RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2968
         (173 letters)



>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase
          {Escherichia coli [TaxId: 562]}
          Length = 77

 Score = 24.3 bits (53), Expect = 3.2
 Identities = 5/19 (26%), Positives = 11/19 (57%)

Query: 77 DPKLYQQLKETCQRQAKQE 95
          D KL+ +L++  +  A + 
Sbjct: 3  DRKLFAKLRKLRKSIADES 21


>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent
           helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score = 24.8 bits (54), Expect = 3.4
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 74  KKVDPKLYQQLKETCQRQAKQEIDGKRYSAVINPK 108
           ++    LY +L E  Q+ A +       + +   K
Sbjct: 9   QETQIVLYGKLVEARQKHANKM--DVPPAILATNK 41


>d1tiga_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal
           domain {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 88

 Score = 24.7 bits (54), Expect = 3.5
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 50  RWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQE----IDGKRYSAVI 105
           ++L    +V     I  +   I +K++  ++  +L E C   A  E    +DG+    V+
Sbjct: 26  KFLEKGDKVK--ATIRFKGRAITHKEIGQRVLDRLSEACADIAVVETAPKMDGRNMFLVL 83

Query: 106 NPK 108
            PK
Sbjct: 84  APK 86


>d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli
           [TaxId: 562]}
          Length = 327

 Score = 25.4 bits (56), Expect = 4.6
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 8/56 (14%)

Query: 75  KVDPK-LYQQLKET-CQRQAKQEIDGKRYSAVINPKLPLIILGMIGILGGALCLFL 128
           +VD   L  QL  T  + + + E       A++  ++P  I G IG     L + L
Sbjct: 252 RVDADTLKHQLALTGDEDRLELEWH----QALLRGEMPQTIGGGIGQ--SRLTMLL 301


>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction
          centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
          Length = 38

 Score = 22.5 bits (48), Expect = 8.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 10 AASLLPWIAYYVANWQYLCVITSL 33
          AAS LPWI   V  W    V+  L
Sbjct: 6  AASFLPWIFIPVVCWLMPTVVMGL 29


>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 347

 Score = 24.6 bits (53), Expect = 8.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 69 EKINNKKVDPKLYQQLKETCQRQAKQEI 96
          E + + KV P LY+QL++ C+   + +I
Sbjct: 37 ENLCSHKVSPMLYKQLRQACEDHVQAQI 64


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.141    0.444 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 679,503
Number of extensions: 30183
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 7
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.4 bits)