BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2970
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/180 (66%), Positives = 134/180 (74%), Gaps = 41/180 (22%)
Query: 9 LDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIK 68
LDWFK+LFWKEEMELTLVGLQ SGKTTFVNVIASGQF++DMIPTVGFNMRKITKGNVTIK
Sbjct: 20 LDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIK 79
Query: 69 VWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSL 128
+WDIGGQPRFRSMWERYCRGV+AIV
Sbjct: 80 LWDIGGQPRFRSMWERYCRGVSAIV----------------------------------- 104
Query: 129 LFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
YMVDAAD +K+EAS+NELH L++KPQL GIP+LVLGNKRDLP ALDEKELI+++
Sbjct: 105 ------YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKM 158
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/171 (66%), Positives = 126/171 (73%), Gaps = 41/171 (23%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPR 77
KEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+TKGNVTIK+WDIGGQPR
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPR 79
Query: 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMV 137
FRSMWERYCRGVNAIV YM+
Sbjct: 80 FRSMWERYCRGVNAIV-----------------------------------------YMI 98
Query: 138 DAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
DAAD +K+EASRNELH L++KPQL GIP+LVLGNKRDLPNALDEK+LI+++
Sbjct: 99 DAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKM 149
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 221 bits (562), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 112/171 (65%), Positives = 125/171 (73%), Gaps = 41/171 (23%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPR 77
KEEMELTLVGLQ SGKTTFVNVIASGQF++DMIPTVGFNMRKITKGNVTIK+WDIGGQPR
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPR 79
Query: 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMV 137
FRSMWERYCRGV+AIV YMV
Sbjct: 80 FRSMWERYCRGVSAIV-----------------------------------------YMV 98
Query: 138 DAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
DAAD +K+EAS+NELH L++KPQL GIP+LVLGNKRDLP ALDEKELI+++
Sbjct: 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKM 149
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 42/177 (23%)
Query: 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWD 71
F LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ + N++ VWD
Sbjct: 12 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWD 70
Query: 72 IGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131
+GGQ + R +W Y + ++
Sbjct: 71 VGGQDKIRPLWRHYFQNTQGLI-------------------------------------- 92
Query: 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
++VD+ D D++ +R+ELH ++ + +L +LV NK+DLPNA++ E+ D++
Sbjct: 93 ---FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 146
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 42/177 (23%)
Query: 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWD 71
FK LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ + N++ VWD
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWD 67
Query: 72 IGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131
+GGQ + R +W Y + ++
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLI-------------------------------------- 89
Query: 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
++VD+ D +++ +R EL ++ + +L +LV NK+DLPNA++ E+ D++
Sbjct: 90 ---FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 42/177 (23%)
Query: 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWD 71
FK LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ + N++ VWD
Sbjct: 8 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWD 66
Query: 72 IGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131
+GGQ + R +W Y + ++
Sbjct: 67 VGGQDKIRPLWRHYFQNTQGLI-------------------------------------- 88
Query: 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
++VD+ D +++ +R EL ++ + +L +LV NK+DLPNA++ E+ D++
Sbjct: 89 ---FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKL 142
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 42/175 (24%)
Query: 14 SLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIG 73
+F +EM + ++GL +GKTT + + GQ S IPTVGFN+ +T NV VWD+G
Sbjct: 7 KIFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVG 65
Query: 74 GQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLI 133
GQ + R +W Y G ++
Sbjct: 66 GQDKIRPLWRHYYTGTQGLI---------------------------------------- 85
Query: 134 KYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
++VD AD D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++
Sbjct: 86 -FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL 139
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 42/175 (24%)
Query: 14 SLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIG 73
+F +EM + ++GL +GKTT + + GQ S IPTVGFN+ +T NV VWD+G
Sbjct: 6 KIFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVG 64
Query: 74 GQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLI 133
GQ + R +W Y G ++
Sbjct: 65 GQDKIRPLWRHYYTGTQGLI---------------------------------------- 84
Query: 134 KYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
++VD AD D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++
Sbjct: 85 -FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL 138
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 42/180 (23%)
Query: 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWD 71
F LF K+++ + +VGL +GKTT + + G+ IPT+GFN+ + N++ VWD
Sbjct: 9 FNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVT-TIPTIGFNVETVEFRNISFTVWD 67
Query: 72 IGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131
+GGQ + R +W Y + ++
Sbjct: 68 VGGQDKIRPLWRHYYSNTDGLI-------------------------------------- 89
Query: 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIMID 191
++VD+ D ++++ +R ELH +I + +L ILV NK+DLPNA+ E+ +++ ++
Sbjct: 90 ---FVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLN 146
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 42/177 (23%)
Query: 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWD 71
+F +EM + ++GL +GKTT + + GQ S IPTVGFN+ +T NV VWD
Sbjct: 5 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWD 63
Query: 72 IGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131
+GG + R +W Y G ++
Sbjct: 64 VGGLDKIRPLWRHYYTGTQGLI-------------------------------------- 85
Query: 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
++VD AD D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++
Sbjct: 86 ---FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL 139
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 42/170 (24%)
Query: 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78
+EM + ++GL +GKTT + + GQ S IPTVGFN+ +T NV VWD+GGQ +
Sbjct: 321 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 379
Query: 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVD 138
R +W Y G ++ ++VD
Sbjct: 380 RPLWRHYYTGTQGLI-----------------------------------------FVVD 398
Query: 139 AADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
AD D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++
Sbjct: 399 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL 448
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 42/168 (25%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80
M + ++GL +GKTT + + GQ S IPTVGFN+ +T NV VWD+GGQ + R
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP 59
Query: 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA 140
+W Y G ++ ++VD A
Sbjct: 60 LWRHYYTGTQGLI-----------------------------------------FVVDCA 78
Query: 141 DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
D D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++
Sbjct: 79 DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL 126
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 42/176 (23%)
Query: 13 KSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDI 72
+ LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ + N++ VWD+
Sbjct: 158 RGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDV 216
Query: 73 GGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQL 132
GGQ + R +W Y + ++
Sbjct: 217 GGQDKIRPLWRHYFQNTQGLI--------------------------------------- 237
Query: 133 IKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
++VD+ D +++ +R EL ++ + +L +LV NK+DLPNA++ E+ D++
Sbjct: 238 --FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKL 291
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 42/168 (25%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80
M + ++GL +GKTT + + GQ S IPTVGFN+ +T NV VWD+GGQ + R
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP 59
Query: 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA 140
+W Y G ++ ++VD A
Sbjct: 60 LWRHYYTGTQGLI-----------------------------------------FVVDCA 78
Query: 141 DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
D D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++
Sbjct: 79 DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL 126
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 42/177 (23%)
Query: 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWD 71
F +F K++M + +VGL +GKTT + + G+ IPT+GFN+ + N+ VWD
Sbjct: 21 FSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNICFTVWD 79
Query: 72 IGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131
+GGQ + R +W Y + ++
Sbjct: 80 VGGQDKIRPLWRHYFQNTQGLI-------------------------------------- 101
Query: 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
++VD+ D ++++ S +EL ++++ +L +LV NK+D+PNA+ EL D++
Sbjct: 102 ---FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKL 155
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 42/169 (24%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
EM + ++GL +GKTT + + GQ S IPTVGFN+ +T NV VWD+GG + R
Sbjct: 2 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIR 60
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
+W Y G ++ ++VD
Sbjct: 61 PLWRHYYTGTQGLI-----------------------------------------FVVDC 79
Query: 140 ADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
AD D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++
Sbjct: 80 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL 128
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 42/169 (24%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
EM + ++GL +GKTT + + GQ S IPTVGFN+ +T NV VWD+GG + R
Sbjct: 3 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIR 61
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
+W Y G ++ ++VD
Sbjct: 62 PLWRHYYTGTQGLI-----------------------------------------FVVDC 80
Query: 140 ADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
AD D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++
Sbjct: 81 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL 129
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 42/178 (23%)
Query: 11 WFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVW 70
W L K+EM + +VGL +GKT+ + + G+ IPT+GFN+ + N++ VW
Sbjct: 8 WLSKLLGKKEMRILMVGLDAAGKTSILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVW 66
Query: 71 DIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLF 130
D+GGQ + R +W Y + AI+
Sbjct: 67 DVGGQDKIRPLWRHYYQNTQAII------------------------------------- 89
Query: 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
++VD+ D D++ +R EL ++ + ++ +LV NK DLP A+ E+ +++
Sbjct: 90 ----FVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQAMSISEVTEKL 143
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 42/177 (23%)
Query: 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWD 71
F LF K++M + +VGL +GKTT + + G+ IPT+GFN+ + N+ VWD
Sbjct: 9 FSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNICFTVWD 67
Query: 72 IGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131
+GGQ R R +W+ Y + ++
Sbjct: 68 VGGQDRIRPLWKHYFQNTQGLI-------------------------------------- 89
Query: 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
++VD+ D ++++ +EL ++ +L +L+ NK+DLPNA+ E+ D++
Sbjct: 90 ---FVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKL 143
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 42/177 (23%)
Query: 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWD 71
F +LF +EM + +VGL +GKTT + + G+ IPT+GFN+ + N++ VWD
Sbjct: 9 FSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVIT-TIPTIGFNVETVQYKNISFTVWD 67
Query: 72 IGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131
+GGQ R RS+W Y R ++
Sbjct: 68 VGGQDRIRSLWRHYYRNTEGVI-------------------------------------- 89
Query: 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
++VD+ D ++ +R + ++ + +L LV NK+DLP A+ E+ +++
Sbjct: 90 ---FVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKL 143
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 42/163 (25%)
Query: 26 VGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERY 85
+GL +GKTT + + GQ S IPTVGFN+ +T NV VWD+GGQ + R +W Y
Sbjct: 6 LGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHY 64
Query: 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL 145
G ++ ++VD AD D++
Sbjct: 65 YTGTQGLI-----------------------------------------FVVDCADRDRI 83
Query: 146 EASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
+ +R ELH +I + IL+ NK+DLP+A E+ +++
Sbjct: 84 DEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQEKL 126
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 42/177 (23%)
Query: 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWD 71
F +LF +EM + +VGL +GKTT + + G+ IPT+GFN+ + N++ VWD
Sbjct: 9 FSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVIT-TIPTIGFNVETVQYKNISFTVWD 67
Query: 72 IGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131
+GGQ R RS+W Y R ++
Sbjct: 68 VGGQDRIRSLWRHYYRNTEGVI-------------------------------------- 89
Query: 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
+++D+ D ++ +R + ++ + +L LV NK+DLP A+ E+ +++
Sbjct: 90 ---FVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKL 143
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 42/168 (25%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80
M + +VGL +GKTT + + G+ IPT+GFN+ + N++ VWD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA 140
+W Y + ++ ++VD+
Sbjct: 60 LWRHYFQNTQGLI-----------------------------------------FVVDSN 78
Query: 141 DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
D +++ +R EL ++ + +L +LV NK+DLPNA++ E+ D++
Sbjct: 79 DRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKL 126
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 42/177 (23%)
Query: 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWD 71
F +LF +EM + +VGL +GKTT + + G+ IPT+GFN+ + N++ VWD
Sbjct: 9 FSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVIT-TIPTIGFNVECVQYCNISFTVWD 67
Query: 72 IGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131
+GGQ R RS+W Y ++
Sbjct: 68 VGGQDRIRSLWRHYYCNTEGVI-------------------------------------- 89
Query: 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
++VD+ D ++ +R + ++ + +L LV NK+DLP A+ E+ +++
Sbjct: 90 ---FVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAMSAAEITEKL 143
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 42/168 (25%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80
M + +VGL +GKTT + + G+ IPT+GFN+ + N++ VWD+GG + R
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGLDKIRP 61
Query: 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA 140
+W Y + ++ ++VD+
Sbjct: 62 LWRHYFQNTQGLI-----------------------------------------FVVDSN 80
Query: 141 DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
D +++ +R EL ++ + +L +LV NK+DLPNA++ E+ D++
Sbjct: 81 DRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKL 128
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 43/185 (23%)
Query: 8 ILDWFKSLFWKE-EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVT 66
+L K + KE E+ L ++GL +GKTT + +G+ + PT+GFN++ +
Sbjct: 5 LLTILKKMKQKERELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFK 63
Query: 67 IKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWL 126
+ +WD+GGQ RS W Y + ++W
Sbjct: 64 LNIWDVGGQKSLRSYWRNYFESTDGLIW-------------------------------- 91
Query: 127 SLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID 186
+VD+AD +++ + EL +L+ + +L G +L+ NK+DLP AL + +
Sbjct: 92 ---------VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQE 142
Query: 187 RIMID 191
+ +D
Sbjct: 143 ALELD 147
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 43/185 (23%)
Query: 8 ILDWFKSLFWKE-EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVT 66
+L K + KE E+ L ++GL +GKTT + +G+ + PT+GFN++ +
Sbjct: 3 LLTILKKMKQKERELRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGFNIKTLEHRGFK 61
Query: 67 IKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWL 126
+ +WD+GGQ RS W Y + ++W
Sbjct: 62 LNIWDVGGQKSLRSYWRNYFESTDGLIW-------------------------------- 89
Query: 127 SLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID 186
+VD+AD +++ + EL +L+ + +L G +L+ NK+DLP AL + +
Sbjct: 90 ---------VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIRE 140
Query: 187 RIMID 191
+ +D
Sbjct: 141 VLELD 145
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 42/168 (25%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80
M + +VGL +GKTT + + G+ IPT+GFN+ + N++ VWD+GGQ R RS
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVIT-TIPTIGFNVETVQYKNISFTVWDVGGQDRIRS 59
Query: 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA 140
+W Y R ++ ++VD+
Sbjct: 60 LWRHYYRNTEGVI-----------------------------------------FVVDSN 78
Query: 141 DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
D ++ +R + ++ + +L LV NK+DLP A+ E+ +++
Sbjct: 79 DRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKL 126
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 43/173 (24%)
Query: 8 ILDWFKSLFWKE-EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVT 66
+L K + KE E+ L ++GL +GKTT + +G+ + PT+GFN++ +
Sbjct: 5 LLTILKKMKQKERELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFK 63
Query: 67 IKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWL 126
+ +WD+GGQ RS W Y + ++W
Sbjct: 64 LNIWDVGGQKSLRSYWRNYFESTDGLIW-------------------------------- 91
Query: 127 SLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL 179
+VD+AD +++ + EL +L+ + +L G +L+ NK+DLP AL
Sbjct: 92 ---------VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 47/182 (25%)
Query: 8 ILDWFKSLF-----WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK 62
I WF+ + W + +L +GL +GKTT ++++ + + + + PT ++
Sbjct: 6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAI 64
Query: 63 GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSG 122
GN+ +D+GG + R +W+ Y VN IV
Sbjct: 65 GNIKFTTFDLGGHIQARRLWKDYFPEVNGIV----------------------------- 95
Query: 123 PMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK 182
++VDAAD ++ + +R EL AL +L +P ++LGNK D PNA+ E
Sbjct: 96 ------------FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEA 143
Query: 183 EL 184
EL
Sbjct: 144 EL 145
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 42/167 (25%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
EM + ++GL +GKTT + + G+ IPT+GFN+ +T N+ +VWD+GGQ R
Sbjct: 2 EMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGQTSIR 60
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
W Y +A++ Y+VD+
Sbjct: 61 PYWRCYYSNTDAVI-----------------------------------------YVVDS 79
Query: 140 ADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID 186
D D++ S++EL A++E+ +L ++V NK+D+ A+ E+ +
Sbjct: 80 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMAN 126
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 51/186 (27%)
Query: 8 ILDWFKSLF---------WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR 58
I DW S F +K+ +L +GL +GKTT ++++ + Q +PT+
Sbjct: 4 IFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSE 62
Query: 59 KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDL 118
++T +T +D+GG + R +W+ Y +N IV
Sbjct: 63 ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIV------------------------- 97
Query: 119 GVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA 178
++VD AD ++L S+ EL +L+ + +PIL+LGNK D P A
Sbjct: 98 ----------------FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA 141
Query: 179 LDEKEL 184
+ E+ L
Sbjct: 142 ISEERL 147
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 47/178 (26%)
Query: 12 FKSLFWK-----EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVT 66
F S+F K +E+ + ++GL +GKTT + + G+ PT+GFN+ ++ N+
Sbjct: 5 FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVETLSYKNLK 63
Query: 67 IKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWL 126
+ VWD+GGQ R W Y A++
Sbjct: 64 LNVWDLGGQTSIRPYWRCYYADTAAVI--------------------------------- 90
Query: 127 SLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL 184
++VD+ D D++ + ELH ++++ +L +LV NK+D P AL E+
Sbjct: 91 --------FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEV 140
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 42/169 (24%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
EM + ++GL +GKTT + + G+ IPT+GFN+ +T N+ +VWD+GG R
Sbjct: 4 EMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 62
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
W Y +A++ Y+VD+
Sbjct: 63 PYWRCYYSNTDAVI-----------------------------------------YVVDS 81
Query: 140 ADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
D D++ S++EL A++E+ +L ++V NK+D+ A+ E+ + +
Sbjct: 82 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSL 130
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 42/169 (24%)
Query: 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQ 75
+K+ +L +GL +GKTT ++++ + Q +PT+ ++T +T +D+GG
Sbjct: 18 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGH 76
Query: 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKY 135
+ R +W+ Y +N IV +
Sbjct: 77 IQARRVWKNYLPAINGIV-----------------------------------------F 95
Query: 136 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL 184
+VD AD ++L S+ EL +L+ + +PIL+LGNK D P A+ E+ L
Sbjct: 96 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERL 144
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 42/159 (26%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80
+ L ++GL +GKTT + +G+ + PT+GFN++ + + +WD+GG RS
Sbjct: 2 LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRS 60
Query: 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA 140
W Y + ++W +VD+A
Sbjct: 61 YWRNYFESTDGLIW-----------------------------------------VVDSA 79
Query: 141 DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL 179
D +++ + EL +L+ + +L G +L+ NK+DLP AL
Sbjct: 80 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 118
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 42/169 (24%)
Query: 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQ 75
+K+ +L +GL +GKTT ++++ + Q +PT+ ++T +T +D+GG
Sbjct: 12 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGG 70
Query: 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKY 135
+ R +W+ Y +N IV +
Sbjct: 71 IQARRVWKNYLPAINGIV-----------------------------------------F 89
Query: 136 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL 184
+VD AD ++L S+ EL +L+ + +PIL+LGNK D P A+ E+ L
Sbjct: 90 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERL 138
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 42/163 (25%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81
+L +GL +GKTT ++++ + + + + PT ++ GN+ +D+GG + R +
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRL 61
Query: 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD 141
W+ Y VN IV ++VDAAD
Sbjct: 62 WKDYFPEVNGIV-----------------------------------------FLVDAAD 80
Query: 142 TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL 184
++ + +R EL AL +L +P ++LGNK D PNA+ E EL
Sbjct: 81 PERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAEL 123
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 44/164 (26%)
Query: 19 EEMELTLVGLQCSGKTTFVNVIA-SGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPR 77
+E+ + +GL SGKTT +N + S SQ+++PT+GF++ K +++ V+D+ GQ R
Sbjct: 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79
Query: 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMV 137
+R++WE Y + AI+ +++
Sbjct: 80 YRNLWEHYYKEGQAII-----------------------------------------FVI 98
Query: 138 DAADTDKLEASRNELHALIEKPQLI--GIPILVLGNKRDLPNAL 179
D++D ++ ++ EL L+ P + IPIL NK DL +A+
Sbjct: 99 DSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV 142
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 42/169 (24%)
Query: 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQ 75
+K+ +L +GL +GKTT ++++ + Q +PT+ ++T +T +D+GG
Sbjct: 31 LYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGH 89
Query: 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKY 135
+ R +W+ Y +N IV +
Sbjct: 90 EQARRVWKNYLPAINGIV-----------------------------------------F 108
Query: 136 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL 184
+VD AD +L S+ EL+AL+ + +PIL+LGNK D +A+ E++L
Sbjct: 109 LVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKL 157
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 42/161 (26%)
Query: 31 SGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVN 90
+GKTT + +G+ + PT+GFN++ + + +WD+GGQ RS W Y +
Sbjct: 29 AGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTD 87
Query: 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN 150
++W +VD+AD + + +
Sbjct: 88 GLIW-----------------------------------------VVDSADRQRXQDCQR 106
Query: 151 ELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIMID 191
EL +L+ + +L G +L+ NK+DLP AL + + + +D
Sbjct: 107 ELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALELD 147
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 49/177 (27%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMI-PTVGFNMRKITKGNVTIKVWDIGGQP 76
K ++++ + GL SGKTT +N + Q S I TVG+N+ KG V V+D+GG
Sbjct: 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAK 74
Query: 77 RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYM 136
+FR +WE Y ++A++ ++
Sbjct: 75 KFRGLWETYYDNIDAVI-----------------------------------------FV 93
Query: 137 VDAADTDKLEASRNELHALI-------EKPQLIGIPILVLGNKRDLPNALDEKELID 186
VD++D +L ++E+ A++ E P +P L NK D A EL++
Sbjct: 94 VDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVE 150
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 42/168 (25%)
Query: 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78
+E+ + L+GL +GKTT + +AS S + PT GFN++ + + VWDIGGQ +
Sbjct: 16 QEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 74
Query: 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVD 138
R W RS Y+E D+ + Y++D
Sbjct: 75 RPYW------------------------RS---YFENTDILI--------------YVID 93
Query: 139 AADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID 186
+AD + E + EL L+E+ +L +P+L+ NK+DL A E+ +
Sbjct: 94 SADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAE 141
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 42/168 (25%)
Query: 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78
+E+ + L+GL +GKTT + +AS S + PT GFN++ + + VWDIGGQ +
Sbjct: 15 QEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 73
Query: 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVD 138
R W Y+E D+ + Y++D
Sbjct: 74 RPYWRS---------------------------YFENTDILI--------------YVID 92
Query: 139 AADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID 186
+AD + E + EL L+E+ +L +P+L+ NK+DL A E+ +
Sbjct: 93 SADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAE 140
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 42/167 (25%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
E+ + L+GL +GKTT + +AS S + PT GFN++ + + VWDIGGQ + R
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 62
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
W Y+E D ++ Y++D+
Sbjct: 63 PYWRS---------------------------YFENTD--------------ILIYVIDS 81
Query: 140 ADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID 186
AD + E + EL L+E+ +L +P+L+ NK+DL A E+ +
Sbjct: 82 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAE 128
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 54/188 (28%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMI----PTVGFN 56
M +L RI W LF +E ++ +VGL +GKTT + QFS + + PT+G N
Sbjct: 1 MGILFTRI--W--RLFNHQEHKVIIVGLDNAGKTTILY-----QFSMNEVVHTSPTIGSN 51
Query: 57 MRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPV 116
+ +I N +WDIGGQ RS W Y +T +++
Sbjct: 52 VEEIVINNTRFLMWDIGGQESLRSSWNTY--------YTNTEFVI--------------- 88
Query: 117 DLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176
+VD+ D +++ +R EL+ ++ L +L+ NK+D+
Sbjct: 89 ------------------VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130
Query: 177 NALDEKEL 184
+ E+
Sbjct: 131 ECMTVAEI 138
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 54/188 (28%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMI----PTVGFN 56
M +L RI W LF +E ++ +VGL +GKTT + QFS + + PT+G N
Sbjct: 1 MGILFTRI--W--RLFNHQEHKVIIVGLDNAGKTTILY-----QFSMNEVVHTSPTIGSN 51
Query: 57 MRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPV 116
+ +I N +WDIGGQ RS W Y +T +++
Sbjct: 52 VEEIVINNTRFLMWDIGGQESLRSSWNTY--------YTNTEFVI--------------- 88
Query: 117 DLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176
+VD+ D +++ +R EL+ ++ L +L+ NK+D+
Sbjct: 89 ------------------VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130
Query: 177 NALDEKEL 184
+ E+
Sbjct: 131 ECMTVAEI 138
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 77/171 (45%), Gaps = 42/171 (24%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
++ + ++GL +GKT+ + + G + N+ + N++ +VWD+GGQ R
Sbjct: 22 KIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG-VNLETLQYKNISFEVWDLGGQTGVR 80
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
W Y +A++ Y+VD+
Sbjct: 81 PYWRCYFSDTDAVI-----------------------------------------YVVDS 99
Query: 140 ADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIMI 190
D D++ +++EL+AL+++ +L +L+ NK+DLP+A E E+ +++ +
Sbjct: 100 TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGV 150
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 50/175 (28%)
Query: 14 SLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMI----PTVGFNMRKITKGNVTIKV 69
SLF +E ++ +VGL +GKTT + QF + + PT+G N+ +I N +
Sbjct: 10 SLFCNQEHKVIIVGLDNAGKTTILY-----QFLMNEVVHTSPTIGSNVEEIVVKNTHFLM 64
Query: 70 WDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLL 129
WDIGGQ RS W Y I+
Sbjct: 65 WDIGGQESLRSSWNTYYSNTEFII------------------------------------ 88
Query: 130 FQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL 184
+VD+ D ++L ++ EL+ ++ L +L+ NK+D+ + E+
Sbjct: 89 -----LVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEI 138
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 42/167 (25%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
E+ + L+GL +GKTT + +AS S + PT GFN++ + + VWDIGG + R
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGLRKIR 62
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
W Y+E D ++ Y++D+
Sbjct: 63 PYWRS---------------------------YFENTD--------------ILIYVIDS 81
Query: 140 ADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID 186
AD + E + EL L+E+ +L +P+L+ NK+DL A E+ +
Sbjct: 82 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAE 128
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 50/170 (29%)
Query: 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMI----PTVGFNMRKITKGNVTIKVWDIGG 74
+E ++ +VGL +GKTT + QFS + + PT+G N+ +I N +WDIGG
Sbjct: 21 QEHKVIIVGLDNAGKTTILY-----QFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGG 75
Query: 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIK 134
Q RS W Y +T +++
Sbjct: 76 QESLRSSWNTY--------YTNTEFVI--------------------------------- 94
Query: 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL 184
+VD+ D +++ +R EL+ ++ L +L+ NK+D+ + E+
Sbjct: 95 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEI 144
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 50/170 (29%)
Query: 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMI----PTVGFNMRKITKGNVTIKVWDIGG 74
+E ++ +VGL +GKTT + QFS + + PT+G N+ +I N +WDIGG
Sbjct: 20 QEHKVIIVGLDNAGKTTILY-----QFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGG 74
Query: 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIK 134
Q RS W Y +T +++
Sbjct: 75 QESLRSSWNTY--------YTNTEFVI--------------------------------- 93
Query: 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL 184
+VD+ D +++ +R EL+ ++ L +L+ NK+D+ + E+
Sbjct: 94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEI 143
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
E + ++GL +GKTT + + G+ IPT+GFN+ +T N+ +VWD+GG R
Sbjct: 7 EXRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 65
Query: 80 SMWERYCRGVNAIVW 94
W Y +A+++
Sbjct: 66 PYWRCYYSNTDAVIY 80
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMR--KITKGNVTIKVWDIGGQPR 77
+L LVG GKT V +G FS+ T+G F M+ +I V +++WD GQ R
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 78 FRSMWERYCRGVNAIV 93
FR++ + Y R N +
Sbjct: 91 FRTITQSYYRSANGAI 106
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQ 75
+ +L LVG +GKTTFV +G+F + +PT+G + + +G + VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 76 PRFRSMWERY 85
+F + + Y
Sbjct: 70 EKFGGLRDGY 79
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQ 75
+ +L LVG +GKTTFV +G+F + +PT+G + + +G + VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 76 PRFRSMWERY 85
+F + + Y
Sbjct: 70 EKFGGLRDGY 79
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPR 77
+L L+G GK+ + A ++ I T+G F +R I+ N T+K +WD GQ R
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 78 FRSMWERYCRGVNAIV 93
FR++ Y RG + I+
Sbjct: 71 FRTITSSYYRGAHGII 86
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPR 77
++ L+G GKT V G F T+G + +I V +++WD GQ R
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 78 FRSMWERYCRGVNAIVWT 95
FRS+ + Y R NA++ T
Sbjct: 88 FRSITQSYYRSANALILT 105
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKIT---KGNVTIKVWDIGG 74
++++ ++G SGKT+ A F + T+G F +R+IT NVT+++WDIGG
Sbjct: 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65
Query: 75 QPRFRSMWERYCRGVNAIV 93
Q M ++Y G ++
Sbjct: 66 QTIGGKMLDKYIYGAQGVL 84
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
Length = 181
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPR 77
+L L+G GK+ + A +++ I T+G F +R I TIK +WD GQ R
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 78 FRSMWERYCRGVNAIV 93
FR++ Y RG + I+
Sbjct: 71 FRTITSSYYRGAHGII 86
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQP 76
+L L+G GK+ + A +++ I T+G F +R I TIK +WD GQ
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 77 RFRSMWERYCRGVNAIV 93
RFR++ Y RG + I+
Sbjct: 67 RFRTITSSYYRGAHGII 83
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
Length = 175
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPR 77
+L L+G GK+ + A +++ I T+G F +R I TIK +WD GQ R
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 78 FRSMWERYCRGVNAIV 93
FR++ Y RG + I+
Sbjct: 71 FRTITSSYYRGAHGII 86
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPR 77
+L L+G GK+ + A +++ I T+G F +R I TIK +WD GQ R
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 78 FRSMWERYCRGVNAIV 93
FR++ Y RG + I+
Sbjct: 68 FRTITSSYYRGAHGII 83
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPR 77
+L L+G GK+ + A +++ I T+G F +R I TIK +WD GQ R
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 78 FRSMWERYCRGVNAIV 93
FR++ Y RG + I+
Sbjct: 70 FRTITSSYYRGAHGII 85
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPR 77
+L L+G GK+ + A +++ I T+G F +R I TIK +WD GQ R
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 78 FRSMWERYCRGVNAIV 93
FR++ Y RG + I+
Sbjct: 61 FRTITSSYYRGAHGII 76
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQP 76
+L L+G GK+ + A +++ I T+G F +R I TIK +WD GQ
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 77 RFRSMWERYCRGVNAIV 93
RFR++ Y RG + I+
Sbjct: 94 RFRTITSSYYRGAHGII 110
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPR 77
+L L+G GK+ + A +++ I T+G F +R I TIK +WD GQ R
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 78 FRSMWERYCRGVNAIV 93
FR++ Y RG + I+
Sbjct: 87 FRTITSSYYRGAHGII 102
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L L+G GK+ + A +++ I T+G F +R I TIK +WD GQ RF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG + I+
Sbjct: 61 RTITSSYYRGAHGII 75
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPR 77
+L L+G GK + A +++ I T+G F +R I TIK +WD GQ R
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 78 FRSMWERYCRGVNAIV 93
FR++ Y RG + I+
Sbjct: 78 FRTITSSYYRGAHGII 93
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRS 80
++G +GK+ ++ +F QD T+G F R + G T+K +WD GQ RFRS
Sbjct: 30 VIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS 89
Query: 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA 140
+ Y RG + +Y ++ +++ + ++ P + +L K +
Sbjct: 90 VTRSYYRGAAGALL---VYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 146
Query: 141 DTDKLEASR----NELHALIEKPQLIG--IPILVLGNKRDLPNALDEKEL 184
+ LEASR NEL +E L G + L R + N +D EL
Sbjct: 147 EVTFLEASRFAQENELM-FLETSALTGENVEEAFLKCARTILNKIDSGEL 195
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQ 75
+ +L LVG +GKTTFV +G+F + + T+G + + +G + VWD GQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 76 PRFRSMWERY 85
+F + + Y
Sbjct: 75 EKFGGLRDGY 84
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQ 75
+ +L LVG +GKTTFV +G+F + + T+G + + +G + VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 76 PRFRSMWERY 85
+F + + Y
Sbjct: 70 EKFGGLRDGY 79
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQ 75
+ +L LVG +GKTTFV +G+F + + T+G + + +G + VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 76 PRFRSMWERY 85
+F + + Y
Sbjct: 70 EKFGGLEDGY 79
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQ 75
+ +L LVG +GKTTFV +G+F + + T+G + + +G + VWD GQ
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 76 PRFRSMWERY 85
+F + + Y
Sbjct: 63 EKFGGLRDGY 72
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPR 77
++ ++G GKT +G+F T+G + R+ I + I++WD GQ R
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81
Query: 78 FR-SMWERYCRGVNAIVW 94
FR SM + Y R V+A+V+
Sbjct: 82 FRKSMVQHYYRNVHAVVF 99
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQP 76
++ ++G GKT +G+F T+G + R+ I + I++WD GQ
Sbjct: 30 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 77 RFR-SMWERYCRGVNAIVW 94
RFR SM + Y R V+A+V+
Sbjct: 90 RFRKSMVQHYYRNVHAVVF 108
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
Length = 216
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQ 75
+ +L LVG +GKTTFV +G+F + + T+G + + +G + VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 76 PRFRSMWERY 85
+F + + Y
Sbjct: 70 EKFGGLRDGY 79
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPR 77
+L L+G GK+ + A +++ I T+G F +R I TIK +WD GQ R
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 78 FRSMWERYCRGVNAIV 93
FR++ Y RG + I+
Sbjct: 78 FRTITSSYYRGAHGII 93
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQ 75
+ +L LVG +GKTTFV +G+F + + T+G + + +G + VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 76 PRFRSMWERY 85
+F + + Y
Sbjct: 70 EKFGGLRDGY 79
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 13 KSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRK-ITKGNVTI-K 68
KS ++ ++ L G GK++F+ + +F +++ T+G F M+ I G T+ +
Sbjct: 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQ 80
Query: 69 VWDIGGQPRFRSMWERYCRGVNAIV 93
+WD GQ RFRS+ + Y R + ++
Sbjct: 81 LWDTAGQERFRSIAKSYFRKADGVL 105
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPR 77
+L ++G GK++ + A FS I T+G + + +I V +++WD GQ R
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 78 FRSMWERYCRGVNAIV 93
FR++ Y RG + ++
Sbjct: 71 FRTITSTYYRGTHGVI 86
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With
Its Cargo (Kap60p) And Rangtp
Length = 176
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQ 75
+ +L LVG +GKTTFV +G+F + + T+G + + +G + VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 76 PRFRSMWERY 85
+F + + Y
Sbjct: 70 EKFGGLRDGY 79
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQP 76
++L L+G GK++ V S F+++ PT+G F +++T T+K +WD GQ
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 77 RFRSMWERYCRGVNA 91
RF S+ Y R A
Sbjct: 64 RFASLAPXYYRNAQA 78
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 48/159 (30%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPR 77
++ L+G GK+ ++ +F+ + T+G F R I TIK +WD GQ R
Sbjct: 22 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 78 FRSMWERYCRG-VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYM 136
+R++ Y RG V A++ +Y ++KH L YE V+ WL K +
Sbjct: 82 YRAITSAYYRGAVGALL----VYDIAKH------LTYENVE------RWL-------KEL 118
Query: 137 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175
D AD++ I I+++GNK DL
Sbjct: 119 RDHADSN--------------------IVIMLVGNKSDL 137
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPR 77
+L L+G GK+ + + ++ D I T+G + + ++ V +++WD GQ R
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 82
Query: 78 FRSMWERYCRGVNAIV 93
FR++ Y RG + I+
Sbjct: 83 FRTITSSYYRGSHGII 98
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQ 75
+ +L LVG +GKTTFV +G+F + + T+G + + +G + VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 76 PRFRSMWERY 85
++ + + Y
Sbjct: 70 EKYGGLRDGY 79
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 48/159 (30%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPR 77
++ L+G GK+ ++ +F+ + T+G F R I TIK +WD GQ R
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 78 FRSMWERYCRG-VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYM 136
+R++ Y RG V A++ +Y ++KH L YE V+ WL K +
Sbjct: 91 YRAITSAYYRGAVGALL----VYDIAKH------LTYENVE------RWL-------KEL 127
Query: 137 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175
D AD++ I I+++GNK DL
Sbjct: 128 RDHADSN--------------------IVIMLVGNKSDL 146
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPR 77
++ L+G GKT ++ +FS D T+G F+ R + G +K +WD G R
Sbjct: 12 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 78 FRSMWERYCRGV 89
+R++ Y RG
Sbjct: 72 YRAITSAYYRGA 83
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQP 76
+L ++G GKT+F+ A F+ + TVG + + T + V +++WD GQ
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 77 RFRSMWERYCRGVNAIV 93
R+R++ Y RG +
Sbjct: 84 RYRTITTAYYRGAMGFI 100
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQP 76
+L L+G GKT+F+ A F+ + TVG + + T + +++WD GQ
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 77 RFRSMWERYCRGV 89
R+R++ Y RG
Sbjct: 83 RYRTITTAYYRGA 95
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQP 76
M++ L+G GK+ + +F+ I T+G + + I V +++WD GQ
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 77 RFRSMWERYCRGVNAIV 93
RFR++ Y RG I+
Sbjct: 64 RFRTITTAYYRGAMGII 80
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPR 77
+L L+G GK+ + + ++ D I T+G + + ++ V +++WD GQ R
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 78 FRSMWERYCRGVNAIV 93
FR++ Y RG + I+
Sbjct: 70 FRTITSSYYRGSHGII 85
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex
With Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPR 77
+L L+G GK+ + + ++ D I T+G + + ++ V +++WD GQ R
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 78 FRSMWERYCRGVNAIV 93
FR++ Y RG + I+
Sbjct: 70 FRTITSSYYRGSHGII 85
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQP 76
++ ++G GKT+F+ A F+ + TVG F ++ I + + IK +WD GQ
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 77 RFRSMWERYCRGV 89
R+R++ Y RG
Sbjct: 66 RYRTITTAYYRGA 78
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 48/159 (30%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPR 77
++ L+G GK+ ++ +F+ + T+G F R I TIK +WD GQ R
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 78 FRSMWERYCRG-VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYM 136
+R + Y RG V A++ +Y ++KH L YE V+ WL K +
Sbjct: 67 YRRITSAYYRGAVGALL----VYDIAKH------LTYENVE------RWL-------KEL 103
Query: 137 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175
D AD++ I I+++GNK DL
Sbjct: 104 RDHADSN--------------------IVIMLVGNKSDL 122
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPR 77
++ L+G GKT ++ +FS D T+G F+ R + G +K +WD G R
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 78 FRSMWERYCRGV 89
+R++ Y RG
Sbjct: 87 YRAITSAYYRGA 98
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQ 75
E+++ L+G GK++ V F ++ PT+G F + + GN K +WD GQ
Sbjct: 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ 82
Query: 76 PRFRSMWERYCRGVNAIV 93
RF S+ Y RG A V
Sbjct: 83 ERFHSLAPMYYRGSAAAV 100
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6
Complexed With Gdp
Length = 162
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQPR 77
+L +G Q GKT+ + F + T+G + T +G V +++WD GQ R
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 78 FRSMWERYCRGVNAIV 93
FRS+ Y R A +
Sbjct: 63 FRSLIPSYIRDSAAAI 78
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQ 75
+ +L L+G GK++ V GQF + T+G F + + + T+K +WD GQ
Sbjct: 8 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQ 67
Query: 76 PRFRSMWERYCRGVNAIV 93
R+ S+ Y RG A +
Sbjct: 68 ERYHSLAPMYYRGAQAAI 85
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQF-SQDMIPTVGFNMRK----ITKGNVTIKVW 70
F+ ++ LVG GKT + G F + I TVG + R + V +++W
Sbjct: 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 65
Query: 71 DIGGQPRFRSMWERYCRGVNAIV 93
D GQ RFRS+ Y R +A++
Sbjct: 66 DTAGQERFRSVTHAYYRDAHALL 88
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQ 75
+ +L L+G GK++ V GQF + T+G F + + + T+K +WD GQ
Sbjct: 3 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 62
Query: 76 PRFRSMWERYCRGVNAIV 93
R+ S+ Y RG A +
Sbjct: 63 ERYHSLAPMYYRGAQAAI 80
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQP 76
M++ L+G GK+ + +F+ I T+G + + I V +++WD GQ
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 77 RFRSMWERYCRGVNAIV 93
RFR++ Y RG I+
Sbjct: 68 RFRTITTAYYRGAMGII 84
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQ 75
+ +L L+G GK++ V GQF + T+G F + + + T+K +WD GQ
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 76 PRFRSMWERYCRGVNAIV 93
R+ S+ Y RG A +
Sbjct: 67 ERYHSLAPXYYRGAQAAI 84
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQ 75
+ +L L+G GK++ V GQF + T+G F + + + T+K +WD GQ
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 76 PRFRSMWERYCRGVNAIV 93
R+ S+ Y RG A +
Sbjct: 66 ERYHSLAPMYYRGAQAAI 83
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQ 75
+ +L L+G GK++ V GQF + T+G F + + + T+K +WD GQ
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 76 PRFRSMWERYCRGVNAIV 93
R+ S+ Y RG A +
Sbjct: 67 ERYHSLAPMYYRGAQAAI 84
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQ 75
+ +L LVG +GKTTFV +G+F + + T+G + + +G + VWD G
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 76 PRFRSMWERY 85
+F + + Y
Sbjct: 70 EKFGGLRDGY 79
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQ 75
+ +L LVG +GKTTFV +G+ + + T+G + + +G + VWD GQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 76 PRFRSMWERY 85
+F + + Y
Sbjct: 75 EKFGGLRDGY 84
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPR 77
++ L+G GK+ + +F+ I T+G + + I V +++WD GQ R
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 78 FRSMWERYCRGVNAIV 93
FR++ Y RG I+
Sbjct: 65 FRTITTAYYRGAXGII 80
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQP 76
M++ L+G GK+ + +F+ I T+G + + I V +++WD GQ
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 77 RFRSMWERYCRGVNAIV 93
RFR++ Y RG I+
Sbjct: 81 RFRTITTAYYRGAMGII 97
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
Length = 176
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQ 75
+ +L LVG +GKTTFV +G+F + + T+G + + +G + VWD G
Sbjct: 6 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 76 PRFRSMWERY 85
+F + + Y
Sbjct: 66 EKFGGLRDGY 75
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQ 75
+ +L LVG +GKTTFV +G+F + + T+G + + +G + VWD G
Sbjct: 12 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 71
Query: 76 PRFRSMWERY 85
+F + + Y
Sbjct: 72 EKFGGLRDGY 81
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex
With Gppnhp
Length = 170
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQ 75
+ +L L+G GK++ V GQF + T+G F + + + T+K +WD GQ
Sbjct: 6 QFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 76 PRFRSMWERYCRGVNAIV 93
R+ S+ Y RG A +
Sbjct: 66 ERYHSLAPMYYRGAQAAI 83
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGN--VTIKVWDIGGQPR 77
++ L+G C GKT+ V +F+ I T+G F +K+ G V + +WD GQ R
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 78 FRSMWERYCRGVNAIV 93
F ++ Y R N +
Sbjct: 68 FHALGPIYYRDSNGAI 83
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 48/160 (30%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQP 76
++ L+G GK+ ++ +F+ + T+G F R I TIK +WD G
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 77 RFRSMWERYCRG-VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKY 135
R+R++ Y RG V A++ +Y ++KH L YE V+ WL K
Sbjct: 69 RYRAITSAYYRGAVGALL----VYDIAKH------LTYENVE------RWL-------KE 105
Query: 136 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175
+ D AD++ I I+++GNK DL
Sbjct: 106 LRDHADSN--------------------IVIMLVGNKSDL 125
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPR 77
+L L+G GKT + + F+ I T+G + + ++ + +++WD GQ R
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 78 FRSMWERYCRGVNAIV 93
FR++ Y RG I+
Sbjct: 68 FRTITTAYYRGAMGIM 83
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPR 77
+L L+G GKT + + F+ I T+G + + ++ + +++WD GQ R
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 78 FRSMWERYCRGVNAIV 93
FR++ Y RG I+
Sbjct: 70 FRTITTAYYRGAMGIM 85
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQP 76
+L LVG +GKTTFV +G+F + I T+G + ++ G + VWD G
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 77 RFRSMWERY 85
+F + + Y
Sbjct: 73 KFGGLRDGY 81
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS 80
L+G GK+ + +F+ I T+G + + I V +++WD GQ RFR+
Sbjct: 8 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT 67
Query: 81 MWERYCRGVNAIV 93
+ Y RG I+
Sbjct: 68 ITTAYYRGAXGII 80
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQP 76
+L LVG +GKTTFV +G+F + I T+G + ++ G + VWD G
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 77 RFRSMWERY 85
+F + + Y
Sbjct: 65 KFGGLRDGY 73
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQP 76
+L LVG +GKTTFV +G+F + I T+G + ++ G + VWD G
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 77 RFRSMWERY 85
+F + + Y
Sbjct: 66 KFGGLRDGY 74
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gtp
Length = 170
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQ 75
+ +L L+G GK++ V GQF + T+G F + + + T+K +WD GQ
Sbjct: 6 QFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 76 PRFRSMWERYCRGVNAIV 93
R+ S+ Y RG A +
Sbjct: 66 ERYHSLAPMYYRGAQAAI 83
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex
With Gppnhp
Length = 170
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQ 75
+ +L L+G GK++ V GQF + T+G F + + + T+K +WD GQ
Sbjct: 6 QFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 76 PRFRSMWERYCRGVNAIV 93
R+ S+ Y RG A +
Sbjct: 66 ERYHSLAPMYYRGAQAAI 83
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex
With Gppnhp
Length = 170
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQ 75
+ +L L+G GK++ V GQF + T+G F + + + T+K +WD GQ
Sbjct: 6 QFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 76 PRFRSMWERYCRGVNAIV 93
R+ S+ Y RG A +
Sbjct: 66 ERYHSLAPMYYRGAQAAI 83
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex
With Gppnhp
Length = 170
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQ 75
+ +L L+G GK++ V GQF + T+G F + + + T+K +WD GQ
Sbjct: 6 QFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 76 PRFRSMWERYCRGVNAIV 93
R+ S+ Y RG A +
Sbjct: 66 ERYHSLAPMYYRGAQAAI 83
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKITKGNVTIK--VWDIGGQ 75
+ +L L+G GK++ V GQF Q+ F + + + T+K +WD GQ
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQ 64
Query: 76 PRFRSMWERYCRGVNAIV 93
R+ S+ Y RG A +
Sbjct: 65 ERYHSLAPMYYRGAQAAI 82
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 48/160 (30%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQP 76
++ L+G GK+ ++ +F+ + T+G F R I TIK +WD G
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 77 RFRSMWERYCRG-VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKY 135
R+R++ Y RG V A++ +Y ++KH L YE V+ WL K
Sbjct: 66 RYRAITSAYYRGAVGALL----VYDIAKH------LTYENVE------RWL-------KE 102
Query: 136 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175
+ D AD++ I I ++GNK DL
Sbjct: 103 LRDHADSN--------------------IVIXLVGNKSDL 122
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 48/159 (30%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPR 77
++ L+G GK+ ++ +F+ + T+G F R I TIK +WD G R
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 78 FRSMWERYCRG-VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYM 136
+R++ Y RG V A++ +Y ++KH L YE V+ WL K +
Sbjct: 91 YRAITSAYYRGAVGALL----VYDIAKH------LTYENVE------RWL-------KEL 127
Query: 137 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175
D AD++ I I+++GNK DL
Sbjct: 128 RDHADSN--------------------IVIMLVGNKSDL 146
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQP 76
++ ++G GKT+F+ A F+ + TVG F ++ I + + IK +WD G
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 77 RFRSMWERYCRGVNAIV 93
R+R++ Y RG +
Sbjct: 69 RYRTITTAYYRGAXGFI 85
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMR--KITKGNVTIKVWDIGGQPR 77
++ L+G GK+ ++ +F+ D T+G F R +I + ++WD GQ R
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 78 FRSMWERYCRG-VNAIVWTGGLYIVSK 103
+R++ Y RG V A++ +Y +SK
Sbjct: 75 YRAITSAYYRGAVGALI----VYDISK 97
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQP 76
+++ +VG GK++ + G F++D T+G + ++ +V + +WD GQ
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 77 RFRSMWERYCRGVNAIV 93
F ++ + Y RG A V
Sbjct: 66 EFDAITKAYYRGAQACV 82
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGN--VTIKVWDIGGQP 76
+++ ++G GKT+ +N + +FS T+G F +++ + VT+++WD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 77 RFRSMWERYCRGVNAIV 93
RF+S+ + RG + V
Sbjct: 69 RFQSLGVAFYRGADCCV 85
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGN--VTIKVWDIGGQP 76
+++ ++G GKT+ +N + +FS T+G F +++ + VT+++WD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 77 RFRSMWERYCRGVNAIV 93
RF+S+ + RG + V
Sbjct: 69 RFQSLGVAFYRGADCCV 85
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGN--VTIKVWDIGGQPRFRS 80
++G +GK+ ++ +F D T+G F + I G V +++WD GQ RFRS
Sbjct: 15 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 74
Query: 81 MWERYCRGV 89
+ Y RG
Sbjct: 75 VTRSYYRGA 83
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG---FNMRKITKGN-VTIKVWDIGGQP 76
++ L+G GK++ +N + +F + T+G N G+ VT+++WD GQ
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 77 RFRSMWERYCRGVNAIVWT 95
RFRS+ + RG + + T
Sbjct: 72 RFRSLRTPFYRGSDCCLLT 90
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 48/160 (30%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQP 76
++ L+G GK+ ++ +F+ + T+G F R I TIK +WD G
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 77 RFRSMWERYCRG-VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKY 135
R+R++ Y RG V A++ +Y ++KH L YE V+ WL K
Sbjct: 72 RYRAITSAYYRGAVGALL----VYDIAKH------LTYENVE------RWL-------KE 108
Query: 136 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175
+ D AD++ I I ++GNK DL
Sbjct: 109 LRDHADSN--------------------IVIXLVGNKSDL 128
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 10 DWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKIT-KGNVT 66
D++ LF ++ L+G GK+ ++ +F+ + T+G F + I K N
Sbjct: 2 DYYDYLF-----KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKI 56
Query: 67 IK--VWDIGGQPRFRSMWERYCRGV 89
IK +WD GQ R+R++ Y RG
Sbjct: 57 IKAQIWDTAGQERYRAITSAYYRGA 81
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGN--VTIKVWDIGGQP 76
+++ ++G GKT+ +N + +FS T+G F +++ + VT+++WD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 77 RFRSMWERYCRGVNAIV 93
RF+S+ + RG + V
Sbjct: 69 RFQSLGVAFYRGADCCV 85
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGN--VTIKVWDIGGQPRFRS 80
++G +GK+ ++ +F D T+G F + I G V +++WD GQ RFRS
Sbjct: 16 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 75
Query: 81 MWERYCRGV 89
+ Y RG
Sbjct: 76 VTRSYYRGA 84
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
Length = 177
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG---FNMRKITKGN-VTIKVWDIGGQP 76
++ L+G GK++ +N + +F + T+G N G+ VT+++WD GQ
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 77 RFRSMWERYCRGVNAIVWT 95
RFRS+ + RG + + T
Sbjct: 68 RFRSLRTPFYRGSDCCLLT 86
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKIT-KGN--VTIKVWDIGGQ 75
+++ ++G GKT+ ++ + ++SQ T+G F +++T G+ T++VWD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 76 PRFRSMWERYCRGVNAIV 93
RF+S+ + RG + V
Sbjct: 69 ERFQSLGVAFYRGADCCV 86
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKIT-KGN-VTIKVWDIGGQP 76
+++ ++G GK++ + F ++ T+G F ++ I+ GN + +WD GQ
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 77 RFRSMWERYCRGVNAIV 93
RFR++ Y RG ++
Sbjct: 76 RFRTLTPSYYRGAQGVI 92
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
Length = 177
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG---FNMRKITKGN-VTIKVWDIGGQP 76
++ L+G GK++ +N + +F + T+G N G+ VT+++WD GQ
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 77 RFRSMWERYCRGVNAIVWT 95
RFRS+ + RG + + T
Sbjct: 70 RFRSLRTPFYRGSDCCLLT 88
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQ 75
E+++ L+G GK++ V F ++ PT+G F + + N K +WD GQ
Sbjct: 5 ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQ 64
Query: 76 PRFRSMWERYCRGVNAIV 93
RFR++ Y RG A +
Sbjct: 65 ERFRALAPMYYRGSAAAI 82
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQ 75
+ +L L+G GK++ V GQF + T+G F + + + T+K +WD G
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 76 PRFRSMWERYCRGVNAIV 93
R+ S+ Y RG A +
Sbjct: 65 ERYHSLAPMYYRGAQAAI 82
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
Length = 168
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQ 75
+ +L L+G GK++ V GQF + T+G F + + + T+K +WD G
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 76 PRFRSMWERYCRGVNAIV 93
R+ S+ Y RG A +
Sbjct: 65 ERYHSLAPMYYRGAQAAI 82
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG---FNMRKITKGN-VTIKVWDIGGQP 76
+++ L+G GK++ +N + +F T+G N G VT+++WD GQ
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 77 RFRSMWERYCRGVNAIVWT 95
RF+S+ + RG + + T
Sbjct: 68 RFKSLRTPFYRGADCCLLT 86
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 19 EEMELT----LVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNV-TIKV 69
E ELT L+G GKTT++N + G+F ++ TVG +T +GNV V
Sbjct: 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNV 65
Query: 70 WDIGGQPRFRSMWERYCRGVNAIV 93
WD GQ + + + Y G + +
Sbjct: 66 WDTAGQEKKAVLKDVYYIGASGAI 89
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTV--GFNMRKITKGN--VTIKVWDIGGQPR 77
++ L+G C GKT+ V +F+ I T+ F +K+ G V + +WD GQ R
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 78 FRSMWERYCRGVNAIV 93
F ++ Y R N +
Sbjct: 68 FHALGPIYYRDSNGAI 83
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTV--GFNMRKITKGN--VTIKVWDIGGQPR 77
++ L+G C GKT+ V +F+ I T+ F +K+ G V + +WD GQ R
Sbjct: 22 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 78 FRSMWERYCRGVNAIV 93
F ++ Y R N +
Sbjct: 82 FHALGPIYYRDSNGAI 97
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQ 75
+ +L +G Q GKT+ + F T+G + T + +++WD GQ
Sbjct: 6 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQ 65
Query: 76 PRFRSMWERYCRGVNAIV 93
RFRS+ Y R A V
Sbjct: 66 ERFRSLIPSYIRDSAAAV 83
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQ 75
++++ ++G + GKT+ + F + TVG + + ++ + +++WD GQ
Sbjct: 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 76 PRFRSMWERYCRGVNAIV 93
RF S+ Y R I+
Sbjct: 86 ERFNSITSAYYRSAKGII 103
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQ 75
+ +L +G Q GKT+ + F T+G + T V +++WD GQ
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 76 PRFRSMWERYCR 87
RFRS+ Y R
Sbjct: 61 ERFRSLIPSYIR 72
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQ 75
+ +L +G Q GKT+ + F T+G + T V +++WD GQ
Sbjct: 2 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 61
Query: 76 PRFRSMWERYCR 87
RFRS+ Y R
Sbjct: 62 ERFRSLIPSYIR 73
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPR 77
++ L+G GK+ ++ + +F+ + T+G F R I N IK +WD G R
Sbjct: 12 KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLER 71
Query: 78 FRSMWERYCRG-VNAIVWTGGLYIVSK 103
+R++ Y RG V A++ +Y +SK
Sbjct: 72 YRAITSAYYRGAVGALI----VYDISK 94
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMR--KITKGNVTIKVWDIGGQPRFRS 80
++G GK+ ++ +F D T+G F R +++ + +++WD GQ RFR+
Sbjct: 20 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 79
Query: 81 MWERYCRGV 89
+ Y RG
Sbjct: 80 VTRSYYRGA 88
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
Length = 179
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQ 75
+ +L +G Q GKT+ + F T+G + T V +++WD GQ
Sbjct: 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 73
Query: 76 PRFRSMWERYCR 87
RFRS+ Y R
Sbjct: 74 ERFRSLIPSYIR 85
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMR--KITKGNVTIKVWDIGGQPRFRS 80
++G GK+ ++ +F D T+G F R +++ + +++WD GQ RFR+
Sbjct: 35 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRA 94
Query: 81 MWERYCRGV 89
+ Y RG
Sbjct: 95 VTRSYYRGA 103
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPR 77
+L L+G +GK++ V QF + T+G F + + + T+K +WD GQ R
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 78 FRSMWERYCRGVNAIV 93
+ S+ Y RG A +
Sbjct: 74 YHSLAPMYYRGAAAAI 89
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGN--VTIKVWDIGGQPRFRS 80
++G +GK+ ++ +F D T+G F + I G V +++WD G RFRS
Sbjct: 13 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRS 72
Query: 81 MWERYCRGV 89
+ Y RG
Sbjct: 73 VTRSYYRGA 81
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGN--VTIKVWDIGGQP 76
+++ ++G GKT+ +N + +FS T+G F +++ + VT+++WD G
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 77 RFRSMWERYCRGVNAIV 93
RF+S+ + RG + V
Sbjct: 69 RFQSLGVAFYRGADCCV 85
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 60/194 (30%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI-----TKG---------NVT 66
++L +G GKTTF+ +F+ I TVG + R+ +G V
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 67 IKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWL 126
+++WD GQ RFRS+ + R +A+ G ++ + + L W+
Sbjct: 86 LQLWDTAGQERFRSLTTAFFR--DAM----GFLLMFDLTSQQSFLNVR---------NWM 130
Query: 127 SLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP-----NALDE 181
S L + +A E P I+++GNK DLP N
Sbjct: 131 SQL---------------------QANAYCENPD-----IVLIGNKADLPDQREVNERQA 164
Query: 182 KELIDRIMIDFWIT 195
+EL D+ I ++ T
Sbjct: 165 RELADKYGIPYFET 178
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI-----TKG---------NVT 66
++L +G GKTTF+ +F+ I TVG + R+ T+G V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 67 IKVWDIGGQPRFRSMWERYCR 87
+++WD G RFRS+ + R
Sbjct: 72 LQLWDTAGLERFRSLTTAFFR 92
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI-----TKG---------NVT 66
++L +G GKTTF+ +F+ I TVG + R+ T+G V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 67 IKVWDIGGQPRFRSMWERYCR 87
+++WD G RFRS+ + R
Sbjct: 72 LQLWDTAGLERFRSLTTAFFR 92
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK-----ITKG---------NVT 66
++L +G GKTTF+ +F+ I TVG + R+ T+G V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 67 IKVWDIGGQPRFRSMWERYCR 87
+++WD G RFRS+ + R
Sbjct: 72 LQLWDTAGLERFRSLTTAFFR 92
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQ 75
E+++ L+G GK++ + F ++ PT+G F + + N K +WD G
Sbjct: 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 65
Query: 76 PRFRSMWERYCRGVNAIV 93
RFR++ Y RG A +
Sbjct: 66 ERFRALAPMYYRGSAAAI 83
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 11 WFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT---KGNVTI 67
+F+ + ++ ++G +C GKT+ + G+FS+ PTV KI K +
Sbjct: 15 YFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHL 74
Query: 68 KVWDIGGQPRFRSMWERYCRGVNAIV 93
+ D GQ + + + GV+ V
Sbjct: 75 HLVDTAGQDEYSILPYSFIIGVHGYV 100
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI-----TKG---------NVT 66
++L +G GKTTF+ +F+ I TVG + R+ T+G V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 67 IKVWDIGGQPRFRSMWERYCR 87
+++WD G RFRS+ + R
Sbjct: 72 LQLWDTAGLERFRSLTTAFFR 92
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQ 75
+ +L +G Q GKT+ + F T+G + T + +++WD G
Sbjct: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGL 72
Query: 76 PRFRSMWERYCRGVNAIV 93
RFRS+ Y R A V
Sbjct: 73 ERFRSLIPSYIRDSAAAV 90
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQ 75
+ +L +G Q GKT+ + F T+G + T V +++WD G
Sbjct: 6 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGL 65
Query: 76 PRFRSMWERYCR 87
RFRS+ Y R
Sbjct: 66 ERFRSLIPSYIR 77
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 26 VGLQCSGKTTFVNVIASGQFSQDMIPTV--GFNMRKITKGN-VTIKVWDIGGQPRFRSMW 82
VG GKT + S F D +PTV F+ + GN V + +WD GQ + +
Sbjct: 12 VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLR 71
Query: 83 ERYCRGVNAIV 93
RG + +
Sbjct: 72 PLSYRGADVFI 82
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding
Protein Rhod
Length = 214
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 11 WFKSLFWKE------EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTV--GFNMRKITK 62
+F+S+ +E +++ LVG GKT+ + V A G F + PTV + + K
Sbjct: 19 YFQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVK 78
Query: 63 GN-VTIKVWDIGGQ 75
G V + +WD GQ
Sbjct: 79 GKPVHLHIWDTAGQ 92
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 22 ELTLVG-LQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPR 77
+L LVG +QC GKT + V+A + + +PTV N + + V + +WD G P
Sbjct: 13 KLVLVGDVQC-GKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 71
Query: 78 F 78
+
Sbjct: 72 Y 72
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 22 ELTLVG-LQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPR 77
+L LVG +QC GKT + V+A + + +PTV N + + V + +WD G P
Sbjct: 12 KLVLVGDVQC-GKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 70
Query: 78 F 78
+
Sbjct: 71 Y 71
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 22 ELTLVG-LQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPR 77
+L LVG +QC GKT + V+A + + +PTV N + + V + +WD G P
Sbjct: 29 KLVLVGDVQC-GKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87
Query: 78 F 78
+
Sbjct: 88 Y 88
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 26 VGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK-------------ITKGN-VTIKVWD 71
+G GKT+ + G+F+ I TVG + R+ + +G + +++WD
Sbjct: 17 LGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWD 76
Query: 72 IGGQPRFRSMWERYCR 87
G RFRS+ + R
Sbjct: 77 TAGLERFRSLTTAFFR 92
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 25 LVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKIT--KGNVTIKVWDIGGQPRFRS 80
++G GK+ + +F D+ V F R IT + +++WD GQ FRS
Sbjct: 15 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRS 74
Query: 81 MWERYCRGV 89
+ Y RG
Sbjct: 75 ITRSYYRGA 83
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQP 76
+ ++ +VG GKT ++V A F ++ +PTV N +I + + +WD G P
Sbjct: 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 66
Query: 77 RFRSM 81
+ ++
Sbjct: 67 YYDNV 71
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A
Rock-i:rhoe Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A
Rock-i:rhoe Complex Structure
Length = 200
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQP 76
+ ++ +VG GKT ++V A F ++ +PTV N +I + + +WD G P
Sbjct: 23 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 82
Query: 77 RFRSM 81
+ ++
Sbjct: 83 YYDNV 87
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQ 75
+ +L +G Q GKT+ + F T+G + T V +++WD G
Sbjct: 16 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGL 75
Query: 76 PRFRSMWERYCR 87
RFRS+ Y R
Sbjct: 76 ERFRSLIPSYIR 87
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQP 76
+ ++ +VG GKT ++V A F ++ +PTV N +I + + +WD G P
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 87
Query: 77 RFRSM 81
+ ++
Sbjct: 88 YYDNV 92
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 11 WFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTI 67
+F+S+ K+ L +VG GKT + V + +F + +PTV N ++ V +
Sbjct: 19 YFQSMIRKK---LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVEL 75
Query: 68 KVWDIGGQPRF 78
+WD GQ +
Sbjct: 76 ALWDTAGQEDY 86
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+PT G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 178 VPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 226
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 51 PTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
PT G + T ++ K++D+GGQ R W GV AI++ L
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVAL 213
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 54 GFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGV 89
G M I + +++WD GQ FRS+ Y RG
Sbjct: 59 GARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA 94
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNM---RKITKGNVTIKVWDIGGQPRF 78
+L +VG GKT + V + GQF + +PTV N ++ V + +WD GQ +
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTV--GFNMRKITKG-NVTIKVWDIGGQPR 77
++ VG GKT + S F D +PTV F+ + G V + +WD GQ
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQED 68
Query: 78 FRSMWERYCRGVNAIV 93
+ + RG + +
Sbjct: 69 YNRLRPLSYRGADVFI 84
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQ 75
+L +VG GKT + V + QF + +PTV N ++ V + +WD GQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 64
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQ 75
+L +VG GKT + V + QF + +PTV N ++ V + +WD GQ
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 63
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQ 75
+L +VG GKT + V + QF + +PTV N ++ V + +WD GQ
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 65
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQ 75
+L +VG GKT + V + QF + +PTV N ++ V + +WD GQ
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 64
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp
(Complex C)
Length = 185
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQ 75
+L +VG GKT + V + QF + +PTV N ++ V + +WD GQ
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 67
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQ 75
+L +VG GKT + V + QF + +PTV N ++ V + +WD GQ
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 65
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQ 75
+L +VG GKT + V + QF + +PTV N ++ V + +WD GQ
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 66
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQP 76
E +L +VG + GK+ + F + PT+ + RK I + + D GQ
Sbjct: 3 EYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 77 RFRSMWERYCR 87
+ +M ++Y R
Sbjct: 63 EYSAMRDQYMR 73
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNM---RKITKGNVTIKVWDIGGQ 75
+L +VG GKT + V + QF + +PTV N ++ V + +WD GQ
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQ 83
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNM---RKITKGNVTIKVWDIGGQ 75
+L +VG GKT + V + QF + +PTV N ++ V + +WD GQ
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQ 83
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQP 76
E +L +VG GK+ + F + PT+ + RK I + + D GQ
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 77 RFRSMWERYCR 87
+ +M ++Y R
Sbjct: 64 EYSAMRDQYMR 74
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQP 76
E +L +VG GK+ + F + PT+ + RK I + + D GQ
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 77 RFRSMWERYCR 87
+ +M ++Y R
Sbjct: 64 EYSAMRDQYMR 74
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTV--GFNMRKITKGN-VTIKVWDIGGQPR 77
++ VG GKT + S +F D IPTV F+ G V + +WD GQ
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED 69
Query: 78 FRSMWERYCRGVNAIV 93
+ + RG + V
Sbjct: 70 YSRLRPLSYRGADIFV 85
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQP 76
E +L +VG GK+ + F + PT+ + RK I + + D GQ
Sbjct: 3 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 77 RFRSMWERYCR 87
+ +M ++Y R
Sbjct: 63 EYSAMRDQYMR 73
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQ 75
+L +VG GKT + V + QF + +PTV N ++ V + +WD GQ
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 65
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQ 75
+L +VG GKT + V + QF + +PTV N ++ V + +WD GQ
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 61
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQ 75
+L +VG GKT + V + QF + +PTV N ++ V + +WD GQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 63
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQ 75
+L +VG GKT + V + QF + +PTV N ++ V + +WD GQ
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 61
>pdb|1CLU|A Chain A, H-Ras Complexed With
Diaminobenzophenone-Beta,Gamma-Imido- Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQP 76
E +L +VG GK+ + F + PT+ + RK I + + D GQ
Sbjct: 3 EYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 77 RFRSMWERYCR 87
+ +M ++Y R
Sbjct: 63 EYSAMRDQYMR 73
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With
Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQ 75
+L +VG GKT + V + QF + +PTV N ++ V + +WD GQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 63
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNM---RKITKGNVTIKVWDIGGQ 75
+L +VG GKT + V + QF + +PTV N ++ V + +WD GQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQ 63
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed
With Gdp
Length = 180
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQ 75
+L +VG GKT + V + QF +PTV N ++ V + +WD GQ
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQ 63
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQP 76
E +L +VG GK+ + F + PT+ + RK I + + D GQ
Sbjct: 3 EYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 77 RFRSMWERYCR 87
+ +M ++Y R
Sbjct: 63 EYSAMRDQYMR 73
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQ 75
+L +VG GKT + V + QF + +PTV N ++ V + +WD GQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 63
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTV--GFNMRKITKGN-VTIKVWDI 72
F + ++ +VG GKT + + FS + IPTV ++ + G V + +WD
Sbjct: 9 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDT 68
Query: 73 GGQPRFRSM 81
GQ + +
Sbjct: 69 AGQEDYDRL 77
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIP 51
+++ +VGL GK+TF NV+ + Q S + P
Sbjct: 23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFP 53
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 150 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 198
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 147 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 195
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 149 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 197
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 148 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 196
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 152 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 200
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 148 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 196
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 153 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 201
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 153 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 201
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 148 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 196
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 150 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 198
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGG 74
K+ +++ +VG GKT + + G+ +PTV N + K + +WD G
Sbjct: 20 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 79
Query: 75 QPRFRSM 81
Q + +
Sbjct: 80 QEEYDRL 86
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 154 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 202
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 64 NVTIKVWDIGGQPRFRSMWERYCRG 88
N+ +WD GQ R+ S+ Y RG
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRG 116
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 155 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 203
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGG 74
K+ +++ +VG GKT + + G+ +PTV N + K + +WD G
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80
Query: 75 QPRFRSM 81
Q + +
Sbjct: 81 QEEYDRL 87
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G + + ++ +++D+GGQ R W GV AI++ L
Sbjct: 181 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 229
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 155 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 203
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 179 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 227
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 226
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G + + ++ +++D+GGQ R W GV AI++ L
Sbjct: 150 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 198
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 185 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 233
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 155 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 203
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 226
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 181 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 229
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
+ T G T ++ K++D+GGQ R W GV AI++ L
Sbjct: 178 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 226
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLE 146
R N + L + + IKR+ + E DL P +L QL+K++ + +D D LE
Sbjct: 97 RAQNCNILLSRLKLSNDEIKRAILTMDEQEDL----PK--DMLEQLLKFVPEKSDIDLLE 150
Query: 147 ASRNELHAL 155
++EL +
Sbjct: 151 EHKHELDRM 159
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 20/69 (28%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK------------GNVTIKV 69
+L L+G SGK++ ++I S F+ R++ GN+T+ +
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSN--------YSAFDTRRLGATIDVEHSHLRFLGNMTLNL 59
Query: 70 WDIGGQPRF 78
WD GGQ F
Sbjct: 60 WDCGGQDVF 68
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLE 146
R N + L + + IKR+ + E DL P +L QL+K++ + +D D LE
Sbjct: 99 RAQNCNILLSRLKLSNDEIKRAILTMDEQEDL----PK--DMLEQLLKFVPEKSDIDLLE 152
Query: 147 ASRNELHAL 155
++EL +
Sbjct: 153 EHKHELDRM 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,275,633
Number of Sequences: 62578
Number of extensions: 414183
Number of successful extensions: 1561
Number of sequences better than 100.0: 267
Number of HSP's better than 100.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 367
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)