Query psy2970
Match_columns 329
No_of_seqs 272 out of 2122
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 22:14:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 4.9E-32 1.1E-36 243.4 14.6 151 18-210 7-168 (205)
2 KOG0092|consensus 100.0 9.5E-30 2.1E-34 227.9 13.6 152 18-211 3-163 (200)
3 KOG0078|consensus 100.0 3E-29 6.6E-34 227.4 15.9 153 17-211 9-171 (207)
4 KOG0094|consensus 100.0 3.6E-29 7.8E-34 224.9 14.8 153 18-211 20-181 (221)
5 PLN00223 ADP-ribosylation fact 100.0 2.6E-28 5.7E-33 216.2 17.4 165 1-210 1-173 (181)
6 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 5.1E-28 1.1E-32 215.6 16.2 149 18-209 3-174 (182)
7 cd01875 RhoG RhoG subfamily. 100.0 1.1E-27 2.3E-32 213.6 16.7 149 19-210 2-172 (191)
8 cd04131 Rnd Rnd subfamily. Th 100.0 1E-27 2.3E-32 212.3 16.2 147 20-209 1-170 (178)
9 KOG0080|consensus 100.0 2.8E-28 6E-33 213.6 12.3 142 20-202 11-161 (209)
10 cd04133 Rop_like Rop subfamily 100.0 1.1E-27 2.5E-32 212.5 16.4 148 21-211 2-169 (176)
11 cd04136 Rap_like Rap-like subf 100.0 1.9E-27 4E-32 202.3 16.9 151 20-211 1-159 (163)
12 KOG0098|consensus 100.0 6.7E-28 1.5E-32 215.4 14.5 151 18-210 4-163 (216)
13 cd04121 Rab40 Rab40 subfamily. 100.0 1.7E-27 3.8E-32 213.7 17.2 151 18-211 4-163 (189)
14 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.5E-27 5.4E-32 219.9 18.4 150 18-210 11-183 (232)
15 cd04175 Rap1 Rap1 subgroup. T 100.0 2.5E-27 5.5E-32 203.1 16.9 150 20-210 1-158 (164)
16 cd04120 Rab12 Rab12 subfamily. 100.0 4E-27 8.7E-32 213.7 18.7 148 21-210 1-158 (202)
17 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.4E-27 5.2E-32 207.8 16.7 150 20-210 2-159 (172)
18 cd04138 H_N_K_Ras_like H-Ras/N 100.0 5.4E-27 1.2E-31 198.1 17.2 150 20-210 1-157 (162)
19 cd04127 Rab27A Rab27a subfamil 99.9 5.5E-27 1.2E-31 203.9 17.0 151 19-210 3-172 (180)
20 PTZ00133 ADP-ribosylation fact 99.9 7.6E-27 1.6E-31 206.8 17.5 157 12-210 9-173 (182)
21 cd04122 Rab14 Rab14 subfamily. 99.9 8.7E-27 1.9E-31 200.8 16.8 149 20-210 2-159 (166)
22 KOG0394|consensus 99.9 9.2E-28 2E-32 214.1 10.8 152 18-210 7-174 (210)
23 KOG0075|consensus 99.9 1E-27 2.3E-32 207.3 10.5 167 1-208 1-175 (186)
24 smart00177 ARF ARF-like small 99.9 1.1E-26 2.3E-31 204.0 16.8 155 15-211 8-170 (175)
25 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.1E-26 2.4E-31 204.3 16.4 147 21-210 2-170 (175)
26 cd04176 Rap2 Rap2 subgroup. T 99.9 1.6E-26 3.5E-31 197.6 16.6 151 20-211 1-159 (163)
27 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 2.3E-26 5E-31 205.8 17.7 150 21-211 1-164 (201)
28 PTZ00369 Ras-like protein; Pro 99.9 2.5E-26 5.5E-31 203.6 17.5 153 18-211 3-163 (189)
29 cd04119 RJL RJL (RabJ-Like) su 99.9 2.5E-26 5.4E-31 195.1 16.6 149 21-210 1-162 (168)
30 cd04149 Arf6 Arf6 subfamily. 99.9 1.3E-26 2.9E-31 202.3 15.4 153 16-210 5-165 (168)
31 KOG0079|consensus 99.9 2.4E-27 5.1E-32 205.5 10.3 149 20-211 8-165 (198)
32 KOG0087|consensus 99.9 6.5E-27 1.4E-31 212.3 13.4 148 18-207 12-168 (222)
33 cd04117 Rab15 Rab15 subfamily. 99.9 3.1E-26 6.7E-31 197.7 16.9 148 21-210 1-157 (161)
34 cd01865 Rab3 Rab3 subfamily. 99.9 3.7E-26 8E-31 197.0 16.9 149 21-211 2-159 (165)
35 cd04145 M_R_Ras_like M-Ras/R-R 99.9 4.5E-26 9.9E-31 193.9 17.3 150 20-210 2-159 (164)
36 smart00173 RAS Ras subfamily o 99.9 3.8E-26 8.3E-31 195.1 16.6 149 21-210 1-157 (164)
37 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 5.1E-26 1.1E-30 199.0 16.9 150 21-211 1-161 (170)
38 cd04150 Arf1_5_like Arf1-Arf5- 99.9 3.8E-26 8.3E-31 197.3 15.7 148 21-210 1-156 (159)
39 cd04106 Rab23_lke Rab23-like s 99.9 7.5E-26 1.6E-30 192.6 16.8 148 21-211 1-159 (162)
40 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 4.7E-26 1E-30 209.9 16.4 149 20-210 1-172 (222)
41 cd01871 Rac1_like Rac1-like su 99.9 8E-26 1.7E-30 198.7 16.5 148 21-211 2-171 (174)
42 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.1E-25 2.4E-30 193.3 17.0 150 20-211 2-160 (166)
43 cd04140 ARHI_like ARHI subfami 99.9 1.1E-25 2.3E-30 194.1 17.0 150 20-210 1-160 (165)
44 PF00071 Ras: Ras family; Int 99.9 7E-26 1.5E-30 193.1 15.5 146 22-209 1-155 (162)
45 cd04144 Ras2 Ras2 subfamily. 99.9 5.7E-26 1.2E-30 201.5 15.3 149 22-211 1-159 (190)
46 cd01867 Rab8_Rab10_Rab13_like 99.9 1.2E-25 2.6E-30 194.3 16.6 149 20-210 3-160 (167)
47 cd04126 Rab20 Rab20 subfamily. 99.9 1.2E-25 2.5E-30 206.9 17.5 148 21-211 1-186 (220)
48 cd04115 Rab33B_Rab33A Rab33B/R 99.9 1.4E-25 3.1E-30 194.6 16.9 150 20-210 2-164 (170)
49 cd04134 Rho3 Rho3 subfamily. 99.9 9.3E-26 2E-30 200.3 16.1 147 21-210 1-169 (189)
50 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1.2E-25 2.5E-30 199.7 16.1 147 21-210 1-161 (182)
51 cd04116 Rab9 Rab9 subfamily. 99.9 2.1E-25 4.5E-30 192.3 17.1 151 19-210 4-166 (170)
52 cd04109 Rab28 Rab28 subfamily. 99.9 1.6E-25 3.5E-30 203.0 17.0 150 21-211 1-162 (215)
53 cd04132 Rho4_like Rho4-like su 99.9 2E-25 4.2E-30 195.9 16.9 148 21-211 1-163 (187)
54 cd04124 RabL2 RabL2 subfamily. 99.9 2.4E-25 5.1E-30 191.9 17.0 147 21-210 1-153 (161)
55 cd00877 Ran Ran (Ras-related n 99.9 2.5E-25 5.4E-30 193.4 16.8 148 21-211 1-155 (166)
56 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1.3E-25 2.8E-30 195.1 14.9 144 22-208 1-159 (164)
57 cd04111 Rab39 Rab39 subfamily. 99.9 2.4E-25 5.1E-30 202.2 16.8 151 20-211 2-162 (211)
58 cd04110 Rab35 Rab35 subfamily. 99.9 3.3E-25 7.1E-30 198.5 17.4 151 18-211 4-163 (199)
59 PLN03071 GTP-binding nuclear p 99.9 2.3E-25 4.9E-30 203.6 16.4 150 18-210 11-167 (219)
60 cd01868 Rab11_like Rab11-like. 99.9 3.7E-25 7.9E-30 189.5 16.7 149 20-210 3-160 (165)
61 cd04125 RabA_like RabA-like su 99.9 3.6E-25 7.8E-30 195.3 17.0 149 21-211 1-158 (188)
62 KOG0081|consensus 99.9 5.1E-27 1.1E-31 205.5 5.1 164 21-225 10-195 (219)
63 KOG0093|consensus 99.9 9.3E-26 2E-30 195.4 12.3 146 20-207 21-175 (193)
64 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 5.1E-25 1.1E-29 192.6 17.1 158 12-211 7-172 (174)
65 cd04177 RSR1 RSR1 subgroup. R 99.9 5.7E-25 1.2E-29 190.1 16.7 150 20-210 1-159 (168)
66 KOG0095|consensus 99.9 9.6E-26 2.1E-30 195.9 11.8 150 19-210 6-164 (213)
67 cd04157 Arl6 Arl6 subfamily. 99.9 4.8E-25 1E-29 187.2 15.9 149 22-211 1-160 (162)
68 smart00174 RHO Rho (Ras homolo 99.9 5E-25 1.1E-29 190.3 15.9 145 23-210 1-167 (174)
69 cd04113 Rab4 Rab4 subfamily. 99.9 7.2E-25 1.6E-29 187.0 16.5 149 21-211 1-158 (161)
70 cd01873 RhoBTB RhoBTB subfamil 99.9 5.2E-25 1.1E-29 198.4 15.9 146 20-210 2-191 (195)
71 cd01864 Rab19 Rab19 subfamily. 99.9 9.3E-25 2E-29 187.7 16.6 151 19-211 2-162 (165)
72 cd04154 Arl2 Arl2 subfamily. 99.9 6.5E-25 1.4E-29 190.9 15.7 152 17-210 11-170 (173)
73 cd04103 Centaurin_gamma Centau 99.9 8.3E-25 1.8E-29 189.9 16.0 144 21-210 1-154 (158)
74 cd01866 Rab2 Rab2 subfamily. 99.9 1.3E-24 2.8E-29 188.2 17.1 149 20-210 4-161 (168)
75 cd04158 ARD1 ARD1 subfamily. 99.9 8.1E-25 1.8E-29 190.2 15.8 147 22-210 1-156 (169)
76 cd04112 Rab26 Rab26 subfamily. 99.9 1E-24 2.3E-29 193.6 16.1 149 21-211 1-159 (191)
77 KOG0086|consensus 99.9 2E-25 4.4E-30 194.5 11.0 149 21-211 10-168 (214)
78 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.9E-24 4.2E-29 184.5 16.7 148 21-211 1-160 (164)
79 KOG0091|consensus 99.9 3E-25 6.6E-30 195.0 11.8 152 18-210 6-168 (213)
80 cd04118 Rab24 Rab24 subfamily. 99.9 2.4E-24 5.2E-29 190.2 17.0 148 21-211 1-162 (193)
81 cd01861 Rab6 Rab6 subfamily. 99.9 2.6E-24 5.6E-29 182.9 16.6 149 21-211 1-158 (161)
82 cd01863 Rab18 Rab18 subfamily. 99.9 3.1E-24 6.7E-29 182.8 17.0 149 21-210 1-157 (161)
83 cd04146 RERG_RasL11_like RERG/ 99.9 1.6E-24 3.4E-29 186.3 15.1 148 22-210 1-159 (165)
84 cd01860 Rab5_related Rab5-rela 99.9 3.5E-24 7.5E-29 182.5 17.0 150 20-211 1-159 (163)
85 cd04130 Wrch_1 Wrch-1 subfamil 99.9 2E-24 4.4E-29 187.8 15.7 147 21-210 1-169 (173)
86 PLN03110 Rab GTPase; Provision 99.9 3.1E-24 6.7E-29 195.4 17.2 151 19-211 11-170 (216)
87 cd01892 Miro2 Miro2 subfamily. 99.9 2.6E-24 5.6E-29 187.8 15.8 150 18-211 2-162 (169)
88 cd04151 Arl1 Arl1 subfamily. 99.9 2.4E-24 5.2E-29 184.2 15.2 148 22-211 1-156 (158)
89 cd04139 RalA_RalB RalA/RalB su 99.9 4.2E-24 9E-29 181.1 16.5 149 21-210 1-157 (164)
90 smart00176 RAN Ran (Ras-relate 99.9 2.3E-24 5E-29 195.4 15.8 143 26-211 1-150 (200)
91 cd04135 Tc10 TC10 subfamily. 99.9 2.9E-24 6.4E-29 185.5 15.6 147 21-210 1-169 (174)
92 smart00175 RAB Rab subfamily o 99.9 4.8E-24 1E-28 181.1 16.5 149 21-211 1-158 (164)
93 cd00879 Sar1 Sar1 subfamily. 99.9 6.4E-24 1.4E-28 186.8 17.6 163 5-211 6-187 (190)
94 cd04142 RRP22 RRP22 subfamily. 99.9 3.7E-24 8.1E-29 193.0 16.2 150 21-211 1-170 (198)
95 KOG0395|consensus 99.9 1.7E-24 3.6E-29 196.3 13.7 150 19-209 2-159 (196)
96 smart00178 SAR Sar1p-like memb 99.9 1.1E-23 2.4E-28 186.5 17.4 153 16-210 13-180 (184)
97 cd01862 Rab7 Rab7 subfamily. 99.9 1.2E-23 2.5E-28 180.4 16.8 150 21-211 1-163 (172)
98 PLN03108 Rab family protein; P 99.9 9.7E-24 2.1E-28 191.1 17.2 150 19-210 5-163 (210)
99 cd04123 Rab21 Rab21 subfamily. 99.9 1.2E-23 2.6E-28 177.6 16.4 149 21-211 1-158 (162)
100 PLN03118 Rab family protein; P 99.9 1.7E-23 3.8E-28 188.7 17.8 153 17-211 11-173 (211)
101 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.8E-23 3.9E-28 190.1 17.9 138 21-199 1-174 (202)
102 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.1E-23 2.3E-28 179.3 15.1 148 22-211 1-158 (160)
103 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.4E-23 3E-28 178.6 15.8 148 22-211 1-156 (158)
104 cd01870 RhoA_like RhoA-like su 99.9 1.1E-23 2.5E-28 181.9 15.5 149 20-211 1-171 (175)
105 cd04159 Arl10_like Arl10-like 99.9 1.4E-23 3.1E-28 175.1 15.3 149 22-211 1-157 (159)
106 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.3E-23 2.9E-28 182.7 15.6 137 22-200 1-148 (167)
107 cd04143 Rhes_like Rhes_like su 99.9 1.2E-23 2.6E-28 196.6 15.9 150 21-211 1-167 (247)
108 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.7E-23 3.8E-28 184.8 16.0 151 19-211 2-166 (183)
109 cd04137 RheB Rheb (Ras Homolog 99.9 1.9E-23 4E-28 182.0 15.6 150 21-211 2-159 (180)
110 PF00025 Arf: ADP-ribosylation 99.9 3.4E-23 7.5E-28 182.8 16.9 157 10-208 3-169 (175)
111 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2.5E-23 5.3E-28 178.2 15.2 148 22-210 1-164 (167)
112 cd04148 RGK RGK subfamily. Th 99.9 2.9E-23 6.3E-28 190.0 16.3 147 21-210 1-158 (221)
113 cd00154 Rab Rab family. Rab G 99.9 9.1E-23 2E-27 169.9 16.4 148 21-210 1-157 (159)
114 KOG0088|consensus 99.9 2.1E-24 4.5E-29 189.1 6.7 150 19-210 12-170 (218)
115 cd00157 Rho Rho (Ras homology) 99.9 7.4E-23 1.6E-27 175.3 15.6 147 21-210 1-168 (171)
116 cd00876 Ras Ras family. The R 99.9 7.9E-23 1.7E-27 172.3 15.5 149 22-211 1-157 (160)
117 KOG0083|consensus 99.9 1.1E-24 2.4E-29 186.4 3.2 143 24-208 1-154 (192)
118 cd04114 Rab30 Rab30 subfamily. 99.9 2.3E-22 5.1E-27 172.5 17.2 152 18-211 5-165 (169)
119 cd04155 Arl3 Arl3 subfamily. 99.9 3.1E-22 6.7E-27 172.7 16.9 152 18-211 12-171 (173)
120 cd04129 Rho2 Rho2 subfamily. 99.9 1.7E-22 3.8E-27 178.8 15.7 149 20-211 1-169 (187)
121 cd01893 Miro1 Miro1 subfamily. 99.9 2.1E-22 4.6E-27 174.0 15.7 148 21-211 1-160 (166)
122 cd04147 Ras_dva Ras-dva subfam 99.9 1.7E-22 3.8E-27 180.5 15.7 149 22-211 1-159 (198)
123 PTZ00132 GTP-binding nuclear p 99.9 1.2E-21 2.5E-26 177.1 17.4 150 18-210 7-163 (215)
124 KOG0070|consensus 99.9 2E-22 4.4E-27 179.6 12.0 162 1-207 1-170 (181)
125 KOG0097|consensus 99.9 2.2E-22 4.9E-27 173.8 11.7 150 19-210 10-169 (215)
126 KOG0073|consensus 99.9 3.5E-21 7.6E-26 169.2 15.1 145 17-203 13-166 (185)
127 PLN00023 GTP-binding protein; 99.9 2.9E-21 6.2E-26 187.3 15.7 131 19-190 20-189 (334)
128 KOG0393|consensus 99.9 3.3E-22 7.1E-27 181.4 8.5 147 19-208 3-172 (198)
129 cd01897 NOG NOG1 is a nucleola 99.8 8.8E-20 1.9E-24 156.4 15.4 147 22-211 2-164 (168)
130 KOG0071|consensus 99.8 4E-20 8.7E-25 159.3 12.9 152 12-205 9-168 (180)
131 TIGR00231 small_GTP small GTP- 99.8 2.2E-19 4.7E-24 148.0 16.1 149 20-210 1-159 (161)
132 cd01890 LepA LepA subfamily. 99.8 1.3E-19 2.8E-24 157.1 15.1 144 22-211 2-173 (179)
133 cd04171 SelB SelB subfamily. 99.8 1.8E-19 4E-24 152.6 15.1 143 21-211 1-162 (164)
134 TIGR02528 EutP ethanolamine ut 99.8 4.9E-20 1.1E-24 154.6 11.2 129 22-210 2-140 (142)
135 cd01898 Obg Obg subfamily. Th 99.8 3.3E-19 7.1E-24 152.8 15.4 149 22-211 2-167 (170)
136 PRK04213 GTP-binding protein; 99.8 1.1E-19 2.3E-24 161.7 10.8 147 18-211 7-188 (201)
137 COG1100 GTPase SAR1 and relate 99.8 8.3E-19 1.8E-23 157.2 15.1 118 19-178 4-126 (219)
138 KOG4252|consensus 99.8 3.2E-20 7E-25 165.6 4.9 149 18-209 18-175 (246)
139 PF08477 Miro: Miro-like prote 99.8 7.2E-19 1.6E-23 143.3 11.4 110 22-174 1-119 (119)
140 PTZ00099 rab6; Provisional 99.8 1.1E-18 2.4E-23 155.0 13.3 127 43-211 3-138 (176)
141 KOG0076|consensus 99.8 2.2E-19 4.7E-24 159.3 8.1 161 1-205 1-177 (197)
142 cd01878 HflX HflX subfamily. 99.8 2.3E-18 5E-23 153.7 14.7 152 18-211 39-201 (204)
143 cd00882 Ras_like_GTPase Ras-li 99.8 2.6E-18 5.7E-23 139.1 13.7 144 25-210 1-155 (157)
144 cd01879 FeoB Ferrous iron tran 99.8 2.6E-18 5.7E-23 144.9 14.1 139 25-211 1-153 (158)
145 TIGR00450 mnmE_trmE_thdF tRNA 99.8 1.2E-17 2.7E-22 168.2 18.1 135 17-200 200-346 (442)
146 cd01881 Obg_like The Obg-like 99.8 8.3E-18 1.8E-22 144.3 13.4 146 25-211 1-173 (176)
147 cd01891 TypA_BipA TypA (tyrosi 99.8 1.1E-17 2.4E-22 148.9 14.6 138 22-205 4-172 (194)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 2.4E-17 5.2E-22 140.7 15.3 144 22-211 2-162 (168)
149 cd01894 EngA1 EngA1 subfamily. 99.8 2.3E-17 5.1E-22 138.4 14.7 142 24-211 1-154 (157)
150 cd04164 trmE TrmE (MnmE, ThdF, 99.8 2.6E-17 5.7E-22 137.8 14.7 141 21-211 2-153 (157)
151 PRK15494 era GTPase Era; Provi 99.7 3.2E-17 6.9E-22 159.9 16.5 148 18-211 50-212 (339)
152 PRK12299 obgE GTPase CgtA; Rev 99.7 3.7E-17 7.9E-22 159.5 16.4 150 21-211 159-324 (335)
153 PF02421 FeoB_N: Ferrous iron 99.7 1.6E-17 3.4E-22 146.1 11.9 142 21-210 1-156 (156)
154 TIGR03156 GTP_HflX GTP-binding 99.7 3.8E-17 8.3E-22 160.2 15.1 149 19-211 188-348 (351)
155 TIGR00436 era GTP-binding prot 99.7 6.6E-17 1.4E-21 152.2 15.9 143 22-211 2-160 (270)
156 KOG0074|consensus 99.7 1.2E-17 2.7E-22 144.2 9.7 133 17-191 14-147 (185)
157 TIGR02729 Obg_CgtA Obg family 99.7 1.1E-16 2.4E-21 155.8 16.5 150 21-211 158-325 (329)
158 cd00881 GTP_translation_factor 99.7 1.7E-16 3.6E-21 137.4 15.8 144 22-211 1-183 (189)
159 PRK05291 trmE tRNA modificatio 99.7 1.1E-16 2.3E-21 161.6 16.3 143 18-211 213-366 (449)
160 cd04105 SR_beta Signal recogni 99.7 5.7E-17 1.2E-21 146.8 12.8 118 22-181 2-127 (203)
161 cd01895 EngA2 EngA2 subfamily. 99.7 3.6E-16 7.8E-21 132.5 16.0 146 20-211 2-171 (174)
162 PRK15467 ethanolamine utilizat 99.7 8.7E-17 1.9E-21 139.9 12.3 133 22-211 3-143 (158)
163 cd01889 SelB_euk SelB subfamil 99.7 3.1E-16 6.7E-21 139.3 14.8 146 21-212 1-183 (192)
164 PRK03003 GTP-binding protein D 99.7 2.7E-16 5.8E-21 159.3 15.9 147 18-211 36-195 (472)
165 KOG0072|consensus 99.7 3.9E-17 8.5E-22 141.4 8.1 162 1-207 1-171 (182)
166 TIGR03594 GTPase_EngA ribosome 99.7 1.5E-15 3.2E-20 150.8 20.5 147 19-211 171-340 (429)
167 KOG3883|consensus 99.7 4.2E-16 9.2E-21 136.3 14.4 153 18-211 7-171 (198)
168 cd04163 Era Era subfamily. Er 99.7 7.2E-16 1.6E-20 129.0 15.5 147 19-211 2-165 (168)
169 PRK12297 obgE GTPase CgtA; Rev 99.7 6.4E-16 1.4E-20 155.1 17.2 149 22-211 160-323 (424)
170 PRK00454 engB GTP-binding prot 99.7 8.4E-16 1.8E-20 135.3 15.4 155 13-211 17-190 (196)
171 PRK03003 GTP-binding protein D 99.7 6.8E-16 1.5E-20 156.4 15.9 148 19-212 210-379 (472)
172 PRK00093 GTP-binding protein D 99.7 8.1E-16 1.8E-20 153.2 15.9 144 21-211 2-158 (435)
173 PRK11058 GTPase HflX; Provisio 99.7 8.3E-16 1.8E-20 154.4 15.4 149 21-211 198-358 (426)
174 TIGR03598 GTPase_YsxC ribosome 99.7 1E-15 2.2E-20 134.6 13.4 139 15-202 13-177 (179)
175 KOG0096|consensus 99.7 9.4E-17 2E-21 144.3 6.3 143 20-205 10-159 (216)
176 TIGR03594 GTPase_EngA ribosome 99.7 1.2E-15 2.7E-20 151.3 14.1 144 22-211 1-156 (429)
177 PRK12296 obgE GTPase CgtA; Rev 99.7 2.1E-15 4.5E-20 153.9 15.8 150 20-210 159-335 (500)
178 PRK09554 feoB ferrous iron tra 99.6 2.9E-15 6.3E-20 160.0 17.1 145 19-211 2-164 (772)
179 TIGR00437 feoB ferrous iron tr 99.6 1.4E-15 3.1E-20 158.2 14.2 137 27-211 1-151 (591)
180 PRK00089 era GTPase Era; Revie 99.6 5.5E-15 1.2E-19 139.9 16.3 147 19-211 4-167 (292)
181 TIGR01393 lepA GTP-binding pro 99.6 3.9E-15 8.5E-20 155.1 16.2 145 21-211 4-176 (595)
182 cd00880 Era_like Era (E. coli 99.6 3.4E-15 7.4E-20 122.8 12.2 141 25-211 1-160 (163)
183 PRK12298 obgE GTPase CgtA; Rev 99.6 1.3E-14 2.9E-19 144.2 15.9 148 22-210 161-328 (390)
184 KOG1673|consensus 99.6 1.6E-15 3.6E-20 132.9 8.1 146 19-207 19-178 (205)
185 TIGR00487 IF-2 translation ini 99.6 1.2E-14 2.6E-19 151.2 16.1 148 18-211 85-246 (587)
186 cd01896 DRG The developmentall 99.6 1.5E-14 3.3E-19 134.0 14.9 72 22-93 2-82 (233)
187 PRK00093 GTP-binding protein D 99.6 2.4E-14 5.2E-19 142.7 17.4 147 19-211 172-340 (435)
188 cd01888 eIF2_gamma eIF2-gamma 99.6 1.7E-14 3.7E-19 130.2 14.2 147 21-211 1-195 (203)
189 KOG0077|consensus 99.6 2.1E-15 4.6E-20 133.2 7.7 140 8-189 3-147 (193)
190 COG1159 Era GTPase [General fu 99.6 1.2E-14 2.5E-19 138.8 13.1 147 19-211 5-168 (298)
191 PRK09518 bifunctional cytidyla 99.6 2.3E-14 4.9E-19 152.1 15.5 146 20-211 450-617 (712)
192 TIGR00475 selB selenocysteine- 99.6 2.4E-14 5.3E-19 148.8 14.6 141 21-210 1-161 (581)
193 PRK09518 bifunctional cytidyla 99.6 3.5E-14 7.6E-19 150.7 15.7 144 21-211 276-432 (712)
194 PF00009 GTP_EFTU: Elongation 99.6 1.8E-14 3.9E-19 127.9 10.7 148 18-211 1-183 (188)
195 COG1084 Predicted GTPase [Gene 99.6 9.5E-14 2.1E-18 134.1 16.1 168 5-207 151-328 (346)
196 TIGR00483 EF-1_alpha translati 99.6 2.1E-14 4.5E-19 143.6 12.0 145 17-204 4-196 (426)
197 COG2229 Predicted GTPase [Gene 99.6 9.9E-14 2.1E-18 124.2 15.0 149 17-210 7-173 (187)
198 PRK05306 infB translation init 99.6 2.6E-14 5.7E-19 152.7 13.3 148 18-211 288-448 (787)
199 PRK12317 elongation factor 1-a 99.6 4.1E-14 9E-19 141.3 14.0 146 17-205 3-195 (425)
200 cd04166 CysN_ATPS CysN_ATPS su 99.6 3.7E-14 8E-19 128.5 12.1 138 22-204 1-183 (208)
201 PRK05433 GTP-binding protein L 99.5 1.1E-13 2.4E-18 144.4 16.5 145 21-211 8-180 (600)
202 cd01876 YihA_EngB The YihA (En 99.5 1.1E-13 2.4E-18 116.2 13.1 141 22-211 1-167 (170)
203 KOG4423|consensus 99.5 2.3E-16 5.1E-21 141.6 -3.6 139 20-199 25-178 (229)
204 COG0486 ThdF Predicted GTPase 99.5 1.6E-13 3.5E-18 137.5 15.5 149 17-212 214-373 (454)
205 CHL00189 infB translation init 99.5 1.1E-13 2.4E-18 146.9 15.1 148 18-211 242-406 (742)
206 KOG1489|consensus 99.5 8.7E-14 1.9E-18 133.8 10.8 157 21-211 197-363 (366)
207 COG0370 FeoB Fe2+ transport sy 99.5 1.1E-13 2.5E-18 143.6 11.7 145 19-211 2-160 (653)
208 TIGR00491 aIF-2 translation in 99.5 2.4E-13 5.2E-18 141.6 14.2 142 20-210 4-211 (590)
209 cd04169 RF3 RF3 subfamily. Pe 99.5 3.8E-13 8.2E-18 127.4 13.7 129 21-195 3-158 (267)
210 COG1160 Predicted GTPases [Gen 99.5 4.4E-13 9.6E-18 134.1 14.6 145 21-211 4-161 (444)
211 TIGR03680 eif2g_arch translati 99.5 4.5E-13 9.7E-18 133.6 14.0 151 18-212 2-193 (406)
212 cd04168 TetM_like Tet(M)-like 99.5 7.9E-13 1.7E-17 123.0 14.5 124 22-191 1-147 (237)
213 TIGR01394 TypA_BipA GTP-bindin 99.4 1.4E-12 3.1E-17 136.0 15.6 133 22-200 3-166 (594)
214 cd00066 G-alpha G protein alph 99.4 4.9E-13 1.1E-17 129.4 10.8 86 51-177 147-242 (317)
215 smart00275 G_alpha G protein a 99.4 5.6E-13 1.2E-17 130.5 10.4 87 50-177 169-265 (342)
216 cd01883 EF1_alpha Eukaryotic e 99.4 9.2E-13 2E-17 120.4 11.2 139 22-204 1-194 (219)
217 PRK10218 GTP-binding protein; 99.4 4.6E-12 1E-16 132.4 17.3 136 20-201 5-171 (607)
218 PF09439 SRPRB: Signal recogni 99.4 5.9E-13 1.3E-17 119.8 9.2 120 19-180 2-129 (181)
219 cd04167 Snu114p Snu114p subfam 99.4 2.8E-12 6E-17 116.3 13.6 109 22-176 2-136 (213)
220 cd01884 EF_Tu EF-Tu subfamily. 99.4 2.4E-12 5.3E-17 116.4 13.0 137 20-202 2-170 (195)
221 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 4.7E-12 1E-16 118.1 15.1 149 22-212 1-174 (232)
222 cd04170 EF-G_bact Elongation f 99.4 4.2E-12 9E-17 119.3 14.7 129 22-196 1-152 (268)
223 KOG1707|consensus 99.4 9.3E-13 2E-17 134.6 10.6 150 17-207 6-168 (625)
224 PRK10512 selenocysteinyl-tRNA- 99.4 1.6E-12 3.6E-17 136.0 12.8 145 22-212 2-163 (614)
225 cd04165 GTPBP1_like GTPBP1-lik 99.4 4.3E-12 9.4E-17 117.2 13.8 146 22-213 1-221 (224)
226 PRK04004 translation initiatio 99.4 3.3E-12 7.2E-17 133.1 14.6 109 19-176 5-136 (586)
227 PRK04000 translation initiatio 99.4 3.7E-12 7.9E-17 127.4 14.3 152 17-212 6-198 (411)
228 cd01850 CDC_Septin CDC/Septin. 99.4 5.9E-12 1.3E-16 119.8 14.2 147 20-199 4-186 (276)
229 PF01926 MMR_HSR1: 50S ribosom 99.4 1.1E-11 2.4E-16 101.3 13.3 104 22-172 1-116 (116)
230 COG1160 Predicted GTPases [Gen 99.4 5.3E-12 1.2E-16 126.4 13.1 146 20-211 178-347 (444)
231 cd01899 Ygr210 Ygr210 subfamil 99.4 1.3E-11 2.9E-16 119.8 14.6 71 23-93 1-104 (318)
232 cd04104 p47_IIGP_like p47 (47- 99.3 7.8E-12 1.7E-16 112.4 11.4 74 20-93 1-85 (197)
233 PRK12736 elongation factor Tu; 99.3 3.8E-11 8.2E-16 119.4 16.2 138 17-200 9-178 (394)
234 TIGR00485 EF-Tu translation el 99.3 2E-11 4.3E-16 121.2 14.0 138 17-200 9-178 (394)
235 KOG1490|consensus 99.3 3.4E-12 7.4E-17 128.7 8.5 146 20-199 168-325 (620)
236 PRK13351 elongation factor G; 99.3 2.3E-11 5E-16 128.6 14.9 127 19-191 7-156 (687)
237 cd01886 EF-G Elongation factor 99.3 1.6E-11 3.5E-16 116.5 11.7 132 22-199 1-159 (270)
238 PRK12735 elongation factor Tu; 99.3 4E-11 8.6E-16 119.3 14.6 138 17-200 9-178 (396)
239 PRK00741 prfC peptide chain re 99.3 1.7E-11 3.6E-16 126.4 12.1 127 19-191 9-162 (526)
240 PF10662 PduV-EutP: Ethanolami 99.3 2.8E-11 6.2E-16 105.1 11.5 131 22-211 3-142 (143)
241 cd01885 EF2 EF2 (for archaea a 99.3 3.7E-11 8.1E-16 111.1 12.6 109 22-176 2-138 (222)
242 KOG1423|consensus 99.3 8.1E-11 1.7E-15 113.2 13.9 159 18-211 70-267 (379)
243 COG0218 Predicted GTPase [Gene 99.3 2E-10 4.4E-15 104.6 15.9 148 18-211 22-193 (200)
244 COG0536 Obg Predicted GTPase [ 99.2 3.5E-11 7.5E-16 117.0 10.9 155 22-210 161-328 (369)
245 CHL00071 tufA elongation facto 99.2 4.7E-11 1E-15 119.3 12.0 138 17-200 9-178 (409)
246 COG2262 HflX GTPases [General 99.2 1.2E-10 2.6E-15 115.5 13.8 148 21-211 193-352 (411)
247 KOG0082|consensus 99.2 1.9E-11 4.1E-16 119.9 8.1 87 50-177 180-276 (354)
248 PRK05124 cysN sulfate adenylyl 99.2 1.4E-10 3.1E-15 118.1 14.5 148 12-204 19-214 (474)
249 TIGR00503 prfC peptide chain r 99.2 1.4E-10 3E-15 119.6 14.3 127 18-190 9-162 (527)
250 TIGR00484 EF-G translation elo 99.2 2E-10 4.3E-15 121.7 15.6 124 21-190 11-157 (689)
251 PRK05506 bifunctional sulfate 99.2 1.7E-10 3.7E-15 121.1 14.5 152 8-204 12-210 (632)
252 PLN03126 Elongation factor Tu; 99.2 2.5E-10 5.4E-15 116.5 14.9 138 17-200 78-247 (478)
253 smart00010 small_GTPase Small 99.2 9.8E-12 2.1E-16 100.8 3.7 112 21-202 1-113 (124)
254 PRK09602 translation-associate 99.2 3.7E-10 8E-15 112.8 15.2 73 21-93 2-107 (396)
255 KOG0090|consensus 99.2 1.1E-10 2.5E-15 107.1 10.2 125 14-180 32-162 (238)
256 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 9.6E-10 2.1E-14 98.4 15.9 159 21-211 1-180 (196)
257 PLN00043 elongation factor 1-a 99.2 1.9E-10 4.1E-15 116.5 12.7 141 17-203 4-201 (447)
258 KOG1191|consensus 99.2 4E-10 8.8E-15 113.7 13.4 154 17-211 265-446 (531)
259 TIGR02034 CysN sulfate adenyly 99.1 3.1E-10 6.7E-15 113.4 12.4 139 21-204 1-186 (406)
260 PRK00049 elongation factor Tu; 99.1 3.7E-10 8.1E-15 112.4 12.1 138 17-200 9-178 (396)
261 PLN03127 Elongation factor Tu; 99.1 5.3E-10 1.1E-14 113.3 12.7 137 17-199 58-226 (447)
262 COG1163 DRG Predicted GTPase [ 99.1 6.8E-10 1.5E-14 107.5 12.1 182 20-210 63-284 (365)
263 TIGR00490 aEF-2 translation el 99.1 1.2E-09 2.6E-14 116.5 13.6 113 19-177 18-152 (720)
264 PTZ00141 elongation factor 1- 99.0 2.9E-09 6.2E-14 107.9 14.2 142 17-203 4-201 (446)
265 PRK12739 elongation factor G; 99.0 3.4E-09 7.4E-14 112.5 13.5 126 19-190 7-155 (691)
266 TIGR00991 3a0901s02IAP34 GTP-b 99.0 7.6E-09 1.6E-13 100.4 14.6 61 18-78 36-99 (313)
267 PF00503 G-alpha: G-protein al 99.0 7.9E-10 1.7E-14 109.5 7.7 83 52-175 222-315 (389)
268 PRK12740 elongation factor G; 99.0 5.6E-09 1.2E-13 110.2 13.7 120 26-191 1-143 (668)
269 cd01853 Toc34_like Toc34-like 99.0 8.9E-09 1.9E-13 96.9 13.6 61 18-78 29-92 (249)
270 KOG1532|consensus 99.0 1.2E-09 2.6E-14 104.0 7.3 161 15-211 14-260 (366)
271 COG3596 Predicted GTPase [Gene 99.0 2.2E-09 4.8E-14 102.1 9.1 121 14-178 33-163 (296)
272 PRK13768 GTPase; Provisional 99.0 3.7E-09 7.9E-14 99.4 10.4 75 135-211 134-243 (253)
273 PRK00007 elongation factor G; 99.0 7.9E-09 1.7E-13 109.8 14.0 124 21-190 11-157 (693)
274 KOG0462|consensus 99.0 6.6E-09 1.4E-13 106.2 12.6 169 22-236 62-258 (650)
275 cd01882 BMS1 Bms1. Bms1 is an 99.0 2.2E-08 4.8E-13 92.3 15.2 154 18-221 37-207 (225)
276 PTZ00327 eukaryotic translatio 98.9 1.4E-08 3E-13 103.4 14.0 150 17-211 31-229 (460)
277 PRK09866 hypothetical protein; 98.9 4.3E-08 9.4E-13 102.7 16.5 104 66-213 231-351 (741)
278 COG0481 LepA Membrane GTPase L 98.9 1.4E-08 3E-13 102.6 12.0 169 22-236 11-209 (603)
279 PTZ00258 GTP-binding protein; 98.9 3.4E-08 7.5E-13 98.6 14.8 76 18-93 19-120 (390)
280 KOG3905|consensus 98.8 4.8E-08 1E-12 95.0 13.4 154 19-210 51-285 (473)
281 KOG0085|consensus 98.8 9.1E-10 2E-14 102.8 1.5 98 50-178 184-281 (359)
282 COG0532 InfB Translation initi 98.8 1.6E-08 3.5E-13 103.1 10.5 147 19-211 4-166 (509)
283 KOG1145|consensus 98.8 4.9E-08 1.1E-12 100.0 11.1 147 17-210 150-311 (683)
284 PRK09601 GTP-binding protein Y 98.7 3.3E-07 7.1E-12 90.8 15.9 73 21-93 3-101 (364)
285 PF04548 AIG1: AIG1 family; I 98.7 1.7E-07 3.7E-12 85.6 12.8 146 21-198 1-163 (212)
286 PF03029 ATP_bind_1: Conserved 98.7 1.5E-08 3.3E-13 94.7 5.4 50 162-211 155-233 (238)
287 TIGR00157 ribosome small subun 98.7 9.2E-08 2E-12 89.6 10.7 92 76-212 24-120 (245)
288 TIGR02836 spore_IV_A stage IV 98.7 4.2E-07 9.1E-12 91.4 15.4 161 18-199 15-219 (492)
289 PRK14845 translation initiatio 98.7 1.4E-07 3E-12 104.0 12.3 132 31-211 472-669 (1049)
290 PF05783 DLIC: Dynein light in 98.7 2.6E-07 5.7E-12 94.3 13.2 62 19-83 24-91 (472)
291 PF00735 Septin: Septin; Inte 98.6 4.3E-07 9.4E-12 87.0 12.4 140 20-185 4-164 (281)
292 TIGR00073 hypB hydrogenase acc 98.6 9.6E-08 2.1E-12 86.6 7.4 74 129-211 123-203 (207)
293 KOG3886|consensus 98.6 8.4E-08 1.8E-12 89.6 7.0 155 20-217 4-185 (295)
294 PF00350 Dynamin_N: Dynamin fa 98.6 3.6E-07 7.7E-12 78.7 10.5 23 23-45 1-23 (168)
295 COG5256 TEF1 Translation elong 98.6 2.9E-07 6.2E-12 91.8 10.8 144 17-205 4-201 (428)
296 PLN00116 translation elongatio 98.6 2.4E-07 5.2E-12 100.6 11.0 112 19-176 18-163 (843)
297 PTZ00416 elongation factor 2; 98.6 1E-07 2.2E-12 103.5 8.0 112 19-176 18-157 (836)
298 KOG1707|consensus 98.6 5.9E-07 1.3E-11 92.6 12.5 145 9-199 414-568 (625)
299 PRK07560 elongation factor EF- 98.5 8.6E-07 1.9E-11 95.0 13.8 113 19-177 19-153 (731)
300 PRK09435 membrane ATPase/prote 98.5 7.6E-07 1.7E-11 87.3 11.6 83 127-218 167-263 (332)
301 COG4917 EutP Ethanolamine util 98.5 3.2E-07 7E-12 78.5 7.3 132 22-211 3-142 (148)
302 KOG0099|consensus 98.5 1.8E-07 3.9E-12 88.8 5.4 77 60-177 197-283 (379)
303 COG0012 Predicted GTPase, prob 98.5 2.5E-06 5.4E-11 84.4 13.2 74 20-93 2-102 (372)
304 PF05049 IIGP: Interferon-indu 98.4 6.5E-07 1.4E-11 89.0 8.9 108 18-175 33-153 (376)
305 TIGR00750 lao LAO/AO transport 98.4 2.3E-06 5E-11 82.3 11.8 51 162-212 171-235 (300)
306 cd04178 Nucleostemin_like Nucl 98.4 9.9E-07 2.1E-11 78.6 8.2 56 18-74 115-171 (172)
307 COG1217 TypA Predicted membran 98.4 1.7E-06 3.6E-11 87.7 10.5 133 21-199 6-169 (603)
308 TIGR00101 ureG urease accessor 98.4 2.6E-06 5.7E-11 77.4 10.2 72 129-211 112-192 (199)
309 cd01858 NGP_1 NGP-1. Autoanti 98.3 2E-06 4.4E-11 74.2 8.6 55 19-74 101-156 (157)
310 smart00053 DYNc Dynamin, GTPas 98.3 1.4E-05 2.9E-10 75.2 14.1 26 19-44 25-50 (240)
311 cd01855 YqeH YqeH. YqeH is an 98.3 1.9E-06 4.1E-11 76.6 7.3 56 19-75 126-190 (190)
312 COG4108 PrfC Peptide chain rel 98.3 2.8E-06 6E-11 85.5 9.1 127 19-191 11-164 (528)
313 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.5E-06 3.3E-11 73.9 6.1 54 21-75 84-138 (141)
314 cd01900 YchF YchF subfamily. 98.3 3.7E-06 8E-11 80.5 9.4 71 23-93 1-97 (274)
315 TIGR00993 3a0901s04IAP86 chlor 98.3 8.8E-06 1.9E-10 85.9 12.5 59 20-78 118-179 (763)
316 cd01856 YlqF YlqF. Proteins o 98.2 5.4E-06 1.2E-10 72.8 8.3 57 18-75 113-170 (171)
317 cd01859 MJ1464 MJ1464. This f 98.2 5.4E-06 1.2E-10 71.2 7.8 55 18-74 99-155 (156)
318 COG0480 FusA Translation elong 98.2 1.5E-05 3.2E-10 85.1 12.5 125 19-189 9-157 (697)
319 PRK09563 rbgA GTPase YlqF; Rev 98.2 9.2E-06 2E-10 77.7 9.4 58 18-76 119-177 (287)
320 TIGR03596 GTPase_YlqF ribosome 98.1 7.7E-06 1.7E-10 77.7 8.4 57 18-75 116-173 (276)
321 PRK10463 hydrogenase nickel in 98.1 1.1E-05 2.5E-10 77.7 9.5 49 163-211 230-285 (290)
322 COG2895 CysN GTPases - Sulfate 98.1 2.3E-05 5E-10 77.3 10.9 140 17-202 3-190 (431)
323 cd01859 MJ1464 MJ1464. This f 98.1 7.6E-06 1.6E-10 70.3 6.5 72 135-211 18-92 (156)
324 KOG0705|consensus 98.1 6.5E-06 1.4E-10 84.7 6.8 146 18-210 28-184 (749)
325 COG5019 CDC3 Septin family pro 98.1 5.6E-05 1.2E-09 74.7 12.7 57 19-75 22-92 (373)
326 KOG1954|consensus 98.0 4.1E-05 9E-10 76.0 11.6 116 21-181 59-229 (532)
327 PRK12289 GTPase RsgA; Reviewed 98.0 1.7E-05 3.7E-10 78.4 8.7 75 135-213 95-173 (352)
328 KOG2655|consensus 98.0 5.7E-05 1.2E-09 74.8 12.1 57 20-76 21-90 (366)
329 KOG0468|consensus 98.0 3E-05 6.4E-10 81.4 10.2 112 19-176 127-262 (971)
330 COG3276 SelB Selenocysteine-sp 98.0 2.5E-05 5.5E-10 78.6 8.8 147 22-214 2-161 (447)
331 cd01849 YlqF_related_GTPase Yl 98.0 2.9E-05 6.2E-10 67.0 7.8 56 17-75 97-155 (155)
332 PRK00098 GTPase RsgA; Reviewed 97.9 2.4E-05 5.2E-10 75.3 7.4 78 131-212 82-164 (298)
333 KOG0461|consensus 97.9 0.00017 3.6E-09 71.3 12.9 146 18-210 5-188 (522)
334 KOG0458|consensus 97.9 4E-05 8.7E-10 79.3 8.6 143 17-203 174-370 (603)
335 cd01855 YqeH YqeH. YqeH is an 97.9 3E-05 6.5E-10 68.9 6.6 86 78-211 24-121 (190)
336 COG1161 Predicted GTPases [Gen 97.9 4.2E-05 9.1E-10 74.6 7.8 58 18-76 130-188 (322)
337 KOG1486|consensus 97.9 0.00022 4.8E-09 67.9 12.3 58 20-77 62-121 (364)
338 KOG0410|consensus 97.8 1.9E-05 4.2E-10 77.1 4.7 144 20-211 178-337 (410)
339 cd01854 YjeQ_engC YjeQ/EngC. 97.8 8.3E-05 1.8E-09 71.2 8.8 77 132-212 81-161 (287)
340 COG0378 HypB Ni2+-binding GTPa 97.8 0.00016 3.4E-09 66.2 9.9 46 166-211 145-197 (202)
341 PF06858 NOG1: Nucleolar GTP-b 97.8 4.3E-05 9.4E-10 56.8 5.1 51 122-174 6-58 (58)
342 PRK12288 GTPase RsgA; Reviewed 97.8 9.3E-05 2E-09 73.0 8.4 53 23-78 208-270 (347)
343 cd01851 GBP Guanylate-binding 97.7 0.00042 9.1E-09 64.1 12.0 58 21-78 8-73 (224)
344 TIGR03597 GTPase_YqeH ribosome 97.7 0.0001 2.2E-09 72.9 7.8 58 20-78 154-217 (360)
345 KOG1547|consensus 97.7 0.0005 1.1E-08 65.1 11.5 71 5-75 29-114 (336)
346 PF03193 DUF258: Protein of un 97.7 4.3E-05 9.4E-10 67.8 4.3 55 21-78 36-100 (161)
347 PRK13796 GTPase YqeH; Provisio 97.7 0.00012 2.6E-09 72.6 7.8 55 20-77 160-222 (365)
348 PF03308 ArgK: ArgK protein; 97.7 4.1E-05 8.9E-10 72.8 4.3 89 122-219 135-234 (266)
349 TIGR00092 GTP-binding protein 97.6 0.00024 5.2E-09 70.8 9.2 73 21-93 3-102 (368)
350 COG5257 GCD11 Translation init 97.6 0.0002 4.4E-09 70.1 7.9 151 18-214 8-201 (415)
351 cd01857 HSR1_MMR1 HSR1/MMR1. 97.6 0.00026 5.7E-09 60.1 7.7 63 135-202 17-84 (141)
352 KOG3887|consensus 97.6 0.00029 6.4E-09 66.7 8.6 148 21-211 28-199 (347)
353 cd01858 NGP_1 NGP-1. Autoanti 97.6 0.00032 7E-09 60.5 8.0 74 135-211 14-91 (157)
354 TIGR00157 ribosome small subun 97.5 0.00015 3.2E-09 68.0 6.2 54 21-78 121-184 (245)
355 TIGR03597 GTPase_YqeH ribosome 97.5 0.00015 3.2E-09 71.7 6.0 89 75-211 50-149 (360)
356 COG0050 TufB GTPases - transla 97.5 0.0007 1.5E-08 65.8 10.3 136 17-199 9-177 (394)
357 cd01849 YlqF_related_GTPase Yl 97.5 0.00033 7.1E-09 60.4 7.4 76 131-211 1-81 (155)
358 KOG1491|consensus 97.5 0.00036 7.7E-09 68.7 8.1 76 18-93 18-119 (391)
359 KOG2486|consensus 97.5 0.00025 5.5E-09 68.1 6.9 115 18-178 134-263 (320)
360 PRK12289 GTPase RsgA; Reviewed 97.5 0.0002 4.3E-09 70.9 6.1 54 22-78 174-237 (352)
361 COG1703 ArgK Putative periplas 97.4 0.00072 1.6E-08 65.6 9.5 88 125-221 160-260 (323)
362 cd03112 CobW_like The function 97.4 0.00054 1.2E-08 59.8 8.0 21 23-43 3-23 (158)
363 PRK12288 GTPase RsgA; Reviewed 97.4 0.001 2.2E-08 65.7 10.6 79 130-212 121-205 (347)
364 KOG0448|consensus 97.3 0.0033 7.2E-08 66.6 13.6 45 10-54 99-144 (749)
365 PRK10416 signal recognition pa 97.3 0.0011 2.4E-08 64.7 9.0 57 135-198 238-295 (318)
366 KOG1144|consensus 97.3 0.00027 5.8E-09 75.2 4.9 229 21-321 476-771 (1064)
367 PF02492 cobW: CobW/HypB/UreG, 97.3 0.0013 2.7E-08 58.4 8.6 47 127-179 111-157 (178)
368 TIGR03348 VI_IcmF type VI secr 97.3 0.00078 1.7E-08 76.0 8.9 109 23-177 114-257 (1169)
369 COG1162 Predicted GTPases [Gen 97.3 0.00054 1.2E-08 66.4 6.3 54 22-78 166-229 (301)
370 cd03110 Fer4_NifH_child This p 97.2 0.012 2.7E-07 51.4 14.0 55 135-194 120-176 (179)
371 COG5258 GTPBP1 GTPase [General 97.2 0.002 4.4E-08 64.5 9.9 29 18-46 115-143 (527)
372 cd01854 YjeQ_engC YjeQ/EngC. 97.2 0.00081 1.8E-08 64.4 6.9 55 21-78 162-226 (287)
373 PRK14722 flhF flagellar biosyn 97.1 0.0046 9.9E-08 61.9 11.5 63 135-197 251-316 (374)
374 TIGR01425 SRP54_euk signal rec 97.1 0.0059 1.3E-07 62.1 12.4 22 20-41 100-121 (429)
375 TIGR00064 ftsY signal recognit 97.1 0.002 4.3E-08 61.5 8.5 56 135-197 196-252 (272)
376 cd01856 YlqF YlqF. Proteins o 97.1 0.0016 3.5E-08 57.1 7.3 70 135-211 25-97 (171)
377 cd03115 SRP The signal recogni 97.1 0.0016 3.4E-08 56.9 7.1 54 134-194 117-171 (173)
378 PRK00098 GTPase RsgA; Reviewed 97.1 0.0011 2.3E-08 63.9 6.6 54 21-77 165-228 (298)
379 PRK13695 putative NTPase; Prov 97.1 0.0063 1.4E-07 53.4 10.8 22 21-42 1-22 (174)
380 PF00448 SRP54: SRP54-type pro 97.1 0.0041 8.8E-08 56.6 9.7 55 135-197 119-175 (196)
381 PRK14974 cell division protein 97.0 0.0022 4.7E-08 63.3 8.1 31 166-196 282-313 (336)
382 COG5192 BMS1 GTP-binding prote 97.0 0.0028 6E-08 66.2 8.8 130 20-199 69-210 (1077)
383 PRK11537 putative GTP-binding 97.0 0.006 1.3E-07 59.6 10.8 21 23-43 7-27 (318)
384 COG0523 Putative GTPases (G3E 97.0 0.014 3E-07 57.4 13.2 67 130-202 117-189 (323)
385 TIGR03596 GTPase_YlqF ribosome 96.9 0.0038 8.2E-08 59.3 8.7 69 135-210 27-98 (276)
386 KOG0467|consensus 96.8 0.0017 3.7E-08 69.4 5.9 73 21-93 10-100 (887)
387 COG1618 Predicted nucleotide k 96.8 0.024 5.2E-07 50.9 12.2 25 18-42 3-27 (179)
388 COG3640 CooC CO dehydrogenase 96.8 0.0093 2E-07 56.3 10.0 71 129-205 155-226 (255)
389 cd03114 ArgK-like The function 96.8 0.0073 1.6E-07 52.4 8.7 20 23-42 2-21 (148)
390 PRK12727 flagellar biosynthesi 96.8 0.0091 2E-07 62.3 10.6 56 135-197 463-519 (559)
391 PRK09563 rbgA GTPase YlqF; Rev 96.7 0.0059 1.3E-07 58.4 8.2 69 135-210 30-101 (287)
392 PF09547 Spore_IV_A: Stage IV 96.7 0.049 1.1E-06 55.5 14.5 39 161-199 178-219 (492)
393 KOG0464|consensus 96.7 0.0015 3.2E-08 66.1 3.6 125 21-191 38-185 (753)
394 KOG0447|consensus 96.6 0.015 3.3E-07 60.6 10.8 23 21-43 309-331 (980)
395 KOG3859|consensus 96.6 0.0072 1.6E-07 58.5 7.5 56 20-75 42-105 (406)
396 PRK14721 flhF flagellar biosyn 96.6 0.0095 2.1E-07 60.5 8.8 24 19-42 190-213 (420)
397 PF13207 AAA_17: AAA domain; P 96.4 0.0027 5.8E-08 51.7 3.1 22 22-43 1-22 (121)
398 PRK13796 GTPase YqeH; Provisio 96.4 0.01 2.3E-07 58.8 7.8 72 132-210 72-154 (365)
399 TIGR02475 CobW cobalamin biosy 96.4 0.033 7.1E-07 54.9 11.2 21 23-43 7-27 (341)
400 COG1419 FlhF Flagellar GTP-bin 96.4 0.036 7.9E-07 55.9 11.4 129 20-195 203-371 (407)
401 PRK11889 flhF flagellar biosyn 96.4 0.045 9.7E-07 55.6 12.0 24 19-42 240-263 (436)
402 cd00009 AAA The AAA+ (ATPases 96.3 0.019 4.1E-07 46.2 7.8 26 19-44 18-43 (151)
403 cd02038 FleN-like FleN is a me 96.3 0.068 1.5E-06 45.4 11.3 107 24-177 4-111 (139)
404 TIGR00959 ffh signal recogniti 96.2 0.015 3.3E-07 59.1 8.0 56 135-197 218-274 (428)
405 PRK06731 flhF flagellar biosyn 96.2 0.028 6.1E-07 53.8 9.2 24 19-42 74-97 (270)
406 PF13671 AAA_33: AAA domain; P 96.1 0.0043 9.3E-08 51.8 3.0 20 23-42 2-21 (143)
407 PRK12726 flagellar biosynthesi 96.1 0.062 1.4E-06 54.2 11.6 23 20-42 206-228 (407)
408 PRK10867 signal recognition pa 96.1 0.089 1.9E-06 53.7 12.9 56 135-197 219-275 (433)
409 cd01983 Fer4_NifH The Fer4_Nif 96.1 0.039 8.6E-07 41.8 8.1 61 23-93 2-63 (99)
410 PRK08118 topology modulation p 96.1 0.0049 1.1E-07 54.4 3.1 23 21-43 2-24 (167)
411 PRK05703 flhF flagellar biosyn 96.0 0.072 1.6E-06 54.1 11.9 31 167-197 361-392 (424)
412 PRK00771 signal recognition pa 96.0 0.03 6.5E-07 57.2 9.0 23 19-41 94-116 (437)
413 KOG2485|consensus 96.0 0.0073 1.6E-07 59.0 4.3 58 18-75 141-206 (335)
414 COG0563 Adk Adenylate kinase a 96.0 0.0051 1.1E-07 55.2 3.0 23 21-43 1-23 (178)
415 PRK12724 flagellar biosynthesi 96.0 0.025 5.4E-07 57.6 8.2 23 20-42 223-245 (432)
416 PRK07261 topology modulation p 96.0 0.0056 1.2E-07 54.1 3.1 23 21-43 1-23 (171)
417 KOG2484|consensus 95.9 0.0066 1.4E-07 61.0 3.5 59 17-76 249-308 (435)
418 PRK06995 flhF flagellar biosyn 95.9 0.038 8.2E-07 57.1 9.0 22 21-42 257-278 (484)
419 cd02117 NifH_like This family 95.8 0.21 4.5E-06 45.2 12.7 65 129-194 141-207 (212)
420 smart00382 AAA ATPases associa 95.8 0.0087 1.9E-07 47.5 3.3 26 21-46 3-28 (148)
421 PRK14723 flhF flagellar biosyn 95.8 0.044 9.5E-07 59.5 9.5 22 21-42 186-207 (767)
422 cd02032 Bchl_like This family 95.8 0.16 3.4E-06 47.5 12.1 66 127-195 136-202 (267)
423 cd02036 MinD Bacterial cell di 95.7 0.36 7.7E-06 41.5 13.4 81 66-193 64-147 (179)
424 PRK01889 GTPase RsgA; Reviewed 95.7 0.043 9.3E-07 54.4 8.5 82 127-212 110-194 (356)
425 PF05621 TniB: Bacterial TniB 95.7 0.05 1.1E-06 53.0 8.7 26 20-45 61-86 (302)
426 KOG1424|consensus 95.7 0.016 3.5E-07 59.8 5.6 56 20-76 314-370 (562)
427 KOG0463|consensus 95.7 0.022 4.8E-07 57.2 6.2 66 137-205 283-348 (641)
428 PF13191 AAA_16: AAA ATPase do 95.7 0.011 2.5E-07 50.9 3.7 38 5-42 9-46 (185)
429 KOG0460|consensus 95.6 0.11 2.3E-06 51.8 10.6 136 18-199 52-219 (449)
430 PF00004 AAA: ATPase family as 95.6 0.0096 2.1E-07 48.4 2.9 21 23-43 1-21 (132)
431 PF13521 AAA_28: AAA domain; P 95.6 0.007 1.5E-07 52.4 2.2 22 22-43 1-22 (163)
432 KOG0465|consensus 95.6 0.022 4.9E-07 59.9 6.0 121 22-189 41-185 (721)
433 COG3523 IcmF Type VI protein s 95.6 0.026 5.7E-07 63.6 7.0 27 151-178 245-271 (1188)
434 PRK12723 flagellar biosynthesi 95.6 0.27 5.9E-06 49.5 13.5 56 135-197 291-347 (388)
435 COG0552 FtsY Signal recognitio 95.5 0.022 4.7E-07 56.1 5.4 142 18-196 137-318 (340)
436 KOG2423|consensus 95.5 0.015 3.3E-07 58.7 4.3 72 5-77 291-364 (572)
437 PF00005 ABC_tran: ABC transpo 95.5 0.012 2.6E-07 48.9 3.1 25 20-44 11-35 (137)
438 PRK06217 hypothetical protein; 95.4 0.013 2.7E-07 52.1 3.2 23 21-43 2-24 (183)
439 PRK03839 putative kinase; Prov 95.4 0.012 2.6E-07 51.7 3.0 23 21-43 1-23 (180)
440 PRK01889 GTPase RsgA; Reviewed 95.4 0.02 4.3E-07 56.7 4.9 24 21-44 196-219 (356)
441 PF13238 AAA_18: AAA domain; P 95.4 0.012 2.7E-07 47.6 2.9 21 23-43 1-21 (129)
442 COG1162 Predicted GTPases [Gen 95.4 0.077 1.7E-06 51.7 8.7 77 135-214 85-166 (301)
443 cd01129 PulE-GspE PulE/GspE Th 95.3 0.072 1.5E-06 50.6 8.2 34 11-44 71-104 (264)
444 TIGR02322 phosphon_PhnN phosph 95.3 0.014 2.9E-07 51.2 2.9 22 22-43 3-24 (179)
445 cd02042 ParA ParA and ParB of 95.2 0.094 2E-06 41.6 7.4 64 23-93 2-66 (104)
446 cd02019 NK Nucleoside/nucleoti 95.2 0.017 3.8E-07 43.5 2.9 21 23-43 2-22 (69)
447 PF03266 NTPase_1: NTPase; In 95.2 0.016 3.4E-07 51.5 3.1 60 134-199 98-159 (168)
448 PRK10078 ribose 1,5-bisphospho 95.2 0.017 3.8E-07 51.3 3.3 22 22-43 4-25 (186)
449 PF13555 AAA_29: P-loop contai 95.1 0.02 4.4E-07 43.1 3.0 21 22-42 25-45 (62)
450 PRK14532 adenylate kinase; Pro 95.1 0.017 3.7E-07 51.0 3.1 23 21-43 1-23 (188)
451 PRK08233 hypothetical protein; 95.1 0.022 4.7E-07 49.4 3.6 24 20-43 3-26 (182)
452 PRK05480 uridine/cytidine kina 95.1 0.021 4.7E-07 51.4 3.7 26 18-43 4-29 (209)
453 TIGR01281 DPOR_bchL light-inde 95.1 0.38 8.2E-06 44.9 12.1 65 128-195 137-202 (268)
454 TIGR03263 guanyl_kin guanylate 95.1 0.019 4E-07 50.2 3.1 23 22-44 3-25 (180)
455 TIGR01360 aden_kin_iso1 adenyl 95.0 0.019 4.1E-07 50.1 3.0 21 22-42 5-25 (188)
456 cd03111 CpaE_like This protein 95.0 0.21 4.5E-06 40.6 8.9 101 26-172 6-106 (106)
457 COG0541 Ffh Signal recognition 95.0 0.025 5.5E-07 57.5 4.1 24 18-41 98-121 (451)
458 PRK14530 adenylate kinase; Pro 95.0 0.02 4.3E-07 52.1 3.1 22 21-42 4-25 (215)
459 cd01130 VirB11-like_ATPase Typ 95.0 0.033 7.2E-07 49.6 4.5 34 9-43 15-48 (186)
460 cd00071 GMPK Guanosine monopho 95.0 0.021 4.5E-07 48.7 3.0 21 23-43 2-22 (137)
461 cd04178 Nucleostemin_like Nucl 94.9 0.046 1E-06 48.6 5.3 55 131-188 1-55 (172)
462 PF07728 AAA_5: AAA domain (dy 94.9 0.024 5.1E-07 47.5 3.2 21 22-42 1-21 (139)
463 TIGR00235 udk uridine kinase. 94.8 0.027 5.9E-07 50.8 3.5 26 18-43 4-29 (207)
464 PRK13851 type IV secretion sys 94.8 0.11 2.3E-06 51.5 7.9 27 18-44 160-186 (344)
465 KOG1143|consensus 94.8 0.057 1.2E-06 54.3 5.9 25 20-44 167-191 (591)
466 COG1126 GlnQ ABC-type polar am 94.8 0.022 4.8E-07 53.3 2.9 24 21-44 29-52 (240)
467 cd02023 UMPK Uridine monophosp 94.7 0.024 5.3E-07 50.5 2.9 21 23-43 2-22 (198)
468 PRK06696 uridine kinase; Valid 94.7 0.056 1.2E-06 49.5 5.4 39 4-42 6-44 (223)
469 PTZ00088 adenylate kinase 1; P 94.7 0.028 6.1E-07 52.5 3.3 26 18-43 4-29 (229)
470 PRK02496 adk adenylate kinase; 94.7 0.029 6.3E-07 49.5 3.2 23 21-43 2-24 (184)
471 COG1116 TauB ABC-type nitrate/ 94.7 0.026 5.6E-07 53.5 3.0 21 22-42 31-51 (248)
472 PRK13949 shikimate kinase; Pro 94.6 0.029 6.2E-07 49.6 3.1 22 22-43 3-24 (169)
473 TIGR01359 UMP_CMP_kin_fam UMP- 94.6 0.027 5.8E-07 49.3 2.9 21 23-43 2-22 (183)
474 cd01428 ADK Adenylate kinase ( 94.6 0.024 5.3E-07 49.8 2.6 22 22-43 1-22 (194)
475 TIGR03015 pepcterm_ATPase puta 94.6 0.046 1E-06 50.6 4.5 36 8-43 31-66 (269)
476 PRK09270 nucleoside triphospha 94.6 0.058 1.3E-06 49.6 5.1 26 18-43 31-56 (229)
477 PF05729 NACHT: NACHT domain 94.5 0.03 6.6E-07 47.1 2.9 21 23-43 3-23 (166)
478 PHA00729 NTP-binding motif con 94.5 0.062 1.3E-06 50.3 5.2 39 2-43 2-40 (226)
479 PRK13900 type IV secretion sys 94.5 0.14 3.1E-06 50.3 8.0 35 10-45 151-185 (332)
480 PRK00625 shikimate kinase; Pro 94.5 0.032 6.9E-07 49.8 3.1 23 21-43 1-23 (173)
481 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.5 0.034 7.4E-07 50.2 3.3 24 21-44 31-54 (218)
482 KOG1487|consensus 94.4 0.084 1.8E-06 50.9 5.9 56 21-76 60-117 (358)
483 cd03264 ABC_drug_resistance_li 94.4 0.034 7.5E-07 50.0 3.2 24 19-43 25-48 (211)
484 PRK14738 gmk guanylate kinase; 94.4 0.039 8.5E-07 50.1 3.6 25 19-43 12-36 (206)
485 PF03205 MobB: Molybdopterin g 94.4 0.031 6.8E-07 48.1 2.8 22 22-43 2-23 (140)
486 PF04665 Pox_A32: Poxvirus A32 94.4 0.036 7.8E-07 52.4 3.4 26 18-43 11-36 (241)
487 PRK14531 adenylate kinase; Pro 94.4 0.035 7.7E-07 49.2 3.2 23 21-43 3-25 (183)
488 PRK14737 gmk guanylate kinase; 94.4 0.034 7.3E-07 50.1 3.1 25 20-44 4-28 (186)
489 PRK04195 replication factor C 94.4 0.16 3.5E-06 52.1 8.3 39 6-44 24-63 (482)
490 COG1136 SalX ABC-type antimicr 94.4 0.032 6.9E-07 52.3 2.9 23 22-44 33-55 (226)
491 PRK00300 gmk guanylate kinase; 94.3 0.04 8.6E-07 49.2 3.4 25 19-43 4-28 (205)
492 PF13401 AAA_22: AAA domain; P 94.3 0.034 7.5E-07 45.4 2.7 26 19-44 3-28 (131)
493 smart00763 AAA_PrkA PrkA AAA d 94.3 0.063 1.4E-06 53.6 5.0 38 5-42 60-100 (361)
494 TIGR01313 therm_gnt_kin carboh 94.3 0.03 6.6E-07 48.2 2.4 21 23-43 1-21 (163)
495 TIGR00960 3a0501s02 Type II (G 94.2 0.04 8.6E-07 49.7 3.3 24 21-44 30-53 (216)
496 cd03225 ABC_cobalt_CbiO_domain 94.2 0.042 9E-07 49.3 3.3 24 21-44 28-51 (211)
497 TIGR01166 cbiO cobalt transpor 94.2 0.039 8.4E-07 48.9 3.0 23 22-44 20-42 (190)
498 COG0194 Gmk Guanylate kinase [ 94.2 0.047 1E-06 49.8 3.5 26 19-44 3-28 (191)
499 TIGR03608 L_ocin_972_ABC putat 94.2 0.043 9.4E-07 49.0 3.3 24 21-44 25-48 (206)
500 cd03292 ABC_FtsE_transporter F 94.2 0.043 9.4E-07 49.3 3.3 23 21-43 28-50 (214)
No 1
>KOG0084|consensus
Probab=99.98 E-value=4.9e-32 Score=243.38 Aligned_cols=151 Identities=23% Similarity=0.439 Sum_probs=136.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+|+|++|||||+|+.||.++.|.+.|..|+|++++. ++++.++++||||+|||+|+.+..+||++|+++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 346899999999999999999999999999999999999874 6889999999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||+++++||.++..|+.++.+.. ..++|.++||||+
T Consensus 87 -----------------------------------------~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~ 124 (205)
T KOG0084|consen 87 -----------------------------------------FVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKC 124 (205)
T ss_pred -----------------------------------------EEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeecc
Confidence 9999999999999999999996653 4679999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCc-EEEEeccc-hHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMID-FWITLTLL-IRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~-~~etSAk~-~~~~~~~l~~i 210 (329)
|+.+. +++++++.+++++ |+|||||. .++.+.|+...
T Consensus 125 Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la 168 (205)
T KOG0084|consen 125 DLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLA 168 (205)
T ss_pred ccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHH
Confidence 99875 6789999999999 99999999 55555555433
No 2
>KOG0092|consensus
Probab=99.96 E-value=9.5e-30 Score=227.88 Aligned_cols=152 Identities=24% Similarity=0.416 Sum_probs=137.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
..++||+|+|+.|||||||+-|+..++|.+...||+|..+.. ++...+++.||||+|||+|+++.++|+|+|++.|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 457999999999999999999999999998789999987764 4566799999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||+++.+||..++.|+.++.+... +++-|.|||||+
T Consensus 83 -----------------------------------------vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~ 120 (200)
T KOG0092|consen 83 -----------------------------------------VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKA 120 (200)
T ss_pred -----------------------------------------EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchh
Confidence 99999999999999999999988755 778888999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
||.+. .+++.++++.+..|+|||||+..+.+++++.+.
T Consensus 121 DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia 163 (200)
T KOG0092|consen 121 DLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIA 163 (200)
T ss_pred hhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHH
Confidence 99874 679999999999999999999777777776664
No 3
>KOG0078|consensus
Probab=99.96 E-value=3e-29 Score=227.35 Aligned_cols=153 Identities=25% Similarity=0.417 Sum_probs=139.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
...-+||+++|++|||||+|+.+|..+.|...+..|+|++++. +++..+.+++|||+||++|+.+...|+++|+++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 3456899999999999999999999999999999999999874 578889999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||+++..||+++..|++.+-+.. ..++|++|||||
T Consensus 89 ~-----------------------------------------LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK 126 (207)
T KOG0078|consen 89 L-----------------------------------------LVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNK 126 (207)
T ss_pred E-----------------------------------------EEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeecc
Confidence 9 9999999999999999999887654 458999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccc-hHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLL-IRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~-~~~~~~~l~~i~ 211 (329)
+|+..+ +.++.+|.++|+.|+|||||+ .|+.+.|++..+
T Consensus 127 ~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~ 171 (207)
T KOG0078|consen 127 CDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLAR 171 (207)
T ss_pred ccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHH
Confidence 999874 678999999999999999999 777777776655
No 4
>KOG0094|consensus
Probab=99.96 E-value=3.6e-29 Score=224.90 Aligned_cols=153 Identities=21% Similarity=0.375 Sum_probs=140.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.+.+||+++|+.+|||||||+||..+.|...|.+|||+++.. +.+..+++++|||+|||+|+.+.+.|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 356999999999999999999999999999999999999874 5688899999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++|..||+....|+..+.......++-|+|||||.
T Consensus 100 -----------------------------------------iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKt 138 (221)
T KOG0094|consen 100 -----------------------------------------IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKT 138 (221)
T ss_pred -----------------------------------------EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccc
Confidence 999999999999999999999988776678899999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
||.+. .|++..+++++..|+||||+.+.+.++++..+.
T Consensus 139 DL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIa 181 (221)
T KOG0094|consen 139 DLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIA 181 (221)
T ss_pred cccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHH
Confidence 99886 568889999999999999999777777776654
No 5
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=2.6e-28 Score=216.23 Aligned_cols=165 Identities=32% Similarity=0.626 Sum_probs=142.8
Q ss_pred ChHHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
|+.++..+ +++.+.++++||+++|++|||||||++++..+.+. .+.||+|.++..++.+++.+++||+||+++++.
T Consensus 1 m~~~~~~~---~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~ 76 (181)
T PLN00223 1 MGLSFTKL---FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (181)
T ss_pred CchHHHHH---HHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEEEECCEEEEEEECCCCHHHHH
Confidence 66565443 46666788899999999999999999999988876 578999998888888889999999999999999
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
+|..+++++|++| +|||++++++++++..++.++++...
T Consensus 77 ~~~~~~~~a~~iI-----------------------------------------~V~D~s~~~s~~~~~~~l~~~l~~~~ 115 (181)
T PLN00223 77 LWRHYFQNTQGLI-----------------------------------------FVVDSNDRDRVVEARDELHRMLNEDE 115 (181)
T ss_pred HHHHHhccCCEEE-----------------------------------------EEEeCCcHHHHHHHHHHHHHHhcCHh
Confidence 9999999999999 99999999999999999988877655
Q ss_pred CCCCcEEEEEEcCCCCChhhHHHHHHHhCCc--------EEEEeccchHHHHHHhhhh
Q psy2970 161 LIGIPILVLGNKRDLPNALDEKELIDRIMID--------FWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~~~--------~~etSAk~~~~~~~~l~~i 210 (329)
..++|++||+||+|++++.+.+++++.++++ ++++||++++++++.++.+
T Consensus 116 ~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 173 (181)
T PLN00223 116 LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
T ss_pred hCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHH
Confidence 5789999999999999887888888888764 5689999987877777655
No 6
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.96 E-value=5.1e-28 Score=215.65 Aligned_cols=149 Identities=19% Similarity=0.308 Sum_probs=129.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
+.++||+++|++|||||||++++..+.|...+.||++..+.. ++++.+.+++|||+|+++|..++..+++++|+++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i- 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL- 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE-
Confidence 457899999999999999999999999998999999977653 5677899999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||+++++||+++ ..|+.++.+. .+++|++|||||+
T Consensus 82 ----------------------------------------lvyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~ 119 (182)
T cd04172 82 ----------------------------------------ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 119 (182)
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeECh
Confidence 99999999999997 6888887664 3579999999999
Q ss_pred CCCC-----------------hhhHHHHHHHhCC-cEEEEeccchHH-HHHHhhh
Q psy2970 174 DLPN-----------------ALDEKELIDRIMI-DFWITLTLLIRW-CESFLHH 209 (329)
Q Consensus 174 Dl~~-----------------~~e~~~l~~~~~~-~~~etSAk~~~~-~~~~l~~ 209 (329)
|+.+ ..+++++++++++ +|+||||+++.+ .++.++.
T Consensus 120 DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~ 174 (182)
T cd04172 120 DLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 174 (182)
T ss_pred hhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHH
Confidence 9853 1568999999995 899999999654 5555443
No 7
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.95 E-value=1.1e-27 Score=213.60 Aligned_cols=149 Identities=21% Similarity=0.327 Sum_probs=128.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+.+||+++|++|||||||++++..+.|...+.||++..+. .++++.+.+++|||+|+++|+.+++.+++++|+++
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i-- 79 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI-- 79 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE--
Confidence 3589999999999999999999999998889999998775 35777899999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||+++++||+++.. |..++.+. ..++|++|||||.|
T Consensus 80 ---------------------------------------lvydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~D 118 (191)
T cd01875 80 ---------------------------------------ICFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKD 118 (191)
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChh
Confidence 9999999999999974 76666543 35799999999999
Q ss_pred CCCh-----------------hhHHHHHHHhC-CcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----------------LDEKELIDRIM-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----------------~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. .++++++++++ .+|+||||+++.+.++.+..+
T Consensus 119 L~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l 172 (191)
T cd01875 119 LRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEA 172 (191)
T ss_pred hhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHH
Confidence 9643 35677888888 589999999977777766554
No 8
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=1e-27 Score=212.32 Aligned_cols=147 Identities=18% Similarity=0.288 Sum_probs=127.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++||+++|++|||||||++++.++.|...+.||++..+.. ++++.+.+++|||+|++++..+++.+++++|+++
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~i--- 77 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVL--- 77 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEE---
Confidence 4799999999999999999999999998999999877652 5677899999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||+++++||+++ ..|+.++.+. .+++|++|||||+|+
T Consensus 78 --------------------------------------lvfdit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL 117 (178)
T cd04131 78 --------------------------------------ICFDISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDL 117 (178)
T ss_pred --------------------------------------EEEECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhh
Confidence 99999999999996 6888887664 357999999999998
Q ss_pred CC-----------------hhhHHHHHHHhCC-cEEEEeccchHH-HHHHhhh
Q psy2970 176 PN-----------------ALDEKELIDRIMI-DFWITLTLLIRW-CESFLHH 209 (329)
Q Consensus 176 ~~-----------------~~e~~~l~~~~~~-~~~etSAk~~~~-~~~~l~~ 209 (329)
.+ ..+++++++++++ +|+||||+++.. .++++..
T Consensus 118 ~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~ 170 (178)
T cd04131 118 RTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHV 170 (178)
T ss_pred hcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHH
Confidence 53 2578899999997 799999999652 5554433
No 9
>KOG0080|consensus
Probab=99.95 E-value=2.8e-28 Score=213.64 Aligned_cols=142 Identities=20% Similarity=0.303 Sum_probs=129.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+||+++|++|||||||+.+|+.+.|.+....|+|++++ .++++.+++.||||+|||+|+.+.+.|+++|.++|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI-- 88 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII-- 88 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE--
Confidence 489999999999999999999999999887888999886 37899999999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++.+++|.++..|+.++-.....+++-.++||||+|.
T Consensus 89 ---------------------------------------lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDk 129 (209)
T KOG0080|consen 89 ---------------------------------------LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDK 129 (209)
T ss_pred ---------------------------------------EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccc
Confidence 99999999999999999999866656678888999999998
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHH
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRW 202 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~ 202 (329)
.++ +|+..+++++++.|+|+|||+...
T Consensus 130 es~R~V~reEG~kfAr~h~~LFiE~SAkt~~~ 161 (209)
T KOG0080|consen 130 ESERVVDREEGLKFARKHRCLFIECSAKTREN 161 (209)
T ss_pred hhcccccHHHHHHHHHhhCcEEEEcchhhhcc
Confidence 743 678899999999999999999333
No 10
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.95 E-value=1.1e-27 Score=212.47 Aligned_cols=148 Identities=22% Similarity=0.309 Sum_probs=129.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||+.++..+.|...+.||++..+.. ++++.+++.||||+|+++++.++..+++++++++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~i---- 77 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFV---- 77 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEE----
Confidence 689999999999999999999999998899999977653 4667799999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||+++++||+++ ..|+.++.+.. .++|++|||||+|+.
T Consensus 78 -------------------------------------lvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~ 118 (176)
T cd04133 78 -------------------------------------LAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLR 118 (176)
T ss_pred -------------------------------------EEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhc
Confidence 99999999999998 67988886542 579999999999994
Q ss_pred C---------------hhhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 177 N---------------ALDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~---------------~~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+ ..+++++++++++ +|+||||+++.+.++++..+.
T Consensus 119 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~ 169 (176)
T cd04133 119 DDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAI 169 (176)
T ss_pred cChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHH
Confidence 3 2467889999998 599999999777777776553
No 11
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.95 E-value=1.9e-27 Score=202.28 Aligned_cols=151 Identities=17% Similarity=0.291 Sum_probs=130.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++||+++|++|||||||++++..+.+...+.||++..+.+ +++..+.+++|||||++++..++..+++++++++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i--- 77 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFV--- 77 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEE---
Confidence 4799999999999999999999999988888998755443 4566788999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+.++.+.....++|+++|+||+|+.
T Consensus 78 --------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 78 --------------------------------------LVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999999999999999999988775445689999999999996
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .+..+++++++.+++++||+++.+.+++++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 120 DERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred ccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 53 346678888899999999999777777776553
No 12
>KOG0098|consensus
Probab=99.95 E-value=6.7e-28 Score=215.37 Aligned_cols=151 Identities=19% Similarity=0.275 Sum_probs=136.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.-.+|++++|+.|||||+|+.||++..|.+.+..|+|+++. .+++++++++||||+|||.|++....||++|.+.+
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 34689999999999999999999999999999999998874 47899999999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||+++++||..+..|+.++.+.. ..+..|+|+|||+
T Consensus 84 -----------------------------------------LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKs 121 (216)
T KOG0098|consen 84 -----------------------------------------LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKS 121 (216)
T ss_pred -----------------------------------------EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchh
Confidence 9999999999999999999998864 4789999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
||... +|++++|++.++.|+||||++..+.|+.+..+
T Consensus 122 DL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nt 163 (216)
T KOG0098|consen 122 DLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINT 163 (216)
T ss_pred hhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHH
Confidence 99764 78999999999999999999955555555443
No 13
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.95 E-value=1.7e-27 Score=213.72 Aligned_cols=151 Identities=19% Similarity=0.338 Sum_probs=133.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||++++..+.+...+.||++.++.. +++..+.+++|||+|++++..++..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 456999999999999999999999999988888888877642 4566789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+++..|+.++.+. .+++|++|||||+
T Consensus 84 -----------------------------------------lVfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~ 120 (189)
T cd04121 84 -----------------------------------------LVYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRL 120 (189)
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECc
Confidence 999999999999999999999664 3689999999999
Q ss_pred CCCC-----hhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPN-----ALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~-----~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.. ..++++++++.+++|+||||+++.+.++.++.+.
T Consensus 121 DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~ 163 (189)
T cd04121 121 HLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA 163 (189)
T ss_pred cchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 9965 2578899999999999999999777777776553
No 14
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=2.5e-27 Score=219.92 Aligned_cols=150 Identities=19% Similarity=0.286 Sum_probs=129.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
...+||+++|++|||||||++++..+.|...|.||++..+.. ++++.+.+.||||+|+++|+.++..+++++|+++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI- 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL- 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE-
Confidence 357899999999999999999999999999999999987753 5677899999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+ ..|+.++.+. .+++|++|||||+
T Consensus 90 ----------------------------------------lVyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~ 127 (232)
T cd04174 90 ----------------------------------------LCFDISRPETVDSALKKWKAEIMDY--CPSTRILLIGCKT 127 (232)
T ss_pred ----------------------------------------EEEECCChHHHHHHHHHHHHHHHHh--CCCCCEEEEEECc
Confidence 99999999999985 7888888654 2578999999999
Q ss_pred CCCC-----------------hhhHHHHHHHhCC-cEEEEeccchH-HHHHHhhhh
Q psy2970 174 DLPN-----------------ALDEKELIDRIMI-DFWITLTLLIR-WCESFLHHF 210 (329)
Q Consensus 174 Dl~~-----------------~~e~~~l~~~~~~-~~~etSAk~~~-~~~~~l~~i 210 (329)
|+.+ .++++++++++++ .|+||||+++. ..++++..+
T Consensus 128 DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~ 183 (232)
T cd04174 128 DLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSA 183 (232)
T ss_pred ccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHH
Confidence 9953 1578999999998 69999999964 455555443
No 15
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.95 E-value=2.5e-27 Score=203.11 Aligned_cols=150 Identities=17% Similarity=0.291 Sum_probs=131.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++||+++|++|||||||++++..+.+...+.||++..+.. +++..+.+++|||||++++..+++.+++++|+++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i--- 77 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFV--- 77 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEE---
Confidence 5799999999999999999999998887888999866543 4566788999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+..+.+.....++|+++|+||+|+.
T Consensus 78 --------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 78 --------------------------------------LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 999999999999999999999876556789999999999997
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+. .++++++++++++++++||+++.++++++..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 120 DERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred hccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 53 45678889999999999999987777777654
No 16
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.95 E-value=4e-27 Score=213.72 Aligned_cols=148 Identities=17% Similarity=0.346 Sum_probs=126.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++|+++|++|||||||++++..+.|...+.+|++.++. . ++++.+.+++|||+|+++++.++..+++++|+++
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iI--- 77 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII--- 77 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEE---
Confidence 47999999999999999999999998889999987764 2 4566799999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||+++++||+++..|+..+.+. ...++|++|||||+|+.
T Consensus 78 --------------------------------------lVfDvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~ 118 (202)
T cd04120 78 --------------------------------------LVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCE 118 (202)
T ss_pred --------------------------------------EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccc
Confidence 999999999999999998876443 34679999999999996
Q ss_pred Ch-----hhHHHHHHHh-CCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----LDEKELIDRI-MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----~e~~~l~~~~-~~~~~etSAk~~~~~~~~l~~i 210 (329)
+. .+++++++++ ++.|+||||+++.+.++.++.+
T Consensus 119 ~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 119 TDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred cccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 43 4567788886 7899999999966666666444
No 17
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.95 E-value=2.4e-27 Score=207.80 Aligned_cols=150 Identities=19% Similarity=0.329 Sum_probs=130.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
.+||+++|++|||||||++++..+++...+.||++..+. .+++..+.+++|||||+++++.++..+++.+|+++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~i--- 78 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFI--- 78 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEE---
Confidence 589999999999999999999999998888999987665 24667789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+..+.+.....++|+++||||+|+.
T Consensus 79 --------------------------------------lv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 79 --------------------------------------ICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred --------------------------------------EEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 999999999999999887776554334679999999999986
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+. .++.+++++.+++|+||||+++.++++.++.+
T Consensus 121 ~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 121 SQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred hcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence 53 56788899999999999999977777766544
No 18
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.95 E-value=5.4e-27 Score=198.08 Aligned_cols=150 Identities=19% Similarity=0.289 Sum_probs=130.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||+++++.++..+++.+++++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i--- 77 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL--- 77 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEE---
Confidence 4799999999999999999999999988888998866543 4566678999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++..|+.++.+.....++|+++|+||+|+.
T Consensus 78 --------------------------------------~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 78 --------------------------------------CVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999999999999999999888776545689999999999997
Q ss_pred Ch----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+. .++.++++.++.+++++||+++.+.++++..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 120 ARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred cceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence 53 45677888889999999999977777777554
No 19
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.95 E-value=5.5e-27 Score=203.88 Aligned_cols=151 Identities=24% Similarity=0.388 Sum_probs=132.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE--e--e----------CceEEEEEEecCCCccccchHHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK--I--T----------KGNVTIKVWDIGGQPRFRSMWER 84 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~--i--~----------~~~~~l~I~DtpG~e~~~~~~~~ 84 (329)
..+||+++|++|||||||++++.++.+.+.+.||++.++.. + . ...+.+.+|||||++++..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 46899999999999999999999999998999999877653 2 1 34688999999999999999999
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++++|+++ +|||++++++|+.+..|+.++.......++
T Consensus 83 ~~~~~~~~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 121 (180)
T cd04127 83 FFRDAMGFL-----------------------------------------LIFDLTNEQSFLNVRNWMSQLQTHAYCENP 121 (180)
T ss_pred HhCCCCEEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999 999999999999999999988765445679
Q ss_pred cEEEEEEcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 165 PILVLGNKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 165 PIiLVgNK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+++||||+|+.+. .++++++++++++++++||+++.+.+++++.+
T Consensus 122 piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l 172 (180)
T cd04127 122 DIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERL 172 (180)
T ss_pred cEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999653 46788999999999999999987777777655
No 20
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=7.6e-27 Score=206.84 Aligned_cols=157 Identities=31% Similarity=0.614 Sum_probs=134.7
Q ss_pred HHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 12 ~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
+++.+.++++||+++|++|||||||++++..+.+.. +.||++.++..++.+++.+++|||||+++++.++..+++++|+
T Consensus 9 ~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ 87 (182)
T PTZ00133 9 FKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNG 87 (182)
T ss_pred HHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence 456677788999999999999999999999888864 6899998888788888999999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
+| +|||++++++|+....++.+++......++|++||+|
T Consensus 88 iI-----------------------------------------~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 126 (182)
T PTZ00133 88 LI-----------------------------------------FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFAN 126 (182)
T ss_pred EE-----------------------------------------EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEe
Confidence 99 9999999999999999888887654456789999999
Q ss_pred cCCCCChhhHHHHHHHhCC--------cEEEEeccchHHHHHHhhhh
Q psy2970 172 KRDLPNALDEKELIDRIMI--------DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 172 K~Dl~~~~e~~~l~~~~~~--------~~~etSAk~~~~~~~~l~~i 210 (329)
|.|+.+....+++++.++. .++++||+++.++++.++.+
T Consensus 127 K~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l 173 (182)
T PTZ00133 127 KQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWL 173 (182)
T ss_pred CCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHH
Confidence 9999876555566666654 36699999988788777654
No 21
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.95 E-value=8.7e-27 Score=200.83 Aligned_cols=149 Identities=19% Similarity=0.297 Sum_probs=129.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+||+++|++|||||||++++..+.+.+.+.||++.++.. +++..+.+.+|||||++++...+..+++++++++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i-- 79 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL-- 79 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE--
Confidence 3799999999999999999999999988888898877642 4666789999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+.+..|+.++... ...++|+++||||+|+
T Consensus 80 ---------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl 119 (166)
T cd04122 80 ---------------------------------------MVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADL 119 (166)
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccc
Confidence 999999999999999999887554 2357899999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.++ .++++++++.+++++|+||+++.+.++.+..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 120 EAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred ccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 654 56788889999999999999977777765443
No 22
>KOG0394|consensus
Probab=99.95 E-value=9.2e-28 Score=214.06 Aligned_cols=152 Identities=23% Similarity=0.374 Sum_probs=134.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
+.-+||+++|++|||||||+|++..++|...|..|||.++.. ++++.+.++||||+|||+|.++...+++++|..+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 456999999999999999999999999999999999988753 6888899999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc---CCCCcEEEEE
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ---LIGIPILVLG 170 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~---~~~iPIiLVg 170 (329)
+|||+.+++||+++..|-.+.+.... ....|++|+|
T Consensus 87 -----------------------------------------lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilG 125 (210)
T KOG0394|consen 87 -----------------------------------------LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILG 125 (210)
T ss_pred -----------------------------------------EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEc
Confidence 99999999999999999999887543 3568999999
Q ss_pred EcCCCCCh-------hhHHHHHHHhC-CcEEEEeccc-hHHHHHHhhhh
Q psy2970 171 NKRDLPNA-------LDEKELIDRIM-IDFWITLTLL-IRWCESFLHHF 210 (329)
Q Consensus 171 NK~Dl~~~-------~e~~~l~~~~~-~~~~etSAk~-~~~~~~~l~~i 210 (329)
||+|+.+. ..++++++..| +||||||||. .|+.++|....
T Consensus 126 NKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia 174 (210)
T KOG0394|consen 126 NKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIA 174 (210)
T ss_pred ccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHH
Confidence 99999762 45888988876 8999999999 66666665443
No 23
>KOG0075|consensus
Probab=99.95 E-value=1e-27 Score=207.32 Aligned_cols=167 Identities=65% Similarity=1.028 Sum_probs=157.3
Q ss_pred ChHHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
|.+++++.++|+++.||+.++.+.++|..++|||||+|.+..+++.+..+||+|.++++++.+.+.+.+||.|||.+|+.
T Consensus 1 m~~~~~k~L~wi~~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrs 80 (186)
T KOG0075|consen 1 MCAKLRKKLVWICNSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 80 (186)
T ss_pred ChhHHHHHHHHHHHHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
+|+.|++.+++++ ||+|.+|++.++..+..++.++.++.
T Consensus 81 mWerycR~v~aiv-----------------------------------------Y~VDaad~~k~~~sr~EL~~LL~k~~ 119 (186)
T KOG0075|consen 81 MWERYCRGVSAIV-----------------------------------------YVVDAADPDKLEASRSELHDLLDKPS 119 (186)
T ss_pred HHHHHhhcCcEEE-----------------------------------------EEeecCCcccchhhHHHHHHHhcchh
Confidence 9999999999999 99999999999999999999999999
Q ss_pred CCCCcEEEEEEcCCCCChhhHHHHHHHhCC--------cEEEEeccchHHHHHHhh
Q psy2970 161 LIGIPILVLGNKRDLPNALDEKELIDRIMI--------DFWITLTLLIRWCESFLH 208 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~~--------~~~etSAk~~~~~~~~l~ 208 (329)
..++|++|+|||+|++++...+++.+++|+ ..+.+|++...+.+...+
T Consensus 120 l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~ 175 (186)
T KOG0075|consen 120 LTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLD 175 (186)
T ss_pred hcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHH
Confidence 999999999999999999988899999984 478899999666555543
No 24
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.95 E-value=1.1e-26 Score=203.96 Aligned_cols=155 Identities=32% Similarity=0.615 Sum_probs=133.1
Q ss_pred cCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 15 LFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 15 ~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.++++||+++|++|||||||++++..+++. .+.||++.++..+..+.+.+++|||||+++++.++..+++++|+++
T Consensus 8 ~~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii- 85 (175)
T smart00177 8 LFGNKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLI- 85 (175)
T ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEE-
Confidence 34467899999999999999999999888775 5789999888777778899999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||+++++++++...++.++++.....++|++||+||+|
T Consensus 86 ----------------------------------------~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D 125 (175)
T smart00177 86 ----------------------------------------FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQD 125 (175)
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcC
Confidence 9999999999999999999987654456799999999999
Q ss_pred CCChhhHHHHHHHhCC--------cEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNALDEKELIDRIMI--------DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~~e~~~l~~~~~~--------~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+....+++.+.++. .++++||+++.+.++.++.+.
T Consensus 126 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 170 (175)
T smart00177 126 LPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLS 170 (175)
T ss_pred cccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHH
Confidence 9876556666666654 366899999888888776554
No 25
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.95 E-value=1.1e-26 Score=204.32 Aligned_cols=147 Identities=16% Similarity=0.247 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE-E--eeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR-K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~-~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||++++..+.|...+.||++..+. . ++++.+.+.+|||+|++++..++..+++++|+++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~i---- 77 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL---- 77 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEE----
Confidence 69999999999999999999999998889999998775 2 4566689999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++.. |+.++... ..++|++|||||+|+.
T Consensus 78 -------------------------------------lv~d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~ 118 (175)
T cd01874 78 -------------------------------------VCFSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLR 118 (175)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhh
Confidence 9999999999999975 77666543 3579999999999985
Q ss_pred Ch-----------------hhHHHHHHHhC-CcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----------------LDEKELIDRIM-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----------------~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i 210 (329)
+. .++++++++++ ..|+|+||+++.+.+++++.+
T Consensus 119 ~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~ 170 (175)
T cd01874 119 DDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEA 170 (175)
T ss_pred hChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHH
Confidence 42 34566888887 689999999987777777554
No 26
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.95 E-value=1.6e-26 Score=197.56 Aligned_cols=151 Identities=17% Similarity=0.294 Sum_probs=129.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++||+++|++|||||||++++..+.+.+.+.||++..+. .+++..+.+++|||||++++..++..+++++|+++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i--- 77 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI--- 77 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEE---
Confidence 479999999999999999999999998888888764333 24566778999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++..|+..+.+.....++|+++||||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 78 --------------------------------------VVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 999999999999999999988775445789999999999985
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.. .+...+++.++.+++++||+++..+++++..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred hcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 43 356778888889999999999777777765543
No 27
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=2.3e-26 Score=205.77 Aligned_cols=150 Identities=25% Similarity=0.318 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----ee-CceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----IT-KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~-~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+||+++|++|||||||++++.++.+...+.||++.++.. ++ +..+.+.+|||||+++++.++..+++++++++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~i-- 78 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAI-- 78 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEE--
Confidence 589999999999999999999999988899999976542 34 66889999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC---cCCCCcEEEEEEc
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP---QLIGIPILVLGNK 172 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~---~~~~iPIiLVgNK 172 (329)
+|||++++++|+++..|+.++.... ...++|++|||||
T Consensus 79 ---------------------------------------lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK 119 (201)
T cd04107 79 ---------------------------------------IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANK 119 (201)
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEEC
Confidence 9999999999999999988775432 2367999999999
Q ss_pred CCCCC-----hhhHHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPN-----ALDEKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~-----~~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+ ..++++++++.+ .+++++||+++.+.+++++.+.
T Consensus 120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~ 164 (201)
T cd04107 120 CDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLV 164 (201)
T ss_pred CCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHH
Confidence 99963 256888999998 6899999999777777665553
No 28
>PTZ00369 Ras-like protein; Provisional
Probab=99.94 E-value=2.5e-26 Score=203.64 Aligned_cols=153 Identities=20% Similarity=0.281 Sum_probs=133.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..++||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+++|||||++++..++..+++.+++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii- 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL- 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE-
Confidence 357999999999999999999999999988889999877763 5677889999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+.++.+.....++|+++|+||+|
T Consensus 82 ----------------------------------------lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 121 (189)
T PTZ00369 82 ----------------------------------------CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCD 121 (189)
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 9999999999999999999887764456899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .++.++++.++.+++++||+++.+++..+..+.
T Consensus 122 l~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~ 163 (189)
T PTZ00369 122 LDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELV 163 (189)
T ss_pred cccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 9643 346778888899999999999777777765553
No 29
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.94 E-value=2.5e-26 Score=195.13 Aligned_cols=149 Identities=17% Similarity=0.346 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++++...+.||++.++. . +++..+.+++|||||++.+..++..+++++++++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i--- 77 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVL--- 77 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEE---
Confidence 58999999999999999999999998889999987763 2 4567789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC----CCCcEEEEEEc
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL----IGIPILVLGNK 172 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~----~~iPIiLVgNK 172 (329)
+|||++++++|+.+..|+.++.+.... .++|+++|+||
T Consensus 78 --------------------------------------lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 119 (168)
T cd04119 78 --------------------------------------LVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANK 119 (168)
T ss_pred --------------------------------------EEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEc
Confidence 999999999999999999988765332 57999999999
Q ss_pred CCCCC-----hhhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPN-----ALDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~-----~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+.+ ..+.+.++++.+++++++||+++.+.+++++.+
T Consensus 120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 162 (168)
T cd04119 120 IDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTL 162 (168)
T ss_pred hhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99973 245667888889999999999977777777654
No 30
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.94 E-value=1.3e-26 Score=202.33 Aligned_cols=153 Identities=33% Similarity=0.612 Sum_probs=128.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 16 ~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+.++++||+++|++|||||||++++..+.+. .+.||+|.++..+..+.+.+++|||||+++++.++..+++++|+++
T Consensus 5 ~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii-- 81 (168)
T cd04149 5 FGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI-- 81 (168)
T ss_pred cCCCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEE--
Confidence 3467899999999999999999999988775 4688999888777778899999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++.+|+++..++.+++......++|++||+||+|+
T Consensus 82 ---------------------------------------~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 122 (168)
T cd04149 82 ---------------------------------------FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDL 122 (168)
T ss_pred ---------------------------------------EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCC
Confidence 99999999999999999998887654567999999999999
Q ss_pred CChhhHHHHHHHh--------CCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNALDEKELIDRI--------MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~~e~~~l~~~~--------~~~~~etSAk~~~~~~~~l~~i 210 (329)
.+....+++.+.+ ...++++||+++.+.++.+..+
T Consensus 123 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 123 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred ccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence 7643333333332 2368999999987777776554
No 31
>KOG0079|consensus
Probab=99.94 E-value=2.4e-27 Score=205.47 Aligned_cols=149 Identities=23% Similarity=0.457 Sum_probs=136.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
-+|.+++|++|||||+|+.+|..+.|...|..|+|.++. .++++.++++||||+|+|+|+.+...|+++.++++
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~-- 85 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI-- 85 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE--
Confidence 367899999999999999999999999999999998875 26788999999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||+++.+||.+...|++++.+. .+.+|-++||||.|.
T Consensus 86 ---------------------------------------vVYDVTn~ESF~Nv~rWLeei~~n--cdsv~~vLVGNK~d~ 124 (198)
T KOG0079|consen 86 ---------------------------------------VVYDVTNGESFNNVKRWLEEIRNN--CDSVPKVLVGNKNDD 124 (198)
T ss_pred ---------------------------------------EEEECcchhhhHhHHHHHHHHHhc--CccccceecccCCCC
Confidence 999999999999999999999776 458899999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++. .++..++...++.+||||||...+.|+-++-+.
T Consensus 125 ~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit 165 (198)
T KOG0079|consen 125 PERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCIT 165 (198)
T ss_pred ccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHH
Confidence 875 678999999999999999999888888777665
No 32
>KOG0087|consensus
Probab=99.94 E-value=6.5e-27 Score=212.30 Aligned_cols=148 Identities=24% Similarity=0.392 Sum_probs=134.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||-|+.||..++|..+..+|+|+++.. ++++.++.+||||+|||+|+.....|+++|.+.+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 456899999999999999999999999998889999999875 6899999999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++...+|+++..|+.++.++.. ++++|+|||||+
T Consensus 92 -----------------------------------------lVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~ 129 (222)
T KOG0087|consen 92 -----------------------------------------LVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKS 129 (222)
T ss_pred -----------------------------------------EEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecch
Confidence 99999999999999999999998754 699999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFL 207 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l 207 (329)
||... ++++.++++.++.|+||||....+++..+
T Consensus 130 DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 130 DLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF 168 (222)
T ss_pred hhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence 99763 78999999999999999999944444433
No 33
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.94 E-value=3.1e-26 Score=197.68 Aligned_cols=148 Identities=21% Similarity=0.359 Sum_probs=128.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++..+++.+.+.||++.++. . +++..+.+++|||+|++++..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i--- 77 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIF--- 77 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEE---
Confidence 58999999999999999999999998888999997764 2 3455688999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+.++.+.. ..++|+++||||.|+.
T Consensus 78 --------------------------------------~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 78 --------------------------------------LVYDISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEE 118 (161)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc
Confidence 9999999999999999998886542 3579999999999996
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+. .++..+++.++++|+|+||+++.+.++.++.+
T Consensus 119 ~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l 157 (161)
T cd04117 119 QKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRL 157 (161)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 43 56888999999999999999977777766554
No 34
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.94 E-value=3.7e-26 Score=197.04 Aligned_cols=149 Identities=21% Similarity=0.418 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++++...+.||++.++. . .+++.+.+++|||||++++..++..+++++++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l--- 78 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI--- 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEE---
Confidence 79999999999999999999999998888999986653 2 2456689999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+.++.+. ...++|+++||||+|+.
T Consensus 79 --------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 79 --------------------------------------LMYDITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDME 119 (165)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccC
Confidence 999999999999999999888553 23578999999999996
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .+++++++.++++++++||+++.+.+++++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 120 DERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred cccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 53 456778888999999999999888888776653
No 35
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.94 E-value=4.5e-26 Score=193.91 Aligned_cols=150 Identities=21% Similarity=0.304 Sum_probs=130.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+++|||||++++..++..+++++|+++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i--- 78 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFL--- 78 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEE---
Confidence 5899999999999999999999998888888888865543 5666788999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+.++.+.....++|+++|+||+|+.
T Consensus 79 --------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 79 --------------------------------------LVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 999999999999999999988775445689999999999996
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.. .+..++++.++.+++++||+++.+.+++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 121 HQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred ccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 53 45677888889999999999977777777654
No 36
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.94 E-value=3.8e-26 Score=195.09 Aligned_cols=149 Identities=22% Similarity=0.317 Sum_probs=129.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||++++.++.+...+.||++..+.. ++++.+.+++|||||++++..++..+++.+++++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i---- 76 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFL---- 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEE----
Confidence 489999999999999999999999888888888755543 4566789999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|||++++++|+++..|+..+.+.....++|+++||||+|+.+
T Consensus 77 -------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 77 -------------------------------------LVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999999999988887655556899999999999975
Q ss_pred h-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 178 A-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 178 ~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
. .++++++++++.+++++||+++.+.+++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 157 (164)
T smart00173 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDL 157 (164)
T ss_pred cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHH
Confidence 3 45677888899999999999977777777655
No 37
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.94 E-value=5.1e-26 Score=199.04 Aligned_cols=150 Identities=24% Similarity=0.468 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
.||+++|++|||||||++++.++.|...|.||++.++.. +++..+.+++|||||++++..++..+++++|+++
T Consensus 1 ~ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i--- 77 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAII--- 77 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEE---
Confidence 389999999999999999999999998999999977642 3566788999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++++.+..|+.++.+.....++|+++||||+|+.
T Consensus 78 --------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 78 --------------------------------------IVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred --------------------------------------EEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 999999999999999999998765444568899999999996
Q ss_pred Ch-------hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-------LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-------~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .++..++++++.+++++||+++.++++++..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 120 SPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 43 234577888899999999999777777776553
No 38
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.94 E-value=3.8e-26 Score=197.27 Aligned_cols=148 Identities=30% Similarity=0.606 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYI 100 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~ 100 (329)
+||+++|.+|||||||++++..+.+. .+.||+|.++..+..+.+.+.+|||||++++..++..+++++|+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i------- 72 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI------- 72 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE-------
Confidence 58999999999999999999888886 5789999888777778899999999999999999999999999999
Q ss_pred ehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh
Q psy2970 101 VSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180 (329)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e 180 (329)
+|||++++++|++...++.+++......++|++|++||+|+.+...
T Consensus 73 ----------------------------------~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~ 118 (159)
T cd04150 73 ----------------------------------FVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS 118 (159)
T ss_pred ----------------------------------EEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC
Confidence 9999999999999999999887654456799999999999976544
Q ss_pred HHHHHHHhCC--------cEEEEeccchHHHHHHhhhh
Q psy2970 181 EKELIDRIMI--------DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 181 ~~~l~~~~~~--------~~~etSAk~~~~~~~~l~~i 210 (329)
.+++.++++. .++++||+++.+.++.++.+
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l 156 (159)
T cd04150 119 AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWL 156 (159)
T ss_pred HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHH
Confidence 4444444432 47799999988788777654
No 39
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.94 E-value=7.5e-26 Score=192.57 Aligned_cols=148 Identities=20% Similarity=0.381 Sum_probs=129.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----ee--CceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----IT--KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~--~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
+||+++|++|||||||++++.++.+...+.||++.++.. +. ...+.+++|||||++++..++..+++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v- 79 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACI- 79 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEE-
Confidence 589999999999999999999999988889999987743 23 56789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+..+... ..++|+++|+||+|
T Consensus 80 ----------------------------------------~v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~D 117 (162)
T cd04106 80 ----------------------------------------LVFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKID 117 (162)
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChh
Confidence 999999999999999998887553 35799999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .++++++++++++++++||+++..++++++.+.
T Consensus 118 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 118 LLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred cccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 8653 457788999999999999999777787776553
No 40
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.94 E-value=4.7e-26 Score=209.93 Aligned_cols=149 Identities=17% Similarity=0.261 Sum_probs=124.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++||+++|++|||||||++++..+.|...|.||++..+. .++++.+.+.+|||+|++.|..+++.+++++|+++
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~il--- 77 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVL--- 77 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEE---
Confidence 479999999999999999999999999899999998775 35677899999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++..++...+.. ..+++|++|||||+|+.
T Consensus 78 --------------------------------------lvfdis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 78 --------------------------------------ICFDISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMR 118 (222)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccc
Confidence 999999999999996544433333 24689999999999995
Q ss_pred Ch-----------------hhHHHHHHHhCC-cEEEEeccc-hH-HHHHHhhhh
Q psy2970 177 NA-----------------LDEKELIDRIMI-DFWITLTLL-IR-WCESFLHHF 210 (329)
Q Consensus 177 ~~-----------------~e~~~l~~~~~~-~~~etSAk~-~~-~~~~~l~~i 210 (329)
+. ++++++++++++ +|+||||++ .+ +.+.|...+
T Consensus 119 ~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~ 172 (222)
T cd04173 119 TDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVAT 172 (222)
T ss_pred cchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHH
Confidence 41 468889999995 899999998 43 444444433
No 41
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.94 E-value=8e-26 Score=198.72 Aligned_cols=148 Identities=18% Similarity=0.256 Sum_probs=126.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||+.++..+.+...+.||++..+. .++++.+.+.+|||+|++++..+++.+++++|++|
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i---- 77 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL---- 77 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEE----
Confidence 79999999999999999999999998889999876554 35667789999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++. .|+..+... ..++|++|||||+|+.
T Consensus 78 -------------------------------------lv~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~ 118 (174)
T cd01871 78 -------------------------------------ICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLR 118 (174)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhc
Confidence 999999999999996 476666543 3579999999999995
Q ss_pred Ch-----------------hhHHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----------------LDEKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----------------~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .++++++++++ ++|+||||+++.+.+++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 171 (174)
T cd01871 119 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAI 171 (174)
T ss_pred cChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHH
Confidence 32 35677899998 4999999999888888776553
No 42
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.94 E-value=1.1e-25 Score=193.29 Aligned_cols=150 Identities=23% Similarity=0.432 Sum_probs=129.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
-+||+++|++|||||||++++.++++...+.||++.++. . +++..+.+++|||||++++..++..+++++|+++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii-- 79 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII-- 79 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEE--
Confidence 379999999999999999999999998888888887654 2 3556788999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+++..|+.++.+.. ..+.|+++|+||+|+
T Consensus 80 ---------------------------------------~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl 119 (166)
T cd01869 80 ---------------------------------------IVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDL 119 (166)
T ss_pred ---------------------------------------EEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhc
Confidence 9999999999999999999886542 357899999999998
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+. .++.++++.++++++++||+++.+.++++..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 120 TDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred ccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 654 557888999999999999999777777776553
No 43
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.94 E-value=1.1e-25 Score=194.14 Aligned_cols=150 Identities=19% Similarity=0.275 Sum_probs=128.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
.+||+++|++|||||||++++.++.+...+.||++..+.. .+.+.+.+.+|||||++++..++..+++.+++++
T Consensus 1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i--- 77 (165)
T cd04140 1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFI--- 77 (165)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEE---
Confidence 3799999999999999999999999988888988866653 3566788999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC--cCCCCcEEEEEEcCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP--QLIGIPILVLGNKRD 174 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~--~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+++..|+..+.+.. ...++|+++|+||+|
T Consensus 78 --------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~D 119 (165)
T cd04140 78 --------------------------------------LVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCD 119 (165)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcc
Confidence 9999999999999999887665432 236799999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. .++..+++.++++++|+||+++.+.+++++.+
T Consensus 120 l~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 120 ESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9652 34566788889999999999988888877654
No 44
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.94 E-value=7e-26 Score=193.10 Aligned_cols=146 Identities=26% Similarity=0.510 Sum_probs=129.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
||+++|++|||||||++++.++.+.+.+.||+|.+... ++...+.+++||++|++++..++..+++++|+++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i---- 76 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAII---- 76 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEE----
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence 89999999999999999999999999999999766643 4577889999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|||+++++||+.+..|+..+..... .++|++|+|||.|+.+
T Consensus 77 -------------------------------------i~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 77 -------------------------------------IVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSD 118 (162)
T ss_dssp -------------------------------------EEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGG
T ss_pred -------------------------------------cccccccccccccccccccccccccc-ccccceeeeccccccc
Confidence 99999999999999999999877533 4699999999999986
Q ss_pred h-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhh
Q psy2970 178 A-----LDEKELIDRIMIDFWITLTLLIRWCESFLHH 209 (329)
Q Consensus 178 ~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~ 209 (329)
. .++++++++++.+|+|+||++.....+.+..
T Consensus 119 ~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 119 EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHH
T ss_pred cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHH
Confidence 3 5688999999999999999996666665544
No 45
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.94 E-value=5.7e-26 Score=201.54 Aligned_cols=149 Identities=17% Similarity=0.247 Sum_probs=127.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
||+++|++|||||||+++|..+.+...+.||++..+.. +++..+.+++|||||+++++.++..+++.+|+++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i----- 75 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFI----- 75 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEE-----
Confidence 68999999999999999999999988888998866543 4566788999999999999999999999999999
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc--CCCCcEEEEEEcCCCC
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ--LIGIPILVLGNKRDLP 176 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~--~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+..+.+... ..++|+++||||+|+.
T Consensus 76 ------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 76 ------------------------------------LVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred ------------------------------------EEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 99999999999999999888765422 3579999999999996
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .++.++++.++++++++||+++.+.++++..+.
T Consensus 120 ~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred ccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 42 456778888999999999999777777766553
No 46
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.94 E-value=1.2e-25 Score=194.26 Aligned_cols=149 Identities=24% Similarity=0.422 Sum_probs=129.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+||+++|++|||||||++++.++++...+.||++..+. . +++..+.+++|||||++++..++..+++++|+++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i-- 80 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII-- 80 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE--
Confidence 489999999999999999999999999889999987654 2 3556688999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+++..|+.++.+. ...++|+++||||+|+
T Consensus 81 ---------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl 120 (167)
T cd01867 81 ---------------------------------------LVYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDM 120 (167)
T ss_pred ---------------------------------------EEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECccc
Confidence 999999999999999999988664 2367999999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.+. .++.++++.++.+++++||++....+++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 121 EEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 753 45678888999999999999977777766554
No 47
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.94 E-value=1.2e-25 Score=206.95 Aligned_cols=148 Identities=24% Similarity=0.356 Sum_probs=129.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYI 100 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~ 100 (329)
+||+++|++|||||||++++..++|.. +.||++..+.....+.+.+.||||+|++.++.++..+++++|++|
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~I------- 72 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVI------- 72 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEE-------
Confidence 589999999999999999999999874 689999887666667789999999999999999999999999999
Q ss_pred ehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC---
Q psy2970 101 VSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--- 177 (329)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~--- 177 (329)
+|||++++++|+++..|+..+.+. ...++|++|||||+|+.+
T Consensus 73 ----------------------------------lV~Dvt~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~ 117 (220)
T cd04126 73 ----------------------------------LTYDVSNVQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGA 117 (220)
T ss_pred ----------------------------------EEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccc
Confidence 999999999999999999888764 246799999999999965
Q ss_pred ---------------------hhhHHHHHHHhC--------------CcEEEEeccchHHHHHHhhhhc
Q psy2970 178 ---------------------ALDEKELIDRIM--------------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 178 ---------------------~~e~~~l~~~~~--------------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++++.++++++ ++|+||||+++.+.++++..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~ 186 (220)
T cd04126 118 LAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLF 186 (220)
T ss_pred cccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHH
Confidence 156888999887 6899999999777777776553
No 48
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.94 E-value=1.4e-25 Score=194.58 Aligned_cols=150 Identities=23% Similarity=0.405 Sum_probs=128.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCcccc-chHHHHhhccceeEe
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFR-SMWERYCRGVNAIVW 94 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~-~~~~~~~~~ad~iI~ 94 (329)
.+||+++|++|||||||++++..+.+...+.+|++.++.. +++..+.+++|||+|+++++ .++..+++++|+++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i- 80 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV- 80 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE-
Confidence 5899999999999999999999999988888999876643 45667899999999999886 57888999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+.++.......++|+++|+||+|
T Consensus 81 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 120 (170)
T cd04115 81 ----------------------------------------FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCD 120 (170)
T ss_pred ----------------------------------------EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 9999999999999999998887765457899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccc---hHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLL---IRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~---~~~~~~~l~~i 210 (329)
+.+. .+++++++..+++|+|+||++ ....++++..+
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l 164 (170)
T cd04115 121 LREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTL 164 (170)
T ss_pred chhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHH
Confidence 8653 457788888999999999998 55556555443
No 49
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=9.3e-26 Score=200.27 Aligned_cols=147 Identities=22% Similarity=0.316 Sum_probs=124.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
.||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+++|||+|++.+..++..+++++++++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~i---- 76 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIM---- 76 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEE----
Confidence 389999999999999999999999988889999877653 4566789999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+. .|+..+.+. ..++|++|||||+|+.
T Consensus 77 -------------------------------------lv~dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~ 117 (189)
T cd04134 77 -------------------------------------LCFSVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLR 117 (189)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhc
Confidence 999999999999986 577777654 3579999999999997
Q ss_pred Chh-----------------hHHHHHHHhC-CcEEEEeccchHHHHHHhhhh
Q psy2970 177 NAL-----------------DEKELIDRIM-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~~-----------------e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i 210 (329)
+.. ++.+++++.+ ++|+||||+++.+.++.+..+
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l 169 (189)
T cd04134 118 EARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEA 169 (189)
T ss_pred cChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHH
Confidence 542 2456777777 789999999977777766554
No 50
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.94 E-value=1.2e-25 Score=199.71 Aligned_cols=147 Identities=23% Similarity=0.382 Sum_probs=126.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++..+.|...+.||+|.++. . +++..+.+++|||+|++++..++..+++++|+++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~ii--- 77 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAIL--- 77 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEE---
Confidence 58999999999999999999999998889999998764 2 3566789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++..|+.++.+.. ..++| ++||||+|+.
T Consensus 78 --------------------------------------lv~D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 78 --------------------------------------FMFDLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLF 117 (182)
T ss_pred --------------------------------------EEEECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhcc
Confidence 9999999999999999999887642 24567 5789999995
Q ss_pred Ch----------hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA----------LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~----------~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.+ .+++++++.++.+++++||+++.+.++++..+
T Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l 161 (182)
T cd04128 118 ADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIV 161 (182)
T ss_pred ccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 21 24567888899999999999977777777655
No 51
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.94 E-value=2.1e-25 Score=192.28 Aligned_cols=151 Identities=21% Similarity=0.370 Sum_probs=129.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..+||+++|++|||||||++++.++.+.+.+.+|++.++. .++++.+.+++|||||+++++.++..+++.+|+++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i- 82 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL- 82 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE-
Confidence 5689999999999999999999999998888899887653 25677889999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc---CCCCcEEEEEE
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ---LIGIPILVLGN 171 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~---~~~iPIiLVgN 171 (329)
+|||++++++|+.+..|..++.+... ..++|+++|||
T Consensus 83 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~n 122 (170)
T cd04116 83 ----------------------------------------LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGN 122 (170)
T ss_pred ----------------------------------------EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 99999999999999999888876432 35789999999
Q ss_pred cCCCCCh----hhHHHHHHHhC-CcEEEEeccchHHHHHHhhhh
Q psy2970 172 KRDLPNA----LDEKELIDRIM-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 172 K~Dl~~~----~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i 210 (329)
|+|+... .++++++++++ .+++++||+++...++.++.+
T Consensus 123 K~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~ 166 (170)
T cd04116 123 KNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEA 166 (170)
T ss_pred CccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHH
Confidence 9999642 56788888888 479999999977677666544
No 52
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.94 E-value=1.6e-25 Score=203.03 Aligned_cols=150 Identities=19% Similarity=0.327 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE--e--e-CceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK--I--T-KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~--i--~-~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+||+++|++|||||||+++|.++.+...+.||++.++.. + + ...+.++||||+|++.+..++..+++++|+++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~ii-- 78 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVF-- 78 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEE--
Confidence 589999999999999999999999998999999977642 2 2 34689999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc--CCCCcEEEEEEcC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ--LIGIPILVLGNKR 173 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~--~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+..|+..+.+... ..++|+++||||+
T Consensus 79 ---------------------------------------lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~ 119 (215)
T cd04109 79 ---------------------------------------LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKT 119 (215)
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECc
Confidence 99999999999999999888876432 2467899999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .+++++++.++++++++||+++.+++++++.+.
T Consensus 120 DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~ 162 (215)
T cd04109 120 DLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLA 162 (215)
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99743 457789999999999999999777777776553
No 53
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.93 E-value=2e-25 Score=195.91 Aligned_cols=148 Identities=18% Similarity=0.287 Sum_probs=125.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE-e--e-CceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK-I--T-KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~-i--~-~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++.+...+.||++..+.. + . +..+.+.+|||||++++..++..+++++|+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii--- 77 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLL--- 77 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEE---
Confidence 589999999999999999999999988899999877643 2 2 55788999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+++.. |+..+... ..++|+++||||+|+
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl 117 (187)
T cd04132 78 --------------------------------------ICYAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDL 117 (187)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhh
Confidence 9999999999999975 66666443 357999999999998
Q ss_pred CC---------hhhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 176 PN---------ALDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~---------~~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
.. ..+++++++.++. +++++||+++.+.+++++.+.
T Consensus 118 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 163 (187)
T cd04132 118 RKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAI 163 (187)
T ss_pred hhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHH
Confidence 65 2467788999998 899999999777777665553
No 54
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.93 E-value=2.4e-25 Score=191.85 Aligned_cols=147 Identities=18% Similarity=0.291 Sum_probs=126.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++..+.+.+.+.+|.+..+.. ++.+.+.+.+|||+|++++..++..+++++|+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i--- 77 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACI--- 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEE---
Confidence 589999999999999999999999987777887765432 4667789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++.+++.+..|+..+.+. ..++|+++|+||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 78 --------------------------------------LVFDVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLD 117 (161)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCc
Confidence 999999999999999999888654 3578999999999986
Q ss_pred Ch--hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA--LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~--~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.. .+..++++..+++++++||+++.+.+++++.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 153 (161)
T cd04124 118 PSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDA 153 (161)
T ss_pred hhHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 54 34556777788999999999987777777655
No 55
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.93 E-value=2.5e-25 Score=193.45 Aligned_cols=148 Identities=24% Similarity=0.401 Sum_probs=127.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe----eCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++..+.+...+.||++.++... +.+.+.+.+|||+|++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i--- 77 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAI--- 77 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEE---
Confidence 5899999999999999999999998888899998877643 456789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+.++.+.. .++|+++||||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~ 117 (166)
T cd00877 78 --------------------------------------IMFDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIK 117 (166)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcc
Confidence 9999999999999999999987653 389999999999997
Q ss_pred Ch---hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA---LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~---~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .+..++++..+++++|+||+++.+.+++++.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 118 DRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred cccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence 43 334556777788999999999878888776653
No 56
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.93 E-value=1.3e-25 Score=195.10 Aligned_cols=144 Identities=29% Similarity=0.559 Sum_probs=125.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIV 101 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~ 101 (329)
+|+++|++|||||||++++.++.+...+.||+|.....++.+++.+.+|||||+++++.++..+++++|+++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii-------- 72 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLI-------- 72 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEE--------
Confidence 489999999999999999999988888899999887778888999999999999999999999999999999
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChh--
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL-- 179 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~-- 179 (329)
+|||.+++.+|+....|+.++.... .++|+++|+||+|+.++.
T Consensus 73 ---------------------------------~V~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~ 117 (164)
T cd04162 73 ---------------------------------FVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSV 117 (164)
T ss_pred ---------------------------------EEEECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCH
Confidence 9999999999999999999887543 689999999999997653
Q ss_pred -------hHHHHHHHhCCcEEEEeccc------hHHHHHHhh
Q psy2970 180 -------DEKELIDRIMIDFWITLTLL------IRWCESFLH 208 (329)
Q Consensus 180 -------e~~~l~~~~~~~~~etSAk~------~~~~~~~l~ 208 (329)
+++.++++.++.+++|||++ ....++++.
T Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 118 QEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 23455566678899999999 555555554
No 57
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=2.4e-25 Score=202.23 Aligned_cols=151 Identities=21% Similarity=0.357 Sum_probs=130.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE--e---eCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK--I---TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~--i---~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
++||+++|++|||||||++++.++.+...+.||++.++.. + ++..+.+++|||+|++++..++..+++++|+++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii- 80 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL- 80 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE-
Confidence 5899999999999999999999999988888999877643 2 345689999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+++..|+.++.+.....++|++|||||+|
T Consensus 81 ----------------------------------------lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~D 120 (211)
T cd04111 81 ----------------------------------------LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120 (211)
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccc
Confidence 9999999999999999999987764445688999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .+.+++++.++++++|+||+++.+.+++++.+.
T Consensus 121 l~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~ 162 (211)
T cd04111 121 LESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLT 162 (211)
T ss_pred cccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9653 567889999999999999999766777665553
No 58
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.93 E-value=3.3e-25 Score=198.52 Aligned_cols=151 Identities=22% Similarity=0.395 Sum_probs=131.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||++++.++.+...+.||++.++.. +++..+.+.+|||||++.++.++..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 356899999999999999999999999988889999876542 3456678999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+..|+..+... ...+|++|||||+
T Consensus 84 -----------------------------------------lv~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~ 120 (199)
T cd04110 84 -----------------------------------------VVYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKN 120 (199)
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECc
Confidence 999999999999999999988654 3578999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++.++++.++.+++++||+++.+++++++.+.
T Consensus 121 Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 121 DDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence 99653 456778888899999999999878888776664
No 59
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.93 E-value=2.3e-25 Score=203.64 Aligned_cols=150 Identities=22% Similarity=0.335 Sum_probs=129.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe----eCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||++++..+++...+.||+|.++... +.+.+.+.+|||+|++++..++..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 4679999999999999999999999999888999999877642 456789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+..|+.++.+. ..++|++|||||+
T Consensus 91 -----------------------------------------lvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~ 127 (219)
T PLN03071 91 -----------------------------------------IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (219)
T ss_pred -----------------------------------------EEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEch
Confidence 999999999999999999998765 3579999999999
Q ss_pred CCCCh---hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA---LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~---~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .+..+++++.+++|+||||+++.+.++.+..+
T Consensus 128 Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred hhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 99643 12226777788999999999976666666544
No 60
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.93 E-value=3.7e-25 Score=189.54 Aligned_cols=149 Identities=23% Similarity=0.390 Sum_probs=128.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+||+++|++|||||||++++.++++...+.||++.++.. +++..+.+.+||+||++++..++..+++.+++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i-- 80 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL-- 80 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE--
Confidence 4799999999999999999999999887888998876543 3455678999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+.+..|+.++.+.. ..++|++||+||+|+
T Consensus 81 ---------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl 120 (165)
T cd01868 81 ---------------------------------------LVYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDL 120 (165)
T ss_pred ---------------------------------------EEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccc
Confidence 9999999999999999999887653 346899999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
... .+.+.++++.+++++|+||+++.+.+++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred cccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 653 45677888888999999999987888877654
No 61
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=3.6e-25 Score=195.29 Aligned_cols=149 Identities=22% Similarity=0.373 Sum_probs=127.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++.+...+.||++.++. .++++.+.+++|||||++++..++..+++++|+++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ii--- 77 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYL--- 77 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEE---
Confidence 58999999999999999999999998778899986654 24566789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++..|+.++.... ..++|+++||||+|+.
T Consensus 78 --------------------------------------lv~d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 78 --------------------------------------LVYDVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLV 118 (188)
T ss_pred --------------------------------------EEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCc
Confidence 9999999999999999998886542 3468999999999997
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .++..+++..+++++|+||++....++++..+.
T Consensus 119 ~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~ 158 (188)
T cd04125 119 NNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV 158 (188)
T ss_pred ccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 43 456778888899999999999777776665543
No 62
>KOG0081|consensus
Probab=99.93 E-value=5.1e-27 Score=205.50 Aligned_cols=164 Identities=24% Similarity=0.368 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE--e-----------eCceEEEEEEecCCCccccchHHHHhh
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK--I-----------TKGNVTIKVWDIGGQPRFRSMWERYCR 87 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~--i-----------~~~~~~l~I~DtpG~e~~~~~~~~~~~ 87 (329)
+|.+.+|++||||||++.+++.++|.++.++|+|++++. + ....+.+++|||+|||+|+++.-.+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 688899999999999999999999999999999998874 1 234577999999999999999999999
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
+|-+++ ++||+++..||.++++|+.++.-+....++.|+
T Consensus 90 DAMGFl-----------------------------------------LiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDiv 128 (219)
T KOG0081|consen 90 DAMGFL-----------------------------------------LIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIV 128 (219)
T ss_pred hhccce-----------------------------------------EEEeccchHHHHHHHHHHHHHHHhhccCCCCEE
Confidence 999999 999999999999999999999888777888999
Q ss_pred EEEEcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHH----hhhhcCCCchhhhcCCcch
Q psy2970 168 VLGNKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESF----LHHFGSHPNWAVKWHTLPK 225 (329)
Q Consensus 168 LVgNK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~----l~~i~~~~~~~~~~~~~~~ 225 (329)
++|||+||++. +++.++++++++|||||||-++.+.++. +..+...++..+....+|.
T Consensus 129 lcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~~v~~s~~p~ 195 (219)
T KOG0081|consen 129 LCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQCVEKSEIPL 195 (219)
T ss_pred EEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence 99999999875 5688999999999999999995444443 3333333444444444443
No 63
>KOG0093|consensus
Probab=99.93 E-value=9.3e-26 Score=195.37 Aligned_cols=146 Identities=21% Similarity=0.442 Sum_probs=130.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE--e--eCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~--i--~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+|++++|+..||||||+.++.++.|...+..|+|++++- + ..+.++++||||+|+|+++.+.-.++++++++|
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi-- 98 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI-- 98 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE--
Confidence 4699999999999999999999999999999999998763 2 356689999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
++||++|.+||..+..|...+... ...++|||+||||||+
T Consensus 99 ---------------------------------------LmyDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDm 138 (193)
T KOG0093|consen 99 ---------------------------------------LMYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDM 138 (193)
T ss_pred ---------------------------------------EEEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCC
Confidence 999999999999999999888554 4579999999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFL 207 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l 207 (329)
.++ +.+..+++++|.+|||+|||...+.+..+
T Consensus 139 d~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 139 DSERVISHERGRQLADQLGFEFFETSAKENINVKQVF 175 (193)
T ss_pred ccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHH
Confidence 887 56889999999999999999944444433
No 64
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.93 E-value=5.1e-25 Score=192.60 Aligned_cols=158 Identities=28% Similarity=0.477 Sum_probs=133.0
Q ss_pred HHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 12 ~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
++..+.++.+||+++|++|||||||++++..+.+.. +.||++.++..+..+...+.+|||||++.+...+..+++++|+
T Consensus 7 ~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 85 (174)
T cd04153 7 WSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDA 85 (174)
T ss_pred HHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCE
Confidence 344445578999999999999999999999988764 6889998888877788999999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
++ +|+|+++++++.....++.++++.....++|+++++|
T Consensus 86 vi-----------------------------------------~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~N 124 (174)
T cd04153 86 VI-----------------------------------------LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLAN 124 (174)
T ss_pred EE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEE
Confidence 99 9999999999999988888887765556799999999
Q ss_pred cCCCCChhhHHHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 172 KRDLPNALDEKELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 172 K~Dl~~~~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+|+.+..+.+++.+.++ ++++++||+++.++++.++.+.
T Consensus 125 K~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 125 KQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred CCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHh
Confidence 999986544444444443 4689999999888888877653
No 65
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.93 E-value=5.7e-25 Score=190.15 Aligned_cols=150 Identities=17% Similarity=0.291 Sum_probs=128.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++||+++|++|||||||++++.++.+...+.||++..+.+ +++..+.+++|||||++++..+++.+++.+++++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~v--- 77 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFL--- 77 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEE---
Confidence 4799999999999999999999999988888998866543 4566789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++++....|...+.+.....++|+++++||.|+.
T Consensus 78 --------------------------------------lv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 78 --------------------------------------LVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 999999999999999998888765445689999999999996
Q ss_pred Ch-----hhHHHHHHHhC-CcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----LDEKELIDRIM-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i 210 (329)
+. .+..+++++++ ++++++||+++.+.+++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 120 DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred ccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 53 34566778888 899999999976666666554
No 66
>KOG0095|consensus
Probab=99.93 E-value=9.6e-26 Score=195.91 Aligned_cols=150 Identities=22% Similarity=0.353 Sum_probs=131.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
--+||+++|..|||||+|+++|+.+-|++....|+|+++. +++++.++++||||+|||+|++..++|++.|+++|
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali- 84 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI- 84 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE-
Confidence 3589999999999999999999999999999999998875 46889999999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++.+.+|+-+.+|+.++-+.. ..++-.++||||+|
T Consensus 85 ----------------------------------------lvydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d 123 (213)
T KOG0095|consen 85 ----------------------------------------LVYDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKID 123 (213)
T ss_pred ----------------------------------------EEEecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccc
Confidence 9999999999999999999996653 45677799999999
Q ss_pred CCChhh-----HHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNALD-----EKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~~e-----~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+..+ ++++++....-|+||||+...+.+.++..+
T Consensus 124 ~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~ 164 (213)
T KOG0095|consen 124 LADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDL 164 (213)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHH
Confidence 988733 567777777789999999966666666444
No 67
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.93 E-value=4.8e-25 Score=187.24 Aligned_cols=149 Identities=31% Similarity=0.595 Sum_probs=124.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQF-SQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYI 100 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~-~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~ 100 (329)
+|+++|++|||||||++++.++.+ ...+.||+|.....+..+++.+.+|||||+++++.++..+++++|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii------- 73 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGII------- 73 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEE-------
Confidence 589999999999999999998763 567789999877777778899999999999999999999999999999
Q ss_pred ehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc--CCCCcEEEEEEcCCCCCh
Q psy2970 101 VSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ--LIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~--~~~iPIiLVgNK~Dl~~~ 178 (329)
+|+|.+++.+++....++..+.+... ..++|+++|+||+|+.++
T Consensus 74 ----------------------------------~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 74 ----------------------------------FVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred ----------------------------------EEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 99999999999999888888876432 257999999999999875
Q ss_pred hhHHHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 179 LDEKELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 179 ~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
...+++.+.++ .+++++||+++.+.+++++.+.
T Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 120 LTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred CCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 44444443332 3489999999888888876653
No 68
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.93 E-value=5e-25 Score=190.28 Aligned_cols=145 Identities=19% Similarity=0.279 Sum_probs=123.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeeccee
Q psy2970 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLY 99 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~ 99 (329)
|+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||++.+..++..+++++|+++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i------ 74 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFL------ 74 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEE------
Confidence 5899999999999999999999988888988876643 4566788999999999999999999999999999
Q ss_pred eehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCCCCCh
Q psy2970 100 IVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~Dl~~~ 178 (329)
+|||++++++|+++.. |+..+.+. .+++|++|||||+|+...
T Consensus 75 -----------------------------------lv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~ 117 (174)
T smart00174 75 -----------------------------------ICFSVDSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLRED 117 (174)
T ss_pred -----------------------------------EEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhC
Confidence 9999999999999964 77777553 358999999999999642
Q ss_pred -----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 179 -----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 179 -----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
.++++++++++. +++|+||+++.++++++..+
T Consensus 118 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l 167 (174)
T smart00174 118 KSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEA 167 (174)
T ss_pred hhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHH
Confidence 346678999986 89999999977777777654
No 69
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.93 E-value=7.2e-25 Score=187.00 Aligned_cols=149 Identities=23% Similarity=0.390 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++.+...+.+|.+..+. .+++..+.+++||+||++++..++..+++.+|+++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i--- 77 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGAL--- 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEE---
Confidence 58999999999999999999999988888888886654 24566789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++..|+.++... ..+++|++||+||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 78 --------------------------------------LVYDITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLA 118 (161)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcc
Confidence 999999999999999998887543 24689999999999996
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .++..+++..+++++++||++..++++++..+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 119 DQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred hhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 53 457788899999999999999888888776553
No 70
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=5.2e-25 Score=198.42 Aligned_cols=146 Identities=16% Similarity=0.220 Sum_probs=118.1
Q ss_pred ceEEEEEcCCCCCHHHHHH-HHHcC-----CCCCCCCCceee--eEE-----------EeeCceEEEEEEecCCCccccc
Q psy2970 20 EMELTLVGLQCSGKTTFVN-VIASG-----QFSQDMIPTVGF--NMR-----------KITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin-~l~~~-----~~~~~~~pTig~--~~~-----------~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
.+||+++|++|||||||+. ++.++ .+...+.||++. .+. .++++.+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999996 55544 345678899962 221 3567789999999999985 2
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCC
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKP 159 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~ 159 (329)
+...+++++|+++ +|||+++++||+++. .|+.++...
T Consensus 80 ~~~~~~~~ad~ii-----------------------------------------lv~d~t~~~Sf~~~~~~w~~~i~~~- 117 (195)
T cd01873 80 DRRFAYGRSDVVL-----------------------------------------LCFSIASPNSLRNVKTMWYPEIRHF- 117 (195)
T ss_pred hhcccCCCCCEEE-----------------------------------------EEEECCChhHHHHHHHHHHHHHHHh-
Confidence 4566899999999 999999999999997 477776543
Q ss_pred cCCCCcEEEEEEcCCCCC------------------------hhhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 160 QLIGIPILVLGNKRDLPN------------------------ALDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~------------------------~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
..++|++|||||+|+.+ ..++++++++++++|+||||+++.+.+++++.+
T Consensus 118 -~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~ 191 (195)
T cd01873 118 -CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNA 191 (195)
T ss_pred -CCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHH
Confidence 25789999999999863 257899999999999999999977777776554
No 71
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=9.3e-25 Score=187.68 Aligned_cols=151 Identities=23% Similarity=0.337 Sum_probs=128.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--Ee--eCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i--~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
+.+||+++|++|||||||++++..+.+...+.+|.+.++. .+ ++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l- 80 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI- 80 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE-
Confidence 4689999999999999999999999988878888876543 33 455578999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++.+|+.+..|+.++.... ..++|+++|+||+|
T Consensus 81 ----------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D 119 (165)
T cd01864 81 ----------------------------------------IAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCD 119 (165)
T ss_pred ----------------------------------------EEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcc
Confidence 9999999999999999999886642 36799999999999
Q ss_pred CCCh-----hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .++.+++++++. .++|+||+++.+.++++..+.
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~ 162 (165)
T cd01864 120 LEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMA 162 (165)
T ss_pred cccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHH
Confidence 9754 456788888886 689999999877777776553
No 72
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.93 E-value=6.5e-25 Score=190.95 Aligned_cols=152 Identities=27% Similarity=0.547 Sum_probs=127.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
..+++||+++|++|||||||++++.++.+ ..+.||+|.....+..+.+.+.+|||||++.++.++..+++++|+++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i--- 86 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALI--- 86 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE---
Confidence 45679999999999999999999998865 46778988777776666889999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++.+|++...++.+++......++|++||+||+|+.
T Consensus 87 --------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 87 --------------------------------------WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 999999999999999999888765445789999999999997
Q ss_pred ChhhHHHHHHH--------hCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NALDEKELIDR--------IMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~~e~~~l~~~--------~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+....+++.+. .+++++++||+++.+.+++++.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 129 GALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred cCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 65333333322 24689999999988888877654
No 73
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.93 E-value=8.3e-25 Score=189.90 Aligned_cols=144 Identities=18% Similarity=0.319 Sum_probs=118.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
+||+++|++|||||||++++..+.|.+.+.|+.+.... .++++.+.+.+|||+|++. ..+++.+|+++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~i----- 70 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVI----- 70 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEE-----
Confidence 58999999999999999999999887766665443222 2456678899999999975 34678899999
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC-
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN- 177 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~- 177 (329)
+|||+++++||+++..|+.++.......++|+++||||.|+..
T Consensus 71 ------------------------------------lv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~ 114 (158)
T cd04103 71 ------------------------------------FVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISES 114 (158)
T ss_pred ------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc
Confidence 9999999999999999999998765557799999999999842
Q ss_pred -h-----hhHHHHHHHh-CCcEEEEeccchHHHHHHhhhh
Q psy2970 178 -A-----LDEKELIDRI-MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 178 -~-----~e~~~l~~~~-~~~~~etSAk~~~~~~~~l~~i 210 (329)
. .++++++++. +++|+||||+++.+.++.+..+
T Consensus 115 ~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 115 NPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 1 4567788877 4899999999977777777654
No 74
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.93 E-value=1.3e-24 Score=188.20 Aligned_cols=149 Identities=19% Similarity=0.293 Sum_probs=128.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
-+||+++|++|||||||++++.++++...+.+|.+.++. .+++....+.+|||||++++..+...+++.+|+++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il-- 81 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL-- 81 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE--
Confidence 489999999999999999999999988777888877653 24566789999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++++.+..|+.++.+.. .+++|++||+||.|+
T Consensus 82 ---------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl 121 (168)
T cd01866 82 ---------------------------------------LVYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDL 121 (168)
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECccc
Confidence 9999999999999999999886643 367999999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.+. .+++.++++.+++++|+||+...++++.+..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 122 ESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 742 45677888889999999999987777766544
No 75
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.93 E-value=8.1e-25 Score=190.23 Aligned_cols=147 Identities=27% Similarity=0.480 Sum_probs=124.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIV 101 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~ 101 (329)
||+++|++|||||||++++.++.+. .+.||++.++..++.+++.+++|||||++.++.++..+++++|+++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii-------- 71 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVV-------- 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEE--------
Confidence 6899999999999999999998775 4789999888878888899999999999999999999999999999
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChh--
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL-- 179 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~-- 179 (329)
+|+|.+++++|+++..|+.++++.....+.|++||+||+|+.+..
T Consensus 72 ---------------------------------~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 118 (169)
T cd04158 72 ---------------------------------FVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSV 118 (169)
T ss_pred ---------------------------------EEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCH
Confidence 999999999999999999999876555678999999999997653
Q ss_pred -hHHHHHHHhC------CcEEEEeccchHHHHHHhhhh
Q psy2970 180 -DEKELIDRIM------IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 180 -e~~~l~~~~~------~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+++++..+ ..++++||+++.++++.++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l 156 (169)
T cd04158 119 EEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWL 156 (169)
T ss_pred HHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHH
Confidence 3333332211 268899999977777776554
No 76
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=1e-24 Score=193.59 Aligned_cols=149 Identities=26% Similarity=0.410 Sum_probs=128.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+||+++|++|||||||++++.++.+. ..+.+|++.++.. +++..+.+.||||||++++...+..+++++|+++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i-- 78 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALL-- 78 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEE--
Confidence 58999999999999999999999885 4678888876643 4566789999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+++..|+..+.+.. ..++|+++||||+|+
T Consensus 79 ---------------------------------------~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl 118 (191)
T cd04112 79 ---------------------------------------LLYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADM 118 (191)
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccc
Confidence 9999999999999999998887642 347899999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
... .+++.+++.++.+|+|+||+++.+.+.++..+.
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 119 SGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred hhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 632 567788899999999999999877888776654
No 77
>KOG0086|consensus
Probab=99.92 E-value=2e-25 Score=194.50 Aligned_cols=149 Identities=25% Similarity=0.404 Sum_probs=133.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+|++++|+.|.|||+|+.+|..++|..+...|+|+++.. +.++.++++||||+|||+|++..+.|+++|.+.+
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl--- 86 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL--- 86 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE---
Confidence 899999999999999999999999998889999998863 5688899999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+..+... ..+++.|+++|||.||.
T Consensus 87 --------------------------------------LVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~ 127 (214)
T KOG0086|consen 87 --------------------------------------LVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLD 127 (214)
T ss_pred --------------------------------------EEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcC
Confidence 999999999999999999988654 35788999999999998
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccc-hHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLL-IRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~-~~~~~~~l~~i~ 211 (329)
++ .++.+++++..+.+.||||++ .|+.|.|+.-..
T Consensus 128 ~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 128 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred hhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHH
Confidence 86 568889999999999999999 555566665444
No 78
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.92 E-value=1.9e-24 Score=184.55 Aligned_cols=148 Identities=20% Similarity=0.339 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCceeeeEEE----e-eCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG--QFSQDMIPTVGFNMRK----I-TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~--~~~~~~~pTig~~~~~----i-~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
+||+++|++|||||||++++..+ .+.+.+.||+|.++.. + ++..+.+.+|||||++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6778889999877642 2 356789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+..|+.++.... .++|+++|+||+
T Consensus 81 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~ 117 (164)
T cd04101 81 -----------------------------------------LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKM 117 (164)
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECc
Confidence 9999999999999999998876642 579999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .+++.+++.++++++++||+++..++++++.+.
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 118 DLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA 160 (164)
T ss_pred ccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence 99654 234567778889999999999888888776553
No 79
>KOG0091|consensus
Probab=99.92 E-value=3e-25 Score=195.04 Aligned_cols=152 Identities=22% Similarity=0.345 Sum_probs=133.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----e-eCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----I-TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i-~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
.-+++++++|++-||||+|++.|+.++|.+-..||+|+++.. + ++..+++++|||+|||+|++..++|+++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 457899999999999999999999999998889999998753 2 57789999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc-CCCCcEEEEEE
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ-LIGIPILVLGN 171 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~-~~~iPIiLVgN 171 (329)
+ +|||++|++||+.+..|+++..-... ..++-++|||.
T Consensus 86 l-----------------------------------------lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGh 124 (213)
T KOG0091|consen 86 L-----------------------------------------LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGH 124 (213)
T ss_pred E-----------------------------------------EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEecc
Confidence 9 99999999999999999999876655 34445688999
Q ss_pred cCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 172 KRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 172 K~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+|+... +|++.+++..|+.|+||||+++.+.++.++.+
T Consensus 125 KsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~ml 168 (213)
T KOG0091|consen 125 KSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDML 168 (213)
T ss_pred ccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHH
Confidence 9999865 78999999999999999999966556555544
No 80
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.92 E-value=2.4e-24 Score=190.20 Aligned_cols=148 Identities=22% Similarity=0.341 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQ-DMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~-~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+||+++|++|||||||++++..+.+.. .+.+|++..+. .+++..+.+.+|||+|++++..++..+++++|+++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ii-- 78 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAI-- 78 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEE--
Confidence 589999999999999999999999874 68899987653 24666788999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+++..|+..+... ..++|+++|+||+|+
T Consensus 79 ---------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl 117 (193)
T cd04118 79 ---------------------------------------VCYDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDL 117 (193)
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccc
Confidence 999999999999999998888654 347999999999998
Q ss_pred CCh---------hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA---------LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~---------~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+. .++++++++++.+++++||+++..++.+++.+.
T Consensus 118 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 162 (193)
T cd04118 118 IEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVA 162 (193)
T ss_pred cccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 542 246677888899999999999777777776654
No 81
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.92 E-value=2.6e-24 Score=182.91 Aligned_cols=149 Identities=20% Similarity=0.367 Sum_probs=127.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++++...+.|+.+.++.. +++..+.+++|||||+++++.++..+++++|+++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii--- 77 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAV--- 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE---
Confidence 489999999999999999999999887788888876543 3455678999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+..+..... .++|+++++||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~ 118 (161)
T cd01861 78 --------------------------------------VVYDITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLS 118 (161)
T ss_pred --------------------------------------EEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhcc
Confidence 99999999999999999998866432 379999999999994
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .+...+++..+++++++||++..+.++++..+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 119 DKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA 158 (161)
T ss_pred ccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 32 456778888899999999999888888876653
No 82
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.92 E-value=3.1e-24 Score=182.79 Aligned_cols=149 Identities=21% Similarity=0.362 Sum_probs=129.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++.+...+.||.+.++.. ++...+.+.+|||||++.+...+..+++.+|+++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i--- 77 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVI--- 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEE---
Confidence 589999999999999999999998877778888876542 4556689999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||.+++++|+.+..|+..+.+.....++|+++|+||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 78 --------------------------------------LVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred --------------------------------------EEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 999999999999999998888776556789999999999997
Q ss_pred Ch----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.. .+..+++++.+++++++||+++.+.+++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~ 157 (161)
T cd01863 120 NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEEL 157 (161)
T ss_pred ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence 32 56778888889999999999988888877654
No 83
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.92 E-value=1.6e-24 Score=186.28 Aligned_cols=148 Identities=19% Similarity=0.260 Sum_probs=121.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCcc-ccchHHHHhhccceeEeecc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPR-FRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~-~~~~~~~~~~~ad~iI~~~~ 97 (329)
||+++|++|||||||++++..+.+...+.||++..+. .++++.+.+++|||||+++ .......+++.+|+++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i---- 76 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFV---- 76 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEE----
Confidence 6899999999999999999998887778888754443 3567778999999999986 3456778899999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc-CCCCcEEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ-LIGIPILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~-~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+..+.+... ..++|+++||||+|+.
T Consensus 77 -------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 77 -------------------------------------LVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 99999999999999998887765432 4579999999999985
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccch-HHHHHHhhhh
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLI-RWCESFLHHF 210 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~-~~~~~~l~~i 210 (329)
+. .+++++++.++.+|+|+||+++ ++.+++++.+
T Consensus 120 ~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 120 HYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred HhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 43 4567889999999999999996 4666666554
No 84
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.92 E-value=3.5e-24 Score=182.48 Aligned_cols=150 Identities=24% Similarity=0.405 Sum_probs=129.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
++||+++|++|||||||++++.++++...+.||.+..+. .++...+.+.+||+||++++...+..+++++|+++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i-- 78 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAI-- 78 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEE--
Confidence 489999999999999999999999988777888886543 35667789999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|+|.+++++|+....|+..+..... .++|+++++||+|+
T Consensus 79 ---------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~ 118 (163)
T cd01860 79 ---------------------------------------VVYDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADL 118 (163)
T ss_pred ---------------------------------------EEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccc
Confidence 99999999999999999998876543 67999999999998
Q ss_pred CC-----hhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PN-----ALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~-----~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.. ..+..+++++.+.+++++||+++.+.+++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 119 ESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred cccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 73 2456778888899999999999877787776543
No 85
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.92 E-value=2e-24 Score=187.81 Aligned_cols=147 Identities=16% Similarity=0.260 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||++++.++.+...+.||....+. .+++..+.+++|||||++++..++..+++++|+++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i---- 76 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFL---- 76 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEE----
Confidence 58999999999999999999999998888888755443 24566789999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+. .|+..+... ..++|+++||||+|+.
T Consensus 77 -------------------------------------~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~ 117 (173)
T cd04130 77 -------------------------------------LCFSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLR 117 (173)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhc
Confidence 999999999999986 577666543 3579999999999986
Q ss_pred Ch-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
.. .++.+++++.+. +++|+||+++.+.+++++.+
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 118 TDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred cChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHH
Confidence 32 357788888887 89999999987788777554
No 86
>PLN03110 Rab GTPase; Provisional
Probab=99.92 E-value=3.1e-24 Score=195.39 Aligned_cols=151 Identities=22% Similarity=0.364 Sum_probs=130.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..+||+++|++|||||||+++|.++.+...+.||++.++.. +++..+.+++|||+|++++..++..+++.+++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i- 89 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL- 89 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE-
Confidence 45899999999999999999999999987888999987642 4566789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+..+.+.. ..++|+++||||+|
T Consensus 90 ----------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D 128 (216)
T PLN03110 90 ----------------------------------------LVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSD 128 (216)
T ss_pred ----------------------------------------EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChh
Confidence 9999999999999999998886642 35799999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. +++..+++.++++++++||++..+.+++++.+.
T Consensus 129 l~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 129 LNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 8643 467788888999999999999777777666553
No 87
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=2.6e-24 Score=187.81 Aligned_cols=150 Identities=13% Similarity=0.177 Sum_probs=127.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
++-+||+++|++|||||||++++.++.+. ..+.||++..+. .+++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 45689999999999999999999999998 889999987653 2456668899999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++++|+.+..|+..+.. ..++|+++|+||
T Consensus 82 l-----------------------------------------lv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK 117 (169)
T cd01892 82 C-----------------------------------------LVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAK 117 (169)
T ss_pred E-----------------------------------------EEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEc
Confidence 9 99999999999999888876532 247999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCc-EEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMID-FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~-~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .+.+++++.++.+ ++++||+++.+++++++.+.
T Consensus 118 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~ 162 (169)
T cd01892 118 ADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLA 162 (169)
T ss_pred ccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHH
Confidence 999653 3567888998874 79999999888888776654
No 88
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.92 E-value=2.4e-24 Score=184.20 Aligned_cols=148 Identities=34% Similarity=0.644 Sum_probs=123.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIV 101 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~ 101 (329)
||+++|++|||||||++++..+.+. .+.||++.++..++.+..++++|||||+++++.++..+++.+++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii-------- 71 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAII-------- 71 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEE--------
Confidence 6899999999999999999888775 4678988888777778899999999999999999999999999999
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhH
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE 181 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~ 181 (329)
+|+|++++.++.....++..+++.....++|+++|+||+|+.++...
T Consensus 72 ---------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~ 118 (158)
T cd04151 72 ---------------------------------YVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE 118 (158)
T ss_pred ---------------------------------EEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH
Confidence 99999999888887787777766544567999999999999765434
Q ss_pred HHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 182 KELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 182 ~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++.+.++ .+++++||+++.+.+++++.+.
T Consensus 119 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 119 AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence 44444443 3599999999888888876653
No 89
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.92 E-value=4.2e-24 Score=181.12 Aligned_cols=149 Identities=19% Similarity=0.305 Sum_probs=129.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||++++..+.+...+.+|++..+.+ ++++.+.+.+|||||++.+...+..+++.+++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i---- 76 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFL---- 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEE----
Confidence 589999999999999999999999888888888765543 4567789999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|+|++++++|++...|+..+.......++|+++|+||+|+.+
T Consensus 77 -------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 77 -------------------------------------LVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 9999999999999999999888765556899999999999976
Q ss_pred h-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 178 A-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 178 ~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
. .+...++++++++++++||+++.++++++..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (164)
T cd04139 120 KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDL 157 (164)
T ss_pred ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHH
Confidence 2 44567888889999999999988888877655
No 90
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.92 E-value=2.3e-24 Score=195.39 Aligned_cols=143 Identities=22% Similarity=0.358 Sum_probs=123.9
Q ss_pred EcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeee
Q psy2970 26 VGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIV 101 (329)
Q Consensus 26 lG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~ 101 (329)
+|++|||||||++++..+.+...+.||+|.++.. ++.+.+.+.||||+|+++++.++..+++++++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~i-------- 72 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAI-------- 72 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEE--------
Confidence 6999999999999999999988889999987754 3567899999999999999999999999999999
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh---
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--- 178 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~--- 178 (329)
+|||++++++|+.+..|+.++.+. ..++|++|||||+|+...
T Consensus 73 ---------------------------------lV~D~t~~~S~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~ 117 (200)
T smart00176 73 ---------------------------------IMFDVTARVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKDRKVK 117 (200)
T ss_pred ---------------------------------EEEECCChHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccCC
Confidence 999999999999999999988765 257999999999998643
Q ss_pred hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 179 LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 179 ~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+...+++..++.|+||||+++.+.++.+..+.
T Consensus 118 ~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~ 150 (200)
T smart00176 118 AKSITFHRKKNLQYYDISAKSNYNFEKPFLWLA 150 (200)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 234467788899999999999777777665553
No 91
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.92 E-value=2.9e-24 Score=185.46 Aligned_cols=147 Identities=16% Similarity=0.228 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||++++..+++...+.||++..+. .+++..+.+.+|||||++.+...+..+++++|+++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i---- 76 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL---- 76 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEE----
Confidence 58999999999999999999999998788888875543 24566778999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++.. |+..+... ..++|+++||||+|+.
T Consensus 77 -------------------------------------lv~~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~ 117 (174)
T cd04135 77 -------------------------------------ICFSVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLR 117 (174)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhh
Confidence 9999999999999874 55555433 4689999999999985
Q ss_pred Ch-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
+. .+++.++++++. +|+|+||+++.+++++++.+
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~ 169 (174)
T cd04135 118 DDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEA 169 (174)
T ss_pred cChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHH
Confidence 42 346678888886 79999999988888887655
No 92
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.92 E-value=4.8e-24 Score=181.10 Aligned_cols=149 Identities=24% Similarity=0.452 Sum_probs=128.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++.+...+.+|++.++.. ++++.+.+.+||+||++++...+..+++++|+++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i--- 77 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGAL--- 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEE---
Confidence 589999999999999999999999887888888876543 3455578999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++.+++.+..|+.++.... ..++|+++|+||+|+.
T Consensus 78 --------------------------------------lv~d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~ 118 (164)
T smart00175 78 --------------------------------------LVYDITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLE 118 (164)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcc
Confidence 9999999999999999988876643 2589999999999987
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. ..+++++++.+++++|+||++....+++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 119 DQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA 158 (164)
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 52 457778888899999999999877787776654
No 93
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.92 E-value=6.4e-24 Score=186.76 Aligned_cols=163 Identities=29% Similarity=0.592 Sum_probs=132.2
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHH
Q psy2970 5 LNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWER 84 (329)
Q Consensus 5 ~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~ 84 (329)
+..+++-+ .+.+++.||+++|++|||||||++++.++.+. .+.||.+.....+..++..+.+||+||++.++..+..
T Consensus 6 ~~~~~~~~--~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~ 82 (190)
T cd00879 6 FYNVLSSL--GLYNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKD 82 (190)
T ss_pred HHHHHHHh--hcccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 34444433 33577899999999999999999999998874 5778888777777777789999999999999999999
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++++++++ +|+|++++++++....++.++++.....+.
T Consensus 83 ~~~~ad~ii-----------------------------------------lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~ 121 (190)
T cd00879 83 YFPEVDGIV-----------------------------------------FLVDAADPERFQESKEELDSLLSDEELANV 121 (190)
T ss_pred HhccCCEEE-----------------------------------------EEEECCcHHHHHHHHHHHHHHHcCccccCC
Confidence 999999999 999999999999999999998876555779
Q ss_pred cEEEEEEcCCCCChhhHHHHHHHhC-------------------CcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLPNALDEKELIDRIM-------------------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~e~~~l~~~~~-------------------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++++||+|+......+++.+.++ ..+++|||+++.+.++.+..+.
T Consensus 122 pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~ 187 (190)
T cd00879 122 PFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLS 187 (190)
T ss_pred CEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHH
Confidence 9999999999976544444443332 3589999999777777766543
No 94
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.92 E-value=3.7e-24 Score=192.97 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccch--------HHHHhhc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSM--------WERYCRG 88 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~--------~~~~~~~ 88 (329)
+||+++|++|||||||++++.++++...+.||++.++. .++++.+.+++|||||.+.+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998888999885542 24566689999999997654221 2344678
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC--cCCCCcE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP--QLIGIPI 166 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~--~~~~iPI 166 (329)
+|+++ +|||++++++|+.+..|+.++.+.. ...++|+
T Consensus 81 ad~ii-----------------------------------------lv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~pi 119 (198)
T cd04142 81 SRAFI-----------------------------------------LVYDICSPDSFHYVKLLRQQILETRPAGNKEPPI 119 (198)
T ss_pred CCEEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCE
Confidence 88888 9999999999999999998887653 2467999
Q ss_pred EEEEEcCCCCCh-----hhHHHHHH-HhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNA-----LDEKELID-RIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~-----~e~~~l~~-~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|||||+|+.+. .+++++++ ..+++|+||||+++.+++++++.+.
T Consensus 120 iivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~ 170 (198)
T cd04142 120 VVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELL 170 (198)
T ss_pred EEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 999999999653 33455543 5689999999999777777776553
No 95
>KOG0395|consensus
Probab=99.92 E-value=1.7e-24 Score=196.34 Aligned_cols=150 Identities=21% Similarity=0.328 Sum_probs=135.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.++||+++|.+|||||+|+.+|..+.|...|.||++..+++ ++++.+.+.|+||+|++.+..+.+.+++.+++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~-- 79 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFL-- 79 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEE--
Confidence 57899999999999999999999999999999999987775 6788899999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+||+++|+.||+.+..++..+.+.....++|+++||||+|+
T Consensus 80 ---------------------------------------lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl 120 (196)
T KOG0395|consen 80 ---------------------------------------LVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDL 120 (196)
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccc
Confidence 99999999999999999999977666677999999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHH 209 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~ 209 (329)
... +++++++..++++|+|+||+.....++.+..
T Consensus 121 ~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~ 159 (196)
T KOG0395|consen 121 ERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYE 159 (196)
T ss_pred hhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHH
Confidence 873 6788999999999999999995444444433
No 96
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=1.1e-23 Score=186.48 Aligned_cols=153 Identities=29% Similarity=0.558 Sum_probs=129.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 16 ~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+++++||+++|.+|||||||++++.++.+. .+.||.+.....+..+++++.+|||||++.++.++..+++++|+++
T Consensus 13 ~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii-- 89 (184)
T smart00178 13 LWNKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIV-- 89 (184)
T ss_pred cccccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE--
Confidence 3578899999999999999999999998775 4567777776666667899999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|+|++++++++....++.++++.....++|+++|+||+|+
T Consensus 90 ---------------------------------------~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl 130 (184)
T smart00178 90 ---------------------------------------YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDA 130 (184)
T ss_pred ---------------------------------------EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccc
Confidence 99999999999999999998887655578999999999999
Q ss_pred CChhhHHHHHHHhCC---------------cEEEEeccchHHHHHHhhhh
Q psy2970 176 PNALDEKELIDRIMI---------------DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~~e~~~l~~~~~~---------------~~~etSAk~~~~~~~~l~~i 210 (329)
+.....+++++.+++ .++++||+++.+.++.++-+
T Consensus 131 ~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl 180 (184)
T smart00178 131 PYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWL 180 (184)
T ss_pred cCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHH
Confidence 876566666666642 38999999987777766544
No 97
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.91 E-value=1.2e-23 Score=180.39 Aligned_cols=150 Identities=23% Similarity=0.376 Sum_probs=126.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++.+.+.+.+|++.++. .+.+..+.+.+||+||++.+..++..+++++|+++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i--- 77 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCV--- 77 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEE---
Confidence 58999999999999999999999988788888886653 24556788999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc---CCCCcEEEEEEcC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ---LIGIPILVLGNKR 173 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~---~~~iPIiLVgNK~ 173 (329)
++||+.++.++++...|..++..... ..++|+++|+||+
T Consensus 78 --------------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 119 (172)
T cd01862 78 --------------------------------------LVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKI 119 (172)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECc
Confidence 99999999999999888877665432 3479999999999
Q ss_pred CCCC-----hhhHHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPN-----ALDEKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~-----~~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.. .++.+++++..+ .+++++||+++.+.+.+++.+.
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 163 (172)
T cd01862 120 DLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIA 163 (172)
T ss_pred ccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHH
Confidence 9973 245667778887 7999999999877777776553
No 98
>PLN03108 Rab family protein; Provisional
Probab=99.91 E-value=9.7e-24 Score=191.14 Aligned_cols=150 Identities=18% Similarity=0.291 Sum_probs=128.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..+||+++|++|||||||++++.++++...+.||++.++. .+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v- 83 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL- 83 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE-
Confidence 4689999999999999999999999988788889887653 34566788999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+.++.... ..++|+++|+||+|
T Consensus 84 ----------------------------------------lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~D 122 (210)
T PLN03108 84 ----------------------------------------LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCD 122 (210)
T ss_pred ----------------------------------------EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcc
Confidence 9999999999999999988876542 35799999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. .++++++++++++++|+||++...+++.+..+
T Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred CccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9753 56788999999999999999966666655433
No 99
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.91 E-value=1.2e-23 Score=177.59 Aligned_cols=149 Identities=19% Similarity=0.335 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++.+.+.+.+|++..+.. ..+..+.+.+||+||++.+..++..+++++|+++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i--- 77 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAI--- 77 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEE---
Confidence 589999999999999999999998877667777554432 3456678999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++++.+..|+.++..... .++|+++|+||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~ 118 (162)
T cd04123 78 --------------------------------------LVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLE 118 (162)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccc
Confidence 99999999999999999888866533 379999999999997
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.. .+.+++++.++.+++++||++....+++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 119 RQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 53 345678888899999999999888888776553
No 100
>PLN03118 Rab family protein; Provisional
Probab=99.91 E-value=1.7e-23 Score=188.73 Aligned_cols=153 Identities=18% Similarity=0.325 Sum_probs=126.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
++..+||+++|++|||||||++++.++.+. .+.||++.++. . +++..+.+.+|||||++++..++..+++++|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 456799999999999999999999998874 56788887653 2 355678999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh-CCcCCCCcEEEEEE
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE-KPQLIGIPILVLGN 171 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~-~~~~~~iPIiLVgN 171 (329)
+ +|||++++++|+++..++...+. .....+.|+++|+|
T Consensus 90 v-----------------------------------------lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~N 128 (211)
T PLN03118 90 I-----------------------------------------LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGN 128 (211)
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 9 99999999999999875544443 22235689999999
Q ss_pred cCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 172 KRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 172 K~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+|+... .+..+++++.+++|+|+||++..++++++..+.
T Consensus 129 K~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 173 (211)
T PLN03118 129 KVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELA 173 (211)
T ss_pred CccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999643 456678888899999999999777777776553
No 101
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.91 E-value=1.8e-23 Score=190.12 Aligned_cols=138 Identities=20% Similarity=0.239 Sum_probs=119.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--e-----eCceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--I-----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i-----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
+||+++|++|||||||++++..+.|...+.||+|.++. . + +++.+.++||||+|+++++.++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999998889999996553 2 2 2457899999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC------------
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP------------ 159 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~------------ 159 (329)
+| +|||+++++||+++..|+.++.+..
T Consensus 81 iI-----------------------------------------lVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~ 119 (202)
T cd04102 81 II-----------------------------------------LVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGD 119 (202)
T ss_pred EE-----------------------------------------EEEECcChHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 99 9999999999999999999987631
Q ss_pred ------cCCCCcEEEEEEcCCCCCh---------hhHHHHHHHhCCcEEEEeccc
Q psy2970 160 ------QLIGIPILVLGNKRDLPNA---------LDEKELIDRIMIDFWITLTLL 199 (329)
Q Consensus 160 ------~~~~iPIiLVgNK~Dl~~~---------~e~~~l~~~~~~~~~etSAk~ 199 (329)
...++|++|||||+|+.++ .....++++++++.++.+++.
T Consensus 120 ~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~ 174 (202)
T cd04102 120 YDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTN 174 (202)
T ss_pred ccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCC
Confidence 1247999999999999654 235578899999999998886
No 102
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.91 E-value=1.1e-23 Score=179.26 Aligned_cols=148 Identities=29% Similarity=0.618 Sum_probs=122.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEee-CceEEEEEEecCCCccccchHHHHhhccceeEeecceee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT-KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYI 100 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~-~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~ 100 (329)
+|+++|++|||||||++++.++.+. .+.||++..+..+. .+.+.+.+|||||++.+...+..+++++|+++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv------- 72 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLV------- 72 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEE-------
Confidence 5899999999999999999999886 34788887776554 35689999999999999999999999999999
Q ss_pred ehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh
Q psy2970 101 VSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180 (329)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e 180 (329)
+|+|.+++.+++....++.++++.....++|+++|+||+|+.....
T Consensus 73 ----------------------------------~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 118 (160)
T cd04156 73 ----------------------------------YVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT 118 (160)
T ss_pred ----------------------------------EEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC
Confidence 9999999999999999999988765556899999999999976433
Q ss_pred HHHHHHHh---------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 181 EKELIDRI---------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 181 ~~~l~~~~---------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+++.+.+ +.+++++||+++.+.+++++.+.
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 119 AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHh
Confidence 33443332 34689999999888888876653
No 103
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.91 E-value=1.4e-23 Score=178.55 Aligned_cols=148 Identities=33% Similarity=0.660 Sum_probs=127.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIV 101 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~ 101 (329)
||+++|.+|||||||++++.++++ ..+.+|++..+..+..++..+.+||+||++.+...+..+++.+|+++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i-------- 71 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGII-------- 71 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEE--------
Confidence 689999999999999999999885 45788999888888878899999999999999999999999999999
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhH
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE 181 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~ 181 (329)
+|||++++++++....++..+.......+.|+++|+||+|+......
T Consensus 72 ---------------------------------~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 118 (158)
T cd00878 72 ---------------------------------FVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSV 118 (158)
T ss_pred ---------------------------------EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCH
Confidence 99999999999999999998887655678999999999999876544
Q ss_pred HHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 182 KELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 182 ~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+++.++++ .+++++||+++.+.+++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 119 SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence 44444433 4699999999888888877653
No 104
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.91 E-value=1.1e-23 Score=181.94 Aligned_cols=149 Identities=21% Similarity=0.312 Sum_probs=123.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+.||+++|++|||||||++++.++.+...+.||++..+. .++++.+.+.+|||+|++++...+..+++++|+++
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i--- 77 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL--- 77 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEE---
Confidence 368999999999999999999999998888999886653 24567788999999999999888888889999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+.+.. |+..+... ..++|+++|+||+|+
T Consensus 78 --------------------------------------~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl 117 (175)
T cd01870 78 --------------------------------------MCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDL 117 (175)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhc
Confidence 9999999999999865 65555443 357899999999998
Q ss_pred CCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+. .++++++++++. ++++|||+++.+.+++++.+.
T Consensus 118 ~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~ 171 (175)
T cd01870 118 RNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMAT 171 (175)
T ss_pred ccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHH
Confidence 642 345667777774 799999999888888776553
No 105
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.91 E-value=1.4e-23 Score=175.13 Aligned_cols=149 Identities=66% Similarity=1.040 Sum_probs=127.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIV 101 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~ 101 (329)
.|+++|++|||||||++++.+.++...+.||++.++..++.+.+.+.+||+||++.++..+..+++.+|+++
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii-------- 72 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIV-------- 72 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEE--------
Confidence 489999999999999999999999888999999988887777799999999999999999999999999999
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhH
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE 181 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~ 181 (329)
+|+|++++.++.....++.++.......++|+++|+||+|+.+..+.
T Consensus 73 ---------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 119 (159)
T cd04159 73 ---------------------------------YVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV 119 (159)
T ss_pred ---------------------------------EEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH
Confidence 99999999999999889988877655578999999999999776444
Q ss_pred HHHHHHh--------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 182 KELIDRI--------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 182 ~~l~~~~--------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+++.+.+ ..+++++||+++...+++++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 120 DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHh
Confidence 4443333 25789999999888888776653
No 106
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.91 E-value=1.3e-23 Score=182.73 Aligned_cols=137 Identities=31% Similarity=0.566 Sum_probs=117.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIV 101 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~ 101 (329)
+|+++|++|||||||++++.++ +...+.||+|.....++.+++.+++||+||++.++.++..+++++++++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii-------- 71 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLV-------- 71 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEE--------
Confidence 4899999999999999999977 6667889999887778888899999999999999999999999999999
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhH
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE 181 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~ 181 (329)
+|||.+++++++++..|+..+.+.....++|+++|+||+|+++....
T Consensus 72 ---------------------------------~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~ 118 (167)
T cd04161 72 ---------------------------------FVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG 118 (167)
T ss_pred ---------------------------------EEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH
Confidence 99999999999999999999987655568999999999999876432
Q ss_pred H---------HHHHHhC--CcEEEEeccch
Q psy2970 182 K---------ELIDRIM--IDFWITLTLLI 200 (329)
Q Consensus 182 ~---------~l~~~~~--~~~~etSAk~~ 200 (329)
. +++++.+ +.+++|||+++
T Consensus 119 ~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 119 ADVIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred HHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence 2 2332222 45778999995
No 107
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.91 E-value=1.2e-23 Score=196.55 Aligned_cols=150 Identities=16% Similarity=0.238 Sum_probs=123.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||++++.++++...+.||++..+. .++++.+.++||||+|++.+..++..++..+|+++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iI---- 76 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFI---- 76 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEE----
Confidence 58999999999999999999999998888899874332 34567789999999999999999888999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC--------cCCCCcEEEE
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP--------QLIGIPILVL 169 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~--------~~~~iPIiLV 169 (329)
+|||++++++|+++..|+.++.+.. ...++|++||
T Consensus 77 -------------------------------------lVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIiv 119 (247)
T cd04143 77 -------------------------------------LVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119 (247)
T ss_pred -------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEE
Confidence 9999999999999999999887542 2357999999
Q ss_pred EEcCCCCCh-----hhHHHHHHH-hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNA-----LDEKELIDR-IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~-----~e~~~l~~~-~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+... .+..++... .++.++++||+++.+++++++.+.
T Consensus 120 gNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~ 167 (247)
T cd04143 120 GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167 (247)
T ss_pred EECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999742 334444332 357899999999777777776654
No 108
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.91 E-value=1.7e-23 Score=184.82 Aligned_cols=151 Identities=32% Similarity=0.636 Sum_probs=121.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe-----eCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI-----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i-----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
+.+||+++|++|||||||++++..+.+.. +.||+|...... +...+.+.+|||||+++++.++..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 46899999999999999999999988764 468887665432 236789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++....++.++.......++|++||+||+
T Consensus 81 -----------------------------------------~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~ 119 (183)
T cd04152 81 -----------------------------------------FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQ 119 (183)
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECc
Confidence 999999999999998888888765445679999999999
Q ss_pred CCCChh---hHHHHHH--Hh----CCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNAL---DEKELID--RI----MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~~---e~~~l~~--~~----~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+.. +.+.+.. +. +.+++++||+++.+++++++.+.
T Consensus 120 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~ 166 (183)
T cd04152 120 DLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLY 166 (183)
T ss_pred CccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHH
Confidence 997542 2332221 11 24688999999888888776653
No 109
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.91 E-value=1.9e-23 Score=182.01 Aligned_cols=150 Identities=17% Similarity=0.307 Sum_probs=127.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
.||+++|++|||||||++++.++.+...+.||++..+.. .+...+.+.+|||||++++...+..++..+++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i---- 77 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYI---- 77 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEE----
Confidence 689999999999999999999998877778887654332 3445678899999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
++||+++..+++.+..++..+.+.....+.|+++|+||+|+..
T Consensus 78 -------------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 78 -------------------------------------LVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT 120 (180)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence 9999999999999999999998865557889999999999974
Q ss_pred h-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 178 A-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 178 ~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
. .+..+++++++.+++++||++....++++..+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 121 QRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 2 345677888899999999999777777776653
No 110
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.91 E-value=3.4e-23 Score=182.77 Aligned_cols=157 Identities=34% Similarity=0.680 Sum_probs=136.2
Q ss_pred HHHHhcCC-CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhc
Q psy2970 10 DWFKSLFW-KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRG 88 (329)
Q Consensus 10 ~~~~~~~~-~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ 88 (329)
+.+++++. +++.||+++|..||||||+++++..+++. .+.||+|.++..++.+++.+.+||++|+..++..|+.|+++
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~ 81 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQN 81 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTT
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeeeCcEEEEEEeccccccccccceeeccc
Confidence 44566654 88999999999999999999999987765 47899999999999999999999999999999999999999
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
++++| ||+|.+|++.+.+....+.++++.....++|++|
T Consensus 82 ~~~iI-----------------------------------------fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLI 120 (175)
T PF00025_consen 82 ADGII-----------------------------------------FVVDSSDPERLQEAKEELKELLNDPELKDIPILI 120 (175)
T ss_dssp ESEEE-----------------------------------------EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEE
T ss_pred cceeE-----------------------------------------EEEecccceeecccccchhhhcchhhcccceEEE
Confidence 99999 9999999999999999999999987778999999
Q ss_pred EEEcCCCCChhhHHHHHHHhC---------CcEEEEeccchHHHHHHhh
Q psy2970 169 LGNKRDLPNALDEKELIDRIM---------IDFWITLTLLIRWCESFLH 208 (329)
Q Consensus 169 VgNK~Dl~~~~e~~~l~~~~~---------~~~~etSAk~~~~~~~~l~ 208 (329)
++||+|+++....+++.+.++ +..+.|||+++.+..+.++
T Consensus 121 l~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~ 169 (175)
T PF00025_consen 121 LANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLE 169 (175)
T ss_dssp EEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHH
T ss_pred EeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHH
Confidence 999999988755555554443 3488999999777666554
No 111
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.91 E-value=2.5e-23 Score=178.23 Aligned_cols=148 Identities=32% Similarity=0.599 Sum_probs=122.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC------CCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ------FSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~------~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+|+++|++|||||||++++.+.. ....+.||++.++..+..++..+.+|||||++.+..++..+++.+++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v-- 78 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAII-- 78 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEE--
Confidence 58999999999999999997642 2345678988888888777899999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|+|.+++++++....++.++.+.....++|+++++||+|+
T Consensus 79 ---------------------------------------~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~ 119 (167)
T cd04160 79 ---------------------------------------YVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDL 119 (167)
T ss_pred ---------------------------------------EEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccc
Confidence 99999999999999999999887655578999999999999
Q ss_pred CChhhHH---HHHHH-------hCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNALDEK---ELIDR-------IMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~~e~~---~l~~~-------~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.+....+ ++.+. .+.+++++||+++.+.+++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 164 (167)
T cd04160 120 PDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWL 164 (167)
T ss_pred ccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHH
Confidence 7763322 22222 23579999999988888877654
No 112
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.91 E-value=2.9e-23 Score=189.99 Aligned_cols=147 Identities=19% Similarity=0.210 Sum_probs=120.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeE--E--EeeCceEEEEEEecCCCccccchHHHHhh-ccceeEe
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNM--R--KITKGNVTIKVWDIGGQPRFRSMWERYCR-GVNAIVW 94 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~--~--~i~~~~~~l~I~DtpG~e~~~~~~~~~~~-~ad~iI~ 94 (329)
+||+++|++|||||||++++..+.+. ..+.||.+.++ . .+++....+.+|||||++ ......+++ ++|+++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~ii- 77 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFV- 77 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEE-
Confidence 58999999999999999999988886 67777775332 2 356677899999999998 223455666 899999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+..+.+.....++|+++|+||+|
T Consensus 78 ----------------------------------------lV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~D 117 (221)
T cd04148 78 ----------------------------------------VVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSD 117 (221)
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChh
Confidence 9999999999999999998887754446899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. .+++++++.++++++|+||+++.+++++++.+
T Consensus 118 l~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 118 LARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred ccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9654 34667888889999999999977777777655
No 113
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.90 E-value=9.1e-23 Score=169.86 Aligned_cols=148 Identities=26% Similarity=0.461 Sum_probs=127.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++++...+.+|.+..+.. .+.....+.+||+||++.+...+..+++++|+++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii--- 77 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAI--- 77 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEE---
Confidence 589999999999999999999999987778888877654 3446688999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|+|++++++++.+..|+..+.... ..+.|+++++||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 78 --------------------------------------LVYDITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLE 118 (159)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEccccc
Confidence 9999999999999999988887653 2579999999999995
Q ss_pred --Ch---hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 --NA---LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 --~~---~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.. .+..+++++.+.+++++||++...+++++..+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 157 (159)
T cd00154 119 DQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSL 157 (159)
T ss_pred ccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 22 56777888889999999999987777777654
No 114
>KOG0088|consensus
Probab=99.90 E-value=2.1e-24 Score=189.07 Aligned_cols=150 Identities=22% Similarity=0.352 Sum_probs=130.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
-.+||+++|.+.||||||+-++..++|..+..+|+...+. + +.+....++||||+|||+|+.+-+-|+++.++.+
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal- 90 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL- 90 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE-
Confidence 3689999999999999999999999998777777765443 3 4556678999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++|++||+.++.|..++..-. ...+.+++||||+|
T Consensus 91 ----------------------------------------LVyDITDrdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKiD 129 (218)
T KOG0088|consen 91 ----------------------------------------LVYDITDRDSFQKVKNWVLELRTML-GNEIELLIVGNKID 129 (218)
T ss_pred ----------------------------------------EEEeccchHHHHHHHHHHHHHHHHh-CCeeEEEEecCccc
Confidence 9999999999999999999997643 24678899999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|.++ .+++.+++..|..|+||||+.....+++++.+
T Consensus 130 LEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~L 170 (218)
T KOG0088|consen 130 LEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESL 170 (218)
T ss_pred HHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHH
Confidence 9876 57889999999999999999966666666544
No 115
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.90 E-value=7.4e-23 Score=175.25 Aligned_cols=147 Identities=18% Similarity=0.317 Sum_probs=120.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||++++.++++...+.||+...+. ..++..+.+++|||||++.+......+++.+|+++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i---- 76 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFL---- 76 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEE----
Confidence 58999999999999999999999987777787765443 24567789999999999988888888889999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++.+|..... |+..+... ..++|+++|+||+|+.
T Consensus 77 -------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~ 117 (171)
T cd00157 77 -------------------------------------ICFSVDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLR 117 (171)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhh
Confidence 9999999999988765 44444433 2489999999999986
Q ss_pred Chh----------------hHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 177 NAL----------------DEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~~----------------e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
+.. ++.+++..++. +++++||++....+++++.+
T Consensus 118 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 168 (171)
T cd00157 118 DDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEA 168 (171)
T ss_pred hchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHH
Confidence 543 34567777887 89999999988888877654
No 116
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.90 E-value=7.9e-23 Score=172.26 Aligned_cols=149 Identities=21% Similarity=0.308 Sum_probs=127.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
||+++|++|||||||++++.++.+...+.||.+..+.. +++..+.+++||+||++.+..++..+++++|+++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i----- 75 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFI----- 75 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEE-----
Confidence 68999999999999999999988888888887744432 3445688999999999999999999999999999
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~ 178 (329)
+|||++++++++++..++..+.+.....++|+++|+||+|+.+.
T Consensus 76 ------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 76 ------------------------------------LVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENE 119 (160)
T ss_pred ------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccc
Confidence 99999999999999999998887644468999999999999763
Q ss_pred -----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 179 -----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 179 -----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++.+++++++.+++++||++....+++++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~ 157 (160)
T cd00876 120 RQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLV 157 (160)
T ss_pred ceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Confidence 457778888889999999999877777776653
No 117
>KOG0083|consensus
Probab=99.90 E-value=1.1e-24 Score=186.39 Aligned_cols=143 Identities=29% Similarity=0.501 Sum_probs=126.0
Q ss_pred EEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 24 TLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 24 lllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
+++|++++|||+|+-++..+-|. ...++|+|++++. ++++.+++++|||+|||+|++....|++++|+.+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~all----- 75 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALL----- 75 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceee-----
Confidence 37899999999999999988874 5678999999985 5788899999999999999999999999999999
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~ 178 (329)
++||++|+.||++...|+.++-+.. ...+.+.++|||+|+..+
T Consensus 76 ------------------------------------llydiankasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~e 118 (192)
T KOG0083|consen 76 ------------------------------------LLYDIANKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHE 118 (192)
T ss_pred ------------------------------------eeeecccchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchh
Confidence 9999999999999999999997653 356788999999999654
Q ss_pred -----hhHHHHHHHhCCcEEEEeccc-hHHHHHHhh
Q psy2970 179 -----LDEKELIDRIMIDFWITLTLL-IRWCESFLH 208 (329)
Q Consensus 179 -----~e~~~l~~~~~~~~~etSAk~-~~~~~~~l~ 208 (329)
++++.+++.+++||.|||||+ -|+.-+|+.
T Consensus 119 r~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ 154 (192)
T KOG0083|consen 119 RAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLA 154 (192)
T ss_pred hccccchHHHHHHHHCCCceeccccccccHhHHHHH
Confidence 789999999999999999999 444445543
No 118
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=2.3e-22 Score=172.49 Aligned_cols=152 Identities=22% Similarity=0.347 Sum_probs=126.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
+..+||+++|++|||||||++++.++.+.+.+.+|++.++. .+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988888778888875543 24566688999999999999998899999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+..|+.++... ...++|+++|+||+
T Consensus 85 -----------------------------------------~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~ 122 (169)
T cd04114 85 -----------------------------------------LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKI 122 (169)
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECc
Confidence 999999999999998888777543 23579999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. ...+.+.+....+++++||+++.+.++++..+.
T Consensus 123 D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 123 DLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred ccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 99754 224566666678899999999888888877654
No 119
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.89 E-value=3.1e-22 Score=172.67 Aligned_cols=152 Identities=31% Similarity=0.589 Sum_probs=130.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
.++++|+++|++|||||||++++.+..+. .+.||.|.+...+...+..+.+||+||+..+...+..+++.+++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii---- 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLI---- 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEE----
Confidence 46799999999999999999999988764 4678888877777767789999999999988888888999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|+|+++..++.....++..++......++|+++++||+|+.+
T Consensus 87 -------------------------------------~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 87 -------------------------------------YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred -------------------------------------EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 9999999999998888888887665556899999999999988
Q ss_pred hhhHHHHHHHhCC--------cEEEEeccchHHHHHHhhhhc
Q psy2970 178 ALDEKELIDRIMI--------DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 178 ~~e~~~l~~~~~~--------~~~etSAk~~~~~~~~l~~i~ 211 (329)
..+.+++.+.+++ +++++||+++.+.+++++.+.
T Consensus 130 ~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 130 AAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred CCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHh
Confidence 7667777777775 368999999888888877653
No 120
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.89 E-value=1.7e-22 Score=178.77 Aligned_cols=149 Identities=21% Similarity=0.321 Sum_probs=123.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+.||+++|++|||||||++++..+.+.+.+.+|++..+.. +++..+.+.+|||+|++.+......+++++++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~l--- 77 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVIL--- 77 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEE---
Confidence 4699999999999999999999888887778887766542 3556678999999999988877777889999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+.+.. |+..+... ..++|+++||||+|+
T Consensus 78 --------------------------------------lv~~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl 117 (187)
T cd04129 78 --------------------------------------IGFAVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDL 117 (187)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhh
Confidence 9999999999999974 77766543 357999999999998
Q ss_pred CCh---------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA---------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~---------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+. .+++.++++++. +|+||||+++.+++++++.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 169 (187)
T cd04129 118 RQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAAT 169 (187)
T ss_pred hhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHH
Confidence 541 356778899985 899999999888888876654
No 121
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.89 E-value=2.1e-22 Score=174.04 Aligned_cols=148 Identities=17% Similarity=0.209 Sum_probs=114.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
+||+++|++|||||||++++.++.+...+.++...... .++...+.+.+|||||++.++..+..+++.+|+++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i----- 75 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVIC----- 75 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEE-----
Confidence 48999999999999999999999987554443322111 24567789999999999988888888889999999
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|||++++++|+.+.. |+..+.+. ..++|+++|+||+|+.+
T Consensus 76 ------------------------------------lv~d~~~~~s~~~~~~~~~~~i~~~--~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 76 ------------------------------------LVYSVDRPSTLERIRTKWLPLIRRL--GVKVPIILVGNKSDLRD 117 (166)
T ss_pred ------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccc
Confidence 9999999999999864 55555433 24799999999999976
Q ss_pred hhh-------HHHHHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 178 ALD-------EKELIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 178 ~~e-------~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
..+ ...+++++. .+++++||+++.+.++++..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 160 (166)
T cd01893 118 GSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQ 160 (166)
T ss_pred ccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHH
Confidence 422 233444554 3799999999888888776553
No 122
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.89 E-value=1.7e-22 Score=180.54 Aligned_cols=149 Identities=19% Similarity=0.192 Sum_probs=122.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
||+++|++|||||||++++..+.+...+.+|++.... .+.+..+.+++||+||++.+..++..+++++|+++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vi----- 75 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFA----- 75 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEE-----
Confidence 6899999999999999999999988777888753222 23455688999999999999999999999999999
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~ 178 (329)
+|||++++++|+.+..|+..+.+.....++|++||+||+|+...
T Consensus 76 ------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 119 (198)
T cd04147 76 ------------------------------------LVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE 119 (198)
T ss_pred ------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc
Confidence 99999999999999999998887655568999999999999652
Q ss_pred ------hhHHHHH-HHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 179 ------LDEKELI-DRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 179 ------~e~~~l~-~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+..+.. ..++.+++++||+++.+++++++.+.
T Consensus 120 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 120 ERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred cccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 1222222 24567899999999877887776654
No 123
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.88 E-value=1.2e-21 Score=177.07 Aligned_cols=150 Identities=24% Similarity=0.379 Sum_probs=127.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe----eCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||++++..+.+...+.||++.++... +.+.+.+.+|||+|++.+..++..+++.+++++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 4579999999999999999999999988888999999887652 567899999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||+++..+|..+..|+..+.+. ..++|++++|||+
T Consensus 87 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~ 123 (215)
T PTZ00132 87 -----------------------------------------IMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKV 123 (215)
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECc
Confidence 999999999999999999888654 3579999999999
Q ss_pred CCCCh---hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA---LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~---~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .+..++++..++.++++||+++...++.+..+
T Consensus 124 Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~i 163 (215)
T PTZ00132 124 DVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (215)
T ss_pred cCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 98653 23446777788999999999955555544333
No 124
>KOG0070|consensus
Probab=99.88 E-value=2e-22 Score=179.59 Aligned_cols=162 Identities=31% Similarity=0.675 Sum_probs=140.9
Q ss_pred ChHHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
|..++++++. .++.+++++|+++|.-|+||||++.++..+++.+. .||+|.++..+..+++++++||.+||++++.
T Consensus 1 MG~~~s~~~~---~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~ 76 (181)
T KOG0070|consen 1 MGLIFSKLFS---GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEKLRP 76 (181)
T ss_pred Ccchhhhhhh---hccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEcceEEEEEecCCCccccc
Confidence 4445555553 66788999999999999999999999999988755 9999999999999999999999999999999
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
+|..|+++++++| ||+|-+|++.+.+.++.+..++....
T Consensus 77 lW~~Y~~~t~~lI-----------------------------------------fVvDS~Dr~Ri~eak~eL~~~l~~~~ 115 (181)
T KOG0070|consen 77 LWKHYFQNTQGLI-----------------------------------------FVVDSSDRERIEEAKEELHRMLAEPE 115 (181)
T ss_pred chhhhccCCcEEE-----------------------------------------EEEeCCcHHHHHHHHHHHHHHHcCcc
Confidence 9999999999999 99999999999999999999999887
Q ss_pred CCCCcEEEEEEcCCCCChhhHHHHHHHhCC--------cEEEEeccchHHHHHHh
Q psy2970 161 LIGIPILVLGNKRDLPNALDEKELIDRIMI--------DFWITLTLLIRWCESFL 207 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~~--------~~~etSAk~~~~~~~~l 207 (329)
..+.|+++++||.|++++..+.++.+.+++ .+..|+|.++....+-+
T Consensus 116 l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl 170 (181)
T KOG0070|consen 116 LRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGL 170 (181)
T ss_pred cCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHH
Confidence 789999999999999999888888877764 24556777755444433
No 125
>KOG0097|consensus
Probab=99.88 E-value=2.2e-22 Score=173.76 Aligned_cols=150 Identities=20% Similarity=0.329 Sum_probs=133.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
--+|-+++|+-|||||+|+.+|...+|-.+-+.|+|+.+. .+.++.++++||||+|||+|+...++|++++.+.+
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal- 88 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL- 88 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee-
Confidence 3479999999999999999999999997777888888765 36789999999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++.++++..+..|+....+. ..++..|+++|||.|
T Consensus 89 ----------------------------------------mvyditrrstynhlsswl~dar~l-tnpnt~i~lignkad 127 (215)
T KOG0097|consen 89 ----------------------------------------MVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKAD 127 (215)
T ss_pred ----------------------------------------EEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhh
Confidence 999999999999999999988654 357888999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccc-hHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLL-IRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~-~~~~~~~l~~i 210 (329)
+..+ +++++++++.|+.|+|+|||+ .++.++|++..
T Consensus 128 le~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 128 LESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred hhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence 9876 679999999999999999999 66666777654
No 126
>KOG0073|consensus
Probab=99.87 E-value=3.5e-21 Score=169.19 Aligned_cols=145 Identities=31% Similarity=0.584 Sum_probs=130.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
..++++|+++|..|+||||++++|.+.+. ....||.|.+++.+..+.+++++||++||..+++.|+.|+..+|++|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglI--- 88 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLI--- 88 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEE---
Confidence 35699999999999999999999998774 46789999999999999999999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|+|.+|+.+|++....+.+++......+.|++|++||.|++
T Consensus 89 --------------------------------------wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 89 --------------------------------------WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred --------------------------------------EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 999999999999999999999887777889999999999999
Q ss_pred Ch---------hhHHHHHHHhCCcEEEEeccchHHH
Q psy2970 177 NA---------LDEKELIDRIMIDFWITLTLLIRWC 203 (329)
Q Consensus 177 ~~---------~e~~~l~~~~~~~~~etSAk~~~~~ 203 (329)
.+ .+++++++....+.+.|||.++...
T Consensus 131 ~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 131 GALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred cccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 65 3456666777789999999996433
No 127
>PLN00023 GTP-binding protein; Provisional
Probab=99.86 E-value=2.9e-21 Score=187.32 Aligned_cols=131 Identities=17% Similarity=0.386 Sum_probs=112.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--Ee--e-------------CceEEEEEEecCCCccccch
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KI--T-------------KGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i--~-------------~~~~~l~I~DtpG~e~~~~~ 81 (329)
.++||+++|+.|||||||+++|.++.+...+.||+|.++. .+ + .+.+.++||||+|+++|+.+
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL 99 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC 99 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence 4689999999999999999999999998888999997763 22 2 24688999999999999999
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc-
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ- 160 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~- 160 (329)
+..++++++++| +|||++++++|+++..|+.++.....
T Consensus 100 ~~~yyr~AdgiI-----------------------------------------LVyDITdr~SFenL~kWl~eI~~~~~~ 138 (334)
T PLN00023 100 RSLFYSQINGVI-----------------------------------------FVHDLSQRRTKTSLQKWASEVAATGTF 138 (334)
T ss_pred hHHhccCCCEEE-----------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhccc
Confidence 999999999999 99999999999999999999876421
Q ss_pred ----------CCCCcEEEEEEcCCCCCh-----------hhHHHHHHHhCC
Q psy2970 161 ----------LIGIPILVLGNKRDLPNA-----------LDEKELIDRIMI 190 (329)
Q Consensus 161 ----------~~~iPIiLVgNK~Dl~~~-----------~e~~~l~~~~~~ 190 (329)
..++|++|||||+|+.+. +++++++++.++
T Consensus 139 s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 139 SAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred ccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence 135899999999999542 457788888874
No 128
>KOG0393|consensus
Probab=99.86 E-value=3.3e-22 Score=181.38 Aligned_cols=147 Identities=18% Similarity=0.317 Sum_probs=128.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---e-eCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---I-TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i-~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..+|+++||++++|||+|+..+..+.|++.|.||+-.++.. + +++.+.+.+|||+||++|..++...+.++|.++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl- 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL- 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE-
Confidence 46899999999999999999999999999999999987763 6 488999999999999999888888999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
++|++.+++||+++. .|+.++... .+++|++|||+|.
T Consensus 82 ----------------------------------------~cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~ 119 (198)
T KOG0393|consen 82 ----------------------------------------LCFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKA 119 (198)
T ss_pred ----------------------------------------EEEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehH
Confidence 999999999999975 577777665 4899999999999
Q ss_pred CCCCh-----------------hhHHHHHHHhC-CcEEEEeccchHHHHHHhh
Q psy2970 174 DLPNA-----------------LDEKELIDRIM-IDFWITLTLLIRWCESFLH 208 (329)
Q Consensus 174 Dl~~~-----------------~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~ 208 (329)
||.++ +++.++++++| ..|+||||+++.+..+.++
T Consensus 120 DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~ 172 (198)
T KOG0393|consen 120 DLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFD 172 (198)
T ss_pred HhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHH
Confidence 99842 46889999999 6799999999555555543
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.83 E-value=8.8e-20 Score=156.35 Aligned_cols=147 Identities=17% Similarity=0.123 Sum_probs=104.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCC-C-CCceeeeEEEeeCceEEEEEEecCCCccccch----HH-----HHhhccc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQD-M-IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM----WE-----RYCRGVN 90 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~-~-~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~----~~-----~~~~~ad 90 (329)
+|+++|++|||||||++++.++.+... + .+|.+.....++.++.++.+|||||+.+.... +. .....+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 799999999999999999999887432 2 23555666566667789999999998532110 00 0011134
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH--HHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL--EASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~--~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+++ +|+|++++.++ +....|+..+.+. ..+.|+++
T Consensus 82 ~~l-----------------------------------------~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvil 118 (168)
T cd01897 82 AVL-----------------------------------------FLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIV 118 (168)
T ss_pred cEE-----------------------------------------EEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEE
Confidence 444 99999987653 6666777776543 24799999
Q ss_pred EEEcCCCCChhh---HHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 169 LGNKRDLPNALD---EKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 169 VgNK~Dl~~~~e---~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+||+|+.+..+ .+++.+..+.+++++||+++.+.+++++.+.
T Consensus 119 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (168)
T cd01897 119 VLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEVKNKAC 164 (168)
T ss_pred EEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHHHHHHH
Confidence 999999976533 3455555567899999999888888876654
No 130
>KOG0071|consensus
Probab=99.83 E-value=4e-20 Score=159.31 Aligned_cols=152 Identities=36% Similarity=0.691 Sum_probs=134.9
Q ss_pred HHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 12 ~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
+.++|..|+++|+.+|..++||||++..+..+... ...||+|.++..++.+++.+.+||++|+++.+.+|.+|+..+.+
T Consensus 9 ~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqg 87 (180)
T KOG0071|consen 9 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 87 (180)
T ss_pred HHHHhCcccceEEEEecccCCceehhhHHhcCCCc-ccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCce
Confidence 35667889999999999999999999999988765 56899999999999999999999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
+| ||+|..+.+.+++.++.+..+++.++..+.|++|.+|
T Consensus 88 lI-----------------------------------------FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlAN 126 (180)
T KOG0071|consen 88 LI-----------------------------------------FVVDSADRDRIEEARNELHRIINDREMRDAIILILAN 126 (180)
T ss_pred EE-----------------------------------------EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEec
Confidence 99 9999999999999999999999998889999999999
Q ss_pred cCCCCChhhHHHHHHHhCCc--------EEEEeccchHHHHH
Q psy2970 172 KRDLPNALDEKELIDRIMID--------FWITLTLLIRWCES 205 (329)
Q Consensus 172 K~Dl~~~~e~~~l~~~~~~~--------~~etSAk~~~~~~~ 205 (329)
|.|++++...+++.+.+++. ...++|.++....+
T Consensus 127 kQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 127 KQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred CcccccccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 99999998888877777642 44567776544433
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.83 E-value=2.2e-19 Score=147.96 Aligned_cols=149 Identities=20% Similarity=0.266 Sum_probs=113.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE--eeCce--EEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK--ITKGN--VTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~--i~~~~--~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
++||+++|.+|+|||||++++..+.+...+.++++.++.. +..++ +.+.+||+||++.+..++..+.+.+++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i-- 78 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSL-- 78 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEE--
Confidence 4799999999999999999999998777777777766654 43344 88999999999999999998999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc-ccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKLEASR-NELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~-~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
.++|+... .++.... .+...+..... .+.|+++++||+
T Consensus 79 ---------------------------------------~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~ 118 (161)
T TIGR00231 79 ---------------------------------------RVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKI 118 (161)
T ss_pred ---------------------------------------EEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcc
Confidence 77787766 5555555 55555544432 288999999999
Q ss_pred CCCChh---hHH-HHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNAL---DEK-ELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~~---e~~-~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.... +.. .+......+++++||+.+...+.+++.+
T Consensus 119 D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 119 DLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred cCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 997642 222 2333335689999999987777776654
No 132
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.83 E-value=1.3e-19 Score=157.14 Aligned_cols=144 Identities=16% Similarity=0.215 Sum_probs=108.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC-------CCCCCCCce------eeeEE----Ee-----eCceEEEEEEecCCCcccc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ-------FSQDMIPTV------GFNMR----KI-----TKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~-------~~~~~~pTi------g~~~~----~i-----~~~~~~l~I~DtpG~e~~~ 79 (329)
+|+++|.+|||||||++++.+.. +...+.+|. |..+. .+ +.+.+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998732 222233322 22221 11 5677889999999999999
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
..+..+++.+|+++ +|+|+++..+++....|.. +.
T Consensus 82 ~~~~~~~~~ad~~i-----------------------------------------~v~D~~~~~~~~~~~~~~~-~~--- 116 (179)
T cd01890 82 YEVSRSLAACEGAL-----------------------------------------LLVDATQGVEAQTLANFYL-AL--- 116 (179)
T ss_pred HHHHHHHHhcCeEE-----------------------------------------EEEECCCCccHhhHHHHHH-HH---
Confidence 99999999999999 9999998766665554433 22
Q ss_pred cCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc---EEEEeccchHHHHHHhhhhc
Q psy2970 160 QLIGIPILVLGNKRDLPNA---LDEKELIDRIMID---FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~---~~etSAk~~~~~~~~l~~i~ 211 (329)
..++|+++|+||+|+.+. ...+++++.++++ ++++||+++.+.+++++.+.
T Consensus 117 -~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (179)
T cd01890 117 -ENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIV 173 (179)
T ss_pred -HcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHH
Confidence 246899999999999653 2245777877774 89999999888888776664
No 133
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.83 E-value=1.8e-19 Score=152.58 Aligned_cols=143 Identities=17% Similarity=0.162 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC---CCCCC--CCceeeeEEEeeCc-eEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ---FSQDM--IPTVGFNMRKITKG-NVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~---~~~~~--~pTig~~~~~i~~~-~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
+.|+++|++|||||||++++.+.+ +...+ ..|++..+..+... ...+.+|||||++++......+++++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii- 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVL- 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEE-
Confidence 468999999999999999999643 33222 33555555544433 678999999999988776667788999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
+|+|+++ +++.+.+ ..+ +. ....|+++|+|
T Consensus 80 ----------------------------------------~V~d~~~~~~~~~~~~~----~~~-~~--~~~~~~ilv~N 112 (164)
T cd04171 80 ----------------------------------------LVVAADEGIMPQTREHL----EIL-EL--LGIKRGLVVLT 112 (164)
T ss_pred ----------------------------------------EEEECCCCccHhHHHHH----HHH-HH--hCCCcEEEEEE
Confidence 9999986 2332222 111 11 11248999999
Q ss_pred cCCCCChh-------hHHHHHHH---hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 172 KRDLPNAL-------DEKELIDR---IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 172 K~Dl~~~~-------e~~~l~~~---~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+|+.++. +..+..+. .+.+++++||++..+.+++++.+.
T Consensus 113 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 113 KADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHh
Confidence 99997652 22233333 357899999999888888776653
No 134
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.82 E-value=4.9e-20 Score=154.59 Aligned_cols=129 Identities=16% Similarity=0.190 Sum_probs=96.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCc-----cccchHHHHhhccceeEeec
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQP-----RFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e-----~~~~~~~~~~~~ad~iI~~~ 96 (329)
||+++|++|||||||++++.++.+ .+.+|++.++.. .+|||||+. .++.+.. .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~~--------~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi--- 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYND--------GAIDTPGEYVENRRLYSALIV-TAADADVIA--- 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEcC--------eeecCchhhhhhHHHHHHHHH-HhhcCCEEE---
Confidence 899999999999999999998876 356676665532 689999983 2333333 478899999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++.++... .|. +.. ..|+++|+||+|+.
T Consensus 68 --------------------------------------lv~d~~~~~s~~~~-~~~-~~~------~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 68 --------------------------------------LVQSATDPESRFPP-GFA-SIF------VKPVIGLVTKIDLA 101 (142)
T ss_pred --------------------------------------EEecCCCCCcCCCh-hHH-Hhc------cCCeEEEEEeeccC
Confidence 99999999887542 232 221 23999999999996
Q ss_pred Ch----hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 177 NA----LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~----~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
+. .++++++++.+. +++++||+++...+++++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 102 EADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred CcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 53 345667777776 79999999988888877654
No 135
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.82 E-value=3.3e-19 Score=152.81 Aligned_cols=149 Identities=21% Similarity=0.247 Sum_probs=105.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCceeeeEEEeeCceE-EEEEEecCCCc----cccchHHHHhh---ccce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQD--MIPTVGFNMRKITKGNV-TIKVWDIGGQP----RFRSMWERYCR---GVNA 91 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~--~~pTig~~~~~i~~~~~-~l~I~DtpG~e----~~~~~~~~~~~---~ad~ 91 (329)
+|+++|++|||||||+|++.+.+.... ..+|....+..+..++. .+.+|||||+. ..+.+...+++ .+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 589999999999999999997654211 12333333333444444 89999999974 22233444433 5888
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc-ccHHHHHHHHHHHHhCC-cCCCCcEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKLEASRNELHALIEKP-QLIGIPILVL 169 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~-~S~~~~~~~l~~i~~~~-~~~~iPIiLV 169 (329)
++ +|+|++++ ++++....|..++.+.. ...+.|+++|
T Consensus 82 vi-----------------------------------------~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv 120 (170)
T cd01898 82 LL-----------------------------------------HVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVV 120 (170)
T ss_pred EE-----------------------------------------EEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEE
Confidence 88 99999999 78888888877776542 2347899999
Q ss_pred EEcCCCCChhh----HHHHHHH-hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALD----EKELIDR-IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e----~~~l~~~-~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.+..+ .+++..+ .+.+++++||+....++++++.+.
T Consensus 121 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 167 (170)
T cd01898 121 LNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLA 167 (170)
T ss_pred EEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHH
Confidence 99999976532 3344444 367899999999888888776553
No 136
>PRK04213 GTP-binding protein; Provisional
Probab=99.81 E-value=1.1e-19 Score=161.72 Aligned_cols=147 Identities=21% Similarity=0.210 Sum_probs=103.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCC-----------CccccchHHHHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGG-----------QPRFRSMWERYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG-----------~e~~~~~~~~~~ 86 (329)
.+..+|+++|++|||||||+|++.++.+...+.|+++.....+..+ .+.+||||| ++.++..+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999887666666666554444433 588999999 566666666666
Q ss_pred h-cc---ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH-HH--------HHHHHH
Q psy2970 87 R-GV---NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL-EA--------SRNELH 153 (329)
Q Consensus 87 ~-~a---d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~-~~--------~~~~l~ 153 (329)
+ .+ +.++ +|+|.++...+ +. ....+.
T Consensus 85 ~~~~~~~~~vi-----------------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~l~ 123 (201)
T PRK04213 85 EDNADRILAAV-----------------------------------------LVVDGKSFIEIIERWEGRGEIPIDVEMF 123 (201)
T ss_pred HhhhhhheEEE-----------------------------------------EEEeCccccccccccccCCCcHHHHHHH
Confidence 5 33 3444 78887543221 10 011112
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCCChh--hHHHHHHHhCC---------cEEEEeccchHHHHHHhhhhc
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRIMI---------DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~~~~--e~~~l~~~~~~---------~~~etSAk~~~~~~~~l~~i~ 211 (329)
..+. ..++|+++|+||+|+.+.. ..+++++.+++ +++++||+++ +++++++.+.
T Consensus 124 ~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~ 188 (201)
T PRK04213 124 DFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIR 188 (201)
T ss_pred HHHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHH
Confidence 2222 2478999999999997653 56778888876 4899999999 8888887664
No 137
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.80 E-value=8.3e-19 Score=157.24 Aligned_cols=118 Identities=31% Similarity=0.499 Sum_probs=99.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe----eCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..+||+++|++|||||||++++.++.+...+.+|++..+... ..+.+++.+|||+|+++++.++..++.++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l- 82 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL- 82 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE-
Confidence 449999999999999999999999999999999988776542 223788999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc-ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~-~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+++|.++. .+++....|..++.... ..+.|+++|+||+
T Consensus 83 ----------------------------------------~~~d~~~~~~~~~~~~~~~~~l~~~~-~~~~~iilv~nK~ 121 (219)
T COG1100 83 ----------------------------------------IVYDSTLRESSDELTEEWLEELRELA-PDDVPILLVGNKI 121 (219)
T ss_pred ----------------------------------------EEEecccchhhhHHHHHHHHHHHHhC-CCCceEEEEeccc
Confidence 99999995 44555566666665542 2579999999999
Q ss_pred CCCCh
Q psy2970 174 DLPNA 178 (329)
Q Consensus 174 Dl~~~ 178 (329)
|+...
T Consensus 122 Dl~~~ 126 (219)
T COG1100 122 DLFDE 126 (219)
T ss_pred ccccc
Confidence 99875
No 138
>KOG4252|consensus
Probab=99.80 E-value=3.2e-20 Score=165.61 Aligned_cols=149 Identities=21% Similarity=0.327 Sum_probs=132.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
..-+|++++|..+|||||++++++.+.|..+|..|+|.++.. +..+++++.+|||+||+.+......|+++|.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 346899999999999999999999999999999999988753 6778888999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+||+.+|+.||+...+|.+++... ..++|.++|-||+
T Consensus 98 -----------------------------------------LVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKI 134 (246)
T KOG4252|consen 98 -----------------------------------------LVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKI 134 (246)
T ss_pred -----------------------------------------EEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccc
Confidence 999999999999999999999765 4689999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHH 209 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~ 209 (329)
|+.++ .+.+.+++++...++.+|++..-+....+..
T Consensus 135 Dlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~Y 175 (246)
T KOG4252|consen 135 DLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAY 175 (246)
T ss_pred hhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence 99765 6788999999999999999994444444433
No 139
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.79 E-value=7.2e-19 Score=143.29 Aligned_cols=110 Identities=25% Similarity=0.517 Sum_probs=85.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC------CCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
||+|+|++|||||||+++|.++.+. +....++......+......+.+||++|++.+...+...+..+|+++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i-- 78 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVI-- 78 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEE--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEE--
Confidence 7999999999999999999988765 12233444444456666667999999999988888777899999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHH---HHHHHhCCcCCCCcEEEEEEc
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNE---LHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~---l~~i~~~~~~~~iPIiLVgNK 172 (329)
+|||++++++|+++.++ +..+... ..++|++|||||
T Consensus 79 ---------------------------------------lv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK 117 (119)
T PF08477_consen 79 ---------------------------------------LVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNK 117 (119)
T ss_dssp ---------------------------------------EEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-
T ss_pred ---------------------------------------EEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEec
Confidence 99999999999997555 4444332 356999999999
Q ss_pred CC
Q psy2970 173 RD 174 (329)
Q Consensus 173 ~D 174 (329)
.|
T Consensus 118 ~D 119 (119)
T PF08477_consen 118 SD 119 (119)
T ss_dssp TC
T ss_pred cC
Confidence 98
No 140
>PTZ00099 rab6; Provisional
Probab=99.79 E-value=1.1e-18 Score=154.96 Aligned_cols=127 Identities=20% Similarity=0.362 Sum_probs=109.0
Q ss_pred CCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcC
Q psy2970 43 GQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDL 118 (329)
Q Consensus 43 ~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (329)
+.|.+.|.||+|.++.. ++++.+++.||||||+++++.++..+++++|+++
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~i------------------------- 57 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAI------------------------- 57 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEE-------------------------
Confidence 46777899999987753 4577899999999999999999999999999999
Q ss_pred CCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-----hhHHHHHHHhCCcEE
Q psy2970 119 GVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-----LDEKELIDRIMIDFW 193 (329)
Q Consensus 119 ~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-----~e~~~l~~~~~~~~~ 193 (329)
+|||++++++|+.+..|+.++.+.. ..++|++|||||+|+.+. .++..+++.++..|+
T Consensus 58 ----------------lv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~ 120 (176)
T PTZ00099 58 ----------------VVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFH 120 (176)
T ss_pred ----------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999987653 357899999999999642 567788888899999
Q ss_pred EEeccchHHHHHHhhhhc
Q psy2970 194 ITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 194 etSAk~~~~~~~~l~~i~ 211 (329)
|+||+++.+.+++++.+.
T Consensus 121 e~SAk~g~nV~~lf~~l~ 138 (176)
T PTZ00099 121 ETSAKAGHNIKVLFKKIA 138 (176)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999777787776553
No 141
>KOG0076|consensus
Probab=99.79 E-value=2.2e-19 Score=159.28 Aligned_cols=161 Identities=33% Similarity=0.632 Sum_probs=136.6
Q ss_pred ChHHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCC---C----CCCCCCceeeeEEEeeCceEEEEEEecC
Q psy2970 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQ---F----SQDMIPTVGFNMRKITKGNVTIKVWDIG 73 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~---~----~~~~~pTig~~~~~i~~~~~~l~I~Dtp 73 (329)
||.|+..++.++ |.|+.+.|+++|.-++|||||+.+..... + .....||+|.+...++....++.+||..
T Consensus 1 m~tl~~gl~~~~---~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlg 77 (197)
T KOG0076|consen 1 MFTLMSGLYKYM---FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLG 77 (197)
T ss_pred ChhHHHHHHHHH---hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcC
Confidence 888888777554 66789999999999999999999985421 1 1344589999998888778899999999
Q ss_pred CCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHH
Q psy2970 74 GQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELH 153 (329)
Q Consensus 74 G~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~ 153 (329)
||+..+++|..||..++++| +++|.+|++.|+.....++
T Consensus 78 GQe~lrSlw~~yY~~~H~ii-----------------------------------------~viDa~~~eR~~~~~t~~~ 116 (197)
T KOG0076|consen 78 GQESLRSLWKKYYWLAHGII-----------------------------------------YVIDATDRERFEESKTAFE 116 (197)
T ss_pred ChHHHHHHHHHHHHHhceeE-----------------------------------------EeecCCCHHHHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHHHhC---------CcEEEEeccchHHHHH
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIM---------IDFWITLTLLIRWCES 205 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~---------~~~~etSAk~~~~~~~ 205 (329)
.+.......++|+++.+||.|+.++.+++++..-++ .++..+||.++++.++
T Consensus 117 ~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~e 177 (197)
T KOG0076|consen 117 KVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKE 177 (197)
T ss_pred HHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHH
Confidence 998887788999999999999999865555443333 5799999999665554
No 142
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.79 E-value=2.3e-18 Score=153.75 Aligned_cols=152 Identities=19% Similarity=0.186 Sum_probs=107.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEeeCce-EEEEEEecCCCccccc--hHH------HHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKITKGN-VTIKVWDIGGQPRFRS--MWE------RYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i~~~~-~~l~I~DtpG~e~~~~--~~~------~~~ 86 (329)
+..++|+++|++|||||||++++.++.+. ..+.+|++.....+...+ ..+.+|||||..+... ... ..+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 118 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEV 118 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHH
Confidence 34579999999999999999999998753 223456555554443323 4899999999743211 111 124
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
..+|+++ +|+|++++.+++....+...+ +.....++|+
T Consensus 119 ~~~d~ii-----------------------------------------~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~v 156 (204)
T cd01878 119 AEADLLL-----------------------------------------HVVDASDPDYEEQIETVEKVL-KELGAEDIPM 156 (204)
T ss_pred hcCCeEE-----------------------------------------EEEECCCCChhhHHHHHHHHH-HHcCcCCCCE
Confidence 5677777 999999988877765554433 3223357899
Q ss_pred EEEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+||+|+.+...........+.+++++||+++.+.+++++.+.
T Consensus 157 iiV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~ 201 (204)
T cd01878 157 ILVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDELLEAIE 201 (204)
T ss_pred EEEEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHHHHHHHH
Confidence 999999999876544445555667899999999887888776553
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.79 E-value=2.6e-18 Score=139.07 Aligned_cols=144 Identities=26% Similarity=0.487 Sum_probs=112.2
Q ss_pred EEcCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEe----eCceEEEEEEecCCCccccchHHHHhhccceeEeeccee
Q psy2970 25 LVGLQCSGKTTFVNVIASGQF-SQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLY 99 (329)
Q Consensus 25 llG~~gvGKSSLin~l~~~~~-~~~~~pTig~~~~~i----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~ 99 (329)
++|++|+|||||++++.+... .....+|. ..+... ......+.+||+||+..+...+..+.+.+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i------ 73 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGII------ 73 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEE------
Confidence 589999999999999998877 44555555 544433 234788999999999988888888899999999
Q ss_pred eehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChh
Q psy2970 100 IVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL 179 (329)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~ 179 (329)
+|+|++++.+++....+...........++|+++++||+|+....
T Consensus 74 -----------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 74 -----------------------------------LVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER 118 (157)
T ss_pred -----------------------------------EEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc
Confidence 999999999888888874444444445789999999999997653
Q ss_pred h------HHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 180 D------EKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 180 e------~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+ ..........+++++|++.....+++++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 119 VVSEEELAEQLAKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred chHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence 2 223455556899999999987777776544
No 144
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.78 E-value=2.6e-18 Score=144.92 Aligned_cols=139 Identities=22% Similarity=0.241 Sum_probs=102.0
Q ss_pred EEcCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeEEEeeCceEEEEEEecCCCccccc------hHHHHhh--ccceeEe
Q psy2970 25 LVGLQCSGKTTFVNVIASGQFSQDMIP--TVGFNMRKITKGNVTIKVWDIGGQPRFRS------MWERYCR--GVNAIVW 94 (329)
Q Consensus 25 llG~~gvGKSSLin~l~~~~~~~~~~p--Tig~~~~~i~~~~~~l~I~DtpG~e~~~~------~~~~~~~--~ad~iI~ 94 (329)
|+|.+|||||||++++.+..+.....| |.......+..++..+.+|||||++.+.. ++..++. .+|+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi- 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV- 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE-
Confidence 589999999999999998875443334 33333444555557899999999987654 3455554 788888
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|+|.++++... .++.++.+ .++|+++|+||+|
T Consensus 80 ----------------------------------------~v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~D 112 (158)
T cd01879 80 ----------------------------------------NVVDATNLERNL---YLTLQLLE----LGLPVVVALNMID 112 (158)
T ss_pred ----------------------------------------EEeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhh
Confidence 999998765432 33434432 3689999999999
Q ss_pred CCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .+.+++++.++.+++++||+++...+++++.+.
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 113 EAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred hcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence 9764 245677888899999999999877887776553
No 145
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.77 E-value=1.2e-17 Score=168.21 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=103.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCceeeeE--EEeeCceEEEEEEecCCCccccch--------HHH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQF--SQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFRSM--------WER 84 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~--~~~~~pTig~~~--~~i~~~~~~l~I~DtpG~e~~~~~--------~~~ 84 (329)
.++.+||+++|++|||||||+|++++.+. ...+..| +.++ ..+..++.++.+|||||+...... ...
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgt-Trd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGT-TRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCc-EEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 45679999999999999999999998753 3333333 3332 345666788899999998665432 235
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++++|+++ +|+|++++.+++.. |+..+.. .++
T Consensus 279 ~~~~aD~il-----------------------------------------~V~D~s~~~s~~~~--~l~~~~~----~~~ 311 (442)
T TIGR00450 279 AIKQADLVI-----------------------------------------YVLDASQPLTKDDF--LIIDLNK----SKK 311 (442)
T ss_pred HHhhCCEEE-----------------------------------------EEEECCCCCChhHH--HHHHHhh----CCC
Confidence 678899999 99999998887765 5555532 468
Q ss_pred cEEEEEEcCCCCChhhHHHHHHHhCCcEEEEeccch
Q psy2970 165 PILVLGNKRDLPNALDEKELIDRIMIDFWITLTLLI 200 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~ 200 (329)
|+++|+||+|+.+. +.+++++.++.+++++||++.
T Consensus 312 piIlV~NK~Dl~~~-~~~~~~~~~~~~~~~vSak~~ 346 (442)
T TIGR00450 312 PFILVLNKIDLKIN-SLEFFVSSKVLNSSNLSAKQL 346 (442)
T ss_pred CEEEEEECccCCCc-chhhhhhhcCCceEEEEEecC
Confidence 99999999999765 556677888899999999983
No 146
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.76 E-value=8.3e-18 Score=144.31 Aligned_cols=146 Identities=24% Similarity=0.191 Sum_probs=104.1
Q ss_pred EEcCCCCCHHHHHHHHHcCCC--CCCCCCceeeeEEEeeCc-eEEEEEEecCCCcc----ccchH---HHHhhccceeEe
Q psy2970 25 LVGLQCSGKTTFVNVIASGQF--SQDMIPTVGFNMRKITKG-NVTIKVWDIGGQPR----FRSMW---ERYCRGVNAIVW 94 (329)
Q Consensus 25 llG~~gvGKSSLin~l~~~~~--~~~~~pTig~~~~~i~~~-~~~l~I~DtpG~e~----~~~~~---~~~~~~ad~iI~ 94 (329)
++|++|||||||+|++.+.++ .....+|.+.....+..+ ..++.+|||||... .+.+. ...++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii- 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL- 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE-
Confidence 589999999999999999864 222234444444445555 77899999999732 12222 33567788888
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc------ccHHHHHHHHHHHHhCCc------CC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT------DKLEASRNELHALIEKPQ------LI 162 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~------~S~~~~~~~l~~i~~~~~------~~ 162 (329)
+|+|++++ ++++....+..++..... ..
T Consensus 80 ----------------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (176)
T cd01881 80 ----------------------------------------HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLT 119 (176)
T ss_pred ----------------------------------------EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHh
Confidence 99999988 577777777777765432 24
Q ss_pred CCcEEEEEEcCCCCChhhHH-----HHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 163 GIPILVLGNKRDLPNALDEK-----ELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~~e~~-----~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.|+++|+||+|+....+.. ......+.+++++||++....+++++.+.
T Consensus 120 ~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~ 173 (176)
T cd01881 120 AKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIY 173 (176)
T ss_pred hCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHH
Confidence 79999999999998764332 23333457799999999888888876653
No 147
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.76 E-value=1.1e-17 Score=148.89 Aligned_cols=138 Identities=22% Similarity=0.291 Sum_probs=99.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--CCCCCCC------------CCceeee----EEEeeCceEEEEEEecCCCccccchHH
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS--GQFSQDM------------IPTVGFN----MRKITKGNVTIKVWDIGGQPRFRSMWE 83 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~--~~~~~~~------------~pTig~~----~~~i~~~~~~l~I~DtpG~e~~~~~~~ 83 (329)
+|+++|.+|||||||++++.. +.+...+ .++.|.. ...++.+...+.+|||||+++|...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999997 4443322 1223322 234667788999999999999999999
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.+++.+|+++ +|+|+++.. +.....++..+.. .+
T Consensus 84 ~~~~~~d~~i-----------------------------------------lV~d~~~~~-~~~~~~~~~~~~~----~~ 117 (194)
T cd01891 84 RVLSMVDGVL-----------------------------------------LLVDASEGP-MPQTRFVLKKALE----LG 117 (194)
T ss_pred HHHHhcCEEE-----------------------------------------EEEECCCCc-cHHHHHHHHHHHH----cC
Confidence 9999999999 999998742 3333444444432 46
Q ss_pred CcEEEEEEcCCCCChh------hHHHHHH-------HhCCcEEEEeccchHHHHH
Q psy2970 164 IPILVLGNKRDLPNAL------DEKELID-------RIMIDFWITLTLLIRWCES 205 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~------e~~~l~~-------~~~~~~~etSAk~~~~~~~ 205 (329)
+|+++|+||+|+.+.. +..++.+ +++++++++||+++....+
T Consensus 118 ~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 118 LKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccc
Confidence 8999999999996431 2222322 2367899999999655433
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.76 E-value=2.4e-17 Score=140.72 Aligned_cols=144 Identities=19% Similarity=0.171 Sum_probs=102.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcee--eeEEEeeC---ceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITK---GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig--~~~~~i~~---~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
.|+++|.+|||||||++++.++++.....+++. .....+.. ....+.+|||||++.+..++..++..+|+++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il--- 78 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAI--- 78 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEE---
Confidence 489999999999999999999887654333333 33333443 3678999999999999888888899999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|+|+++...- .....+..+ . ..++|+++|+||+|+.
T Consensus 79 --------------------------------------~v~d~~~~~~~-~~~~~~~~~-~---~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 79 --------------------------------------LVVAADDGVMP-QTIEAIKLA-K---AANVPFIVALNKIDKP 115 (168)
T ss_pred --------------------------------------EEEECCCCccH-HHHHHHHHH-H---HcCCCEEEEEEceecc
Confidence 99999874321 112222222 2 1468999999999997
Q ss_pred Chh--hH-HHHHH-------Hh--CCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NAL--DE-KELID-------RI--MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~~--e~-~~l~~-------~~--~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.. .. +++.+ .. ..+++++||+++.+.+++++.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T cd01887 116 NANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAIL 162 (168)
T ss_pred cccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHH
Confidence 541 11 11111 11 25799999999888888877664
No 149
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=2.3e-17 Score=138.41 Aligned_cols=142 Identities=18% Similarity=0.117 Sum_probs=100.3
Q ss_pred EEEcCCCCCHHHHHHHHHcCCC--CCCCCCc-eeeeEEEeeCceEEEEEEecCCCccccc--------hHHHHhhcccee
Q psy2970 24 TLVGLQCSGKTTFVNVIASGQF--SQDMIPT-VGFNMRKITKGNVTIKVWDIGGQPRFRS--------MWERYCRGVNAI 92 (329)
Q Consensus 24 lllG~~gvGKSSLin~l~~~~~--~~~~~pT-ig~~~~~i~~~~~~l~I~DtpG~e~~~~--------~~~~~~~~ad~i 92 (329)
+++|.+|||||||++++.+... .....++ ...........+..+.+|||||...... .....++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4799999999999999998753 2222333 2333444556668899999999987544 334567788888
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|+|..+..+.... .+.+.+.. .+.|+++|+||
T Consensus 81 i-----------------------------------------~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK 114 (157)
T cd01894 81 L-----------------------------------------FVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNK 114 (157)
T ss_pred E-----------------------------------------EEEeccccCCccHH--HHHHHHHh---cCCCEEEEEEC
Confidence 8 99999875443332 22233322 35899999999
Q ss_pred CCCCChhhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNALDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+.....+...+++. +++++||+++...++++..+.
T Consensus 115 ~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (157)
T cd01894 115 VDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAIL 154 (157)
T ss_pred cccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHH
Confidence 999887554444555666 799999999888888776553
No 150
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.75 E-value=2.6e-17 Score=137.81 Aligned_cols=141 Identities=16% Similarity=0.119 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeee--EEEeeCceEEEEEEecCCCccccch--------HHHHhhcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFN--MRKITKGNVTIKVWDIGGQPRFRSM--------WERYCRGV 89 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~--~~~i~~~~~~l~I~DtpG~e~~~~~--------~~~~~~~a 89 (329)
++|+++|++|+|||||++++.+.... ....+++... ...+..+..++.+|||||...+... ....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999987642 1122222222 2334555678999999997655322 12355677
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|+++ +|+|++++.+......+.. ..+.|+++|
T Consensus 82 ~~~v-----------------------------------------~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v 113 (157)
T cd04164 82 DLVL-----------------------------------------FVIDASRGLDEEDLEILEL-------PADKPIIVV 113 (157)
T ss_pred CEEE-----------------------------------------EEEECCCCCCHHHHHHHHh-------hcCCCEEEE
Confidence 7777 9999998877666544332 357899999
Q ss_pred EEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.+..+. .....+.+++++||++....+++.+.+.
T Consensus 114 ~nK~D~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 153 (157)
T cd04164 114 LNKSDLLPDSEL--LSLLAGKPIIAISAKTGEGLDELKEALL 153 (157)
T ss_pred EEchhcCCcccc--ccccCCCceEEEECCCCCCHHHHHHHHH
Confidence 999999876544 4455568899999999888888776654
No 151
>PRK15494 era GTPase Era; Provisional
Probab=99.75 E-value=3.2e-17 Score=159.88 Aligned_cols=148 Identities=16% Similarity=0.210 Sum_probs=101.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEeeCceEEEEEEecCCCcc-ccchHH-------HHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRKITKGNVTIKVWDIGGQPR-FRSMWE-------RYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~-~~~~~~-------~~~ 86 (329)
++..+|+++|++|||||||+|+|.++++. +...+|.......++.++.++.+|||||+.. +..+.. ..+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 46679999999999999999999998774 3333444333334556677899999999843 332222 236
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+++|+++ +|+|.++ ++.....++.+.+.. .+.|+
T Consensus 130 ~~aDvil-----------------------------------------~VvD~~~--s~~~~~~~il~~l~~---~~~p~ 163 (339)
T PRK15494 130 HSADLVL-----------------------------------------LIIDSLK--SFDDITHNILDKLRS---LNIVP 163 (339)
T ss_pred hhCCEEE-----------------------------------------EEEECCC--CCCHHHHHHHHHHHh---cCCCE
Confidence 6888888 9999765 455554433333332 34677
Q ss_pred EEEEEcCCCCCh--hhHHHHHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNA--LDEKELIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~--~e~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+||+|+.+. .+..+..++.. ..++++||+++.+.+++++.+.
T Consensus 164 IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~ 212 (339)
T PRK15494 164 IFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYIT 212 (339)
T ss_pred EEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHH
Confidence 889999999754 33444444443 5799999999888888876653
No 152
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=3.7e-17 Score=159.51 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-CCceeeeEEEeeC-ceEEEEEEecCCCccc----cchHHH---Hhhccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDM-IPTVGFNMRKITK-GNVTIKVWDIGGQPRF----RSMWER---YCRGVN 90 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~-~pTig~~~~~i~~-~~~~l~I~DtpG~e~~----~~~~~~---~~~~ad 90 (329)
-.|.|+|.||||||||++++++.+.. ..| .+|.......+.. +..++.+|||||...- ..+... .++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 36899999999999999999986543 222 3455555544544 4567999999997431 223333 445678
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC-cCCCCcEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP-QLIGIPILVL 169 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~-~~~~iPIiLV 169 (329)
+++ +|+|++++++++....|..++.... ...+.|+++|
T Consensus 239 vlI-----------------------------------------~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV 277 (335)
T PRK12299 239 LLL-----------------------------------------HLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILV 277 (335)
T ss_pred EEE-----------------------------------------EEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEE
Confidence 888 9999999888999888888876532 2357899999
Q ss_pred EEcCCCCChhh-----HHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALD-----EKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e-----~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.++.+ .+.+.++.+.+++++||++...++++++.+.
T Consensus 278 ~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~ 324 (335)
T PRK12299 278 LNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALW 324 (335)
T ss_pred EECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 99999976432 3334455678999999999878888776654
No 153
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.74 E-value=1.6e-17 Score=146.14 Aligned_cols=142 Identities=22% Similarity=0.266 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCC--CCceeeeEEEeeCceEEEEEEecCCCccccch------HHHHh--hccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDM--IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM------WERYC--RGVN 90 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~--~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~------~~~~~--~~ad 90 (329)
++|+++|.||||||||+|++++.+..... ..|+......+...+..+.+.|+||....... ...++ ++.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 58999999999999999999998864332 34555555557777799999999996544322 22333 4667
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
+++ .|+|.++. +.......++++ .++|+++++
T Consensus 81 ~ii-----------------------------------------~VvDa~~l---~r~l~l~~ql~e----~g~P~vvvl 112 (156)
T PF02421_consen 81 LII-----------------------------------------VVVDATNL---ERNLYLTLQLLE----LGIPVVVVL 112 (156)
T ss_dssp EEE-----------------------------------------EEEEGGGH---HHHHHHHHHHHH----TTSSEEEEE
T ss_pred EEE-----------------------------------------EECCCCCH---HHHHHHHHHHHH----cCCCEEEEE
Confidence 777 99999874 444455556654 479999999
Q ss_pred EcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 171 NKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 171 NK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
||+|+... .+.+.+.+.+++|.+.+||+++...+++.+.+
T Consensus 113 N~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 113 NKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred eCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 99999765 46889999999999999999988888887653
No 154
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.73 E-value=3.8e-17 Score=160.21 Aligned_cols=149 Identities=21% Similarity=0.237 Sum_probs=105.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEeeC-ceEEEEEEecCCCcc---------ccchHHHHh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKITK-GNVTIKVWDIGGQPR---------FRSMWERYC 86 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i~~-~~~~l~I~DtpG~e~---------~~~~~~~~~ 86 (329)
...+|+++|.+|||||||+|++++.++. ....+|.+...+.+.. ++.++.+|||||..+ |+..+ ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 3489999999999999999999998753 2334566665555544 456899999999722 22222 246
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
.++|.++ +|+|++++.+++....+...+ +.....++|+
T Consensus 267 ~~ADlil-----------------------------------------~VvD~s~~~~~~~~~~~~~~L-~~l~~~~~pi 304 (351)
T TIGR03156 267 READLLL-----------------------------------------HVVDASDPDREEQIEAVEKVL-EELGAEDIPQ 304 (351)
T ss_pred HhCCEEE-----------------------------------------EEEECCCCchHHHHHHHHHHH-HHhccCCCCE
Confidence 7888888 999999998877665443322 3222357899
Q ss_pred EEEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+||+|+.+..+...... ...+++++||+++.+.+++++.+.
T Consensus 305 IlV~NK~Dl~~~~~v~~~~~-~~~~~i~iSAktg~GI~eL~~~I~ 348 (351)
T TIGR03156 305 LLVYNKIDLLDEPRIERLEE-GYPEAVFVSAKTGEGLDLLLEAIA 348 (351)
T ss_pred EEEEEeecCCChHhHHHHHh-CCCCEEEEEccCCCCHHHHHHHHH
Confidence 99999999976544333222 224689999999888888877664
No 155
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.73 E-value=6.6e-17 Score=152.17 Aligned_cols=143 Identities=17% Similarity=0.128 Sum_probs=100.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEe-eCceEEEEEEecCCCccccc-h-------HHHHhhccc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKI-TKGNVTIKVWDIGGQPRFRS-M-------WERYCRGVN 90 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i-~~~~~~l~I~DtpG~e~~~~-~-------~~~~~~~ad 90 (329)
+|+++|.+|||||||+|+++++++. ....+|+...+..+ ..++.++.+|||||...... + ...+++++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999998763 23344555444443 44556799999999754321 1 234567888
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
+++ +|+|+++..+.+ ..+.+.+.. .+.|+++|+
T Consensus 82 vvl-----------------------------------------~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~ 114 (270)
T TIGR00436 82 LIL-----------------------------------------FVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTR 114 (270)
T ss_pred EEE-----------------------------------------EEEECCCCCchH---HHHHHHHHh---cCCCEEEEE
Confidence 888 999999876654 222223222 468999999
Q ss_pred EcCCCCChhh----HHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 171 NKRDLPNALD----EKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 171 NK~Dl~~~~e----~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+|+.+..+ ..++++..+. +++++||+++.+.+++++.+.
T Consensus 115 NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~ 160 (270)
T TIGR00436 115 NKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIE 160 (270)
T ss_pred ECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHH
Confidence 9999976533 2334444444 799999999888888876664
No 156
>KOG0074|consensus
Probab=99.73 E-value=1.2e-17 Score=144.19 Aligned_cols=133 Identities=33% Similarity=0.666 Sum_probs=120.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCce-EEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN-VTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~-~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
..++++|+++|-.|+|||||++++.+.+.. ...||-|++..++..+. +.+.+||.+||...+..|..|+.++|++|
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI-- 90 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLI-- 90 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEE--
Confidence 368899999999999999999999988764 56799999999986555 99999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
||+|.+|...|++....+-++++......+|+++.+||.|+
T Consensus 91 ---------------------------------------yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdl 131 (185)
T KOG0074|consen 91 ---------------------------------------YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDL 131 (185)
T ss_pred ---------------------------------------EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHH
Confidence 99999999999999999999999888889999999999999
Q ss_pred CChhhHHHHHHHhCCc
Q psy2970 176 PNALDEKELIDRIMID 191 (329)
Q Consensus 176 ~~~~e~~~l~~~~~~~ 191 (329)
..+...++.+.++++.
T Consensus 132 ltaa~~eeia~klnl~ 147 (185)
T KOG0074|consen 132 LTAAKVEEIALKLNLA 147 (185)
T ss_pred HhhcchHHHHHhcchh
Confidence 8887777888777754
No 157
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.72 E-value=1.1e-16 Score=155.77 Aligned_cols=150 Identities=21% Similarity=0.252 Sum_probs=106.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-CCceeeeEEEeeCce-EEEEEEecCCCccc----cchHHHH---hhccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDM-IPTVGFNMRKITKGN-VTIKVWDIGGQPRF----RSMWERY---CRGVN 90 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~-~pTig~~~~~i~~~~-~~l~I~DtpG~e~~----~~~~~~~---~~~ad 90 (329)
-.|+++|.||||||||++++++.+.. ..| .+|.......+...+ .++.+|||||.... ..+...+ ++.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 47999999999999999999987542 122 233333333344334 78999999997532 2233334 34588
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc---ccHHHHHHHHHHHHhC-CcCCCCcE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT---DKLEASRNELHALIEK-PQLIGIPI 166 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~---~S~~~~~~~l~~i~~~-~~~~~iPI 166 (329)
+++ +|+|+++. ++++....|..++... ....+.|+
T Consensus 238 ~ll-----------------------------------------~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~ 276 (329)
T TIGR02729 238 VLL-----------------------------------------HLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPR 276 (329)
T ss_pred EEE-----------------------------------------EEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCE
Confidence 888 99999986 6777777777766543 22357899
Q ss_pred EEEEEcCCCCChhh----HHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNALD----EKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~~e----~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+||+|+.++.+ .++++++++.+++++||++...+++++..+.
T Consensus 277 IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~ 325 (329)
T TIGR02729 277 IVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALA 325 (329)
T ss_pred EEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHH
Confidence 99999999977633 3445566678999999999887888776553
No 158
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.72 E-value=1.7e-16 Score=137.42 Aligned_cols=144 Identities=22% Similarity=0.173 Sum_probs=104.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCC------------------ceeeeEEEeeCceEEEEEEecCCCccccchHH
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIP------------------TVGFNMRKITKGNVTIKVWDIGGQPRFRSMWE 83 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~p------------------Tig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~ 83 (329)
+|+++|.+|+|||||++++.+........+ |.......++.....+.+|||||+.++...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999998766543322 22233334555678899999999999888888
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.+++.+|+++ +|+|.++..+.. ...++..+.. .+
T Consensus 81 ~~~~~~d~~i-----------------------------------------~v~d~~~~~~~~-~~~~~~~~~~----~~ 114 (189)
T cd00881 81 RGLSVSDGAI-----------------------------------------LVVDANEGVQPQ-TREHLRIARE----GG 114 (189)
T ss_pred HHHHhcCEEE-----------------------------------------EEEECCCCCcHH-HHHHHHHHHH----CC
Confidence 9999999999 999998765432 2233333322 57
Q ss_pred CcEEEEEEcCCCCChhh-------HHHHHHH--------------hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 164 IPILVLGNKRDLPNALD-------EKELIDR--------------IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~e-------~~~l~~~--------------~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.|+++|+||+|+..+.+ ..+..+. ...+++++||+.+.+.++++..+.
T Consensus 115 ~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~ 183 (189)
T cd00881 115 LPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIV 183 (189)
T ss_pred CCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHH
Confidence 89999999999976321 2222222 247799999999887777776553
No 159
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.72 E-value=1.1e-16 Score=161.62 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=105.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCC-ceeeeEEEeeCceEEEEEEecCCCccccch--------HHHHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF--SQDMIP-TVGFNMRKITKGNVTIKVWDIGGQPRFRSM--------WERYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~--~~~~~p-Tig~~~~~i~~~~~~l~I~DtpG~e~~~~~--------~~~~~ 86 (329)
++.++|+++|.+|||||||+|++.+.+. ...... |.......+..++.++.+|||||.+.+... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4568999999999999999999998764 222222 333333445566788999999998765432 22367
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+++|+++ +|+|++++.+++....|. . ..+.|+
T Consensus 293 ~~aD~il-----------------------------------------~VvD~s~~~s~~~~~~l~-~------~~~~pi 324 (449)
T PRK05291 293 EEADLVL-----------------------------------------LVLDASEPLTEEDDEILE-E------LKDKPV 324 (449)
T ss_pred HhCCEEE-----------------------------------------EEecCCCCCChhHHHHHH-h------cCCCCc
Confidence 7889888 999999988777543332 2 356899
Q ss_pred EEEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+||+|+.+..... ...+.+++++||+++.+.+++++.+.
T Consensus 325 iiV~NK~DL~~~~~~~---~~~~~~~i~iSAktg~GI~~L~~~L~ 366 (449)
T PRK05291 325 IVVLNKADLTGEIDLE---EENGKPVIRISAKTGEGIDELREAIK 366 (449)
T ss_pred EEEEEhhhccccchhh---hccCCceEEEEeeCCCCHHHHHHHHH
Confidence 9999999997654332 44567899999999888888776664
No 160
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.72 E-value=5.7e-17 Score=146.78 Aligned_cols=118 Identities=23% Similarity=0.362 Sum_probs=94.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEee----CceEEEEEEecCCCccccchHHHHhhcc-ceeEeec
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQPRFRSMWERYCRGV-NAIVWTG 96 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~----~~~~~l~I~DtpG~e~~~~~~~~~~~~a-d~iI~~~ 96 (329)
+|+++|++|||||||++++..+++...+.++ ..++..+. .+...+.+||+||+++++..+..+++.+ +++|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV--- 77 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIV--- 77 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEE---
Confidence 5899999999999999999998886554433 33333322 3467899999999999999998899998 9999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc-ccHHHHHHHHHHHHhCCc--CCCCcEEEEEEcC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKLEASRNELHALIEKPQ--LIGIPILVLGNKR 173 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~-~S~~~~~~~l~~i~~~~~--~~~iPIiLVgNK~ 173 (329)
+|+|.++. +++.....++.+++.... ..++|+++++||+
T Consensus 78 --------------------------------------~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~ 119 (203)
T cd04105 78 --------------------------------------FVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQ 119 (203)
T ss_pred --------------------------------------EEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecch
Confidence 99999987 778888888877755322 2589999999999
Q ss_pred CCCChhhH
Q psy2970 174 DLPNALDE 181 (329)
Q Consensus 174 Dl~~~~e~ 181 (329)
|+..+...
T Consensus 120 Dl~~a~~~ 127 (203)
T cd04105 120 DLFTAKPA 127 (203)
T ss_pred hhcccCCH
Confidence 99775433
No 161
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.71 E-value=3.6e-16 Score=132.48 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=96.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCce-eeeEEEeeCceEEEEEEecCCCccccch-----------HHHH
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTV-GFNMRKITKGNVTIKVWDIGGQPRFRSM-----------WERY 85 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTi-g~~~~~i~~~~~~l~I~DtpG~e~~~~~-----------~~~~ 85 (329)
.++|+++|.+|+|||||++++.+.... .....+. ......+..++..+.+|||||....... ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 579999999999999999999987642 1222222 1211234445566889999997544210 1123
Q ss_pred hhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc
Q psy2970 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP 165 (329)
Q Consensus 86 ~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP 165 (329)
++.+|+++ +|+|..++.+.... .++..+.. .+.|
T Consensus 82 ~~~~d~vi-----------------------------------------~v~d~~~~~~~~~~-~~~~~~~~----~~~~ 115 (174)
T cd01895 82 IERADVVL-----------------------------------------LVIDATEGITEQDL-RIAGLILE----EGKA 115 (174)
T ss_pred HhhcCeEE-----------------------------------------EEEeCCCCcchhHH-HHHHHHHh----cCCC
Confidence 45677777 99999988765443 23333322 4689
Q ss_pred EEEEEEcCCCCCh--hhH----HHHHHHhC----CcEEEEeccchHHHHHHhhhhc
Q psy2970 166 ILVLGNKRDLPNA--LDE----KELIDRIM----IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 166 IiLVgNK~Dl~~~--~e~----~~l~~~~~----~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+++++||+|+.+. .+. +.+.++++ .+++++||+++.+.+.+.+.+.
T Consensus 116 ~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 171 (174)
T cd01895 116 LVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAID 171 (174)
T ss_pred EEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHH
Confidence 9999999999765 332 23444443 6899999999887777776553
No 162
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.71 E-value=8.7e-17 Score=139.89 Aligned_cols=133 Identities=16% Similarity=0.192 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchH----HHHhhccceeEeecc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW----ERYCRGVNAIVWTGG 97 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~----~~~~~~ad~iI~~~~ 97 (329)
+|+++|.+|||||||+|++.+.... ..+|.+..+.. . .+|||||+...+..+ ...++++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~v~~~~---~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il---- 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQAVEFND---K----GDIDTPGEYFSHPRWYHALITTLQDVDMLI---- 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--CccceEEEECC---C----CcccCCccccCCHHHHHHHHHHHhcCCEEE----
Confidence 7999999999999999998765421 23444443321 1 269999974333222 22367888888
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|+|+++.+++. ..++.++ ..+.|+++++||+|+.+
T Consensus 70 -------------------------------------~v~d~~~~~s~~--~~~~~~~-----~~~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 70 -------------------------------------YVHGANDPESRL--PAGLLDI-----GVSKRQIAVISKTDMPD 105 (158)
T ss_pred -------------------------------------EEEeCCCccccc--CHHHHhc-----cCCCCeEEEEEccccCc
Confidence 999999887652 2343333 23679999999999965
Q ss_pred h--hhHHHHHHHhCC--cEEEEeccchHHHHHHhhhhc
Q psy2970 178 A--LDEKELIDRIMI--DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 178 ~--~e~~~l~~~~~~--~~~etSAk~~~~~~~~l~~i~ 211 (329)
. +...++.++.+. +++++||+++.+.++++..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 106 ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence 4 445667777774 899999999888888887765
No 163
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.70 E-value=3.1e-16 Score=139.35 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC----CCCC-----CCCCceeeeEEEee--------------CceEEEEEEecCCCcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG----QFSQ-----DMIPTVGFNMRKIT--------------KGNVTIKVWDIGGQPR 77 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~----~~~~-----~~~pTig~~~~~i~--------------~~~~~l~I~DtpG~e~ 77 (329)
++|+++|++|+|||||++++... .+.. ....|++..+..+. .+...+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 48999999999999999999872 1211 12345555444332 2367899999999865
Q ss_pred ccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh
Q psy2970 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE 157 (329)
Q Consensus 78 ~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~ 157 (329)
+..........+|+++ +|+|+++.........+. +..
T Consensus 81 ~~~~~~~~~~~~d~vi-----------------------------------------~VvD~~~~~~~~~~~~~~--~~~ 117 (192)
T cd01889 81 LIRTIIGGAQIIDLML-----------------------------------------LVVDATKGIQTQTAECLV--IGE 117 (192)
T ss_pred HHHHHHHHHhhCCEEE-----------------------------------------EEEECCCCccHHHHHHHH--HHH
Confidence 4332223345567888 999998754333322221 112
Q ss_pred CCcCCCCcEEEEEEcCCCCChhh----HHHHHH----H------hCCcEEEEeccchHHHHHHhhhhcC
Q psy2970 158 KPQLIGIPILVLGNKRDLPNALD----EKELID----R------IMIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 158 ~~~~~~iPIiLVgNK~Dl~~~~e----~~~l~~----~------~~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
. .+.|+++|+||+|+....+ .+++.+ . .+++++++||+++.+.+++++.+..
T Consensus 118 ~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~ 183 (192)
T cd01889 118 I---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNN 183 (192)
T ss_pred H---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHh
Confidence 1 3579999999999975421 222222 1 2578999999998888998877753
No 164
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=2.7e-16 Score=159.34 Aligned_cols=147 Identities=20% Similarity=0.169 Sum_probs=100.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcee--eeEEEeeCceEEEEEEecCCCcc--------ccchHHHHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVG--FNMRKITKGNVTIKVWDIGGQPR--------FRSMWERYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig--~~~~~i~~~~~~l~I~DtpG~e~--------~~~~~~~~~ 86 (329)
....+|+++|.+|||||||+|+++++... ....|+++ ..+..+...+..+.+|||||++. +..+...++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 34469999999999999999999987642 22233333 23334455667789999999863 334456678
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+++|+++ +|||+++..++.. ..+. +.+. ..++|+
T Consensus 116 ~~aD~il-----------------------------------------~VvD~~~~~s~~~-~~i~-~~l~---~~~~pi 149 (472)
T PRK03003 116 RTADAVL-----------------------------------------FVVDATVGATATD-EAVA-RVLR---RSGKPV 149 (472)
T ss_pred HhCCEEE-----------------------------------------EEEECCCCCCHHH-HHHH-HHHH---HcCCCE
Confidence 8999999 9999998765432 2222 2222 257899
Q ss_pred EEEEEcCCCCChh-hHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNAL-DEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~~-e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+||+|+.... +..++. .++. ..+++||+++.+.+++++.+.
T Consensus 150 ilV~NK~Dl~~~~~~~~~~~-~~g~~~~~~iSA~~g~gi~eL~~~i~ 195 (472)
T PRK03003 150 ILAANKVDDERGEADAAALW-SLGLGEPHPVSALHGRGVGDLLDAVL 195 (472)
T ss_pred EEEEECccCCccchhhHHHH-hcCCCCeEEEEcCCCCCcHHHHHHHH
Confidence 9999999997542 222222 2333 357999999777777776553
No 165
>KOG0072|consensus
Probab=99.70 E-value=3.9e-17 Score=141.41 Aligned_cols=162 Identities=28% Similarity=0.500 Sum_probs=136.9
Q ss_pred ChHHHHHHHHHHHhcCC-CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCcccc
Q psy2970 1 MFVLLNRILDWFKSLFW-KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~-~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~ 79 (329)
|.+.++++| +.++- .++++|+++|--|+||||+..++.-++.. ...||+|.+...+..+++++++||+.|+-..+
T Consensus 1 m~~g~~s~f---~~L~g~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~v~yKNLk~~vwdLggqtSir 76 (182)
T KOG0072|consen 1 MGGGFSSLF---KALQGPEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVETVPYKNLKFQVWDLGGQTSIR 76 (182)
T ss_pred CCchHHHHH---HHhcCCccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCccccccccccceeeEccCccccc
Confidence 445555554 55553 38999999999999999999999888875 45899999999999999999999999999999
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
..|+-|+.+++++| ||+|.+|.+...-....+..+++..
T Consensus 77 PyWRcYy~dt~avI-----------------------------------------yVVDssd~dris~a~~el~~mL~E~ 115 (182)
T KOG0072|consen 77 PYWRCYYADTDAVI-----------------------------------------YVVDSSDRDRISIAGVELYSMLQEE 115 (182)
T ss_pred HHHHHHhcccceEE-----------------------------------------EEEeccchhhhhhhHHHHHHHhccH
Confidence 99999999999999 9999999999888889999999888
Q ss_pred cCCCCcEEEEEEcCCCCChhhHHHHHHHhC--------CcEEEEeccchHHHHHHh
Q psy2970 160 QLIGIPILVLGNKRDLPNALDEKELIDRIM--------IDFWITLTLLIRWCESFL 207 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l 207 (329)
...+..++|++||.|...+....+..+.++ ...+++||.++...+..+
T Consensus 116 eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 116 ELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred hhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 888888999999999988754444444444 578999999976665544
No 166
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.70 E-value=1.5e-15 Score=150.78 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=100.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeee-EEEeeCceEEEEEEecCCCccccchH-----------HH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFN-MRKITKGNVTIKVWDIGGQPRFRSMW-----------ER 84 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~-~~~i~~~~~~l~I~DtpG~e~~~~~~-----------~~ 84 (329)
+.++|+++|.+|||||||+|++++.+.. .....|+... ...+..++..+.+|||||..+..... ..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 3489999999999999999999987632 2222233222 22344455688999999986554321 23
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++.+|+++ +|+|+++..+..... ++..+.+ .+.
T Consensus 251 ~~~~ad~~i-----------------------------------------lV~D~~~~~~~~~~~-~~~~~~~----~~~ 284 (429)
T TIGR03594 251 AIERADVVL-----------------------------------------LVLDATEGITEQDLR-IAGLILE----AGK 284 (429)
T ss_pred HHHhCCEEE-----------------------------------------EEEECCCCccHHHHH-HHHHHHH----cCC
Confidence 577888888 999999876655442 3333322 468
Q ss_pred cEEEEEEcCCCC-ChhhHHH----HHHHh----CCcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLP-NALDEKE----LIDRI----MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~-~~~e~~~----l~~~~----~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++|+||+|+. +....++ +.+.+ .++++++||+++.+++++++.+.
T Consensus 285 ~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~ 340 (429)
T TIGR03594 285 ALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAID 340 (429)
T ss_pred cEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHH
Confidence 999999999997 3332222 22332 36899999999877777776654
No 167
>KOG3883|consensus
Probab=99.69 E-value=4.2e-16 Score=136.26 Aligned_cols=153 Identities=15% Similarity=0.225 Sum_probs=126.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCceeeeEEE-e---eCceEEEEEEecCCCccc-cchHHHHhhccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF--SQDMIPTVGFNMRK-I---TKGNVTIKVWDIGGQPRF-RSMWERYCRGVN 90 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~--~~~~~pTig~~~~~-i---~~~~~~l~I~DtpG~e~~-~~~~~~~~~~ad 90 (329)
.+.+||+++|..+||||+++.++.-++. ...+.||+++.|.. + ++-.-.+.++||+|.... ..+-.+|+.-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 4679999999999999999999986654 35677999887754 3 233457999999998777 556788999999
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
+++ +|||..|++||+.+..+-.+|-....+..+||+|++
T Consensus 87 afV-----------------------------------------LVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLa 125 (198)
T KOG3883|consen 87 AFV-----------------------------------------LVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLA 125 (198)
T ss_pred eEE-----------------------------------------EEecCCCHHHHHHHHHHHHHHhhccccccccEEEEe
Confidence 999 999999999999988776666666667889999999
Q ss_pred EcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 171 NKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 171 NK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+|+.++ +.++.+++.-.+..||++|.....+-+++..+.
T Consensus 126 N~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~ 171 (198)
T KOG3883|consen 126 NKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLA 171 (198)
T ss_pred chhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHH
Confidence 99999765 457889999999999999999777777776664
No 168
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.69 E-value=7.2e-16 Score=129.03 Aligned_cols=147 Identities=19% Similarity=0.200 Sum_probs=98.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCceeeeEE-EeeCceEEEEEEecCCCccccch--------HHHHhh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQ--DMIPTVGFNMR-KITKGNVTIKVWDIGGQPRFRSM--------WERYCR 87 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~--~~~pTig~~~~-~i~~~~~~l~I~DtpG~e~~~~~--------~~~~~~ 87 (329)
...+|+++|++|+|||||++++.+.++.. ...++...... ........+.+|||||....... ....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999876531 11222222222 24455678999999997654332 233466
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
.+|+++ +|+|.+++. .....++.+.+.. .+.|++
T Consensus 82 ~~d~i~-----------------------------------------~v~d~~~~~--~~~~~~~~~~~~~---~~~~~i 115 (168)
T cd04163 82 DVDLVL-----------------------------------------FVVDASEPI--GEGDEFILELLKK---SKTPVI 115 (168)
T ss_pred hCCEEE-----------------------------------------EEEECCCcc--CchHHHHHHHHHH---hCCCEE
Confidence 777777 999999872 2222233333222 368999
Q ss_pred EEEEcCCCCC-hhh----HHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 168 VLGNKRDLPN-ALD----EKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 168 LVgNK~Dl~~-~~e----~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+||+|+.. ..+ .+.+....+ .+++++|++.....+++++.+.
T Consensus 116 iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~ 165 (168)
T cd04163 116 LVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIV 165 (168)
T ss_pred EEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHH
Confidence 9999999983 333 333444443 6899999999888888876654
No 169
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=6.4e-16 Score=155.11 Aligned_cols=149 Identities=21% Similarity=0.273 Sum_probs=108.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEeeCc-eEEEEEEecCCCcc----ccchHHHHh---hccce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKITKG-NVTIKVWDIGGQPR----FRSMWERYC---RGVNA 91 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i~~~-~~~l~I~DtpG~e~----~~~~~~~~~---~~ad~ 91 (329)
.|+++|.||||||||++++++.+.. ....+|...++..+... ...+.+|||||... ...+...++ +.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 7999999999999999999987643 22234555555545444 67899999999743 222334443 45788
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc---ccHHHHHHHHHHHHhC-CcCCCCcEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT---DKLEASRNELHALIEK-PQLIGIPIL 167 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~---~S~~~~~~~l~~i~~~-~~~~~iPIi 167 (329)
++ +|+|+++. +.++....|..++... ....+.|++
T Consensus 240 lI-----------------------------------------~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~I 278 (424)
T PRK12297 240 IV-----------------------------------------HVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQI 278 (424)
T ss_pred EE-----------------------------------------EEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEE
Confidence 88 99999865 5677777766666543 223578999
Q ss_pred EEEEcCCCCCh-hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 168 VLGNKRDLPNA-LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 168 LVgNK~Dl~~~-~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+||+|+.+. ...+++++.++.+++++||++....+++++.+.
T Consensus 279 VV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~ 323 (424)
T PRK12297 279 VVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGLDELLYAVA 323 (424)
T ss_pred EEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHH
Confidence 99999999654 346778888888899999999777777776653
No 170
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.69 E-value=8.4e-16 Score=135.29 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=98.6
Q ss_pred HhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeE--EEeeCceEEEEEEecCCCc----------cccc
Q psy2970 13 KSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQP----------RFRS 80 (329)
Q Consensus 13 ~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~--~~i~~~~~~l~I~DtpG~e----------~~~~ 80 (329)
+..+.....+|+++|.+|||||||++++.++++...+.++.+... .... .+..+.+|||||.. .+..
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 344455678999999999999999999999875444444444221 1122 23678999999953 2333
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
+...+++.++.+. ++++++|.+++.+... .++.+.++
T Consensus 96 ~~~~~~~~~~~~~--------------------------------------~~~~v~d~~~~~~~~~--~~i~~~l~--- 132 (196)
T PRK00454 96 LIEEYLRTRENLK--------------------------------------GVVLLIDSRHPLKELD--LQMIEWLK--- 132 (196)
T ss_pred HHHHHHHhCccce--------------------------------------EEEEEEecCCCCCHHH--HHHHHHHH---
Confidence 3344555443211 2228889877544322 22222322
Q ss_pred CCCCcEEEEEEcCCCCChhhHH----HHHHH---hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 161 LIGIPILVLGNKRDLPNALDEK----ELIDR---IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~e~~----~l~~~---~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
..+.|+++++||+|+.+..+.+ ++.+. ...+++++||++....+++++.+.
T Consensus 133 ~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~ 190 (196)
T PRK00454 133 EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIA 190 (196)
T ss_pred HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHH
Confidence 2468999999999997653222 22222 257899999999888888887664
No 171
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=6.8e-16 Score=156.39 Aligned_cols=148 Identities=21% Similarity=0.231 Sum_probs=102.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeE--EEeeCceEEEEEEecCCCcc----------ccchH-HH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNM--RKITKGNVTIKVWDIGGQPR----------FRSMW-ER 84 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~--~~i~~~~~~l~I~DtpG~e~----------~~~~~-~~ 84 (329)
...||+++|.+|||||||+|++++.+.. ....|+++.+. ..+..++..+.+|||||..+ +..+. ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 3589999999999999999999988652 22233333322 23444556778999999632 22222 23
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++++|+++ +|+|+++..+++... ++..+.+ .+.
T Consensus 290 ~i~~ad~vi-----------------------------------------lV~Da~~~~s~~~~~-~~~~~~~----~~~ 323 (472)
T PRK03003 290 AIEAAEVAV-----------------------------------------VLIDASEPISEQDQR-VLSMVIE----AGR 323 (472)
T ss_pred HHhcCCEEE-----------------------------------------EEEeCCCCCCHHHHH-HHHHHHH----cCC
Confidence 567888888 999999988877663 3444432 578
Q ss_pred cEEEEEEcCCCCChhh----HHHHHHHh----CCcEEEEeccchHHHHHHhhhhcC
Q psy2970 165 PILVLGNKRDLPNALD----EKELIDRI----MIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~e----~~~l~~~~----~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
|+++|+||+|+.+... .+++.+.+ ..+++++||+++.+++++++.+..
T Consensus 324 piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~ 379 (472)
T PRK03003 324 ALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALET 379 (472)
T ss_pred CEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999976421 12232222 368999999998888888877753
No 172
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=8.1e-16 Score=153.20 Aligned_cols=144 Identities=19% Similarity=0.163 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCC-ceeeeEEEeeCceEEEEEEecCCCcc--------ccchHHHHhhcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS--QDMIP-TVGFNMRKITKGNVTIKVWDIGGQPR--------FRSMWERYCRGV 89 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~--~~~~p-Tig~~~~~i~~~~~~l~I~DtpG~e~--------~~~~~~~~~~~a 89 (329)
.+|+++|.+|||||||+|++.+++.. ..+.. |....+..+..++..+.+|||||++. +......+++++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 48999999999999999999987642 22222 22333444555668899999999987 233345677889
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|+++ +|+|.++..+... .++.+.+.. .+.|+++|
T Consensus 82 d~il-----------------------------------------~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv 115 (435)
T PRK00093 82 DVIL-----------------------------------------FVVDGRAGLTPAD--EEIAKILRK---SNKPVILV 115 (435)
T ss_pred CEEE-----------------------------------------EEEECCCCCCHHH--HHHHHHHHH---cCCcEEEE
Confidence 9999 9999987533221 122222222 36899999
Q ss_pred EEcCCCCCh-hhHHHHHHHhCCc-EEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNA-LDEKELIDRIMID-FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~-~e~~~l~~~~~~~-~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.+. ....++ .+++.. ++++||+++.+.+.+++.+.
T Consensus 116 ~NK~D~~~~~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~ 158 (435)
T PRK00093 116 VNKVDGPDEEADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAIL 158 (435)
T ss_pred EECccCccchhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHH
Confidence 999998663 233333 355664 89999999777777776664
No 173
>PRK11058 GTPase HflX; Provisional
Probab=99.67 E-value=8.3e-16 Score=154.41 Aligned_cols=149 Identities=20% Similarity=0.175 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEeeCce-EEEEEEecCCCccc--cchHHH------Hhhcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKITKGN-VTIKVWDIGGQPRF--RSMWER------YCRGV 89 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i~~~~-~~l~I~DtpG~e~~--~~~~~~------~~~~a 89 (329)
.+|+++|.+|||||||+|++++.++. .....|.....+.+...+ ..+.+|||||..+. ..++.. .++++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 58999999999999999999987653 223345544444444333 37789999998442 223322 35778
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|+++ +|+|++++.+++....+..-+ ......++|+++|
T Consensus 278 DlIL-----------------------------------------~VvDaS~~~~~e~l~~v~~iL-~el~~~~~pvIiV 315 (426)
T PRK11058 278 TLLL-----------------------------------------HVVDAADVRVQENIEAVNTVL-EEIDAHEIPTLLV 315 (426)
T ss_pred CEEE-----------------------------------------EEEeCCCccHHHHHHHHHHHH-HHhccCCCCEEEE
Confidence 8888 999999998777664332222 2212347899999
Q ss_pred EEcCCCCChhhHHHHHHHhCCc-EEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALDEKELIDRIMID-FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e~~~l~~~~~~~-~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.+......-..+.+.+ ++++||+++.+.+.+++.+.
T Consensus 316 ~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~e~I~ 358 (426)
T PRK11058 316 MNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLFQALT 358 (426)
T ss_pred EEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHH
Confidence 9999997542211111234555 58999999888888887765
No 174
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.67 E-value=1e-15 Score=134.65 Aligned_cols=139 Identities=17% Similarity=0.209 Sum_probs=88.7
Q ss_pred cCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCce----eeeEEEeeCceEEEEEEecCCCcc----------ccc
Q psy2970 15 LFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTV----GFNMRKITKGNVTIKVWDIGGQPR----------FRS 80 (329)
Q Consensus 15 ~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTi----g~~~~~i~~~~~~l~I~DtpG~e~----------~~~ 80 (329)
....+..+|+++|++|||||||+|++.+..+...+.++. ...+...+ -.+.+|||||... +..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHHHHHHH
Confidence 335678999999999999999999999886433333333 33333332 2689999999532 222
Q ss_pred hHHHHhhc---cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh
Q psy2970 81 MWERYCRG---VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE 157 (329)
Q Consensus 81 ~~~~~~~~---ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~ 157 (329)
+...+++. +++++ +|+|.+++-+.... ..+ +.+.
T Consensus 90 ~~~~~l~~~~~~~~ii-----------------------------------------~vvd~~~~~~~~~~-~~~-~~~~ 126 (179)
T TIGR03598 90 LIEEYLEKRENLKGVV-----------------------------------------LLMDIRHPLKELDL-EML-EWLR 126 (179)
T ss_pred HHHHHHHhChhhcEEE-----------------------------------------EEecCCCCCCHHHH-HHH-HHHH
Confidence 33344443 35666 99999875443333 222 2333
Q ss_pred CCcCCCCcEEEEEEcCCCCChh----hHHHHHHHhC-----CcEEEEeccchHH
Q psy2970 158 KPQLIGIPILVLGNKRDLPNAL----DEKELIDRIM-----IDFWITLTLLIRW 202 (329)
Q Consensus 158 ~~~~~~iPIiLVgNK~Dl~~~~----e~~~l~~~~~-----~~~~etSAk~~~~ 202 (329)
. .+.|+++|+||+|+.++. ..+++.+.++ .+++++||+++.+
T Consensus 127 ~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~g 177 (179)
T TIGR03598 127 E---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTG 177 (179)
T ss_pred H---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCC
Confidence 2 478999999999997642 1233333333 3799999998543
No 175
>KOG0096|consensus
Probab=99.66 E-value=9.4e-17 Score=144.30 Aligned_cols=143 Identities=22% Similarity=0.349 Sum_probs=123.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe----eCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
-+|++++|+.|.||||++++...++|...+.+|+|...... +.+.+++..|||+|+|.+..+.+.|+-.+.+.|
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi-- 87 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI-- 87 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE--
Confidence 58999999999999999999999999999999999988763 334589999999999999999888888888888
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
++||++..-++.++..|.+++.... .++||+++|||.|.
T Consensus 88 ---------------------------------------imFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi 126 (216)
T KOG0096|consen 88 ---------------------------------------IMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDI 126 (216)
T ss_pred ---------------------------------------EEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceec
Confidence 9999999999999999999998763 56999999999999
Q ss_pred CChh---hHHHHHHHhCCcEEEEeccchHHHHH
Q psy2970 176 PNAL---DEKELIDRIMIDFWITLTLLIRWCES 205 (329)
Q Consensus 176 ~~~~---e~~~l~~~~~~~~~etSAk~~~~~~~ 205 (329)
.+.. ..-.+-++.+++|++.||++.-+.+.
T Consensus 127 ~~r~~k~k~v~~~rkknl~y~~iSaksn~Nfek 159 (216)
T KOG0096|consen 127 KARKVKAKPVSFHRKKNLQYYEISAKSNYNFER 159 (216)
T ss_pred cccccccccceeeecccceeEEeeccccccccc
Confidence 8764 23345667789999999999555444
No 176
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.65 E-value=1.2e-15 Score=151.31 Aligned_cols=144 Identities=19% Similarity=0.167 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCC-ceeeeEEEeeCceEEEEEEecCCCc--------cccchHHHHhhccc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS--QDMIP-TVGFNMRKITKGNVTIKVWDIGGQP--------RFRSMWERYCRGVN 90 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~--~~~~p-Tig~~~~~i~~~~~~l~I~DtpG~e--------~~~~~~~~~~~~ad 90 (329)
+|+++|.+|||||||+|++.+++.. ..+.. |....+..+..++..+.+|||||.. .+..+...+++++|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999987642 22222 2233344556667789999999963 33344566778888
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
+++ +|+|..+..+... ..+.+.++. .+.|+++|+
T Consensus 81 ~vl-----------------------------------------~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVv 114 (429)
T TIGR03594 81 VIL-----------------------------------------FVVDGREGLTPED--EEIAKWLRK---SGKPVILVA 114 (429)
T ss_pred EEE-----------------------------------------EEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEE
Confidence 888 9999987533222 222223222 468999999
Q ss_pred EcCCCCChhhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 171 NKRDLPNALDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 171 NK~Dl~~~~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+|+.+......-..+++. +++++||+++...+++++.+.
T Consensus 115 NK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~ 156 (429)
T TIGR03594 115 NKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAIL 156 (429)
T ss_pred ECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHH
Confidence 99999765332222345676 799999999777777776653
No 177
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=2.1e-15 Score=153.87 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=102.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-CC-CCCceeeeEEEeeCceEEEEEEecCCCccc----cchH---HHHhhccc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS-QD-MIPTVGFNMRKITKGNVTIKVWDIGGQPRF----RSMW---ERYCRGVN 90 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~-~~-~~pTig~~~~~i~~~~~~l~I~DtpG~e~~----~~~~---~~~~~~ad 90 (329)
-.+|+|+|.||||||||+|+|++.+.. .. ..+|+......++.++.++.+|||||.... ..+. -..++.++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 358999999999999999999987653 22 335556666667777789999999996422 1121 22355678
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc----ccHHHHHHHHHHHHhCC-------
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT----DKLEASRNELHALIEKP------- 159 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~----~S~~~~~~~l~~i~~~~------- 159 (329)
+++ +|+|+++. +.++....+..++....
T Consensus 239 vLv-----------------------------------------~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~ 277 (500)
T PRK12296 239 VLV-----------------------------------------HVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDL 277 (500)
T ss_pred EEE-----------------------------------------EEECCcccccccCchhhHHHHHHHHHHhhhcccccc
Confidence 888 99999853 34444444444443221
Q ss_pred ---cCCCCcEEEEEEcCCCCChhhHH----HHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 160 ---QLIGIPILVLGNKRDLPNALDEK----ELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 160 ---~~~~iPIiLVgNK~Dl~~~~e~~----~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
...+.|++||+||+|+++..+.. +..++.+.+++++||++...+++++..+
T Consensus 278 ~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L 335 (500)
T PRK12296 278 GLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFAL 335 (500)
T ss_pred hhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 23578999999999998653322 2223447899999999977777766554
No 178
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.65 E-value=2.9e-15 Score=160.04 Aligned_cols=145 Identities=20% Similarity=0.251 Sum_probs=107.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeEEEeeCceEEEEEEecCCCccccch----------HHHHh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIP--TVGFNMRKITKGNVTIKVWDIGGQPRFRSM----------WERYC 86 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~p--Tig~~~~~i~~~~~~l~I~DtpG~e~~~~~----------~~~~~ 86 (329)
++++|+++|.||||||||+|++++.+......| |++.....++.++.++.++||||..++... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 468999999999999999999998765422223 443334456778889999999998876432 12232
Q ss_pred --hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 87 --RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 87 --~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++|.++ +|+|.++.++- ..+..++.+ .++
T Consensus 82 ~~~~aD~vI-----------------------------------------~VvDat~ler~---l~l~~ql~e----~gi 113 (772)
T PRK09554 82 LSGDADLLI-----------------------------------------NVVDASNLERN---LYLTLQLLE----LGI 113 (772)
T ss_pred hccCCCEEE-----------------------------------------EEecCCcchhh---HHHHHHHHH----cCC
Confidence 2567777 99999886542 334444433 468
Q ss_pred cEEEEEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++|+||+|+.++ .+.+++.++++++++++||+++++.+++.+.+.
T Consensus 114 PvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~ 164 (772)
T PRK09554 114 PCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAID 164 (772)
T ss_pred CEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence 99999999998743 457788999999999999999888888777664
No 179
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.65 E-value=1.4e-15 Score=158.23 Aligned_cols=137 Identities=22% Similarity=0.262 Sum_probs=102.2
Q ss_pred cCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--EeeCceEEEEEEecCCCccccch------HHHHhh--ccceeEeec
Q psy2970 27 GLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRFRSM------WERYCR--GVNAIVWTG 96 (329)
Q Consensus 27 G~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~~~~~~l~I~DtpG~e~~~~~------~~~~~~--~ad~iI~~~ 96 (329)
|++|||||||+|++++++......|+++.+.. .++.++.++++|||||++++... ...++. ++|.++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI--- 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV--- 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE---
Confidence 89999999999999998775445555555443 45556678899999999887653 233333 567777
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|+|.++.+ ....+..++.+ .++|+++|+||+|+.
T Consensus 78 --------------------------------------~VvDat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 78 --------------------------------------NVVDASNLE---RNLYLTLQLLE----LGIPMILALNLVDEA 112 (591)
T ss_pred --------------------------------------EEecCCcch---hhHHHHHHHHh----cCCCEEEEEehhHHH
Confidence 999998744 33344444433 468999999999996
Q ss_pred Ch----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++ .+.++++++++++++++||+++++.+++++.+.
T Consensus 113 ~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 113 EKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred HhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 54 356788999999999999999888888887664
No 180
>PRK00089 era GTPase Era; Reviewed
Probab=99.64 E-value=5.5e-15 Score=139.91 Aligned_cols=147 Identities=18% Similarity=0.232 Sum_probs=99.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEe-eCceEEEEEEecCCCccccc--------hHHHHhh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKI-TKGNVTIKVWDIGGQPRFRS--------MWERYCR 87 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i-~~~~~~l~I~DtpG~e~~~~--------~~~~~~~ 87 (329)
+...|+++|++|||||||+|++++.++. .....|+......+ ..++.++.++||||...... .....+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4567999999999999999999998763 22334444444433 34558899999999755432 1223456
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
++|+++ +|+|+++. +.....++.+.+. ..+.|++
T Consensus 84 ~~D~il-----------------------------------------~vvd~~~~--~~~~~~~i~~~l~---~~~~pvi 117 (292)
T PRK00089 84 DVDLVL-----------------------------------------FVVDADEK--IGPGDEFILEKLK---KVKTPVI 117 (292)
T ss_pred cCCEEE-----------------------------------------EEEeCCCC--CChhHHHHHHHHh---hcCCCEE
Confidence 778777 99999883 2222233333333 2468999
Q ss_pred EEEEcCCCC-Chhh----HHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 168 VLGNKRDLP-NALD----EKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 168 LVgNK~Dl~-~~~e----~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+||+|+. +..+ .+.+.+..+ .+++++||+++.+.+++++.+.
T Consensus 118 lVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~ 167 (292)
T PRK00089 118 LVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIA 167 (292)
T ss_pred EEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999998 4333 334444444 5799999999877777776653
No 181
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.64 E-value=3.9e-15 Score=155.10 Aligned_cols=145 Identities=20% Similarity=0.238 Sum_probs=107.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC-------CCCCCCCc------eeeeEE----Ee-----eCceEEEEEEecCCCccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ-------FSQDMIPT------VGFNMR----KI-----TKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~-------~~~~~~pT------ig~~~~----~i-----~~~~~~l~I~DtpG~e~~ 78 (329)
-+|+++|..++|||||+++|.... +...+..+ .|..+. .+ +++.+.+++|||||+++|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 379999999999999999998642 22222211 132222 12 345689999999999999
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
...+..+++.+|+++ +|+|+++..+.+....|.... +
T Consensus 84 ~~~v~~~l~~aD~aI-----------------------------------------LVvDat~g~~~qt~~~~~~~~-~- 120 (595)
T TIGR01393 84 SYEVSRSLAACEGAL-----------------------------------------LLVDAAQGIEAQTLANVYLAL-E- 120 (595)
T ss_pred HHHHHHHHHhCCEEE-----------------------------------------EEecCCCCCCHhHHHHHHHHH-H-
Confidence 999999999999999 999999876666655554433 2
Q ss_pred CcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc---EEEEeccchHHHHHHhhhhc
Q psy2970 159 PQLIGIPILVLGNKRDLPNA---LDEKELIDRIMID---FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 159 ~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~---~~etSAk~~~~~~~~l~~i~ 211 (329)
.++|+++|+||+|+.+. ...+++++.++++ ++++||+++.+.+.+++.+.
T Consensus 121 ---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~ 176 (595)
T TIGR01393 121 ---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIV 176 (595)
T ss_pred ---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHH
Confidence 46899999999999754 2245677777764 89999999877777776653
No 182
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.63 E-value=3.4e-15 Score=122.80 Aligned_cols=141 Identities=20% Similarity=0.167 Sum_probs=96.5
Q ss_pred EEcCCCCCHHHHHHHHHcCCCC-CC-CCCcee-eeEEEeeCc-eEEEEEEecCCCccccc-------hHHHHhhccceeE
Q psy2970 25 LVGLQCSGKTTFVNVIASGQFS-QD-MIPTVG-FNMRKITKG-NVTIKVWDIGGQPRFRS-------MWERYCRGVNAIV 93 (329)
Q Consensus 25 llG~~gvGKSSLin~l~~~~~~-~~-~~pTig-~~~~~i~~~-~~~l~I~DtpG~e~~~~-------~~~~~~~~ad~iI 93 (329)
++|++|+|||||++++.+.... .. ..+++. ......... ...+.+|||||...... ....+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999986554 22 222222 222222222 67899999999876643 3344677888888
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|+|.++........ +..... ..+.|+++|+||+
T Consensus 81 -----------------------------------------~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~ 114 (163)
T cd00880 81 -----------------------------------------FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKI 114 (163)
T ss_pred -----------------------------------------EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEcc
Confidence 999999887665554 233332 3578999999999
Q ss_pred CCCChhhHHHH--------HHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNALDEKEL--------IDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~~e~~~l--------~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+....+.... ....+.+++++||++....+++++.+.
T Consensus 115 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~ 160 (163)
T cd00880 115 DLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALI 160 (163)
T ss_pred ccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHH
Confidence 99876443332 222347899999999877777776553
No 183
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=1.3e-14 Score=144.25 Aligned_cols=148 Identities=20% Similarity=0.245 Sum_probs=101.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCCC-CceeeeEEEeeCce-EEEEEEecCCCccccc----hH---HHHhhccce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS-QDMI-PTVGFNMRKITKGN-VTIKVWDIGGQPRFRS----MW---ERYCRGVNA 91 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~-~~~~-pTig~~~~~i~~~~-~~l~I~DtpG~e~~~~----~~---~~~~~~ad~ 91 (329)
.|.|+|.||||||||+|++++.+.. ..+. +|....+..+...+ ..+.++||||...-.. +. ...++.+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 7999999999999999999987643 2222 33344444444443 4689999999753211 11 234667788
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECC---CcccHHHHHHHHHHHHhC-CcCCCCcEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA---DTDKLEASRNELHALIEK-PQLIGIPIL 167 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt---~~~S~~~~~~~l~~i~~~-~~~~~iPIi 167 (329)
++ +|+|++ +.+.++....++.++... ....+.|++
T Consensus 241 lL-----------------------------------------~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~I 279 (390)
T PRK12298 241 LL-----------------------------------------HLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRW 279 (390)
T ss_pred EE-----------------------------------------EEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEE
Confidence 88 999988 456677777777776543 223568999
Q ss_pred EEEEcCCCCChhh----HHHHHHHhC--CcEEEEeccchHHHHHHhhhh
Q psy2970 168 VLGNKRDLPNALD----EKELIDRIM--IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 168 LVgNK~Dl~~~~e----~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i 210 (329)
||+||+|+.+..+ .+++.++++ .+++.+||++....+++++.+
T Consensus 280 lVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I 328 (390)
T PRK12298 280 LVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDL 328 (390)
T ss_pred EEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHH
Confidence 9999999976533 334445544 478999999976677766555
No 184
>KOG1673|consensus
Probab=99.61 E-value=1.6e-15 Score=132.89 Aligned_cols=146 Identities=21% Similarity=0.363 Sum_probs=122.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
-.+||-++|++.+|||||+-.+.++++.+.+..|.|+++.. +.+.++.+.|||++|++++.++.+..+.++-+++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl- 97 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL- 97 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE-
Confidence 46899999999999999999999999988888999988753 5677889999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
++||++.++++..+.+|+++.... +..-+|| +||+|.|
T Consensus 98 ----------------------------------------FmFDLt~r~TLnSi~~WY~QAr~~-NktAiPi-lvGTKyD 135 (205)
T KOG1673|consen 98 ----------------------------------------FMFDLTRRSTLNSIKEWYRQARGL-NKTAIPI-LVGTKYD 135 (205)
T ss_pred ----------------------------------------EEEecCchHHHHHHHHHHHHHhcc-CCccceE-EeccchH
Confidence 999999999999999999998654 3455775 7899998
Q ss_pred CCC----h------hhHHHHHHHhCCcEEEEeccchHHHHHHh
Q psy2970 175 LPN----A------LDEKELIDRIMIDFWITLTLLIRWCESFL 207 (329)
Q Consensus 175 l~~----~------~e~~~l~~~~~~~~~etSAk~~~~~~~~l 207 (329)
+-- + .++..+++-++.+.+.+|+....+....+
T Consensus 136 ~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 136 LFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF 178 (205)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence 632 2 34677888899999999998833333333
No 185
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.61 E-value=1.2e-14 Score=151.25 Aligned_cols=148 Identities=20% Similarity=0.202 Sum_probs=104.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeee--EEEeeCce-EEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN--MRKITKGN-VTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~--~~~i~~~~-~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+..+|+++|.+++|||||++++.+.++.....++++.. ...+..++ ..+.+|||||++.|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI- 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV- 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE-
Confidence 456899999999999999999999888765444433332 22333222 28899999999999999988899999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|+|+++... ....+.+... ...++|+++++||+|
T Consensus 164 ----------------------------------------LVVda~dgv~-~qT~e~i~~~----~~~~vPiIVviNKiD 198 (587)
T TIGR00487 164 ----------------------------------------LVVAADDGVM-PQTIEAISHA----KAANVPIIVAINKID 198 (587)
T ss_pred ----------------------------------------EEEECCCCCC-HhHHHHHHHH----HHcCCCEEEEEECcc
Confidence 9999886321 1222222222 135789999999999
Q ss_pred CCCh--hhHHHHHHHhC---------CcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA--LDEKELIDRIM---------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~--~e~~~l~~~~~---------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+++. ++..+..++++ .+++++||+++.+.+++++.+.
T Consensus 199 l~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~ 246 (587)
T TIGR00487 199 KPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMIL 246 (587)
T ss_pred cccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhh
Confidence 9753 23333333332 4699999999888888776653
No 186
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.60 E-value=1.5e-14 Score=133.99 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=52.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCC-CCceeeeEEEeeCceEEEEEEecCCCcccc----c---hHHHHhhcccee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS-QDM-IPTVGFNMRKITKGNVTIKVWDIGGQPRFR----S---MWERYCRGVNAI 92 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~-~~~-~pTig~~~~~i~~~~~~l~I~DtpG~e~~~----~---~~~~~~~~ad~i 92 (329)
+|+++|++|||||||++++.+.... ..+ .+|.......+..++..+++|||||+.... . .....++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 7899999999999999999987642 222 234444444455677899999999985432 1 234578889988
Q ss_pred E
Q psy2970 93 V 93 (329)
Q Consensus 93 I 93 (329)
+
T Consensus 82 l 82 (233)
T cd01896 82 L 82 (233)
T ss_pred E
Confidence 8
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.60 E-value=2.4e-14 Score=142.67 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=99.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCC-ceeeeE-EEeeCceEEEEEEecCCCccccch-----------HHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQF-SQDMIP-TVGFNM-RKITKGNVTIKVWDIGGQPRFRSM-----------WER 84 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~-~~~~~p-Tig~~~-~~i~~~~~~l~I~DtpG~e~~~~~-----------~~~ 84 (329)
..++|+++|.+|||||||+|++++.+. .....+ |+.... ..+..++..+.+|||||..+.... ...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 469999999999999999999997653 222222 322222 234456677899999997543221 123
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++.+|+++ +|+|+++..+..... ++..+.+ .+.
T Consensus 252 ~~~~ad~~i-----------------------------------------lViD~~~~~~~~~~~-i~~~~~~----~~~ 285 (435)
T PRK00093 252 AIERADVVL-----------------------------------------LVIDATEGITEQDLR-IAGLALE----AGR 285 (435)
T ss_pred HHHHCCEEE-----------------------------------------EEEeCCCCCCHHHHH-HHHHHHH----cCC
Confidence 567788888 999999876654432 2333322 468
Q ss_pred cEEEEEEcCCCCChhhHHHH----HHHh----CCcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLPNALDEKEL----IDRI----MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~e~~~l----~~~~----~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++|+||+|+.+..+.+++ .+.+ .++++++||+++..++++++.+.
T Consensus 286 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~ 340 (435)
T PRK00093 286 ALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAID 340 (435)
T ss_pred cEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999865333332 2222 37899999999888888776654
No 188
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.60 E-value=1.7e-14 Score=130.17 Aligned_cols=147 Identities=13% Similarity=0.060 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-----CCCCCceeeeEEEeeC---------------------------------
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-----QDMIPTVGFNMRKITK--------------------------------- 62 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-----~~~~pTig~~~~~i~~--------------------------------- 62 (329)
++|.++|..|+|||||+..+.+.... ....-|+...+..+..
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47899999999999999999754211 0111122222111110
Q ss_pred ceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc
Q psy2970 63 GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT 142 (329)
Q Consensus 63 ~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~ 142 (329)
...++.+|||||++++..........+|+++ +|+|++++
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~l-----------------------------------------lVvd~~~~ 119 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGAL-----------------------------------------LLIAANEP 119 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEE-----------------------------------------EEEECCCC
Confidence 1267899999999988776666777889999 99999874
Q ss_pred ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh----HHHHHHHh------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 143 DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD----EKELIDRI------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 143 ~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e----~~~l~~~~------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.........+..+... ...|+++|+||+|+.+..+ .+++.+.+ +.+++++||+++.+.+++++.+.
T Consensus 120 ~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~ 195 (203)
T cd01888 120 CPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIV 195 (203)
T ss_pred CCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHH
Confidence 2111112222222111 2257999999999986422 12232222 57899999999888888877664
No 189
>KOG0077|consensus
Probab=99.59 E-value=2.1e-15 Score=133.20 Aligned_cols=140 Identities=34% Similarity=0.671 Sum_probs=119.2
Q ss_pred HHHHHHhc-----CCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchH
Q psy2970 8 ILDWFKSL-----FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW 82 (329)
Q Consensus 8 ~~~~~~~~-----~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~ 82 (329)
+++||.+. +++|.-|++++|--|+|||||++.+.+++.. ++.||.-..-.++...+.+++.+|++|+..-+..|
T Consensus 3 l~ewF~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~w 81 (193)
T KOG0077|consen 3 LFEWFSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVW 81 (193)
T ss_pred HHHHHHHHHHHHHHhccCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCChHHheecCceEEEEccccHHHHHHHH
Confidence 45555543 4899999999999999999999999888764 56777776666677888999999999998889999
Q ss_pred HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCC
Q psy2970 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLI 162 (329)
Q Consensus 83 ~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~ 162 (329)
..|+..+|+++ +.+|+-|++.|.+.+..+..++......
T Consensus 82 kdyf~~v~~iv-----------------------------------------~lvda~d~er~~es~~eld~ll~~e~la 120 (193)
T KOG0077|consen 82 KDYFPQVDAIV-----------------------------------------YLVDAYDQERFAESKKELDALLSDESLA 120 (193)
T ss_pred HHHHhhhceeE-----------------------------------------eeeehhhHHHhHHHHHHHHHHHhHHHHh
Confidence 99999999999 9999999999999999999988876678
Q ss_pred CCcEEEEEEcCCCCChhhHHHHHHHhC
Q psy2970 163 GIPILVLGNKRDLPNALDEKELIDRIM 189 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~~e~~~l~~~~~ 189 (329)
++|+++.+||+|.+.+...+++.-.++
T Consensus 121 ~vp~lilgnKId~p~a~se~~l~~~l~ 147 (193)
T KOG0077|consen 121 TVPFLILGNKIDIPYAASEDELRFHLG 147 (193)
T ss_pred cCcceeecccccCCCcccHHHHHHHHH
Confidence 999999999999998865555554443
No 190
>COG1159 Era GTPase [General function prediction only]
Probab=99.59 E-value=1.2e-14 Score=138.79 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=104.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEE-eeCceEEEEEEecCCCccccchH--------HHHhh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRFRSMW--------ERYCR 87 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~-i~~~~~~l~I~DtpG~e~~~~~~--------~~~~~ 87 (329)
+.--|+++|.||||||||+|++.+.+.. ....+|+...++. ++.++.++.+.||||.-.-+... ...+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 4567999999999999999999999874 4456677777776 46778999999999965433322 33455
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
++|.++ +|+|.++... .-.+++.+.+.. .+.|++
T Consensus 85 dvDlil-----------------------------------------fvvd~~~~~~--~~d~~il~~lk~---~~~pvi 118 (298)
T COG1159 85 DVDLIL-----------------------------------------FVVDADEGWG--PGDEFILEQLKK---TKTPVI 118 (298)
T ss_pred cCcEEE-----------------------------------------EEEeccccCC--ccHHHHHHHHhh---cCCCeE
Confidence 677777 9999987432 222222233222 468999
Q ss_pred EEEEcCCCCChhh-HHHHHHHhC-----CcEEEEeccchHHHHHHhhhhc
Q psy2970 168 VLGNKRDLPNALD-EKELIDRIM-----IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 168 LVgNK~Dl~~~~e-~~~l~~~~~-----~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++.||+|...... +..+.+.+. ...+++||+.+.+++.+.+.+.
T Consensus 119 l~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~ 168 (298)
T COG1159 119 LVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIK 168 (298)
T ss_pred EEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHH
Confidence 9999999877644 334443332 3589999999888888876664
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.58 E-value=2.3e-14 Score=152.10 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=99.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCceeeeE-EEeeCceEEEEEEecCCCccc----------cch-HHHH
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQF--SQDMIPTVGFNM-RKITKGNVTIKVWDIGGQPRF----------RSM-WERY 85 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~--~~~~~pTig~~~-~~i~~~~~~l~I~DtpG~e~~----------~~~-~~~~ 85 (329)
..||+++|.+|||||||+|++++.+. ...+.+|+...+ ..+..++..+.+|||||..+. ..+ ...+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~ 529 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAA 529 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHH
Confidence 48999999999999999999998874 233333333222 223445556779999996421 111 1234
Q ss_pred hhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc
Q psy2970 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP 165 (329)
Q Consensus 86 ~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP 165 (329)
++.+|+++ +|+|+++..+.+... ++..+.+ .+.|
T Consensus 530 i~~advvi-----------------------------------------lViDat~~~s~~~~~-i~~~~~~----~~~p 563 (712)
T PRK09518 530 IERSELAL-----------------------------------------FLFDASQPISEQDLK-VMSMAVD----AGRA 563 (712)
T ss_pred hhcCCEEE-----------------------------------------EEEECCCCCCHHHHH-HHHHHHH----cCCC
Confidence 67788888 999999887766654 3344432 4689
Q ss_pred EEEEEEcCCCCChhhHHHHH----HHh----CCcEEEEeccchHHHHHHhhhhc
Q psy2970 166 ILVLGNKRDLPNALDEKELI----DRI----MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 166 IiLVgNK~Dl~~~~e~~~l~----~~~----~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+++|+||+|+.+....+.+. ..+ ..+.+++||+++.+++++++.+.
T Consensus 564 iIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~ 617 (712)
T PRK09518 564 LVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQ 617 (712)
T ss_pred EEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 99999999997653333232 222 14568999999888888887664
No 192
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.57 E-value=2.4e-14 Score=148.83 Aligned_cols=141 Identities=20% Similarity=0.249 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC---CCCCCCCC--ceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG---QFSQDMIP--TVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~---~~~~~~~p--Tig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+.|+++|.+++|||||+++|++. .+...+.+ |+...+..++.++..+.+||+||+++|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aI-- 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAAL-- 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEE--
Confidence 46899999999999999999963 33333333 444445556666689999999999998877777888999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHHHhCCcCCCCc-EEEEEE
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHALIEKPQLIGIP-ILVLGN 171 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgN 171 (329)
+|+|+++ +.+++.+. ++. ..++| ++||+|
T Consensus 79 ---------------------------------------LVVDa~~G~~~qT~ehl~-----il~---~lgi~~iIVVlN 111 (581)
T TIGR00475 79 ---------------------------------------LVVDADEGVMTQTGEHLA-----VLD---LLGIPHTIVVIT 111 (581)
T ss_pred ---------------------------------------EEEECCCCCcHHHHHHHH-----HHH---HcCCCeEEEEEE
Confidence 9999987 33333321 222 24677 999999
Q ss_pred cCCCCChh-------hHHHHHHHh----CCcEEEEeccchHHHHHHhhhh
Q psy2970 172 KRDLPNAL-------DEKELIDRI----MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 172 K~Dl~~~~-------e~~~l~~~~----~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+|+.+.. +.+++.+.+ +.+++++||+++.+.+++.+.+
T Consensus 112 K~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L 161 (581)
T TIGR00475 112 KADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKEL 161 (581)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHH
Confidence 99998753 233444444 4789999999976666665544
No 193
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.57 E-value=3.5e-14 Score=150.68 Aligned_cols=144 Identities=20% Similarity=0.224 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeE--EEeeCceEEEEEEecCCCcc--------ccchHHHHhhcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNM--RKITKGNVTIKVWDIGGQPR--------FRSMWERYCRGV 89 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~--~~i~~~~~~l~I~DtpG~e~--------~~~~~~~~~~~a 89 (329)
.+|+++|.+|||||||+|++++++.. ....|+++.+. .....++..+.+|||||.+. +......+++.+
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 355 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLA 355 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhC
Confidence 68999999999999999999987642 12233333322 23345567899999999764 233445577889
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|+++ +|+|+++. +......+.+.++. .++|+++|
T Consensus 356 D~iL-----------------------------------------~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV 389 (712)
T PRK09518 356 DAVV-----------------------------------------FVVDGQVG--LTSTDERIVRMLRR---AGKPVVLA 389 (712)
T ss_pred CEEE-----------------------------------------EEEECCCC--CCHHHHHHHHHHHh---cCCCEEEE
Confidence 9999 99999763 22222222333332 57899999
Q ss_pred EEcCCCCChh-hHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNAL-DEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~-e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.+.. ...++. .++. ..+++||+++.+.+++++.+.
T Consensus 390 ~NK~D~~~~~~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~ 432 (712)
T PRK09518 390 VNKIDDQASEYDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEAL 432 (712)
T ss_pred EECcccccchhhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHH
Confidence 9999986542 222222 2333 367999999777777776553
No 194
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.56 E-value=1.8e-14 Score=127.94 Aligned_cols=148 Identities=22% Similarity=0.241 Sum_probs=104.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--------------------CCCCCceeeeEEEee--CceEEEEEEecCCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--------------------QDMIPTVGFNMRKIT--KGNVTIKVWDIGGQ 75 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--------------------~~~~pTig~~~~~i~--~~~~~l~I~DtpG~ 75 (329)
|+-.+|+++|..++|||||+.+|...... ....-|+......+. .....+.++||||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 35579999999999999999999853211 112234444455566 77889999999999
Q ss_pred ccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHH
Q psy2970 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHAL 155 (329)
Q Consensus 76 e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i 155 (329)
.+|........+.+|+++ +|+|+.+.-. ....+.+..+
T Consensus 81 ~~f~~~~~~~~~~~D~ai-----------------------------------------lvVda~~g~~-~~~~~~l~~~ 118 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAI-----------------------------------------LVVDANDGIQ-PQTEEHLKIL 118 (188)
T ss_dssp HHHHHHHHHHHTTSSEEE-----------------------------------------EEEETTTBST-HHHHHHHHHH
T ss_pred cceeecccceecccccce-----------------------------------------eeeecccccc-cccccccccc
Confidence 998887777888999999 9999986532 2233333333
Q ss_pred HhCCcCCCCcEEEEEEcCCCCCh---hhHH----HHHHHhC------CcEEEEeccchHHHHHHhhhhc
Q psy2970 156 IEKPQLIGIPILVLGNKRDLPNA---LDEK----ELIDRIM------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 156 ~~~~~~~~iPIiLVgNK~Dl~~~---~e~~----~l~~~~~------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
. ..++|+++|.||+|+... ...+ .+.+..+ ++++.+||+++.+.+.+++.+.
T Consensus 119 ~----~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~ 183 (188)
T PF00009_consen 119 R----ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALV 183 (188)
T ss_dssp H----HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHH
T ss_pred c----ccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHH
Confidence 2 257899999999999843 1122 2333332 4799999999888888887654
No 195
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=9.5e-14 Score=134.05 Aligned_cols=168 Identities=20% Similarity=0.172 Sum_probs=115.3
Q ss_pred HHHHHHHHHhcC--CCCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCC-CceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 5 LNRILDWFKSLF--WKEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMI-PTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 5 ~~~~~~~~~~~~--~~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~-pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
+...-+.++.+- -..-..|++.|.||||||||++.+++.+.. ..|+ +|-++.+..+..+..++|+.||||..+.-
T Consensus 151 L~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP- 229 (346)
T COG1084 151 LRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP- 229 (346)
T ss_pred HHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCC-
Confidence 444444555442 224568999999999999999999998774 3444 55578888899999999999999975431
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc--ccHHHHHHHHHHHHhC
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT--DKLEASRNELHALIEK 158 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~--~S~~~~~~~l~~i~~~ 158 (329)
+-+..--+ -|+.-|+.++..+++|+||.+.. -+.+....+++++...
T Consensus 230 l~ErN~IE-------------------------------~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~ 278 (346)
T COG1084 230 LEERNEIE-------------------------------RQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL 278 (346)
T ss_pred hHHhcHHH-------------------------------HHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh
Confidence 11111111 12333788999999999999865 4678899999999775
Q ss_pred CcCCCCcEEEEEEcCCCCChhhHHHHHHH---h-CCcEEEEeccchHHHHHHh
Q psy2970 159 PQLIGIPILVLGNKRDLPNALDEKELIDR---I-MIDFWITLTLLIRWCESFL 207 (329)
Q Consensus 159 ~~~~~iPIiLVgNK~Dl~~~~e~~~l~~~---~-~~~~~etSAk~~~~~~~~l 207 (329)
.+.|+++|.||+|+.+.+..++.... - +.....+++......+...
T Consensus 279 ---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 328 (346)
T COG1084 279 ---FKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLR 328 (346)
T ss_pred ---cCCCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhhHHHHH
Confidence 23899999999999876444433322 2 3335556665544444433
No 196
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.56 E-value=2.1e-14 Score=143.61 Aligned_cols=145 Identities=19% Similarity=0.146 Sum_probs=99.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc--CCCC-------------------------------CCCCCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS--GQFS-------------------------------QDMIPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~--~~~~-------------------------------~~~~pTig~~~~~i~~~ 63 (329)
.+..++|+++|..++|||||+.+|+. +.+. .....|+......+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 46789999999999999999999974 2111 01133444555567778
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
+..+.+|||||+++|.......+..+|+++ +|+|+++.+
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~i-----------------------------------------lVvDa~~~~ 122 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAV-----------------------------------------LVVAVGDGE 122 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEE-----------------------------------------EEEECCCCC
Confidence 899999999999887655555678899999 999999875
Q ss_pred cHHHHH-HHHHHHHhCCcCCCCcEEEEEEcCCCCC--h-------hhHHHHHHHhC-----CcEEEEeccchHHHH
Q psy2970 144 KLEASR-NELHALIEKPQLIGIPILVLGNKRDLPN--A-------LDEKELIDRIM-----IDFWITLTLLIRWCE 204 (329)
Q Consensus 144 S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~Dl~~--~-------~e~~~l~~~~~-----~~~~etSAk~~~~~~ 204 (329)
++.... .+...+.+. ....|++||+||+|+.+ . .+.+++.++.+ ++++++||+++.+.+
T Consensus 123 ~~~~~~t~~~~~~~~~--~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~ 196 (426)
T TIGR00483 123 FEVQPQTREHAFLART--LGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVI 196 (426)
T ss_pred cccCCchHHHHHHHHH--cCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccc
Confidence 331111 111112221 12357999999999974 2 23445666665 579999999965544
No 197
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=9.9e-14 Score=124.24 Aligned_cols=149 Identities=22% Similarity=0.301 Sum_probs=111.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC------------CCCCCceeeeEEEeeCc-eEEEEEEecCCCccccchHH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS------------QDMIPTVGFNMRKITKG-NVTIKVWDIGGQPRFRSMWE 83 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~------------~~~~pTig~~~~~i~~~-~~~l~I~DtpG~e~~~~~~~ 83 (329)
...+.||++.|+.++||||+++++...... .....|+..++...... +..+.++|||||++|+-+|+
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 356899999999999999999999876531 11235667777776544 48999999999999999999
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.+.+++.+.| +++|.+++..+ .....+.-+ ... ..
T Consensus 87 ~l~~ga~gai-----------------------------------------vlVDss~~~~~-~a~~ii~f~-~~~--~~ 121 (187)
T COG2229 87 ILSRGAVGAI-----------------------------------------VLVDSSRPITF-HAEEIIDFL-TSR--NP 121 (187)
T ss_pred HHhCCcceEE-----------------------------------------EEEecCCCcch-HHHHHHHHH-hhc--cC
Confidence 9999999999 99999999888 333333333 321 12
Q ss_pred CcEEEEEEcCCCCChhhHHHH----HHH-hCCcEEEEeccchHHHHHHhhhh
Q psy2970 164 IPILVLGNKRDLPNALDEKEL----IDR-IMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~e~~~l----~~~-~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|++|++||.|+.++...+++ ... ..++.++++|.........+..+
T Consensus 122 ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~l 173 (187)
T COG2229 122 IPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVL 173 (187)
T ss_pred CCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHH
Confidence 999999999999987443322 223 36789999999865555555443
No 198
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.56 E-value=2.6e-14 Score=152.66 Aligned_cols=148 Identities=19% Similarity=0.196 Sum_probs=105.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcee--eeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig--~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+...|+++|..++|||||+++|..+++.....+++. .....+..++..+.||||||++.|..++......+|+++
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaI-- 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVV-- 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEE--
Confidence 4668999999999999999999998777543333322 222344545678999999999999999988899999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||+++... ......+... ...++|++|++||+|+
T Consensus 366 ---------------------------------------LVVdAddGv~-~qT~e~i~~a----~~~~vPiIVviNKiDl 401 (787)
T PRK05306 366 ---------------------------------------LVVAADDGVM-PQTIEAINHA----KAAGVPIIVAINKIDK 401 (787)
T ss_pred ---------------------------------------EEEECCCCCC-HhHHHHHHHH----HhcCCcEEEEEECccc
Confidence 9999987321 1111112222 2357999999999999
Q ss_pred CCh--hhH-HH------HHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA--LDE-KE------LIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~--~e~-~~------l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+. ... .+ +.++++ ++++++||+++.+++.+++.+.
T Consensus 402 ~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~ 448 (787)
T PRK05306 402 PGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAIL 448 (787)
T ss_pred cccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhh
Confidence 753 111 11 223343 6899999999888888877654
No 199
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.56 E-value=4.1e-14 Score=141.33 Aligned_cols=146 Identities=19% Similarity=0.146 Sum_probs=97.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC--CC-------------------------------CCCCCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ--FS-------------------------------QDMIPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~--~~-------------------------------~~~~pTig~~~~~i~~~ 63 (329)
.+..++|+++|.+++|||||+++|+... .. .....|+...+..++.+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 3678999999999999999999997321 10 02234555555567788
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
+.++.+|||||+++|..........+|+++ +|+|++++.
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~i-----------------------------------------lVvDa~~~~ 121 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAV-----------------------------------------LVVAADDAG 121 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEE-----------------------------------------EEEEcccCC
Confidence 899999999999887554444567889999 999998732
Q ss_pred cHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh---------hhHHHHHHHhC-----CcEEEEeccchHHHHH
Q psy2970 144 KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA---------LDEKELIDRIM-----IDFWITLTLLIRWCES 205 (329)
Q Consensus 144 S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~---------~e~~~l~~~~~-----~~~~etSAk~~~~~~~ 205 (329)
.+.....+...+... ....|+++++||+|+.+. .+..++.+.++ .+++++||+++.+.++
T Consensus 122 ~~~~~~~~~~~~~~~--~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 122 GVMPQTREHVFLART--LGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred CCCcchHHHHHHHHH--cCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 222222222222222 112469999999999752 13344455555 4699999999655543
No 200
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.55 E-value=3.7e-14 Score=128.48 Aligned_cols=138 Identities=17% Similarity=0.111 Sum_probs=90.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC--CC-------------------------------CCCCceeeeEEEeeCceEEEE
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQF--SQ-------------------------------DMIPTVGFNMRKITKGNVTIK 68 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~--~~-------------------------------~~~pTig~~~~~i~~~~~~l~ 68 (329)
+|+++|.+|+|||||+++|+...- .. ....|+......+..++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999964221 10 011233333334556677899
Q ss_pred EEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH
Q psy2970 69 VWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS 148 (329)
Q Consensus 69 I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~ 148 (329)
+|||||++++.......++.+|+++ +|+|+++... +..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~l-----------------------------------------lVvD~~~~~~-~~~ 118 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAI-----------------------------------------LLVDARKGVL-EQT 118 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEE-----------------------------------------EEEECCCCcc-HhH
Confidence 9999999887665666788899999 9999987531 111
Q ss_pred HHHHHHHHhCCcCCCCcEEEEEEcCCCCCh---------hhHHHHHHHhCC---cEEEEeccchHHHH
Q psy2970 149 RNELHALIEKPQLIGIPILVLGNKRDLPNA---------LDEKELIDRIMI---DFWITLTLLIRWCE 204 (329)
Q Consensus 149 ~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~---------~e~~~l~~~~~~---~~~etSAk~~~~~~ 204 (329)
... ..+... ....++++|+||+|+.+. .+.+++.+.++. +++.+||+++.+.+
T Consensus 119 ~~~-~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~ 183 (208)
T cd04166 119 RRH-SYILSL--LGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVV 183 (208)
T ss_pred HHH-HHHHHH--cCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCc
Confidence 111 122222 112457889999999742 133445566664 48999999975544
No 201
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.54 E-value=1.1e-13 Score=144.41 Aligned_cols=145 Identities=20% Similarity=0.162 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC--CCC-----CCC----------CCceeeeEEEe-----eCceEEEEEEecCCCccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG--QFS-----QDM----------IPTVGFNMRKI-----TKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~--~~~-----~~~----------~pTig~~~~~i-----~~~~~~l~I~DtpG~e~~ 78 (329)
-+|+++|..++|||||+.+|... .+. ..+ .-|+......+ +++.+.+++|||||+++|
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 48999999999999999999752 111 111 11221111112 455789999999999999
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
...+..+++.+|+++ +|+|+++....+....|....
T Consensus 88 ~~~v~~sl~~aD~aI-----------------------------------------LVVDas~gv~~qt~~~~~~~~--- 123 (600)
T PRK05433 88 SYEVSRSLAACEGAL-----------------------------------------LVVDASQGVEAQTLANVYLAL--- 123 (600)
T ss_pred HHHHHHHHHHCCEEE-----------------------------------------EEEECCCCCCHHHHHHHHHHH---
Confidence 999999999999999 999999865554444443322
Q ss_pred CcCCCCcEEEEEEcCCCCChh---hHHHHHHHhCCc---EEEEeccchHHHHHHhhhhc
Q psy2970 159 PQLIGIPILVLGNKRDLPNAL---DEKELIDRIMID---FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 159 ~~~~~iPIiLVgNK~Dl~~~~---e~~~l~~~~~~~---~~etSAk~~~~~~~~l~~i~ 211 (329)
..++|+++|+||+|+.+.. ..+++.+.++++ ++++||+++.+.+.+++.+.
T Consensus 124 --~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~ 180 (600)
T PRK05433 124 --ENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIV 180 (600)
T ss_pred --HCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHH
Confidence 2468999999999997542 235666767765 89999999877877776663
No 202
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.54 E-value=1.1e-13 Score=116.23 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=86.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--EeeCceEEEEEEecCCCcc----------ccchHHHHhhcc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPR----------FRSMWERYCRGV 89 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~~~~~~l~I~DtpG~e~----------~~~~~~~~~~~a 89 (329)
+|+++|++|+|||||++++.++.+.....++.+.... .+..+. .+.+|||||... +......++...
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 4899999999999999999966554444444443221 122222 889999999533 223333344332
Q ss_pred ---ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH--HHHHHHHHHHHhCCcCCCC
Q psy2970 90 ---NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL--EASRNELHALIEKPQLIGI 164 (329)
Q Consensus 90 ---d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~--~~~~~~l~~i~~~~~~~~i 164 (329)
+.++ +++|..+..+. ..+..++.. .+.
T Consensus 80 ~~~~~~~-----------------------------------------~v~d~~~~~~~~~~~~~~~l~~-------~~~ 111 (170)
T cd01876 80 ENLKGVV-----------------------------------------LLIDSRHGPTEIDLEMLDWLEE-------LGI 111 (170)
T ss_pred hhhhEEE-----------------------------------------EEEEcCcCCCHhHHHHHHHHHH-------cCC
Confidence 3344 88888765321 222233322 258
Q ss_pred cEEEEEEcCCCCChhh----HHHHHH-----HhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLPNALD----EKELID-----RIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~e----~~~l~~-----~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++|+||+|+....+ ...+.. ....+++++||++....+++.+.+.
T Consensus 112 ~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~ 167 (170)
T cd01876 112 PFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIE 167 (170)
T ss_pred CEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHH
Confidence 9999999999965422 112221 2235799999999877777776553
No 203
>KOG4423|consensus
Probab=99.54 E-value=2.3e-16 Score=141.59 Aligned_cols=139 Identities=22% Similarity=0.260 Sum_probs=119.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----ee-CceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----IT-KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~-~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
-+|++|+|+.|||||++++++....|...|..|+|+++.- .+ ..-+++++||++||+++..+...|++++.+..
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~- 103 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF- 103 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE-
Confidence 3799999999999999999999999998999999987642 33 33468899999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc---CCCCcEEEEEE
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ---LIGIPILVLGN 171 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~---~~~iPIiLVgN 171 (329)
+|||+++..+|+....|..++-.+.. ...+|+++.+|
T Consensus 104 ----------------------------------------iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllan 143 (229)
T KOG4423|consen 104 ----------------------------------------IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLAN 143 (229)
T ss_pred ----------------------------------------EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccc
Confidence 99999999999999999998866533 34578899999
Q ss_pred cCCCCCh------hhHHHHHHHhCC-cEEEEeccc
Q psy2970 172 KRDLPNA------LDEKELIDRIMI-DFWITLTLL 199 (329)
Q Consensus 172 K~Dl~~~------~e~~~l~~~~~~-~~~etSAk~ 199 (329)
|||.... +...++.++.|. ..+|||+|.
T Consensus 144 kCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ke 178 (229)
T KOG4423|consen 144 KCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKE 178 (229)
T ss_pred hhccChHhhhhhHHHHHHHHhccCccceeeecccc
Confidence 9999764 446678888886 599999999
No 204
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.53 E-value=1.6e-13 Score=137.50 Aligned_cols=149 Identities=13% Similarity=0.146 Sum_probs=105.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEE-EeeCceEEEEEEecCCCccccch--------HHHH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMR-KITKGNVTIKVWDIGGQPRFRSM--------WERY 85 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~-~i~~~~~~l~I~DtpG~e~~~~~--------~~~~ 85 (329)
-++.+|++++|.||||||||+|++.+.+-. ++..-|+.+.++ .++-+++++.+.||+|...-... ....
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 356799999999999999999999987652 444444444443 47899999999999996543222 2345
Q ss_pred hhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc
Q psy2970 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP 165 (329)
Q Consensus 86 ~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP 165 (329)
+++||.++ +|+|.+.+.+-+.. ..+. ....+.|
T Consensus 294 i~~ADlvL-----------------------------------------~v~D~~~~~~~~d~-~~~~-----~~~~~~~ 326 (454)
T COG0486 294 IEEADLVL-----------------------------------------FVLDASQPLDKEDL-ALIE-----LLPKKKP 326 (454)
T ss_pred HHhCCEEE-----------------------------------------EEEeCCCCCchhhH-HHHH-----hcccCCC
Confidence 66777777 99999986221111 1111 1246789
Q ss_pred EEEEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhcC
Q psy2970 166 ILVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 166 IiLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
+++|.||.|+..+.+...+.-.-+.+.+.+||+++...+.+.+++..
T Consensus 327 ~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~ 373 (454)
T COG0486 327 IIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDALREAIKQ 373 (454)
T ss_pred EEEEEechhcccccccchhhccCCCceEEEEecCccCHHHHHHHHHH
Confidence 99999999999886655442223457999999998777777766643
No 205
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.53 E-value=1.1e-13 Score=146.94 Aligned_cols=148 Identities=22% Similarity=0.203 Sum_probs=105.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcee--eeEEE--e--eCceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRK--I--TKGNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig--~~~~~--i--~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
.+...|+++|..++|||||+++|....+.....+++. ..... + +.....+.+|||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4667999999999999999999998777543332222 12222 2 2346899999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
++ +|+|+++....+. .+.+..+ ...++|++|++|
T Consensus 322 aI-----------------------------------------LVVDA~dGv~~QT-~E~I~~~----k~~~iPiIVViN 355 (742)
T CHL00189 322 AI-----------------------------------------LIIAADDGVKPQT-IEAINYI----QAANVPIIVAIN 355 (742)
T ss_pred EE-----------------------------------------EEEECcCCCChhh-HHHHHHH----HhcCceEEEEEE
Confidence 99 9999887422111 1112222 135789999999
Q ss_pred cCCCCChh--hHH-HH------HHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 172 KRDLPNAL--DEK-EL------IDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 172 K~Dl~~~~--e~~-~l------~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+|+.+.. +.. ++ .+.++ ++++++||+++.+.+++++.+.
T Consensus 356 KiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~ 406 (742)
T CHL00189 356 KIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETIL 406 (742)
T ss_pred CCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhh
Confidence 99997642 211 12 22333 6899999999888888887664
No 206
>KOG1489|consensus
Probab=99.50 E-value=8.7e-14 Score=133.81 Aligned_cols=157 Identities=22% Similarity=0.256 Sum_probs=107.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCC-CceeeeEEEeeCceE-EEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDMI-PTVGFNMRKITKGNV-TIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~~-pTig~~~~~i~~~~~-~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
..|-+||.||+|||||++++...+.. ..|. +|+...+..+.+++. .+.+-|+||...-..+.+ ++|
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nk-----------GlG 265 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNK-----------GLG 265 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccC-----------ccc
Confidence 45779999999999999999987653 2222 233333334444444 399999999653322211 122
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc---ccHHHHHHHHHHHHhC-CcCCCCcEEEEEEcC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT---DKLEASRNELHALIEK-PQLIGIPILVLGNKR 173 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~---~S~~~~~~~l~~i~~~-~~~~~iPIiLVgNK~ 173 (329)
..++ +|+.|+-.+. ||+|++.+ +.++.+..++.|+-.. ....+.|.++|+||+
T Consensus 266 ~~FL-rHiER~~~l~----------------------fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKi 322 (366)
T KOG1489|consen 266 YKFL-RHIERCKGLL----------------------FVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKI 322 (366)
T ss_pred HHHH-HHHHhhceEE----------------------EEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEecc
Confidence 2222 4444444443 99999988 7778777777766432 235788999999999
Q ss_pred CCCChh-h-HHHHHHHhCCc-EEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNAL-D-EKELIDRIMID-FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~~-e-~~~l~~~~~~~-~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++++ + ++++++.+.-+ .+++||+++++.+.++..+.
T Consensus 323 D~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr 363 (366)
T KOG1489|consen 323 DLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLR 363 (366)
T ss_pred CchhHHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHh
Confidence 996543 3 47888888766 99999999999999887765
No 207
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.1e-13 Score=143.65 Aligned_cols=145 Identities=21% Similarity=0.225 Sum_probs=109.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeE--EEeeCceEEEEEEecCCCccccch------HHHHhh--c
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFRSM------WERYCR--G 88 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~--~~i~~~~~~l~I~DtpG~e~~~~~------~~~~~~--~ 88 (329)
++.+|+++|+||||||||+|++++.+......|.+.++- ..+..++..+++.|+||-...... .++|+. +
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 457799999999999999999999877655566555444 346777777999999997654332 233332 3
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
.|.++ -|+|.+|.++--+ ...++++ .+.|+++
T Consensus 82 ~D~iv-----------------------------------------nVvDAtnLeRnLy---ltlQLlE----~g~p~il 113 (653)
T COG0370 82 PDLIV-----------------------------------------NVVDATNLERNLY---LTLQLLE----LGIPMIL 113 (653)
T ss_pred CCEEE-----------------------------------------EEcccchHHHHHH---HHHHHHH----cCCCeEE
Confidence 46666 8999998654333 3334443 3789999
Q ss_pred EEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 169 LGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 169 VgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.|++|..+. .+.+++.+.+|+|.++|||+.++.++++...+.
T Consensus 114 aLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~ 160 (653)
T COG0370 114 ALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAII 160 (653)
T ss_pred EeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence 9999999875 678999999999999999999888888887663
No 208
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.49 E-value=2.4e-13 Score=141.61 Aligned_cols=142 Identities=16% Similarity=0.198 Sum_probs=98.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCceeeeEEEeeC----------------ceEEEEEEecCCCcccc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQD----MIPTVGFNMRKITK----------------GNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~----~~pTig~~~~~i~~----------------~~~~l~I~DtpG~e~~~ 79 (329)
.--|+++|.+++|||||+++|.+..+... ..+++|..+...+. +...+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 34699999999999999999998876432 22344443322110 11238899999999999
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHHH
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHALI 156 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i~ 156 (329)
.++..+++.+|+++ +|+|+++ +.+++.+. ++
T Consensus 84 ~l~~~~~~~aD~~I-----------------------------------------lVvD~~~g~~~qt~e~i~-----~l 117 (590)
T TIGR00491 84 NLRKRGGALADLAI-----------------------------------------LIVDINEGFKPQTQEALN-----IL 117 (590)
T ss_pred HHHHHHHhhCCEEE-----------------------------------------EEEECCcCCCHhHHHHHH-----HH
Confidence 99999999999999 9999987 34443332 11
Q ss_pred hCCcCCCCcEEEEEEcCCCCChh--------------hH---------------HHHHH------------Hh--CCcEE
Q psy2970 157 EKPQLIGIPILVLGNKRDLPNAL--------------DE---------------KELID------------RI--MIDFW 193 (329)
Q Consensus 157 ~~~~~~~iPIiLVgNK~Dl~~~~--------------e~---------------~~l~~------------~~--~~~~~ 193 (329)
. ..++|+++++||+|+.+.. +. .++++ ++ .++++
T Consensus 118 ~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iV 194 (590)
T TIGR00491 118 R---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAII 194 (590)
T ss_pred H---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEE
Confidence 2 2468999999999996420 00 01111 12 26899
Q ss_pred EEeccchHHHHHHhhhh
Q psy2970 194 ITLTLLIRWCESFLHHF 210 (329)
Q Consensus 194 etSAk~~~~~~~~l~~i 210 (329)
++||+++.+.++++..+
T Consensus 195 pVSA~tGeGideLl~~l 211 (590)
T TIGR00491 195 PISAITGEGIPELLTML 211 (590)
T ss_pred EeecCCCCChhHHHHHH
Confidence 99999988888877655
No 209
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.49 E-value=3.8e-13 Score=127.36 Aligned_cols=129 Identities=21% Similarity=0.211 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCC----------------------CCCCceeeeEEEeeCceEEEEEEecCCCc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ--FSQ----------------------DMIPTVGFNMRKITKGNVTIKVWDIGGQP 76 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~--~~~----------------------~~~pTig~~~~~i~~~~~~l~I~DtpG~e 76 (329)
-+|+++|.+|+|||||+++++... ... ....++......++.++.++.+|||||++
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 369999999999999999997421 100 01122223334567888999999999999
Q ss_pred cccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHH
Q psy2970 77 RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALI 156 (329)
Q Consensus 77 ~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~ 156 (329)
+|.......++.+|+++ +|+|.++... .....++...
T Consensus 83 df~~~~~~~l~~aD~~I-----------------------------------------lVvda~~g~~-~~~~~i~~~~- 119 (267)
T cd04169 83 DFSEDTYRTLTAVDSAV-----------------------------------------MVIDAAKGVE-PQTRKLFEVC- 119 (267)
T ss_pred HHHHHHHHHHHHCCEEE-----------------------------------------EEEECCCCcc-HHHHHHHHHH-
Confidence 98877777889999999 9999987432 1222333222
Q ss_pred hCCcCCCCcEEEEEEcCCCCChhh---HHHHHHHhCCcEEEE
Q psy2970 157 EKPQLIGIPILVLGNKRDLPNALD---EKELIDRIMIDFWIT 195 (329)
Q Consensus 157 ~~~~~~~iPIiLVgNK~Dl~~~~e---~~~l~~~~~~~~~et 195 (329)
+ ..++|+++++||+|+..+.. .+++.+.++.+.+..
T Consensus 120 ~---~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~~~ 158 (267)
T cd04169 120 R---LRGIPIITFINKLDREGRDPLELLDEIEEELGIDCTPL 158 (267)
T ss_pred H---hcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCceeE
Confidence 2 24789999999999977532 567778888654443
No 210
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.48 E-value=4.4e-13 Score=134.07 Aligned_cols=145 Identities=14% Similarity=0.037 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEeeCceEEEEEEecCCCcccc---------chHHHHhhc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR---------SMWERYCRG 88 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~---------~~~~~~~~~ 88 (329)
..|+++|.||||||||+|||++.+.. .....|....|......+..+.+.||+|.+... .+....+.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 56999999999999999999998763 333444455566667777779999999977433 234556778
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
||+++ ||+|...--+ .....+.+++. ..+.|+++
T Consensus 84 ADvil-----------------------------------------fvVD~~~Git--~~D~~ia~~Lr---~~~kpviL 117 (444)
T COG1160 84 ADVIL-----------------------------------------FVVDGREGIT--PADEEIAKILR---RSKKPVIL 117 (444)
T ss_pred CCEEE-----------------------------------------EEEeCCCCCC--HHHHHHHHHHH---hcCCCEEE
Confidence 99999 9999875221 22223333333 25689999
Q ss_pred EEEcCCCCChhhHHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 169 LGNKRDLPNALDEKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 169 VgNK~Dl~~~~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+||+|-.+.++...-.-.+| -+.+.+||..+.+...+++.+-
T Consensus 118 vvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~ 161 (444)
T COG1160 118 VVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVL 161 (444)
T ss_pred EEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHH
Confidence 999999885544333333444 4699999999777777776654
No 211
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.48 E-value=4.5e-13 Score=133.62 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=98.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-----CCCCCceeeeEEEe--------------------eC------ceEE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-----QDMIPTVGFNMRKI--------------------TK------GNVT 66 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-----~~~~pTig~~~~~i--------------------~~------~~~~ 66 (329)
+++++|+++|..++|||||++++.+.... ....-|+...+..+ +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 56899999999999999999999753221 01112222221110 11 2467
Q ss_pred EEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHH
Q psy2970 67 IKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLE 146 (329)
Q Consensus 67 l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~ 146 (329)
+.+|||||+++|...+......+|+++ +|+|+++.....
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aI-----------------------------------------lVVDa~~g~~~~ 120 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGAL-----------------------------------------LVIAANEPCPQP 120 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEE-----------------------------------------EEEECCCCcccc
Confidence 899999999999777777777889999 999998642112
Q ss_pred HHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhH----HH---HHHHh---CCcEEEEeccchHHHHHHhhhhcC
Q psy2970 147 ASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE----KE---LIDRI---MIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 147 ~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~----~~---l~~~~---~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
...+.+..+ .. ....|+++++||+|+.+.++. ++ +.+.. +++++++||+++.+.+++++.+..
T Consensus 121 qt~e~l~~l-~~--~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~ 193 (406)
T TIGR03680 121 QTKEHLMAL-EI--IGIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEK 193 (406)
T ss_pred chHHHHHHH-HH--cCCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHH
Confidence 222222222 21 112468999999999864321 22 22222 568999999998888888877754
No 212
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.47 E-value=7.9e-13 Score=123.00 Aligned_cols=124 Identities=17% Similarity=0.191 Sum_probs=89.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC--------C------------CCCCCceeeeEEEeeCceEEEEEEecCCCccccch
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQF--------S------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~--------~------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~ 81 (329)
+|+++|.+|+|||||+++++...- . ....-|+...+..+..++.++.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999975211 0 00111233334456778899999999999999888
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
+..+++.+|+++ +|+|.++.... ....++..+..
T Consensus 81 ~~~~l~~aD~~I-----------------------------------------lVvd~~~g~~~-~~~~~~~~~~~---- 114 (237)
T cd04168 81 VERSLSVLDGAI-----------------------------------------LVISAVEGVQA-QTRILWRLLRK---- 114 (237)
T ss_pred HHHHHHHhCeEE-----------------------------------------EEEeCCCCCCH-HHHHHHHHHHH----
Confidence 888999999999 99999875432 33334443322
Q ss_pred CCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc
Q psy2970 162 IGIPILVLGNKRDLPNA---LDEKELIDRIMID 191 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~ 191 (329)
.++|+++++||+|+... ...+++.++++..
T Consensus 115 ~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~ 147 (237)
T cd04168 115 LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSD 147 (237)
T ss_pred cCCCEEEEEECccccCCCHHHHHHHHHHHHCCC
Confidence 47899999999999864 4466777777743
No 213
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.45 E-value=1.4e-12 Score=136.04 Aligned_cols=133 Identities=23% Similarity=0.295 Sum_probs=98.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--CCCCCC----------------CCCceeeeEEEeeCceEEEEEEecCCCccccchHH
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS--GQFSQD----------------MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWE 83 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~--~~~~~~----------------~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~ 83 (329)
+|+++|..++|||||+.+|+. +.+... ...|+......+..++.++.+|||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 699999999999999999985 322211 12333334445678889999999999999988888
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.+++.+|+++ +|+|+++. .......++..+.+ .+
T Consensus 83 ~~l~~aD~al-----------------------------------------LVVDa~~G-~~~qT~~~l~~a~~----~~ 116 (594)
T TIGR01394 83 RVLGMVDGVL-----------------------------------------LLVDASEG-PMPQTRFVLKKALE----LG 116 (594)
T ss_pred HHHHhCCEEE-----------------------------------------EEEeCCCC-CcHHHHHHHHHHHH----CC
Confidence 9999999999 99999763 24455566666544 46
Q ss_pred CcEEEEEEcCCCCChh------hHHHHH-------HHhCCcEEEEeccch
Q psy2970 164 IPILVLGNKRDLPNAL------DEKELI-------DRIMIDFWITLTLLI 200 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~------e~~~l~-------~~~~~~~~etSAk~~ 200 (329)
+|+++|+||+|+.++. +..++. +++.++++.+||+.+
T Consensus 117 ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g 166 (594)
T TIGR01394 117 LKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAG 166 (594)
T ss_pred CCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcC
Confidence 8999999999997541 222222 223568999999996
No 214
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.44 E-value=4.9e-13 Score=129.43 Aligned_cols=86 Identities=26% Similarity=0.453 Sum_probs=75.2
Q ss_pred CceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhc
Q psy2970 51 PTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLF 130 (329)
Q Consensus 51 pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (329)
||+|+....++.+++.+.+||++||...+..|.+++.++++++
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~ii------------------------------------- 189 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAII------------------------------------- 189 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEE-------------------------------------
Confidence 5555555566778899999999999999999999999999999
Q ss_pred ceeEEEEECCCc----------ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 131 QLIKYMVDAADT----------DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 131 ~~~~lV~Dvt~~----------~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|+|+++. +.+.+....++.+++.....++|++|++||.|+-.
T Consensus 190 ----fvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~ 242 (317)
T cd00066 190 ----FVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFE 242 (317)
T ss_pred ----EEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHH
Confidence 99999874 67889999999999988889999999999999743
No 215
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.43 E-value=5.6e-13 Score=130.50 Aligned_cols=87 Identities=24% Similarity=0.444 Sum_probs=76.3
Q ss_pred CCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhh
Q psy2970 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLL 129 (329)
Q Consensus 50 ~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (329)
.||+|+....+..++..+.+||++|+...+..|.+++.++++++
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~Ii------------------------------------ 212 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAII------------------------------------ 212 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEE------------------------------------
Confidence 35666666667778889999999999999999999999999999
Q ss_pred cceeEEEEECCC----------cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 130 FQLIKYMVDAAD----------TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 130 ~~~~~lV~Dvt~----------~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|+|+++ ...+++....++.+++.....++|++|++||.|+-.
T Consensus 213 -----FvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 213 -----FCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFE 265 (342)
T ss_pred -----EEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHH
Confidence 9999986 357889999999999988889999999999999854
No 216
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.43 E-value=9.2e-13 Score=120.37 Aligned_cols=139 Identities=17% Similarity=0.126 Sum_probs=89.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--CC-------------------------------CCCCCceeeeEEEeeCceEEEE
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ--FS-------------------------------QDMIPTVGFNMRKITKGNVTIK 68 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~--~~-------------------------------~~~~pTig~~~~~i~~~~~~l~ 68 (329)
+|+++|..++|||||+.+|+..- .. .....|+......+..++.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999995311 00 0111223333344667788999
Q ss_pred EEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCccc---H
Q psy2970 69 VWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK---L 145 (329)
Q Consensus 69 I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S---~ 145 (329)
+|||||+.++..........+|+++ +|+|+++... |
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i-----------------------------------------~VvDa~~~~~~~~~ 119 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAV-----------------------------------------LVVDARKGEFEAGF 119 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEE-----------------------------------------EEEECCCCcccccc
Confidence 9999999877666666677899999 9999987421 1
Q ss_pred H---HHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC----hh-------hHHHHHHHhC-----CcEEEEeccchHHHH
Q psy2970 146 E---ASRNELHALIEKPQLIGIPILVLGNKRDLPN----AL-------DEKELIDRIM-----IDFWITLTLLIRWCE 204 (329)
Q Consensus 146 ~---~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~----~~-------e~~~l~~~~~-----~~~~etSAk~~~~~~ 204 (329)
. .....+... .. ....|+++|+||+|+.. .. +++++.+.++ .+++++||+++.+.+
T Consensus 120 ~~~~~~~~~~~~~-~~--~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 120 EKGGQTREHALLA-RT--LGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccchHHHHHHH-HH--cCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 112222211 21 12368999999999973 21 1222334443 569999999976655
No 217
>PRK10218 GTP-binding protein; Provisional
Probab=99.42 E-value=4.6e-12 Score=132.43 Aligned_cols=136 Identities=22% Similarity=0.252 Sum_probs=97.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc--CCCCCCC------------CCceeeeE----EEeeCceEEEEEEecCCCccccch
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS--GQFSQDM------------IPTVGFNM----RKITKGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~--~~~~~~~------------~pTig~~~----~~i~~~~~~l~I~DtpG~e~~~~~ 81 (329)
--+|+++|..++|||||+++|+. +.+...+ .++.|..+ ..++.+++++.+|||||+.+|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 35899999999999999999986 3332211 12333332 346778899999999999999999
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
+..+++.+|+++ +|+|+++... ......+..+..
T Consensus 85 v~~~l~~aDg~I-----------------------------------------LVVDa~~G~~-~qt~~~l~~a~~---- 118 (607)
T PRK10218 85 VERVMSMVDSVL-----------------------------------------LVVDAFDGPM-PQTRFVTKKAFA---- 118 (607)
T ss_pred HHHHHHhCCEEE-----------------------------------------EEEecccCcc-HHHHHHHHHHHH----
Confidence 999999999999 9999986422 233333444332
Q ss_pred CCCcEEEEEEcCCCCChh---hHHHHHHH----------hCCcEEEEeccchH
Q psy2970 162 IGIPILVLGNKRDLPNAL---DEKELIDR----------IMIDFWITLTLLIR 201 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~~---e~~~l~~~----------~~~~~~etSAk~~~ 201 (329)
.++|+++++||+|+.++. ..+++.+. ..++++.+||+++.
T Consensus 119 ~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~ 171 (607)
T PRK10218 119 YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGI 171 (607)
T ss_pred cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCc
Confidence 478999999999997641 12222222 34678999999954
No 218
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.42 E-value=5.9e-13 Score=119.82 Aligned_cols=120 Identities=27% Similarity=0.396 Sum_probs=78.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE-e-eCceEEEEEEecCCCccccchHHH---HhhccceeE
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK-I-TKGNVTIKVWDIGGQPRFRSMWER---YCRGVNAIV 93 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~-i-~~~~~~l~I~DtpG~e~~~~~~~~---~~~~ad~iI 93 (329)
++-.|+++|++|+|||+|+.+|..+...+...+. ..+... + +...-.+.+.|+||+++.+..... +...+.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 3457999999999999999999998665332222 233221 2 234457899999999999875444 478899999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECC-CcccHHHHHHHHHHHHhCC--cCCCCcEEEEE
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA-DTDKLEASRNELHALIEKP--QLIGIPILVLG 170 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt-~~~S~~~~~~~l~~i~~~~--~~~~iPIiLVg 170 (329)
||+|.+ ++..+....+.+..++... ....+|++|++
T Consensus 81 -----------------------------------------fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIac 119 (181)
T PF09439_consen 81 -----------------------------------------FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIAC 119 (181)
T ss_dssp -----------------------------------------EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEE
T ss_pred -----------------------------------------EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEE
Confidence 999987 4556777777777776532 24679999999
Q ss_pred EcCCCCChhh
Q psy2970 171 NKRDLPNALD 180 (329)
Q Consensus 171 NK~Dl~~~~e 180 (329)
||.|+..+..
T Consensus 120 NK~Dl~~A~~ 129 (181)
T PF09439_consen 120 NKQDLFTAKP 129 (181)
T ss_dssp E-TTSTT---
T ss_pred eCccccccCC
Confidence 9999987643
No 219
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.42 E-value=2.8e-12 Score=116.33 Aligned_cols=109 Identities=17% Similarity=0.258 Sum_probs=77.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCC-----------CC------CceeeeE----EEe-----eCceEEEEEEecCCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQD-----------MI------PTVGFNM----RKI-----TKGNVTIKVWDIGGQ 75 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~-----------~~------pTig~~~----~~i-----~~~~~~l~I~DtpG~ 75 (329)
+|+++|..|+|||||++++........ +. ...|..+ ..+ +++.+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986433211 00 1111111 111 345688999999999
Q ss_pred ccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHH
Q psy2970 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHAL 155 (329)
Q Consensus 76 e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i 155 (329)
+++......++..+|+++ +|+|+++..+... ..++...
T Consensus 82 ~~f~~~~~~~~~~aD~~l-----------------------------------------lVvD~~~~~~~~~-~~~~~~~ 119 (213)
T cd04167 82 VNFMDEVAAALRLSDGVV-----------------------------------------LVVDVVEGVTSNT-ERLIRHA 119 (213)
T ss_pred cchHHHHHHHHHhCCEEE-----------------------------------------EEEECCCCCCHHH-HHHHHHH
Confidence 999888888999999999 9999987665432 3333433
Q ss_pred HhCCcCCCCcEEEEEEcCCCC
Q psy2970 156 IEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 156 ~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
.. .++|+++|+||+|+.
T Consensus 120 ~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 120 IL----EGLPIVLVINKIDRL 136 (213)
T ss_pred HH----cCCCEEEEEECcccC
Confidence 22 358999999999985
No 220
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.42 E-value=2.4e-12 Score=116.42 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=90.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--------CC----------CCCCCceeeeEEEeeCceEEEEEEecCCCccccch
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQ--------FS----------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~--------~~----------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~ 81 (329)
.++|+++|..++|||||+++|+... .. ....-|+......+..++.++.+.||||..++...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 5899999999999999999997530 00 01222333333345667778999999999887666
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
....+..+|+++ +|+|+...-. ......+..+ . .
T Consensus 82 ~~~~~~~~D~~i-----------------------------------------lVvda~~g~~-~~~~~~~~~~-~---~ 115 (195)
T cd01884 82 MITGAAQMDGAI-----------------------------------------LVVSATDGPM-PQTREHLLLA-R---Q 115 (195)
T ss_pred HHHHhhhCCEEE-----------------------------------------EEEECCCCCc-HHHHHHHHHH-H---H
Confidence 666777888888 9999876321 2222233333 2 2
Q ss_pred CCCc-EEEEEEcCCCCChh--------hHHHHHHHhC-----CcEEEEeccchHH
Q psy2970 162 IGIP-ILVLGNKRDLPNAL--------DEKELIDRIM-----IDFWITLTLLIRW 202 (329)
Q Consensus 162 ~~iP-IiLVgNK~Dl~~~~--------e~~~l~~~~~-----~~~~etSAk~~~~ 202 (329)
.++| ++++.||+|+.... +..++.++++ ++++.+||+++.+
T Consensus 116 ~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n 170 (195)
T cd01884 116 VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALE 170 (195)
T ss_pred cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccC
Confidence 3566 78899999996432 2333333333 6799999999443
No 221
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.41 E-value=4.7e-12 Score=118.08 Aligned_cols=149 Identities=22% Similarity=0.321 Sum_probs=99.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCceeeeEEEee-CceEEEEEEecCCCccccc-----hHHHHhhcccee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQ---DMIPTVGFNMRKIT-KGNVTIKVWDIGGQPRFRS-----MWERYCRGVNAI 92 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~---~~~pTig~~~~~i~-~~~~~l~I~DtpG~e~~~~-----~~~~~~~~ad~i 92 (329)
||+++|+++|||||+.+.++.+..+. ...||+.+....+. ...+.+++||.|||..+-. ..+..++++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999999876542 33488887777774 6677999999999976533 457788999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC--CcCCCCcEEEEE
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK--PQLIGIPILVLG 170 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~--~~~~~iPIiLVg 170 (329)
| ||+|+.+.+ +++....+.+.++. ...+++.+-|+.
T Consensus 81 I-----------------------------------------yV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfi 118 (232)
T PF04670_consen 81 I-----------------------------------------YVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFI 118 (232)
T ss_dssp E-----------------------------------------EEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEE
T ss_pred E-----------------------------------------EEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 9 999998543 33333333333322 125788999999
Q ss_pred EcCCCCChh-----------hHHHHHHHhC---CcEEEEeccchHHHHHHhhhhcC
Q psy2970 171 NKRDLPNAL-----------DEKELIDRIM---IDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 171 NK~Dl~~~~-----------e~~~l~~~~~---~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
+|.|+..++ +..+.....+ +.++.||.....+.+++-.-+..
T Consensus 119 HK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D~Sly~A~S~Ivq~ 174 (232)
T PF04670_consen 119 HKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWDESLYEAWSKIVQK 174 (232)
T ss_dssp E-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTSTHHHHHHHHHHHT
T ss_pred eecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcCcHHHHHHHHHHHH
Confidence 999997652 2333344455 78999999998888887766654
No 222
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.41 E-value=4.2e-12 Score=119.28 Aligned_cols=129 Identities=19% Similarity=0.132 Sum_probs=90.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC--------------------CCCCceeeeEEEeeCceEEEEEEecCCCccccch
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQ--------------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~--------------------~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~ 81 (329)
+|+++|.+|+|||||++++....... ....|+......+..++..+.+|||||..++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997422110 0122233333345667789999999999888777
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
+...++.+|+++ +|+|.++....... ..+..+. .
T Consensus 81 ~~~~l~~aD~~i-----------------------------------------~Vvd~~~g~~~~~~-~~~~~~~----~ 114 (268)
T cd04170 81 TRAALRAADAAL-----------------------------------------VVVSAQSGVEVGTE-KLWEFAD----E 114 (268)
T ss_pred HHHHHHHCCEEE-----------------------------------------EEEeCCCCCCHHHH-HHHHHHH----H
Confidence 888999999999 99999876543322 2223322 2
Q ss_pred CCCcEEEEEEcCCCCCh---hhHHHHHHHhCCcEEEEe
Q psy2970 162 IGIPILVLGNKRDLPNA---LDEKELIDRIMIDFWITL 196 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~~~etS 196 (329)
.++|+++|+||+|+... ...+++.+.++.+.+.++
T Consensus 115 ~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 115 AGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred cCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEE
Confidence 46899999999999875 335567777776655443
No 223
>KOG1707|consensus
Probab=99.41 E-value=9.3e-13 Score=134.55 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=110.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeE--EEeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~--~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.++.++|+++|+.||||||||-++...+|.+.-++-..... ..+..+.++..|.||+..+.-+......++.||++.
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~- 84 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC- 84 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE-
Confidence 35789999999999999999999999998754332221111 124566778999999987776777778899999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc--CCCCcEEEEEEc
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ--LIGIPILVLGNK 172 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~--~~~iPIiLVgNK 172 (329)
+||+++++++++.+...|..+++... -.++||||||||
T Consensus 85 ----------------------------------------lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK 124 (625)
T KOG1707|consen 85 ----------------------------------------LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNK 124 (625)
T ss_pred ----------------------------------------EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeec
Confidence 99999999999999875555555422 268999999999
Q ss_pred CCCCChh------hHHHHHHHhC-C-cEEEEeccc-hHHHHHHh
Q psy2970 173 RDLPNAL------DEKELIDRIM-I-DFWITLTLL-IRWCESFL 207 (329)
Q Consensus 173 ~Dl~~~~------e~~~l~~~~~-~-~~~etSAk~-~~~~~~~l 207 (329)
+|..... +...+.+++. + ..++|||++ .+..+.|.
T Consensus 125 ~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fY 168 (625)
T KOG1707|consen 125 SDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSELFY 168 (625)
T ss_pred cCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhh
Confidence 9997642 1233445553 3 378999999 44444443
No 224
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.40 E-value=1.6e-12 Score=136.02 Aligned_cols=145 Identities=17% Similarity=0.225 Sum_probs=98.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC---CCCCC--CCCceeeeEEEeeC-ceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG---QFSQD--MIPTVGFNMRKITK-GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~---~~~~~--~~pTig~~~~~i~~-~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
-|.++|..++|||||+++|++. .+.+. ...|+...+..+.. ++..+.+|||||+++|.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l-- 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL-- 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEE--
Confidence 4789999999999999999963 33322 35666665555432 3456899999999988655555678889999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc-EEEEEEcCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP-ILVLGNKRD 174 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgNK~D 174 (329)
+|+|+++.- .....+.+. ++.. .++| ++||+||+|
T Consensus 80 ---------------------------------------LVVda~eg~-~~qT~ehl~-il~~---lgi~~iIVVlNKiD 115 (614)
T PRK10512 80 ---------------------------------------LVVACDDGV-MAQTREHLA-ILQL---TGNPMLTVALTKAD 115 (614)
T ss_pred ---------------------------------------EEEECCCCC-cHHHHHHHH-HHHH---cCCCeEEEEEECCc
Confidence 999987631 112222222 2222 3455 579999999
Q ss_pred CCChhh-------HHHHHHHhC---CcEEEEeccchHHHHHHhhhhcC
Q psy2970 175 LPNALD-------EKELIDRIM---IDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 175 l~~~~e-------~~~l~~~~~---~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
+.++.. ..++.+..+ .+++++||+++.+.+.+++.+..
T Consensus 116 lv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~ 163 (614)
T PRK10512 116 RVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQ 163 (614)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 986422 223333333 68999999998888888877754
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.40 E-value=4.3e-12 Score=117.20 Aligned_cols=146 Identities=18% Similarity=0.211 Sum_probs=92.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCC----------------c-------eeeeE-----------------EEee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIP----------------T-------VGFNM-----------------RKIT 61 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~p----------------T-------ig~~~-----------------~~i~ 61 (329)
||+++|+.++|||||++++..+.+...... | +|.+. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999997665421110 0 11110 0112
Q ss_pred CceEEEEEEecCCCccccchHHHHhh--ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEEC
Q psy2970 62 KGNVTIKVWDIGGQPRFRSMWERYCR--GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139 (329)
Q Consensus 62 ~~~~~l~I~DtpG~e~~~~~~~~~~~--~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dv 139 (329)
..+..+.+.||||.++|.......+. .+|.++ +|+|+
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~l-----------------------------------------lVvda 119 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAM-----------------------------------------LVVAA 119 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEE-----------------------------------------EEEEC
Confidence 33467899999999887543332332 467777 99998
Q ss_pred CCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh----HHHHHHHhC--------------------------
Q psy2970 140 ADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD----EKELIDRIM-------------------------- 189 (329)
Q Consensus 140 t~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e----~~~l~~~~~-------------------------- 189 (329)
..... ......+..+. ..++|+++|.||+|+.++.+ .+++.+.+.
T Consensus 120 ~~g~~-~~d~~~l~~l~----~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~ 194 (224)
T cd04165 120 NAGII-GMTKEHLGLAL----ALNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSS 194 (224)
T ss_pred CCCCc-HHHHHHHHHHH----HcCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCc
Confidence 75432 22223333332 24689999999999876532 223333332
Q ss_pred ---CcEEEEeccchHHHHHHhhhhcCC
Q psy2970 190 ---IDFWITLTLLIRWCESFLHHFGSH 213 (329)
Q Consensus 190 ---~~~~etSAk~~~~~~~~l~~i~~~ 213 (329)
+++|.+||.++.+.+.+.+.+...
T Consensus 195 ~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 195 ERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred cccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 389999999988888888776543
No 226
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.40 E-value=3.3e-12 Score=133.10 Aligned_cols=109 Identities=20% Similarity=0.245 Sum_probs=78.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCceeeeEEEee------Cce-----E-----EEEEEecCCCccc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQD----MIPTVGFNMRKIT------KGN-----V-----TIKVWDIGGQPRF 78 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~----~~pTig~~~~~i~------~~~-----~-----~l~I~DtpG~e~~ 78 (329)
+...|+++|.+|+|||||++++.+..+... ..+++|..+...+ +.. . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 456799999999999999999987654322 2234554333211 111 1 2689999999999
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHH
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHAL 155 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i 155 (329)
..++...+..+|+++ +|+|+++ +.+++.+.. +
T Consensus 85 ~~~~~~~~~~aD~~I-----------------------------------------lVvDa~~g~~~qt~e~i~~----~ 119 (586)
T PRK04004 85 TNLRKRGGALADIAI-----------------------------------------LVVDINEGFQPQTIEAINI----L 119 (586)
T ss_pred HHHHHHhHhhCCEEE-----------------------------------------EEEECCCCCCHhHHHHHHH----H
Confidence 998888888999999 9999987 455544431 1
Q ss_pred HhCCcCCCCcEEEEEEcCCCC
Q psy2970 156 IEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 156 ~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
. ..++|+++++||+|+.
T Consensus 120 -~---~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 120 -K---RRKTPFVVAANKIDRI 136 (586)
T ss_pred -H---HcCCCEEEEEECcCCc
Confidence 2 2478999999999985
No 227
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.40 E-value=3.7e-12 Score=127.44 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=94.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC-----CCCCCceeeeEEEe--------------------eC-c-----eE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS-----QDMIPTVGFNMRKI--------------------TK-G-----NV 65 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~-----~~~~pTig~~~~~i--------------------~~-~-----~~ 65 (329)
.+..++|+++|..++|||||+.+|.+.... ....-|+...+... +. + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 356799999999999999999999653111 11223433322110 00 0 35
Q ss_pred EEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH
Q psy2970 66 TIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL 145 (329)
Q Consensus 66 ~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~ 145 (329)
.+.+|||||+++|..........+|+++ +|+|++++...
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~l-----------------------------------------lVVDa~~~~~~ 124 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAI-----------------------------------------LVIAANEPCPQ 124 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEE-----------------------------------------EEEECCCCCCC
Confidence 7899999999887554333444568888 99999864211
Q ss_pred HHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh-------HHHHHHHh---CCcEEEEeccchHHHHHHhhhhcC
Q psy2970 146 EASRNELHALIEKPQLIGIPILVLGNKRDLPNALD-------EKELIDRI---MIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 146 ~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e-------~~~l~~~~---~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
......+..+ +. ....|+++|+||+|+.+..+ ..++.+.. +.+++++||+++.+.+.+++.+..
T Consensus 125 ~~t~~~l~~l-~~--~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~ 198 (411)
T PRK04000 125 PQTKEHLMAL-DI--IGIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEE 198 (411)
T ss_pred hhHHHHHHHH-HH--cCCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHH
Confidence 1112222222 11 11246899999999976432 22222221 468999999998888887777654
No 228
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.39 E-value=5.9e-12 Score=119.79 Aligned_cols=147 Identities=20% Similarity=0.228 Sum_probs=86.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCC----------CCCceeeeEEE--e--eCceEEEEEEecCCCccccc---hH
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQD----------MIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS---MW 82 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~----------~~pTig~~~~~--i--~~~~~~l~I~DtpG~e~~~~---~~ 82 (329)
.++|+++|.+|+|||||+|++++..+... ..+|++..... + ++..+++.+|||||..+... .|
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 68999999999999999999998876432 35566554433 2 34457899999999644322 11
Q ss_pred -----------HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HH
Q psy2970 83 -----------ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RN 150 (329)
Q Consensus 83 -----------~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~ 150 (329)
..++.+...+. |. +.-.....+++++++|.+.. .+... ..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~-------------r~--------------~~~~d~rvh~~ly~i~~~~~-~l~~~D~~ 135 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIK-------------RN--------------PRIPDTRVHACLYFIEPTGH-GLKPLDIE 135 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc-------------cc--------------ccCCCCceEEEEEEEeCCCC-CCCHHHHH
Confidence 11111111111 00 00001123455588887642 22222 34
Q ss_pred HHHHHHhCCcCCCCcEEEEEEcCCCCChh-------hHHHHHHHhCCcEEEEeccc
Q psy2970 151 ELHALIEKPQLIGIPILVLGNKRDLPNAL-------DEKELIDRIMIDFWITLTLL 199 (329)
Q Consensus 151 ~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~-------e~~~l~~~~~~~~~etSAk~ 199 (329)
.++.+. .++|+++|+||+|+.... ...+.++..+++++......
T Consensus 136 ~lk~l~-----~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 136 FMKRLS-----KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHh-----ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 444442 258999999999996642 34556667778877765533
No 229
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.37 E-value=1.1e-11 Score=101.34 Aligned_cols=104 Identities=22% Similarity=0.268 Sum_probs=68.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEeeCceEEEEEEecCCCccccch---------HHHHhhcc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM---------WERYCRGV 89 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~---------~~~~~~~a 89 (329)
+|+++|.+|||||||+|+|++.+.. .....|....+..+......+.++||||...-... ....+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 6899999999999999999986432 22233444444445566777789999997542111 12223567
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|.++ +|+|.+++.. +.....+.++ . .+.|+++|
T Consensus 81 d~ii-----------------------------------------~vv~~~~~~~-~~~~~~~~~l----~-~~~~~i~v 113 (116)
T PF01926_consen 81 DLII-----------------------------------------YVVDASNPIT-EDDKNILREL----K-NKKPIILV 113 (116)
T ss_dssp SEEE-----------------------------------------EEEETTSHSH-HHHHHHHHHH----H-TTSEEEEE
T ss_pred CEEE-----------------------------------------EEEECCCCCC-HHHHHHHHHH----h-cCCCEEEE
Confidence 7777 9999777321 2333333444 2 57899999
Q ss_pred EEc
Q psy2970 170 GNK 172 (329)
Q Consensus 170 gNK 172 (329)
.||
T Consensus 114 ~NK 116 (116)
T PF01926_consen 114 LNK 116 (116)
T ss_dssp EES
T ss_pred EcC
Confidence 998
No 230
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.37 E-value=5.3e-12 Score=126.40 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=97.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEeeCceEEEEEEecCCCcc----------ccch-HHHH
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRKITKGNVTIKVWDIGGQPR----------FRSM-WERY 85 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~----------~~~~-~~~~ 85 (329)
.+||+++|.||||||||+|++++++-. .....|...-...++.++-++.+.||+|..+ |... ....
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a 257 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA 257 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence 499999999999999999999987642 2222333333334677788889999999543 2221 2345
Q ss_pred hhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc
Q psy2970 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP 165 (329)
Q Consensus 86 ~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP 165 (329)
++.+|.++ +|+|++.+-+ +....+..+.. ..+.+
T Consensus 258 I~~a~vvl-----------------------------------------lviDa~~~~~--~qD~~ia~~i~---~~g~~ 291 (444)
T COG1160 258 IERADVVL-----------------------------------------LVIDATEGIS--EQDLRIAGLIE---EAGRG 291 (444)
T ss_pred HhhcCEEE-----------------------------------------EEEECCCCch--HHHHHHHHHHH---HcCCC
Confidence 56677777 9999997643 22222222222 35789
Q ss_pred EEEEEEcCCCCCh--hhHHH----HHHHhC----CcEEEEeccchHHHHHHhhhhc
Q psy2970 166 ILVLGNKRDLPNA--LDEKE----LIDRIM----IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 166 IiLVgNK~Dl~~~--~e~~~----l~~~~~----~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+++|.||.|+.+. ...++ +..++. .+.+.+||+++.....+++.+.
T Consensus 292 ~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~ 347 (444)
T COG1160 292 IVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIK 347 (444)
T ss_pred eEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHH
Confidence 9999999998664 22222 333332 5789999999777777766653
No 231
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.35 E-value=1.3e-11 Score=119.82 Aligned_cols=71 Identities=24% Similarity=0.410 Sum_probs=52.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCC------CCCCCceeeeEEE-------------------eeC-ceEEEEEEecCCC-
Q psy2970 23 LTLVGLQCSGKTTFVNVIASGQFS------QDMIPTVGFNMRK-------------------ITK-GNVTIKVWDIGGQ- 75 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~~~~------~~~~pTig~~~~~-------------------i~~-~~~~l~I~DtpG~- 75 (329)
|.++|.||||||||+|++++.+.. +.+.|++|..+.. .++ +.+++++|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987643 3445677655532 112 4478999999998
Q ss_pred ---ccccchHHH---HhhccceeE
Q psy2970 76 ---PRFRSMWER---YCRGVNAIV 93 (329)
Q Consensus 76 ---e~~~~~~~~---~~~~ad~iI 93 (329)
+.++.+... .+++||+++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii 104 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALI 104 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEE
Confidence 445555444 489999999
No 232
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.34 E-value=7.8e-12 Score=112.36 Aligned_cols=74 Identities=14% Similarity=0.280 Sum_probs=45.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceee-----eEEEee-CceEEEEEEecCCCccccchHHHH-----hhc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF-----NMRKIT-KGNVTIKVWDIGGQPRFRSMWERY-----CRG 88 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~-----~~~~i~-~~~~~l~I~DtpG~e~~~~~~~~~-----~~~ 88 (329)
++||+++|++|||||||+|++.+........++++. ....+. .....+.+|||||..........+ +.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 479999999999999999999986553322222221 001111 112368999999976543333333 344
Q ss_pred cceeE
Q psy2970 89 VNAIV 93 (329)
Q Consensus 89 ad~iI 93 (329)
+|.++
T Consensus 81 ~d~~l 85 (197)
T cd04104 81 YDFFI 85 (197)
T ss_pred cCEEE
Confidence 55555
No 233
>PRK12736 elongation factor Tu; Reviewed
Probab=99.32 E-value=3.8e-11 Score=119.39 Aligned_cols=138 Identities=18% Similarity=0.177 Sum_probs=91.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCC-------C-----------CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQF-------S-----------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~-------~-----------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.++.++|+++|..++|||||+++|++... . ....-|+......++.++..+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 46789999999999999999999975210 0 01223443333345556678899999999877
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
..........+|+++ +|+|+++... ....+.+..+.
T Consensus 89 ~~~~~~~~~~~d~~l-----------------------------------------lVvd~~~g~~-~~t~~~~~~~~-- 124 (394)
T PRK12736 89 VKNMITGAAQMDGAI-----------------------------------------LVVAATDGPM-PQTREHILLAR-- 124 (394)
T ss_pred HHHHHHHHhhCCEEE-----------------------------------------EEEECCCCCc-hhHHHHHHHHH--
Confidence 554444556778888 9999876321 22223333222
Q ss_pred CcCCCCc-EEEEEEcCCCCChh--------hHHHHHHHhC-----CcEEEEeccch
Q psy2970 159 PQLIGIP-ILVLGNKRDLPNAL--------DEKELIDRIM-----IDFWITLTLLI 200 (329)
Q Consensus 159 ~~~~~iP-IiLVgNK~Dl~~~~--------e~~~l~~~~~-----~~~~etSAk~~ 200 (329)
..++| +++++||+|+.+.. +..++.+..+ ++++.+||+++
T Consensus 125 --~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g 178 (394)
T PRK12736 125 --QVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKA 178 (394)
T ss_pred --HcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeecccc
Confidence 23677 67899999997532 2233333444 57999999985
No 234
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.32 E-value=2e-11 Score=121.21 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=91.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcC-----C--C---------C--CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASG-----Q--F---------S--QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~-----~--~---------~--~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.++.++|+++|..++|||||+++|++. + + . ....-|+......++.++.++.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 467899999999999999999999732 0 0 0 11233444444445666778999999999987
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
..........+|+++ +|+|+.+... ....+.+..+.
T Consensus 89 ~~~~~~~~~~~D~~i-----------------------------------------lVvda~~g~~-~qt~e~l~~~~-- 124 (394)
T TIGR00485 89 VKNMITGAAQMDGAI-----------------------------------------LVVSATDGPM-PQTREHILLAR-- 124 (394)
T ss_pred HHHHHHHHhhCCEEE-----------------------------------------EEEECCCCCc-HHHHHHHHHHH--
Confidence 554444456678888 9999986321 12222222222
Q ss_pred CcCCCCcEE-EEEEcCCCCChh--------hHHHHHHHhC-----CcEEEEeccch
Q psy2970 159 PQLIGIPIL-VLGNKRDLPNAL--------DEKELIDRIM-----IDFWITLTLLI 200 (329)
Q Consensus 159 ~~~~~iPIi-LVgNK~Dl~~~~--------e~~~l~~~~~-----~~~~etSAk~~ 200 (329)
..++|.+ +++||+|+.+.. +.+++.+.++ ++++++||+++
T Consensus 125 --~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g 178 (394)
T TIGR00485 125 --QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKA 178 (394)
T ss_pred --HcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccc
Confidence 2356755 689999997642 2444555554 68999999873
No 235
>KOG1490|consensus
Probab=99.32 E-value=3.4e-12 Score=128.74 Aligned_cols=146 Identities=17% Similarity=0.105 Sum_probs=109.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCce-eeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTV-GFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTi-g~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
.-.++++|.||||||||+|.++..+.. +.|..|+ +.-+..++++...+++.||||..+.-. ++-+.+
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~pl------EdrN~I----- 236 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPE------EDRNII----- 236 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcch------hhhhHH-----
Confidence 347999999999999999999988765 3444443 344556889999999999999654311 111111
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc--ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT--DKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~--~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
.-|+.-|++|++.+|+|+.|++.. .|.+....+++.+.. -+.+.|.|+|+||+|+
T Consensus 237 ---------------------EmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKp--LFaNK~~IlvlNK~D~ 293 (620)
T KOG1490|consen 237 ---------------------EMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKP--LFANKVTILVLNKIDA 293 (620)
T ss_pred ---------------------HHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHH--HhcCCceEEEeecccc
Confidence 112334889999999999999865 678888899998844 4789999999999998
Q ss_pred CChh--------hHHHHHHHhCCcEEEEeccc
Q psy2970 176 PNAL--------DEKELIDRIMIDFWITLTLL 199 (329)
Q Consensus 176 ~~~~--------e~~~l~~~~~~~~~etSAk~ 199 (329)
...+ -.+.+.++-+++++++|..+
T Consensus 294 m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~ 325 (620)
T KOG1490|consen 294 MRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQ 325 (620)
T ss_pred cCccccCHHHHHHHHHHHhccCceEEEecccc
Confidence 6541 14456666678999999988
No 236
>PRK13351 elongation factor G; Reviewed
Probab=99.32 E-value=2.3e-11 Score=128.65 Aligned_cols=127 Identities=21% Similarity=0.142 Sum_probs=95.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC-------------CC-------CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ-------------FS-------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~-------------~~-------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
+..+|+++|..|+|||||+++|.... .. ..+..|+......+..++..+.+|||||+.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 45799999999999999999997421 00 12345666556667778899999999999999
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
...+..+++.+|+++ +|+|.++......... +..+.
T Consensus 87 ~~~~~~~l~~aD~~i-----------------------------------------lVvd~~~~~~~~~~~~-~~~~~-- 122 (687)
T PRK13351 87 TGEVERSLRVLDGAV-----------------------------------------VVFDAVTGVQPQTETV-WRQAD-- 122 (687)
T ss_pred HHHHHHHHHhCCEEE-----------------------------------------EEEeCCCCCCHHHHHH-HHHHH--
Confidence 888899999999999 9999988765554333 33332
Q ss_pred CcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc
Q psy2970 159 PQLIGIPILVLGNKRDLPNA---LDEKELIDRIMID 191 (329)
Q Consensus 159 ~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~ 191 (329)
..++|+++|+||+|+... ...+++.+.++..
T Consensus 123 --~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 156 (687)
T PRK13351 123 --RYGIPRLIFINKMDRVGADLFKVLEDIEERFGKR 156 (687)
T ss_pred --hcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
Confidence 247899999999999875 3456666677654
No 237
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.30 E-value=1.6e-11 Score=116.55 Aligned_cols=132 Identities=17% Similarity=0.107 Sum_probs=90.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--CCCC------------------CCCCCceeeeEEEeeCceEEEEEEecCCCccccch
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS--GQFS------------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~--~~~~------------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~ 81 (329)
+|+++|.+|+|||||++++.. +... ....-|+......+..++.++.++||||..++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999963 1110 01112333333445667889999999999988888
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
+...++.+|+++ +|+|..+... ......+..+. .
T Consensus 81 ~~~~l~~aD~ai-----------------------------------------lVVDa~~g~~-~~t~~~~~~~~----~ 114 (270)
T cd01886 81 VERSLRVLDGAV-----------------------------------------AVFDAVAGVE-PQTETVWRQAD----R 114 (270)
T ss_pred HHHHHHHcCEEE-----------------------------------------EEEECCCCCC-HHHHHHHHHHH----H
Confidence 888999999999 9999876432 12223333332 2
Q ss_pred CCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc----EEEEeccc
Q psy2970 162 IGIPILVLGNKRDLPNA---LDEKELIDRIMID----FWITLTLL 199 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~----~~etSAk~ 199 (329)
.++|++++.||+|+.+. .-.+++.+.++.. .+.+|+..
T Consensus 115 ~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa~~ 159 (270)
T cd01886 115 YNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGEED 159 (270)
T ss_pred cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccccCC
Confidence 56899999999999764 2245666666642 56667664
No 238
>PRK12735 elongation factor Tu; Reviewed
Probab=99.30 E-value=4e-11 Score=119.30 Aligned_cols=138 Identities=18% Similarity=0.189 Sum_probs=90.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcC-------CCC-----------CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASG-------QFS-----------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~-------~~~-----------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.+..++|+++|.+++|||||+++|+.. .+. ....-|+......+..++.++.++||||+++|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 467799999999999999999999851 110 01122333333345556678899999999877
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
..........+|+++ +|+|+.+... ....+.+..+ .
T Consensus 89 ~~~~~~~~~~aD~~l-----------------------------------------lVvda~~g~~-~qt~e~l~~~-~- 124 (396)
T PRK12735 89 VKNMITGAAQMDGAI-----------------------------------------LVVSAADGPM-PQTREHILLA-R- 124 (396)
T ss_pred HHHHHhhhccCCEEE-----------------------------------------EEEECCCCCc-hhHHHHHHHH-H-
Confidence 544445566778888 9999876321 2222333322 2
Q ss_pred CcCCCCcEE-EEEEcCCCCChh--------hHHHHHHHhC-----CcEEEEeccch
Q psy2970 159 PQLIGIPIL-VLGNKRDLPNAL--------DEKELIDRIM-----IDFWITLTLLI 200 (329)
Q Consensus 159 ~~~~~iPIi-LVgNK~Dl~~~~--------e~~~l~~~~~-----~~~~etSAk~~ 200 (329)
..++|.+ ++.||+|+.+.. +.+++.+.++ ++++++||+++
T Consensus 125 --~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g 178 (396)
T PRK12735 125 --QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKA 178 (396)
T ss_pred --HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhcc
Confidence 2467855 579999997431 3444455543 67999999985
No 239
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.29 E-value=1.7e-11 Score=126.42 Aligned_cols=127 Identities=20% Similarity=0.219 Sum_probs=89.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc--CCCC---------------CC-------CCCceeeeEEEeeCceEEEEEEecCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS--GQFS---------------QD-------MIPTVGFNMRKITKGNVTIKVWDIGG 74 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~--~~~~---------------~~-------~~pTig~~~~~i~~~~~~l~I~DtpG 74 (329)
+.-+|+++|.+++|||||+++|+. +... .+ ...|+......++.+++++.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456999999999999999999963 1110 00 01122233334677889999999999
Q ss_pred CccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHH
Q psy2970 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHA 154 (329)
Q Consensus 75 ~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~ 154 (329)
+++|......+++.+|+++ +|+|+++.-. .....++..
T Consensus 89 ~~df~~~~~~~l~~aD~aI-----------------------------------------lVvDa~~gv~-~~t~~l~~~ 126 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSAL-----------------------------------------MVIDAAKGVE-PQTRKLMEV 126 (526)
T ss_pred chhhHHHHHHHHHHCCEEE-----------------------------------------EEEecCCCCC-HHHHHHHHH
Confidence 9999887777899999999 9999987422 122333332
Q ss_pred HHhCCcCCCCcEEEEEEcCCCCChh---hHHHHHHHhCCc
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLPNAL---DEKELIDRIMID 191 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~~~~---e~~~l~~~~~~~ 191 (329)
. . ..++|+++++||+|+.... -.+++.+.++.+
T Consensus 127 ~-~---~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~ 162 (526)
T PRK00741 127 C-R---LRDTPIFTFINKLDRDGREPLELLDEIEEVLGIA 162 (526)
T ss_pred H-H---hcCCCEEEEEECCcccccCHHHHHHHHHHHhCCC
Confidence 2 2 3579999999999997653 246677777754
No 240
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.29 E-value=2.8e-11 Score=105.13 Aligned_cols=131 Identities=16% Similarity=0.220 Sum_probs=88.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCc----cccchHHHHhhccceeEeecc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQP----RFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e----~~~~~~~~~~~~ad~iI~~~~ 97 (329)
||+++|+.|+|||||+++|.+.+.. |..|-...+. =.+.||||.- .+..-......+||.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~~~--------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~---- 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIEYY--------DNTIDTPGEYIENPRFYHALIVTAQDADVVL---- 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeEec--------ccEEECChhheeCHHHHHHHHHHHhhCCEEE----
Confidence 7999999999999999999987753 3333333332 1368999942 11222233445677777
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
++.|.+++.+. ..-.+... -+.|+|=|.||+|++.
T Consensus 69 -------------------------------------ll~dat~~~~~--~pP~fa~~------f~~pvIGVITK~Dl~~ 103 (143)
T PF10662_consen 69 -------------------------------------LLQDATEPRSV--FPPGFASM------FNKPVIGVITKIDLPS 103 (143)
T ss_pred -------------------------------------EEecCCCCCcc--CCchhhcc------cCCCEEEEEECccCcc
Confidence 99999986531 11111112 3579999999999992
Q ss_pred -h---hhHHHHHHHhCCc-EEEEeccchHHHHHHhhhhc
Q psy2970 178 -A---LDEKELIDRIMID-FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 178 -~---~e~~~l~~~~~~~-~~etSAk~~~~~~~~l~~i~ 211 (329)
+ +.++++.+.-|+. .|++|+.++..++++.+.+.
T Consensus 104 ~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 104 DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 2 3455566666764 89999999999999877653
No 241
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.28 E-value=3.7e-11 Score=111.09 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=77.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC--CCC----------------CCCceeeeEE--Eee--------CceEEEEEEecC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQF--SQD----------------MIPTVGFNMR--KIT--------KGNVTIKVWDIG 73 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~--~~~----------------~~pTig~~~~--~i~--------~~~~~l~I~Dtp 73 (329)
+|+++|..++|||||+.+|+...- ... ..-|+..... ..+ ++.+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999974321 100 0111111111 112 347899999999
Q ss_pred CCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHH
Q psy2970 74 GQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELH 153 (329)
Q Consensus 74 G~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~ 153 (329)
|+++|......+++.+|+++ +|+|+++..+.+. ...+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~i-----------------------------------------lVvD~~~g~~~~t-~~~l~ 119 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGAL-----------------------------------------VVVDAVEGVCVQT-ETVLR 119 (222)
T ss_pred CccccHHHHHHHHHhcCeeE-----------------------------------------EEEECCCCCCHHH-HHHHH
Confidence 99999998899999999999 9999987654433 33333
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
.... .++|+++|+||+|+.
T Consensus 120 ~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 120 QALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred HHHH----cCCCEEEEEECCCcc
Confidence 3322 357999999999986
No 242
>KOG1423|consensus
Probab=99.26 E-value=8.1e-11 Score=113.20 Aligned_cols=159 Identities=16% Similarity=0.177 Sum_probs=100.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEE-EeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMR-KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~-~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+.|+++|.||||||||.|++.+.+.. .....|+..... -+..++.++.++||||.-.-+.........+ +
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s--~-- 145 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMS--V-- 145 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHH--h--
Confidence 35689999999999999999999998875 223344444443 4688999999999999643222211111100 1
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH--HHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL--EASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~--~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
.|.+..+...+|++++|+|++++... ..+..-+++. .++|-++|.||
T Consensus 146 -------------------------lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnk 194 (379)
T KOG1423|consen 146 -------------------------LQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNK 194 (379)
T ss_pred -------------------------hhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccc
Confidence 12223344555666699999974332 1222222222 56888999999
Q ss_pred CCCCChh-------------h----HHHHHHHhC-Cc----------------EEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNAL-------------D----EKELIDRIM-ID----------------FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~~-------------e----~~~l~~~~~-~~----------------~~etSAk~~~~~~~~l~~i~ 211 (329)
+|..... + .-++.+++- .+ +|.+||+.++..+++.+.+-
T Consensus 195 id~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLm 267 (379)
T KOG1423|consen 195 IDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLM 267 (379)
T ss_pred hhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHH
Confidence 9986541 0 112333332 33 79999999999998887763
No 243
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.26 E-value=2e-10 Score=104.59 Aligned_cols=148 Identities=16% Similarity=0.254 Sum_probs=97.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC----CCCCCCceeeeEEEeeCceEEEEEEecCCC----------ccccchHH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF----SQDMIPTVGFNMRKITKGNVTIKVWDIGGQ----------PRFRSMWE 83 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~----~~~~~pTig~~~~~i~~~~~~l~I~DtpG~----------e~~~~~~~ 83 (329)
.....|+++|.+|||||||||.+++++- +..+..|...++..++.+ +.+.|.||- +.+..+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 3456999999999999999999999662 334455666677666555 789999993 44555566
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.|++.-..+. .+++++|+..+-. .....+-+.+. ..+
T Consensus 99 ~YL~~R~~L~--------------------------------------~vvlliD~r~~~~--~~D~em~~~l~---~~~ 135 (200)
T COG0218 99 EYLEKRANLK--------------------------------------GVVLLIDARHPPK--DLDREMIEFLL---ELG 135 (200)
T ss_pred HHHhhchhhe--------------------------------------EEEEEEECCCCCc--HHHHHHHHHHH---HcC
Confidence 6776532222 2338889865432 22223333333 258
Q ss_pred CcEEEEEEcCCCCChhh----HHHHHHHhCC----c--EEEEeccchHHHHHHhhhhc
Q psy2970 164 IPILVLGNKRDLPNALD----EKELIDRIMI----D--FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~e----~~~l~~~~~~----~--~~etSAk~~~~~~~~l~~i~ 211 (329)
+|++|++||+|..+..+ ...++++++. . .+..|+....+.+++...+.
T Consensus 136 i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~ 193 (200)
T COG0218 136 IPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKIL 193 (200)
T ss_pred CCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHH
Confidence 99999999999887633 3556655542 2 56677777666777665553
No 244
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.25 E-value=3.5e-11 Score=117.02 Aligned_cols=155 Identities=26% Similarity=0.366 Sum_probs=96.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCCCC-ceeeeEEEee-CceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS-QDMIP-TVGFNMRKIT-KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~-~~~~p-Tig~~~~~i~-~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
-|-+||.||+|||||++.+...+.. ..|.- |+-.+.--+. ...-.+.+-|.||... .|.-=. ++|+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIE----------GAs~G~-GLG~ 229 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIE----------GASEGV-GLGL 229 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCccccc----------ccccCC-CccH
Confidence 3568999999999999999987653 23332 2222222222 4455688999999532 222222 3444
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCccc---HHHHHHHHHHHHhC-CcCCCCcEEEEEEcCC
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK---LEASRNELHALIEK-PQLIGIPILVLGNKRD 174 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S---~~~~~~~l~~i~~~-~~~~~iPIiLVgNK~D 174 (329)
.++ +|+.|+..++ .|+|++..+. .+.......++... ....+.|.+||+||+|
T Consensus 230 ~FL-rHIERt~vL~----------------------hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD 286 (369)
T COG0536 230 RFL-RHIERTRVLL----------------------HVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKID 286 (369)
T ss_pred HHH-HHHHhhheeE----------------------EEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccC
Confidence 444 6777776666 8999986542 44544444444432 3457889999999999
Q ss_pred CCCh-hhHHHHHHHh----CCc-EEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-LDEKELIDRI----MID-FWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-~e~~~l~~~~----~~~-~~etSAk~~~~~~~~l~~i 210 (329)
+... ++.+.+++.+ +.. ++.+||.+...++.+...+
T Consensus 287 ~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~ 328 (369)
T COG0536 287 LPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRAL 328 (369)
T ss_pred CCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHH
Confidence 6544 5555555444 332 2229999966666665544
No 245
>CHL00071 tufA elongation factor Tu
Probab=99.25 E-value=4.7e-11 Score=119.26 Aligned_cols=138 Identities=20% Similarity=0.216 Sum_probs=91.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC----------------CC--CCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS----------------QD--MIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~----------------~~--~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.+..++|+++|.+++|||||+++|++.... .. ..-|+......+..++.++.+.||||..+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 467899999999999999999999863110 00 112222223335556678889999998877
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
.......+..+|+++ +|+|+.+.-. ......+..+ .
T Consensus 89 ~~~~~~~~~~~D~~i-----------------------------------------lVvda~~g~~-~qt~~~~~~~-~- 124 (409)
T CHL00071 89 VKNMITGAAQMDGAI-----------------------------------------LVVSAADGPM-PQTKEHILLA-K- 124 (409)
T ss_pred HHHHHHHHHhCCEEE-----------------------------------------EEEECCCCCc-HHHHHHHHHH-H-
Confidence 555555677888888 9999875321 2222333322 2
Q ss_pred CcCCCCc-EEEEEEcCCCCChh--------hHHHHHHHhC-----CcEEEEeccch
Q psy2970 159 PQLIGIP-ILVLGNKRDLPNAL--------DEKELIDRIM-----IDFWITLTLLI 200 (329)
Q Consensus 159 ~~~~~iP-IiLVgNK~Dl~~~~--------e~~~l~~~~~-----~~~~etSAk~~ 200 (329)
..++| ++++.||+|+.+.. ++.++.+..+ ++++.+||.++
T Consensus 125 --~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g 178 (409)
T CHL00071 125 --QVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLA 178 (409)
T ss_pred --HcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhc
Confidence 24678 77899999998642 2333444443 67999999884
No 246
>COG2262 HflX GTPases [General function prediction only]
Probab=99.23 E-value=1.2e-10 Score=115.52 Aligned_cols=148 Identities=20% Similarity=0.207 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEeeCc-eEEEEEEecCCCccc--cchHH------HHhhcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKITKG-NVTIKVWDIGGQPRF--RSMWE------RYCRGV 89 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i~~~-~~~l~I~DtpG~e~~--~~~~~------~~~~~a 89 (329)
..|.++|..|+|||||+|++++.... .....|.....+.+... +..+.+-||.|..+- +.+.. ....++
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~a 272 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEA 272 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcC
Confidence 58999999999999999999976543 44456666666665544 578889999996432 11221 134578
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|.++ .|+|+++|...+.+.. ..+++......++|+++|
T Consensus 273 Dlll-----------------------------------------hVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v 310 (411)
T COG2262 273 DLLL-----------------------------------------HVVDASDPEILEKLEA-VEDVLAEIGADEIPIILV 310 (411)
T ss_pred CEEE-----------------------------------------EEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEE
Confidence 8888 9999999954444433 333444434567999999
Q ss_pred EEcCCCCChhh-HHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALD-EKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e-~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.||+|+....+ ...+..... ..+.+||+++.+++.+...+.
T Consensus 311 ~NKiD~~~~~~~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~ 352 (411)
T COG2262 311 LNKIDLLEDEEILAELERGSP-NPVFISAKTGEGLDLLRERII 352 (411)
T ss_pred EecccccCchhhhhhhhhcCC-CeEEEEeccCcCHHHHHHHHH
Confidence 99999776544 333333332 589999999888888877664
No 247
>KOG0082|consensus
Probab=99.23 E-value=1.9e-11 Score=119.86 Aligned_cols=87 Identities=23% Similarity=0.458 Sum_probs=74.9
Q ss_pred CCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhh
Q psy2970 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLL 129 (329)
Q Consensus 50 ~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (329)
.||.|+.-..++.++..+.++|++||..-+..|.+++.++++++
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~avi------------------------------------ 223 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVI------------------------------------ 223 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEE------------------------------------
Confidence 46677777778888899999999999999999999999999999
Q ss_pred cceeEEEEECCC----------cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 130 FQLIKYMVDAAD----------TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 130 ~~~~~lV~Dvt~----------~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|+++++ .+.+.+...++..+.+.+++.+++++|++||.||-.
T Consensus 224 -----F~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFe 276 (354)
T KOG0082|consen 224 -----FCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFE 276 (354)
T ss_pred -----EEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHH
Confidence 5555543 356788899999999999999999999999999844
No 248
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.22 E-value=1.4e-10 Score=118.10 Aligned_cols=148 Identities=14% Similarity=0.088 Sum_probs=92.8
Q ss_pred HHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCC--CCC---------------------------------CCCCceeee
Q psy2970 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQ--FSQ---------------------------------DMIPTVGFN 56 (329)
Q Consensus 12 ~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~--~~~---------------------------------~~~pTig~~ 56 (329)
......+..++|+++|..++|||||+.+|+... ... ...-|+...
T Consensus 19 ~~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~ 98 (474)
T PRK05124 19 LHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVA 98 (474)
T ss_pred HhhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEee
Confidence 333345788999999999999999999996421 110 011233444
Q ss_pred EEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEE
Q psy2970 57 MRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYM 136 (329)
Q Consensus 57 ~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV 136 (329)
+..+..++.++.++||||+++|..........+|+++ +|
T Consensus 99 ~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~al-----------------------------------------lV 137 (474)
T PRK05124 99 YRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAI-----------------------------------------LL 137 (474)
T ss_pred EEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEE-----------------------------------------EE
Confidence 4456677788999999999888554444568888888 99
Q ss_pred EECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh--hh-------HHHHHHHhC----CcEEEEeccchHHH
Q psy2970 137 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LD-------EKELIDRIM----IDFWITLTLLIRWC 203 (329)
Q Consensus 137 ~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~--~e-------~~~l~~~~~----~~~~etSAk~~~~~ 203 (329)
+|+.+.-. ...... ..+.... ...|++|++||+|+.+. .. ...+.+.++ .+++.+||+++.++
T Consensus 138 VDa~~G~~-~qt~~~-~~l~~~l--g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni 213 (474)
T PRK05124 138 IDARKGVL-DQTRRH-SFIATLL--GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNV 213 (474)
T ss_pred EECCCCcc-ccchHH-HHHHHHh--CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCc
Confidence 99875321 101111 1111111 12478999999999742 11 122223333 67999999995554
Q ss_pred H
Q psy2970 204 E 204 (329)
Q Consensus 204 ~ 204 (329)
.
T Consensus 214 ~ 214 (474)
T PRK05124 214 V 214 (474)
T ss_pred c
Confidence 3
No 249
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.22 E-value=1.4e-10 Score=119.65 Aligned_cols=127 Identities=18% Similarity=0.236 Sum_probs=86.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc--CCCCC----------------------CCCCceeeeEEEeeCceEEEEEEecC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS--GQFSQ----------------------DMIPTVGFNMRKITKGNVTIKVWDIG 73 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~--~~~~~----------------------~~~pTig~~~~~i~~~~~~l~I~Dtp 73 (329)
.+..+|+++|.+++|||||+++++. +.... ...-|+......++.+++.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999852 21110 00112222233467888999999999
Q ss_pred CCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHH
Q psy2970 74 GQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELH 153 (329)
Q Consensus 74 G~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~ 153 (329)
|+.+|.......++.+|+++ +|+|.++.- ......++.
T Consensus 89 G~~df~~~~~~~l~~aD~aI-----------------------------------------lVvDa~~gv-~~~t~~l~~ 126 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCL-----------------------------------------MVIDAAKGV-ETRTRKLME 126 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEE-----------------------------------------EEEECCCCC-CHHHHHHHH
Confidence 99988877777889999999 999998631 112223332
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCCCh--hh-HHHHHHHhCC
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLPNA--LD-EKELIDRIMI 190 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~~~--~e-~~~l~~~~~~ 190 (329)
..+ ..++|+++++||+|+... .+ .+++.+.++.
T Consensus 127 -~~~---~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~ 162 (527)
T TIGR00503 127 -VTR---LRDTPIFTFMNKLDRDIRDPLELLDEVENELKI 162 (527)
T ss_pred -HHH---hcCCCEEEEEECccccCCCHHHHHHHHHHHhCC
Confidence 333 257899999999999753 22 4555566554
No 250
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.22 E-value=2e-10 Score=121.75 Aligned_cols=124 Identities=18% Similarity=0.119 Sum_probs=87.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC--CCC------C------------CCCCceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG--QFS------Q------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~--~~~------~------------~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
-+|+++|.+|+|||||+++|... ... . ....|+......+..++.++.+|||||+.++..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 48999999999999999999631 110 0 112233333445667788999999999999888
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
.....++.+|+++ +|+|+++....+. ...+..+.
T Consensus 91 ~~~~~l~~~D~~i-----------------------------------------lVvda~~g~~~~~-~~~~~~~~---- 124 (689)
T TIGR00484 91 EVERSLRVLDGAV-----------------------------------------AVLDAVGGVQPQS-ETVWRQAN---- 124 (689)
T ss_pred HHHHHHHHhCEEE-----------------------------------------EEEeCCCCCChhH-HHHHHHHH----
Confidence 8888999999999 9999987544332 22333332
Q ss_pred CCCCcEEEEEEcCCCCChh---hHHHHHHHhCC
Q psy2970 161 LIGIPILVLGNKRDLPNAL---DEKELIDRIMI 190 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~---e~~~l~~~~~~ 190 (329)
..++|+++++||+|+.++. ..+++.+.++.
T Consensus 125 ~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~ 157 (689)
T TIGR00484 125 RYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGA 157 (689)
T ss_pred HcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 2468999999999998642 34566666654
No 251
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.21 E-value=1.7e-10 Score=121.08 Aligned_cols=152 Identities=15% Similarity=0.094 Sum_probs=94.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCC--CC-----------C----------------------CCCc
Q psy2970 8 ILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQF--SQ-----------D----------------------MIPT 52 (329)
Q Consensus 8 ~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~--~~-----------~----------------------~~pT 52 (329)
+..++.....++.++|+++|.+++|||||+++|+...- .. . ..-|
T Consensus 12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~T 91 (632)
T PRK05506 12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGIT 91 (632)
T ss_pred HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcC
Confidence 34455555567889999999999999999999985321 10 0 0112
Q ss_pred eeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcce
Q psy2970 53 VGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQL 132 (329)
Q Consensus 53 ig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (329)
+...+..+..++.++.++||||+++|..........+|+++
T Consensus 92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~l--------------------------------------- 132 (632)
T PRK05506 92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAI--------------------------------------- 132 (632)
T ss_pred ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEE---------------------------------------
Confidence 22233345566778899999999887544444567888888
Q ss_pred eEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC--hhh-------HHHHHHHhC---CcEEEEeccch
Q psy2970 133 IKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALD-------EKELIDRIM---IDFWITLTLLI 200 (329)
Q Consensus 133 ~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~--~~e-------~~~l~~~~~---~~~~etSAk~~ 200 (329)
+|+|+.+... ....+.+. +... ....|++|+.||+|+.+ +.. ..++.++++ .+++.+||+++
T Consensus 133 --lVvda~~g~~-~~t~e~~~-~~~~--~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g 206 (632)
T PRK05506 133 --ILVDARKGVL-TQTRRHSF-IASL--LGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKG 206 (632)
T ss_pred --EEEECCCCcc-ccCHHHHH-HHHH--hCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccC
Confidence 9999875321 11111111 1111 12257889999999974 221 222334445 35999999995
Q ss_pred HHHH
Q psy2970 201 RWCE 204 (329)
Q Consensus 201 ~~~~ 204 (329)
.+.+
T Consensus 207 ~ni~ 210 (632)
T PRK05506 207 DNVV 210 (632)
T ss_pred CCcc
Confidence 5544
No 252
>PLN03126 Elongation factor Tu; Provisional
Probab=99.20 E-value=2.5e-10 Score=116.55 Aligned_cols=138 Identities=17% Similarity=0.199 Sum_probs=91.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC------CC------------CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ------FS------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~------~~------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.+..++|+++|..++|||||+++|+... .. ....-|+......++.++.++.++||||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4667999999999999999999998511 10 11112333333345566778999999999988
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
..........+|+.+ +|+|+.+-.. ....+.+..+ .
T Consensus 158 ~~~~~~g~~~aD~ai-----------------------------------------lVVda~~G~~-~qt~e~~~~~-~- 193 (478)
T PLN03126 158 VKNMITGAAQMDGAI-----------------------------------------LVVSGADGPM-PQTKEHILLA-K- 193 (478)
T ss_pred HHHHHHHHhhCCEEE-----------------------------------------EEEECCCCCc-HHHHHHHHHH-H-
Confidence 655555667788888 9999876422 2223333333 2
Q ss_pred CcCCCCc-EEEEEEcCCCCChh--------hHHHHHHHh-----CCcEEEEeccch
Q psy2970 159 PQLIGIP-ILVLGNKRDLPNAL--------DEKELIDRI-----MIDFWITLTLLI 200 (329)
Q Consensus 159 ~~~~~iP-IiLVgNK~Dl~~~~--------e~~~l~~~~-----~~~~~etSAk~~ 200 (329)
..++| ++++.||+|+.+.. +..++.+.+ .++++.+||.+.
T Consensus 194 --~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g 247 (478)
T PLN03126 194 --QVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLA 247 (478)
T ss_pred --HcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccc
Confidence 24678 77899999997642 233344443 467999999874
No 253
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.20 E-value=9.8e-12 Score=100.82 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-CceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeeccee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMI-PTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLY 99 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~-pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~ 99 (329)
+||+++|+.|||||+|+.++....+...+. +|++ +......+.+.++.++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~------ 51 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVL------ 51 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEE------
Confidence 589999999999999999998888765444 5555 1222234566677777
Q ss_pred eehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChh
Q psy2970 100 IVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL 179 (329)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~ 179 (329)
.|+|.+++++++.. |...+... ...++|+++++||.|+.+..
T Consensus 52 -----------------------------------~v~~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~ 93 (124)
T smart00010 52 -----------------------------------QCWRVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER 93 (124)
T ss_pred -----------------------------------EEEEccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC
Confidence 89999999988765 55555443 34678999999999985432
Q ss_pred hHHHHHHHhCCcEEEEeccchHH
Q psy2970 180 DEKELIDRIMIDFWITLTLLIRW 202 (329)
Q Consensus 180 e~~~l~~~~~~~~~etSAk~~~~ 202 (329)
++.++.+.+++++|+++...
T Consensus 94 ---~~~~~~~~~~~~~s~~~~~~ 113 (124)
T smart00010 94 ---QVATEEGLEFAETSAKTPEE 113 (124)
T ss_pred ---cCCHHHHHHHHHHhCCCcch
Confidence 34445555678888888543
No 254
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.19 E-value=3.7e-10 Score=112.82 Aligned_cols=73 Identities=23% Similarity=0.413 Sum_probs=51.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-CC-----CCceeeeEEE-------------------ee-CceEEEEEEecCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQ-DM-----IPTVGFNMRK-------------------IT-KGNVTIKVWDIGG 74 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~-~~-----~pTig~~~~~-------------------i~-~~~~~l~I~DtpG 74 (329)
+||.++|.||||||||+|++++.++.. .| .|++|..... .+ ....++++|||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999877642 22 3555543321 01 2336799999999
Q ss_pred Cc----cccchHHHH---hhccceeE
Q psy2970 75 QP----RFRSMWERY---CRGVNAIV 93 (329)
Q Consensus 75 ~e----~~~~~~~~~---~~~ad~iI 93 (329)
.. ....+...+ ++++|+++
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll 107 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALI 107 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEE
Confidence 53 334444455 88999999
No 255
>KOG0090|consensus
Probab=99.18 E-value=1.1e-10 Score=107.14 Aligned_cols=125 Identities=24% Similarity=0.337 Sum_probs=91.0
Q ss_pred hcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhh---ccc
Q psy2970 14 SLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCR---GVN 90 (329)
Q Consensus 14 ~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~---~ad 90 (329)
...++.+-.|+++|+.++|||+|.-++..+.+.+ ..+.++.+......+.-.+++.|.||+++.+.....++. .+.
T Consensus 32 ~~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~-TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~ak 110 (238)
T KOG0090|consen 32 LFRRSKQNAVLLVGLSDSGKTSLFTQLITGSHRG-TVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAK 110 (238)
T ss_pred HHhhccCCcEEEEecCCCCceeeeeehhcCCccC-eeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccce
Confidence 3334455689999999999999999999886542 233344443334444445899999999999888877887 688
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECC-CcccHHHHHHHHHHHHhCC--cCCCCcEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA-DTDKLEASRNELHALIEKP--QLIGIPIL 167 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt-~~~S~~~~~~~l~~i~~~~--~~~~iPIi 167 (329)
+++ ||+|.. .+.....+.+.+-.++-.. ...++|++
T Consensus 111 aiV-----------------------------------------FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vL 149 (238)
T KOG0090|consen 111 AIV-----------------------------------------FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVL 149 (238)
T ss_pred eEE-----------------------------------------EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEE
Confidence 888 999954 4445666666666665543 35789999
Q ss_pred EEEEcCCCCChhh
Q psy2970 168 VLGNKRDLPNALD 180 (329)
Q Consensus 168 LVgNK~Dl~~~~e 180 (329)
+.+||.|+.-+..
T Consensus 150 IaCNKqDl~tAkt 162 (238)
T KOG0090|consen 150 IACNKQDLFTAKT 162 (238)
T ss_pred EEecchhhhhcCc
Confidence 9999999976533
No 256
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.18 E-value=9.6e-10 Score=98.36 Aligned_cols=159 Identities=17% Similarity=0.059 Sum_probs=88.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-C---CCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQ-D---MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~-~---~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++|+++|.+|||||||+|.+++.+... . ...|..........++..+.++||||..+.........
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~---------- 70 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLS---------- 70 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHH----------
Confidence 479999999999999999999876431 1 12344444444445667899999999755421100000
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc-cHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~-S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+.+.+.+.... ...+++++|+|+.+.. ......+++.++... ..-.++++|.|+.|.
T Consensus 71 ------~~i~~~~~~~~--------------~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~ 128 (196)
T cd01852 71 ------KEIVRCLSLSA--------------PGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDD 128 (196)
T ss_pred ------HHHHHHHHhcC--------------CCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccc
Confidence 00001000000 1223444999987632 122333444444321 122478899999986
Q ss_pred CCh-----------hhHHHHHHHhCCcEEEEec-----cchHHHHHHhhhhc
Q psy2970 176 PNA-----------LDEKELIDRIMIDFWITLT-----LLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~-----------~e~~~l~~~~~~~~~etSA-----k~~~~~~~~l~~i~ 211 (329)
... ...+.+.++.+-.+...+. ......+++++.+.
T Consensus 129 l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~ 180 (196)
T cd01852 129 LEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVE 180 (196)
T ss_pred cCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHH
Confidence 542 3355566665655544443 34666666666654
No 257
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.18 E-value=1.9e-10 Score=116.50 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=98.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC--CC-------------------------------CCCCCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ--FS-------------------------------QDMIPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~--~~-------------------------------~~~~pTig~~~~~i~~~ 63 (329)
.+..++|+++|..++|||||+-+|+..- .. ....-|+...+..+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 4677999999999999999999886310 00 11123444445556778
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
+..+.+.||||+++|.......+..+|+.+ +|+|+++ .
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aI-----------------------------------------lVVda~~-G 121 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAV-----------------------------------------LIIDSTT-G 121 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEE-----------------------------------------EEEEccc-C
Confidence 889999999999999877777889999999 9999986 2
Q ss_pred cHH-------HHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCCh-----------hhHHHHHHHhC-----CcEEEEeccc
Q psy2970 144 KLE-------ASRNELHALIEKPQLIGIP-ILVLGNKRDLPNA-----------LDEKELIDRIM-----IDFWITLTLL 199 (329)
Q Consensus 144 S~~-------~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~~-----------~e~~~l~~~~~-----~~~~etSAk~ 199 (329)
.|+ ...+.+..+ . ..++| ++|++||+|+.+. .+.+++.++.+ ++|+++||++
T Consensus 122 ~~e~g~~~~~qT~eh~~~~-~---~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~ 197 (447)
T PLN00043 122 GFEAGISKDGQTREHALLA-F---TLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFE 197 (447)
T ss_pred ceecccCCCchHHHHHHHH-H---HcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccc
Confidence 232 222222221 1 24564 7889999998621 34556666666 6799999999
Q ss_pred hHHH
Q psy2970 200 IRWC 203 (329)
Q Consensus 200 ~~~~ 203 (329)
+.+.
T Consensus 198 G~ni 201 (447)
T PLN00043 198 GDNM 201 (447)
T ss_pred cccc
Confidence 5443
No 258
>KOG1191|consensus
Probab=99.15 E-value=4e-10 Score=113.73 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=99.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEE-EeeCceEEEEEEecCCCccccc---------hHHH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMR-KITKGNVTIKVWDIGGQPRFRS---------MWER 84 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~-~i~~~~~~l~I~DtpG~e~~~~---------~~~~ 84 (329)
.++.++|+++|+||||||||+|++.+.+.. ....-|+.+.+. .++.+++++.+.||+|...-.. ....
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 456799999999999999999999988763 222223333333 4788999999999999654111 1122
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEEC--CCcccHHHHHHHHHHHHhC----
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA--ADTDKLEASRNELHALIEK---- 158 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dv--t~~~S~~~~~~~l~~i~~~---- 158 (329)
..+.+|.++ +|+|+ ++.++-..+.+.+...-..
T Consensus 345 ~~~~advi~-----------------------------------------~vvda~~~~t~sd~~i~~~l~~~~~g~~~~ 383 (531)
T KOG1191|consen 345 RIERADVIL-----------------------------------------LVVDAEESDTESDLKIARILETEGVGLVVI 383 (531)
T ss_pred HHhhcCEEE-----------------------------------------EEecccccccccchHHHHHHHHhccceEEE
Confidence 344555555 99999 4444434444444443221
Q ss_pred -CcCCCCcEEEEEEcCCCCCh-hhHHH----HHHHhC---C-cEEEEeccchHHHHHHhhhhc
Q psy2970 159 -PQLIGIPILVLGNKRDLPNA-LDEKE----LIDRIM---I-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 159 -~~~~~iPIiLVgNK~Dl~~~-~e~~~----l~~~~~---~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
....+-|++++.||+|+... .+... +....+ . ...++|+++.++++.+...+.
T Consensus 384 ~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all 446 (531)
T KOG1191|consen 384 VNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALL 446 (531)
T ss_pred eccccccceEEEechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHH
Confidence 12245789999999999876 22111 222222 2 356799999999999887764
No 259
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.15 E-value=3.1e-10 Score=113.35 Aligned_cols=139 Identities=16% Similarity=0.109 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCC---------------------------------CCCCceeeeEEEeeCceE
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ--FSQ---------------------------------DMIPTVGFNMRKITKGNV 65 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~--~~~---------------------------------~~~pTig~~~~~i~~~~~ 65 (329)
++|+++|..++|||||+.+|+... ... ...-|+...+..+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999996321 100 011223333444566777
Q ss_pred EEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH
Q psy2970 66 TIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL 145 (329)
Q Consensus 66 ~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~ 145 (329)
++.++||||+++|.......+..+|+++ +|+|+.....
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~al-----------------------------------------lVVda~~G~~- 118 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAV-----------------------------------------LLVDARKGVL- 118 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEE-----------------------------------------EEEECCCCCc-
Confidence 8999999999988554455677888888 9999875321
Q ss_pred HHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChh---------hHHHHHHHhC---CcEEEEeccchHHHH
Q psy2970 146 EASRNELHALIEKPQLIGIPILVLGNKRDLPNAL---------DEKELIDRIM---IDFWITLTLLIRWCE 204 (329)
Q Consensus 146 ~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~---------e~~~l~~~~~---~~~~etSAk~~~~~~ 204 (329)
....+.+. +.... ...+++++.||+|+.+.. +..++.+.++ ++++++||+++.+.+
T Consensus 119 ~qt~~~~~-~~~~~--~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~ 186 (406)
T TIGR02034 119 EQTRRHSY-IASLL--GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVV 186 (406)
T ss_pred cccHHHHH-HHHHc--CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCc
Confidence 11111111 11211 123688999999997521 1222334444 469999999965443
No 260
>PRK00049 elongation factor Tu; Reviewed
Probab=99.13 E-value=3.7e-10 Score=112.44 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=89.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC------------------CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS------------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~------------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.+..++|+++|..++|||||+++|+..... ....-|+......+..++.++.+.||||..+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 467899999999999999999999862100 01122333333345556778899999999877
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
..........+|+++ +|+|+.+... ......+..+ .
T Consensus 89 ~~~~~~~~~~aD~~l-----------------------------------------lVVDa~~g~~-~qt~~~~~~~-~- 124 (396)
T PRK00049 89 VKNMITGAAQMDGAI-----------------------------------------LVVSAADGPM-PQTREHILLA-R- 124 (396)
T ss_pred HHHHHhhhccCCEEE-----------------------------------------EEEECCCCCc-hHHHHHHHHH-H-
Confidence 555455567788888 9999876421 2222333322 2
Q ss_pred CcCCCCcEE-EEEEcCCCCChhh--------HHHHHHHh-----CCcEEEEeccch
Q psy2970 159 PQLIGIPIL-VLGNKRDLPNALD--------EKELIDRI-----MIDFWITLTLLI 200 (329)
Q Consensus 159 ~~~~~iPIi-LVgNK~Dl~~~~e--------~~~l~~~~-----~~~~~etSAk~~ 200 (329)
..++|++ ++.||+|+.+..+ ..++...+ .++++.+||++.
T Consensus 125 --~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g 178 (396)
T PRK00049 125 --QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKA 178 (396)
T ss_pred --HcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccc
Confidence 2467875 5899999975322 22222222 267999999873
No 261
>PLN03127 Elongation factor Tu; Provisional
Probab=99.12 E-value=5.3e-10 Score=113.26 Aligned_cols=137 Identities=17% Similarity=0.158 Sum_probs=87.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcC------CC----------C--CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASG------QF----------S--QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~------~~----------~--~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.+..++|+++|..++|||||+++|.+. .. . ....-|+......++.++.++.+.||||..+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 456799999999999999999999621 10 0 11223444444456667778999999999877
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
..........+|+++ +|+|..+... ....+.+..+ .
T Consensus 138 ~~~~~~g~~~aD~al-----------------------------------------lVVda~~g~~-~qt~e~l~~~-~- 173 (447)
T PLN03127 138 VKNMITGAAQMDGGI-----------------------------------------LVVSAPDGPM-PQTKEHILLA-R- 173 (447)
T ss_pred HHHHHHHHhhCCEEE-----------------------------------------EEEECCCCCc-hhHHHHHHHH-H-
Confidence 544444455678888 9999875421 2222222222 2
Q ss_pred CcCCCCc-EEEEEEcCCCCChhh--------HHHHHHHh-----CCcEEEEeccc
Q psy2970 159 PQLIGIP-ILVLGNKRDLPNALD--------EKELIDRI-----MIDFWITLTLL 199 (329)
Q Consensus 159 ~~~~~iP-IiLVgNK~Dl~~~~e--------~~~l~~~~-----~~~~~etSAk~ 199 (329)
..++| ++++.||+|+.+..+ ..++...+ .++++.+||.+
T Consensus 174 --~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~s 226 (447)
T PLN03127 174 --QVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALS 226 (447)
T ss_pred --HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccce
Confidence 24688 478899999986422 11222222 26788888864
No 262
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.11 E-value=6.8e-10 Score=107.52 Aligned_cols=182 Identities=16% Similarity=0.137 Sum_probs=107.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCC-ceeeeEEEeeCceEEEEEEecCCCccc----c---chHHHHhhccc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS-QDMIP-TVGFNMRKITKGNVTIKVWDIGGQPRF----R---SMWERYCRGVN 90 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~p-Tig~~~~~i~~~~~~l~I~DtpG~e~~----~---~~~~~~~~~ad 90 (329)
.-+++++|.|+||||||++++++.+.. ..|.- |....-..+.+++.++++.|+||...- + ...-...+.||
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD 142 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD 142 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence 468999999999999999999987653 34443 333333447899999999999985322 1 23345678899
Q ss_pred eeEeeccee-------eehhccccccccccCCC-cCCCCchhhhhhhcceeEEEEE--CCCcccHHHHHHHHHHH-----
Q psy2970 91 AIVWTGGLY-------IVSKHIKRSAILYYEPV-DLGVSGPMWLSLLFQLIKYMVD--AADTDKLEASRNELHAL----- 155 (329)
Q Consensus 91 ~iI~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lV~D--vt~~~S~~~~~~~l~~i----- 155 (329)
.+++++.++ .+.+.+.+..+.+.+.| +..+-. .....+.+.-- +++ -..+.++..+.+.
T Consensus 143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~k-----k~~gGI~i~~t~~l~~-~d~~~ir~iL~Ey~I~nA 216 (365)
T COG1163 143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKK-----KESGGIRINGTGPLTH-LDEDTVRAILREYRIHNA 216 (365)
T ss_pred EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEE-----eccCCEEEeccccccc-CCHHHHHHHHHHhCcccc
Confidence 999554444 12223334444443332 211100 00111111110 000 0112222222221
Q ss_pred ----------------HhCCcCCCCcEEEEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 156 ----------------IEKPQLIGIPILVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 156 ----------------~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.. +-.-+|.++|.||+|+...++.+.+.+.. ..+.+||+..-+.+++.+.+
T Consensus 217 ~V~Ir~dvTlDd~id~l~~-nrvY~p~l~v~NKiD~~~~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i 284 (365)
T COG1163 217 DVLIREDVTLDDLIDALEG-NRVYKPALYVVNKIDLPGLEELERLARKP--NSVPISAKKGINLDELKERI 284 (365)
T ss_pred eEEEecCCcHHHHHHHHhh-cceeeeeEEEEecccccCHHHHHHHHhcc--ceEEEecccCCCHHHHHHHH
Confidence 111 01247999999999999988888888777 88999999966666666554
No 263
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.08 E-value=1.2e-09 Score=116.53 Aligned_cols=113 Identities=19% Similarity=0.160 Sum_probs=80.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC---------------CCCC---CCCCceeeeEE----EeeCceEEEEEEecCCCc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG---------------QFSQ---DMIPTVGFNMR----KITKGNVTIKVWDIGGQP 76 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~---------------~~~~---~~~pTig~~~~----~i~~~~~~l~I~DtpG~e 76 (329)
+-.+|+++|..++|||||+++|+.. ++.+ ....|+..... .++.+++.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 4469999999999999999999742 2211 12335443322 256778999999999999
Q ss_pred cccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHH
Q psy2970 77 RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALI 156 (329)
Q Consensus 77 ~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~ 156 (329)
+|.......++.+|+++ +|+|+.+.-..+. ...+....
T Consensus 98 ~f~~~~~~al~~aD~~l-----------------------------------------lVvda~~g~~~~t-~~~~~~~~ 135 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAI-----------------------------------------VVVCAVEGVMPQT-ETVLRQAL 135 (720)
T ss_pred ccHHHHHHHHHhcCEEE-----------------------------------------EEEecCCCCCccH-HHHHHHHH
Confidence 99887788999999999 9999876321111 22222222
Q ss_pred hCCcCCCCcEEEEEEcCCCCC
Q psy2970 157 EKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 157 ~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
..++|+++++||+|...
T Consensus 136 ----~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 136 ----KENVKPVLFINKVDRLI 152 (720)
T ss_pred ----HcCCCEEEEEEChhccc
Confidence 24578889999999875
No 264
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.04 E-value=2.9e-09 Score=107.86 Aligned_cols=142 Identities=15% Similarity=0.149 Sum_probs=93.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc--CCCC-------------------------------CCCCCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS--GQFS-------------------------------QDMIPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~--~~~~-------------------------------~~~~pTig~~~~~i~~~ 63 (329)
.+..++|+++|..++|||||+.+|+. +... ....-|+...+..++.+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 46789999999999999999999964 1100 11123444445556778
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
+..+.+.||||+++|..........+|+++ +|+|+++..
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ai-----------------------------------------lVVda~~G~ 122 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAI-----------------------------------------LVVASTAGE 122 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEE-----------------------------------------EEEEcCCCc
Confidence 889999999999998766666778888888 999987532
Q ss_pred ---cH---HHHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCC----h-------hhHHHHHHHhC-----CcEEEEeccch
Q psy2970 144 ---KL---EASRNELHALIEKPQLIGIP-ILVLGNKRDLPN----A-------LDEKELIDRIM-----IDFWITLTLLI 200 (329)
Q Consensus 144 ---S~---~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~----~-------~e~~~l~~~~~-----~~~~etSAk~~ 200 (329)
.| ....+.+..+ . ..++| ++++.||+|.+. + .+..++.+..+ ++++.+||.++
T Consensus 123 ~e~~~~~~~qT~eh~~~~-~---~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g 198 (446)
T PTZ00141 123 FEAGISKDGQTREHALLA-F---TLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQG 198 (446)
T ss_pred eecccCCCccHHHHHHHH-H---HcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccC
Confidence 01 1222222222 2 24666 678999999532 1 22333333333 57999999995
Q ss_pred HHH
Q psy2970 201 RWC 203 (329)
Q Consensus 201 ~~~ 203 (329)
.+.
T Consensus 199 ~ni 201 (446)
T PTZ00141 199 DNM 201 (446)
T ss_pred CCc
Confidence 443
No 265
>PRK12739 elongation factor G; Reviewed
Probab=99.00 E-value=3.4e-09 Score=112.50 Aligned_cols=126 Identities=21% Similarity=0.145 Sum_probs=86.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC--CC------C------------CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG--QF------S------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~--~~------~------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
+-.+|.++|.+++|||||+++|... .. . ....-|+......+..++.++.++||||..++
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 4468999999999999999999642 10 0 01122333333445667889999999999888
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
...+...++.+|+++ +|+|..+.-.- .....+..+.
T Consensus 87 ~~e~~~al~~~D~~i-----------------------------------------lVvDa~~g~~~-qt~~i~~~~~-- 122 (691)
T PRK12739 87 TIEVERSLRVLDGAV-----------------------------------------AVFDAVSGVEP-QSETVWRQAD-- 122 (691)
T ss_pred HHHHHHHHHHhCeEE-----------------------------------------EEEeCCCCCCH-HHHHHHHHHH--
Confidence 777888899999999 99998764321 1122333332
Q ss_pred CcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCC
Q psy2970 159 PQLIGIPILVLGNKRDLPNA---LDEKELIDRIMI 190 (329)
Q Consensus 159 ~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~ 190 (329)
..++|++++.||+|+.++ ...+++.+.++.
T Consensus 123 --~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~ 155 (691)
T PRK12739 123 --KYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGA 155 (691)
T ss_pred --HcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 246899999999999865 234555555553
No 266
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.00 E-value=7.6e-09 Score=100.37 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=43.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCC-ceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIP-TVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~p-Tig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
...++|+++|.+||||||++|++++.+.. ....+ +..........++.++.++||||..+.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 45789999999999999999999987642 11111 122222223346788999999998765
No 267
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.99 E-value=7.9e-10 Score=109.50 Aligned_cols=83 Identities=28% Similarity=0.502 Sum_probs=67.8
Q ss_pred ceeeeEEEeeC-ceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhc
Q psy2970 52 TVGFNMRKITK-GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLF 130 (329)
Q Consensus 52 Tig~~~~~i~~-~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (329)
|+|+.-..+.. +...+.++|++||..-+..|.+++.++++++
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vi------------------------------------- 264 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVI------------------------------------- 264 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEE-------------------------------------
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEE-------------------------------------
Confidence 33333334555 7788999999999999999999999999999
Q ss_pred ceeEEEEECCC----------cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 131 QLIKYMVDAAD----------TDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 131 ~~~~lV~Dvt~----------~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
||+++++ ...+.+....+.++.+.+++.++|++|+.||.|+
T Consensus 265 ----f~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 265 ----FVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp ----EEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred ----EeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 7777643 3568899999999999999999999999999997
No 268
>PRK12740 elongation factor G; Reviewed
Probab=98.98 E-value=5.6e-09 Score=110.19 Aligned_cols=120 Identities=20% Similarity=0.161 Sum_probs=86.1
Q ss_pred EcCCCCCHHHHHHHHHcCCC--------C------------CCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHH
Q psy2970 26 VGLQCSGKTTFVNVIASGQF--------S------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERY 85 (329)
Q Consensus 26 lG~~gvGKSSLin~l~~~~~--------~------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~ 85 (329)
+|.+|+|||||+++|....- . .....|++.....+..++..+.+|||||+.++...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 59999999999999953211 0 112345555555677788999999999999887778888
Q ss_pred hhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc
Q psy2970 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP 165 (329)
Q Consensus 86 ~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP 165 (329)
++.+|+++ +|+|.++....... ..+..+.. .++|
T Consensus 81 l~~aD~vl-----------------------------------------lvvd~~~~~~~~~~-~~~~~~~~----~~~p 114 (668)
T PRK12740 81 LRVLDGAV-----------------------------------------VVVCAVGGVEPQTE-TVWRQAEK----YGVP 114 (668)
T ss_pred HHHhCeEE-----------------------------------------EEEeCCCCcCHHHH-HHHHHHHH----cCCC
Confidence 99999999 99999876554333 23333322 4689
Q ss_pred EEEEEEcCCCCCh---hhHHHHHHHhCCc
Q psy2970 166 ILVLGNKRDLPNA---LDEKELIDRIMID 191 (329)
Q Consensus 166 IiLVgNK~Dl~~~---~e~~~l~~~~~~~ 191 (329)
+++|+||+|+... ...+++.+.++.+
T Consensus 115 ~iiv~NK~D~~~~~~~~~~~~l~~~l~~~ 143 (668)
T PRK12740 115 RIIFVNKMDRAGADFFRVLAQLQEKLGAP 143 (668)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHCCC
Confidence 9999999999764 2345666666653
No 269
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.97 E-value=8.9e-09 Score=96.90 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=44.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCC-CCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--QDM-IPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~-~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
..+++|+|+|.+|||||||+|++++.... ... ..|..........++.++.++||||..+.
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 45799999999999999999999987653 122 23434444344556678999999997654
No 270
>KOG1532|consensus
Probab=98.97 E-value=1.2e-09 Score=104.04 Aligned_cols=161 Identities=16% Similarity=0.177 Sum_probs=97.6
Q ss_pred cCCCCceEEEEEcCCCCCHHHHHHHHHc---CCCCCCC-------------CCcee----eeEE----------------
Q psy2970 15 LFWKEEMELTLVGLQCSGKTTFVNVIAS---GQFSQDM-------------IPTVG----FNMR---------------- 58 (329)
Q Consensus 15 ~~~~k~lkIlllG~~gvGKSSLin~l~~---~~~~~~~-------------~pTig----~~~~---------------- 58 (329)
.+.+++.-|+++|..|+|||||+.|+.. .+..+.| ...+. ++|+
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 4567789999999999999999999964 1111111 11111 0011
Q ss_pred -------Ee---------eCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCc
Q psy2970 59 -------KI---------TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSG 122 (329)
Q Consensus 59 -------~i---------~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
++ ....+...+.|||||..- +...|.+.|||.+++...|
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~------FtWSAsGsIIte~lass~p------------------- 148 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEA------FTWSASGSIITETLASSFP------------------- 148 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEE------EEecCCccchHhhHhhcCC-------------------
Confidence 00 122356889999998642 4445566665544444433
Q ss_pred hhhhhhhcceeEEEEECCC---cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHH-------------
Q psy2970 123 PMWLSLLFQLIKYMVDAAD---TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID------------- 186 (329)
Q Consensus 123 ~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~------------- 186 (329)
.++.||+|... +.+|-.-.-+-..++- ..+.|.|+|.||+|+.+..-+.+|..
T Consensus 149 --------tvv~YvvDt~rs~~p~tFMSNMlYAcSily---ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~ 217 (366)
T KOG1532|consen 149 --------TVVVYVVDTPRSTSPTTFMSNMLYACSILY---KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAE 217 (366)
T ss_pred --------eEEEEEecCCcCCCchhHHHHHHHHHHHHH---hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhc
Confidence 23448899654 4445444444444444 36899999999999988622111111
Q ss_pred ----------------Hh--CCcEEEEeccchHHHHHHhhhhc
Q psy2970 187 ----------------RI--MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 187 ----------------~~--~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++ ++..+-+|+.++.+.+.|+..+.
T Consensus 218 ~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~ 260 (366)
T KOG1532|consen 218 SSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVD 260 (366)
T ss_pred cchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHH
Confidence 11 25678899999888888887764
No 271
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.96 E-value=2.2e-09 Score=102.06 Aligned_cols=121 Identities=18% Similarity=0.348 Sum_probs=80.4
Q ss_pred hcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCC--CCceeeeEE-EeeCceEEEEEEecCCCcc-------ccchHH
Q psy2970 14 SLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDM--IPTVGFNMR-KITKGNVTIKVWDIGGQPR-------FRSMWE 83 (329)
Q Consensus 14 ~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~--~pTig~~~~-~i~~~~~~l~I~DtpG~e~-------~~~~~~ 83 (329)
.+..++.++|++.|..|+||||++|+++.++..+-. ..+....-+ ....+.-.+.+|||||.++ ++....
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHH
Confidence 444678999999999999999999999976654221 111111111 1233446788999999765 444556
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.++.+.|.++ ++.|..|+. +.--...+++++.. ..+
T Consensus 113 d~l~~~DLvL-----------------------------------------~l~~~~dra-L~~d~~f~~dVi~~--~~~ 148 (296)
T COG3596 113 DYLPKLDLVL-----------------------------------------WLIKADDRA-LGTDEDFLRDVIIL--GLD 148 (296)
T ss_pred HHhhhccEEE-----------------------------------------EeccCCCcc-ccCCHHHHHHHHHh--ccC
Confidence 6777777666 888888864 22223444455433 244
Q ss_pred CcEEEEEEcCCCCCh
Q psy2970 164 IPILVLGNKRDLPNA 178 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~ 178 (329)
.|++++.|++|...+
T Consensus 149 ~~~i~~VtQ~D~a~p 163 (296)
T COG3596 149 KRVLFVVTQADRAEP 163 (296)
T ss_pred ceeEEEEehhhhhcc
Confidence 789999999998643
No 272
>PRK13768 GTPase; Provisional
Probab=98.96 E-value=3.7e-09 Score=99.38 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=45.9
Q ss_pred EEEECCCcccHHHHH-HH-HHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHH----------------------------
Q psy2970 135 YMVDAADTDKLEASR-NE-LHALIEKPQLIGIPILVLGNKRDLPNALDEKEL---------------------------- 184 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~-~~-l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l---------------------------- 184 (329)
+++|.....+..... .+ +...... ..++|+++|+||+|+.+..+.+++
T Consensus 134 ~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 211 (253)
T PRK13768 134 FLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLEL 211 (253)
T ss_pred EEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHH
Confidence 999996543322221 12 2211111 247899999999999765332221
Q ss_pred ---HHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 185 ---IDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 185 ---~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++++ .+++++|+++....+++...+.
T Consensus 212 ~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~ 243 (253)
T PRK13768 212 LRALEETGLPVRVIPVSAKTGEGFDELYAAIQ 243 (253)
T ss_pred HHHHHHHCCCCcEEEEECCCCcCHHHHHHHHH
Confidence 12334 5789999999888888776664
No 273
>PRK00007 elongation factor G; Reviewed
Probab=98.96 E-value=7.9e-09 Score=109.84 Aligned_cols=124 Identities=21% Similarity=0.135 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc--CCC------C------------CCCCCceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS--GQF------S------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~--~~~------~------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
.+|+++|.+++|||||+++|.. +.. . ....-|+......+..++.++.+.||||..+|..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ 90 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTI 90 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHH
Confidence 5899999999999999999963 211 0 0111233333334566778999999999988766
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
.....++.+|+++ +|+|....-.-+ ....+..+.
T Consensus 91 ev~~al~~~D~~v-----------------------------------------lVvda~~g~~~q-t~~~~~~~~---- 124 (693)
T PRK00007 91 EVERSLRVLDGAV-----------------------------------------AVFDAVGGVEPQ-SETVWRQAD---- 124 (693)
T ss_pred HHHHHHHHcCEEE-----------------------------------------EEEECCCCcchh-hHHHHHHHH----
Confidence 5666778888888 999987542222 222333332
Q ss_pred CCCCcEEEEEEcCCCCChh---hHHHHHHHhCC
Q psy2970 161 LIGIPILVLGNKRDLPNAL---DEKELIDRIMI 190 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~---e~~~l~~~~~~ 190 (329)
..++|++++.||+|+.++. -.+++.++++.
T Consensus 125 ~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~ 157 (693)
T PRK00007 125 KYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGA 157 (693)
T ss_pred HcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 2468999999999998652 34555566554
No 274
>KOG0462|consensus
Probab=98.95 E-value=6.6e-09 Score=106.22 Aligned_cols=169 Identities=20% Similarity=0.193 Sum_probs=114.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC--C---------------CCCCCceeeeEEEee---CceEEEEEEecCCCccccch
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQF--S---------------QDMIPTVGFNMRKIT---KGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~--~---------------~~~~pTig~~~~~i~---~~~~~l~I~DtpG~e~~~~~ 81 (329)
++.++---.-|||||..+++..-- . ....-|+.-....+- ++.+.++++||||+.+|+..
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 577777778899999999975211 0 111122222222232 55599999999999999988
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
...-+..+++++ +|+|++.--.-+...+.+..+ .
T Consensus 142 VsRslaac~G~l-----------------------------------------LvVDA~qGvqAQT~anf~lAf-----e 175 (650)
T KOG0462|consen 142 VSRSLAACDGAL-----------------------------------------LVVDASQGVQAQTVANFYLAF-----E 175 (650)
T ss_pred ehehhhhcCceE-----------------------------------------EEEEcCcCchHHHHHHHHHHH-----H
Confidence 888889999999 999997643334444555444 2
Q ss_pred CCCcEEEEEEcCCCCCh--hh-HHHHHHHhC---CcEEEEeccchHHHHHHhhhh-cC-CCchhhhcCCcchhhhhhhhh
Q psy2970 162 IGIPILVLGNKRDLPNA--LD-EKELIDRIM---IDFWITLTLLIRWCESFLHHF-GS-HPNWAVKWHTLPKLLFLSLVD 233 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~--~e-~~~l~~~~~---~~~~etSAk~~~~~~~~l~~i-~~-~~~~~~~~~~~~~~~~~~~~~ 233 (329)
.+..+|.|.||+|++.+ ++ ..++.+-++ .+.+.+|||++-+.+++++.+ +. .|........+..++|.+-.+
T Consensus 176 ~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD 255 (650)
T KOG0462|consen 176 AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYD 255 (650)
T ss_pred cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhh
Confidence 46779999999999876 22 223334444 468999999977777777655 32 334445555777788888888
Q ss_pred ccc
Q psy2970 234 SYV 236 (329)
Q Consensus 234 ~~~ 236 (329)
+|.
T Consensus 256 ~y~ 258 (650)
T KOG0462|consen 256 EYR 258 (650)
T ss_pred hhc
Confidence 754
No 275
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.95 E-value=2.2e-08 Score=92.33 Aligned_cols=154 Identities=14% Similarity=0.205 Sum_probs=88.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
.....|+++|.+|+|||||++.+.+..-........|. +.-...++.++.++||||.. ..+ ....+.+|.++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVl---- 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADLVL---- 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HHH-HHHHHhcCEEE----
Confidence 45578999999999999999999864211111111111 11123456778999999854 222 23456778888
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc-EEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP-ILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~ 176 (329)
+++|.+....... ..+.+.+.. .+.| +++|.||+|+.
T Consensus 109 -------------------------------------lviDa~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 109 -------------------------------------LLIDASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLF 146 (225)
T ss_pred -------------------------------------EEEecCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccC
Confidence 9999875432211 222223222 3567 45599999996
Q ss_pred Chh----h-HHHH----HHHh--CCcEEEEeccc-----hHHHHHHhhhhcCCCchhhhcC
Q psy2970 177 NAL----D-EKEL----IDRI--MIDFWITLTLL-----IRWCESFLHHFGSHPNWAVKWH 221 (329)
Q Consensus 177 ~~~----e-~~~l----~~~~--~~~~~etSAk~-----~~~~~~~l~~i~~~~~~~~~~~ 221 (329)
+.. + .+++ .+++ +.+++.+||++ .+-...++-.+.......+.|+
T Consensus 147 ~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r 207 (225)
T cd01882 147 KKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWR 207 (225)
T ss_pred CcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeee
Confidence 431 1 1222 2222 25799999888 3444555555554444444443
No 276
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.93 E-value=1.4e-08 Score=103.43 Aligned_cols=150 Identities=14% Similarity=0.135 Sum_probs=94.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCC---CCC--CCCceeeeEE-----------------EeeCc-----------
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQF---SQD--MIPTVGFNMR-----------------KITKG----------- 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~---~~~--~~pTig~~~~-----------------~i~~~----------- 63 (329)
....++|.++|.-..|||||+++|++... ..+ ..-|+...|. .....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 45679999999999999999999996432 111 1112211111 01000
Q ss_pred -----eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEE
Q psy2970 64 -----NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVD 138 (329)
Q Consensus 64 -----~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~D 138 (329)
...+.+.|+||+++|......-...+|.++ +|+|
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~al-----------------------------------------LVVd 149 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAAL-----------------------------------------LLIA 149 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEE-----------------------------------------EEEE
Confidence 236889999999887554444566778888 9999
Q ss_pred CCCcccHHHHHHHHHHHHhCCcCCC-CcEEEEEEcCCCCChhhH----HHHHHH------hCCcEEEEeccchHHHHHHh
Q psy2970 139 AADTDKLEASRNELHALIEKPQLIG-IPILVLGNKRDLPNALDE----KELIDR------IMIDFWITLTLLIRWCESFL 207 (329)
Q Consensus 139 vt~~~S~~~~~~~l~~i~~~~~~~~-iPIiLVgNK~Dl~~~~e~----~~l~~~------~~~~~~etSAk~~~~~~~~l 207 (329)
+.+........+.+. +.+. .+ .|++||.||+|+.+..+. +++.+. ...+++.+||+++.+.+.++
T Consensus 150 a~~g~~~~qT~ehl~-i~~~---lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll 225 (460)
T PTZ00327 150 ANESCPQPQTSEHLA-AVEI---MKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVL 225 (460)
T ss_pred CCCCccchhhHHHHH-HHHH---cCCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHH
Confidence 986311111222222 2221 22 468999999999864322 222222 24689999999988888888
Q ss_pred hhhc
Q psy2970 208 HHFG 211 (329)
Q Consensus 208 ~~i~ 211 (329)
+.+.
T Consensus 226 ~~L~ 229 (460)
T PTZ00327 226 EYIC 229 (460)
T ss_pred HHHH
Confidence 8776
No 277
>PRK09866 hypothetical protein; Provisional
Probab=98.90 E-value=4.3e-08 Score=102.67 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=66.6
Q ss_pred EEEEEecCCCccc-----cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECC
Q psy2970 66 TIKVWDIGGQPRF-----RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA 140 (329)
Q Consensus 66 ~l~I~DtpG~e~~-----~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt 140 (329)
++.+.||||...- .......+.++|.++ +|+|.+
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVL-----------------------------------------FVVDat 269 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVL-----------------------------------------AVLDYT 269 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEE-----------------------------------------EEEeCC
Confidence 3668899997542 112344678888888 999998
Q ss_pred CcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC-----hhhHHHHHHHh----CC---cEEEEeccchHHHHHHhh
Q psy2970 141 DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN-----ALDEKELIDRI----MI---DFWITLTLLIRWCESFLH 208 (329)
Q Consensus 141 ~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~-----~~e~~~l~~~~----~~---~~~etSAk~~~~~~~~l~ 208 (329)
+..+... ....+.+ ... ..+.|+++|.||+|+.+ .+...++.+.. +. ..+.+||+.+.+.+.+++
T Consensus 270 ~~~s~~D-eeIlk~L-kk~-~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLd 346 (741)
T PRK09866 270 QLKSISD-EEVREAI-LAV-GQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARH 346 (741)
T ss_pred CCCChhH-HHHHHHH-Hhc-CCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Confidence 7533322 2222333 321 12369999999999875 23333333222 22 589999999999999988
Q ss_pred hhcCC
Q psy2970 209 HFGSH 213 (329)
Q Consensus 209 ~i~~~ 213 (329)
.+..+
T Consensus 347 eI~~~ 351 (741)
T PRK09866 347 ELANN 351 (741)
T ss_pred HHHhC
Confidence 87654
No 278
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.89 E-value=1.4e-08 Score=102.58 Aligned_cols=169 Identities=21% Similarity=0.189 Sum_probs=111.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC-----------C------CCCCCCce-----eeeEEEeeCceEEEEEEecCCCcccc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ-----------F------SQDMIPTV-----GFNMRKITKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~-----------~------~~~~~pTi-----g~~~~~i~~~~~~l~I~DtpG~e~~~ 79 (329)
+..++-.-.-|||||..|+.... + .....-|+ ...|..-+++.+.+++.||||+-+|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 34555666789999999996411 0 11112222 22333335678999999999999987
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
-.....+..+.+.+ +|+|++.--.-+.+.+.+..+
T Consensus 91 YEVSRSLAACEGal-----------------------------------------LvVDAsQGveAQTlAN~YlAl---- 125 (603)
T COG0481 91 YEVSRSLAACEGAL-----------------------------------------LVVDASQGVEAQTLANVYLAL---- 125 (603)
T ss_pred EEehhhHhhCCCcE-----------------------------------------EEEECccchHHHHHHHHHHHH----
Confidence 66666677778888 999998643334555555555
Q ss_pred cCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc---EEEEeccchHHHHHHhhhhc-CCC-chhhhcCCcchhhhhhh
Q psy2970 160 QLIGIPILVLGNKRDLPNA---LDEKELIDRIMID---FWITLTLLIRWCESFLHHFG-SHP-NWAVKWHTLPKLLFLSL 231 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~---~~etSAk~~~~~~~~l~~i~-~~~-~~~~~~~~~~~~~~~~~ 231 (329)
..+.-|+-|.||+||+.+ .-.+++.+-+|++ -+.+|||++.+.+++++.+- ..| ...-....+..++|.+.
T Consensus 126 -e~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~ 204 (603)
T COG0481 126 -ENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLKALIFDSW 204 (603)
T ss_pred -HcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcceEEEEecc
Confidence 245668889999999986 3356777778875 78999999777777776652 211 11222234555667777
Q ss_pred hhccc
Q psy2970 232 VDSYV 236 (329)
Q Consensus 232 ~~~~~ 236 (329)
+++|+
T Consensus 205 yD~Y~ 209 (603)
T COG0481 205 YDNYL 209 (603)
T ss_pred ccccc
Confidence 77654
No 279
>PTZ00258 GTP-binding protein; Provisional
Probab=98.89 E-value=3.4e-08 Score=98.57 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=49.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCC-CCC-CceeeeEEEeeCc-----------------eEEEEEEecCCCccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQ-DMI-PTVGFNMRKITKG-----------------NVTIKVWDIGGQPRF 78 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~-~~~-pTig~~~~~i~~~-----------------~~~l~I~DtpG~e~~ 78 (329)
...++|.++|.||||||||+|++++.+... .++ .|+..+...+... ..++.+.||||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 567899999999999999999998876532 222 2333333322111 335899999996532
Q ss_pred c----c---hHHHHhhccceeE
Q psy2970 79 R----S---MWERYCRGVNAIV 93 (329)
Q Consensus 79 ~----~---~~~~~~~~ad~iI 93 (329)
. . ..-..++++|+++
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il 120 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIY 120 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEE
Confidence 1 1 2233467899999
No 280
>KOG3905|consensus
Probab=98.84 E-value=4.8e-08 Score=95.03 Aligned_cols=154 Identities=15% Similarity=0.173 Sum_probs=101.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe----eCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..-+|+++|+.++|||||+.++.+.+ ..+.....+..|..+ .++..++.+|-+.|+.....+....+....
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e-~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats---- 125 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE-TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATS---- 125 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc-ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccC----
Confidence 34589999999999999999999877 334445555555443 234467889999997766666554433221
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH-HHHHHHHH---HHHhCC-----------
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL-EASRNELH---ALIEKP----------- 159 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~-~~~~~~l~---~i~~~~----------- 159 (329)
+--.+++++.|+++|..+ +.+..|.. +-+++.
T Consensus 126 ---------------------------------~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~r 172 (473)
T KOG3905|consen 126 ---------------------------------LAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGR 172 (473)
T ss_pred ---------------------------------ccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 111223389999998443 33333322 111110
Q ss_pred ----------------------------------------------cCCCCcEEEEEEcCCCCCh---------------
Q psy2970 160 ----------------------------------------------QLIGIPILVLGNKRDLPNA--------------- 178 (329)
Q Consensus 160 ----------------------------------------------~~~~iPIiLVgNK~Dl~~~--------------- 178 (329)
...++|++||++|+|....
T Consensus 173 qk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfi 252 (473)
T KOG3905|consen 173 QKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFI 252 (473)
T ss_pred HHHHHHHHHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHH
Confidence 0125899999999998431
Q ss_pred -hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 179 -LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 179 -~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
..+..||-++|..++.||+|...+++.+...+
T Consensus 253 q~~lRkFCLr~GaaLiyTSvKE~KNidllyKYi 285 (473)
T KOG3905|consen 253 QSHLRKFCLRYGAALIYTSVKETKNIDLLYKYI 285 (473)
T ss_pred HHHHHHHHHHcCceeEEeecccccchHHHHHHH
Confidence 23677888999999999999977777766554
No 281
>KOG0085|consensus
Probab=98.83 E-value=9.1e-10 Score=102.77 Aligned_cols=98 Identities=22% Similarity=0.445 Sum_probs=75.4
Q ss_pred CCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhh
Q psy2970 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLL 129 (329)
Q Consensus 50 ~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (329)
.||+|+.-..++..++.+.+.|++||..-+..|.++++++..+++-- +.+-|+.
T Consensus 184 vPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLv------------aLSEYDQ-------------- 237 (359)
T KOG0085|consen 184 VPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLV------------ALSEYDQ-------------- 237 (359)
T ss_pred cCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHH------------HHHHHHH--------------
Confidence 46666666667778888999999999988999999999988887211 1111211
Q ss_pred cceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh
Q psy2970 130 FQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 130 ~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~ 178 (329)
..+...+.+.+++.+.++.-++..+|+.+.++|+++||.|+-++
T Consensus 238 -----vL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEe 281 (359)
T KOG0085|consen 238 -----VLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEE 281 (359)
T ss_pred -----HHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhhh
Confidence 22334567789999999999999999999999999999998653
No 282
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.6e-08 Score=103.10 Aligned_cols=147 Identities=20% Similarity=0.192 Sum_probs=100.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCceeeeEEEeeC-ceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQD----MIPTVGFNMRKITK-GNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~----~~pTig~~~~~i~~-~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
+..=|+++|.-.-|||||+..+-+...... ..+.+|--....+. +.-.+.+.||||++.|..++..=..-+|.++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 345689999999999999999987776432 22333332222221 3457899999999999999877777777777
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|+|+.|--. ..-.+.+++....++|++|..||+
T Consensus 84 -----------------------------------------LVVa~dDGv~-----pQTiEAI~hak~a~vP~iVAiNKi 117 (509)
T COG0532 84 -----------------------------------------LVVAADDGVM-----PQTIEAINHAKAAGVPIVVAINKI 117 (509)
T ss_pred -----------------------------------------EEEEccCCcc-----hhHHHHHHHHHHCCCCEEEEEecc
Confidence 9999987311 111122222234789999999999
Q ss_pred CCCChh--hHHH-------HHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNAL--DEKE-------LIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~~--e~~~-------l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|.++.. .... ..++++ ..++++||+++.+..+++..+.
T Consensus 118 Dk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 118 DKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred cCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHH
Confidence 998651 1111 123333 5799999999888888887764
No 283
>KOG1145|consensus
Probab=98.76 E-value=4.9e-08 Score=99.98 Aligned_cols=147 Identities=19% Similarity=0.229 Sum_probs=105.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC----CCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS----QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~----~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
-++.--|.+.|--.-|||||+..|-+..+. ....+.+|--...++ ++-.+.|.||||+..|..|+..-.+-+|.+
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 345567999999999999999999877664 122244454444455 457889999999999999988777888888
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|+.+.|- ++..-.+.+......++|++|..||
T Consensus 229 V-----------------------------------------LVVAadDG-----VmpQT~EaIkhAk~A~VpiVvAinK 262 (683)
T KOG1145|consen 229 V-----------------------------------------LVVAADDG-----VMPQTLEAIKHAKSANVPIVVAINK 262 (683)
T ss_pred E-----------------------------------------EEEEccCC-----ccHhHHHHHHHHHhcCCCEEEEEec
Confidence 8 99988772 2233333344445578999999999
Q ss_pred CCCCChhh--H-HH------HHHHhC--CcEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNALD--E-KE------LIDRIM--IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~~e--~-~~------l~~~~~--~~~~etSAk~~~~~~~~l~~i 210 (329)
||.+++.- . ++ ..+++| ++.+++||+++.+.+.+.+.+
T Consensus 263 iDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eai 311 (683)
T KOG1145|consen 263 IDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAI 311 (683)
T ss_pred cCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHH
Confidence 99987621 1 11 123343 689999999988777776655
No 284
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.73 E-value=3.3e-07 Score=90.84 Aligned_cols=73 Identities=26% Similarity=0.345 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-CCceeeeEEEe--eCc---------------eEEEEEEecCCCcccc--
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDM-IPTVGFNMRKI--TKG---------------NVTIKVWDIGGQPRFR-- 79 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~-~pTig~~~~~i--~~~---------------~~~l~I~DtpG~e~~~-- 79 (329)
++|.++|.||||||||+|++++.+.. ..+ ..|+......+ ... ..++.+.|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999987743 122 23334333221 111 1258999999965321
Q ss_pred --ch---HHHHhhccceeE
Q psy2970 80 --SM---WERYCRGVNAIV 93 (329)
Q Consensus 80 --~~---~~~~~~~ad~iI 93 (329)
.+ .-..++++|+++
T Consensus 83 g~glg~~fL~~i~~aD~li 101 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIV 101 (364)
T ss_pred HHHHHHHHHHHHHhCCEEE
Confidence 11 223467899998
No 285
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.73 E-value=1.7e-07 Score=85.56 Aligned_cols=146 Identities=15% Similarity=0.048 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCC----CCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDM----IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~----~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++|+|+|..|+||||++|.+++.+..... .-|..........++..+.++||||.-+-....+...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~---------- 70 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEII---------- 70 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHH----------
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHH----------
Confidence 58999999999999999999987754221 2243444444566778899999999643322111000
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc-cHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~-S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+.+.++..... .+.+++++|+.++... .-.....++.++...... .-++||.+..|.
T Consensus 71 ------~~i~~~l~~~~--------------~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~ 128 (212)
T PF04548_consen 71 ------REIKRCLSLCS--------------PGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADE 128 (212)
T ss_dssp ------HHHHHHHHHTT--------------T-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGG
T ss_pred ------HHHHHHHHhcc--------------CCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH--hHhhHHhhhccc
Confidence 11111111111 1223444999988332 123334455555443211 237777887775
Q ss_pred CChh------------hHHHHHHHhCCcEEEEecc
Q psy2970 176 PNAL------------DEKELIDRIMIDFWITLTL 198 (329)
Q Consensus 176 ~~~~------------e~~~l~~~~~~~~~etSAk 198 (329)
.... .++++.++.+-.|.....+
T Consensus 129 ~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~ 163 (212)
T PF04548_consen 129 LEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNK 163 (212)
T ss_dssp GTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTT
T ss_pred cccccHHHHHhccCchhHhHHhhhcCCEEEEEecc
Confidence 4431 2455666777777777666
No 286
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.71 E-value=1.5e-08 Score=94.68 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=28.6
Q ss_pred CCCcEEEEEEcCCCCChh---------h---------------HHHHHHHh---C-C-cEEEEeccchHHHHHHhhhhc
Q psy2970 162 IGIPILVLGNKRDLPNAL---------D---------------EKELIDRI---M-I-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~~---------e---------------~~~l~~~~---~-~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+.|.+.|.||+|+.++. + .+++++-+ + . .++..|+++....+.++..+.
T Consensus 155 ~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id 233 (238)
T PF03029_consen 155 LELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAID 233 (238)
T ss_dssp HTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHH
T ss_pred CCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHH
Confidence 478999999999998721 0 11222222 2 3 688889998888888776654
No 287
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.71 E-value=9.2e-08 Score=89.58 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=72.6
Q ss_pred ccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc-cHHHHHHHHHH
Q psy2970 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD-KLEASRNELHA 154 (329)
Q Consensus 76 e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~-S~~~~~~~l~~ 154 (329)
++++.+.+.+++++|.++ +|+|++++. +++.+..|+..
T Consensus 24 eR~~~L~r~~~~n~D~vi-----------------------------------------iV~d~~~p~~s~~~l~r~l~~ 62 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIV-----------------------------------------IVSSAVLPELSLNQLDRFLVV 62 (245)
T ss_pred cccceEECcccccCCEEE-----------------------------------------EEEECCCCCCCHHHHHHHHHH
Confidence 677777788999999999 999999887 89999888875
Q ss_pred HHhCCcCCCCcEEEEEEcCCCCChhh----HHHHHHHhCCcEEEEeccchHHHHHHhhhhcC
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLPNALD----EKELIDRIMIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~~~~e----~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
+.. .++|+++|+||+||.+..+ ..+..++.+++++++||+++.+.+++++.+..
T Consensus 63 ~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 63 AEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHH----CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHhhhcC
Confidence 532 5799999999999975422 12233457889999999998888888877653
No 288
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.70 E-value=4.2e-07 Score=91.39 Aligned_cols=161 Identities=15% Similarity=0.126 Sum_probs=86.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC----CCC-----------------CCCCCceeeeE---EE-----eeCceEEEE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG----QFS-----------------QDMIPTVGFNM---RK-----ITKGNVTIK 68 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~----~~~-----------------~~~~pTig~~~---~~-----i~~~~~~l~ 68 (329)
..++.|.++|+.++|||||+|+|++. +.. ...+.|++..+ .. .++-..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 46799999999999999999999886 322 12224555544 22 245567899
Q ss_pred EEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCC------CchhhhhhhcceeEEEE-ECC-
Q psy2970 69 VWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV------SGPMWLSLLFQLIKYMV-DAA- 140 (329)
Q Consensus 69 I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~lV~-Dvt- 140 (329)
+.||+|...-..+- ...+++ -|++..=|-.-.+++ .-+..+.--.++.++|. |.+
T Consensus 95 lIDcvG~~v~GalG---------------~~r~~k--~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi 157 (492)
T TIGR02836 95 LVDCVGYTVKGALG---------------YMEEDK--PRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTI 157 (492)
T ss_pred EEECCCcccCCCcc---------------ceeccc--cccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCc
Confidence 99999954321110 000000 000000000000000 00011111112223776 653
Q ss_pred -C--cccH-HHHHHHHHHHHhCCcCCCCcEEEEEEcCC-CCCh-h-hHHHHHHHhCCcEEEEeccc
Q psy2970 141 -D--TDKL-EASRNELHALIEKPQLIGIPILVLGNKRD-LPNA-L-DEKELIDRIMIDFWITLTLL 199 (329)
Q Consensus 141 -~--~~S~-~~~~~~l~~i~~~~~~~~iPIiLVgNK~D-l~~~-~-e~~~l~~~~~~~~~etSAk~ 199 (329)
+ ++.+ +.-..++.++.+ .++|+++|.||.| ...+ . -.+++.++++++++.+|...
T Consensus 158 ~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 158 TDIPREDYVEAEERVIEELKE----LNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred cccccccchHHHHHHHHHHHh----cCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHH
Confidence 1 1222 233344555533 5899999999999 4333 2 24577888999988888876
No 289
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.67 E-value=1.4e-07 Score=103.96 Aligned_cols=132 Identities=18% Similarity=0.168 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHcCCCCCCC----CCceeeeEEEeeC-c----------eE-----EEEEEecCCCccccchHHHHhhccc
Q psy2970 31 SGKTTFVNVIASGQFSQDM----IPTVGFNMRKITK-G----------NV-----TIKVWDIGGQPRFRSMWERYCRGVN 90 (329)
Q Consensus 31 vGKSSLin~l~~~~~~~~~----~pTig~~~~~i~~-~----------~~-----~l~I~DtpG~e~~~~~~~~~~~~ad 90 (329)
++||||+.++.+....... .+.+|......+. + .. .+.+|||||++.|..+.......+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 4699999999887664221 2333332222211 0 11 2799999999999888777788899
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
+++ +|+|+++ +.+++.+. ++.. .++|++
T Consensus 552 ivl-----------------------------------------LVVDa~~Gi~~qT~e~I~-----~lk~---~~iPiI 582 (1049)
T PRK14845 552 LAV-----------------------------------------LVVDINEGFKPQTIEAIN-----ILRQ---YKTPFV 582 (1049)
T ss_pred EEE-----------------------------------------EEEECcccCCHhHHHHHH-----HHHH---cCCCEE
Confidence 999 9999986 33433332 2222 368999
Q ss_pred EEEEcCCCCCh-h-----------------hHHHHH----------H-------------Hh--CCcEEEEeccchHHHH
Q psy2970 168 VLGNKRDLPNA-L-----------------DEKELI----------D-------------RI--MIDFWITLTLLIRWCE 204 (329)
Q Consensus 168 LVgNK~Dl~~~-~-----------------e~~~l~----------~-------------~~--~~~~~etSAk~~~~~~ 204 (329)
+|+||+|+... . ..+++. . ++ .++++++||+++.+.+
T Consensus 583 VViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId 662 (1049)
T PRK14845 583 VAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIP 662 (1049)
T ss_pred EEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHH
Confidence 99999999531 0 011111 1 11 2579999999988888
Q ss_pred HHhhhhc
Q psy2970 205 SFLHHFG 211 (329)
Q Consensus 205 ~~l~~i~ 211 (329)
.++..+.
T Consensus 663 ~Ll~~l~ 669 (1049)
T PRK14845 663 ELLMMVA 669 (1049)
T ss_pred HHHHHHH
Confidence 8776553
No 290
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.66 E-value=2.6e-07 Score=94.33 Aligned_cols=62 Identities=19% Similarity=0.423 Sum_probs=44.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--Eee----CceEEEEEEecCCCccccchHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KIT----KGNVTIKVWDIGGQPRFRSMWE 83 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~----~~~~~l~I~DtpG~e~~~~~~~ 83 (329)
.+-.|+|+|+.++|||||+.+|.+.+ .+.++.+..|. .+. .+..++.+|-+.|...+..+.+
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk 91 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLK 91 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhc
Confidence 45689999999999999999997644 34456665554 331 2235789999988766666554
No 291
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.61 E-value=4.3e-07 Score=86.96 Aligned_cols=140 Identities=14% Similarity=0.211 Sum_probs=73.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCC----------CCCceeeeEEE--e--eCceEEEEEEecCCCccccc---hH
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQD----------MIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS---MW 82 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~----------~~pTig~~~~~--i--~~~~~~l~I~DtpG~e~~~~---~~ 82 (329)
.++|+|+|.+|+|||||+|.|++...... ..++....... + ++..+.+.++||||.-+... .|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 58999999999999999999998655322 11233333322 2 34456889999999432211 11
Q ss_pred ---HHHhhc-cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 83 ---ERYCRG-VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 83 ---~~~~~~-ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
..|+.+ -+..+ +... .+..+...-...+|.+|.++.+...--+.-...++++
T Consensus 84 ~~I~~yI~~qf~~~l--------~eE~-------------~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L--- 139 (281)
T PF00735_consen 84 EPIVDYIESQFDSYL--------EEES-------------KINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL--- 139 (281)
T ss_dssp HHHHHHHHHHHHHHH--------HHHT-------------SSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHH--------HHhh-------------cccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh---
Confidence 111111 00001 0000 0011223344568888999987542212233455555
Q ss_pred CcCCCCcEEEEEEcCCCCChhhHHHHH
Q psy2970 159 PQLIGIPILVLGNKRDLPNALDEKELI 185 (329)
Q Consensus 159 ~~~~~iPIiLVgNK~Dl~~~~e~~~l~ 185 (329)
...+++|-|..|.|.-...|.+.+.
T Consensus 140 --s~~vNvIPvIaKaD~lt~~el~~~k 164 (281)
T PF00735_consen 140 --SKRVNVIPVIAKADTLTPEELQAFK 164 (281)
T ss_dssp --TTTSEEEEEESTGGGS-HHHHHHHH
T ss_pred --cccccEEeEEecccccCHHHHHHHH
Confidence 2457889999999998876655443
No 292
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.61 E-value=9.6e-08 Score=86.57 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=47.2
Q ss_pred hcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh--h---hHHHHHHHhC--CcEEEEeccchH
Q psy2970 129 LFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--L---DEKELIDRIM--IDFWITLTLLIR 201 (329)
Q Consensus 129 ~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~--~---e~~~l~~~~~--~~~~etSAk~~~ 201 (329)
..+..+.|+|+.+.+... .. .... .+.|.++++||+|+.+. . +..+..++++ .+++++||+++.
T Consensus 123 ~~~~~i~Vvd~~~~d~~~--~~-~~~~------~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~ 193 (207)
T TIGR00073 123 GEHMRVVLLSVTEGDDKP--LK-YPGM------FKEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGE 193 (207)
T ss_pred ccCeEEEEEecCcccchh--hh-hHhH------HhhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 344455788987654211 11 1111 34578999999999753 1 2333334444 789999999988
Q ss_pred HHHHHhhhhc
Q psy2970 202 WCESFLHHFG 211 (329)
Q Consensus 202 ~~~~~l~~i~ 211 (329)
+.+++++.+.
T Consensus 194 gv~~l~~~i~ 203 (207)
T TIGR00073 194 GLDEWLEFLE 203 (207)
T ss_pred CHHHHHHHHH
Confidence 8888887664
No 293
>KOG3886|consensus
Probab=98.61 E-value=8.4e-08 Score=89.59 Aligned_cols=155 Identities=21% Similarity=0.330 Sum_probs=100.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEee-CceEEEEEEecCCCccc-----cchHHHHhhccc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRKIT-KGNVTIKVWDIGGQPRF-----RSMWERYCRGVN 90 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~i~-~~~~~l~I~DtpG~e~~-----~~~~~~~~~~ad 90 (329)
.-||++.|.+|+|||++=-.++.+... ....+|+++....+. -+++.+.+||.+||+.+ ....+..+++++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 358999999999999977666654422 334566666555553 34578999999999854 224456677888
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCccc---HHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK---LEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S---~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
+++ +|||++..+- +.....-++.+++. .+...+.
T Consensus 84 vli-----------------------------------------~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF 120 (295)
T KOG3886|consen 84 VLI-----------------------------------------YVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIF 120 (295)
T ss_pred eee-----------------------------------------eeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEE
Confidence 888 9999987542 23333334444443 4667788
Q ss_pred EEEEcCCCCChh-----------hHHHHHHHhCCcEEEEeccchH----HHHHHhhhhcCCCchh
Q psy2970 168 VLGNKRDLPNAL-----------DEKELIDRIMIDFWITLTLLIR----WCESFLHHFGSHPNWA 217 (329)
Q Consensus 168 LVgNK~Dl~~~~-----------e~~~l~~~~~~~~~etSAk~~~----~~~~~l~~i~~~~~~~ 217 (329)
+...|.|+...+ ....+...+++.++.||..+.. |...+.+.+.....|.
T Consensus 121 ~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~TsiwDetl~KAWS~iv~~lipn~~~~e 185 (295)
T KOG3886|consen 121 CLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIWDETLYKAWSSIVYNLIPNVSALE 185 (295)
T ss_pred EEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhCCChHHHH
Confidence 999999997642 1333444556788999988855 4444445444333333
No 294
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.61 E-value=3.6e-07 Score=78.69 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASGQF 45 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~~~ 45 (329)
|+++|..++|||||+|+|++.+.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~i 23 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPI 23 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-
T ss_pred CEEEcCCCCCHHHHHHHHHhccc
Confidence 78999999999999999998774
No 295
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=2.9e-07 Score=91.84 Aligned_cols=144 Identities=21% Similarity=0.235 Sum_probs=93.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcC--CCC-------------------------------CCCCCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASG--QFS-------------------------------QDMIPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~--~~~-------------------------------~~~~pTig~~~~~i~~~ 63 (329)
.+..++++++|...+|||||+-+|+-+ .+. ....-|+.....++..+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 467899999999999999999998531 110 11223444555567778
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
.+.+.|.|+||+.+|-...-.-...||+.| +|+|+.+.+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aV-----------------------------------------LVV~a~~~e 122 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAV-----------------------------------------LVVDARDGE 122 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEE-----------------------------------------EEEECCCCc
Confidence 889999999997776443333455677777 999998753
Q ss_pred cHHH------HHHHHHHHHhCCcCCCC-cEEEEEEcCCCCCh---------hhHHHHHHHhC-----CcEEEEeccchHH
Q psy2970 144 KLEA------SRNELHALIEKPQLIGI-PILVLGNKRDLPNA---------LDEKELIDRIM-----IDFWITLTLLIRW 202 (329)
Q Consensus 144 S~~~------~~~~l~~i~~~~~~~~i-PIiLVgNK~Dl~~~---------~e~~~l~~~~~-----~~~~etSAk~~~~ 202 (329)
|+. ......-+... .++ -++|+.||.|+.+= .+...+.+.+| ++|+.+|+..+.+
T Consensus 123 -fE~g~~~~gQtrEH~~La~t---lGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~N 198 (428)
T COG5256 123 -FEAGFGVGGQTREHAFLART---LGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDN 198 (428)
T ss_pred -cccccccCCchhHHHHHHHh---cCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCc
Confidence 111 11111111111 223 36788999999852 23444666665 4699999999655
Q ss_pred HHH
Q psy2970 203 CES 205 (329)
Q Consensus 203 ~~~ 205 (329)
..+
T Consensus 199 l~~ 201 (428)
T COG5256 199 LTK 201 (428)
T ss_pred ccc
Confidence 444
No 296
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.59 E-value=2.4e-07 Score=100.63 Aligned_cols=112 Identities=17% Similarity=0.119 Sum_probs=76.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCC--CC---------C-------CCCceeeeEEEe----------------eCce
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQF--SQ---------D-------MIPTVGFNMRKI----------------TKGN 64 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~--~~---------~-------~~pTig~~~~~i----------------~~~~ 64 (329)
+--+|+++|..++|||||+.+|+...- .. + ..-|+......+ +.++
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 345899999999999999999974321 00 0 011111111111 2236
Q ss_pred EEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCccc
Q psy2970 65 VTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK 144 (329)
Q Consensus 65 ~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S 144 (329)
..+.++||||+.+|.......++.+|+.+ +|+|+.+.-.
T Consensus 98 ~~inliDtPGh~dF~~e~~~al~~~D~ai-----------------------------------------lVvda~~Gv~ 136 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEVTAALRITDGAL-----------------------------------------VVVDCIEGVC 136 (843)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhhcCEEE-----------------------------------------EEEECCCCCc
Confidence 78899999999999877777889999999 9999876422
Q ss_pred HHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 145 LEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 145 ~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
.. ....++.+. ..++|++++.||+|..
T Consensus 137 ~~-t~~~~~~~~----~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 137 VQ-TETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
T ss_pred cc-HHHHHHHHH----HCCCCEEEEEECCccc
Confidence 22 223334443 2578999999999998
No 297
>PTZ00416 elongation factor 2; Provisional
Probab=98.59 E-value=1e-07 Score=103.47 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=75.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCC--CC-CC---------------CCceeeeEEE--ee--------CceEEEEEE
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQF--SQ-DM---------------IPTVGFNMRK--IT--------KGNVTIKVW 70 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~--~~-~~---------------~pTig~~~~~--i~--------~~~~~l~I~ 70 (329)
+--+|+++|..++|||||+++|+...- .. .. .-|+...... .+ .++..+.+.
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 335999999999999999999975211 10 00 0111110001 11 236789999
Q ss_pred ecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH
Q psy2970 71 DIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN 150 (329)
Q Consensus 71 DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~ 150 (329)
||||..+|.......++.+|+++ +|+|..+.-.- ....
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ai-----------------------------------------lVvda~~g~~~-~t~~ 135 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGAL-----------------------------------------VVVDCVEGVCV-QTET 135 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEE-----------------------------------------EEEECCCCcCc-cHHH
Confidence 99999988777777889999999 99998763221 2223
Q ss_pred HHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 151 ELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 151 ~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
.++.+.+ .++|++++.||+|+.
T Consensus 136 ~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 136 VLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred HHHHHHH----cCCCEEEEEEChhhh
Confidence 3444433 468999999999997
No 298
>KOG1707|consensus
Probab=98.57 E-value=5.9e-07 Score=92.64 Aligned_cols=145 Identities=14% Similarity=0.175 Sum_probs=97.2
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeE----EEeeCceEEEEEEecCCCccccchHHH
Q psy2970 9 LDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNM----RKITKGNVTIKVWDIGGQPRFRSMWER 84 (329)
Q Consensus 9 ~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~----~~i~~~~~~l~I~DtpG~e~~~~~~~~ 84 (329)
+|.-+.+..++-+++.++|+.++|||.+++++.++.+...+..+....+ ..+.+..-.+.+-|.+-. ....+...
T Consensus 414 ~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~k 492 (625)
T KOG1707|consen 414 LDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSK 492 (625)
T ss_pred hhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCc
Confidence 3433344456678999999999999999999999887655544444322 223344444555555533 11111111
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
. ..+|.+. ++||.+++.+|+.....+..-.. ..++
T Consensus 493 e-~~cDv~~-----------------------------------------~~YDsS~p~sf~~~a~v~~~~~~---~~~~ 527 (625)
T KOG1707|consen 493 E-AACDVAC-----------------------------------------LVYDSSNPRSFEYLAEVYNKYFD---LYKI 527 (625)
T ss_pred c-ceeeeEE-----------------------------------------EecccCCchHHHHHHHHHHHhhh---ccCC
Confidence 1 4455555 99999999999998887665533 2789
Q ss_pred cEEEEEEcCCCCCh-----hhHHHHHHHhCCc-EEEEeccc
Q psy2970 165 PILVLGNKRDLPNA-----LDEKELIDRIMID-FWITLTLL 199 (329)
Q Consensus 165 PIiLVgNK~Dl~~~-----~e~~~l~~~~~~~-~~etSAk~ 199 (329)
|+++|+.|+|+.+. .+..+++++++++ -.-.|.+.
T Consensus 528 Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~ 568 (625)
T KOG1707|consen 528 PCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKT 568 (625)
T ss_pred ceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCC
Confidence 99999999999875 3468999999985 45555553
No 299
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.55 E-value=8.6e-07 Score=94.97 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=74.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCC--CC---------CC-------CCceeeeEE----EeeCceEEEEEEecCCCc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQF--SQ---------DM-------IPTVGFNMR----KITKGNVTIKVWDIGGQP 76 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~--~~---------~~-------~pTig~~~~----~i~~~~~~l~I~DtpG~e 76 (329)
+--+|+++|..++|||||+.+|+...- .. ++ .-|+..... ..+.++..+.+.||||..
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 334799999999999999999974211 10 00 011111111 123457889999999999
Q ss_pred cccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHH
Q psy2970 77 RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALI 156 (329)
Q Consensus 77 ~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~ 156 (329)
+|.......++.+|+++ +|+|....-. ......+....
T Consensus 99 df~~~~~~~l~~~D~av-----------------------------------------lVvda~~g~~-~~t~~~~~~~~ 136 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAI-----------------------------------------VVVDAVEGVM-PQTETVLRQAL 136 (731)
T ss_pred ChHHHHHHHHHhcCEEE-----------------------------------------EEEECCCCCC-ccHHHHHHHHH
Confidence 98777788889999999 9999875422 12223333332
Q ss_pred hCCcCCCCcEEEEEEcCCCCC
Q psy2970 157 EKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 157 ~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+ .+.|.+++.||+|...
T Consensus 137 ~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 137 R----ERVKPVLFINKVDRLI 153 (731)
T ss_pred H----cCCCeEEEEECchhhc
Confidence 2 2467899999999863
No 300
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.52 E-value=7.6e-07 Score=87.29 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=48.1
Q ss_pred hhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh----HHHHHHHhC----------CcE
Q psy2970 127 SLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD----EKELIDRIM----------IDF 192 (329)
Q Consensus 127 ~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e----~~~l~~~~~----------~~~ 192 (329)
....|+++++.+....+.+..... .+++. .-++|.||+|+.+... ..++.+.+. .++
T Consensus 167 ~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~------aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pV 237 (332)
T PRK09435 167 AGMVDFFLLLQLPGAGDELQGIKK---GIMEL------ADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPV 237 (332)
T ss_pred HHhCCEEEEEecCCchHHHHHHHh---hhhhh------hheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCE
Confidence 334444448866444333333322 23222 2379999999876422 223333332 579
Q ss_pred EEEeccchHHHHHHhhhhcCCCchhh
Q psy2970 193 WITLTLLIRWCESFLHHFGSHPNWAV 218 (329)
Q Consensus 193 ~etSAk~~~~~~~~l~~i~~~~~~~~ 218 (329)
+.+||+++.+.+++.+.+..+..+..
T Consensus 238 i~vSA~~g~GIdeL~~~I~~~~~~l~ 263 (332)
T PRK09435 238 LTCSALEGEGIDEIWQAIEDHRAALT 263 (332)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 99999998888888877765544333
No 301
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.51 E-value=3.2e-07 Score=78.47 Aligned_cols=132 Identities=16% Similarity=0.149 Sum_probs=86.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchH----HHHhhccceeEeecc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW----ERYCRGVNAIVWTGG 97 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~----~~~~~~ad~iI~~~~ 97 (329)
||+++|..|+|||||.+++.+.+... .-|-.+.+. .+ -..||||..--+..| -....++|.++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly--kKTQAve~~---d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~---- 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY--KKTQAVEFN---DK----GDIDTPGEYFEHPRWYHALITTLQDADVII---- 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh--cccceeecc---Cc----cccCCchhhhhhhHHHHHHHHHhhccceee----
Confidence 68999999999999999999877542 233333321 11 157999954333333 22345677777
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|-.+.++++. ..--+.. ....|+|-|.+|.|+++
T Consensus 70 -------------------------------------~v~~and~~s~--f~p~f~~------~~~k~vIgvVTK~DLae 104 (148)
T COG4917 70 -------------------------------------YVHAANDPESR--FPPGFLD------IGVKKVIGVVTKADLAE 104 (148)
T ss_pred -------------------------------------eeecccCcccc--CCccccc------ccccceEEEEecccccc
Confidence 88888887641 1111111 13456899999999996
Q ss_pred hhh---HHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 178 ALD---EKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 178 ~~e---~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
..+ .+++..+-|. +.|++|+...+..+++.+.+.
T Consensus 105 d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 105 DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHH
Confidence 533 4455555564 699999999888888876654
No 302
>KOG0099|consensus
Probab=98.47 E-value=1.8e-07 Score=88.83 Aligned_cols=77 Identities=25% Similarity=0.471 Sum_probs=64.8
Q ss_pred eeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEEC
Q psy2970 60 ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139 (329)
Q Consensus 60 i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dv 139 (329)
+..+.++++++|++||.+-+..|..++.++.++| +|+..
T Consensus 197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAii-----------------------------------------fv~ac 235 (379)
T KOG0099|consen 197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAII-----------------------------------------FVVAC 235 (379)
T ss_pred EeccccceeeeccCCchhhhhhHHHHhcCccEEE-----------------------------------------EEEec
Confidence 4455677999999999999999999999999999 44433
Q ss_pred C----------CcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 140 A----------DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 140 t----------~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+ .++.+.+...+++.+.+..+...+.+||++||.|+..
T Consensus 236 Ssyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDlla 283 (379)
T KOG0099|consen 236 SSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 283 (379)
T ss_pred cchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHHH
Confidence 2 2457888899999999999999999999999999854
No 303
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=2.5e-06 Score=84.39 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-----CCceeeeEEE----------ee----CceEEEEEEecCCCccc-
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS-QDM-----IPTVGFNMRK----------IT----KGNVTIKVWDIGGQPRF- 78 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~-~~~-----~pTig~~~~~----------i~----~~~~~l~I~DtpG~e~~- 78 (329)
.+++-++|.||||||||.|+++..... ..| .|-+|..+.. +. ....++++.|++|.-.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999987643 222 2334433321 11 12346899999986432
Q ss_pred ------cchHHHHhhccceeE
Q psy2970 79 ------RSMWERYCRGVNAIV 93 (329)
Q Consensus 79 ------~~~~~~~~~~ad~iI 93 (329)
.+..-..+|++|+++
T Consensus 82 s~GeGLGNkFL~~IRevdaI~ 102 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAII 102 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEE
Confidence 334455678999999
No 304
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.44 E-value=6.5e-07 Score=89.02 Aligned_cols=108 Identities=16% Similarity=0.290 Sum_probs=54.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCC------CceeeeEEEeeCceE-EEEEEecCCCccccchHHHHhhc-
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMI------PTVGFNMRKITKGNV-TIKVWDIGGQPRFRSMWERYCRG- 88 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~------pTig~~~~~i~~~~~-~l~I~DtpG~e~~~~~~~~~~~~- 88 (329)
..+++|+|+|.+|+|||||||++-+-.-. +... .|.... .+....+ .+.+||+||.....-....|++.
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~--~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPT--PYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-E--EEE-SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCe--eCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 45799999999999999999999652211 1111 111111 1111222 47899999964433334445443
Q ss_pred ----cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 89 ----VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 89 ----ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
-|.+| ++.+- .|.....++...++. .+.
T Consensus 111 ~~~~yD~fi-----------------------------------------ii~s~----rf~~ndv~La~~i~~---~gK 142 (376)
T PF05049_consen 111 KFYRYDFFI-----------------------------------------IISSE----RFTENDVQLAKEIQR---MGK 142 (376)
T ss_dssp TGGG-SEEE-----------------------------------------EEESS----S--HHHHHHHHHHHH---TT-
T ss_pred cccccCEEE-----------------------------------------EEeCC----CCchhhHHHHHHHHH---cCC
Confidence 44444 44442 344444444444343 578
Q ss_pred cEEEEEEcCCC
Q psy2970 165 PILVLGNKRDL 175 (329)
Q Consensus 165 PIiLVgNK~Dl 175 (329)
|+.+|-+|+|.
T Consensus 143 ~fyfVRTKvD~ 153 (376)
T PF05049_consen 143 KFYFVRTKVDS 153 (376)
T ss_dssp EEEEEE--HHH
T ss_pred cEEEEEecccc
Confidence 99999999996
No 305
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.42 E-value=2.3e-06 Score=82.29 Aligned_cols=51 Identities=18% Similarity=0.069 Sum_probs=34.2
Q ss_pred CCCcEEEEEEcCCCCChhhHH-----------HHHHH---hCCcEEEEeccchHHHHHHhhhhcC
Q psy2970 162 IGIPILVLGNKRDLPNALDEK-----------ELIDR---IMIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~~e~~-----------~l~~~---~~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
.++|.++|.||+|+....+.. .+.++ +..+++.+||++....+.+...+..
T Consensus 171 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~ 235 (300)
T TIGR00750 171 MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEE 235 (300)
T ss_pred hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHH
Confidence 346779999999998754321 11111 2246899999997777777766644
No 306
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.40 E-value=9.9e-07 Score=78.57 Aligned_cols=56 Identities=21% Similarity=0.393 Sum_probs=38.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEeeCceEEEEEEecCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF-SQDMIPTVGFNMRKITKGNVTIKVWDIGG 74 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~-~~~~~pTig~~~~~i~~~~~~l~I~DtpG 74 (329)
+..++++++|.||||||||+|++.+... .....|.+......+..+ -.+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-KKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-CCEEEEECcC
Confidence 4458999999999999999999998665 223333333333333221 2578999999
No 307
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.40 E-value=1.7e-06 Score=87.67 Aligned_cols=133 Identities=20% Similarity=0.285 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--CCC------------CCCceeeeEE----EeeCceEEEEEEecCCCccccchH
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQF--SQD------------MIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMW 82 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~--~~~------------~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~ 82 (329)
-+|+++-.-.-|||||+.+++.+.. ... ....-|+.+. .+..++++++|.||||+.+|....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 3688898889999999999986432 110 0011112221 267888999999999999999988
Q ss_pred HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCC
Q psy2970 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLI 162 (329)
Q Consensus 83 ~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~ 162 (329)
+..+.-+|+++ +++|+.+- .+...+-.++..++ .
T Consensus 86 ERvl~MVDgvl-----------------------------------------LlVDA~EG-pMPQTrFVlkKAl~----~ 119 (603)
T COG1217 86 ERVLSMVDGVL-----------------------------------------LLVDASEG-PMPQTRFVLKKALA----L 119 (603)
T ss_pred hhhhhhcceEE-----------------------------------------EEEEcccC-CCCchhhhHHHHHH----c
Confidence 88999999999 99998752 23333444444443 3
Q ss_pred CCcEEEEEEcCCCCCh------hhHHHHH-------HHhCCcEEEEeccc
Q psy2970 163 GIPILVLGNKRDLPNA------LDEKELI-------DRIMIDFWITLTLL 199 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~------~e~~~l~-------~~~~~~~~etSAk~ 199 (329)
+.+-|||.||+|.+++ ++.-++- ++++.|.+..|++.
T Consensus 120 gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~ 169 (603)
T COG1217 120 GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARN 169 (603)
T ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccC
Confidence 5566799999999886 2222332 34557889999887
No 308
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.37 E-value=2.6e-06 Score=77.42 Aligned_cols=72 Identities=21% Similarity=0.129 Sum_probs=47.0
Q ss_pred hcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE--EEEEEcCCCCCh-----hhHHHHHHH--hCCcEEEEeccc
Q psy2970 129 LFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI--LVLGNKRDLPNA-----LDEKELIDR--IMIDFWITLTLL 199 (329)
Q Consensus 129 ~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI--iLVgNK~Dl~~~-----~e~~~l~~~--~~~~~~etSAk~ 199 (329)
+.+.++.|+|+++.++... ... ..+.. ++++||+|+.+. ...++..+. .+.+++++||++
T Consensus 112 l~~~~i~vvD~~~~~~~~~---~~~--------~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~ 180 (199)
T TIGR00101 112 LADLTIFVIDVAAGDKIPR---KGG--------PGITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKT 180 (199)
T ss_pred hhCcEEEEEEcchhhhhhh---hhH--------hHhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCC
Confidence 3566889999987554221 111 12223 789999999753 122333343 347899999999
Q ss_pred hHHHHHHhhhhc
Q psy2970 200 IRWCESFLHHFG 211 (329)
Q Consensus 200 ~~~~~~~l~~i~ 211 (329)
+.+.+++++.+.
T Consensus 181 g~gi~el~~~i~ 192 (199)
T TIGR00101 181 KEGLDTVIDWIE 192 (199)
T ss_pred CCCHHHHHHHHH
Confidence 888888887665
No 309
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.35 E-value=2e-06 Score=74.23 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEeeCceEEEEEEecCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRKITKGNVTIKVWDIGG 74 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~i~~~~~~l~I~DtpG 74 (329)
+...|+++|.||||||||+|++.+.... ....|........+... -.+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLM-KRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcC-CCEEEEECcC
Confidence 5688999999999999999999986542 22222222222222211 1367999999
No 310
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.32 E-value=1.4e-05 Score=75.21 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.--+++++|+.|+||||+++.+.+..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCC
Confidence 34589999999999999999999865
No 311
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.29 E-value=1.9e-06 Score=76.58 Aligned_cols=56 Identities=27% Similarity=0.423 Sum_probs=37.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCC---------CCCCCCceeeeEEEeeCceEEEEEEecCCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQF---------SQDMIPTVGFNMRKITKGNVTIKVWDIGGQ 75 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~---------~~~~~pTig~~~~~i~~~~~~l~I~DtpG~ 75 (329)
++.+++++|.+|||||||+|++.+... .....|.+......+..+. .+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcCC
Confidence 457899999999999999999987432 2222333333333333222 4789999993
No 312
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=2.8e-06 Score=85.52 Aligned_cols=127 Identities=20% Similarity=0.255 Sum_probs=90.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc--CCC--------------C--------CCCCCceeeeEEEeeCceEEEEEEecCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS--GQF--------------S--------QDMIPTVGFNMRKITKGNVTIKVWDIGG 74 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~--~~~--------------~--------~~~~pTig~~~~~i~~~~~~l~I~DtpG 74 (329)
++-..+++--|.+|||||..+++- +-+ . .+..-.+...+.++++++..+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 445678899999999999999852 111 0 1111222233446789999999999999
Q ss_pred CccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHH
Q psy2970 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHA 154 (329)
Q Consensus 75 ~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~ 154 (329)
+++|..-.-..+..+|..+ +|+|+..- .+.....+-+
T Consensus 91 HeDFSEDTYRtLtAvDsAv-----------------------------------------MVIDaAKG--iE~qT~KLfe 127 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAV-----------------------------------------MVIDAAKG--IEPQTLKLFE 127 (528)
T ss_pred ccccchhHHHHHHhhheee-----------------------------------------EEEecccC--ccHHHHHHHH
Confidence 9999888777788899999 99998752 2333333344
Q ss_pred HHhCCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLPNA---LDEKELIDRIMID 191 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~ 191 (329)
+.+ ..++||+-+.||.|.+.. +-++++.+++++.
T Consensus 128 Vcr---lR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~ 164 (528)
T COG4108 128 VCR---LRDIPIFTFINKLDREGRDPLELLDEIEEELGIQ 164 (528)
T ss_pred HHh---hcCCceEEEeeccccccCChHHHHHHHHHHhCcc
Confidence 433 468999999999998765 3366777888764
No 313
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.28 E-value=1.5e-06 Score=73.93 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEeeCceEEEEEEecCCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQ-DMIPTVGFNMRKITKGNVTIKVWDIGGQ 75 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~-~~~pTig~~~~~i~~~~~~l~I~DtpG~ 75 (329)
-+++++|.+|||||||+|++.++.... ...+..+.....+..+. .+.+|||||.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 489999999999999999999877531 11122222222222211 5789999995
No 314
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.28 E-value=3.7e-06 Score=80.46 Aligned_cols=71 Identities=25% Similarity=0.305 Sum_probs=45.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCC-CC-CCceeeeEEEe--eCc---------------eEEEEEEecCCCcccc----
Q psy2970 23 LTLVGLQCSGKTTFVNVIASGQFSQ-DM-IPTVGFNMRKI--TKG---------------NVTIKVWDIGGQPRFR---- 79 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~~~~~-~~-~pTig~~~~~i--~~~---------------~~~l~I~DtpG~e~~~---- 79 (329)
|.++|.||||||||+|++++.+... .+ ..|+......+ ... ..++++.|+||..+-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5789999999999999999977632 22 23334333322 111 1258999999965321
Q ss_pred chH---HHHhhccceeE
Q psy2970 80 SMW---ERYCRGVNAIV 93 (329)
Q Consensus 80 ~~~---~~~~~~ad~iI 93 (329)
.+. -..++.+|+++
T Consensus 81 glg~~fL~~i~~~D~li 97 (274)
T cd01900 81 GLGNKFLSHIREVDAIA 97 (274)
T ss_pred HHHHHHHHHHHhCCEEE
Confidence 122 23456799999
No 315
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.26 E-value=8.8e-06 Score=85.94 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=41.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC-CCC-C-CCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQF-SQD-M-IPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~-~~~-~-~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.++|+|+|.+||||||++|.+++.+. ... . ..|+..........+..+.++||||..+.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt 179 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSS 179 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCcc
Confidence 46899999999999999999998763 221 1 23443322222334578999999997654
No 316
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.21 E-value=5.4e-06 Score=72.76 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEeeCceEEEEEEecCCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRKITKGNVTIKVWDIGGQ 75 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~i~~~~~~l~I~DtpG~ 75 (329)
...++++++|.+|||||||+|++.+..+. ....+.+......+... ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 45589999999999999999999987753 22222222222222221 45789999994
No 317
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.19 E-value=5.4e-06 Score=71.18 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--EeeCceEEEEEEecCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGG 74 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~~~~~~l~I~DtpG 74 (329)
....+++++|.+|||||||+|++.++... .+.++.|.... .+.. +..+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~-~~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKI-TSKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEc-CCCEEEEECcC
Confidence 35678999999999999999999976532 33444444322 1222 23688999999
No 318
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=1.5e-05 Score=85.06 Aligned_cols=125 Identities=23% Similarity=0.219 Sum_probs=84.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc--CCCCC------------------CCCCceeeeEEEeeCc-eEEEEEEecCCCcc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS--GQFSQ------------------DMIPTVGFNMRKITKG-NVTIKVWDIGGQPR 77 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~--~~~~~------------------~~~pTig~~~~~i~~~-~~~l~I~DtpG~e~ 77 (329)
+--+|.++|.-.+|||||..+++- +.... ...-|+......+..+ ++.+++.||||+-+
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 445899999999999999999963 11110 0011222222234455 59999999999999
Q ss_pred ccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh
Q psy2970 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE 157 (329)
Q Consensus 78 ~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~ 157 (329)
|.......++-.|+.+ +|+|+..--..+.- ..+++..
T Consensus 89 Ft~EV~rslrvlDgav-----------------------------------------vVvdaveGV~~QTE-tv~rqa~- 125 (697)
T COG0480 89 FTIEVERSLRVLDGAV-----------------------------------------VVVDAVEGVEPQTE-TVWRQAD- 125 (697)
T ss_pred cHHHHHHHHHhhcceE-----------------------------------------EEEECCCCeeecHH-HHHHHHh-
Confidence 9998889999999999 99998753222222 2333332
Q ss_pred CCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhC
Q psy2970 158 KPQLIGIPILVLGNKRDLPNA---LDEKELIDRIM 189 (329)
Q Consensus 158 ~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~ 189 (329)
..++|.+++.||.|.... ...+++.+.++
T Consensus 126 ---~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~ 157 (697)
T COG0480 126 ---KYGVPRILFVNKMDRLGADFYLVVEQLKERLG 157 (697)
T ss_pred ---hcCCCeEEEEECccccccChhhhHHHHHHHhC
Confidence 357999999999998765 23444444444
No 319
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.16 E-value=9.2e-06 Score=77.66 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=39.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEeeCceEEEEEEecCCCc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF-SQDMIPTVGFNMRKITKGNVTIKVWDIGGQP 76 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~-~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e 76 (329)
++.++++++|.||||||||+|++.+.+. .....|.++.....+..+ -.+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG-KGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC-CcEEEEECCCcC
Confidence 4568999999999999999999998765 222233333333323221 247899999964
No 320
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.14 E-value=7.7e-06 Score=77.70 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=38.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEeeCceEEEEEEecCCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRKITKGNVTIKVWDIGGQ 75 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~i~~~~~~l~I~DtpG~ 75 (329)
.+.++++++|.||||||||+|++.+.... ....|.++.....+... -.+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 45689999999999999999999986642 22222222222222221 14689999997
No 321
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.14 E-value=1.1e-05 Score=77.73 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=35.0
Q ss_pred CCcEEEEEEcCCCCCh--hhHHHHHH---Hh--CCcEEEEeccchHHHHHHhhhhc
Q psy2970 163 GIPILVLGNKRDLPNA--LDEKELID---RI--MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~--~e~~~l~~---~~--~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
..+-++|+||+|+... .+.+++.+ ++ ..+.+++||+++...+++.+.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~ 285 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLE 285 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999763 23333333 33 37899999999888888877654
No 322
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.10 E-value=2.3e-05 Score=77.27 Aligned_cols=140 Identities=17% Similarity=0.195 Sum_probs=91.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC------------------------C-----------CCCCCCceeeeEEEee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ------------------------F-----------SQDMIPTVGFNMRKIT 61 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~------------------------~-----------~~~~~pTig~~~~~i~ 61 (329)
.+..++++-.|.-.=||||||-|++.+. + .....-|+.+.|+-+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 4567899999999999999999985310 0 0123456677777787
Q ss_pred CceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC
Q psy2970 62 KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD 141 (329)
Q Consensus 62 ~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~ 141 (329)
-..-++.|-||||++.|...-..-...||..| +++|+-.
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAI-----------------------------------------lLVDAR~ 121 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAI-----------------------------------------LLVDARK 121 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEE-----------------------------------------EEEecch
Confidence 78888999999999987432222233456666 9999842
Q ss_pred cccHHHHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCCh---------hhHHHHHHHhCC---cEEEEeccchHH
Q psy2970 142 TDKLEASRNELHALIEKPQLIGIP-ILVLGNKRDLPNA---------LDEKELIDRIMI---DFWITLTLLIRW 202 (329)
Q Consensus 142 ~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~~---------~e~~~l~~~~~~---~~~etSAk~~~~ 202 (329)
-..+...--.-+.. ..++. ++|..||+||.+- .+-..|++++++ .+++.||..+.+
T Consensus 122 --Gvl~QTrRHs~I~s---LLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDN 190 (431)
T COG2895 122 --GVLEQTRRHSFIAS---LLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDN 190 (431)
T ss_pred --hhHHHhHHHHHHHH---HhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCc
Confidence 11111111111111 23444 6778899999873 234567888875 599999998443
No 323
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.08 E-value=7.6e-06 Score=70.27 Aligned_cols=72 Identities=17% Similarity=0.097 Sum_probs=47.4
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHH---HHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKE---LIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~---l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+|++++..... .. +.+... ..+.|+++|+||+|+.+..+.++ +.+..+.+++.+||+++...+++.+.+.
T Consensus 18 ~V~D~~~~~~~~~-~~-l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~ 92 (156)
T cd01859 18 EVLDARDPELTRS-RK-LERYVL---ELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKILRRTIK 92 (156)
T ss_pred EEeeCCCCcccCC-HH-HHHHHH---hCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHHHHHHH
Confidence 9999987643222 11 222222 24689999999999976533322 3344567899999999877887776664
No 324
>KOG0705|consensus
Probab=98.08 E-value=6.5e-06 Score=84.70 Aligned_cols=146 Identities=20% Similarity=0.355 Sum_probs=111.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
-.++|+-++|..++|||+|+.+++.+.+.+.. .+.+-.+++ ++++...+-+.|.+|.. -..|...+|++|
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e-~~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavI- 100 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDE-SPEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVV- 100 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceecccc-CCcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceE-
Confidence 36899999999999999999999999887553 344544443 46777888899998833 245788899999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+||.+.+..+|+.+..+..++........+|.++++++.-
T Consensus 101 ----------------------------------------fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~ 140 (749)
T KOG0705|consen 101 ----------------------------------------FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDH 140 (749)
T ss_pred ----------------------------------------EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcch
Confidence 9999999999999999988887666667899999998843
Q ss_pred CCCh-------hh-HHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-------LD-EKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-------~e-~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.... .+ .+..++...+.++++.|..+...+..++.+
T Consensus 141 iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~ 184 (749)
T KOG0705|consen 141 ISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEV 184 (749)
T ss_pred hhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHH
Confidence 2211 22 334455556889999999966666666544
No 325
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.06 E-value=5.6e-05 Score=74.70 Aligned_cols=57 Identities=25% Similarity=0.390 Sum_probs=42.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCC----------CCCCceeeeEEE--e--eCceEEEEEEecCCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQ----------DMIPTVGFNMRK--I--TKGNVTIKVWDIGGQ 75 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~----------~~~pTig~~~~~--i--~~~~~~l~I~DtpG~ 75 (329)
-.+.|+++|+.|.|||||+|.|++..... ...||+.....+ + ++-.+.+.+.||||.
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGf 92 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGF 92 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCc
Confidence 46899999999999999999998763321 134666666554 3 344567889999995
No 326
>KOG1954|consensus
Probab=98.05 E-value=4.1e-05 Score=75.99 Aligned_cols=116 Identities=22% Similarity=0.248 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEE--------eeCce-------------------------
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRK--------ITKGN------------------------- 64 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~--------i~~~~------------------------- 64 (329)
--|+++|.-..||||||+.+++++++ ....||+..-+.- +++..
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 46999999999999999999999886 2334555422210 11110
Q ss_pred --------EEEEEEecCCCccc-----------cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhh
Q psy2970 65 --------VTIKVWDIGGQPRF-----------RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMW 125 (329)
Q Consensus 65 --------~~l~I~DtpG~e~~-----------~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (329)
-.+.|.||||...- ....+-+...+|.|+
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~Ii-------------------------------- 186 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRII-------------------------------- 186 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEE--------------------------------
Confidence 13788999985432 233344556666666
Q ss_pred hhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhH
Q psy2970 126 LSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE 181 (329)
Q Consensus 126 ~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~ 181 (329)
++||....+--++....+..+... .-.+-||+||.|..+..++
T Consensus 187 ---------LlfD~hKLDIsdEf~~vi~aLkG~----EdkiRVVLNKADqVdtqqL 229 (532)
T KOG1954|consen 187 ---------LLFDAHKLDISDEFKRVIDALKGH----EDKIRVVLNKADQVDTQQL 229 (532)
T ss_pred ---------EEechhhccccHHHHHHHHHhhCC----cceeEEEeccccccCHHHH
Confidence 999987655444555555555443 2347788999999987553
No 327
>PRK12289 GTPase RsgA; Reviewed
Probab=98.03 E-value=1.7e-05 Score=78.42 Aligned_cols=75 Identities=13% Similarity=0.028 Sum_probs=55.6
Q ss_pred EEEECCCcc-cHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHH---HHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 135 YMVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELI---DRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 135 lV~Dvt~~~-S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~---~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+|+.+++ ....+..++..+. ..++|++||+||+||.+..+.+.+. +.++++++.+||++..+.+++++.+
T Consensus 95 lV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L 170 (352)
T PRK12289 95 LVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEALLEQL 170 (352)
T ss_pred EEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHhhhh
Confidence 999998876 4445556655442 3578999999999998765444444 3568899999999988888888777
Q ss_pred cCC
Q psy2970 211 GSH 213 (329)
Q Consensus 211 ~~~ 213 (329)
...
T Consensus 171 ~~k 173 (352)
T PRK12289 171 RNK 173 (352)
T ss_pred ccc
Confidence 543
No 328
>KOG2655|consensus
Probab=98.02 E-value=5.7e-05 Score=74.82 Aligned_cols=57 Identities=28% Similarity=0.362 Sum_probs=41.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCC---------CCCCceeeeEEE--e--eCceEEEEEEecCCCc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQ---------DMIPTVGFNMRK--I--TKGNVTIKVWDIGGQP 76 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~---------~~~pTig~~~~~--i--~~~~~~l~I~DtpG~e 76 (329)
.+.++++|++|.|||||+|.|+..++.. ....|+.+...+ + ++-.+++.+.||||.-
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfG 90 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFG 90 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCc
Confidence 5999999999999999999998765432 122344544444 2 3445678899999953
No 329
>KOG0468|consensus
Probab=98.01 E-value=3e-05 Score=81.44 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=79.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCc---------------eeeeEE---------EeeCceEEEEEEecCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPT---------------VGFNMR---------KITKGNVTIKVWDIGG 74 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pT---------------ig~~~~---------~i~~~~~~l~I~DtpG 74 (329)
.-.++.++|.-..|||+|+..+..+..++...++ -|..++ ..+++.+-+++.||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 3468999999999999999999876543211110 011111 1356677899999999
Q ss_pred CccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHH
Q psy2970 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHA 154 (329)
Q Consensus 75 ~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~ 154 (329)
+-.|.......++-+|+++ +|+|+.+--.+..- ..++.
T Consensus 207 HVnF~DE~ta~l~~sDgvV-----------------------------------------lvvDv~EGVmlntE-r~ikh 244 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVV-----------------------------------------LVVDVAEGVMLNTE-RIIKH 244 (971)
T ss_pred cccchHHHHHHhhhcceEE-----------------------------------------EEEEcccCceeeHH-HHHHH
Confidence 9999888888889999999 99999865444333 33333
Q ss_pred HHhCCcCCCCcEEEEEEcCCCC
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
.+ ..+.|+.+|.||+|..
T Consensus 245 ai----q~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 245 AI----QNRLPIVVVINKVDRL 262 (971)
T ss_pred HH----hccCcEEEEEehhHHH
Confidence 33 3578999999999963
No 330
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=2.5e-05 Score=78.62 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=96.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-----CCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS-----QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~-----~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
-|...|.---|||||++.+++..-. .+...|+...+...+.++..+.+.|+||.+++-.-.-.-....|..+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~al--- 78 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYAL--- 78 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEE---
Confidence 3566777888999999999875432 33456777777777667779999999998876333222333444445
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc-EEEEEEcCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP-ILVLGNKRDL 175 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl 175 (329)
+|+|.++-- .........+++. .+++ .++|+||+|.
T Consensus 79 --------------------------------------LvV~~deGl--~~qtgEhL~iLdl---lgi~~giivltk~D~ 115 (447)
T COG3276 79 --------------------------------------LVVAADEGL--MAQTGEHLLILDL---LGIKNGIIVLTKADR 115 (447)
T ss_pred --------------------------------------EEEeCccCc--chhhHHHHHHHHh---cCCCceEEEEecccc
Confidence 999985411 1111111122232 3333 5899999999
Q ss_pred CChhhHHHHHHHhC-------CcEEEEeccchHHHHHHhhhhcCCC
Q psy2970 176 PNALDEKELIDRIM-------IDFWITLTLLIRWCESFLHHFGSHP 214 (329)
Q Consensus 176 ~~~~e~~~l~~~~~-------~~~~etSAk~~~~~~~~l~~i~~~~ 214 (329)
.++.+.++..+++. .+++.+|+++++..+++-+.+...+
T Consensus 116 ~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 116 VDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred ccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhh
Confidence 98755555554442 4679999999988888887776444
No 331
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.96 E-value=2.9e-05 Score=67.01 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=38.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCC--CceeeeEEEeeCceEEEEEEecCCC
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQF-SQDMI--PTVGFNMRKITKGNVTIKVWDIGGQ 75 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~-~~~~~--pTig~~~~~i~~~~~~l~I~DtpG~ 75 (329)
..+...++++|.+|||||||+|.+.+... ..... .|.......++ ..+.+.||||.
T Consensus 97 ~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 97 LKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 34678899999999999999999998653 22222 23333222222 35789999993
No 332
>PRK00098 GTPase RsgA; Reviewed
Probab=97.93 E-value=2.4e-05 Score=75.28 Aligned_cols=78 Identities=17% Similarity=0.014 Sum_probs=55.9
Q ss_pred ceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hh---HHHHHHHhCCcEEEEeccchHHHHH
Q psy2970 131 QLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKRDLPNA-LD---EKELIDRIMIDFWITLTLLIRWCES 205 (329)
Q Consensus 131 ~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e---~~~l~~~~~~~~~etSAk~~~~~~~ 205 (329)
+++++|+|+++++++... ..|+..+ . ..++|+++|+||+|+.+. .. ..+..++++++++++||++..+.++
T Consensus 82 D~vllV~d~~~p~~~~~~idr~L~~~-~---~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~ 157 (298)
T PRK00098 82 DQAVLVFAAKEPDFSTDLLDRFLVLA-E---ANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDE 157 (298)
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHH-H---HCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH
Confidence 444499999988766554 4444444 3 257899999999999633 22 3344556788999999999888888
Q ss_pred HhhhhcC
Q psy2970 206 FLHHFGS 212 (329)
Q Consensus 206 ~l~~i~~ 212 (329)
+.+.+..
T Consensus 158 L~~~l~g 164 (298)
T PRK00098 158 LKPLLAG 164 (298)
T ss_pred HHhhccC
Confidence 8877653
No 333
>KOG0461|consensus
Probab=97.92 E-value=0.00017 Score=71.28 Aligned_cols=146 Identities=13% Similarity=0.151 Sum_probs=85.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC----CCC-----CCCCCceeeeEEEe---------eCceEEEEEEecCCCcccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG----QFS-----QDMIPTVGFNMRKI---------TKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~----~~~-----~~~~pTig~~~~~i---------~~~~~~l~I~DtpG~e~~~ 79 (329)
..++++-++|.-.+|||||.+++..- -|. ....-|....+..+ .++.+++.+.|.||+...
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL- 83 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL- 83 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH-
Confidence 45689999999999999999999642 121 11112222223221 456788999999996432
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEK 158 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~ 158 (329)
.+ .+| ..+.++|++++|+|+..-..-+... -.+.++..
T Consensus 84 --IR-------tii-------------------------------ggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c- 122 (522)
T KOG0461|consen 84 --IR-------TII-------------------------------GGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC- 122 (522)
T ss_pred --HH-------HHH-------------------------------hhhheeeeeeEEEehhcccccccchhhhhhhhhc-
Confidence 11 111 2345668888999987532111111 12233322
Q ss_pred CcCCCCcEEEEEEcCCCCCh----hhHHHHH----HHh-------CCcEEEEeccch----HHHHHHhhhh
Q psy2970 159 PQLIGIPILVLGNKRDLPNA----LDEKELI----DRI-------MIDFWITLTLLI----RWCESFLHHF 210 (329)
Q Consensus 159 ~~~~~iPIiLVgNK~Dl~~~----~e~~~l~----~~~-------~~~~~etSAk~~----~~~~~~l~~i 210 (329)
...+||.||+|+-.+ ...++.+ +-+ +.|.+++||+.+ +...++.+.+
T Consensus 123 -----~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l 188 (522)
T KOG0461|consen 123 -----KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEAL 188 (522)
T ss_pred -----cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHH
Confidence 236788888886443 2233333 332 268999999995 4445544444
No 334
>KOG0458|consensus
Probab=97.89 E-value=4e-05 Score=79.33 Aligned_cols=143 Identities=19% Similarity=0.171 Sum_probs=86.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc--------------------CCCC-----------CCC--CCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS--------------------GQFS-----------QDM--IPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~--------------------~~~~-----------~~~--~pTig~~~~~i~~~ 63 (329)
-+..+.++++|.-.+|||||+-+++- ++.. ++. .-|..+....++..
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 34568999999999999999999842 1111 000 11111222236677
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
...+.+.|.||+.+|..-.-.-...+|..+ +|+|++.-
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~av-----------------------------------------Lvvd~s~~- 291 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAV-----------------------------------------LVVDASTG- 291 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEE-----------------------------------------EEEECCcc-
Confidence 788999999998877554444455667777 99998642
Q ss_pred cHHH---H---HHHHHHHHhCCcCCCCcEEEEEEcCCCCC--hhhHHH-------HH-HHhC-----CcEEEEeccchHH
Q psy2970 144 KLEA---S---RNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKE-------LI-DRIM-----IDFWITLTLLIRW 202 (329)
Q Consensus 144 S~~~---~---~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~--~~e~~~-------l~-~~~~-----~~~~etSAk~~~~ 202 (329)
.|+. . ......+++... -.-++|+.||.|+.+ ++..++ +. +..| +.|+.+|+.++.+
T Consensus 292 ~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeN 369 (603)
T KOG0458|consen 292 EFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGEN 369 (603)
T ss_pred hhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCc
Confidence 2332 1 222333334322 234788999999986 222233 22 3333 4799999999444
Q ss_pred H
Q psy2970 203 C 203 (329)
Q Consensus 203 ~ 203 (329)
+
T Consensus 370 L 370 (603)
T KOG0458|consen 370 L 370 (603)
T ss_pred c
Confidence 3
No 335
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.87 E-value=3e-05 Score=68.91 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=57.9
Q ss_pred ccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh
Q psy2970 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE 157 (329)
Q Consensus 78 ~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~ 157 (329)
++.++..+++++|+++ +|+|++++.. . +..++..
T Consensus 24 ~~~~l~~~~~~ad~il-----------------------------------------~VvD~~~~~~--~---~~~~l~~ 57 (190)
T cd01855 24 ILNLLSSISPKKALVV-----------------------------------------HVVDIFDFPG--S---LIPRLRL 57 (190)
T ss_pred HHHHHHhcccCCcEEE-----------------------------------------EEEECccCCC--c---cchhHHH
Confidence 5677788889999999 9999987642 1 1111111
Q ss_pred CCcCCCCcEEEEEEcCCCCChh----hHHHHH-----HHhCC---cEEEEeccchHHHHHHhhhhc
Q psy2970 158 KPQLIGIPILVLGNKRDLPNAL----DEKELI-----DRIMI---DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 158 ~~~~~~iPIiLVgNK~Dl~~~~----e~~~l~-----~~~~~---~~~etSAk~~~~~~~~l~~i~ 211 (329)
. ..+.|+++|+||+|+.... ..+.+. +..+. +++++||+++.+.+++++.+.
T Consensus 58 ~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~ 121 (190)
T cd01855 58 F--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIK 121 (190)
T ss_pred h--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHH
Confidence 1 2468999999999986432 233333 23343 589999999777777776664
No 336
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.86 E-value=4.2e-05 Score=74.64 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=40.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEeeCceEEEEEEecCCCc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRKITKGNVTIKVWDIGGQP 76 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~i~~~~~~l~I~DtpG~e 76 (329)
++..++.++|.||||||||||+|.+.... ....|.+.-....+.... .+.++||||.-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~-~i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD-GIYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC-CeEEecCCCcC
Confidence 45688999999999999999999987652 333444333333332111 17899999954
No 337
>KOG1486|consensus
Probab=97.86 E-value=0.00022 Score=67.91 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=41.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCC-CceeeeEEEeeCceEEEEEEecCCCcc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS-QDMI-PTVGFNMRKITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~-pTig~~~~~i~~~~~~l~I~DtpG~e~ 77 (329)
.-+|+++|.|.||||||+..++.-... ..|. .|....-..+.+++-.+++.|+||...
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIie 121 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIE 121 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCccccc
Confidence 468999999999999999999875432 2233 233333334677888999999999654
No 338
>KOG0410|consensus
Probab=97.82 E-value=1.9e-05 Score=77.10 Aligned_cols=144 Identities=14% Similarity=0.151 Sum_probs=86.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEee-CceEEEEEEecCCCcccc--chH------HHHhhc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKIT-KGNVTIKVWDIGGQPRFR--SMW------ERYCRG 88 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i~-~~~~~l~I~DtpG~e~~~--~~~------~~~~~~ 88 (329)
.--|.++|..|+|||||++++++.... .....|.....+... ..+-.+-+.||-|...-- .+. -....+
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVae 257 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAE 257 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhh
Confidence 357999999999999999999965543 223344444443322 122345678999953211 111 123456
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc---
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP--- 165 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP--- 165 (329)
+|.++ -|.|++.|+- +....-....++....+..|
T Consensus 258 adlll-----------------------------------------HvvDiShP~a-e~q~e~Vl~vL~~igv~~~pkl~ 295 (410)
T KOG0410|consen 258 ADLLL-----------------------------------------HVVDISHPNA-EEQRETVLHVLNQIGVPSEPKLQ 295 (410)
T ss_pred cceEE-----------------------------------------EEeecCCccH-HHHHHHHHHHHHhcCCCcHHHHh
Confidence 77777 9999999864 33333333333332333333
Q ss_pred -EEEEEEcCCCCChh-hHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 166 -ILVLGNKRDLPNAL-DEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 166 -IiLVgNK~Dl~~~~-e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++=|-||+|..... +.+ +.+ -+.+||+++...+++.+.+.
T Consensus 296 ~mieVdnkiD~e~~~~e~E----~n~--~v~isaltgdgl~el~~a~~ 337 (410)
T KOG0410|consen 296 NMIEVDNKIDYEEDEVEEE----KNL--DVGISALTGDGLEELLKAEE 337 (410)
T ss_pred HHHhhccccccccccCccc----cCC--ccccccccCccHHHHHHHHH
Confidence 34477888876642 211 111 56789999888888887664
No 339
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.81 E-value=8.3e-05 Score=71.22 Aligned_cols=77 Identities=12% Similarity=-0.039 Sum_probs=57.7
Q ss_pred eeEEEEECCCcc-cHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh---HHHHHHHhCCcEEEEeccchHHHHHHh
Q psy2970 132 LIKYMVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD---EKELIDRIMIDFWITLTLLIRWCESFL 207 (329)
Q Consensus 132 ~~~lV~Dvt~~~-S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e---~~~l~~~~~~~~~etSAk~~~~~~~~l 207 (329)
++++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+..+ ......+.+.+++.+||++....+++.
T Consensus 81 ~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~ 156 (287)
T cd01854 81 QLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELR 156 (287)
T ss_pred EEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHH
Confidence 333999999987 77877777765533 4689999999999976532 223345578899999999988888877
Q ss_pred hhhcC
Q psy2970 208 HHFGS 212 (329)
Q Consensus 208 ~~i~~ 212 (329)
..+..
T Consensus 157 ~~L~~ 161 (287)
T cd01854 157 EYLKG 161 (287)
T ss_pred hhhcc
Confidence 76653
No 340
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.80 E-value=0.00016 Score=66.19 Aligned_cols=46 Identities=15% Similarity=0.031 Sum_probs=33.9
Q ss_pred EEEEEEcCCCCChhh-----HHHHHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 166 ILVLGNKRDLPNALD-----EKELIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 166 IiLVgNK~Dl~~~~e-----~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
=++|.||.|+....+ ..+=+++.+ .+++++|.++++.++++++.+.
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~ 197 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIE 197 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHH
Confidence 378999999987622 233334443 7899999999999999876554
No 341
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.79 E-value=4.3e-05 Score=56.78 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=37.3
Q ss_pred chhhhhhhcceeEEEEECCCc--ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 122 GPMWLSLLFQLIKYMVDAADT--DKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 122 ~~~~~~~~~~~~~lV~Dvt~~--~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+.-|++|+.++++|++|.+.. -+.++...+++++... +.+.|+++|.||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 345899999999999999875 5678888888888665 56899999999998
No 342
>PRK12288 GTPase RsgA; Reviewed
Probab=97.75 E-value=9.3e-05 Score=73.03 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=36.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCC-CCC---------CCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 23 LTLVGLQCSGKTTFVNVIASGQFS-QDM---------IPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~~~~-~~~---------~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
++++|.+|||||||+|+|.+.... +.. -.|....+..+..+. .++||||...+
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~ 270 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREF 270 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcc
Confidence 789999999999999999875421 111 134445555554443 48999996654
No 343
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.74 E-value=0.00042 Score=64.09 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=42.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC--CCC---CCCCCceeeeEEEee---CceEEEEEEecCCCccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG--QFS---QDMIPTVGFNMRKIT---KGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~--~~~---~~~~pTig~~~~~i~---~~~~~l~I~DtpG~e~~ 78 (329)
.-|.++|++++|||+|+|++++. .|. .....|.|+-..... .++..+.+.||+|....
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~ 73 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGR 73 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcc
Confidence 45889999999999999999998 664 222345555554432 24678999999997644
No 344
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.70 E-value=0.0001 Score=72.87 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=37.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC------CCCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQF------SQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~------~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
..++.++|.+|||||||+|++.+... .....|.++.....+... -.+.++||||....
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-DGHSLYDTPGIINS 217 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-CCCEEEECCCCCCh
Confidence 46999999999999999999987432 222223333333333321 12469999997643
No 345
>KOG1547|consensus
Probab=97.68 E-value=0.0005 Score=65.13 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCC--CCceEEEEEcCCCCCHHHHHHHHHcCCCC---------CCCCCceeeeEE--EeeCc--eEEEEE
Q psy2970 5 LNRILDWFKSLFW--KEEMELTLVGLQCSGKTTFVNVIASGQFS---------QDMIPTVGFNMR--KITKG--NVTIKV 69 (329)
Q Consensus 5 ~~~~~~~~~~~~~--~k~lkIlllG~~gvGKSSLin~l~~~~~~---------~~~~pTig~~~~--~i~~~--~~~l~I 69 (329)
+..+++.++...- .-+++|+++|.+|.||||++|.++..... ..+..|++.... .+..+ ..++.+
T Consensus 29 idtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltv 108 (336)
T KOG1547|consen 29 IDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTV 108 (336)
T ss_pred HHHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEE
Confidence 3445555554332 23689999999999999999999764432 123344444332 23333 457889
Q ss_pred EecCCC
Q psy2970 70 WDIGGQ 75 (329)
Q Consensus 70 ~DtpG~ 75 (329)
.||||.
T Consensus 109 iDTPGf 114 (336)
T KOG1547|consen 109 IDTPGF 114 (336)
T ss_pred ecCCCc
Confidence 999995
No 346
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.68 E-value=4.3e-05 Score=67.84 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=33.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-CC---------CCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQF-SQ---------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~-~~---------~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
=-++++|.+|||||||+|.+.+..- .+ ..-+|+......++.+ ..+.||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 4688999999999999999988632 11 1112223333344333 358999995543
No 347
>PRK13796 GTPase YqeH; Provisional
Probab=97.67 E-value=0.00012 Score=72.59 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=35.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC------CCCCCCceeeeEEE--eeCceEEEEEEecCCCcc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQF------SQDMIPTVGFNMRK--ITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~------~~~~~pTig~~~~~--i~~~~~~l~I~DtpG~e~ 77 (329)
.-++.++|.+|||||||+|++.+... .....|.+...... ++.+ ..++||||...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCccc
Confidence 45899999999999999999985421 12222333333333 2222 36999999753
No 348
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.67 E-value=4.1e-05 Score=72.79 Aligned_cols=89 Identities=11% Similarity=0.095 Sum_probs=55.3
Q ss_pred chhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh----HHHHHHH-------hCC
Q psy2970 122 GPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD----EKELIDR-------IMI 190 (329)
Q Consensus 122 ~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e----~~~l~~~-------~~~ 190 (329)
+--++....|..++|.-..--+..+.++.-+.++- =++|.||.|.+.++. .+..... +..
T Consensus 135 sE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia---------Di~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~p 205 (266)
T PF03308_consen 135 SEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA---------DIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRP 205 (266)
T ss_dssp HHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--
T ss_pred cHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc---------cEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCC
Confidence 33366777777779988766556666666555652 278899999766532 2222211 125
Q ss_pred cEEEEeccchHHHHHHhhhhcCCCchhhh
Q psy2970 191 DFWITLTLLIRWCESFLHHFGSHPNWAVK 219 (329)
Q Consensus 191 ~~~etSAk~~~~~~~~l~~i~~~~~~~~~ 219 (329)
+.+.|||......+++.+.+..+..+..+
T Consensus 206 pV~~tsA~~~~Gi~eL~~~i~~~~~~l~~ 234 (266)
T PF03308_consen 206 PVLKTSALEGEGIDELWEAIDEHRDYLKE 234 (266)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 79999999988888888888765554444
No 349
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.63 E-value=0.00024 Score=70.77 Aligned_cols=73 Identities=21% Similarity=0.133 Sum_probs=49.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-C-CCCCC-ceeeeEEEe--eC---------------ceEEEEEEecCCCccc--
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQF-S-QDMIP-TVGFNMRKI--TK---------------GNVTIKVWDIGGQPRF-- 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~-~-~~~~p-Tig~~~~~i--~~---------------~~~~l~I~DtpG~e~~-- 78 (329)
+|+.++|.||||||||+|.+++... . ..|.. |+..+...+ .+ ....+.+.|+||...-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998776 3 22322 233333221 11 1246889999996532
Q ss_pred -----cchHHHHhhccceeE
Q psy2970 79 -----RSMWERYCRGVNAIV 93 (329)
Q Consensus 79 -----~~~~~~~~~~ad~iI 93 (329)
.+..-..++.+|+++
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~ 102 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQ 102 (368)
T ss_pred cccCcchHHHHHHHhCCEEE
Confidence 223445678899999
No 350
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.0002 Score=70.11 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=87.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC---CCCCCCC--CceeeeEE-----E---------------e-----e-CceEE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG---QFSQDMI--PTVGFNMR-----K---------------I-----T-KGNVT 66 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~---~~~~~~~--pTig~~~~-----~---------------i-----~-~~~~~ 66 (329)
..+++|-++|.-.-|||||++++.+- .+++... -|+...|. + - + .---.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 45899999999999999999999762 2211111 11111110 0 0 0 11125
Q ss_pred EEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHH
Q psy2970 67 IKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLE 146 (329)
Q Consensus 67 l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~ 146 (329)
+.+.|.||+|-.-..--+-..-.|+.+ +|+++..+-.-.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAl-----------------------------------------LvIaANEpcPQP 126 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGAL-----------------------------------------LVIAANEPCPQP 126 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceE-----------------------------------------EEEecCCCCCCC
Confidence 788999997743221111111234444 999987642222
Q ss_pred HHHHHHH--HHHhCCcCCCCcEEEEEEcCCCCChhhHHHHH---HHh-------CCcEEEEeccchHHHHHHhhhhcCCC
Q psy2970 147 ASRNELH--ALIEKPQLIGIPILVLGNKRDLPNALDEKELI---DRI-------MIDFWITLTLLIRWCESFLHHFGSHP 214 (329)
Q Consensus 147 ~~~~~l~--~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~---~~~-------~~~~~etSAk~~~~~~~~l~~i~~~~ 214 (329)
..++-+. +++.. .-+++|-||+|+...+++.+-- ++| +.|.+.+||...-+.+.+++.+...+
T Consensus 127 QT~EHl~AleIigi-----k~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 127 QTREHLMALEIIGI-----KNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred chHHHHHHHhhhcc-----ceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 2222222 23221 2488999999999875433322 222 36899999999888888888776543
No 351
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.59 E-value=0.00026 Score=60.14 Aligned_cols=63 Identities=19% Similarity=0.048 Sum_probs=42.5
Q ss_pred EEEECCCcccHH--HHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHH---HHHHHhCCcEEEEeccchHH
Q psy2970 135 YMVDAADTDKLE--ASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK---ELIDRIMIDFWITLTLLIRW 202 (329)
Q Consensus 135 lV~Dvt~~~S~~--~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~---~l~~~~~~~~~etSAk~~~~ 202 (329)
+|+|+.++.+.. .+..++.+. ..+.|+++|+||+|+.++.+.. +..++.+.+++.+||++...
T Consensus 17 ~ViD~~~p~~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 17 QIVDARNPLLFRPPDLERYVKEV-----DPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA 84 (141)
T ss_pred EEEEccCCcccCCHHHHHHHHhc-----cCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 999998876533 333333322 1468999999999997654433 33445567899999998543
No 352
>KOG3887|consensus
Probab=97.58 E-value=0.00029 Score=66.73 Aligned_cols=148 Identities=25% Similarity=0.341 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCC---CCceeeeEEEeeCceEEEEEEecCCCccccc---hHHHHhhccceeEe
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDM---IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS---MWERYCRGVNAIVW 94 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~---~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~---~~~~~~~~ad~iI~ 94 (329)
-.|++.|...+||||+-+-.+....+... .+|-......+...-+.+++||.|||-++-. -....++++.+.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi- 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI- 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE-
Confidence 35999999999999988876654432110 0111111112334556799999999987643 2366788889999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC--cCCCCcEEEEEEc
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP--QLIGIPILVLGNK 172 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~--~~~~iPIiLVgNK 172 (329)
+|+|..+. +.+...-+....... -.+++.+-|+..|
T Consensus 107 ----------------------------------------fvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHK 144 (347)
T KOG3887|consen 107 ----------------------------------------FVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHK 144 (347)
T ss_pred ----------------------------------------EEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEe
Confidence 99998752 223222333333322 2467888999999
Q ss_pred CCCCCh------------hhHHHHHHHh----CCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA------------LDEKELIDRI----MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~------------~e~~~l~~~~----~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.|--.+ +..+++++.. .+.|..||-..-.+.|+|-.-++
T Consensus 145 vDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyDHSIfEAFSkvVQ 199 (347)
T KOG3887|consen 145 VDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYDHSIFEAFSKVVQ 199 (347)
T ss_pred ccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecchHHHHHHHHHHH
Confidence 996443 1123333322 24688899998888888776554
No 353
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.56 E-value=0.00032 Score=60.49 Aligned_cols=74 Identities=12% Similarity=-0.001 Sum_probs=45.8
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHHHhC----CcEEEEeccchHHHHHHhhhh
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIM----IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~----~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+|+.++..- ....+.+.+... ..+.|+++|.||+|+.++.+...+.+.+. ...+.+||+.....+.+++.+
T Consensus 14 ~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~~l 90 (157)
T cd01858 14 QVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGKGSLIQLL 90 (157)
T ss_pred EEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccHHHHHHHH
Confidence 99999886321 112222222221 34589999999999977655444444442 224678999877777766655
Q ss_pred c
Q psy2970 211 G 211 (329)
Q Consensus 211 ~ 211 (329)
.
T Consensus 91 ~ 91 (157)
T cd01858 91 R 91 (157)
T ss_pred H
Confidence 4
No 354
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.55 E-value=0.00015 Score=68.01 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC------CC----CCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQF------SQ----DMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~------~~----~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
-.++++|.+|||||||+|++.+..- .. ..-.|.......+. +. .++||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~-~~---~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH-GG---LIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC-Cc---EEEeCCCcccc
Confidence 3688999999999999999987432 11 11134444444442 22 69999996543
No 355
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.52 E-value=0.00015 Score=71.74 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=60.8
Q ss_pred CccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHH
Q psy2970 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHA 154 (329)
Q Consensus 75 ~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~ 154 (329)
+++|..+...+.+.++.++ +|+|+.+... .|..+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il-----------------------------------------~VvD~~d~~~-----s~~~~ 83 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIV-----------------------------------------YVVDIFDFEG-----SLIPE 83 (360)
T ss_pred HHHHHHHHhhcccCCcEEE-----------------------------------------EEEECcCCCC-----CccHH
Confidence 5677777777778888888 9999987542 12222
Q ss_pred HHhCCcCCCCcEEEEEEcCCCCCh----hhHH----HHHHHhCC---cEEEEeccchHHHHHHhhhhc
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLPNA----LDEK----ELIDRIMI---DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~~~----~e~~----~l~~~~~~---~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. ..+.|+++|+||+|+... .+.. +++++.++ .++++||+++.+.++++..+.
T Consensus 84 l~~~--~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~ 149 (360)
T TIGR03597 84 LKRF--VGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIK 149 (360)
T ss_pred HHHH--hCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHH
Confidence 2222 125799999999998643 2233 34566776 489999999777777776653
No 356
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.0007 Score=65.76 Aligned_cols=136 Identities=20% Similarity=0.315 Sum_probs=83.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc---C----C---C------CCCCCCceeeeEE--EeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS---G----Q---F------SQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~---~----~---~------~~~~~pTig~~~~--~i~~~~~~l~I~DtpG~e~~ 78 (329)
.+..++|..+|--+-|||||..+++. . . + +......+.++.. .+...+-.+...|.||+.+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 46679999999999999999999864 1 1 1 1111122222222 23445566778999999887
Q ss_pred c-chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh
Q psy2970 79 R-SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE 157 (329)
Q Consensus 79 ~-~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~ 157 (329)
- ++.- -....|+.| +|+.++|-.-- ..++-+ ++.
T Consensus 89 vKNMIt-gAaqmDgAI-----------------------------------------LVVsA~dGpmP-qTrEHi--Lla 123 (394)
T COG0050 89 VKNMIT-GAAQMDGAI-----------------------------------------LVVAATDGPMP-QTREHI--LLA 123 (394)
T ss_pred HHHHhh-hHHhcCccE-----------------------------------------EEEEcCCCCCC-cchhhh--hhh
Confidence 3 3332 334578888 89988873211 111111 111
Q ss_pred CCcCCCCc-EEEEEEcCCCCCh--------hhHHHHHHHhCC-----cEEEEeccc
Q psy2970 158 KPQLIGIP-ILVLGNKRDLPNA--------LDEKELIDRIMI-----DFWITLTLL 199 (329)
Q Consensus 158 ~~~~~~iP-IiLVgNK~Dl~~~--------~e~~~l~~~~~~-----~~~etSAk~ 199 (329)
+ .-++| ++++.||+|+.+. .+..++..+++. |.+.-||..
T Consensus 124 r--qvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 124 R--QVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred h--hcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhh
Confidence 1 24565 6778999999874 245566777764 466666655
No 357
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.51 E-value=0.00033 Score=60.40 Aligned_cols=76 Identities=18% Similarity=0.083 Sum_probs=50.8
Q ss_pred ceeEEEEECCCcccHHHHHHHHH-HHHhCCcCCCCcEEEEEEcCCCCChhhHHH----HHHHhCCcEEEEeccchHHHHH
Q psy2970 131 QLIKYMVDAADTDKLEASRNELH-ALIEKPQLIGIPILVLGNKRDLPNALDEKE----LIDRIMIDFWITLTLLIRWCES 205 (329)
Q Consensus 131 ~~~~lV~Dvt~~~S~~~~~~~l~-~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~----l~~~~~~~~~etSAk~~~~~~~ 205 (329)
|++++|+|+.++.+.+.. ++. .... ..++|+++|+||+|+.+..+..+ +.+..+.+.+.+||+++...++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhh
Confidence 457799999887654322 222 2222 25689999999999976644333 3333356689999999777777
Q ss_pred Hhhhhc
Q psy2970 206 FLHHFG 211 (329)
Q Consensus 206 ~l~~i~ 211 (329)
+.+.+.
T Consensus 76 L~~~i~ 81 (155)
T cd01849 76 KESAFT 81 (155)
T ss_pred HHHHHH
Confidence 776653
No 358
>KOG1491|consensus
Probab=97.49 E-value=0.00036 Score=68.69 Aligned_cols=76 Identities=25% Similarity=0.363 Sum_probs=51.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCC--CceeeeEEEe-----------------eCceEEEEEEecCCCccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMI--PTVGFNMRKI-----------------TKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~--pTig~~~~~i-----------------~~~~~~l~I~DtpG~e~~ 78 (329)
...+++-+||.||||||||+|.+++....+..- .|++.+..++ ......++++|++|.-+-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 356899999999999999999999876543222 3555443321 122356899999996543
Q ss_pred -------cchHHHHhhccceeE
Q psy2970 79 -------RSMWERYCRGVNAIV 93 (329)
Q Consensus 79 -------~~~~~~~~~~ad~iI 93 (329)
.+..-+.++++|+++
T Consensus 98 As~G~GLGN~FLs~iR~vDaif 119 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIF 119 (391)
T ss_pred cccCcCchHHHHHhhhhcccee
Confidence 223344577899988
No 359
>KOG2486|consensus
Probab=97.49 E-value=0.00025 Score=68.13 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=68.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCC-----CCCCceeeeEEEeeCceEEEEEEecCC----------CccccchH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQ-----DMIPTVGFNMRKITKGNVTIKVWDIGG----------QPRFRSMW 82 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~-----~~~pTig~~~~~i~~~~~~l~I~DtpG----------~e~~~~~~ 82 (329)
.++..++++|.+|||||+|+|.++..+... ....|-..+...+ +-.+.+.|.|| .+++..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhHhH
Confidence 456899999999999999999998755421 2222322333222 33567889999 23444555
Q ss_pred HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCC
Q psy2970 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLI 162 (329)
Q Consensus 83 ~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~ 162 (329)
..|+.+-+-.+ .+++.+|++-+ +........+.+. ..
T Consensus 211 ~~Y~leR~nLv--------------------------------------~~FLLvd~sv~--i~~~D~~~i~~~g---e~ 247 (320)
T KOG2486|consen 211 KSYLLERENLV--------------------------------------RVFLLVDASVP--IQPTDNPEIAWLG---EN 247 (320)
T ss_pred HHHHHhhhhhh--------------------------------------eeeeeeeccCC--CCCCChHHHHHHh---hc
Confidence 66665544433 11255665532 1111122222222 25
Q ss_pred CCcEEEEEEcCCCCCh
Q psy2970 163 GIPILVLGNKRDLPNA 178 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~ 178 (329)
++|..+|.||||....
T Consensus 248 ~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 248 NVPMTSVFTKCDKQKK 263 (320)
T ss_pred CCCeEEeeehhhhhhh
Confidence 7999999999998654
No 360
>PRK12289 GTPase RsgA; Reviewed
Probab=97.47 E-value=0.0002 Score=70.90 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=35.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCCC---------CceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS-QDMI---------PTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~-~~~~---------pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
-++|+|.+|||||||+|+|.++.-. .... .|.......+..+. .+.||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 3899999999999999999865321 1111 23334444443333 58999996544
No 361
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00072 Score=65.63 Aligned_cols=88 Identities=13% Similarity=0.061 Sum_probs=58.3
Q ss_pred hhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh-HHHHHHH------------hCCc
Q psy2970 125 WLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD-EKELIDR------------IMID 191 (329)
Q Consensus 125 ~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e-~~~l~~~------------~~~~ 191 (329)
++....|+.+++.=..--+..+.++.-+.++- =++|.||.|....+. ..++... +.-+
T Consensus 160 ~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia---------Di~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~pp 230 (323)
T COG1703 160 DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA---------DIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPP 230 (323)
T ss_pred HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh---------heeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCc
Confidence 56666677667776554455566665555552 278899999876522 1111111 2247
Q ss_pred EEEEeccchHHHHHHhhhhcCCCchhhhcC
Q psy2970 192 FWITLTLLIRWCESFLHHFGSHPNWAVKWH 221 (329)
Q Consensus 192 ~~etSAk~~~~~~~~l~~i~~~~~~~~~~~ 221 (329)
.+.|||..++...++.+.+..+.++..+..
T Consensus 231 v~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg 260 (323)
T COG1703 231 VVTTSALEGEGIDELWDAIEDHRKFLTESG 260 (323)
T ss_pred eeEeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999999987776665543
No 362
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.45 E-value=0.00054 Score=59.84 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
++++|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999999865
No 363
>PRK12288 GTPase RsgA; Reviewed
Probab=97.43 E-value=0.001 Score=65.70 Aligned_cols=79 Identities=16% Similarity=0.063 Sum_probs=58.7
Q ss_pred cceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh---HH---HHHHHhCCcEEEEeccchHHH
Q psy2970 130 FQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD---EK---ELIDRIMIDFWITLTLLIRWC 203 (329)
Q Consensus 130 ~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e---~~---~l~~~~~~~~~etSAk~~~~~ 203 (329)
.+.+++|++++...++..+..|+.... ..++|++||+||+|+.+..+ .+ +..+.++++++++||++....
T Consensus 121 vD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~Gi 196 (347)
T PRK12288 121 IDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGL 196 (347)
T ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCH
Confidence 455569999988788888888876442 35689999999999976432 22 233456789999999997778
Q ss_pred HHHhhhhcC
Q psy2970 204 ESFLHHFGS 212 (329)
Q Consensus 204 ~~~l~~i~~ 212 (329)
+++.+.+..
T Consensus 197 deL~~~L~~ 205 (347)
T PRK12288 197 EELEAALTG 205 (347)
T ss_pred HHHHHHHhh
Confidence 887777654
No 364
>KOG0448|consensus
Probab=97.34 E-value=0.0033 Score=66.58 Aligned_cols=45 Identities=18% Similarity=0.337 Sum_probs=33.0
Q ss_pred HHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcee
Q psy2970 10 DWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVG 54 (329)
Q Consensus 10 ~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig 54 (329)
+-+.+.+.+..+||++.|+.+.||||++|++...+.. .+..+|+.
T Consensus 99 ~~i~~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~Tn 144 (749)
T KOG0448|consen 99 DAIDEVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTN 144 (749)
T ss_pred HHHHHHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccce
Confidence 3344455677899999999999999999999876653 33334433
No 365
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.30 E-value=0.0011 Score=64.72 Aligned_cols=57 Identities=16% Similarity=-0.011 Sum_probs=34.1
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEecc
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLTL 198 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSAk 198 (329)
+|+|++... +.+.. .....+. . -+--+|.||.|.... -.+-+++.+.++|+..++.-
T Consensus 238 LVl~a~~g~--~~~~~-a~~f~~~---~-~~~giIlTKlD~t~~~G~~l~~~~~~~~Pi~~v~~G 295 (318)
T PRK10416 238 LVLDATTGQ--NALSQ-AKAFHEA---V-GLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVG 295 (318)
T ss_pred EEEECCCCh--HHHHH-HHHHHhh---C-CCCEEEEECCCCCCCccHHHHHHHHHCCCEEEEeCC
Confidence 999988432 22222 2222111 1 234688999996544 34556778889998888743
No 366
>KOG1144|consensus
Probab=97.29 E-value=0.00027 Score=75.22 Aligned_cols=229 Identities=17% Similarity=0.170 Sum_probs=130.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCceeeeEEEe-------------eCceE---EEEEEecCCCccccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQD----MIPTVGFNMRKI-------------TKGNV---TIKVWDIGGQPRFRS 80 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~----~~pTig~~~~~i-------------~~~~~---~l~I~DtpG~e~~~~ 80 (329)
.=++++|.-.+|||-|+..+-+.++... ..+.+|-.|... ....+ -+.++||||++.|.+
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn 555 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN 555 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence 3478999999999999999987554321 223344444321 11112 267899999999999
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHHHh
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHALIE 157 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i~~ 157 (329)
++...-.-||..| +|+|+.. +.+.+.+. +++
T Consensus 556 lRsrgsslC~~aI-----------------------------------------lvvdImhGlepqtiESi~-----lLR 589 (1064)
T KOG1144|consen 556 LRSRGSSLCDLAI-----------------------------------------LVVDIMHGLEPQTIESIN-----LLR 589 (1064)
T ss_pred hhhccccccceEE-----------------------------------------EEeehhccCCcchhHHHH-----HHH
Confidence 9988888888888 9999874 34433332 222
Q ss_pred CCcCCCCcEEEEEEcCCCCC-------h-----------h-------hHHHHHHHh---C---------------CcEEE
Q psy2970 158 KPQLIGIPILVLGNKRDLPN-------A-----------L-------DEKELIDRI---M---------------IDFWI 194 (329)
Q Consensus 158 ~~~~~~iPIiLVgNK~Dl~~-------~-----------~-------e~~~l~~~~---~---------------~~~~e 194 (329)
..++|++|.+||+|.-- . . .+..+..+| | +.++.
T Consensus 590 ---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVP 666 (1064)
T KOG1144|consen 590 ---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVP 666 (1064)
T ss_pred ---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeee
Confidence 25799999999999621 1 0 111111111 1 23566
Q ss_pred EeccchHHHHHHhhhhcCCCchhhhcCCcchhhhhhhhhccccCCCCCccccccceeehhhh-eeeeeeeeceeeeeeee
Q psy2970 195 TLTLLIRWCESFLHHFGSHPNWAVKWHTLPKLLFLSLVDSYVSSGASDYTEEAGCTISILML-SWYSVTVRQHWSYIIMY 273 (329)
Q Consensus 195 tSAk~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~g~~i~~~~~-~~~~~~~~~~~~~~~~~ 273 (329)
|||.++.+.-.++-.+ +.|.+ .+. +....|-.+..|||.-... .-+-.|.+-.-+--.+-
T Consensus 667 TSA~sGeGipdLl~ll-------v~ltQ-----------k~m-~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~ 727 (1064)
T KOG1144|consen 667 TSAISGEGIPDLLLLL-------VQLTQ-----------KTM-VEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELH 727 (1064)
T ss_pred cccccCCCcHHHHHHH-------HHHHH-----------HHH-HHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceec
Confidence 7777765555544322 11111 011 1122355667777665432 22333333222211111
Q ss_pred hhcCceeeeeeccceeecccccccceecCccCcchhhhccccceeeee
Q psy2970 274 IVHKPLAYRLECNMSRVSTTTHSSCTYFSPFQNHKVLCNQMHHLTLKT 321 (329)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (329)
+- ---.-|||--.-+||--.--.--|...-.|--..+||-.+|.
T Consensus 728 eG----D~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvka 771 (1064)
T KOG1144|consen 728 EG----DQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKA 771 (1064)
T ss_pred cC----CEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhh
Confidence 10 112458888777776655555567777777778888866553
No 367
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.29 E-value=0.0013 Score=58.43 Aligned_cols=47 Identities=28% Similarity=0.272 Sum_probs=29.7
Q ss_pred hhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChh
Q psy2970 127 SLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL 179 (329)
Q Consensus 127 ~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~ 179 (329)
....+.++.|+|..+..........+.+-++.. + +|+.||+|+.+.+
T Consensus 111 ~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A---D---vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 111 DFRLDSIITVVDATNFDELENIPELLREQIAFA---D---VIVLNKIDLVSDE 157 (178)
T ss_dssp HESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----S---EEEEE-GGGHHHH
T ss_pred cccccceeEEeccccccccccchhhhhhcchhc---C---EEEEeccccCChh
Confidence 344677889999977544444445555444432 2 6889999998765
No 368
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.29 E-value=0.00078 Score=76.02 Aligned_cols=109 Identities=25% Similarity=0.286 Sum_probs=64.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCC--C--CC--ceeeeEEE---eeCceEEEEEEecCCCc--------cccchHHHH
Q psy2970 23 LTLVGLQCSGKTTFVNVIASGQFSQD--M--IP--TVGFNMRK---ITKGNVTIKVWDIGGQP--------RFRSMWERY 85 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~~~~~~--~--~p--Tig~~~~~---i~~~~~~l~I~DtpG~e--------~~~~~~~~~ 85 (329)
.+|+|++|+||||++++. +-+++-. . .. +++..-.. +..+ -.++||+|.. .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHHH
Confidence 689999999999999987 4444311 0 01 11111000 1222 3489999932 122345444
Q ss_pred h---------hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc-----cH----HH
Q psy2970 86 C---------RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD-----KL----EA 147 (329)
Q Consensus 86 ~---------~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~-----S~----~~ 147 (329)
+ +..||+| +++|+.+.- .. ..
T Consensus 190 L~~L~k~R~r~plnGvi-----------------------------------------l~vs~~~Ll~~~~~~~~~~a~~ 228 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVV-----------------------------------------VTVSLADLLTADPAERKAHARA 228 (1169)
T ss_pred HHHHHHhCCCCCCCeEE-----------------------------------------EEEEHHHHhCCCHHHHHHHHHH
Confidence 3 2478888 888886531 11 23
Q ss_pred HHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 148 SRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 148 ~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
++..+.++.+.. ....||.||.+|+|+..
T Consensus 229 lR~rl~el~~~l-g~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 229 IRQRLQELREQL-GARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHHHh-CCCCCEEEEEecchhhc
Confidence 344455554443 36899999999999874
No 369
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.26 E-value=0.00054 Score=66.44 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=36.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC------CC----CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ------FS----QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~------~~----~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
-.+++|.+|||||||+|++..+. ++ ...-+|+......++.+. .|.||||...+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 67889999999999999997622 21 122244445555554444 38899996544
No 370
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.22 E-value=0.012 Score=51.45 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=37.5
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh--hhHHHHHHHhCCcEEE
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRIMIDFWI 194 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~--~e~~~l~~~~~~~~~e 194 (329)
+++..+ ..+.......++.+.+ .+.|+.+|.||.|.... .+.+++.++++++++-
T Consensus 120 iv~~~~-~~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 120 LVTEPT-PSGLHDLERAVELVRH----FGIPVGVVINKYDLNDEIAEEIEDYCEEEGIPILG 176 (179)
T ss_pred EEecCC-cccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCeEE
Confidence 888876 3455566665554432 35678999999998654 4567778888887653
No 371
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.22 E-value=0.002 Score=64.54 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS 46 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~ 46 (329)
+..+.+...|.-+.|||||+-.+..++..
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~D 143 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLD 143 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCC
Confidence 45688999999999999999998765543
No 372
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.21 E-value=0.00081 Score=64.42 Aligned_cols=55 Identities=22% Similarity=0.222 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-C---------CCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQ-D---------MIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~-~---------~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
-.++++|++|||||||+|.+.+..... . ...|.......+.... .++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCcc
Confidence 579999999999999999998754321 1 0122223333333222 58999998654
No 373
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.0046 Score=61.86 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=36.4
Q ss_pred EEEECCC-cccHHHHHHHHHHHHhCCcCCCC-cEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAAD-TDKLEASRNELHALIEKPQLIGI-PILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~-~~S~~~~~~~l~~i~~~~~~~~i-PIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|++.+. .+.+......+......+...-. +-=++.+|.|-... -.+-.+..+.++|+..++.
T Consensus 251 LVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~~G~~l~~~~~~~lPi~yvt~ 316 (374)
T PRK14722 251 LLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVST 316 (374)
T ss_pred EEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCCccHHHHHHHHHCcCeEEEec
Confidence 8999875 34455555555554322111001 23567899998765 3456677777877655543
No 374
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.12 E-value=0.0059 Score=62.10 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~ 41 (329)
.--|+++|.+||||||++..+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999985
No 375
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.12 E-value=0.002 Score=61.53 Aligned_cols=56 Identities=11% Similarity=-0.060 Sum_probs=33.8
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|+|.+... +.+ .......+.. -+--++.||.|.... -.+-++....+.|...++.
T Consensus 196 LVl~a~~~~--~~~-~~~~~f~~~~----~~~g~IlTKlDe~~~~G~~l~~~~~~~~Pi~~~~~ 252 (272)
T TIGR00064 196 LVLDATTGQ--NAL-EQAKVFNEAV----GLTGIILTKLDGTAKGGIILSIAYELKLPIKFIGV 252 (272)
T ss_pred EEEECCCCH--HHH-HHHHHHHhhC----CCCEEEEEccCCCCCccHHHHHHHHHCcCEEEEeC
Confidence 999987431 222 2223332211 134688999998665 3455667788888877763
No 376
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.11 E-value=0.0016 Score=57.05 Aligned_cols=70 Identities=14% Similarity=0.006 Sum_probs=44.9
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHH---HHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELI---DRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~---~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+|+.++..-... ..+..+ .+.|+++|.||+|+.++.+..++. +..+..++.+||++....+++...+.
T Consensus 25 ~v~D~~~~~~~~~~-~i~~~~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~ 97 (171)
T cd01856 25 EVRDARIPLSSRNP-LLEKIL------GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGKGVKKLLKAAK 97 (171)
T ss_pred EEeeccCccCcCCh-hhHhHh------cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcccHHHHHHHHH
Confidence 99999876432111 111111 346899999999997654333332 23345689999999877777776654
No 377
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.10 E-value=0.0016 Score=56.92 Aligned_cols=54 Identities=19% Similarity=0.030 Sum_probs=31.7
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEE
Q psy2970 134 KYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWI 194 (329)
Q Consensus 134 ~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~e 194 (329)
++|+|..... ...+...+..+. .+ ..-+|.||.|.... -..-+++...++|+..
T Consensus 117 ~lVv~~~~~~---~~~~~~~~~~~~---~~-~~~viltk~D~~~~~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 117 LLVVDAMTGQ---DAVNQAKAFNEA---LG-ITGVILTKLDGDARGGAALSIRAVTGKPIKF 171 (173)
T ss_pred EEEEECCCCh---HHHHHHHHHHhh---CC-CCEEEEECCcCCCCcchhhhhHHHHCcCeEe
Confidence 3999986433 233344444332 12 25677799998765 3344477777777543
No 378
>PRK00098 GTPase RsgA; Reviewed
Probab=97.10 E-value=0.0011 Score=63.92 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCC---------CCceeeeEEEeeCceEEEEEEecCCCcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDM---------IPTVGFNMRKITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~---------~pTig~~~~~i~~~~~~l~I~DtpG~e~ 77 (329)
-.++++|.+|||||||+|.+.+.... ... ..|.......++.. ..+.||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 46899999999999999999875422 111 12222333233322 26899999653
No 379
>PRK13695 putative NTPase; Provisional
Probab=97.08 E-value=0.0063 Score=53.36 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
++|++.|++|+|||||++.+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999754
No 380
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.07 E-value=0.0041 Score=56.59 Aligned_cols=55 Identities=16% Similarity=0.003 Sum_probs=32.5
Q ss_pred EEEECCCcc-cHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~~~-S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|.|.+... .++.... ..+. .+ +--++.+|.|.... -.+-.++.+.+.|.-.++.
T Consensus 119 LVlsa~~~~~~~~~~~~----~~~~---~~-~~~lIlTKlDet~~~G~~l~~~~~~~~Pi~~it~ 175 (196)
T PF00448_consen 119 LVLSATMGQEDLEQALA----FYEA---FG-IDGLILTKLDETARLGALLSLAYESGLPISYITT 175 (196)
T ss_dssp EEEEGGGGGHHHHHHHH----HHHH---SS-TCEEEEESTTSSSTTHHHHHHHHHHTSEEEEEES
T ss_pred EEEecccChHHHHHHHH----Hhhc---cc-CceEEEEeecCCCCcccceeHHHHhCCCeEEEEC
Confidence 899987543 2222222 2121 11 12467999998765 4566777888888666553
No 381
>PRK14974 cell division protein FtsY; Provisional
Probab=97.03 E-value=0.0022 Score=63.27 Aligned_cols=31 Identities=13% Similarity=-0.198 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEe
Q psy2970 166 ILVLGNKRDLPNA-LDEKELIDRIMIDFWITL 196 (329)
Q Consensus 166 IiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etS 196 (329)
--++.||.|.... -.+-.++...+.|+..++
T Consensus 282 ~giIlTKlD~~~~~G~~ls~~~~~~~Pi~~i~ 313 (336)
T PRK14974 282 DGVILTKVDADAKGGAALSIAYVIGKPILFLG 313 (336)
T ss_pred CEEEEeeecCCCCccHHHHHHHHHCcCEEEEe
Confidence 3678999998765 345566677888987776
No 382
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0028 Score=66.15 Aligned_cols=130 Identities=14% Similarity=0.192 Sum_probs=77.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeeccee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLY 99 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~ 99 (329)
.+=++++|+||.||||||+.+....-. .....+.-.+.-+.++.-++.+...|. +.+++.
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~tk-~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~mi----------------- 128 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFTK-QTIDEIRGPITVVSGKTRRITFLECPS--DLHQMI----------------- 128 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHHH-hhhhccCCceEEeecceeEEEEEeChH--HHHHHH-----------------
Confidence 467789999999999999998764321 111111111223457778889998883 333332
Q ss_pred eehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCCh
Q psy2970 100 IVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP-ILVLGNKRDLPNA 178 (329)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~~ 178 (329)
.++++.+++++.+|...- |+--...+..++.. .+.| |+-|++..|+-..
T Consensus 129 -------------------------DvaKIaDLVlLlIdgnfG--fEMETmEFLnil~~---HGmPrvlgV~ThlDlfk~ 178 (1077)
T COG5192 129 -------------------------DVAKIADLVLLLIDGNFG--FEMETMEFLNILIS---HGMPRVLGVVTHLDLFKN 178 (1077)
T ss_pred -------------------------hHHHhhheeEEEeccccC--ceehHHHHHHHHhh---cCCCceEEEEeecccccC
Confidence 234556666699998653 33223334444443 3455 6669999999764
Q ss_pred -hhHHHHHHHh----------CCcEEEEeccc
Q psy2970 179 -LDEKELIDRI----------MIDFWITLTLL 199 (329)
Q Consensus 179 -~e~~~l~~~~----------~~~~~etSAk~ 199 (329)
..+.+..+++ |..+|..|-..
T Consensus 179 ~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 179 PSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred hHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 3333333322 46777777655
No 383
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.00 E-value=0.006 Score=59.60 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
.++.|.-|+|||||+|++...
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 456799999999999999864
No 384
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.99 E-value=0.014 Score=57.38 Aligned_cols=67 Identities=16% Similarity=0.055 Sum_probs=38.5
Q ss_pred cceeEEEEECCCcccH-HHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHH---HHHHHhC--CcEEEEeccchHH
Q psy2970 130 FQLIKYMVDAADTDKL-EASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK---ELIDRIM--IDFWITLTLLIRW 202 (329)
Q Consensus 130 ~~~~~lV~Dvt~~~S~-~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~---~l~~~~~--~~~~etSAk~~~~ 202 (329)
.+.++-|+|+.+-..- ....+.+.+=+.. .+ +||+||.|+.++.+.+ +..++++ .+.+.++......
T Consensus 117 ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD---~ivlNK~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~~~~~~ 189 (323)
T COG0523 117 LDGVVTVVDAAHFLEGLDAIAELAEDQLAF---AD---VIVLNKTDLVDAEELEALEARLRKLNPRARIIETSYGDVDL 189 (323)
T ss_pred eceEEEEEeHHHhhhhHHHHHHHHHHHHHh---Cc---EEEEecccCCCHHHHHHHHHHHHHhCCCCeEEEccccCCCH
Confidence 3456788888764321 2122333322222 22 7899999999975543 3444444 5688888766443
No 385
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.94 E-value=0.0038 Score=59.33 Aligned_cols=69 Identities=14% Similarity=0.042 Sum_probs=44.9
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHH---HhCCcEEEEeccchHHHHHHhhhh
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID---RIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~---~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+|+.++.+-+. ..+.+.+ .+.|+++|.||+|+.+..+.+++.+ +.+.+.+.+||++....+.+.+.+
T Consensus 27 ~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~i 98 (276)
T TIGR03596 27 EVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAA 98 (276)
T ss_pred EEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHH
Confidence 9999987644222 1222332 2579999999999976543343322 345678999999976667665554
No 386
>KOG0467|consensus
Probab=96.85 E-value=0.0017 Score=69.40 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--C------------CCCCCceeeeEEE--e--eCceEEEEEEecCCCccccchH
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQF--S------------QDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRSMW 82 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~--~------------~~~~pTig~~~~~--i--~~~~~~l~I~DtpG~e~~~~~~ 82 (329)
-+++++-.-.-|||||...+...+. . ..-.+|-|+.++. + -.+++.++++|+||+-+|.+..
T Consensus 10 rn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sev 89 (887)
T KOG0467|consen 10 RNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEV 89 (887)
T ss_pred eEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhh
Confidence 4688888888999999999975332 1 1112444555543 3 3478899999999999999888
Q ss_pred HHHhhccceeE
Q psy2970 83 ERYCRGVNAIV 93 (329)
Q Consensus 83 ~~~~~~ad~iI 93 (329)
....+-+|+.+
T Consensus 90 ssas~l~d~al 100 (887)
T KOG0467|consen 90 SSASRLSDGAL 100 (887)
T ss_pred hhhhhhcCCcE
Confidence 88888888888
No 387
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.024 Score=50.87 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+..+||.+.|+|||||||++.++.+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 4579999999999999999999864
No 388
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.82 E-value=0.0093 Score=56.29 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=44.6
Q ss_pred hcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC-CcEEEEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHH
Q psy2970 129 LFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG-IPILVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCES 205 (329)
Q Consensus 129 ~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~-iPIiLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~ 205 (329)
..|+++.|+|.+.. ++.... .+.++.+. .+ .++.+|+||.|-. .....+.+.+.+.++.-+-..+..+.+.
T Consensus 155 ~vD~vivVvDpS~~-sl~tae-ri~~L~~e---lg~k~i~~V~NKv~e~-e~~~~~~~~~~~~~vlg~iP~d~~v~~~ 226 (255)
T COG3640 155 GVDLVIVVVDPSYK-SLRTAE-RIKELAEE---LGIKRIFVVLNKVDEE-EELLRELAEELGLEVLGVIPYDPEVVEA 226 (255)
T ss_pred CCCEEEEEeCCcHH-HHHHHH-HHHHHHHH---hCCceEEEEEeeccch-hHHHHhhhhccCCeEEEEccCCHHHHhc
Confidence 34556699998743 333333 23444443 33 6799999999977 4456667777787776666666555444
No 389
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.81 E-value=0.0073 Score=52.38 Aligned_cols=20 Identities=20% Similarity=0.609 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy2970 23 LTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~ 42 (329)
|.++|.+|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999854
No 390
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.0091 Score=62.35 Aligned_cols=56 Identities=9% Similarity=0.001 Sum_probs=34.0
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|++.+. +...+...++.+.. ..+.-+|.||.|.... -.+-.+....++++..++.
T Consensus 463 LVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~~lG~aLsv~~~~~LPI~yvt~ 519 (559)
T PRK12727 463 LVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTD 519 (559)
T ss_pred EEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCccchhHHHHHHHHhCCCEEEEeC
Confidence 7788764 33444444444322 1356789999998665 3455666777777666544
No 391
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.73 E-value=0.0059 Score=58.39 Aligned_cols=69 Identities=20% Similarity=0.094 Sum_probs=45.1
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHH---HhCCcEEEEeccchHHHHHHhhhh
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID---RIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~---~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+|+.++.+-+. ..+.+.+ .+.|+++|.||+|+.+....+++.+ +.+.+.+.+||++....+.+.+.+
T Consensus 30 ~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l 101 (287)
T PRK09563 30 EVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQGVKKILKAA 101 (287)
T ss_pred EEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHH
Confidence 9999987644222 2233332 2579999999999976543333333 335678999999976666666544
No 392
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.68 E-value=0.049 Score=55.55 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=30.8
Q ss_pred CCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCcEEEEeccc
Q psy2970 161 LIGIPILVLGNKRDLPNA---LDEKELIDRIMIDFWITLTLL 199 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~~~etSAk~ 199 (329)
..+.|+++++|=.+-..+ .-++++.++++++.+.+++..
T Consensus 178 ~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 178 EIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred HhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHH
Confidence 357899999998886554 236678899999999987766
No 393
>KOG0464|consensus
Probab=96.66 E-value=0.0015 Score=66.07 Aligned_cols=125 Identities=19% Similarity=0.143 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc--------CCCCC------------CCCCceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS--------GQFSQ------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~--------~~~~~------------~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
-+|-++..-.+||||...|+.- ++... ...-|+...-..++.++.++.++||||..+|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 3677788888999999999853 11110 011122222224688999999999999999999
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
..+.+++--|+++ .|||.+---.-+.+..|-. ..
T Consensus 118 everclrvldgav-----------------------------------------av~dasagve~qtltvwrq-----ad 151 (753)
T KOG0464|consen 118 EVERCLRVLDGAV-----------------------------------------AVFDASAGVEAQTLTVWRQ-----AD 151 (753)
T ss_pred EHHHHHHHhcCeE-----------------------------------------EEEeccCCcccceeeeehh-----cc
Confidence 9999999999999 9999875322223333322 23
Q ss_pred CCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc
Q psy2970 161 LIGIPILVLGNKRDLPNA---LDEKELIDRIMID 191 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~ 191 (329)
+-++|-+.+.||.|...+ ...+.+.++++..
T Consensus 152 k~~ip~~~finkmdk~~anfe~avdsi~ekl~ak 185 (753)
T KOG0464|consen 152 KFKIPAHCFINKMDKLAANFENAVDSIEEKLGAK 185 (753)
T ss_pred ccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCc
Confidence 568999999999998665 3456677777753
No 394
>KOG0447|consensus
Probab=96.64 E-value=0.015 Score=60.65 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
-+|+++|+..+||||.+..+...
T Consensus 309 PRVVVVGDQSaGKTSVLEmiAqA 331 (980)
T KOG0447|consen 309 PRVVVVGDQSAGKTSVLEMIAQA 331 (980)
T ss_pred ceEEEEcCccccchHHHHHHHHh
Confidence 58999999999999999998653
No 395
>KOG3859|consensus
Probab=96.58 E-value=0.0072 Score=58.53 Aligned_cols=56 Identities=18% Similarity=0.345 Sum_probs=41.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCceeeeEEEe----eCceEEEEEEecCCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQD----MIPTVGFNMRKI----TKGNVTIKVWDIGGQ 75 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~----~~pTig~~~~~i----~~~~~~l~I~DtpG~ 75 (329)
.++|+.+|..|.|||||+..+++-.|... ..|+++...... .+-.+++.|.||.|.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 68999999999999999999999877533 334544443332 234568899999984
No 396
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.57 E-value=0.0095 Score=60.45 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.-.|+++|++||||||++..+.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998865
No 397
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.40 E-value=0.0027 Score=51.68 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.|+|.|.+||||||+.+++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999774
No 398
>PRK13796 GTPase YqeH; Provisional
Probab=96.40 E-value=0.01 Score=58.84 Aligned_cols=72 Identities=22% Similarity=0.240 Sum_probs=47.3
Q ss_pred eeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh----hhHH----HHHHHhCC---cEEEEeccch
Q psy2970 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA----LDEK----ELIDRIMI---DFWITLTLLI 200 (329)
Q Consensus 132 ~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~----~e~~----~l~~~~~~---~~~etSAk~~ 200 (329)
++++|+|+.|... .+...+.+.. .+.|+++|+||+|+... .+.+ .+++++++ +++.+||++.
T Consensus 72 lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g 144 (365)
T PRK13796 72 LVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKG 144 (365)
T ss_pred EEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCC
Confidence 5569999987431 2223333332 25789999999999642 2222 33555666 5899999997
Q ss_pred HHHHHHhhhh
Q psy2970 201 RWCESFLHHF 210 (329)
Q Consensus 201 ~~~~~~l~~i 210 (329)
.+.+++++.+
T Consensus 145 ~gI~eL~~~I 154 (365)
T PRK13796 145 HGIDELLEAI 154 (365)
T ss_pred CCHHHHHHHH
Confidence 7777777665
No 399
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.39 E-value=0.033 Score=54.93 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
.++.|.-|+|||||+|++...
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 567799999999999999864
No 400
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.37 E-value=0.036 Score=55.91 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=72.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcee----eeEE-------------------E-----------eeCceE
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG----FNMR-------------------K-----------ITKGNV 65 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig----~~~~-------------------~-----------i~~~~~ 65 (329)
.-.|+++|+.||||||-+-.|.....-......++ +.|+ - -...++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56799999999999999888764333111112222 1222 0 023456
Q ss_pred EEEEEecCCCccccchH----HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC
Q psy2970 66 TIKVWDIGGQPRFRSMW----ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD 141 (329)
Q Consensus 66 ~l~I~DtpG~e~~~~~~----~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~ 141 (329)
.+.+.||+|...+.... ..++..+.-+- +| +|++++.
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~------------------~~---------------------Lvlsat~ 323 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIE------------------VY---------------------LVLSATT 323 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccce------------------EE---------------------EEEecCc
Confidence 78899999976554332 33333332211 12 8899886
Q ss_pred cccHHHHHHHHHHHHhCCcCCCCcE-EEEEEcCCCCCh-hhHHHHHHHhCCcEEEE
Q psy2970 142 TDKLEASRNELHALIEKPQLIGIPI-LVLGNKRDLPNA-LDEKELIDRIMIDFWIT 195 (329)
Q Consensus 142 ~~S~~~~~~~l~~i~~~~~~~~iPI-iLVgNK~Dl~~~-~e~~~l~~~~~~~~~et 195 (329)
.. +.+...+... ..+|+ =++.+|.|-... -+.-.+..+-+.|.-.+
T Consensus 324 K~--~dlkei~~~f------~~~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV~Yv 371 (407)
T COG1419 324 KY--EDLKEIIKQF------SLFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYV 371 (407)
T ss_pred ch--HHHHHHHHHh------ccCCcceeEEEcccccCchhHHHHHHHHhCCCeEEE
Confidence 43 3444444333 22333 466899997665 34555666666664444
No 401
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.045 Score=55.59 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.-.|+++|++||||||++..|..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999999953
No 402
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.34 E-value=0.019 Score=46.23 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
..-.+++.|++|+|||++++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998754
No 403
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.30 E-value=0.068 Score=45.41 Aligned_cols=107 Identities=10% Similarity=0.080 Sum_probs=61.8
Q ss_pred EEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE-eeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeeh
Q psy2970 24 TLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVS 102 (329)
Q Consensus 24 lllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~-i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~ 102 (329)
+.-|.+|+||||+.-.+...--. .-..+.-.+... ...-.+.+.++|+|+.. .......+..+|.++
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vv--------- 71 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVI--------- 71 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEE---------
Confidence 34578999999998776532110 001111111110 01111678899999743 333456788889888
Q ss_pred hccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 103 KHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
++.+.+ +.++......++.+.+.. ...++.+|.|+.+-..
T Consensus 72 --------------------------------iv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~~ 111 (139)
T cd02038 72 --------------------------------VVTTPE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAESPK 111 (139)
T ss_pred --------------------------------EEcCCC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCHH
Confidence 888875 344555555555554331 3456789999997543
No 404
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.23 E-value=0.015 Score=59.11 Aligned_cols=56 Identities=16% Similarity=-0.022 Sum_probs=33.2
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|+|.+.. +..........+.. + ..=+|.||.|.... -.+..++...++|+..+..
T Consensus 218 LVvda~tg---q~~~~~a~~f~~~v---~-i~giIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 218 LVVDAMTG---QDAVNTAKTFNERL---G-LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred EEEeccch---HHHHHHHHHHHhhC---C-CCEEEEeCccCcccccHHHHHHHHHCcCEEEEeC
Confidence 99998643 33444334333221 1 23567999996443 3466777888888666554
No 405
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.19 E-value=0.028 Score=53.85 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.-+++++|++|+||||++..+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 346999999999999999998854
No 406
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.14 E-value=0.0043 Score=51.77 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy2970 23 LTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~ 42 (329)
|+++|+|||||||+++++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999974
No 407
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.062 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.--++++|+.||||||++..+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999863
No 408
>PRK10867 signal recognition particle protein; Provisional
Probab=96.12 E-value=0.089 Score=53.69 Aligned_cols=56 Identities=20% Similarity=-0.007 Sum_probs=32.2
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|+|.+.. ++..+......+.. + ..-+|.||.|.... -.+..++...++|...++.
T Consensus 219 lVlda~~g---q~av~~a~~F~~~~---~-i~giIlTKlD~~~rgG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 219 LVVDAMTG---QDAVNTAKAFNEAL---G-LTGVILTKLDGDARGGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred EEEecccH---HHHHHHHHHHHhhC---C-CCEEEEeCccCcccccHHHHHHHHHCcCEEEEeC
Confidence 99997642 33434344433221 1 12467799996443 3466677888888665544
No 409
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.11 E-value=0.039 Score=41.79 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=36.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccch-HHHHhhccceeE
Q psy2970 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM-WERYCRGVNAIV 93 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~-~~~~~~~ad~iI 93 (329)
+++.|.+|+||||+...+...--.. |....-++ .+.+.|+++....... .......+|.++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi 63 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR------GKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVI 63 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------CCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEE
Confidence 6788999999999999886431111 11111122 6779999986543221 133455666666
No 410
>PRK08118 topology modulation protein; Reviewed
Probab=96.06 E-value=0.0049 Score=54.41 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+|+|+|++|||||||.+++...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999764
No 411
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.05 E-value=0.072 Score=54.08 Aligned_cols=31 Identities=10% Similarity=-0.136 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 167 LVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 167 iLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
-++.||.|-... -..-++....++|...++.
T Consensus 361 ~vI~TKlDet~~~G~i~~~~~~~~lPv~yit~ 392 (424)
T PRK05703 361 GLIFTKLDETSSLGSILSLLIESGLPISYLTN 392 (424)
T ss_pred EEEEecccccccccHHHHHHHHHCCCEEEEeC
Confidence 588999998665 4466777888888666654
No 412
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.03 E-value=0.03 Score=57.17 Aligned_cols=23 Identities=48% Similarity=0.560 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~ 41 (329)
+...|+++|.+||||||++..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 46789999999999999998885
No 413
>KOG2485|consensus
Probab=96.01 E-value=0.0073 Score=59.00 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=37.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC------CCCCCCceeeeEEE-ee-CceEEEEEEecCCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF------SQDMIPTVGFNMRK-IT-KGNVTIKVWDIGGQ 75 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~------~~~~~pTig~~~~~-i~-~~~~~l~I~DtpG~ 75 (329)
..++.+.++|-||||||||+|++..... .....|.+...+.. +. ...-.+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 4679999999999999999999865322 12233444433332 21 12223779999994
No 414
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.0051 Score=55.23 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++|+|+|+||+||||+.+++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999876
No 415
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.025 Score=57.57 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
..-++++|++||||||++.+|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999964
No 416
>PRK07261 topology modulation protein; Provisional
Probab=95.98 E-value=0.0056 Score=54.15 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+|+|+|.+|+|||||.+++...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999998653
No 417
>KOG2484|consensus
Probab=95.91 E-value=0.0066 Score=60.96 Aligned_cols=59 Identities=19% Similarity=0.355 Sum_probs=43.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEeeCceEEEEEEecCCCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQF-SQDMIPTVGFNMRKITKGNVTIKVWDIGGQP 76 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~-~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e 76 (329)
-+..+.+-|+|.|||||||+||++..++. .....|++...++.+.. +-.+.+.|.||..
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L-dk~i~llDsPgiv 308 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL-DKKIRLLDSPGIV 308 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-cCCceeccCCcee
Confidence 35679999999999999999999998776 34445666555554432 2357799999953
No 418
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.87 E-value=0.038 Score=57.12 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
--++++|++||||||.+..|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 4689999999999999999874
No 419
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.82 E-value=0.21 Score=45.23 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=37.5
Q ss_pred hcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCC-hhhHHHHHHHhCCcEEE
Q psy2970 129 LFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP-ILVLGNKRDLPN-ALDEKELIDRIMIDFWI 194 (329)
Q Consensus 129 ~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~-~~e~~~l~~~~~~~~~e 194 (329)
..+.++++++.+ ..++......++.+.+.....+.+ ..++.||.|... ....+++.+.++.+++.
T Consensus 141 ~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 141 KADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQVIH 207 (212)
T ss_pred cCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCccHHHHHHHHHHHcCCCEEE
Confidence 456677777664 344444444333333221122444 458999999763 34567888888877554
No 420
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.81 E-value=0.0087 Score=47.52 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS 46 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~ 46 (329)
-.++++|++|+||||+++.+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 47899999999999999999875543
No 421
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.80 E-value=0.044 Score=59.50 Aligned_cols=22 Identities=41% Similarity=0.377 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
--|+++|+.||||||.+..+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 4689999999999999999875
No 422
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.76 E-value=0.16 Score=47.51 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=37.1
Q ss_pred hhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE-EEEEEcCCCCChhhHHHHHHHhCCcEEEE
Q psy2970 127 SLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI-LVLGNKRDLPNALDEKELIDRIMIDFWIT 195 (329)
Q Consensus 127 ~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI-iLVgNK~Dl~~~~e~~~l~~~~~~~~~et 195 (329)
-...+.++++...+ +.++......++.+.+.....+.++ -+|.|+.|. ....+++.++++.+++..
T Consensus 136 l~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~--~~~i~~~~~~~~~~vl~~ 202 (267)
T cd02032 136 LNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK--TDLIDKFVEAVGMPVLAV 202 (267)
T ss_pred hhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH--HHHHHHHHHhCCCCEEEE
Confidence 44567777777653 3444454444433322111245554 478999984 234566777788776553
No 423
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=95.74 E-value=0.36 Score=41.48 Aligned_cols=81 Identities=6% Similarity=-0.114 Sum_probs=49.5
Q ss_pred EEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH
Q psy2970 66 TIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL 145 (329)
Q Consensus 66 ~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~ 145 (329)
.+.|+|+|+.... .....+..+|.++ ++++.+. .++
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~vi-----------------------------------------iv~~~~~-~s~ 99 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEAL-----------------------------------------LVTTPEI-SSL 99 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEE-----------------------------------------EEeCCCc-chH
Confidence 5788999875432 2334567778777 7777653 445
Q ss_pred HHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChh---hHHHHHHHhCCcEE
Q psy2970 146 EASRNELHALIEKPQLIGIPILVLGNKRDLPNAL---DEKELIDRIMIDFW 193 (329)
Q Consensus 146 ~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~---e~~~l~~~~~~~~~ 193 (329)
......++.+... ......+|.|+.|..... ..+++.+.++.+++
T Consensus 100 ~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~~~~~~~~~~~~~~~~~v~ 147 (179)
T cd02036 100 RDADRVKGLLEAL---GIKVVGVIVNRVRPDMVEGGDMVEDIEEILGVPLL 147 (179)
T ss_pred HHHHHHHHHHHHc---CCceEEEEEeCCcccccchhhHHHHHHHHhCCCEE
Confidence 5555544444331 123467899999876532 23566777787755
No 424
>PRK01889 GTPase RsgA; Reviewed
Probab=95.73 E-value=0.043 Score=54.36 Aligned_cols=82 Identities=10% Similarity=-0.051 Sum_probs=53.6
Q ss_pred hhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh--HHHHHH-HhCCcEEEEeccchHHH
Q psy2970 127 SLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD--EKELID-RIMIDFWITLTLLIRWC 203 (329)
Q Consensus 127 ~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e--~~~l~~-~~~~~~~etSAk~~~~~ 203 (329)
+--.|.+++|+++..+-....+..++..+ + ..++|.+||+||+||.+..+ .+.+.+ ..+++.+.+|+++....
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a-~---~~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALA-W---ESGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGL 185 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHH-H---HcCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccH
Confidence 34467788999996433333333333333 2 25678899999999976421 222322 34678999999998888
Q ss_pred HHHhhhhcC
Q psy2970 204 ESFLHHFGS 212 (329)
Q Consensus 204 ~~~l~~i~~ 212 (329)
+++...+..
T Consensus 186 ~~L~~~L~~ 194 (356)
T PRK01889 186 DVLAAWLSG 194 (356)
T ss_pred HHHHHHhhc
Confidence 888877754
No 425
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.72 E-value=0.05 Score=53.02 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQF 45 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~ 45 (329)
--+++++|++|.|||+++++|.....
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp 86 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHP 86 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCC
Confidence 35799999999999999999998653
No 426
>KOG1424|consensus
Probab=95.72 E-value=0.016 Score=59.80 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=35.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEeeCceEEEEEEecCCCc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRKITKGNVTIKVWDIGGQP 76 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~i~~~~~~l~I~DtpG~e 76 (329)
.+.|-+||.|||||||+||.|.+++-. ....|.-.--+..+.. .-.+.+-|+||..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l-s~~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL-SPSVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc-CCCceecCCCCcc
Confidence 488999999999999999999998753 1111211122222211 1124578999953
No 427
>KOG0463|consensus
Probab=95.70 E-value=0.022 Score=57.24 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=45.9
Q ss_pred EECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHH
Q psy2970 137 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCES 205 (329)
Q Consensus 137 ~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~ 205 (329)
+|..-.+-+++...++..++..+...++|+ +|-++-|+... +.+|..+-.+|.|.+|..++.+++.
T Consensus 283 IDMCPANiLqEtmKll~rllkS~gcrK~Pv-lVrs~DDVv~~--A~NF~Ser~CPIFQvSNVtG~NL~L 348 (641)
T KOG0463|consen 283 IDMCPANILQETMKLLTRLLKSPGCRKLPV-LVRSMDDVVHA--AVNFPSERVCPIFQVSNVTGTNLPL 348 (641)
T ss_pred eccCcHHHHHHHHHHHHHHhcCCCcccCcE-EEecccceEEe--eccCccccccceEEeccccCCChHH
Confidence 355545667777777888888777778886 56788776543 3345566678999999999555443
No 428
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.65 E-value=0.011 Score=50.93 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 5 LNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 5 ~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+..+.+.+......+.-.++|.|++|+|||+|++++..
T Consensus 9 ~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 9 IERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp HHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34445555433345556799999999999999999865
No 429
>KOG0460|consensus
Probab=95.63 E-value=0.11 Score=51.84 Aligned_cols=136 Identities=19% Similarity=0.260 Sum_probs=80.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc-------CCC---------CCCCCCceeeeEEEeeCc--eEEEEEEecCCCcccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS-------GQF---------SQDMIPTVGFNMRKITKG--NVTIKVWDIGGQPRFR 79 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~-------~~~---------~~~~~pTig~~~~~i~~~--~~~l~I~DtpG~e~~~ 79 (329)
|..++|--+|--.-|||||.-+++. .++ ++.....+.++...+.+. .-...=.|.||+.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 4568999999999999999999864 111 122223333333333322 2334567999988763
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
..-..-....|+.| +|+..+|-. +...++-+.-..+
T Consensus 132 KNMItGaaqMDGaI-----------------------------------------LVVaatDG~-MPQTrEHlLLArQ-- 167 (449)
T KOG0460|consen 132 KNMITGAAQMDGAI-----------------------------------------LVVAATDGP-MPQTREHLLLARQ-- 167 (449)
T ss_pred HHhhcCccccCceE-----------------------------------------EEEEcCCCC-CcchHHHHHHHHH--
Confidence 22111223457777 999998843 2233332222211
Q ss_pred cCCCCc-EEEEEEcCCCCCh--------hhHHHHHHHhC-----CcEEEEeccc
Q psy2970 160 QLIGIP-ILVLGNKRDLPNA--------LDEKELIDRIM-----IDFWITLTLL 199 (329)
Q Consensus 160 ~~~~iP-IiLVgNK~Dl~~~--------~e~~~l~~~~~-----~~~~etSAk~ 199 (329)
-+++ ++|+.||.|+.++ -|..++..+++ +|.+.=||..
T Consensus 168 --VGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ 219 (449)
T KOG0460|consen 168 --VGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALC 219 (449)
T ss_pred --cCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhh
Confidence 2333 7788999999854 24556777776 4677777765
No 430
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.63 E-value=0.0096 Score=48.43 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999764
No 431
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.62 E-value=0.007 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 432
>KOG0465|consensus
Probab=95.58 E-value=0.022 Score=59.89 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=75.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--C------CCC------------CCCceeeeEEEeeCceEEEEEEecCCCccccch
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ--F------SQD------------MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~--~------~~~------------~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~ 81 (329)
+|-+.----+||||+-.++.... . .+. ..-|+...-..+..+++++.++||||+.+|.-.
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E 120 (721)
T KOG0465|consen 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE 120 (721)
T ss_pred ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE
Confidence 45555566799999999986311 0 000 001111111124566899999999999999877
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC-cccHHHHHHHHHHHHhCCc
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD-TDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~-~~S~~~~~~~l~~i~~~~~ 160 (329)
.+..++--|+.+ +|+|... -++ .....++++.+
T Consensus 121 VeRALrVlDGaV-----------------------------------------lvl~aV~GVqs--Qt~tV~rQ~~r--- 154 (721)
T KOG0465|consen 121 VERALRVLDGAV-----------------------------------------LVLDAVAGVES--QTETVWRQMKR--- 154 (721)
T ss_pred ehhhhhhccCeE-----------------------------------------EEEEcccceeh--hhHHHHHHHHh---
Confidence 777888888888 7777543 222 22223344422
Q ss_pred CCCCcEEEEEEcCCCCCh---hhHHHHHHHhC
Q psy2970 161 LIGIPILVLGNKRDLPNA---LDEKELIDRIM 189 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~ 189 (329)
-++|.+.+.||.|...+ .....+..+++
T Consensus 155 -y~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~ 185 (721)
T KOG0465|consen 155 -YNVPRICFINKMDRMGASPFRTLNQIRTKLN 185 (721)
T ss_pred -cCCCeEEEEehhhhcCCChHHHHHHHHhhcC
Confidence 47999999999998765 23444444444
No 433
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=0.026 Score=63.63 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=19.3
Q ss_pred HHHHHHhCCcCCCCcEEEEEEcCCCCCh
Q psy2970 151 ELHALIEKPQLIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 151 ~l~~i~~~~~~~~iPIiLVgNK~Dl~~~ 178 (329)
-+.++.+.. ....||.|++||.|+..-
T Consensus 245 RL~El~~tL-~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 245 RLQELRETL-HARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHHhh-ccCCceEEEEeccccccc
Confidence 344554432 367999999999999763
No 434
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.57 E-value=0.27 Score=49.53 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=33.4
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|+|++.. ...+.+.+..... . -+-=++.+|.|-... -.+-.++.+.+.|...++.
T Consensus 291 LVlsat~~--~~~~~~~~~~~~~----~-~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~ 347 (388)
T PRK12723 291 LAVSSTTK--TSDVKEIFHQFSP----F-SYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTD 347 (388)
T ss_pred EEEcCCCC--HHHHHHHHHHhcC----C-CCCEEEEEeccCCCcchHHHHHHHHHCCCEEEEeC
Confidence 89998764 2333333333311 1 123578899998665 3456677778887655543
No 435
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.51 E-value=0.022 Score=56.15 Aligned_cols=142 Identities=14% Similarity=0.111 Sum_probs=76.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc----CC----------CC-------CCCCCceeeeEE-----------------E
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS----GQ----------FS-------QDMIPTVGFNMR-----------------K 59 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~----~~----------~~-------~~~~pTig~~~~-----------------~ 59 (329)
++..-|+++|-.||||||-+-.+.. +. |. .......|..+- .
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 4578899999999999998887742 11 10 000000111111 1
Q ss_pred eeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEEC
Q psy2970 60 ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139 (329)
Q Consensus 60 i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dv 139 (329)
-..+++-+.+.||+|...-..-....++....++ .|......+= ++++.|.
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~--------~k~~~~ap~e---------------------~llvlDA 267 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVI--------KKDDPDAPHE---------------------ILLVLDA 267 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHh--------ccccCCCCce---------------------EEEEEEc
Confidence 1345677899999996654443333444444343 1111111111 2277797
Q ss_pred CC-cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEe
Q psy2970 140 AD-TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITL 196 (329)
Q Consensus 140 t~-~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etS 196 (329)
+- ++.++..+. +.+.... -=++.+|.|-... --.-.++.++++|...+-
T Consensus 268 ttGqnal~QAk~-F~eav~l-------~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiG 318 (340)
T COG0552 268 TTGQNALSQAKI-FNEAVGL-------DGIILTKLDGTAKGGIILSIAYELGIPIKFIG 318 (340)
T ss_pred ccChhHHHHHHH-HHHhcCC-------ceEEEEecccCCCcceeeeHHHHhCCCEEEEe
Confidence 64 444444433 4444321 1367899995443 234567788888865553
No 436
>KOG2423|consensus
Probab=95.50 E-value=0.015 Score=58.65 Aligned_cols=72 Identities=19% Similarity=0.214 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcC-CCCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEeeCceEEEEEEecCCCcc
Q psy2970 5 LNRILDWFKSLF-WKEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRKITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 5 ~~~~~~~~~~~~-~~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~ 77 (329)
+-.++..|.++- -++++-|-++|.||+||||+||.|-..++- ...+|...-. ..+-.-.-++-++|+||...
T Consensus 291 lI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKV-WQYItLmkrIfLIDcPGvVy 364 (572)
T KOG2423|consen 291 LIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKV-WQYITLMKRIFLIDCPGVVY 364 (572)
T ss_pred HHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchH-HHHHHHHhceeEecCCCccC
Confidence 334555555554 678899999999999999999999887663 2223322111 11111122456889999543
No 437
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.49 E-value=0.012 Score=48.89 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.=.++|+|+.|+|||||++.+.+..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3478999999999999999887743
No 438
>PRK06217 hypothetical protein; Validated
Probab=95.44 E-value=0.013 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+|+|+|.+||||||+.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 439
>PRK03839 putative kinase; Provisional
Probab=95.43 E-value=0.012 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++|+++|.||+||||+.+++...
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999764
No 440
>PRK01889 GTPase RsgA; Reviewed
Probab=95.43 E-value=0.02 Score=56.69 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
-+++++|.+|+|||||+|.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 479999999999999999998743
No 441
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.42 E-value=0.012 Score=47.59 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999764
No 442
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.41 E-value=0.077 Score=51.70 Aligned_cols=77 Identities=17% Similarity=0.055 Sum_probs=53.8
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHH-----HHHHHhCCcEEEEeccchHHHHHHhhh
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK-----ELIDRIMIDFWITLTLLIRWCESFLHH 209 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~-----~l~~~~~~~~~etSAk~~~~~~~~l~~ 209 (329)
+|+.+.+|+-=....+-+.-+.+ ..++.-+|+.||+||.+.++.+ .+...++++.+.+|+++....+++...
T Consensus 85 iIvs~~~P~~~~~~ldR~Lv~ae---~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~ 161 (301)
T COG1162 85 IVVSLVDPDFNTNLLDRYLVLAE---AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAEL 161 (301)
T ss_pred EEEeccCCCCCHHHHHHHHHHHH---HcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHH
Confidence 78888887643344333333333 3567778889999998764433 366678899999999998888888777
Q ss_pred hcCCC
Q psy2970 210 FGSHP 214 (329)
Q Consensus 210 i~~~~ 214 (329)
+....
T Consensus 162 l~~~~ 166 (301)
T COG1162 162 LAGKI 166 (301)
T ss_pred hcCCe
Confidence 75543
No 443
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.33 E-value=0.072 Score=50.61 Aligned_cols=34 Identities=29% Similarity=0.239 Sum_probs=25.2
Q ss_pred HHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 11 WFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 11 ~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.+........--|++.|++|+||||+++.+...-
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 3444443344469999999999999999997654
No 444
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.30 E-value=0.014 Score=51.16 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-++|+|++|||||||++++...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 445
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.24 E-value=0.094 Score=41.65 Aligned_cols=64 Identities=9% Similarity=0.011 Sum_probs=37.6
Q ss_pred EEEEc-CCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 23 LTLVG-LQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 23 IlllG-~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
|++.| .+|+||||+...+...--. .-.++.-.+ .+ ..+.+.++|+|+... ......+..+|.++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d---~d-~~~d~viiD~p~~~~--~~~~~~l~~ad~vi 66 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLID---LD-PQYDYIIIDTPPSLG--LLTRNALAAADLVL 66 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEe---CC-CCCCEEEEeCcCCCC--HHHHHHHHHCCEEE
Confidence 45666 6899999988877532111 111121111 11 126788999998643 23346777788888
No 446
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.22 E-value=0.017 Score=43.47 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|.+.|++|+||||+.+++...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999764
No 447
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.20 E-value=0.016 Score=51.52 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=31.0
Q ss_pred EEEEE-CCCccc-HHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHHHhCCcEEEEeccc
Q psy2970 134 KYMVD-AADTDK-LEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIMIDFWITLTLL 199 (329)
Q Consensus 134 ~lV~D-vt~~~S-~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~ 199 (329)
++|+| +...+- -......+.++++ .+.|++.+.-+.. +..-.+++.+..++..+++....
T Consensus 98 liviDEIG~mEl~~~~F~~~v~~~l~----s~~~vi~vv~~~~--~~~~l~~i~~~~~~~i~~vt~~N 159 (168)
T PF03266_consen 98 LIVIDEIGKMELKSPGFREAVEKLLD----SNKPVIGVVHKRS--DNPFLEEIKRRPDVKIFEVTEEN 159 (168)
T ss_dssp EEEE---STTCCC-CHHHHHHHHHHC----TTSEEEEE--SS----SCCHHHHHTTTTSEEEE--TTT
T ss_pred EEEEeccchhhhcCHHHHHHHHHHHc----CCCcEEEEEecCC--CcHHHHHHHhCCCcEEEEeChhH
Confidence 38888 443322 1233444445544 5678888888873 22346677777788888876555
No 448
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.18 E-value=0.017 Score=51.27 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++|+|++|+|||||++.+.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999664
No 449
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.14 E-value=0.02 Score=43.12 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-.+|.|+.|+|||||+.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998853
No 450
>PRK14532 adenylate kinase; Provisional
Probab=95.12 E-value=0.017 Score=50.98 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++|+++|+|||||||+.+++...
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 451
>PRK08233 hypothetical protein; Provisional
Probab=95.11 E-value=0.022 Score=49.44 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..-|.+.|.+|||||||.+++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 456788899999999999999864
No 452
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.10 E-value=0.021 Score=51.39 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++...|.|.|++|||||||.+.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999764
No 453
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.08 E-value=0.38 Score=44.91 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=36.8
Q ss_pred hhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE-EEEEEcCCCCChhhHHHHHHHhCCcEEEE
Q psy2970 128 LLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI-LVLGNKRDLPNALDEKELIDRIMIDFWIT 195 (329)
Q Consensus 128 ~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI-iLVgNK~Dl~~~~e~~~l~~~~~~~~~et 195 (329)
...+.++++... +..++......++.+.+.....++++ -+|.|+.|.. ...+++.++++.+++..
T Consensus 137 ~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~--~~~~~~~~~~~~~vl~~ 202 (268)
T TIGR01281 137 QYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT--DLIERFNERVGMPVLGV 202 (268)
T ss_pred hhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH--HHHHHHHHHcCCCEEEE
Confidence 345666666544 34445555444443333211245654 4788998865 34556677788887754
No 454
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.07 E-value=0.019 Score=50.17 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-|+|+|++|||||||++.+.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 48999999999999999998743
No 455
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.01 E-value=0.019 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.294 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-|+++|.+||||||+.+.+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999974
No 456
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=94.99 E-value=0.21 Score=40.59 Aligned_cols=101 Identities=11% Similarity=0.000 Sum_probs=55.6
Q ss_pred EcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhcc
Q psy2970 26 VGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHI 105 (329)
Q Consensus 26 lG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~ 105 (329)
=+.+|+||||+...+...--......+.-.+...- ....+.+.|+|+... ......+..+|.++
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~--~~~D~IIiDtpp~~~--~~~~~~l~~aD~vl------------ 69 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ--FGDDYVVVDLGRSLD--EVSLAALDQADRVF------------ 69 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC--CCCCEEEEeCCCCcC--HHHHHHHHHcCeEE------------
Confidence 35799999998887753211110111111111100 111678999998653 23345677888888
Q ss_pred ccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 106 KRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
++.+.+ ..++......+..+.+........+.+|+|+
T Consensus 70 -----------------------------vvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 70 -----------------------------LVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred -----------------------------EEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 777764 4456666665555544321113457788885
No 457
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.98 E-value=0.025 Score=57.45 Aligned_cols=24 Identities=46% Similarity=0.522 Sum_probs=20.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~ 41 (329)
+.+..|+++|..|+||||..-.+.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA 121 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLA 121 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHH
Confidence 456789999999999999887764
No 458
>PRK14530 adenylate kinase; Provisional
Probab=94.98 E-value=0.02 Score=52.08 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+|+|+|+|||||||+.+.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 459
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.97 E-value=0.033 Score=49.61 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=25.9
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 9 LDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 9 ~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..+++.... ..-.++++|++|+||||+++.+.+-
T Consensus 15 ~~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 15 AAYLWLAVE-ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344444443 3567999999999999999998864
No 460
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.96 E-value=0.021 Score=48.72 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 461
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=94.93 E-value=0.046 Score=48.64 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=33.9
Q ss_pred ceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHHHh
Q psy2970 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188 (329)
Q Consensus 131 ~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~ 188 (329)
|++++|+|+.++.+-.. ..+.+.+. ....+.|+++|.||+|+.+.....++.+.+
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHH
Confidence 46779999988632111 12222211 112468999999999998876655555554
No 462
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.91 E-value=0.024 Score=47.49 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 463
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.78 E-value=0.027 Score=50.85 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++..-|.+.|++|+|||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45677899999999999999999763
No 464
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.78 E-value=0.11 Score=51.54 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
+.+.+|++.|++|+|||||++.+.+.-
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHccc
Confidence 356899999999999999999998754
No 465
>KOG1143|consensus
Probab=94.77 E-value=0.057 Score=54.30 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
+++++++|...+|||||+--++.+.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQge 191 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGE 191 (591)
T ss_pred EEEEEEecCcccCcceeeeeeeccc
Confidence 5899999999999999998887644
No 466
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.77 E-value=0.022 Score=53.32 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
=.++++|++|||||||++.+-+=+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc
Confidence 368899999999999999997644
No 467
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.70 E-value=0.024 Score=50.53 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|.|.|++|||||||.+.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999764
No 468
>PRK06696 uridine kinase; Validated
Probab=94.70 E-value=0.056 Score=49.50 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 4 LLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 4 ~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++..+-+...+....+.+-|+|-|.+|||||||.+++..
T Consensus 6 ~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 6 LIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 345555566555566789999999999999999999875
No 469
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.67 E-value=0.028 Score=52.45 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+..++|+|+|+|||||||+.+.+...
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34588999999999999999999663
No 470
>PRK02496 adk adenylate kinase; Provisional
Probab=94.66 E-value=0.029 Score=49.46 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++|+++|+||+||||+.+.+...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999753
No 471
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.65 E-value=0.026 Score=53.51 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
=|.++|++|+|||||+|-+.+
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999976
No 472
>PRK13949 shikimate kinase; Provisional
Probab=94.61 E-value=0.029 Score=49.61 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
+|+|+|.+|+||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988753
No 473
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.60 E-value=0.027 Score=49.30 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|+++|+|||||||+.+++...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999763
No 474
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.59 E-value=0.024 Score=49.76 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
+|+|+|+|||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 475
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.56 E-value=0.046 Score=50.60 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=25.3
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 8 ILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 8 ~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++..+.....+..-.+++.|++|+||||+++.+.+.
T Consensus 31 ~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 333333333333446899999999999999999764
No 476
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.55 E-value=0.058 Score=49.63 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+..-|.+.|++|+|||||++.+.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56788999999999999999998764
No 477
>PF05729 NACHT: NACHT domain
Probab=94.51 E-value=0.03 Score=47.07 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
++|.|++|+||||++.++...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 689999999999999998753
No 478
>PHA00729 NTP-binding motif containing protein
Probab=94.51 E-value=0.062 Score=50.35 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 2 FVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 2 ~~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-+-.++..-+... .-.+|++.|.||+|||+|..++...
T Consensus 2 ~~~~k~~~~~l~~~---~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 2 LWLAKKIVSAYNNN---GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred chHHHHHHHHHhcC---CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 33445555555444 3358999999999999999998763
No 479
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.48 E-value=0.14 Score=50.31 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=26.7
Q ss_pred HHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCC
Q psy2970 10 DWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQF 45 (329)
Q Consensus 10 ~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~ 45 (329)
++++... +.+.+|++.|.+|+|||||++.+...-.
T Consensus 151 ~~L~~~v-~~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 151 EFLEHAV-ISKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHHHH-HcCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 4444332 3568999999999999999999986443
No 480
>PRK00625 shikimate kinase; Provisional
Probab=94.47 E-value=0.032 Score=49.83 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++|+++|.+||||||+.+.+...
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999653
No 481
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.46 E-value=0.034 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
=.++++|++|+|||||++.+.+-.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 368999999999999999998753
No 482
>KOG1487|consensus
Probab=94.44 E-value=0.084 Score=50.89 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEE-EeeCceEEEEEEecCCCc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMR-KITKGNVTIKVWDIGGQP 76 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~-~i~~~~~~l~I~DtpG~e 76 (329)
-++-++|.|.+||||++..+.+-.-+ ..|.-|.-..+. .+.++.-++++.|+||..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgii 117 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGII 117 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchh
Confidence 48899999999999999999875432 333333333332 245778889999999954
No 483
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.43 E-value=0.034 Score=49.97 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+. .++++|++|+|||||++.+.+-
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCC
Confidence 35 8999999999999999999874
No 484
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.42 E-value=0.039 Score=50.12 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+..-|+|+|++|||||||++++...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4566889999999999999999754
No 485
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.42 E-value=0.031 Score=48.12 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-|.++|+.|+|||||++.+.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 486
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.41 E-value=0.036 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+..++++|+|.+|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 56689999999999999999999854
No 487
>PRK14531 adenylate kinase; Provisional
Probab=94.39 E-value=0.035 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+|+++|+||+||||+.+++...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999653
No 488
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.38 E-value=0.034 Score=50.07 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
..=|+|+|++|||||||++++....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3458999999999999999998753
No 489
>PRK04195 replication factor C large subunit; Provisional
Probab=94.37 E-value=0.16 Score=52.11 Aligned_cols=39 Identities=23% Similarity=0.432 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCC-ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 6 NRILDWFKSLFWKE-EMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 6 ~~~~~~~~~~~~~k-~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
..+..|+....... .-.++|.|++|+||||+++.+...-
T Consensus 24 ~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 24 EQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34455555432111 4568999999999999999997643
No 490
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.36 E-value=0.032 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-++++|++|||||||+|-+-+-+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58899999999999999886643
No 491
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.35 E-value=0.04 Score=49.18 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+.--|+++|++|||||||++.+.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4456999999999999999999874
No 492
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.31 E-value=0.034 Score=45.45 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=18.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
++--+++.|++|+|||++++++....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999998743
No 493
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.28 E-value=0.063 Score=53.55 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcC---CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 5 LNRILDWFKSLF---WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 5 ~~~~~~~~~~~~---~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.++.+|++... ..++-=++++|+||+|||||.+++..
T Consensus 60 i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~ 100 (361)
T smart00763 60 IERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKR 100 (361)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 455566666543 22334479999999999999999975
No 494
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.25 E-value=0.03 Score=48.18 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|+++|++|+||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999998764
No 495
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.25 E-value=0.04 Score=49.74 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
=.++++|++|+|||||++.+.+-.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998743
No 496
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.21 E-value=0.042 Score=49.35 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
=.+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999998753
No 497
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.20 E-value=0.039 Score=48.88 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
.+.++|++|+|||||++.+.+-.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988743
No 498
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.18 E-value=0.047 Score=49.83 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
+..-++|.|++|||||||++++....
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 34568899999999999999998765
No 499
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.17 E-value=0.043 Score=48.97 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
=.+.++|++|+|||||++.+.+-.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998743
No 500
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.17 E-value=0.043 Score=49.28 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
=.++++|++|+|||||++.+.+-
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36889999999999999999874
Done!