Query psy2970
Match_columns 329
No_of_seqs 272 out of 2122
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 22:14:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.3E-31 4.5E-36 243.0 13.7 151 18-210 11-170 (216)
2 1ksh_A ARF-like protein 2; sma 100.0 3.8E-28 1.3E-32 208.7 16.1 165 1-211 2-175 (186)
3 1zj6_A ADP-ribosylation factor 100.0 8.4E-28 2.9E-32 207.5 16.1 164 1-210 1-172 (187)
4 2x77_A ADP-ribosylation factor 99.9 6.2E-28 2.1E-32 208.3 12.3 168 1-211 3-179 (189)
5 1moz_A ARL1, ADP-ribosylation 99.9 2.2E-27 7.5E-32 202.6 15.0 166 1-211 1-175 (183)
6 1m2o_B GTP-binding protein SAR 99.9 3.6E-27 1.2E-31 205.8 16.6 167 1-211 6-187 (190)
7 3t5g_A GTP-binding protein RHE 99.9 5.3E-27 1.8E-31 200.3 17.2 153 18-211 4-164 (181)
8 1kao_A RAP2A; GTP-binding prot 99.9 1.1E-26 3.7E-31 193.4 18.0 152 19-211 2-161 (167)
9 1f6b_A SAR1; gtpases, N-termin 99.9 4.2E-27 1.4E-31 207.0 15.6 154 16-211 21-194 (198)
10 1c1y_A RAS-related protein RAP 99.9 7.1E-27 2.4E-31 195.4 16.2 151 19-210 2-161 (167)
11 1zd9_A ADP-ribosylation factor 99.9 7.9E-27 2.7E-31 202.3 16.9 155 16-211 18-180 (188)
12 4dsu_A GTPase KRAS, isoform 2B 99.9 1.6E-26 5.6E-31 197.3 18.4 153 18-211 2-161 (189)
13 2b6h_A ADP-ribosylation factor 99.9 4.8E-27 1.6E-31 205.4 15.3 159 10-210 19-185 (192)
14 3kkq_A RAS-related protein M-R 99.9 1.3E-26 4.5E-31 198.2 17.3 153 17-210 15-176 (183)
15 1fzq_A ADP-ribosylation factor 99.9 1.1E-26 3.8E-31 200.9 16.2 159 11-211 5-173 (181)
16 1r8s_A ADP-ribosylation factor 99.9 1.3E-26 4.4E-31 194.1 15.9 149 21-211 1-157 (164)
17 3oes_A GTPase rhebl1; small GT 99.9 1.8E-26 6E-31 202.1 17.2 154 17-211 21-182 (201)
18 1u8z_A RAS-related protein RAL 99.9 1.4E-26 4.7E-31 192.9 15.8 151 19-210 3-161 (168)
19 3reg_A RHO-like small GTPase; 99.9 1.4E-26 4.9E-31 200.9 15.6 151 17-210 20-182 (194)
20 1upt_A ARL1, ADP-ribosylation 99.9 3.3E-26 1.1E-30 192.5 17.1 151 18-210 5-163 (171)
21 2fn4_A P23, RAS-related protei 99.9 2.1E-26 7.3E-31 194.9 16.0 153 18-211 7-167 (181)
22 4bas_A ADP-ribosylation factor 99.9 1.5E-26 5.3E-31 199.9 14.6 153 18-211 15-184 (199)
23 3c5c_A RAS-like protein 12; GD 99.9 2.5E-26 8.7E-31 199.6 15.8 151 18-210 19-180 (187)
24 2atv_A RERG, RAS-like estrogen 99.9 2.7E-26 9.3E-31 199.8 15.3 158 11-210 19-185 (196)
25 1r2q_A RAS-related protein RAB 99.9 4.7E-26 1.6E-30 190.5 16.1 152 18-211 4-164 (170)
26 3q3j_B RHO-related GTP-binding 99.9 4.3E-26 1.5E-30 203.1 16.6 151 18-211 25-198 (214)
27 1ek0_A Protein (GTP-binding pr 99.9 6.1E-26 2.1E-30 189.8 16.4 151 19-211 2-164 (170)
28 3q72_A GTP-binding protein RAD 99.9 4.6E-26 1.6E-30 191.1 15.3 150 20-211 2-159 (166)
29 1z06_A RAS-related protein RAB 99.9 4.6E-26 1.6E-30 196.9 15.7 154 17-211 17-183 (189)
30 2bov_A RAla, RAS-related prote 99.9 1E-25 3.5E-30 195.7 17.9 154 17-211 11-172 (206)
31 3bc1_A RAS-related protein RAB 99.9 8.8E-26 3E-30 192.8 17.0 154 17-211 8-180 (195)
32 2a9k_A RAS-related protein RAL 99.9 6.5E-26 2.2E-30 192.9 15.8 153 18-211 16-176 (187)
33 1x3s_A RAS-related protein RAB 99.9 8.9E-26 3E-30 194.1 16.8 151 19-210 14-172 (195)
34 2ce2_X GTPase HRAS; signaling 99.9 1.5E-25 5.2E-30 185.8 17.7 151 19-210 2-159 (166)
35 3ihw_A Centg3; RAS, centaurin, 99.9 1.3E-25 4.4E-30 195.4 17.7 149 17-211 17-175 (184)
36 1z0j_A RAB-22, RAS-related pro 99.9 1.1E-25 3.8E-30 188.7 16.6 152 18-211 4-164 (170)
37 2h57_A ADP-ribosylation factor 99.9 7.6E-26 2.6E-30 195.7 15.9 154 17-211 18-182 (190)
38 1z08_A RAS-related protein RAB 99.9 3.8E-26 1.3E-30 191.9 13.3 151 18-210 4-163 (170)
39 1z2a_A RAS-related protein RAB 99.9 3.6E-26 1.2E-30 191.3 13.1 150 18-210 3-161 (168)
40 3tw8_B RAS-related protein RAB 99.9 7.6E-26 2.6E-30 191.5 15.2 152 17-211 6-166 (181)
41 3tkl_A RAS-related protein RAB 99.9 1.7E-25 6E-30 192.8 17.7 152 18-211 14-174 (196)
42 1g16_A RAS-related protein SEC 99.9 6.7E-26 2.3E-30 190.0 14.7 151 19-211 2-160 (170)
43 2efe_B Small GTP-binding prote 99.9 1.5E-25 5.3E-30 190.4 17.1 153 17-211 9-170 (181)
44 2hup_A RAS-related protein RAB 99.9 5E-26 1.7E-30 200.2 14.6 153 17-211 26-188 (201)
45 2g6b_A RAS-related protein RAB 99.9 9.3E-26 3.2E-30 191.6 15.6 154 16-211 6-169 (180)
46 1m7b_A RND3/RHOE small GTP-bin 99.9 1.4E-25 4.9E-30 193.4 16.9 150 18-210 5-177 (184)
47 1z0f_A RAB14, member RAS oncog 99.9 1.1E-25 3.9E-30 190.1 15.9 152 17-210 12-172 (179)
48 2h17_A ADP-ribosylation factor 99.9 6E-26 2.1E-30 195.2 14.4 153 17-211 18-178 (181)
49 3q85_A GTP-binding protein REM 99.9 6.4E-26 2.2E-30 190.7 14.2 150 20-210 2-161 (169)
50 2nzj_A GTP-binding protein REM 99.9 2.1E-25 7.3E-30 188.2 17.4 152 18-211 2-164 (175)
51 2iwr_A Centaurin gamma 1; ANK 99.9 1.1E-25 3.9E-30 191.5 15.8 147 18-211 5-164 (178)
52 2fu5_C RAS-related protein RAB 99.9 2.1E-26 7.3E-31 196.9 10.8 152 18-211 6-166 (183)
53 2erx_A GTP-binding protein DI- 99.9 1.1E-25 3.7E-30 188.6 14.8 152 19-211 2-162 (172)
54 3cbq_A GTP-binding protein REM 99.9 8.2E-26 2.8E-30 198.6 14.6 153 17-210 20-182 (195)
55 2fg5_A RAB-22B, RAS-related pr 99.9 1.6E-25 5.4E-30 194.7 15.9 153 17-211 20-181 (192)
56 2bme_A RAB4A, RAS-related prot 99.9 1.3E-25 4.4E-30 192.1 14.9 152 18-211 8-168 (186)
57 2hxs_A RAB-26, RAS-related pro 99.9 6.2E-26 2.1E-30 192.4 12.8 153 17-210 3-167 (178)
58 2y8e_A RAB-protein 6, GH09086P 99.9 1.7E-25 5.7E-30 189.0 15.1 151 19-211 13-172 (179)
59 2a5j_A RAS-related protein RAB 99.9 1.4E-25 5E-30 194.4 15.0 152 18-211 19-179 (191)
60 2atx_A Small GTP binding prote 99.9 1.7E-25 5.9E-30 193.7 15.5 150 18-210 16-187 (194)
61 3bwd_D RAC-like GTP-binding pr 99.9 2.9E-26 9.9E-31 195.1 10.4 151 17-210 5-175 (182)
62 2gf9_A RAS-related protein RAB 99.9 2.2E-25 7.5E-30 192.6 15.9 153 17-211 19-180 (189)
63 2ew1_A RAS-related protein RAB 99.9 1.4E-25 4.7E-30 198.9 15.0 153 17-211 23-184 (201)
64 2oil_A CATX-8, RAS-related pro 99.9 3.5E-25 1.2E-29 191.6 17.0 152 17-210 22-182 (193)
65 3clv_A RAB5 protein, putative; 99.9 6.2E-25 2.1E-29 188.1 18.2 151 17-211 4-199 (208)
66 1zbd_A Rabphilin-3A; G protein 99.9 3E-25 1E-29 193.5 16.3 151 18-210 6-165 (203)
67 2f7s_A C25KG, RAS-related prot 99.9 1.3E-25 4.4E-30 198.1 14.2 154 17-211 22-194 (217)
68 2bcg_Y Protein YP2, GTP-bindin 99.9 2.9E-25 1E-29 194.3 16.0 152 18-211 6-166 (206)
69 3t1o_A Gliding protein MGLA; G 99.9 1.5E-25 5.2E-30 192.2 13.8 151 17-211 11-187 (198)
70 1gwn_A RHO-related GTP-binding 99.9 3.4E-25 1.2E-29 196.7 16.4 151 17-210 25-198 (205)
71 1wms_A RAB-9, RAB9, RAS-relate 99.9 2.9E-25 1E-29 188.0 15.2 152 18-210 5-168 (177)
72 2p5s_A RAS and EF-hand domain 99.9 1.5E-25 5.2E-30 195.8 13.8 156 13-210 21-191 (199)
73 2q3h_A RAS homolog gene family 99.9 2.3E-25 7.7E-30 194.0 14.6 152 17-211 17-190 (201)
74 3con_A GTPase NRAS; structural 99.9 4.3E-25 1.5E-29 190.2 16.0 152 19-211 20-178 (190)
75 2j0v_A RAC-like GTP-binding pr 99.9 1.5E-25 5.3E-30 196.9 13.3 150 18-210 7-174 (212)
76 1mh1_A RAC1; GTP-binding, GTPa 99.9 2.1E-25 7.2E-30 190.0 13.4 150 18-210 3-174 (186)
77 3dz8_A RAS-related protein RAB 99.9 5.3E-26 1.8E-30 197.2 9.6 152 18-211 21-181 (191)
78 2gf0_A GTP-binding protein DI- 99.9 4.2E-25 1.4E-29 190.8 14.7 153 18-211 6-166 (199)
79 2o52_A RAS-related protein RAB 99.9 1.9E-25 6.6E-30 196.0 12.7 153 17-211 22-183 (200)
80 1ky3_A GTP-binding protein YPT 99.9 4.1E-25 1.4E-29 187.1 13.5 154 17-211 5-173 (182)
81 2j1l_A RHO-related GTP-binding 99.9 3.7E-25 1.3E-29 196.4 13.8 151 18-211 32-204 (214)
82 2il1_A RAB12; G-protein, GDP, 99.9 5.1E-25 1.7E-29 191.8 13.4 152 17-210 23-184 (192)
83 3cph_A RAS-related protein SEC 99.9 9.7E-25 3.3E-29 190.8 14.8 153 17-211 17-177 (213)
84 2yc2_C IFT27, small RAB-relate 99.9 1.9E-25 6.5E-30 193.9 10.1 153 18-211 18-187 (208)
85 1vg8_A RAS-related protein RAB 99.9 9.5E-25 3.2E-29 190.1 14.4 153 18-211 6-170 (207)
86 4gzl_A RAS-related C3 botulinu 99.9 1.1E-24 3.6E-29 192.2 14.6 152 17-211 27-200 (204)
87 2gco_A H9, RHO-related GTP-bin 99.9 1.1E-24 3.9E-29 190.9 14.6 151 18-211 23-195 (201)
88 3cpj_B GTP-binding protein YPT 99.9 6.5E-25 2.2E-29 195.7 12.7 151 18-210 11-170 (223)
89 2g3y_A GTP-binding protein GEM 99.9 1.8E-24 6.1E-29 195.0 14.7 152 18-211 35-198 (211)
90 2fv8_A H6, RHO-related GTP-bin 99.9 3.5E-24 1.2E-28 188.6 14.9 151 18-211 23-195 (207)
91 3o47_A ADP-ribosylation factor 99.9 2.7E-24 9.2E-29 205.9 14.7 153 17-211 162-322 (329)
92 3gj0_A GTP-binding nuclear pro 99.9 4.6E-25 1.6E-29 195.8 8.3 151 17-210 12-169 (221)
93 2cjw_A GTP-binding protein GEM 99.9 7E-24 2.4E-28 185.8 15.4 152 18-211 4-167 (192)
94 2zej_A Dardarin, leucine-rich 99.9 9.7E-25 3.3E-29 188.8 9.4 148 20-210 2-172 (184)
95 3l0i_B RAS-related protein RAB 99.9 1.9E-25 6.6E-30 195.2 4.0 152 18-211 31-191 (199)
96 3lvq_E ARF-GAP with SH3 domain 99.9 1.4E-23 4.8E-28 209.5 17.6 153 17-211 319-479 (497)
97 4djt_A GTP-binding nuclear pro 99.9 2E-24 6.8E-29 190.6 10.1 151 18-210 9-169 (218)
98 3llu_A RAS-related GTP-binding 99.9 3.1E-23 1E-27 181.1 15.2 147 17-210 17-191 (196)
99 3th5_A RAS-related C3 botulinu 99.8 2.2E-25 7.7E-30 195.1 0.0 154 15-211 25-200 (204)
100 2fh5_B SR-beta, signal recogni 99.9 6.2E-23 2.1E-27 180.5 14.1 119 18-178 5-130 (214)
101 3r7w_B Gtpase2, GTP-binding pr 99.9 1.4E-23 4.7E-28 202.8 9.5 148 22-213 1-172 (331)
102 3r7w_A Gtpase1, GTP-binding pr 99.9 1.9E-22 6.5E-27 190.9 16.9 153 19-212 2-178 (307)
103 2wkq_A NPH1-1, RAS-related C3 99.9 9.1E-23 3.1E-27 190.2 14.1 150 18-210 153-324 (332)
104 2wji_A Ferrous iron transport 99.9 2.6E-22 8.7E-27 170.7 14.2 144 19-210 2-159 (165)
105 2f9l_A RAB11B, member RAS onco 99.9 6.2E-22 2.1E-26 173.2 15.2 152 18-211 3-163 (199)
106 2cxx_A Probable GTP-binding pr 99.9 1.6E-22 5.4E-27 173.0 8.9 148 21-211 2-179 (190)
107 2lkc_A Translation initiation 99.9 7.7E-22 2.6E-26 167.1 12.8 149 17-211 5-166 (178)
108 3c5h_A Glucocorticoid receptor 99.9 1.3E-22 4.3E-27 186.8 8.5 153 17-210 16-249 (255)
109 1oix_A RAS-related protein RAB 99.9 1.9E-21 6.5E-26 169.9 15.1 151 18-210 27-186 (191)
110 2wjg_A FEOB, ferrous iron tran 99.9 1.1E-21 3.7E-26 168.3 11.9 144 19-210 6-163 (188)
111 1nrj_B SR-beta, signal recogni 99.9 4.1E-22 1.4E-26 175.7 7.4 139 17-201 9-169 (218)
112 2dyk_A GTP-binding protein; GT 99.8 2.1E-21 7.1E-26 161.5 9.7 143 21-210 2-156 (161)
113 2qu8_A Putative nucleolar GTP- 99.8 1.4E-20 4.8E-25 168.5 15.5 151 18-211 27-200 (228)
114 2gj8_A MNME, tRNA modification 99.8 2.9E-21 1E-25 166.0 8.0 149 18-211 2-161 (172)
115 3dpu_A RAB family protein; roc 99.8 8.2E-21 2.8E-25 192.1 12.3 147 18-210 39-202 (535)
116 3a1s_A Iron(II) transport prot 99.8 1.1E-20 3.9E-25 174.9 11.6 145 18-210 3-161 (258)
117 3i8s_A Ferrous iron transport 99.8 1.6E-20 5.6E-25 174.9 12.2 146 19-212 2-165 (274)
118 1svi_A GTP-binding protein YSX 99.8 2.8E-20 9.7E-25 160.3 11.6 145 17-210 20-189 (195)
119 1cip_A Protein (guanine nucleo 99.8 5.8E-20 2E-24 178.6 14.9 121 50-211 178-339 (353)
120 3ohm_A Guanine nucleotide-bind 99.8 5.4E-20 1.8E-24 177.4 13.7 122 49-211 151-313 (327)
121 2ged_A SR-beta, signal recogni 99.8 1.4E-20 4.9E-25 162.2 8.6 123 17-185 45-178 (193)
122 3iby_A Ferrous iron transport 99.8 1.5E-20 5.3E-25 174.0 9.4 144 21-212 2-163 (256)
123 3b1v_A Ferrous iron uptake tra 99.8 3.1E-20 1E-24 173.9 11.0 144 19-211 2-159 (272)
124 3pqc_A Probable GTP-binding pr 99.8 7.5E-20 2.6E-24 156.6 11.0 146 17-211 20-189 (195)
125 4fid_A G protein alpha subunit 99.8 1.4E-19 4.8E-24 175.4 12.4 122 49-211 145-323 (340)
126 3k53_A Ferrous iron transport 99.8 1.6E-19 5.3E-24 167.1 11.4 145 19-210 2-160 (271)
127 3iev_A GTP-binding protein ERA 99.8 1.1E-18 3.9E-23 165.2 16.8 148 18-210 8-176 (308)
128 1wf3_A GTP-binding protein; GT 99.8 2.7E-18 9.2E-23 162.8 17.6 150 19-212 6-169 (301)
129 4dhe_A Probable GTP-binding pr 99.8 7.2E-19 2.5E-23 155.1 11.8 149 17-211 26-206 (223)
130 1zcb_A G alpha I/13; GTP-bindi 99.8 2.2E-18 7.4E-23 168.0 14.4 120 51-211 187-348 (362)
131 2xtz_A Guanine nucleotide-bind 99.8 4.9E-19 1.7E-23 172.1 7.6 108 63-211 181-340 (354)
132 1azs_C GS-alpha; complex (lyas 99.7 7.9E-18 2.7E-22 166.4 14.0 119 52-211 204-380 (402)
133 3gee_A MNME, tRNA modification 99.7 4.2E-18 1.4E-22 171.4 11.5 147 18-211 231-393 (476)
134 2e87_A Hypothetical protein PH 99.7 2.7E-17 9.2E-22 158.4 16.5 151 18-211 165-331 (357)
135 1mky_A Probable GTP-binding pr 99.7 6.6E-18 2.3E-22 167.1 11.6 142 22-210 3-160 (439)
136 1xzp_A Probable tRNA modificat 99.7 1.2E-17 4E-22 168.5 12.1 145 19-211 242-400 (482)
137 1lnz_A SPO0B-associated GTP-bi 99.7 7.4E-18 2.5E-22 163.0 9.7 149 22-211 160-325 (342)
138 2hjg_A GTP-binding protein ENG 99.7 1.2E-17 4.2E-22 165.0 11.1 146 19-210 174-343 (436)
139 2hjg_A GTP-binding protein ENG 99.7 7.7E-18 2.6E-22 166.5 7.5 144 21-211 4-160 (436)
140 3sjy_A Translation initiation 99.7 1.7E-16 5.8E-21 155.3 16.8 151 17-211 5-187 (403)
141 4dcu_A GTP-binding protein ENG 99.7 4.7E-17 1.6E-21 161.7 12.5 147 18-210 193-363 (456)
142 3lxw_A GTPase IMAP family memb 99.7 3.5E-16 1.2E-20 143.4 16.3 153 17-211 18-203 (247)
143 2xtp_A GTPase IMAP family memb 99.7 2E-16 6.9E-21 144.3 13.7 151 18-211 20-203 (260)
144 3qq5_A Small GTP-binding prote 99.7 4.9E-18 1.7E-22 168.8 3.0 146 17-210 31-190 (423)
145 3lxx_A GTPase IMAP family memb 99.7 2.4E-16 8.3E-21 142.2 12.8 151 17-210 26-208 (239)
146 1ega_A Protein (GTP-binding pr 99.7 2.4E-16 8.3E-21 148.9 12.7 147 19-212 7-171 (301)
147 3t5d_A Septin-7; GTP-binding p 99.7 1.9E-16 6.3E-21 146.8 11.3 160 19-211 7-199 (274)
148 2c78_A Elongation factor TU-A; 99.7 1.1E-15 3.7E-20 149.5 16.2 139 18-202 9-180 (405)
149 3p26_A Elongation factor 1 alp 99.7 1.7E-16 5.7E-21 159.1 10.1 144 17-203 30-225 (483)
150 1jny_A EF-1-alpha, elongation 99.7 1.1E-16 3.6E-21 158.5 8.5 144 18-203 4-200 (435)
151 2aka_B Dynamin-1; fusion prote 99.7 3.2E-16 1.1E-20 144.8 10.8 166 1-210 4-247 (299)
152 3j2k_7 ERF3, eukaryotic polype 99.7 4.5E-16 1.5E-20 154.6 12.3 144 17-205 14-214 (439)
153 3geh_A MNME, tRNA modification 99.6 7.5E-17 2.6E-21 161.8 6.3 145 18-210 222-378 (462)
154 1s0u_A EIF-2-gamma, translatio 99.6 1.2E-15 4.3E-20 149.4 14.6 151 17-211 5-193 (408)
155 1d2e_A Elongation factor TU (E 99.6 1.1E-15 3.6E-20 149.6 13.5 138 18-201 1-170 (397)
156 1mky_A Probable GTP-binding pr 99.6 2.1E-15 7.3E-20 149.1 15.3 146 20-211 180-350 (439)
157 1zun_B Sulfate adenylate trans 99.6 1.1E-15 3.8E-20 151.1 13.0 142 17-204 21-212 (434)
158 1kk1_A EIF2gamma; initiation o 99.6 1.8E-15 6.3E-20 148.2 14.3 152 16-211 6-195 (410)
159 3def_A T7I23.11 protein; chlor 99.6 1.5E-15 5.3E-20 139.7 12.7 118 18-177 34-165 (262)
160 1wb1_A Translation elongation 99.6 7.7E-16 2.6E-20 154.8 11.3 144 19-211 18-184 (482)
161 4dcu_A GTP-binding protein ENG 99.6 1.7E-16 5.9E-21 157.6 6.4 146 19-211 22-180 (456)
162 2qtf_A Protein HFLX, GTP-bindi 99.6 1.2E-15 4.2E-20 148.5 11.9 149 20-211 178-349 (364)
163 3tr5_A RF-3, peptide chain rel 99.6 2.7E-15 9.1E-20 152.8 14.7 126 19-190 12-164 (528)
164 2qag_A Septin-2, protein NEDD5 99.6 4.4E-16 1.5E-20 151.0 8.6 150 18-202 35-220 (361)
165 3cb4_D GTP-binding protein LEP 99.6 3.5E-15 1.2E-19 154.1 14.0 146 19-210 3-176 (599)
166 2ywe_A GTP-binding protein LEP 99.6 5.5E-15 1.9E-19 152.7 14.5 146 19-210 5-178 (600)
167 1r5b_A Eukaryotic peptide chai 99.6 6.2E-16 2.1E-20 154.7 6.4 147 13-204 36-240 (467)
168 3izq_1 HBS1P, elongation facto 99.6 1.6E-15 5.5E-20 156.8 9.4 142 18-204 165-360 (611)
169 1h65_A Chloroplast outer envel 99.6 1.3E-14 4.5E-19 133.9 14.2 120 18-179 37-170 (270)
170 1f60_A Elongation factor EEF1A 99.6 4.1E-15 1.4E-19 148.4 11.4 142 18-204 5-200 (458)
171 2elf_A Protein translation elo 99.6 5.3E-15 1.8E-19 144.1 11.3 136 22-211 23-175 (370)
172 3izy_P Translation initiation 99.6 9.1E-17 3.1E-21 164.0 -1.3 147 18-210 2-162 (537)
173 1g7s_A Translation initiation 99.5 9.5E-15 3.2E-19 150.7 10.5 144 19-211 4-213 (594)
174 1pui_A ENGB, probable GTP-bind 99.5 1.4E-14 4.9E-19 126.3 9.8 148 17-211 23-194 (210)
175 1jwy_B Dynamin A GTPase domain 99.5 2.8E-14 9.5E-19 133.1 12.3 153 2-199 4-239 (315)
176 1zo1_I IF2, translation initia 99.5 6.1E-16 2.1E-20 156.8 -0.6 145 18-211 2-162 (501)
177 1u0l_A Probable GTPase ENGC; p 99.5 3.9E-15 1.3E-19 140.6 5.0 130 35-212 32-169 (301)
178 3avx_A Elongation factor TS, e 99.5 4.7E-14 1.6E-18 154.4 12.3 149 17-211 293-481 (1289)
179 1wxq_A GTP-binding protein; st 99.5 3.3E-14 1.1E-18 139.9 9.5 45 163-207 214-261 (397)
180 3t34_A Dynamin-related protein 99.5 5.1E-14 1.7E-18 135.4 10.5 138 21-203 35-248 (360)
181 3mca_A HBS1, elongation factor 99.5 1.3E-15 4.6E-20 156.8 -1.4 143 17-204 174-371 (592)
182 2x2e_A Dynamin-1; nitration, h 99.5 4.7E-14 1.6E-18 135.6 9.3 165 1-209 9-251 (353)
183 1dar_A EF-G, elongation factor 99.5 1.4E-13 4.8E-18 144.0 13.6 127 18-190 10-159 (691)
184 2h5e_A Peptide chain release f 99.5 1.7E-13 6E-18 139.4 12.9 128 18-191 11-165 (529)
185 2qnr_A Septin-2, protein NEDD5 99.5 1.1E-13 3.6E-18 131.0 9.7 156 17-208 15-206 (301)
186 2dy1_A Elongation factor G; tr 99.5 7.1E-13 2.4E-17 138.1 15.4 125 18-189 7-154 (665)
187 2qpt_A EH domain-containing pr 99.4 2.4E-13 8.1E-18 138.9 11.4 125 19-188 64-243 (550)
188 2j69_A Bacterial dynamin-like 99.4 4.2E-13 1.4E-17 140.5 10.8 117 17-178 66-245 (695)
189 2xex_A Elongation factor G; GT 99.4 2E-12 6.9E-17 135.3 15.5 134 18-197 8-168 (693)
190 1jal_A YCHF protein; nucleotid 99.4 3.4E-12 1.2E-16 124.6 15.5 74 20-93 2-101 (363)
191 1udx_A The GTP-binding protein 99.4 1.6E-12 5.4E-17 128.9 12.7 149 21-211 158-320 (416)
192 2qag_C Septin-7; cell cycle, c 99.4 1.2E-12 4.2E-17 129.8 11.1 158 18-210 29-221 (418)
193 2rdo_7 EF-G, elongation factor 99.4 7.6E-12 2.6E-16 131.3 16.0 127 18-190 8-164 (704)
194 1n0u_A EF-2, elongation factor 99.3 2.8E-12 9.6E-17 136.9 9.9 113 18-176 17-163 (842)
195 3p32_A Probable GTPase RV1496/ 99.3 4E-12 1.4E-16 122.4 8.0 142 17-211 76-279 (355)
196 2dby_A GTP-binding protein; GD 99.3 2.1E-11 7.1E-16 119.1 12.9 73 21-93 2-104 (368)
197 2wsm_A Hydrogenase expression/ 99.2 1.4E-11 4.7E-16 108.6 6.5 163 19-211 29-209 (221)
198 1yrb_A ATP(GTP)binding protein 99.2 9.1E-12 3.1E-16 112.7 4.5 24 18-41 12-35 (262)
199 2hf9_A Probable hydrogenase ni 99.2 5E-12 1.7E-16 111.7 1.6 164 18-211 36-219 (226)
200 2www_A Methylmalonic aciduria 99.1 1.1E-10 3.6E-15 112.6 10.0 140 19-211 73-274 (349)
201 2p67_A LAO/AO transport system 99.1 6.1E-11 2.1E-15 113.7 5.0 96 63-211 147-256 (341)
202 4a9a_A Ribosome-interacting GT 99.1 3.4E-10 1.2E-14 110.9 10.1 113 21-176 73-195 (376)
203 3zvr_A Dynamin-1; hydrolase, D 99.0 7.9E-10 2.7E-14 117.1 10.9 43 3-45 31-76 (772)
204 3vqt_A RF-3, peptide chain rel 99.0 6.3E-09 2.1E-13 106.3 14.7 127 19-191 30-183 (548)
205 2ohf_A Protein OLA1, GTP-bindi 98.8 6.7E-09 2.3E-13 102.5 8.4 77 17-93 19-121 (396)
206 3l82_B F-box only protein 4; T 98.8 8.4E-09 2.9E-13 94.4 8.1 155 10-207 6-214 (227)
207 2yv5_A YJEQ protein; hydrolase 98.8 1.5E-08 5.3E-13 95.6 9.8 93 75-212 66-165 (302)
208 2qm8_A GTPase/ATPase; G protei 98.8 1.9E-08 6.3E-13 96.6 9.7 24 18-41 53-76 (337)
209 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 1.4E-07 4.9E-12 92.8 14.8 77 18-94 18-121 (392)
210 4fn5_A EF-G 1, elongation fact 98.7 1.8E-07 6.2E-12 98.0 15.5 124 21-190 14-167 (709)
211 3j25_A Tetracycline resistance 98.6 1.3E-08 4.5E-13 105.5 4.0 123 22-190 4-149 (638)
212 3l2o_B F-box only protein 4; s 98.6 4.1E-08 1.4E-12 93.6 6.1 94 72-207 194-299 (312)
213 3ec1_A YQEH GTPase; atnos1, at 98.6 1.8E-08 6.1E-13 97.8 3.0 56 20-78 162-225 (369)
214 3h2y_A GTPase family protein; 98.4 6.6E-08 2.2E-12 93.9 3.2 57 19-78 159-224 (368)
215 2j37_W Signal recognition part 98.3 7.1E-06 2.4E-10 83.1 13.2 23 19-41 100-122 (504)
216 2qag_B Septin-6, protein NEDD5 98.2 8.2E-06 2.8E-10 81.2 12.3 56 21-76 43-106 (427)
217 3sop_A Neuronal-specific septi 98.1 1.4E-05 4.8E-10 74.2 11.6 24 20-43 2-25 (270)
218 1puj_A YLQF, conserved hypothe 98.1 2.8E-06 9.6E-11 79.5 6.2 60 17-77 117-177 (282)
219 3cnl_A YLQF, putative uncharac 98.1 1.8E-06 6.2E-11 80.0 3.7 56 21-78 100-157 (262)
220 3h2y_A GTPase family protein; 98.0 4.8E-06 1.6E-10 80.7 5.6 89 74-210 55-154 (368)
221 3ec1_A YQEH GTPase; atnos1, at 97.9 7.3E-06 2.5E-10 79.4 4.3 89 74-210 57-156 (369)
222 1tq4_A IIGP1, interferon-induc 97.8 0.00011 3.9E-09 72.5 10.7 25 19-43 68-92 (413)
223 1puj_A YLQF, conserved hypothe 97.7 3.3E-05 1.1E-09 72.2 5.8 91 69-207 3-97 (282)
224 2v3c_C SRP54, signal recogniti 97.7 5.3E-05 1.8E-09 75.2 7.3 23 20-42 99-121 (432)
225 1f5n_A Interferon-induced guan 97.6 5E-05 1.7E-09 78.4 6.4 69 8-77 27-103 (592)
226 3dm5_A SRP54, signal recogniti 97.6 0.00058 2E-08 68.2 13.2 57 135-198 218-275 (443)
227 1bif_A 6-phosphofructo-2-kinas 97.5 2.7E-05 9.4E-10 77.3 2.1 78 15-93 34-125 (469)
228 1j8m_F SRP54, signal recogniti 97.3 0.0014 4.6E-08 61.7 11.1 55 135-197 218-274 (297)
229 3kl4_A SRP54, signal recogniti 97.3 0.0008 2.7E-08 66.9 9.4 57 135-198 217-274 (433)
230 3szr_A Interferon-induced GTP- 97.2 0.00068 2.3E-08 69.8 7.7 23 22-44 47-69 (608)
231 3cnl_A YLQF, putative uncharac 97.1 0.00039 1.3E-08 64.2 4.5 69 135-213 27-98 (262)
232 3e70_C DPA, signal recognition 96.9 0.0014 4.9E-08 62.6 6.6 24 19-42 128-151 (328)
233 4dzz_A Plasmid partitioning pr 96.8 0.013 4.3E-07 50.1 11.5 57 135-193 103-162 (206)
234 3end_A Light-independent proto 96.8 0.021 7.1E-07 52.6 13.6 76 128-206 178-254 (307)
235 1t9h_A YLOQ, probable GTPase E 96.7 0.0014 4.9E-08 62.1 5.3 76 131-209 88-170 (307)
236 1rj9_A FTSY, signal recognitio 96.6 0.0019 6.5E-08 61.0 5.6 23 20-42 102-124 (304)
237 3q5d_A Atlastin-1; G protein, 96.6 0.0021 7.1E-08 64.2 5.6 60 19-78 66-153 (447)
238 2xxa_A Signal recognition part 96.6 0.022 7.5E-07 56.4 12.8 22 20-41 100-121 (433)
239 2yhs_A FTSY, cell division pro 96.3 0.005 1.7E-07 62.3 6.2 24 19-42 292-315 (503)
240 3c8u_A Fructokinase; YP_612366 96.2 0.0035 1.2E-07 54.7 4.3 38 4-42 7-44 (208)
241 1ye8_A Protein THEP1, hypothet 96.1 0.0028 9.5E-08 55.0 3.2 23 21-43 1-23 (178)
242 3ec2_A DNA replication protein 96.1 0.0047 1.6E-07 52.3 4.4 38 6-43 24-61 (180)
243 1kgd_A CASK, peripheral plasma 96.0 0.0031 1.1E-07 53.9 3.0 22 22-43 7-28 (180)
244 1vma_A Cell division protein F 96.0 0.0072 2.5E-07 57.1 5.6 58 134-198 227-285 (306)
245 1zu4_A FTSY; GTPase, signal re 96.0 0.025 8.6E-07 53.6 9.3 23 20-42 105-127 (320)
246 1zp6_A Hypothetical protein AT 95.9 0.0055 1.9E-07 52.0 3.8 25 19-43 8-32 (191)
247 1lvg_A Guanylate kinase, GMP k 95.8 0.0041 1.4E-07 54.2 3.0 22 21-42 5-26 (198)
248 3tr0_A Guanylate kinase, GMP k 95.8 0.0046 1.6E-07 52.9 3.0 23 21-43 8-30 (205)
249 1rz3_A Hypothetical protein rb 95.7 0.013 4.5E-07 50.9 5.6 39 4-42 6-44 (201)
250 3a00_A Guanylate kinase, GMP k 95.6 0.0055 1.9E-07 52.5 2.9 21 23-43 4-24 (186)
251 3lw7_A Adenylate kinase relate 95.6 0.0069 2.4E-07 49.6 3.2 20 21-40 2-21 (179)
252 2bbw_A Adenylate kinase 4, AK4 95.6 0.0076 2.6E-07 53.9 3.6 23 19-41 26-48 (246)
253 1jbk_A CLPB protein; beta barr 95.5 0.013 4.5E-07 48.2 4.8 25 19-43 42-66 (195)
254 1aky_A Adenylate kinase; ATP:A 95.5 0.0075 2.6E-07 52.8 3.4 25 18-42 2-26 (220)
255 4gp7_A Metallophosphoesterase; 95.5 0.006 2E-07 51.9 2.6 21 21-41 10-30 (171)
256 1znw_A Guanylate kinase, GMP k 95.5 0.0067 2.3E-07 52.9 2.9 23 21-43 21-43 (207)
257 2ffh_A Protein (FFH); SRP54, s 95.5 0.021 7.3E-07 56.5 6.8 23 20-42 98-120 (425)
258 3kb2_A SPBC2 prophage-derived 95.4 0.0077 2.6E-07 49.7 2.9 21 22-42 3-23 (173)
259 3tau_A Guanylate kinase, GMP k 95.4 0.0078 2.7E-07 52.7 3.0 26 19-44 7-32 (208)
260 1ly1_A Polynucleotide kinase; 95.4 0.0099 3.4E-07 49.5 3.5 22 21-42 3-24 (181)
261 1z6g_A Guanylate kinase; struc 95.4 0.0077 2.6E-07 53.3 2.9 25 20-44 23-47 (218)
262 1kag_A SKI, shikimate kinase I 95.3 0.0085 2.9E-07 49.9 3.0 23 21-43 5-27 (173)
263 2j41_A Guanylate kinase; GMP, 95.3 0.0099 3.4E-07 50.8 3.4 26 19-44 5-30 (207)
264 1s96_A Guanylate kinase, GMP k 95.3 0.0081 2.8E-07 53.8 3.0 25 20-44 16-40 (219)
265 2qor_A Guanylate kinase; phosp 95.3 0.0084 2.9E-07 52.0 3.0 24 20-43 12-35 (204)
266 3asz_A Uridine kinase; cytidin 95.3 0.01 3.5E-07 51.3 3.4 25 18-42 4-28 (211)
267 3fb4_A Adenylate kinase; psych 95.3 0.0094 3.2E-07 51.7 3.2 22 21-42 1-22 (216)
268 3dl0_A Adenylate kinase; phosp 95.2 0.01 3.5E-07 51.6 3.2 22 21-42 1-22 (216)
269 3ney_A 55 kDa erythrocyte memb 95.2 0.0093 3.2E-07 53.1 3.0 23 21-43 20-42 (197)
270 2bdt_A BH3686; alpha-beta prot 95.2 0.0095 3.2E-07 50.7 2.9 21 22-42 4-24 (189)
271 3cwq_A Para family chromosome 95.2 0.093 3.2E-06 45.9 9.4 55 135-193 96-153 (209)
272 2rhm_A Putative kinase; P-loop 95.2 0.012 4.2E-07 49.6 3.6 24 19-42 4-27 (193)
273 3cm0_A Adenylate kinase; ATP-b 95.2 0.013 4.4E-07 49.4 3.6 24 19-42 3-26 (186)
274 2jaq_A Deoxyguanosine kinase; 95.2 0.011 3.8E-07 50.2 3.2 22 21-42 1-22 (205)
275 1ex7_A Guanylate kinase; subst 95.2 0.011 3.6E-07 52.1 3.1 21 23-43 4-24 (186)
276 1kht_A Adenylate kinase; phosp 95.1 0.012 4E-07 49.5 3.3 23 20-42 3-25 (192)
277 1cke_A CK, MSSA, protein (cyti 95.1 0.013 4.4E-07 51.0 3.5 23 20-42 5-27 (227)
278 2cdn_A Adenylate kinase; phosp 95.1 0.014 4.9E-07 50.1 3.7 27 16-42 16-42 (201)
279 1nks_A Adenylate kinase; therm 95.0 0.013 4.4E-07 49.2 3.3 21 22-42 3-23 (194)
280 1qhx_A CPT, protein (chloramph 95.0 0.012 4E-07 49.3 3.0 23 21-43 4-26 (178)
281 2plr_A DTMP kinase, probable t 94.9 0.016 5.4E-07 49.5 3.6 23 20-42 4-26 (213)
282 4eun_A Thermoresistant glucoki 94.9 0.015 5E-07 50.3 3.4 24 19-42 28-51 (200)
283 1knq_A Gluconate kinase; ALFA/ 94.9 0.017 5.9E-07 48.3 3.7 23 20-42 8-30 (175)
284 2p65_A Hypothetical protein PF 94.9 0.019 6.6E-07 47.3 3.9 25 18-42 41-65 (187)
285 3t61_A Gluconokinase; PSI-biol 94.9 0.013 4.5E-07 50.4 2.9 24 20-43 18-41 (202)
286 2ehv_A Hypothetical protein PH 94.9 0.014 4.8E-07 51.1 3.1 22 21-42 31-52 (251)
287 2if2_A Dephospho-COA kinase; a 94.9 0.014 4.9E-07 50.0 3.1 22 21-42 2-23 (204)
288 1htw_A HI0065; nucleotide-bind 94.8 0.014 4.8E-07 49.7 2.9 27 18-44 31-57 (158)
289 1tev_A UMP-CMP kinase; ploop, 94.8 0.017 5.8E-07 48.5 3.5 23 20-42 3-25 (196)
290 3tlx_A Adenylate kinase 2; str 94.8 0.017 5.9E-07 51.9 3.7 25 18-42 27-51 (243)
291 4a74_A DNA repair and recombin 94.8 0.014 4.6E-07 50.6 2.8 24 20-43 25-48 (231)
292 1y63_A LMAJ004144AAA protein; 94.8 0.019 6.6E-07 49.0 3.7 26 18-43 8-33 (184)
293 1e4v_A Adenylate kinase; trans 94.8 0.015 5.2E-07 50.7 3.1 22 21-42 1-22 (214)
294 3vaa_A Shikimate kinase, SK; s 94.8 0.017 5.8E-07 49.9 3.4 24 19-42 24-47 (199)
295 3tif_A Uncharacterized ABC tra 94.8 0.014 4.8E-07 52.6 2.9 22 22-43 33-54 (235)
296 2v54_A DTMP kinase, thymidylat 94.8 0.018 6.2E-07 49.1 3.5 25 19-43 3-27 (204)
297 2rcn_A Probable GTPase ENGC; Y 94.7 0.066 2.3E-06 51.8 7.7 79 127-210 128-213 (358)
298 2c95_A Adenylate kinase 1; tra 94.7 0.018 6.3E-07 48.6 3.4 24 19-42 8-31 (196)
299 3n70_A Transport activator; si 94.7 0.23 8E-06 40.6 10.1 38 6-44 11-48 (145)
300 2rcn_A Probable GTPase ENGC; Y 94.7 0.016 5.3E-07 56.2 3.2 24 21-44 216-239 (358)
301 2pcj_A ABC transporter, lipopr 94.7 0.015 5.2E-07 52.0 2.9 22 22-43 32-53 (224)
302 3sr0_A Adenylate kinase; phosp 94.7 0.017 5.8E-07 51.3 3.2 22 21-42 1-22 (206)
303 1tue_A Replication protein E1; 94.7 0.022 7.5E-07 51.6 3.9 38 3-42 43-80 (212)
304 1zd8_A GTP:AMP phosphotransfer 94.7 0.018 6.3E-07 50.6 3.4 24 19-42 6-29 (227)
305 2pt5_A Shikimate kinase, SK; a 94.6 0.019 6.5E-07 47.5 3.2 22 21-42 1-22 (168)
306 3trf_A Shikimate kinase, SK; a 94.6 0.019 6.4E-07 48.4 3.2 23 20-42 5-27 (185)
307 1nn5_A Similar to deoxythymidy 94.6 0.021 7.2E-07 49.0 3.5 25 18-42 7-31 (215)
308 3uie_A Adenylyl-sulfate kinase 94.6 0.023 7.7E-07 49.1 3.6 25 18-42 23-47 (200)
309 2onk_A Molybdate/tungstate ABC 94.6 0.019 6.4E-07 52.2 3.2 22 22-43 26-47 (240)
310 2qt1_A Nicotinamide riboside k 94.5 0.024 8.3E-07 48.9 3.8 26 18-43 19-44 (207)
311 2wwf_A Thymidilate kinase, put 94.5 0.021 7.1E-07 49.0 3.3 24 19-42 9-32 (212)
312 1jjv_A Dephospho-COA kinase; P 94.5 0.023 7.9E-07 48.9 3.5 22 21-42 3-24 (206)
313 1gvn_B Zeta; postsegregational 94.5 0.046 1.6E-06 50.7 5.7 25 18-42 31-55 (287)
314 1u0l_A Probable GTPase ENGC; p 94.4 0.017 5.9E-07 53.8 2.8 24 21-44 170-193 (301)
315 1b0u_A Histidine permease; ABC 94.4 0.019 6.5E-07 52.7 3.0 22 22-43 34-55 (262)
316 2cbz_A Multidrug resistance-as 94.4 0.019 6.4E-07 51.9 2.9 22 22-43 33-54 (237)
317 1zak_A Adenylate kinase; ATP:A 94.4 0.018 6.3E-07 50.3 2.8 24 19-42 4-27 (222)
318 3lnc_A Guanylate kinase, GMP k 94.4 0.013 4.6E-07 51.6 1.8 23 21-43 28-51 (231)
319 1g6h_A High-affinity branched- 94.4 0.019 6.7E-07 52.3 2.9 22 22-43 35-56 (257)
320 2i3b_A HCR-ntpase, human cance 94.4 0.019 6.3E-07 50.3 2.6 21 22-42 3-23 (189)
321 1mv5_A LMRA, multidrug resista 94.4 0.022 7.6E-07 51.5 3.2 23 21-43 29-51 (243)
322 2yvu_A Probable adenylyl-sulfa 94.3 0.028 9.7E-07 47.6 3.7 25 18-42 11-35 (186)
323 1uf9_A TT1252 protein; P-loop, 94.3 0.027 9.2E-07 47.9 3.6 26 18-43 6-31 (203)
324 1sgw_A Putative ABC transporte 94.3 0.021 7.3E-07 51.0 3.0 22 22-43 37-58 (214)
325 1odf_A YGR205W, hypothetical 3 94.3 0.049 1.7E-06 50.8 5.5 26 17-42 28-53 (290)
326 2eyu_A Twitching motility prot 94.3 0.021 7.2E-07 52.4 3.0 25 18-42 23-47 (261)
327 3gfo_A Cobalt import ATP-bindi 94.3 0.021 7.2E-07 53.0 3.0 22 22-43 36-57 (275)
328 2pbr_A DTMP kinase, thymidylat 94.3 0.024 8.3E-07 47.6 3.1 21 22-42 2-22 (195)
329 2pze_A Cystic fibrosis transme 94.3 0.022 7.5E-07 51.1 3.0 22 22-43 36-57 (229)
330 2yv5_A YJEQ protein; hydrolase 94.3 0.022 7.5E-07 53.2 3.1 21 21-41 166-186 (302)
331 2ff7_A Alpha-hemolysin translo 94.3 0.024 8.1E-07 51.6 3.2 22 22-43 37-58 (247)
332 2d2e_A SUFC protein; ABC-ATPas 94.3 0.023 8E-07 51.6 3.2 22 22-43 31-52 (250)
333 1np6_A Molybdopterin-guanine d 94.2 0.023 7.9E-07 49.2 3.0 23 21-43 7-29 (174)
334 1ji0_A ABC transporter; ATP bi 94.2 0.022 7.5E-07 51.5 2.9 22 22-43 34-55 (240)
335 2p5t_B PEZT; postsegregational 94.2 0.039 1.3E-06 49.7 4.6 26 18-43 30-55 (253)
336 4g1u_C Hemin import ATP-bindin 94.2 0.022 7.6E-07 52.5 3.0 22 22-43 39-60 (266)
337 3be4_A Adenylate kinase; malar 94.2 0.025 8.5E-07 49.6 3.2 24 19-42 4-27 (217)
338 1ukz_A Uridylate kinase; trans 94.2 0.034 1.1E-06 47.7 3.9 25 18-42 13-37 (203)
339 1via_A Shikimate kinase; struc 94.2 0.022 7.4E-07 47.9 2.6 21 22-42 6-26 (175)
340 2chg_A Replication factor C sm 94.2 0.051 1.8E-06 45.7 5.0 21 22-42 40-60 (226)
341 3tqc_A Pantothenate kinase; bi 94.2 0.051 1.8E-06 51.7 5.4 26 17-42 89-114 (321)
342 2bwj_A Adenylate kinase 5; pho 94.2 0.021 7.2E-07 48.4 2.5 23 20-42 12-34 (199)
343 2jeo_A Uridine-cytidine kinase 94.2 0.03 1E-06 50.0 3.6 25 18-42 23-47 (245)
344 2olj_A Amino acid ABC transpor 94.2 0.024 8.1E-07 52.3 3.0 22 22-43 52-73 (263)
345 2zu0_C Probable ATP-dependent 94.1 0.026 8.8E-07 51.9 3.2 22 22-43 48-69 (267)
346 2qi9_C Vitamin B12 import ATP- 94.1 0.024 8.3E-07 51.8 3.0 22 22-43 28-49 (249)
347 3bos_A Putative DNA replicatio 94.1 0.035 1.2E-06 47.9 3.8 24 19-42 51-74 (242)
348 2w0m_A SSO2452; RECA, SSPF, un 94.1 0.025 8.6E-07 48.6 2.9 22 21-42 24-45 (235)
349 1vpl_A ABC transporter, ATP-bi 94.1 0.025 8.5E-07 51.9 3.0 22 22-43 43-64 (256)
350 2xb4_A Adenylate kinase; ATP-b 94.1 0.029 1E-06 49.5 3.4 22 21-42 1-22 (223)
351 1t9h_A YLOQ, probable GTPase E 94.1 0.009 3.1E-07 56.6 -0.0 25 20-44 173-197 (307)
352 3iij_A Coilin-interacting nucl 94.0 0.027 9.2E-07 47.4 2.9 23 20-42 11-33 (180)
353 2ixe_A Antigen peptide transpo 94.0 0.025 8.6E-07 52.2 2.9 22 22-43 47-68 (271)
354 2ghi_A Transport protein; mult 94.0 0.028 9.4E-07 51.5 3.2 22 22-43 48-69 (260)
355 2z0h_A DTMP kinase, thymidylat 94.0 0.03 1E-06 47.4 3.2 21 22-42 2-22 (197)
356 3b85_A Phosphate starvation-in 94.0 0.021 7.3E-07 50.7 2.3 22 22-43 24-45 (208)
357 1ak2_A Adenylate kinase isoenz 94.0 0.032 1.1E-06 49.4 3.5 26 17-42 13-38 (233)
358 2v9p_A Replication protein E1; 94.0 0.027 9.2E-07 53.3 3.1 25 18-42 124-148 (305)
359 1qf9_A UMP/CMP kinase, protein 94.0 0.035 1.2E-06 46.5 3.5 23 20-42 6-28 (194)
360 1ixz_A ATP-dependent metallopr 94.0 0.027 9.3E-07 50.2 3.0 22 22-43 51-72 (254)
361 2nq2_C Hypothetical ABC transp 94.0 0.027 9.2E-07 51.5 2.9 22 22-43 33-54 (253)
362 2vli_A Antibiotic resistance p 94.0 0.023 7.8E-07 47.6 2.3 24 19-42 4-27 (183)
363 2w58_A DNAI, primosome compone 93.9 0.064 2.2E-06 45.8 5.2 22 21-42 55-76 (202)
364 2yz2_A Putative ABC transporte 93.9 0.028 9.4E-07 51.7 2.9 22 22-43 35-56 (266)
365 3aez_A Pantothenate kinase; tr 93.9 0.034 1.2E-06 52.4 3.7 25 18-42 88-112 (312)
366 1lw7_A Transcriptional regulat 93.9 0.024 8.3E-07 53.9 2.6 24 20-43 170-193 (365)
367 2ihy_A ABC transporter, ATP-bi 93.9 0.03 1E-06 52.0 3.2 22 22-43 49-70 (279)
368 1vht_A Dephospho-COA kinase; s 93.9 0.039 1.3E-06 48.0 3.7 24 19-42 3-26 (218)
369 2pez_A Bifunctional 3'-phospho 93.8 0.04 1.4E-06 46.4 3.6 24 19-42 4-27 (179)
370 3a4m_A L-seryl-tRNA(SEC) kinas 93.8 0.04 1.4E-06 49.9 3.7 23 20-42 4-26 (260)
371 2x8a_A Nuclear valosin-contain 93.8 0.03 1E-06 51.5 2.9 21 23-43 47-67 (274)
372 1gtv_A TMK, thymidylate kinase 93.7 0.014 4.8E-07 50.2 0.5 21 22-42 2-22 (214)
373 1e6c_A Shikimate kinase; phosp 93.7 0.036 1.2E-06 45.9 3.0 21 22-42 4-24 (173)
374 3fwy_A Light-independent proto 93.7 0.67 2.3E-05 43.6 12.1 73 131-206 188-261 (314)
375 2pjz_A Hypothetical protein ST 93.6 0.037 1.3E-06 51.0 3.2 23 22-44 32-54 (263)
376 1njg_A DNA polymerase III subu 93.6 0.079 2.7E-06 44.9 5.1 21 22-42 47-67 (250)
377 2cvh_A DNA repair and recombin 93.6 0.036 1.2E-06 47.6 2.9 23 20-42 20-42 (220)
378 2qz4_A Paraplegin; AAA+, SPG7, 93.5 0.077 2.6E-06 46.8 5.1 23 20-42 39-61 (262)
379 2f1r_A Molybdopterin-guanine d 93.5 0.02 6.7E-07 49.5 1.1 21 22-42 4-24 (171)
380 2iyv_A Shikimate kinase, SK; t 93.5 0.039 1.3E-06 46.5 2.9 21 22-42 4-24 (184)
381 2kjq_A DNAA-related protein; s 93.5 0.029 9.8E-07 47.0 2.1 24 20-43 36-59 (149)
382 4e22_A Cytidylate kinase; P-lo 93.5 0.047 1.6E-06 49.3 3.6 24 18-41 25-48 (252)
383 3jvv_A Twitching mobility prot 93.4 0.038 1.3E-06 53.2 3.1 23 20-42 123-145 (356)
384 2ze6_A Isopentenyl transferase 93.4 0.039 1.3E-06 50.0 3.0 21 22-42 3-23 (253)
385 1n0w_A DNA repair protein RAD5 93.4 0.041 1.4E-06 48.0 3.0 25 19-43 23-47 (243)
386 1cr0_A DNA primase/helicase; R 93.4 0.037 1.3E-06 50.6 2.8 23 21-43 36-58 (296)
387 1iy2_A ATP-dependent metallopr 93.3 0.041 1.4E-06 49.9 3.0 22 22-43 75-96 (278)
388 1sq5_A Pantothenate kinase; P- 93.3 0.049 1.7E-06 50.8 3.6 25 18-42 78-102 (308)
389 3h4m_A Proteasome-activating n 93.2 0.065 2.2E-06 48.2 4.1 26 18-43 49-74 (285)
390 2ewv_A Twitching motility prot 93.2 0.06 2.1E-06 51.9 4.1 25 18-42 134-158 (372)
391 2bbs_A Cystic fibrosis transme 93.2 0.045 1.5E-06 51.2 3.1 22 22-43 66-87 (290)
392 1lv7_A FTSH; alpha/beta domain 93.2 0.045 1.6E-06 48.8 3.0 23 20-42 45-67 (257)
393 1m7g_A Adenylylsulfate kinase; 93.1 0.06 2.1E-06 46.8 3.7 25 18-42 23-47 (211)
394 1zuh_A Shikimate kinase; alpha 93.1 0.054 1.8E-06 45.0 3.2 21 22-42 9-29 (168)
395 3fvq_A Fe(3+) IONS import ATP- 93.1 0.045 1.5E-06 53.0 3.1 23 22-44 32-54 (359)
396 1in4_A RUVB, holliday junction 93.1 0.044 1.5E-06 51.5 2.9 22 22-43 53-74 (334)
397 2ga8_A Hypothetical 39.9 kDa p 93.0 0.11 3.7E-06 50.4 5.6 39 4-42 7-46 (359)
398 2gza_A Type IV secretion syste 93.0 0.046 1.6E-06 52.4 3.0 25 19-43 174-198 (361)
399 1fnn_A CDC6P, cell division co 93.0 0.052 1.8E-06 50.6 3.3 22 22-43 46-67 (389)
400 3kta_A Chromosome segregation 93.0 0.053 1.8E-06 45.5 3.1 21 22-42 28-48 (182)
401 1d2n_A N-ethylmaleimide-sensit 93.0 0.11 3.7E-06 46.8 5.3 27 17-43 61-87 (272)
402 1z47_A CYSA, putative ABC-tran 93.0 0.049 1.7E-06 52.6 3.2 23 22-44 43-65 (355)
403 3b9q_A Chloroplast SRP recepto 93.0 0.048 1.6E-06 51.2 3.0 23 20-42 100-122 (302)
404 2yyz_A Sugar ABC transporter, 92.9 0.051 1.7E-06 52.5 3.2 22 22-43 31-52 (359)
405 3nh6_A ATP-binding cassette SU 92.9 0.034 1.2E-06 52.5 1.9 23 21-43 81-103 (306)
406 2it1_A 362AA long hypothetical 92.9 0.053 1.8E-06 52.5 3.2 23 22-44 31-53 (362)
407 3syl_A Protein CBBX; photosynt 92.9 0.12 3.9E-06 47.1 5.3 25 18-42 65-89 (309)
408 2oap_1 GSPE-2, type II secreti 92.9 0.058 2E-06 54.4 3.6 24 20-43 260-283 (511)
409 1p9r_A General secretion pathw 92.8 0.075 2.6E-06 52.3 4.2 26 18-43 165-190 (418)
410 1g29_1 MALK, maltose transport 92.8 0.054 1.9E-06 52.5 3.2 23 22-44 31-53 (372)
411 4eaq_A DTMP kinase, thymidylat 92.8 0.07 2.4E-06 47.7 3.7 24 19-42 25-48 (229)
412 1xjc_A MOBB protein homolog; s 92.8 0.064 2.2E-06 46.5 3.3 22 21-42 5-26 (169)
413 2vp4_A Deoxynucleoside kinase; 92.8 0.051 1.8E-06 48.1 2.8 26 18-43 18-43 (230)
414 3rlf_A Maltose/maltodextrin im 92.8 0.056 1.9E-06 52.8 3.2 23 22-44 31-53 (381)
415 3umf_A Adenylate kinase; rossm 92.8 0.057 2E-06 48.5 3.0 20 23-42 32-51 (217)
416 1v43_A Sugar-binding transport 92.7 0.057 2E-06 52.4 3.2 22 22-43 39-60 (372)
417 2pt7_A CAG-ALFA; ATPase, prote 92.7 0.047 1.6E-06 51.7 2.6 24 20-43 171-194 (330)
418 4ido_A Atlastin-1; GTPase, GTP 92.7 0.17 5.7E-06 50.7 6.5 60 19-78 65-153 (457)
419 1q3t_A Cytidylate kinase; nucl 92.7 0.069 2.3E-06 47.3 3.4 26 17-42 13-38 (236)
420 3tui_C Methionine import ATP-b 92.7 0.059 2E-06 52.3 3.2 22 22-43 56-77 (366)
421 1uj2_A Uridine-cytidine kinase 92.7 0.071 2.4E-06 47.8 3.5 26 17-42 19-44 (252)
422 1ltq_A Polynucleotide kinase; 92.5 0.066 2.3E-06 48.8 3.1 22 21-42 3-24 (301)
423 3r20_A Cytidylate kinase; stru 92.4 0.074 2.5E-06 48.4 3.3 25 18-42 7-31 (233)
424 2f6r_A COA synthase, bifunctio 92.4 0.08 2.7E-06 48.7 3.6 25 18-42 73-97 (281)
425 3b9p_A CG5977-PA, isoform A; A 92.4 0.064 2.2E-06 48.7 2.8 24 20-43 54-77 (297)
426 3co5_A Putative two-component 92.4 0.26 8.9E-06 40.2 6.3 25 19-43 26-50 (143)
427 1nij_A Hypothetical protein YJ 92.2 0.054 1.8E-06 50.8 2.3 22 23-44 7-28 (318)
428 3d31_A Sulfate/molybdate ABC t 92.2 0.048 1.7E-06 52.4 1.9 23 22-44 28-50 (348)
429 1sxj_E Activator 1 40 kDa subu 92.2 0.097 3.3E-06 48.5 4.0 21 22-42 38-58 (354)
430 2dr3_A UPF0273 protein PH0284; 92.2 0.077 2.6E-06 46.2 3.1 22 21-42 24-45 (247)
431 3gd7_A Fusion complex of cysti 92.1 0.072 2.5E-06 52.0 3.1 21 22-42 49-69 (390)
432 2qby_A CDC6 homolog 1, cell di 92.1 0.071 2.4E-06 49.2 2.9 23 20-42 45-67 (386)
433 2qgz_A Helicase loader, putati 92.1 0.17 5.9E-06 47.2 5.5 36 7-42 139-174 (308)
434 1svm_A Large T antigen; AAA+ f 92.1 0.16 5.6E-06 49.3 5.5 24 19-42 168-191 (377)
435 3cf0_A Transitional endoplasmi 92.0 0.12 4E-06 47.8 4.1 25 19-43 48-72 (301)
436 1nlf_A Regulatory protein REPA 91.9 0.077 2.6E-06 48.2 2.8 22 21-42 31-52 (279)
437 1u0j_A DNA replication protein 91.9 0.18 6E-06 47.0 5.3 35 7-42 92-126 (267)
438 3t15_A Ribulose bisphosphate c 91.9 0.09 3.1E-06 48.5 3.3 24 19-42 35-58 (293)
439 2og2_A Putative signal recogni 91.8 0.08 2.7E-06 51.1 3.0 23 20-42 157-179 (359)
440 1ofh_A ATP-dependent HSL prote 91.8 0.086 3E-06 47.5 3.0 23 20-42 50-72 (310)
441 1oxx_K GLCV, glucose, ABC tran 91.7 0.047 1.6E-06 52.6 1.2 23 22-44 33-55 (353)
442 1l8q_A Chromosomal replication 91.7 0.086 2.9E-06 48.7 2.9 23 20-42 37-59 (324)
443 2obl_A ESCN; ATPase, hydrolase 91.7 0.091 3.1E-06 50.3 3.1 27 18-44 69-95 (347)
444 2qby_B CDC6 homolog 3, cell di 91.6 0.15 5.3E-06 47.4 4.6 23 20-42 45-67 (384)
445 3nwj_A ATSK2; P loop, shikimat 91.5 0.093 3.2E-06 48.0 2.9 23 20-42 48-70 (250)
446 1sxj_C Activator 1 40 kDa subu 91.5 0.1 3.5E-06 48.7 3.3 22 22-43 48-69 (340)
447 2v1u_A Cell division control p 91.5 0.11 3.8E-06 48.1 3.4 36 7-42 30-66 (387)
448 3pxg_A Negative regulator of g 91.5 0.16 5.3E-06 50.3 4.7 25 18-42 199-223 (468)
449 3ake_A Cytidylate kinase; CMP 91.3 0.11 3.6E-06 44.3 2.9 21 22-42 4-24 (208)
450 1f2t_A RAD50 ABC-ATPase; DNA d 91.3 0.11 3.8E-06 43.4 2.9 19 23-41 26-44 (149)
451 2npi_A Protein CLP1; CLP1-PCF1 91.2 0.095 3.3E-06 52.2 2.8 25 19-43 137-161 (460)
452 2qen_A Walker-type ATPase; unk 90.9 0.12 4.1E-06 47.1 3.0 23 21-43 32-54 (350)
453 3uk6_A RUVB-like 2; hexameric 90.8 0.24 8.2E-06 46.1 5.0 22 21-42 71-92 (368)
454 3b60_A Lipid A export ATP-bind 90.8 0.12 4.1E-06 52.5 3.1 22 22-43 371-392 (582)
455 1sxj_D Activator 1 41 kDa subu 90.8 0.12 4.1E-06 47.6 2.9 22 22-43 60-81 (353)
456 4fcw_A Chaperone protein CLPB; 90.8 0.16 5.4E-06 46.1 3.7 23 21-43 48-70 (311)
457 2grj_A Dephospho-COA kinase; T 90.8 0.15 5.1E-06 44.6 3.3 25 19-43 11-35 (192)
458 4b4t_K 26S protease regulatory 90.7 0.19 6.4E-06 49.8 4.3 24 19-42 205-228 (428)
459 1yqt_A RNAse L inhibitor; ATP- 90.7 0.14 4.7E-06 51.9 3.4 24 21-44 48-71 (538)
460 3b5x_A Lipid A export ATP-bind 90.6 0.13 4.5E-06 52.1 3.3 23 21-43 370-392 (582)
461 2dpy_A FLII, flagellum-specifi 90.6 0.13 4.4E-06 50.8 3.1 27 18-44 155-181 (438)
462 2fna_A Conserved hypothetical 90.6 0.13 4.3E-06 47.0 2.8 22 22-43 32-53 (357)
463 1p5z_B DCK, deoxycytidine kina 90.6 0.1 3.5E-06 47.0 2.1 25 18-42 22-46 (263)
464 2r62_A Cell division protease 90.6 0.084 2.9E-06 47.2 1.6 22 21-42 45-66 (268)
465 1w5s_A Origin recognition comp 90.5 0.24 8.1E-06 46.5 4.7 23 20-42 50-74 (412)
466 4b4t_M 26S protease regulatory 90.5 0.2 6.8E-06 49.7 4.3 25 18-42 213-237 (434)
467 2ocp_A DGK, deoxyguanosine kin 90.4 0.17 5.8E-06 44.8 3.5 24 20-43 2-25 (241)
468 3pfi_A Holliday junction ATP-d 90.4 0.22 7.5E-06 45.9 4.3 24 20-43 55-78 (338)
469 2px0_A Flagellar biosynthesis 90.3 0.17 5.8E-06 47.2 3.5 23 19-41 104-126 (296)
470 3eie_A Vacuolar protein sortin 90.2 0.15 5.2E-06 47.4 3.1 24 20-43 51-74 (322)
471 1xwi_A SKD1 protein; VPS4B, AA 90.2 0.14 4.8E-06 47.9 2.8 23 21-43 46-68 (322)
472 1a7j_A Phosphoribulokinase; tr 90.2 0.097 3.3E-06 48.6 1.7 25 18-42 3-27 (290)
473 3zvl_A Bifunctional polynucleo 90.2 0.19 6.5E-06 48.9 3.8 24 19-42 257-280 (416)
474 2oze_A ORF delta'; para, walke 90.1 2.7 9.1E-05 37.9 11.3 60 130-190 177-242 (298)
475 2h92_A Cytidylate kinase; ross 90.1 0.15 5.1E-06 44.1 2.7 23 20-42 3-25 (219)
476 2bjv_A PSP operon transcriptio 90.0 0.27 9.3E-06 43.8 4.5 26 19-44 28-53 (265)
477 2yl4_A ATP-binding cassette SU 90.0 0.12 4.2E-06 52.5 2.4 22 22-43 372-393 (595)
478 3te6_A Regulatory protein SIR3 89.9 0.18 6.3E-06 47.8 3.4 26 17-42 42-67 (318)
479 3euj_A Chromosome partition pr 89.9 0.15 5.2E-06 51.2 3.0 22 21-42 30-51 (483)
480 3ozx_A RNAse L inhibitor; ATP 89.9 0.15 5.2E-06 51.6 3.0 24 21-44 26-49 (538)
481 3qf7_A RAD50; ABC-ATPase, ATPa 89.8 0.17 5.8E-06 48.4 3.1 22 19-41 23-44 (365)
482 2r8r_A Sensor protein; KDPD, P 89.6 0.24 8.1E-06 45.2 3.8 24 18-41 4-27 (228)
483 3j16_B RLI1P; ribosome recycli 89.6 0.17 5.9E-06 52.1 3.2 23 22-44 105-127 (608)
484 3qf4_B Uncharacterized ABC tra 89.6 0.14 4.9E-06 52.2 2.6 23 21-43 382-404 (598)
485 1pzn_A RAD51, DNA repair and r 89.6 0.16 5.6E-06 48.3 2.8 25 19-43 130-154 (349)
486 2chq_A Replication factor C sm 89.5 0.31 1E-05 43.9 4.4 22 22-43 40-61 (319)
487 4b4t_L 26S protease subunit RP 89.4 0.27 9.3E-06 48.7 4.3 25 18-42 213-237 (437)
488 3cr8_A Sulfate adenylyltranfer 89.4 0.2 6.8E-06 51.1 3.4 26 18-43 367-392 (552)
489 1iqp_A RFCS; clamp loader, ext 89.4 0.42 1.4E-05 43.2 5.3 22 22-43 48-69 (327)
490 1um8_A ATP-dependent CLP prote 89.3 0.19 6.4E-06 47.6 3.0 24 19-42 71-94 (376)
491 3u61_B DNA polymerase accessor 89.2 0.82 2.8E-05 41.8 7.2 21 23-43 51-71 (324)
492 2qmh_A HPR kinase/phosphorylas 89.2 0.21 7.3E-06 44.9 3.0 25 20-44 34-58 (205)
493 2zts_A Putative uncharacterize 89.1 0.22 7.6E-06 43.2 3.1 22 21-42 31-52 (251)
494 3hws_A ATP-dependent CLP prote 89.1 0.2 6.8E-06 47.2 3.0 24 19-42 50-73 (363)
495 4a82_A Cystic fibrosis transme 89.0 0.13 4.3E-06 52.3 1.6 21 22-42 369-389 (578)
496 1sxj_B Activator 1 37 kDa subu 89.0 0.44 1.5E-05 42.9 5.2 22 22-43 44-65 (323)
497 2a5y_B CED-4; apoptosis; HET: 89.0 0.43 1.5E-05 47.7 5.5 38 5-42 137-174 (549)
498 3bk7_A ABC transporter ATP-bin 89.0 0.21 7.1E-06 51.4 3.2 21 22-42 119-139 (607)
499 1yqt_A RNAse L inhibitor; ATP- 88.9 0.23 7.8E-06 50.2 3.4 23 22-44 314-336 (538)
500 1ko7_A HPR kinase/phosphatase; 88.9 0.39 1.3E-05 45.6 4.9 42 3-44 116-168 (314)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.97 E-value=1.3e-31 Score=242.96 Aligned_cols=151 Identities=19% Similarity=0.354 Sum_probs=125.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.+++||+|+|++|||||||+++|..+.|...+.||+|.++.. +++..++++||||+|+++|+.+++.|++++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 367999999999999999999999999999999999977643 4677899999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||+++++||+++..|+..+.+.. ..++|++|||||+
T Consensus 91 -----------------------------------------lv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~ 128 (216)
T 4dkx_A 91 -----------------------------------------VVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKT 128 (216)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECT
T ss_pred -----------------------------------------EEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecc
Confidence 9999999999999999999987643 3679999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .++++++++++++|+||||+++.+++++++.+
T Consensus 129 Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred chHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence 99764 67899999999999999999977777766555
No 2
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=3.8e-28 Score=208.71 Aligned_cols=165 Identities=25% Similarity=0.502 Sum_probs=131.6
Q ss_pred ChHHHHHHHHHHHhcCC-CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCcccc
Q psy2970 1 MFVLLNRILDWFKSLFW-KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~-~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~ 79 (329)
|||+++ ++++++. ++.+||+++|++|||||||++++.+++ ...+.||++.....+..+...+.+|||||+++++
T Consensus 2 ~mg~~~----~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 76 (186)
T 1ksh_A 2 SMGLLT----ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 76 (186)
T ss_dssp -------------------CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHH
T ss_pred ccchhH----HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEECCEEEEEEECCCCHhHH
Confidence 666554 4555565 789999999999999999999999988 6678899998887777788999999999999999
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
..+..+++++|+++ +|+|++++++++++..|+.++++..
T Consensus 77 ~~~~~~~~~~d~ii-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~ 115 (186)
T 1ksh_A 77 SYWRNYFESTDGLI-----------------------------------------WVVDSADRQRMQDCQRELQSLLVEE 115 (186)
T ss_dssp TTGGGGCTTCSEEE-----------------------------------------EEEETTCGGGHHHHHHHHHHHHTCG
T ss_pred HHHHHHhcCCCEEE-----------------------------------------EEEECcCHHHHHHHHHHHHHHHhCh
Confidence 99999999999999 9999999999999999999998765
Q ss_pred cCCCCcEEEEEEcCCCCChhhHHHHHHHh--------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 160 QLIGIPILVLGNKRDLPNALDEKELIDRI--------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~--------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
...++|+++|+||+|+.++.+.+++.+.+ +++++++||+++.+.+++++.+.
T Consensus 116 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (186)
T 1ksh_A 116 RLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 175 (186)
T ss_dssp GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred hcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHH
Confidence 55789999999999998765555555443 35799999999777777776553
No 3
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=8.4e-28 Score=207.50 Aligned_cols=164 Identities=27% Similarity=0.445 Sum_probs=134.1
Q ss_pred ChHHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
|.+++.+++. ++.++.+||+++|++|||||||++++.++++. .+.||++.....+..++..+.+|||||+++++.
T Consensus 1 m~~~~~~~~~----~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 75 (187)
T 1zj6_A 1 MGILFTRIWR----LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRS 75 (187)
T ss_dssp -CHHHHHHHH----HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEETTEEEEEEECCC----CG
T ss_pred CchHHHHHHH----hcCCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEECCEEEEEEECCCCHhHHH
Confidence 6778888776 34578999999999999999999999998887 678898877777777789999999999999999
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
++..+++++|+++ +|||++++++|+....|+.++.+...
T Consensus 76 ~~~~~~~~~d~ii-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~ 114 (187)
T 1zj6_A 76 SWNTYYTNTEFVI-----------------------------------------VVVDSTDRERISVTREELYKMLAHED 114 (187)
T ss_dssp GGHHHHTTCCEEE-----------------------------------------EEEETTCTTTHHHHHHHHHHHHTSGG
T ss_pred HHHHHhcCCCEEE-----------------------------------------EEEeCCCHHHHHHHHHHHHHHHhchh
Confidence 9999999999999 99999999999999999999987644
Q ss_pred CCCCcEEEEEEcCCCCChhhHHHHHHH--------hCCcEEEEeccchHHHHHHhhhh
Q psy2970 161 LIGIPILVLGNKRDLPNALDEKELIDR--------IMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~e~~~l~~~--------~~~~~~etSAk~~~~~~~~l~~i 210 (329)
..++|+++|+||+|+.++.+.+++.+. .+++++++||+++.+.+++++.+
T Consensus 115 ~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (187)
T 1zj6_A 115 LRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 172 (187)
T ss_dssp GTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred hCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHH
Confidence 578999999999999875333333332 34589999999977777777655
No 4
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=6.2e-28 Score=208.26 Aligned_cols=168 Identities=26% Similarity=0.467 Sum_probs=140.1
Q ss_pred ChHHHHHHHHHHHhcCC-CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCcccc
Q psy2970 1 MFVLLNRILDWFKSLFW-KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~-~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~ 79 (329)
|++++++++.|++. |. ++++||+++|++|||||||++++.++++. .+.||++.....+..+...+.+|||||+++++
T Consensus 3 m~~~~~~~~~~l~~-f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 80 (189)
T 2x77_A 3 MGAWLASLKQTLGL-LPADRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLETLQYKNISFEVWDLGGQTGVR 80 (189)
T ss_dssp ---CCSCHHHHHHT-SCTTSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCEEEEEETTEEEEEEEECCSSSSC
T ss_pred hHHHHHHHHHHhhh-ccCCCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEEEEEEECCEEEEEEECCCCHhHH
Confidence 56677777777765 45 78999999999999999999999988875 46788888777777788999999999999999
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
..+..+++++|+++ +|+|++++++++....++.+++...
T Consensus 81 ~~~~~~~~~~d~ii-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~ 119 (189)
T 2x77_A 81 PYWRCYFSDTDAVI-----------------------------------------YVVDSTDRDRMGVAKHELYALLDED 119 (189)
T ss_dssp CCCSSSSTTCCEEE-----------------------------------------EEEETTCCTTHHHHHHHHHHHHTCS
T ss_pred HHHHHHhhcCCEEE-----------------------------------------EEEeCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999 9999999999999999999998765
Q ss_pred cCCCCcEEEEEEcCCCCChhhHHHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 160 QLIGIPILVLGNKRDLPNALDEKELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
...++|+++|+||+|+.++.+.+++.+.++ ++++++||+++.+.+++++.+.
T Consensus 120 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 179 (189)
T 2x77_A 120 ELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLV 179 (189)
T ss_dssp TTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred hcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHH
Confidence 567899999999999987655455555443 4799999999777777776553
No 5
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=2.2e-27 Score=202.62 Aligned_cols=166 Identities=27% Similarity=0.521 Sum_probs=135.5
Q ss_pred ChHHHHHHHHHHHhcCC-CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCcccc
Q psy2970 1 MFVLLNRILDWFKSLFW-KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~-~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~ 79 (329)
|.+++++++ +.++. ++++||+++|++|||||||++++.++++ ..+.||++.....+..++..+.+|||||+++++
T Consensus 1 mg~~~~~~~---~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 1 MGNIFSSMF---DKLWGSNKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp -CHHHHHHH---GGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEETTEEEEEEEEC----CC
T ss_pred CchHHHHHH---HHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEECCEEEEEEECCCCHhHH
Confidence 566766654 55666 7899999999999999999999998887 567889887777777778999999999999999
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
..+..+++++|+++ +|+|++++++++.+..|+.++.+..
T Consensus 77 ~~~~~~~~~~d~ii-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~ 115 (183)
T 1moz_A 77 PYWRCYYADTAAVI-----------------------------------------FVVDSTDKDRMSTASKELHLMLQEE 115 (183)
T ss_dssp TTGGGTTTTEEEEE-----------------------------------------EEEETTCTTTHHHHHHHHHHHTTSS
T ss_pred HHHHHHhccCCEEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHcCh
Confidence 99999999999999 9999999999999999999998765
Q ss_pred cCCCCcEEEEEEcCCCCChhhHHHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 160 QLIGIPILVLGNKRDLPNALDEKELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
...++|+++|+||+|+.++.+.+++.+.++ .+++++||+++.+.+++++.+.
T Consensus 116 ~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (183)
T 1moz_A 116 ELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 175 (183)
T ss_dssp TTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred hhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 557899999999999987655555555543 3699999999877777776553
No 6
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.95 E-value=3.6e-27 Score=205.81 Aligned_cols=167 Identities=28% Similarity=0.569 Sum_probs=128.4
Q ss_pred ChHHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
||+++.++++.+. +..+++||+++|++|||||||++++.++.+. .+.||++.....+..+++.+.+|||||+++++.
T Consensus 6 ~~~~~~~~l~~~~--~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 82 (190)
T 1m2o_B 6 IFGWFRDVLASLG--LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARR 82 (190)
T ss_dssp --------------------CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTT
T ss_pred HHHHHHHHHHHhh--ccCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEEEEECCEEEEEEECCCCHHHHH
Confidence 5666666665443 3467899999999999999999999998875 567888887777776779999999999999999
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
++..+++++|+++ +|||++++++|++...|+.++.+...
T Consensus 83 ~~~~~~~~~d~~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~ 121 (190)
T 1m2o_B 83 LWKDYFPEVNGIV-----------------------------------------FLVDAADPERFDEARVELDALFNIAE 121 (190)
T ss_dssp SGGGGCTTCCEEE-----------------------------------------EEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred HHHHHHhcCCEEE-----------------------------------------EEEECCChHHHHHHHHHHHHHHcchh
Confidence 9999999999999 99999999999999999999987655
Q ss_pred CCCCcEEEEEEcCCCCChhhHHHHHHHh---------------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 161 LIGIPILVLGNKRDLPNALDEKELIDRI---------------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~e~~~l~~~~---------------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
..++|+++|+||+|+.++...+++.+.+ +++++++||+++.+.+++++.+.
T Consensus 122 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 122 LKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp GTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred hcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHH
Confidence 5789999999999998754444444443 35799999999888888776553
No 7
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.95 E-value=5.3e-27 Score=200.28 Aligned_cols=153 Identities=18% Similarity=0.295 Sum_probs=132.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i- 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI- 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE-
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE-
Confidence 467999999999999999999999988888888998877643 4566689999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++++.+..|+.++.+.....++|+++|+||+|
T Consensus 83 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 122 (181)
T 3t5g_A 83 ----------------------------------------LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122 (181)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTT
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 9999999999999999999988765567899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .++++++++++++++++||+++.+.+++++.+.
T Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 164 (181)
T 3t5g_A 123 LHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164 (181)
T ss_dssp CTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHH
T ss_pred chhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Confidence 9643 568889999999999999999888888776653
No 8
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.95 E-value=1.1e-26 Score=193.41 Aligned_cols=152 Identities=17% Similarity=0.306 Sum_probs=132.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+++||+++|++|||||||++++.++.+...+.+|++..+.. +++....+.+|||||++++..++..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i-- 79 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI-- 79 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE--
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE--
Confidence 46899999999999999999999999887788888765432 4566778999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++.+++.+..|+.++.+.....++|+++|+||+|+
T Consensus 80 ---------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1kao_A 80 ---------------------------------------LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120 (167)
T ss_dssp ---------------------------------------EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred ---------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence 99999999999999999998877555568999999999998
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+. .+.++++++++++++++||+++.+.+++++.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 121 ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp GGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 653 457788999999999999999888888876653
No 9
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.95 E-value=4.2e-27 Score=207.03 Aligned_cols=154 Identities=27% Similarity=0.529 Sum_probs=122.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 16 ~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+..+++||+++|++|||||||++++.++++. .+.||++.....+..+++.+.+|||||+++++.++..+++++|+++
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i-- 97 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIV-- 97 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEE--
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEE--
Confidence 4577899999999999999999999998875 5678888777777666799999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|++...|+.++++.....++|+++|+||+|+
T Consensus 98 ---------------------------------------~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 138 (198)
T 1f6b_A 98 ---------------------------------------FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR 138 (198)
T ss_dssp ---------------------------------------EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTS
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCc
Confidence 99999999999999999999987655578999999999999
Q ss_pred CCh---hhHHHHHHH-----------------hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA---LDEKELIDR-----------------IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~---~e~~~l~~~-----------------~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++ +++.++.+. .+.++++|||+++.+.+++++.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 194 (198)
T 1f6b_A 139 PEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194 (198)
T ss_dssp TTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHH
Confidence 864 333333332 235799999999888888876654
No 10
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.95 E-value=7.1e-27 Score=195.38 Aligned_cols=151 Identities=16% Similarity=0.278 Sum_probs=132.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+++||+++|++|||||||++++.++.+...+.||++..+.. ++.+.+.+.+|||||++++..++..+++++|+++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i-- 79 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA-- 79 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE--
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE--
Confidence 46899999999999999999999999888888999877654 4667889999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++++.+..|+..+.+.....++|+++|+||+|+
T Consensus 80 ---------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1c1y_A 80 ---------------------------------------LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120 (167)
T ss_dssp ---------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTC
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccc
Confidence 99999999999999999888876544568999999999999
Q ss_pred CCh-----hhHHHHHHHh-CCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRI-MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~-~~~~~etSAk~~~~~~~~l~~i 210 (329)
.++ .+++++++++ +.+++++||+++.+.+++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp GGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 653 4577888888 7999999999987778777655
No 11
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.95 E-value=7.9e-27 Score=202.30 Aligned_cols=155 Identities=74% Similarity=1.092 Sum_probs=135.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 16 ~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+.++.+||+++|++|||||||++++.++.+...+.||++..+..++.+.+.+.+|||||++++..++..+++++|+++
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii-- 95 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV-- 95 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE--
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEE--
Confidence 456789999999999999999999999999888899999999888888999999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++++.+..|+.++++.....++|+++|+||+|+
T Consensus 96 ---------------------------------------~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 136 (188)
T 1zd9_A 96 ---------------------------------------YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136 (188)
T ss_dssp ---------------------------------------EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCC
Confidence 99999999999999999999987655578999999999999
Q ss_pred CChhhHHHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNALDEKELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+..+.+++.+.++ ++++++||+++.+.+++++.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 180 (188)
T 1zd9_A 137 PGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180 (188)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred ccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHH
Confidence 87655555555543 4699999999877888776654
No 12
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.95 E-value=1.6e-26 Score=197.32 Aligned_cols=153 Identities=20% Similarity=0.315 Sum_probs=131.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
++++||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i- 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL- 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE-
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE-
Confidence 468999999999999999999999999887888888765543 4667788999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++++.+..|+..+.......++|+++|+||+|
T Consensus 81 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 120 (189)
T 4dsu_A 81 ----------------------------------------CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 120 (189)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 9999999999999999999888755567899999999999
Q ss_pred CCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .+++++++.++++++++||+++.+.+++++.+.
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 161 (189)
T 4dsu_A 121 LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161 (189)
T ss_dssp SSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9753 567889999999999999999777777776553
No 13
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.95 E-value=4.8e-27 Score=205.36 Aligned_cols=159 Identities=30% Similarity=0.585 Sum_probs=133.3
Q ss_pred HHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhcc
Q psy2970 10 DWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGV 89 (329)
Q Consensus 10 ~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~a 89 (329)
.++++++.++++||+++|++|||||||++++.++++. .+.||++.....++.+.+.+.+|||||+++++.++..+++++
T Consensus 19 ~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 97 (192)
T 2b6h_A 19 SLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNT 97 (192)
T ss_dssp CGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTC
T ss_pred HHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccC
Confidence 3566777889999999999999999999999998876 467898877777888889999999999999999999999999
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|+++ +|||++++++|+.+..|+.++.......++|+++|
T Consensus 98 d~ii-----------------------------------------lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv 136 (192)
T 2b6h_A 98 QGLI-----------------------------------------FVVDSNDRERVQESADELQKMLQEDELRDAVLLVF 136 (192)
T ss_dssp CEEE-----------------------------------------EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred CEEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEE
Confidence 9999 99999999999999999999987655678999999
Q ss_pred EEcCCCCChhhHHHHHHHhC--------CcEEEEeccchHHHHHHhhhh
Q psy2970 170 GNKRDLPNALDEKELIDRIM--------IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 170 gNK~Dl~~~~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i 210 (329)
+||+|+.+..+.+++.+.++ ++++++||+++.+.+++++.+
T Consensus 137 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 185 (192)
T 2b6h_A 137 ANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 185 (192)
T ss_dssp EECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred EECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHH
Confidence 99999988755666666655 369999999987777777655
No 14
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.95 E-value=1.3e-26 Score=198.17 Aligned_cols=153 Identities=21% Similarity=0.250 Sum_probs=133.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 3467999999999999999999999999888888998876643 4567788999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+..|+..+.+.....++|+++|+||+
T Consensus 95 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 133 (183)
T 3kkq_A 95 -----------------------------------------IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 133 (183)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECT
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECC
Confidence 999999999999999999988765445789999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEecc-chHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTL-LIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk-~~~~~~~~l~~i 210 (329)
|+.+. .++++++++++++++++||+ ++.+.+++++.+
T Consensus 134 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l 176 (183)
T 3kkq_A 134 DLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176 (183)
T ss_dssp TCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHH
T ss_pred CchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHH
Confidence 98753 56888999999999999999 876677766554
No 15
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.94 E-value=1.1e-26 Score=200.91 Aligned_cols=159 Identities=29% Similarity=0.553 Sum_probs=135.2
Q ss_pred HHHhcCC--CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhc
Q psy2970 11 WFKSLFW--KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRG 88 (329)
Q Consensus 11 ~~~~~~~--~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ 88 (329)
++++++. ++.+||+++|++|||||||++++.++.+. .+.||+|.....+..+++.+.+|||||++.++..+..++++
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 83 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFEN 83 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTT
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCC
Confidence 4566665 67899999999999999999999988764 56788887777777778999999999999999999999999
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+|+++ +|||++++++|+....|+.++++.....++|+++
T Consensus 84 ~~~~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil 122 (181)
T 1fzq_A 84 TDILI-----------------------------------------YVIDSADRKRFEETGQELTELLEEEKLSCVPVLI 122 (181)
T ss_dssp CSEEE-----------------------------------------EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEE
T ss_pred CCEEE-----------------------------------------EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEE
Confidence 99999 9999999999999999999887765557899999
Q ss_pred EEEcCCCCChhhHHHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 169 LGNKRDLPNALDEKELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 169 VgNK~Dl~~~~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+||+|+.++...+++.+.++ ++++++||+++.+.+++++.+.
T Consensus 123 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 123 FANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHH
Confidence 999999987655555655543 4699999999888888776654
No 16
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.94 E-value=1.3e-26 Score=194.11 Aligned_cols=149 Identities=30% Similarity=0.593 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYI 100 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~ 100 (329)
+||+++|++|||||||++++.++.+. .+.||++.....++.+.+.+.+|||||+++++.++..+++++|+++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i------- 72 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI------- 72 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-CCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEE-------
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-cccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEE-------
Confidence 58999999999999999999998876 4688999877778888899999999999999999999999999999
Q ss_pred ehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh
Q psy2970 101 VSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180 (329)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e 180 (329)
+|||++++++|+....|+.++.......++|+++|+||+|+.++.+
T Consensus 73 ----------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 118 (164)
T 1r8s_A 73 ----------------------------------FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118 (164)
T ss_dssp ----------------------------------EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred ----------------------------------EEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC
Confidence 9999999999999999999988765567899999999999987655
Q ss_pred HHHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 181 EKELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 181 ~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+++.+.++ ++++++||+++.+.+++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (164)
T 1r8s_A 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 157 (164)
T ss_dssp HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHH
Confidence 555655554 4699999999877777776553
No 17
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=202.10 Aligned_cols=154 Identities=19% Similarity=0.319 Sum_probs=130.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4578999999999999999999999999988888999877644 3567789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+..|+..+.......++|+++|+||+
T Consensus 101 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 139 (201)
T 3oes_A 101 -----------------------------------------LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139 (201)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECT
T ss_pred -----------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 999999999999999999999876556789999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .+++++++.++++++++||+++.+.+++++.+.
T Consensus 140 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 182 (201)
T 3oes_A 140 DLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVI 182 (201)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHH
Confidence 98643 567889999999999999999888888876654
No 18
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.94 E-value=1.4e-26 Score=192.93 Aligned_cols=151 Identities=19% Similarity=0.313 Sum_probs=129.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+.+||+++|++|||||||++++.++.+...+.+|++..+.. ++++.+.+.+|||||++++..++..+++.+|+++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i-- 80 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL-- 80 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE--
Confidence 57999999999999999999999999887888888876653 4566789999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++++.+..|+.++.+.....++|+++|+||+|+
T Consensus 81 ---------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 121 (168)
T 1u8z_A 81 ---------------------------------------CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121 (168)
T ss_dssp ---------------------------------------EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGG
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccc
Confidence 99999999999999999998877544468999999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.+. .++++++++++++++++||+++.+.+++++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred cccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 653 56778889999999999999977777777654
No 19
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.94 E-value=1.4e-26 Score=200.86 Aligned_cols=151 Identities=13% Similarity=0.217 Sum_probs=129.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.++.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||++++..++..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 4567999999999999999999999999988889999987764 4567788999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+|||++++++|+.+ ..|+..+... ..++|+++|+||
T Consensus 100 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK 136 (194)
T 3reg_A 100 -----------------------------------------LCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLK 136 (194)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEEC
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 99999999999997 5566555433 367999999999
Q ss_pred CCCCCh-------hhHHHHHHHhCCc-EEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNA-------LDEKELIDRIMID-FWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~-------~e~~~l~~~~~~~-~~etSAk~~~~~~~~l~~i 210 (329)
+|+.++ .++++++++++++ ++++||+++.+.+++++.+
T Consensus 137 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 182 (194)
T 3reg_A 137 VDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKS 182 (194)
T ss_dssp GGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHH
T ss_pred hhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHH
Confidence 998642 5688899999998 9999999977777777655
No 20
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.94 E-value=3.3e-26 Score=192.49 Aligned_cols=151 Identities=29% Similarity=0.571 Sum_probs=130.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
++.+||+++|++|||||||++++.++.+. .+.||++.....+..+...+.+|||||+++++..+..+++++|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii---- 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI---- 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEE----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEE----
Confidence 56799999999999999999999998875 5678999888777777899999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|||++++++|+....++.+++......++|+++|+||+|+.+
T Consensus 80 -------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 80 -------------------------------------YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp -------------------------------------EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 9999999999999999999988765557899999999999987
Q ss_pred hhhHHHHHHHh--------CCcEEEEeccchHHHHHHhhhh
Q psy2970 178 ALDEKELIDRI--------MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 178 ~~e~~~l~~~~--------~~~~~etSAk~~~~~~~~l~~i 210 (329)
..+.+++.+.+ +++++++||+++.+.+++++.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (171)
T 1upt_A 123 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 163 (171)
T ss_dssp CCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHH
Confidence 64444444444 3479999999987777777655
No 21
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.94 E-value=2.1e-26 Score=194.90 Aligned_cols=153 Identities=18% Similarity=0.274 Sum_probs=133.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i- 85 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL- 85 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE-
Confidence 467999999999999999999999999888889999887654 3555689999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++++.+..|+.++++.....++|+++|+||+|
T Consensus 86 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 125 (181)
T 2fn4_A 86 ----------------------------------------LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 125 (181)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGG
T ss_pred ----------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 9999999999999999999886654456899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .+++++++..+++++++||+++.+.+++++.+.
T Consensus 126 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 167 (181)
T 2fn4_A 126 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 167 (181)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9653 557788889999999999999877777776653
No 22
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.94 E-value=1.5e-26 Score=199.86 Aligned_cols=153 Identities=28% Similarity=0.529 Sum_probs=129.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQ-DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~-~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
....||+++|++|||||||+++|.++.+.. .+.||++..+..++...+.+.+|||||+++++.++..+++++|+++
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii--- 91 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI--- 91 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE---
Confidence 467899999999999999999999999987 7899999888888899999999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC-------CCCcEEEE
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL-------IGIPILVL 169 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~-------~~iPIiLV 169 (329)
+|||++++++|+.+..|+.++++.... .++|++||
T Consensus 92 --------------------------------------~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 133 (199)
T 4bas_A 92 --------------------------------------FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFF 133 (199)
T ss_dssp --------------------------------------EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEE
T ss_pred --------------------------------------EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEE
Confidence 999999999999999999998765222 38999999
Q ss_pred EEcCCCCChhhHHHHHH---------HhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALDEKELID---------RIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e~~~l~~---------~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.+..+.+++.+ ..+++++++||+++.+++++++.+.
T Consensus 134 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (199)
T 4bas_A 134 ANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQ 184 (199)
T ss_dssp EECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred EECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHH
Confidence 99999987644333333 3456799999999777777776653
No 23
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.94 E-value=2.5e-26 Score=199.61 Aligned_cols=151 Identities=21% Similarity=0.294 Sum_probs=126.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.||++..+.. ++.+.+.+.+|||||+++++.+ ..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i- 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL- 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE-
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE-
Confidence 467999999999999999999999999888889999877643 4667789999999999998876 66999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc--CCCCcEEEEEEc
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ--LIGIPILVLGNK 172 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~--~~~iPIiLVgNK 172 (329)
+|||++++++|+.+..|+.++..... ..++|++||+||
T Consensus 97 ----------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 136 (187)
T 3c5c_A 97 ----------------------------------------VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNK 136 (187)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEEC
Confidence 99999999999999999988865421 257999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEec-cchHHHHHHhhhh
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLT-LLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSA-k~~~~~~~~l~~i 210 (329)
+|+.+. .++++++++++++++++|| +++.+++++++.+
T Consensus 137 ~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l 180 (187)
T 3c5c_A 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEA 180 (187)
T ss_dssp GGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHH
T ss_pred cchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHH
Confidence 999643 5688899999999999999 7877777776654
No 24
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.7e-26 Score=199.78 Aligned_cols=158 Identities=20% Similarity=0.266 Sum_probs=131.1
Q ss_pred HHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhh
Q psy2970 11 WFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCR 87 (329)
Q Consensus 11 ~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~ 87 (329)
++++...++++||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||+++ ...+..+++
T Consensus 19 ~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~ 97 (196)
T 2atv_A 19 YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMR 97 (196)
T ss_dssp --------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHH
T ss_pred chhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhc
Confidence 3445556778999999999999999999999999988888998877653 456678999999999998 788899999
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
.+|+++ +|||++++++|+.+..|+..+.+.....++|++
T Consensus 98 ~~d~ii-----------------------------------------lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii 136 (196)
T 2atv_A 98 WGEGFV-----------------------------------------LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI 136 (196)
T ss_dssp HCSEEE-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEE
T ss_pred cCCEEE-----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEE
Confidence 999999 999999999999999998888764444689999
Q ss_pred EEEEcCCCCCh-----hhHHHHHHHhCCcEEEEeccchH-HHHHHhhhh
Q psy2970 168 VLGNKRDLPNA-----LDEKELIDRIMIDFWITLTLLIR-WCESFLHHF 210 (329)
Q Consensus 168 LVgNK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~-~~~~~l~~i 210 (329)
+|+||+|+.+. .++++++++++++++++||+++. +.+++++.+
T Consensus 137 lv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l 185 (196)
T 2atv_A 137 LVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 185 (196)
T ss_dssp EEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred EEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHH
Confidence 99999999653 56788999999999999999977 777777655
No 25
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.94 E-value=4.7e-26 Score=190.48 Aligned_cols=152 Identities=24% Similarity=0.359 Sum_probs=131.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.+.+||+++|++|||||||++++.++.+...+.+|++..+.. ++...+.+.+|||||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 467999999999999999999999999887778888766532 4566789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+..|+.++.... ..++|+++|+||+
T Consensus 84 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~ 121 (170)
T 1r2q_A 84 -----------------------------------------VVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKA 121 (170)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECG
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECc
Confidence 9999999999999999998887642 3589999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.++ .++.+++++.+++++++||+++.+.+++++.+.
T Consensus 122 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~ 164 (170)
T 1r2q_A 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164 (170)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred cCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 98653 567788899999999999999888888776653
No 26
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.94 E-value=4.3e-26 Score=203.15 Aligned_cols=151 Identities=17% Similarity=0.276 Sum_probs=129.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||+|+++++.++..+++++|+++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i- 103 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL- 103 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE-
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE-
Confidence 457999999999999999999999999988889999988763 4677789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHH-HHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEA-SRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~-~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+. +..|+..+... ..++|++|||||+
T Consensus 104 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 141 (214)
T 3q3j_B 104 ----------------------------------------LCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKT 141 (214)
T ss_dssp ----------------------------------------EEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECG
T ss_pred ----------------------------------------EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECh
Confidence 9999999999999 67787777654 3589999999999
Q ss_pred CCCC-----------------hhhHHHHHHHhCC-cEEEEeccchHH-HHHHhhhhc
Q psy2970 174 DLPN-----------------ALDEKELIDRIMI-DFWITLTLLIRW-CESFLHHFG 211 (329)
Q Consensus 174 Dl~~-----------------~~e~~~l~~~~~~-~~~etSAk~~~~-~~~~l~~i~ 211 (329)
|+.+ ..+++++++++++ +|+||||+++.+ ++++++.+.
T Consensus 142 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~ 198 (214)
T 3q3j_B 142 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTAS 198 (214)
T ss_dssp GGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHH
T ss_pred hhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHH
Confidence 9954 2567889999999 999999999776 777776553
No 27
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=6.1e-26 Score=189.80 Aligned_cols=151 Identities=25% Similarity=0.375 Sum_probs=130.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
+.+||+++|++|||||||++++.++.+...+.||++..+. .++++.+.+.+|||||++.+...+..+++++|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i- 80 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL- 80 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE-
Confidence 3689999999999999999999999988778888886653 24567789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|+|++++.+++.+..|+..+.+.. ..++|+++|+||+|
T Consensus 81 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D 119 (170)
T 1ek0_A 81 ----------------------------------------VVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKID 119 (170)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGG
T ss_pred ----------------------------------------EEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCC
Confidence 9999999999999999998887653 36799999999999
Q ss_pred CCCh--------hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA--------LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~--------~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .+.+++++..+++++++||+++.+.+++++.+.
T Consensus 120 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (170)
T 1ek0_A 120 XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG 164 (170)
T ss_dssp GGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 8543 457788899999999999999888888776654
No 28
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.94 E-value=4.6e-26 Score=191.08 Aligned_cols=150 Identities=17% Similarity=0.166 Sum_probs=106.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
.+||+++|++|||||||++++.+..+. ...++.+..+. .+++..+.+.+|||||++.++.++..+++.+|+++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i--- 77 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYV--- 77 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEE---
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEE---
Confidence 589999999999999999999977654 23444444433 35777889999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+.++.+.....++|+++|+||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 78 --------------------------------------IVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119 (166)
T ss_dssp --------------------------------------EEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence 999999999999999999999876556789999999999997
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .+++++++.++++++++||+++.+.+++++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp SSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 53 457788999999999999999877787776553
No 29
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.94 E-value=4.6e-26 Score=196.92 Aligned_cols=154 Identities=24% Similarity=0.402 Sum_probs=132.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCcccc-chHHHHhhccce
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFR-SMWERYCRGVNA 91 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~-~~~~~~~~~ad~ 91 (329)
.++.+||+++|++|||||||++++.++.+...+.+|++.++.. ++++.+.+.+|||||+++++ .++..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3567999999999999999999999999887788888865542 35566899999999999998 889999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
++ +|||++++.+++.+..|+.++.+.....++|+++|+|
T Consensus 97 ii-----------------------------------------lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 135 (189)
T 1z06_A 97 VV-----------------------------------------FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGN 135 (189)
T ss_dssp EE-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEE
T ss_pred EE-----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 99 9999999999999999999888765457899999999
Q ss_pred cCCCCCh-----hhHHHHHHHhCCcEEEEeccch---HHHHHHhhhhc
Q psy2970 172 KRDLPNA-----LDEKELIDRIMIDFWITLTLLI---RWCESFLHHFG 211 (329)
Q Consensus 172 K~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~---~~~~~~l~~i~ 211 (329)
|+|+.+. .+.++++++++++++++||++. ..++++++.+.
T Consensus 136 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~ 183 (189)
T 1z06_A 136 KCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 183 (189)
T ss_dssp CTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred CccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHH
Confidence 9999653 4577889999999999999998 77777776654
No 30
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.94 E-value=1e-25 Score=195.67 Aligned_cols=154 Identities=18% Similarity=0.283 Sum_probs=133.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 3467999999999999999999999999888888888876643 4566689999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+..|+..+.......++|++||+||+
T Consensus 91 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 129 (206)
T 2bov_A 91 -----------------------------------------CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 129 (206)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECT
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecc
Confidence 999999999999999999998876545689999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++.+++++++++++++||+++.+.+++++.+.
T Consensus 130 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 172 (206)
T 2bov_A 130 DLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 172 (206)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred CccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99753 467788899999999999999777777776553
No 31
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.94 E-value=8.8e-26 Score=192.83 Aligned_cols=154 Identities=22% Similarity=0.372 Sum_probs=133.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---Ee--eCc---------eEEEEEEecCCCccccchH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KI--TKG---------NVTIKVWDIGGQPRFRSMW 82 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i--~~~---------~~~l~I~DtpG~e~~~~~~ 82 (329)
..+.+||+++|++|||||||++++.++.+...+.||++.++. .+ +.. .+.+.+|||||++++...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 456799999999999999999999999988888899987765 22 333 6899999999999999999
Q ss_pred HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCC
Q psy2970 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLI 162 (329)
Q Consensus 83 ~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~ 162 (329)
..+++.+|+++ +|||++++.+++.+..|+..+.......
T Consensus 88 ~~~~~~~d~~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 126 (195)
T 3bc1_A 88 TAFFRDAMGFL-----------------------------------------LLFDLTNEQSFLNVRNWISQLQMHAYSE 126 (195)
T ss_dssp HHTTTTCSEEE-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHSSSS
T ss_pred HHHHcCCCEEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999 9999999999999999999887754446
Q ss_pred CCcEEEEEEcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 163 GIPILVLGNKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+++|+||+|+.+. .+++++++.++++++++||+++.+++++++.+.
T Consensus 127 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 180 (195)
T 3bc1_A 127 NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180 (195)
T ss_dssp SCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred CCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999753 567888999999999999999777777776553
No 32
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.94 E-value=6.5e-26 Score=192.88 Aligned_cols=153 Identities=18% Similarity=0.292 Sum_probs=132.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i- 94 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL- 94 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE-
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE-
Confidence 467999999999999999999999999888888888876643 4566689999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++++.+..|+.++.......++|+++|+||+|
T Consensus 95 ----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 134 (187)
T 2a9k_A 95 ----------------------------------------CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 134 (187)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGG
T ss_pred ----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 9999999999999999999887754446899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .++.+++++++++++++||+++.+.+++++.+.
T Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 176 (187)
T 2a9k_A 135 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176 (187)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHH
Confidence 8653 467788899999999999999777777776553
No 33
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=8.9e-26 Score=194.07 Aligned_cols=151 Identities=19% Similarity=0.345 Sum_probs=131.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
+.+||+++|++|||||||++++.++.+...+.+|++.++. .++...+.+.+|||||++++..++..+++.+|+++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii- 92 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI- 92 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE-
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE-
Confidence 4689999999999999999999999988788888886654 24567789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++.+++.+..|+.++.......++|+++|+||+|
T Consensus 93 ----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D 132 (195)
T 1x3s_A 93 ----------------------------------------LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 132 (195)
T ss_dssp ----------------------------------------EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTT
T ss_pred ----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCc
Confidence 9999999999999999999887654456899999999999
Q ss_pred CCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. .++.+++++.+++++++||+++.+.+++++.+
T Consensus 133 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (195)
T 1x3s_A 133 KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 172 (195)
T ss_dssp SSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9543 56778899999999999999977777776655
No 34
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.94 E-value=1.5e-25 Score=185.80 Aligned_cols=151 Identities=20% Similarity=0.301 Sum_probs=130.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+++||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i-- 79 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL-- 79 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE--
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE--
Confidence 36899999999999999999999998887778888766543 4566788999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++.+++.+..|+.++.+.....++|+++|+||+|+
T Consensus 80 ---------------------------------------~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl 120 (166)
T 2ce2_X 80 ---------------------------------------CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120 (166)
T ss_dssp ---------------------------------------EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhh
Confidence 99999999999999999888876544457999999999998
Q ss_pred CCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.+. .+.++++++++++++++||+++.+.+++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp SCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 753 56788999999999999999977777776654
No 35
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.94 E-value=1.3e-25 Score=195.35 Aligned_cols=149 Identities=17% Similarity=0.305 Sum_probs=126.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE--eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..+++||+++|++|||||||++++.++.+...+.||.+..... +++..+.+.+|||+|+++++ +++.+|+++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i- 90 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV- 90 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE-
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE-
Confidence 4578999999999999999999999999987788885533222 45667899999999999876 788899999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+.++.......++|++|||||+|
T Consensus 91 ----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 130 (184)
T 3ihw_A 91 ----------------------------------------FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDA 130 (184)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTT
T ss_pred ----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 9999999999999999999998765456899999999999
Q ss_pred CCC-------hhhHHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPN-------ALDEKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~-------~~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+ ..++++++++++ ++|+++||+++.+++++++.+.
T Consensus 131 l~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~ 175 (184)
T 3ihw_A 131 ISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVA 175 (184)
T ss_dssp CBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHH
Confidence 942 256788999997 8999999999777777776553
No 36
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.94 E-value=1.1e-25 Score=188.66 Aligned_cols=152 Identities=22% Similarity=0.335 Sum_probs=131.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.+.+||+++|++|||||||++++.++.+...+.||.+..+.. ++.....+.+|||||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 467999999999999999999999999887788888866542 4566789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++.+++.+..|+..+... ...++|+++|+||+
T Consensus 84 -----------------------------------------~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~ 121 (170)
T 1z0j_A 84 -----------------------------------------IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKC 121 (170)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECT
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECC
Confidence 999999999999998888887653 24679999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .+.+++++.++++++++||+++.+.+++++.+.
T Consensus 122 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 164 (170)
T 1z0j_A 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS 164 (170)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 99653 457788899999999999999877777776553
No 37
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.94 E-value=7.6e-26 Score=195.69 Aligned_cols=154 Identities=27% Similarity=0.516 Sum_probs=129.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ-FSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~-~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
..+.+||+++|++|||||||++++.++. +...+.+|++.....+..++..+.+|||||+++++..+..+++++|+++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii-- 95 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAII-- 95 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEE--
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEE--
Confidence 4578999999999999999999999887 5667889999887777777899999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC--CCCcEEEEEEcC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL--IGIPILVLGNKR 173 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~--~~iPIiLVgNK~ 173 (329)
+|||++++++++.+..|+.++.+.... .++|+++|+||+
T Consensus 96 ---------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 136 (190)
T 2h57_A 96 ---------------------------------------FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136 (190)
T ss_dssp ---------------------------------------EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECT
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCc
Confidence 999999999999999999999876544 689999999999
Q ss_pred CCCChhhHHHHHHH--------hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNALDEKELIDR--------IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~~e~~~l~~~--------~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.++.+.+++.+. .+++++++||+++.+.+++++.+.
T Consensus 137 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 182 (190)
T 2h57_A 137 DLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQ 182 (190)
T ss_dssp TSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 99876333333332 246899999999877787776653
No 38
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.94 E-value=3.8e-26 Score=191.92 Aligned_cols=151 Identities=24% Similarity=0.380 Sum_probs=123.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
++.+||+++|++|||||||++++.++.+...+.||++.++. . +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 56799999999999999999999999988778888887654 2 4567789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|+|++++++++.+..|+..+.... ..++|+++|+||+
T Consensus 84 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~ 121 (170)
T 1z08_A 84 -----------------------------------------LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKI 121 (170)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECG
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECc
Confidence 9999999999999999988875532 2578999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.++ .++++++++++++++++||+++.+.+++++.+
T Consensus 122 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99653 56788999999999999999987777777655
No 39
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.94 E-value=3.6e-26 Score=191.28 Aligned_cols=150 Identities=22% Similarity=0.398 Sum_probs=129.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
++.+||+++|++|||||||++++.++.+...+.||++.++.. +++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999999888888888866542 3456789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|+|++++++++.+..|+.++.... .++|+++|+||+
T Consensus 83 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~ 119 (168)
T 1z2a_A 83 -----------------------------------------LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKI 119 (168)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECG
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECc
Confidence 9999999999999999988886642 679999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .++++++++++++++++||+++.+.+++++.+
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 120 DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp GGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred ccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 98652 56778999999999999999977777766554
No 40
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.94 E-value=7.6e-26 Score=191.47 Aligned_cols=152 Identities=22% Similarity=0.417 Sum_probs=129.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++.++.. +++..+.+.+|||||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 3567999999999999999999999999887788888866542 345568999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+..+... ..++|+++|+||
T Consensus 86 i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK 122 (181)
T 3tw8_B 86 I-----------------------------------------VVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNK 122 (181)
T ss_dssp E-----------------------------------------EEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEEC
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 9 999999999999999999888664 357999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .++.++++..+++++++||+++.+.+++++.+.
T Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (181)
T 3tw8_B 123 NDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCIT 166 (181)
T ss_dssp TTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 998653 567889999999999999999877787776654
No 41
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.94 E-value=1.7e-25 Score=192.78 Aligned_cols=152 Identities=24% Similarity=0.409 Sum_probs=131.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
+..+||+++|++|||||||++++.++.+...+.+|++.++.. +++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 456899999999999999999999999888888888866542 3456689999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+..|+..+.... ..++|+++|+||+
T Consensus 94 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~ 131 (196)
T 3tkl_A 94 -----------------------------------------VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKC 131 (196)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECT
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECc
Confidence 9999999999999999988886543 3579999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .+++++++.++++++++||+++.+.+++++.+.
T Consensus 132 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 132 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp TCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence 99754 567889999999999999999777777776553
No 42
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.93 E-value=6.7e-26 Score=189.97 Aligned_cols=151 Identities=22% Similarity=0.393 Sum_probs=123.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..+||+++|++|||||||++++.++++...+.||++.++. . +++..+.+.+|||||++++...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i- 80 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII- 80 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE-
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE-
Confidence 4689999999999999999999999988778888886553 2 3456789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|+|++++.+++.+..|+..+.... ..++|+++|+||+|
T Consensus 81 ----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D 119 (170)
T 1g16_A 81 ----------------------------------------LVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSD 119 (170)
T ss_dssp ----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTT
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcc
Confidence 9999999999999999988886642 35789999999999
Q ss_pred CCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .++++++++++++++++||+++.+.+++++.+.
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 120 METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp CTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9542 567889999999999999999777777776553
No 43
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.93 E-value=1.5e-25 Score=190.40 Aligned_cols=153 Identities=22% Similarity=0.310 Sum_probs=131.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++..+.. ++...+.+.+|||||++++...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 3567999999999999999999999999887777888765542 456678999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+..+.... ..++|+++|+||
T Consensus 89 i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK 126 (181)
T 2efe_B 89 I-----------------------------------------IVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNK 126 (181)
T ss_dssp E-----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEEC
Confidence 9 9999999999999999998887643 358999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .++++++++.+++++++||+++...+++++.+.
T Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 170 (181)
T 2efe_B 127 SDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 170 (181)
T ss_dssp TTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHH
T ss_pred CcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 999653 467788999999999999999877788776654
No 44
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.93 E-value=5e-26 Score=200.21 Aligned_cols=153 Identities=24% Similarity=0.336 Sum_probs=123.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
.++.+||+++|++|||||||++++.++.+...+.+|++.++. . +++..+.+.+|||||+++++.++..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 345699999999999999999999999988788899886653 2 345568999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++++|+.+..|+.++.+.. ..++|++||+||
T Consensus 106 i-----------------------------------------lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK 143 (201)
T 2hup_A 106 I-----------------------------------------LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNK 143 (201)
T ss_dssp E-----------------------------------------EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEEC
Confidence 9 9999999999999999998887643 367999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .+++++++++++ +++++||+++.++++++..+.
T Consensus 144 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 188 (201)
T 2hup_A 144 SDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVA 188 (201)
T ss_dssp TTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHH
T ss_pred CccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999753 567889999999 999999999777777776553
No 45
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=9.3e-26 Score=191.59 Aligned_cols=154 Identities=25% Similarity=0.409 Sum_probs=124.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccc
Q psy2970 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVN 90 (329)
Q Consensus 16 ~~~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad 90 (329)
+.++.+||+++|++|||||||++++.++.+. ..+.||++.++.. +++..+.+.+|||||+++++.++..+++++|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 4567899999999999999999999998884 4677888877653 4566789999999999999999999999999
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
+++ +|+|++++.+++.+..|+..+..... .++|+++|+
T Consensus 86 ~ii-----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~ 123 (180)
T 2g6b_A 86 ALL-----------------------------------------LLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLG 123 (180)
T ss_dssp EEE-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEE
T ss_pred EEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEE
Confidence 999 99999999999999999888866432 679999999
Q ss_pred EcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 171 NKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 171 NK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+|+.++ .++++++++++++++++||+++.+.+++++.+.
T Consensus 124 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 169 (180)
T 2g6b_A 124 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 169 (180)
T ss_dssp ECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred ECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999753 467788999999999999999777777776553
No 46
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.93 E-value=1.4e-25 Score=193.38 Aligned_cols=150 Identities=19% Similarity=0.298 Sum_probs=127.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
++.+||+++|++|||||||++++.++.+...+.||++..+.. ++...+.+.+|||||++++..++..+++.+|+++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i- 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL- 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE-
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE-
Confidence 567999999999999999999999999988888999877643 4567789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+ ..|+..+.+. ..++|+++|+||+
T Consensus 84 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 121 (184)
T 1m7b_A 84 ----------------------------------------ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 121 (184)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECG
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcc
Confidence 99999999999998 5677666543 2579999999999
Q ss_pred CCCC-----------------hhhHHHHHHHhC-CcEEEEecc-chHHHHHHhhhh
Q psy2970 174 DLPN-----------------ALDEKELIDRIM-IDFWITLTL-LIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~-----------------~~e~~~l~~~~~-~~~~etSAk-~~~~~~~~l~~i 210 (329)
|+.+ ..++++++++++ .+++++||+ ++.+.+++++.+
T Consensus 122 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i 177 (184)
T 1m7b_A 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177 (184)
T ss_dssp GGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHH
T ss_pred hhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHH
Confidence 9963 145778999988 799999999 577777777654
No 47
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.93 E-value=1.1e-25 Score=190.05 Aligned_cols=152 Identities=18% Similarity=0.299 Sum_probs=130.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++.++. .++...+.+.+|||||++++...+..+++++|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 345799999999999999999999999988778888876543 2456678999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+.++.... ..++|+++|+||
T Consensus 92 i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK 129 (179)
T 1z0f_A 92 L-----------------------------------------MVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNK 129 (179)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEEC
Confidence 9 9999999999999999988876542 357999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+.++ .++++++++++++++++||+++.+.+++++.+
T Consensus 130 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (179)
T 1z0f_A 130 ADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA 172 (179)
T ss_dssp TTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999643 46788899999999999999977777776554
No 48
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.93 E-value=6e-26 Score=195.24 Aligned_cols=153 Identities=25% Similarity=0.418 Sum_probs=129.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
..+.+||+++|++|||||||++++.++++ ..+.+|++..+..+..++..+.+|||||+++++.++..+++++|+++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii--- 93 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI--- 93 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEE---
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEE---
Confidence 35679999999999999999999999988 56778888877777777899999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+.++++.....++|+++|+||+|+.
T Consensus 94 --------------------------------------~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 94 --------------------------------------VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135 (181)
T ss_dssp --------------------------------------EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcc
Confidence 999999999999999999999876545789999999999998
Q ss_pred ChhhHHHHHHHh--------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NALDEKELIDRI--------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~~e~~~l~~~~--------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++.+.+++.+.+ +++++++||+++.+.+++++.+.
T Consensus 136 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 178 (181)
T 2h17_A 136 ECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 178 (181)
T ss_dssp TCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 754444444443 35799999999888888776653
No 49
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.93 E-value=6.4e-26 Score=190.74 Aligned_cols=150 Identities=18% Similarity=0.194 Sum_probs=113.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccc-hHHHHhhccceeEe
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS-MWERYCRGVNAIVW 94 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~-~~~~~~~~ad~iI~ 94 (329)
.+||+++|++|||||||++++.+..+...+.++.+.+.. .+++..+.+.+|||||++++.. ++..+++.+|+++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i- 80 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL- 80 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEE-
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEE-
Confidence 479999999999999999999987765444443333322 2466778999999999999876 7788899999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+.++.......++|+++|+||+|
T Consensus 81 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 120 (169)
T 3q85_A 81 ----------------------------------------IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 120 (169)
T ss_dssp ----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTT
T ss_pred ----------------------------------------EEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcc
Confidence 9999999999999999999998765556899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. .+++++++.++++++++||+++.+.+++++.+
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 121 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp CGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred hhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9743 56788999999999999999977777776654
No 50
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=188.16 Aligned_cols=152 Identities=20% Similarity=0.171 Sum_probs=115.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCcc--ccchHHHHhhccce
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPR--FRSMWERYCRGVNA 91 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~--~~~~~~~~~~~ad~ 91 (329)
.+.+||+++|++|||||||++++.++.+...+ ++.+.++. .+++..+.+.+|||||++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 46799999999999999999999998875432 34443322 3456678999999999988 56677888899999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
++ +|||++++++|+.+..|+..+.+.....++|+++|+|
T Consensus 81 ~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~N 119 (175)
T 2nzj_A 81 YV-----------------------------------------IVYSIADRGSFESASELRIQLRRTHQADHVPIILVGN 119 (175)
T ss_dssp EE-----------------------------------------EEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEE
T ss_pred EE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEE
Confidence 99 9999999999999999998887754456899999999
Q ss_pred cCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 172 KRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 172 K~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+|+.+. .+++++++.++++++++||+++.+.+++++.+.
T Consensus 120 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 164 (175)
T 2nzj_A 120 KADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVV 164 (175)
T ss_dssp CTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred ChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Confidence 9999753 456778889999999999999877777776653
No 51
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.93 E-value=1.1e-25 Score=191.52 Aligned_cols=147 Identities=13% Similarity=0.254 Sum_probs=120.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+++||+++|++|||||||++++.++.+.. +.||++..+.. +++..+.+++|||||+++ ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i- 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI- 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE-
Confidence 468999999999999999999999999875 78888866543 456678999999999987 46889999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC--CcCCCCcEEEEEEc
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK--PQLIGIPILVLGNK 172 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~--~~~~~iPIiLVgNK 172 (329)
+|||++++++|+.+..|+..+... ....++|++|||||
T Consensus 78 ----------------------------------------lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 117 (178)
T 2iwr_A 78 ----------------------------------------FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117 (178)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEEC
T ss_pred ----------------------------------------EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 999999999999999875544332 22368999999999
Q ss_pred CCCCC-------hhhHHHHHHHh-CCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPN-------ALDEKELIDRI-MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~-------~~e~~~l~~~~-~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+ ..+++++++++ +++++++||+++.+.+++++.+.
T Consensus 118 ~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~ 164 (178)
T 2iwr_A 118 DRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVA 164 (178)
T ss_dssp TTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHH
T ss_pred ccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHH
Confidence 99932 25677888887 68999999999777777776553
No 52
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.93 E-value=2.1e-26 Score=196.88 Aligned_cols=152 Identities=23% Similarity=0.380 Sum_probs=102.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
+..+||+++|++|||||||++++.++.+...+.||++.++.. +++..+.+.+|||||++++..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 457999999999999999999999998887788888876542 3456689999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+..|+.++.... ..++|++||+||+
T Consensus 86 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~ 123 (183)
T 2fu5_C 86 -----------------------------------------LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKC 123 (183)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC-
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECc
Confidence 9999999999999999988886642 3579999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++++++++++++++++||+++.+.+++++.+.
T Consensus 124 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 166 (183)
T 2fu5_C 124 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166 (183)
T ss_dssp -CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred cCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99753 567889999999999999999777777776553
No 53
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.1e-25 Score=188.60 Aligned_cols=152 Identities=21% Similarity=0.291 Sum_probs=128.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+++||+++|++|||||||++++.++.+...+.||++..+.. .+.+.+.+.+|||||++++..++..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i-- 79 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFI-- 79 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEE--
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEE--
Confidence 57999999999999999999999999887788888876654 3566788999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC-cCCCCcEEEEEEcCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP-QLIGIPILVLGNKRD 174 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~-~~~~iPIiLVgNK~D 174 (329)
+|||++++.+++....|+..+.+.. ...++|+++|+||+|
T Consensus 80 ---------------------------------------~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~D 120 (172)
T 2erx_A 80 ---------------------------------------LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD 120 (172)
T ss_dssp ---------------------------------------EEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGG
T ss_pred ---------------------------------------EEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccc
Confidence 9999999999998888887776531 235799999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .+.+++++.++++++++||+++.+.+++++.+.
T Consensus 121 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (172)
T 2erx_A 121 ESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162 (172)
T ss_dssp GGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHH
Confidence 8653 457788889999999999999887888776654
No 54
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.93 E-value=8.2e-26 Score=198.58 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=123.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccc-hHHHHhhccce
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS-MWERYCRGVNA 91 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~-~~~~~~~~ad~ 91 (329)
....+||+++|++|||||||+++|.+..+...+.|+++.+.. .+++..+.+.+|||+|++.+.. ++..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 346799999999999999999999765443233444443322 2566778999999999998765 77889999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
++ +|||++++++|+.+..|+.++.......++|+++|||
T Consensus 100 ~i-----------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 138 (195)
T 3cbq_A 100 FL-----------------------------------------IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 138 (195)
T ss_dssp EE-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred EE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEee
Confidence 99 9999999999999999999887654345899999999
Q ss_pred cCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 172 KRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 172 K~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+|+.+. .+++++++.++++++|+||+++.+.+++++.+
T Consensus 139 K~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l 182 (195)
T 3cbq_A 139 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 182 (195)
T ss_dssp CTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred chhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHH
Confidence 9999753 46788999999999999999977777776554
No 55
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.6e-25 Score=194.71 Aligned_cols=153 Identities=25% Similarity=0.320 Sum_probs=132.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
.++.+||+++|++|||||||++++.++.+...+.||++..+.. ++...+.+.+|||||++++...+..+++.+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 4568999999999999999999999999877788888876542 456788999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++++++.+..|+.++.+.. ..++|+++|+||
T Consensus 100 i-----------------------------------------lV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK 137 (192)
T 2fg5_A 100 V-----------------------------------------IVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNK 137 (192)
T ss_dssp E-----------------------------------------EEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEC
Confidence 9 9999999999999999988886642 357999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .++++++++++++++++||+++.+.+++++.+.
T Consensus 138 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (192)
T 2fg5_A 138 CDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGIS 181 (192)
T ss_dssp GGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 999742 567889999999999999999877888776654
No 56
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.93 E-value=1.3e-25 Score=192.10 Aligned_cols=152 Identities=23% Similarity=0.343 Sum_probs=130.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
++.+||+++|++|||||||++++.++.+...+.+|++.++.. ++++.+.+.+|||||++++...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 457999999999999999999999999887888888866542 3455689999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+..|+.++.... ..++|+++|+||+
T Consensus 88 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~ 125 (186)
T 2bme_A 88 -----------------------------------------LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKK 125 (186)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECG
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECc
Confidence 9999999999999999988776532 3679999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++++++++.+++++++||+++.+.+++++.+.
T Consensus 126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 168 (186)
T 2bme_A 126 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA 168 (186)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 99643 567788999999999999999777777776553
No 57
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.93 E-value=6.2e-26 Score=192.38 Aligned_cols=153 Identities=21% Similarity=0.330 Sum_probs=126.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeE--EEee--C-ceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNM--RKIT--K-GNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~--~~i~--~-~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
.++++||+++|++|||||||++++.++.+...+.||++.++ ..+. + ..+.+.+|||||++.+..++..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 35789999999999999999999999988777778887544 3333 2 35899999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc-CCCCc-EEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ-LIGIP-ILVL 169 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~-~~~iP-IiLV 169 (329)
++ +|||++++++++.+..|+.++..... ..+.| +++|
T Consensus 83 ~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv 121 (178)
T 2hxs_A 83 VL-----------------------------------------LVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121 (178)
T ss_dssp EE-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred EE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEE
Confidence 99 99999999999999888887755211 12445 8999
Q ss_pred EEcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 170 GNKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 170 gNK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+||+|+.+. .++++++++++++++++||+++.+.+++++.+
T Consensus 122 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 167 (178)
T 2hxs_A 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKV 167 (178)
T ss_dssp EECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Confidence 999999653 56778999999999999999977777777655
No 58
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.93 E-value=1.7e-25 Score=189.04 Aligned_cols=151 Identities=21% Similarity=0.370 Sum_probs=130.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
+++||+++|++|||||||++++.++.+...+.+|++.++.. ++++.+.+.+|||||++++...+..+++++|+++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i- 91 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV- 91 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE-
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE-
Confidence 56999999999999999999999999888888888866542 4556689999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++.+++.+..|+.++.... ..++|+++|+||+|
T Consensus 92 ----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D 130 (179)
T 2y8e_A 92 ----------------------------------------VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTD 130 (179)
T ss_dssp ----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGG
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCc
Confidence 9999999999999999988886542 35799999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.++ .+.++++++.+++++++||+++.+.+++++.+.
T Consensus 131 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 172 (179)
T 2y8e_A 131 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172 (179)
T ss_dssp GGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred ccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9653 457778889999999999999877787776654
No 59
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.93 E-value=1.4e-25 Score=194.43 Aligned_cols=152 Identities=18% Similarity=0.276 Sum_probs=126.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||++++.++++...+.+|++.++. . ++++.+.+.+|||||+++++.++..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999999988777788775543 2 4556789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+..|+.++.... ..++|+++|+||+
T Consensus 99 -----------------------------------------~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~ 136 (191)
T 2a5j_A 99 -----------------------------------------LVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKS 136 (191)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECT
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECc
Confidence 9999999999999999988886642 3579999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++++++++++++++++||+++.+++++++.+.
T Consensus 137 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 179 (191)
T 2a5j_A 137 DLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA 179 (191)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred ccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99652 567889999999999999999877777776553
No 60
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.7e-25 Score=193.67 Aligned_cols=150 Identities=15% Similarity=0.214 Sum_probs=128.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
++.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||+++++.++..+++++|+++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i- 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL- 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE-
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE-
Confidence 356899999999999999999999999888888998877643 3456689999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+. .|+..+.+. ..++|+++|+||+
T Consensus 95 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 132 (194)
T 2atx_A 95 ----------------------------------------ICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQI 132 (194)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECT
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECh
Confidence 999999999999997 677777653 3489999999999
Q ss_pred CCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .++.+++++++. +++++||+++.+.+++++.+
T Consensus 133 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 187 (194)
T 2atx_A 133 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187 (194)
T ss_dssp TSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHH
T ss_pred hhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHH
Confidence 99652 457788899998 89999999977777777654
No 61
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.93 E-value=2.9e-26 Score=195.07 Aligned_cols=151 Identities=21% Similarity=0.290 Sum_probs=113.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.++.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||+++++.++..+++++|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 4578999999999999999999999999888888998866543 4556778899999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+|||++++++++.+. .|+..+... ..++|+++|+||
T Consensus 85 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK 121 (182)
T 3bwd_D 85 -----------------------------------------LAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTK 121 (182)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEEC
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEec
Confidence 999999999999997 577666553 247999999999
Q ss_pred CCCCCh---------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNA---------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~---------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
+|+.+. .+++++++.++. +++++||+++.+.+++++.+
T Consensus 122 ~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 175 (182)
T 3bwd_D 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAA 175 (182)
T ss_dssp HHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred hhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHH
Confidence 998543 346788899996 99999999987777777655
No 62
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.93 E-value=2.2e-25 Score=192.63 Aligned_cols=153 Identities=22% Similarity=0.395 Sum_probs=131.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
.+..+||+++|++|||||||++++.++.+...+.+|++.++.. ++.+.+.+.+|||||++++..++..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 3456899999999999999999999999887788888866542 356678999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+..+.... ..++|+++|+||
T Consensus 99 i-----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK 136 (189)
T 2gf9_A 99 L-----------------------------------------LMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNK 136 (189)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEEC
Confidence 9 9999999999999999988876542 357999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .++++++++++++++++||+++.+++++++.+.
T Consensus 137 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 180 (189)
T 2gf9_A 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180 (189)
T ss_dssp TTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred cccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999753 467889999999999999999877777776553
No 63
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.4e-25 Score=198.92 Aligned_cols=153 Identities=22% Similarity=0.344 Sum_probs=131.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++.++.. +++..+.+.+|||||++++..++..+++.+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 3457999999999999999999999999988888998876542 456678999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++++|+.+..|+.++.... ..++|+++|+||
T Consensus 103 i-----------------------------------------~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK 140 (201)
T 2ew1_A 103 I-----------------------------------------LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNK 140 (201)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEEC
Confidence 9 9999999999999999988876542 357899999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .+++++++..+++++++||+++.+++++++.+.
T Consensus 141 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (201)
T 2ew1_A 141 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184 (201)
T ss_dssp GGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred CCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999643 567788889999999999999777777776553
No 64
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.93 E-value=3.5e-25 Score=191.61 Aligned_cols=152 Identities=22% Similarity=0.365 Sum_probs=131.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++..+.. ++...+.+.+|||||++++..++..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 3456999999999999999999999999887788888866542 456778999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+..+.... ..++|+++|+||
T Consensus 102 i-----------------------------------------~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK 139 (193)
T 2oil_A 102 L-----------------------------------------LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNK 139 (193)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEEC
Confidence 9 9999999999999999998886643 367999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+.+. .+++++++..+++++++||+++.+.+++++.+
T Consensus 140 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 182 (193)
T 2oil_A 140 SDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 182 (193)
T ss_dssp GGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred CCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999653 56778888999999999999977777777655
No 65
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.93 E-value=6.2e-25 Score=188.11 Aligned_cols=151 Identities=19% Similarity=0.312 Sum_probs=127.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE--ee--Cce----------------------------
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK--IT--KGN---------------------------- 64 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~--i~--~~~---------------------------- 64 (329)
.++.+||+++|++|||||||++++.++.+...+.||++.++.. +. ...
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3568999999999999999999999999988888998866542 32 222
Q ss_pred ---------EEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEE
Q psy2970 65 ---------VTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKY 135 (329)
Q Consensus 65 ---------~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 135 (329)
..+.+|||||++.+...+..+++.+|+++ +
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i-----------------------------------------~ 122 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI-----------------------------------------V 122 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEE-----------------------------------------E
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEE-----------------------------------------E
Confidence 88999999999999999999999999999 9
Q ss_pred EEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC----hhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 136 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN----ALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 136 V~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~----~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|||++++.+++.+..|+.++... .++|+++|+||+|+.. ..++++++++.+++++++||+++.+.+++++.+.
T Consensus 123 v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 199 (208)
T 3clv_A 123 VFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLA 199 (208)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999999888764 2399999999999432 1567888999999999999999777777776553
No 66
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.93 E-value=3e-25 Score=193.47 Aligned_cols=151 Identities=19% Similarity=0.386 Sum_probs=129.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||++++.++.+...+.+|++..+.. ++...+.+.+|||||++++..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 456899999999999999999999999887888888866542 3566789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++.+++.+..|+.++.... ..++|+++|+||+
T Consensus 86 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~ 123 (203)
T 1zbd_A 86 -----------------------------------------LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKC 123 (203)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECT
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECc
Confidence 9999999999999999988886542 3578999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .+++++++.++++++++||+++.+.+++++.+
T Consensus 124 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (203)
T 1zbd_A 124 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165 (203)
T ss_dssp TCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred ccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 99763 45778999999999999999976666666554
No 67
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.93 E-value=1.3e-25 Score=198.11 Aligned_cols=154 Identities=27% Similarity=0.419 Sum_probs=131.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCc----------eEEEEEEecCCCccccchH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKG----------NVTIKVWDIGGQPRFRSMW 82 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~----------~~~l~I~DtpG~e~~~~~~ 82 (329)
+++.+||+++|++|||||||+++|.++.+...+.+|++.++.. ++.. .+.+.+|||||+++++..+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 4567999999999999999999999999887888888876642 3343 7889999999999999999
Q ss_pred HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCC
Q psy2970 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLI 162 (329)
Q Consensus 83 ~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~ 162 (329)
..+++.+|+++ +|||++++.+++.+..|+.++.......
T Consensus 102 ~~~~~~~d~ii-----------------------------------------lV~D~~~~~s~~~~~~~l~~i~~~~~~~ 140 (217)
T 2f7s_A 102 TAFFRDAMGFL-----------------------------------------LMFDLTSQQSFLNVRNWMSQLQANAYCE 140 (217)
T ss_dssp HHHHTTCCEEE-----------------------------------------EEEETTCHHHHHHHHHHHHTCCCCCTTT
T ss_pred HHHhcCCCEEE-----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhcCcC
Confidence 99999999999 9999999999999999988876554446
Q ss_pred CCcEEEEEEcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 163 GIPILVLGNKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|++||+||+|+.+. .+++++++.++++++++||+++..++++++.+.
T Consensus 141 ~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 194 (217)
T 2f7s_A 141 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 194 (217)
T ss_dssp CCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHH
T ss_pred CCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999653 567889999999999999999777777776553
No 68
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.93 E-value=2.9e-25 Score=194.34 Aligned_cols=152 Identities=24% Similarity=0.400 Sum_probs=131.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
+..+||+++|++|||||||++++.++.+...+.||++.++. . +++..+.+.+|||||+++++..+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45799999999999999999999999998888888886654 2 4566789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++.+++.+..|+..+.... ..++|++||+||+
T Consensus 86 -----------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~ 123 (206)
T 2bcg_Y 86 -----------------------------------------IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKC 123 (206)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECT
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECC
Confidence 9999999999999999988886543 3579999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++.++++..+++++++||+++.+.+++++.+.
T Consensus 124 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 166 (206)
T 2bcg_Y 124 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA 166 (206)
T ss_dssp TCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred CCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99763 467788899999999999999777777776553
No 69
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.93 E-value=1.5e-25 Score=192.24 Aligned_cols=151 Identities=22% Similarity=0.258 Sum_probs=124.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCC-----------CCCceeeeEEE-----eeCceEEEEEEecCCCccccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQD-----------MIPTVGFNMRK-----ITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~-----------~~pTig~~~~~-----i~~~~~~l~I~DtpG~e~~~~ 80 (329)
.++.+||+++|++|||||||++.+.+. +... +.||++.++.. ++++.+.+++|||||+++++.
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 456799999999999999999766553 3333 45688877653 456788999999999999999
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECC------CcccHHHHHHHHHH
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA------DTDKLEASRNELHA 154 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt------~~~S~~~~~~~l~~ 154 (329)
++..+++++|+++ +|||++ +.++|+.+..|+.+
T Consensus 90 ~~~~~~~~~d~~i-----------------------------------------~v~D~~~~~~~~~~~s~~~l~~~l~~ 128 (198)
T 3t1o_A 90 SRKLILRGVDGIV-----------------------------------------FVADSAPNRLRANAESMRNMRENLAE 128 (198)
T ss_dssp HHHHHTTTCCEEE-----------------------------------------EEEECCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEE-----------------------------------------EEEECCcchhhHhHHHHHHHHHHHHh
Confidence 9999999999999 999999 56778888888887
Q ss_pred HHhCCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLPNA---LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. ....++|++||+||+|+.++ .+++++++++++ +++++||+++.+++++++.+.
T Consensus 129 ~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 187 (198)
T 3t1o_A 129 YG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVS 187 (198)
T ss_dssp TT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHH
T ss_pred hc--cccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHH
Confidence 73 23578999999999999765 567788888899 999999999877777776553
No 70
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.93 E-value=3.4e-25 Score=196.65 Aligned_cols=151 Identities=19% Similarity=0.290 Sum_probs=127.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.++.+||+++|++|||||||++++.++.+...+.||++..+.. ++...+.+.+|||||++++..++..+++++|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 3567999999999999999999999999988888999877643 3567789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+|||++++++|+.+ ..|+..+.+. ..++|++||+||
T Consensus 105 -----------------------------------------lv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK 141 (205)
T 1gwn_A 105 -----------------------------------------ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCK 141 (205)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEEC
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEec
Confidence 99999999999998 5777776553 257999999999
Q ss_pred CCCCC-----------------hhhHHHHHHHhC-CcEEEEecc-chHHHHHHhhhh
Q psy2970 173 RDLPN-----------------ALDEKELIDRIM-IDFWITLTL-LIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~-----------------~~e~~~l~~~~~-~~~~etSAk-~~~~~~~~l~~i 210 (329)
+|+.+ ..++++++++++ .+++++||+ ++.+.+++++.+
T Consensus 142 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l 198 (205)
T 1gwn_A 142 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198 (205)
T ss_dssp GGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHH
T ss_pred hhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHH
Confidence 99963 145778899988 699999999 577777776654
No 71
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.93 E-value=2.9e-25 Score=188.02 Aligned_cols=152 Identities=20% Similarity=0.342 Sum_probs=124.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.+.+||+++|++|||||||++++.++.+...+.||++.++.. ++++.+.+.+|||||+++++..+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 457999999999999999999999999887888888876542 3556689999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC---cCCCCcEEEEE
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP---QLIGIPILVLG 170 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~---~~~~iPIiLVg 170 (329)
+|||++++.+++.+..|+.++.... ...++|+++|+
T Consensus 85 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~ 123 (177)
T 1wms_A 85 -----------------------------------------LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123 (177)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEE
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEE
Confidence 9999999999999988888776532 23678999999
Q ss_pred EcCCCCCh----hhHHHHHH-HhCCcEEEEeccchHHHHHHhhhh
Q psy2970 171 NKRDLPNA----LDEKELID-RIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 171 NK~Dl~~~----~e~~~l~~-~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
||+|+.+. .+++++++ ..+.+++++||+++.+++++++.+
T Consensus 124 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 168 (177)
T 1wms_A 124 NKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 168 (177)
T ss_dssp ECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHH
T ss_pred ECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHH
Confidence 99999642 55777777 567899999999977777776654
No 72
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=195.85 Aligned_cols=156 Identities=21% Similarity=0.338 Sum_probs=118.3
Q ss_pred HhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhc
Q psy2970 13 KSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRG 88 (329)
Q Consensus 13 ~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ 88 (329)
++...++.+||+++|++|||||||++++.++.+...+.+|++.++. .++++.+.+.+|||||++++...+..+++.
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 3444567899999999999999999999999987777888886543 246667899999999999999999999999
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+|+++ +|||++++.+++.+..|+..+.+. ...++|++|
T Consensus 101 ~d~ii-----------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piil 138 (199)
T 2p5s_A 101 ADGVL-----------------------------------------LLYDVTCEKSFLNIREWVDMIEDA-AHETVPIML 138 (199)
T ss_dssp CSEEE-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHH-C---CCEEE
T ss_pred CCEEE-----------------------------------------EEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEE
Confidence 99999 999999999999999888877553 235799999
Q ss_pred EEEcCCCCC-----------hhhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 169 LGNKRDLPN-----------ALDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 169 VgNK~Dl~~-----------~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+||+|+.+ ..++++++++++++++++||+++.++++++..+
T Consensus 139 v~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l 191 (199)
T 2p5s_A 139 VGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHL 191 (199)
T ss_dssp EEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 999999952 245778899999999999999977777766554
No 73
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.93 E-value=2.3e-25 Score=193.96 Aligned_cols=152 Identities=16% Similarity=0.211 Sum_probs=121.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
..+.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||+++++.++..+++++|+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 4568999999999999999999999999888888998877643 3556688999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+|||++++++|+.+. .|+..+... ..++|++||+||
T Consensus 97 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK 133 (201)
T 2q3h_A 97 -----------------------------------------LCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQ 133 (201)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEEC
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 999999999999997 677777654 248999999999
Q ss_pred CCCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .++.++++.++. +++++||+++.+.+++++.+.
T Consensus 134 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 190 (201)
T 2q3h_A 134 SDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190 (201)
T ss_dssp GGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHH
Confidence 998641 357788889997 899999999777777776553
No 74
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.93 E-value=4.3e-25 Score=190.21 Aligned_cols=152 Identities=20% Similarity=0.294 Sum_probs=120.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+++||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++...+..+++.+|+++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i-- 97 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL-- 97 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE--
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE--
Confidence 56899999999999999999999998887778888766643 4566788999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++.+++.+..|+..+.......++|+++|+||+|+
T Consensus 98 ---------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 138 (190)
T 3con_A 98 ---------------------------------------CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138 (190)
T ss_dssp ---------------------------------------EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred ---------------------------------------EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcC
Confidence 99999999999999988888766433457999999999998
Q ss_pred CCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+. .++++++++++++++++||+++.+.+++++.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 178 (190)
T 3con_A 139 PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV 178 (190)
T ss_dssp SCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 752 568889999999999999999777777776553
No 75
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.93 E-value=1.5e-25 Score=196.93 Aligned_cols=150 Identities=21% Similarity=0.280 Sum_probs=127.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||+++++.++..+++++|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i- 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV- 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE-
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE-
Confidence 467999999999999999999999999988888999877653 4566789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+. .|+..+... ..++|++||+||+
T Consensus 86 ----------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 123 (212)
T 2j0v_A 86 ----------------------------------------LAFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKL 123 (212)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECH
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCH
Confidence 999999999999987 677777553 2479999999999
Q ss_pred CCCCh-------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .++++++++++. +++++||+++.+.+++++.+
T Consensus 124 Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 174 (212)
T 2j0v_A 124 DLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTA 174 (212)
T ss_dssp HHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHH
Confidence 98543 456788899996 99999999977777777655
No 76
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.93 E-value=2.1e-25 Score=189.97 Aligned_cols=150 Identities=18% Similarity=0.257 Sum_probs=127.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||+++++.++..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i- 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL- 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE-
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE-
Confidence 367999999999999999999999999888888888866542 4667789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++.+++... .|+..+.+. ..++|+++|+||+
T Consensus 82 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 119 (186)
T 1mh1_A 82 ----------------------------------------ICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKL 119 (186)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECH
T ss_pred ----------------------------------------EEEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcc
Confidence 999999999999987 577666553 2489999999999
Q ss_pred CCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .++.+++++++. +++++||+++.+.+++++.+
T Consensus 120 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 174 (186)
T 1mh1_A 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174 (186)
T ss_dssp HHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred cccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHH
Confidence 98642 346678888887 99999999977777777655
No 77
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=5.3e-26 Score=197.17 Aligned_cols=152 Identities=20% Similarity=0.377 Sum_probs=131.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||++++.++.+...+.+|++.++. .++.+.+.+.+|||||++.+..++..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 45799999999999999999999999988777788775544 24667899999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+..|+..+... ...++|++||+||+
T Consensus 101 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~ 138 (191)
T 3dz8_A 101 -----------------------------------------LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKC 138 (191)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECT
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECC
Confidence 999999999999999998888663 24689999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .+++++++.++++++++||+++.+++++++.+.
T Consensus 139 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (191)
T 3dz8_A 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181 (191)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred CCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99653 567889999999999999999777777776553
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=4.2e-25 Score=190.84 Aligned_cols=153 Identities=18% Similarity=0.273 Sum_probs=129.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.||++..+.. ++...+.+.+|||||++++..++..+++.+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i- 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI- 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE-
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE-
Confidence 467999999999999999999999999887788888876654 3566789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC-cCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP-QLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~-~~~~iPIiLVgNK~ 173 (329)
+|||++++.+++.+..|+..+.+.. ...++|+++|+||+
T Consensus 85 ----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~ 124 (199)
T 2gf0_A 85 ----------------------------------------LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKC 124 (199)
T ss_dssp ----------------------------------------EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECT
T ss_pred ----------------------------------------EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 9999999999998888776665421 13578999999999
Q ss_pred CCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++.++++.++++++++||+++.+.+++++.+.
T Consensus 125 Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (199)
T 2gf0_A 125 DETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELL 166 (199)
T ss_dssp TCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Confidence 99753 557788899999999999999777777776553
No 79
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.93 E-value=1.9e-25 Score=196.00 Aligned_cols=153 Identities=22% Similarity=0.333 Sum_probs=120.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
.++.+||+++|++|||||||++++.++.+...+.+|++.++.. +++..+.+.+|||||++++..++..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 3567999999999999999999999999887788888865432 345568999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+.++.... ..++|+++|+||
T Consensus 102 i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK 139 (200)
T 2o52_A 102 L-----------------------------------------LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNK 139 (200)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEEC
Confidence 9 9999999999999999988886542 267999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .++.+++++.+++++++||+++.+++++++.+.
T Consensus 140 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 183 (200)
T 2o52_A 140 KDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA 183 (200)
T ss_dssp GGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred CCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999643 467788999999999999999877777776553
No 80
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.92 E-value=4.1e-25 Score=187.13 Aligned_cols=154 Identities=21% Similarity=0.360 Sum_probs=115.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--Ee--e-CceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KI--T-KGNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i--~-~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
.++.+||+++|++|||||||++++.++.+...+.||++.++. .+ + .....+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 356799999999999999999999999988788888875543 23 3 456899999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC---cCCCCcEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP---QLIGIPILV 168 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~---~~~~iPIiL 168 (329)
++ +|||++++.+++.+..|+.++.... ...++|+++
T Consensus 85 ~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~il 123 (182)
T 1ky3_A 85 CV-----------------------------------------LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123 (182)
T ss_dssp EE-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEE
T ss_pred EE-----------------------------------------EEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEE
Confidence 99 9999999999999999988876532 236799999
Q ss_pred EEEcCCCCCh------hhHHHHHH-HhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 169 LGNKRDLPNA------LDEKELID-RIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 169 VgNK~Dl~~~------~e~~~l~~-~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+||+|+.+. .+++++++ ..+.+++++||+++.+.+++++.+.
T Consensus 124 v~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (182)
T 1ky3_A 124 LGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIA 173 (182)
T ss_dssp EEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHH
T ss_pred EEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHH
Confidence 9999999542 45677777 4568999999999877777776553
No 81
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.92 E-value=3.7e-25 Score=196.44 Aligned_cols=151 Identities=19% Similarity=0.293 Sum_probs=108.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||++++..++..+++++|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i- 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL- 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE-
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE-
Confidence 467999999999999999999999999887888888776542 4567789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++.+|+.+. .|+..+.+. ..++|++||+||+
T Consensus 111 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 148 (214)
T 2j1l_A 111 ----------------------------------------LCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKT 148 (214)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECG
T ss_pred ----------------------------------------EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECh
Confidence 999999999999987 577776543 3579999999999
Q ss_pred CCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++.+++++++. +++++||+++.+.+++++.+.
T Consensus 149 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~ 204 (214)
T 2j1l_A 149 DLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204 (214)
T ss_dssp GGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHH
T ss_pred hhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 99754 245788889997 899999999777777776553
No 82
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.92 E-value=5.1e-25 Score=191.81 Aligned_cols=152 Identities=17% Similarity=0.333 Sum_probs=121.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
....+||+++|++|||||||++++.++.+...+.+|++.++. . ++++.+.+.+|||||++++..++..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 345799999999999999999999999887777788876553 2 345668999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+..+... ...++|++||+||
T Consensus 103 i-----------------------------------------lV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK 140 (192)
T 2il1_A 103 I-----------------------------------------LVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNK 140 (192)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEEC
Confidence 9 999999999999998887776543 2357999999999
Q ss_pred CCCCCh-----hhHHHHHHHh-CCcEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNA-----LDEKELIDRI-MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~-~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+.+. .+++++++++ +.+++++||+++.+.+++++.+
T Consensus 141 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 184 (192)
T 2il1_A 141 LDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 184 (192)
T ss_dssp GGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHH
Confidence 999653 4567788875 7899999999977777777654
No 83
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=9.7e-25 Score=190.84 Aligned_cols=153 Identities=22% Similarity=0.397 Sum_probs=128.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
..+.+||+++|++|||||||++++.++++...+.||++.++. . +++..+.+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 456799999999999999999999999988778888886554 2 345568999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+..+.... ..++|+++|+||
T Consensus 97 i-----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK 134 (213)
T 3cph_A 97 I-----------------------------------------LVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNK 134 (213)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEEC
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEEC
Confidence 9 9999999999999999988886642 247899999999
Q ss_pred CCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+... .+.++++++++++++++||+++..++++++.+.
T Consensus 135 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 177 (213)
T 3cph_A 135 SDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 177 (213)
T ss_dssp TTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHH
T ss_pred CCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999543 567788999999999999999776676665553
No 84
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.92 E-value=1.9e-25 Score=193.89 Aligned_cols=153 Identities=16% Similarity=0.261 Sum_probs=95.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCceeeeEE--Ee--eCc--eEEEEEEecCCCccccchHHHHhhcc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG--QFSQDMIPTVGFNMR--KI--TKG--NVTIKVWDIGGQPRFRSMWERYCRGV 89 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~--~~~~~~~pTig~~~~--~i--~~~--~~~l~I~DtpG~e~~~~~~~~~~~~a 89 (329)
++.+||+++|++|||||||++++.++ .+...+.+|++.++. .+ ++. .+.+.+|||||++++..++..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999998 777788889885443 33 344 78999999999999999999999999
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc--CCCCcEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ--LIGIPIL 167 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~--~~~iPIi 167 (329)
|+++ +|||++++.+|+.+..|+..+..... ..++|++
T Consensus 98 d~~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii 136 (208)
T 2yc2_C 98 YYAI-----------------------------------------LVFDVSSMESFESCKAWFELLKSARPDRERPLRAV 136 (208)
T ss_dssp CEEE-----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEE
T ss_pred cEEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEE
Confidence 9999 99999999999999999998876533 2589999
Q ss_pred EEEEcCCCCC-h-----hhHHHHHHHhCCcEEEEeccc-hHHHHHHhhhhc
Q psy2970 168 VLGNKRDLPN-A-----LDEKELIDRIMIDFWITLTLL-IRWCESFLHHFG 211 (329)
Q Consensus 168 LVgNK~Dl~~-~-----~e~~~l~~~~~~~~~etSAk~-~~~~~~~l~~i~ 211 (329)
||+||+|+.+ . .++++++++++++++++||++ +.+.+++++.+.
T Consensus 137 lv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~ 187 (208)
T 2yc2_C 137 LVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187 (208)
T ss_dssp EEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHH
T ss_pred EEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHH
Confidence 9999999976 2 567889999999999999999 888888776654
No 85
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.92 E-value=9.5e-25 Score=190.09 Aligned_cols=153 Identities=23% Similarity=0.362 Sum_probs=128.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
++.+||+++|++|||||||++++.++.+...+.+|++.++.. +++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 567999999999999999999999999888888888866543 3456789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC---cCCCCcEEEEE
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP---QLIGIPILVLG 170 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~---~~~~iPIiLVg 170 (329)
+|||++++.+++.+..|+.++.... ...++|+++|+
T Consensus 86 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~ 124 (207)
T 1vg8_A 86 -----------------------------------------LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 124 (207)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEE
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 9999999999999988888776532 12578999999
Q ss_pred EcCCCCCh----hhHHHHHH-HhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 171 NKRDLPNA----LDEKELID-RIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 171 NK~Dl~~~----~e~~~l~~-~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+|+.+. .+++++++ ..+++++++||+++.+.+++++.+.
T Consensus 125 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 170 (207)
T 1vg8_A 125 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170 (207)
T ss_dssp ECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHH
T ss_pred ECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHH
Confidence 99999743 45666776 6678999999999777777776653
No 86
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.92 E-value=1.1e-24 Score=192.16 Aligned_cols=152 Identities=17% Similarity=0.234 Sum_probs=125.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++..++..+++++|+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 5678999999999999999999999999988888888876653 4667788999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+|||++++.+++.+. .|+..+... ..++|+++|+||
T Consensus 107 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK 143 (204)
T 4gzl_A 107 -----------------------------------------ICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTK 143 (204)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEEC
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEec
Confidence 999999999999997 666666544 267999999999
Q ss_pred CCCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .++.+++++++. +++++||+++.+++++++.+.
T Consensus 144 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 200 (204)
T 4gzl_A 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200 (204)
T ss_dssp HHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred hhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHH
Confidence 998653 346678888886 599999999888888776653
No 87
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.92 E-value=1.1e-24 Score=190.91 Aligned_cols=151 Identities=21% Similarity=0.302 Sum_probs=127.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..++||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i- 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL- 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE-
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE-
Confidence 457999999999999999999999999888888888876632 4566789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+ ..|+..+.+. ..++|+++|+||+
T Consensus 102 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 139 (201)
T 2gco_A 102 ----------------------------------------MCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKK 139 (201)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECG
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecH
Confidence 99999999999998 4566555443 2579999999999
Q ss_pred CCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++.+++++++. +++++||+++.+++++++.+.
T Consensus 140 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~ 195 (201)
T 2gco_A 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMAT 195 (201)
T ss_dssp GGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHH
Confidence 99653 346678888888 899999999877787776553
No 88
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.5e-25 Score=195.74 Aligned_cols=151 Identities=21% Similarity=0.357 Sum_probs=121.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||+++|.++.+...+.||++.++.. +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 456999999999999999999999999887778888865542 3455689999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++.+|+.+..|+.++.... ..++|++||+||+
T Consensus 91 -----------------------------------------lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~ 128 (223)
T 3cpj_B 91 -----------------------------------------IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKS 128 (223)
T ss_dssp -----------------------------------------EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCG
T ss_pred -----------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECc
Confidence 9999999999999999998886542 3578999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .++.+++++.+++++++||+++.+.+++++.+
T Consensus 129 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 129 DLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170 (223)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99653 56788899999999999999977677766554
No 89
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.8e-24 Score=194.99 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=120.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCceeeeEE----EeeCceEEEEEEecCCCcc-ccchHHHHhhccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQ--FSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPR-FRSMWERYCRGVN 90 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~--~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~-~~~~~~~~~~~ad 90 (329)
...+||+++|++|||||||+++|.+.. +...+ ++++.++. .+++..+.+.+|||+|++. ++.+...+++.++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 456999999999999999999999644 33333 34554432 2466778899999999987 4556677788899
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
+++ +|||++++++|+.+..|+..+.+.....++|++|||
T Consensus 114 ~~i-----------------------------------------lVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVg 152 (211)
T 2g3y_A 114 AYL-----------------------------------------IVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 152 (211)
T ss_dssp EEE-----------------------------------------EEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEE
T ss_pred EEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 999 999999999999999998887654334689999999
Q ss_pred EcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 171 NKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 171 NK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+|+.+. .+++.+++.++++|+||||+++.+++++++.+.
T Consensus 153 NK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~ 198 (211)
T 2g3y_A 153 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 198 (211)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999643 456678889999999999999777777776653
No 90
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=3.5e-24 Score=188.63 Aligned_cols=151 Identities=21% Similarity=0.290 Sum_probs=120.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+++||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i- 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL- 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE-
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE-
Confidence 457899999999999999999999999887888888876642 4566789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+ ..|+..+.+. ..++|+++|+||+
T Consensus 102 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 139 (207)
T 2fv8_A 102 ----------------------------------------MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKK 139 (207)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECG
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEch
Confidence 99999999999998 5566666443 3579999999999
Q ss_pred CCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++.+++++++. +++++||+++.+++++++.+.
T Consensus 140 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~ 195 (207)
T 2fv8_A 140 DLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETAT 195 (207)
T ss_dssp GGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred hhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99643 245677888887 899999999877887776653
No 91
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.91 E-value=2.7e-24 Score=205.86 Aligned_cols=153 Identities=31% Similarity=0.597 Sum_probs=129.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
.++++||+|+|++|||||||+++|.++.+... .||++..+..++.+.+.+.||||||++.+..++..+++.+|+++
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi--- 237 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI--- 237 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEE---
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEE---
Confidence 45678999999999999999999999988644 47999988888889999999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..++.+++......++|++||+||+|+.
T Consensus 238 --------------------------------------lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 238 --------------------------------------FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279 (329)
T ss_dssp --------------------------------------EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred --------------------------------------EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCC
Confidence 999999999999999999999887666789999999999999
Q ss_pred ChhhHHHHHHHhCC--------cEEEEeccchHHHHHHhhhhc
Q psy2970 177 NALDEKELIDRIMI--------DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~~e~~~l~~~~~~--------~~~etSAk~~~~~~~~l~~i~ 211 (329)
+..+.+++.++++. +++++||+++.+++++++.+.
T Consensus 280 ~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~ 322 (329)
T 3o47_A 280 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 322 (329)
T ss_dssp TCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred cccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHH
Confidence 87666777777653 589999999877787776553
No 92
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.91 E-value=4.6e-25 Score=195.75 Aligned_cols=151 Identities=23% Similarity=0.362 Sum_probs=128.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
....+||+++|++|||||||++++..+.+...+.+|.|.++.. ++.+.+.+.+|||||++.+..++..+++++|++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 4567999999999999999999988777666667777765543 456778999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+..+... ..++|+++|+||
T Consensus 92 i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK 128 (221)
T 3gj0_A 92 I-----------------------------------------IMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNK 128 (221)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHH--STTCCEEEEEEC
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 9 999999999999999999988765 358999999999
Q ss_pred CCCCCh---hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNA---LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~---~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+.+. .+..++++..+++++++||+++.+++++++.+
T Consensus 129 ~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 169 (221)
T 3gj0_A 129 VDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 169 (221)
T ss_dssp TTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHH
T ss_pred CccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999764 45667888999999999999966666665544
No 93
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.91 E-value=7e-24 Score=185.82 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=116.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCceeeeEE----EeeCceEEEEEEecCCCcc-ccchHHHHhhccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG--QFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPR-FRSMWERYCRGVN 90 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~--~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~-~~~~~~~~~~~ad 90 (329)
...+||+++|++|||||||+++|.+. .+...+ ++++.++. .+++..+.+.+|||+|++. ++.++..+++.++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 45799999999999999999999963 333333 34444432 2466778899999999876 5567788899999
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
+++ +|||++++++|+....|+..+.+.....++|+++|+
T Consensus 83 ~~i-----------------------------------------~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~ 121 (192)
T 2cjw_A 83 AYL-----------------------------------------IVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121 (192)
T ss_dssp EEE-----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred EEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEE
Confidence 999 999999999999999988877654334579999999
Q ss_pred EcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 171 NKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 171 NK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+|+.+. .+++.++..++++|+||||+++.+.+++++.+.
T Consensus 122 NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~ 167 (192)
T 2cjw_A 122 NKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIV 167 (192)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred echhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHH
Confidence 99999643 456677888999999999999777777776553
No 94
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.91 E-value=9.7e-25 Score=188.82 Aligned_cols=148 Identities=19% Similarity=0.308 Sum_probs=112.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCceeeeEEEe-------eCceEEEEEEecCCCccccchHHHHhhccc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG--QFSQDMIPTVGFNMRKI-------TKGNVTIKVWDIGGQPRFRSMWERYCRGVN 90 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~--~~~~~~~pTig~~~~~i-------~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad 90 (329)
++||+++|++|||||||++++.+. .+...+.||+|.++... +.+.+.+.+|||+|+++++.++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 45566789998887643 235678999999999999999999999999
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc-ccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~-~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
+++ +|||++++ .+++.+..|+.++... ..++|+++|
T Consensus 82 ~~i-----------------------------------------~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv 118 (184)
T 2zej_A 82 LYL-----------------------------------------AVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILV 118 (184)
T ss_dssp EEE-----------------------------------------EEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEE
T ss_pred EEE-----------------------------------------EEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEE
Confidence 999 99999997 5799999999888654 247899999
Q ss_pred EEcCCCCChhh--------HHHHHHHhCCc----EEEEeccch-HHHHHHhhhh
Q psy2970 170 GNKRDLPNALD--------EKELIDRIMID----FWITLTLLI-RWCESFLHHF 210 (329)
Q Consensus 170 gNK~Dl~~~~e--------~~~l~~~~~~~----~~etSAk~~-~~~~~~l~~i 210 (329)
|||+|+.++.. .++++++++++ ++++||++. +..+.+++.+
T Consensus 119 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i 172 (184)
T 2zej_A 119 GTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTI 172 (184)
T ss_dssp EECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHH
T ss_pred EECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHH
Confidence 99999987633 24455556776 999999997 4777777655
No 95
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.91 E-value=1.9e-25 Score=195.20 Aligned_cols=152 Identities=24% Similarity=0.413 Sum_probs=122.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.+.+||+++|++|||||||++++.++.+...+.+|++.++. . +++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 45699999999999999999999999887777777775543 2 4556689999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+..|+..+... ...++|++||+||+
T Consensus 111 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~ 148 (199)
T 3l0i_B 111 -----------------------------------------VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKC 148 (199)
T ss_dssp -----------------------------------------ECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCS
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECc
Confidence 999999999999999998888554 33589999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .+++++++.++++++++||+++.+++++++.+.
T Consensus 149 Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~ 191 (199)
T 3l0i_B 149 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 191 (199)
T ss_dssp SCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHT
T ss_pred cCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99754 467889999999999999999888888887765
No 96
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.91 E-value=1.4e-23 Score=209.52 Aligned_cols=153 Identities=33% Similarity=0.603 Sum_probs=136.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
.++++||+++|.+|||||||++++.++++. .+.||++..+..++.+++++.+|||||++.++.++..+++++|+++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i--- 394 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI--- 394 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEE---
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEE---
Confidence 356799999999999999999999998865 5678999999999999999999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+.++++.....++|++||+||+|+.
T Consensus 395 --------------------------------------~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 395 --------------------------------------FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436 (497)
T ss_dssp --------------------------------------EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS
T ss_pred --------------------------------------EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC
Confidence 999999999999999999999887666789999999999998
Q ss_pred ChhhHHHHHHHhCC--------cEEEEeccchHHHHHHhhhhc
Q psy2970 177 NALDEKELIDRIMI--------DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~~e~~~l~~~~~~--------~~~etSAk~~~~~~~~l~~i~ 211 (329)
+....+++.+.++. +++++||+++.+++++++.+.
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 479 (497)
T 3lvq_E 437 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 479 (497)
T ss_dssp SCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred cCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHH
Confidence 87666677777664 499999999888888876664
No 97
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.91 E-value=2e-24 Score=190.60 Aligned_cols=151 Identities=19% Similarity=0.260 Sum_probs=124.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe-----eCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI-----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i-----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
...+||+++|++|||||||++++.++.+...+.+|++...... .+..+.+.+|||||++++..++..+++.+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 4679999999999999999999999988877778887665542 22338899999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+..+.... ..++|+++|+||
T Consensus 89 i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK 126 (218)
T 4djt_A 89 I-----------------------------------------LFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANK 126 (218)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEEC
T ss_pred E-----------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEEC
Confidence 9 9999999999999998888876542 346899999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+.+. .+..++++..+++++++||+++.+++++++.+
T Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 169 (218)
T 4djt_A 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL 169 (218)
T ss_dssp TTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHH
T ss_pred CCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Confidence 999764 34667777888999999999966666666554
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.90 E-value=3.1e-23 Score=181.09 Aligned_cols=147 Identities=21% Similarity=0.285 Sum_probs=112.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE------Ee-eCceEEEEEEecCCCccccchH---HHHh
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR------KI-TKGNVTIKVWDIGGQPRFRSMW---ERYC 86 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~------~i-~~~~~~l~I~DtpG~e~~~~~~---~~~~ 86 (329)
.++.+||+++|++|||||||++++.+.... . +|++..+. .+ +++.+.+++|||||++++.... ..++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 467899999999999999999988775332 2 33332221 23 2677899999999999987766 8999
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc--ccHHHHHHHHHHHHhCCcCCCC
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT--DKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~--~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++|+++ +|||++++ ++++.+..|+.++... ..++
T Consensus 94 ~~~~~~i-----------------------------------------~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~ 130 (196)
T 3llu_A 94 RGTGALI-----------------------------------------YVIDAQDDYMEALTRLHITVSKAYKV--NPDM 130 (196)
T ss_dssp HTCSEEE-----------------------------------------EEEETTSCCHHHHHHHHHHHHHHHHH--CTTC
T ss_pred ccCCEEE-----------------------------------------EEEECCCchHHHHHHHHHHHHHHHhc--CCCC
Confidence 9999999 99999997 6777777777776432 3589
Q ss_pred cEEEEEEcCCCCCh------------hhHHHHHH----HhCCcEEEEeccchHHHHHHhhhh
Q psy2970 165 PILVLGNKRDLPNA------------LDEKELID----RIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 165 PIiLVgNK~Dl~~~------------~e~~~l~~----~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|++|||||+|+.+. .+.+++++ .++++|++|||++ .++++++..+
T Consensus 131 piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l 191 (196)
T 3llu_A 131 NFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKV 191 (196)
T ss_dssp EEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHH
T ss_pred cEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHH
Confidence 99999999998763 23566777 6788999999999 7777777654
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.83 E-value=2.2e-25 Score=195.14 Aligned_cols=154 Identities=18% Similarity=0.255 Sum_probs=127.9
Q ss_pred cCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 15 LFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 15 ~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
.+.++.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++...+..+++++|+
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 345678999999999999999999999998887788888766543 45667888999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVg 170 (329)
++ +|||++++.+++... .|+..+... ..++|+++|+
T Consensus 105 ii-----------------------------------------lv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~ 141 (204)
T 3th5_A 105 FL-----------------------------------------ICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVG 141 (204)
Confidence 99 999999999999987 566655443 2379999999
Q ss_pred EcCCCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 171 NKRDLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 171 NK~Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+|+.+. .++.+++++++. +++++||+++.+.+++++.+.
T Consensus 142 NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~ 200 (204)
T 3th5_A 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200 (204)
Confidence 99999653 335567778887 899999999888888776553
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.89 E-value=6.2e-23 Score=180.51 Aligned_cols=119 Identities=20% Similarity=0.293 Sum_probs=93.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCc---eEEEEEEecCCCccccc-hHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKG---NVTIKVWDIGGQPRFRS-MWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~---~~~l~I~DtpG~e~~~~-~~~~~~~~ad~iI 93 (329)
++.+||+++|++|||||||++++.++.+...+.++ +..+..+..+ .+.+.+|||||+++++. ++..+++++|+++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 56799999999999999999999999887666544 4444444333 78999999999999988 8888999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc-cHHHHHHHHHHHHhC--CcCCCCcEEEEE
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD-KLEASRNELHALIEK--PQLIGIPILVLG 170 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~-S~~~~~~~l~~i~~~--~~~~~iPIiLVg 170 (329)
+|||+++.. ++.....++.+++.. ....++|++||+
T Consensus 84 -----------------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 122 (214)
T 2fh5_B 84 -----------------------------------------FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC 122 (214)
T ss_dssp -----------------------------------------EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEE
T ss_pred -----------------------------------------EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEE
Confidence 999999854 466776766665443 223579999999
Q ss_pred EcCCCCCh
Q psy2970 171 NKRDLPNA 178 (329)
Q Consensus 171 NK~Dl~~~ 178 (329)
||+|+.+.
T Consensus 123 nK~Dl~~~ 130 (214)
T 2fh5_B 123 NKQDIAMA 130 (214)
T ss_dssp ECTTSTTC
T ss_pred ECCCCCCc
Confidence 99999765
No 101
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.89 E-value=1.4e-23 Score=202.80 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=114.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCceeeeEEEeeCceEEEEEEecCCCccccc---hHHHHhhccceeEee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQ---DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS---MWERYCRGVNAIVWT 95 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~---~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~---~~~~~~~~ad~iI~~ 95 (329)
||+++|++|||||||++++.++.++. .+.||+|.++..++ ..++++|||||||++|+. .+..|+++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~I-- 77 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALV-- 77 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEE--
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEE--
Confidence 69999999999999999988765432 36799999887774 458999999999999974 4689999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc--ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT--DKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~--~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++ +.++.+..|+.++.+. .+++|++|||||+
T Consensus 78 ---------------------------------------lV~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~ 116 (331)
T 3r7w_B 78 ---------------------------------------YVIDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKV 116 (331)
T ss_dssp ---------------------------------------EECCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCC
T ss_pred ---------------------------------------EEEECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECc
Confidence 99999997 2233333334433322 3689999999999
Q ss_pred CCCCh------------hhHHHHHHH----hCCcEEEEeccchHHHHHHhhhhcCC
Q psy2970 174 DLPNA------------LDEKELIDR----IMIDFWITLTLLIRWCESFLHHFGSH 213 (329)
Q Consensus 174 Dl~~~------------~e~~~l~~~----~~~~~~etSAk~~~~~~~~l~~i~~~ 213 (329)
|+.++ .++++++++ ++++|+||||++.++.++|...+...
T Consensus 117 DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 117 DGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKL 172 (331)
T ss_dssp CSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSSSHHHHHHHHHHTTS
T ss_pred ccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCCCcHHHHHHHHHHHH
Confidence 99763 224556664 67899999999988888877666543
No 102
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.89 E-value=1.9e-22 Score=190.91 Aligned_cols=153 Identities=22% Similarity=0.217 Sum_probs=124.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCC--C-CCCCCceeeeEEEee-CceEEEEEEecCCCccc-----cchHHHHhhcc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQF--S-QDMIPTVGFNMRKIT-KGNVTIKVWDIGGQPRF-----RSMWERYCRGV 89 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~--~-~~~~pTig~~~~~i~-~~~~~l~I~DtpG~e~~-----~~~~~~~~~~a 89 (329)
..+||+++|++|||||||+++++++.. . ..+.+|++..+..+. .+.+.+.+|||||++++ ..++..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 468999999999999999999998743 2 367889998887765 35899999999999998 78889999999
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC-CcCCCCcEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK-PQLIGIPILV 168 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~-~~~~~iPIiL 168 (329)
|+++ +|||++++++|+++..|...+.+. ...+++|+++
T Consensus 82 d~vi-----------------------------------------~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piil 120 (307)
T 3r7w_A 82 QVLI-----------------------------------------HVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFV 120 (307)
T ss_dssp SEEE-----------------------------------------EEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CEEE-----------------------------------------EEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 9999 999999999999887664433221 1135799999
Q ss_pred EEEcCCCCCh-----------hhHHHHHHHhC---CcEEEEeccchHHHHHHhhhhcC
Q psy2970 169 LGNKRDLPNA-----------LDEKELIDRIM---IDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 169 VgNK~Dl~~~-----------~e~~~l~~~~~---~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
||||+|+.++ .++++++++++ +++++|||++.++.+.|...+..
T Consensus 121 v~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCS 178 (307)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecCChHHHHHHHHHHH
Confidence 9999999872 34667888887 78999999997777777666553
No 103
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.89 E-value=9.1e-23 Score=190.15 Aligned_cols=150 Identities=18% Similarity=0.252 Sum_probs=127.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
++.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++...+..+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i- 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL- 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE-
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE-
Confidence 567999999999999999999999999888888998876653 4566788889999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++.+|+.+. .|+..+... ..++|+++|+||+
T Consensus 232 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~ 269 (332)
T 2wkq_A 232 ----------------------------------------ICFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKL 269 (332)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECH
T ss_pred ----------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEch
Confidence 999999999999987 566666543 2389999999999
Q ss_pred CCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .++.++++.+++ +++++||+++.+.+++++.+
T Consensus 270 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 324 (332)
T 2wkq_A 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 324 (332)
T ss_dssp HHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred hcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHH
Confidence 98542 356778888997 99999999987777777654
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.88 E-value=2.6e-22 Score=170.69 Aligned_cols=144 Identities=20% Similarity=0.214 Sum_probs=108.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceee--eEEEeeCceEEEEEEecCCCcccc------chHHHHhh--c
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF--NMRKITKGNVTIKVWDIGGQPRFR------SMWERYCR--G 88 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~--~~~~i~~~~~~l~I~DtpG~e~~~------~~~~~~~~--~ 88 (329)
++++|+++|++|||||||++++.+..+.....|+++. ....+..++..+.+|||||++++. .+...+++ +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 3689999999999999999999998765444554443 233455556889999999999875 33455665 7
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+++++ +|+|+++.+ ....|+.++.+ .++|+++
T Consensus 82 ~~~~i-----------------------------------------~v~D~~~~~---~~~~~~~~~~~----~~~p~il 113 (165)
T 2wji_A 82 PDLVV-----------------------------------------NIVDATALE---RNLYLTLQLME----MGANLLL 113 (165)
T ss_dssp CSEEE-----------------------------------------EEEETTCHH---HHHHHHHHHHH----TTCCEEE
T ss_pred CCEEE-----------------------------------------EEecCCchh---HhHHHHHHHHh----cCCCEEE
Confidence 88888 999998754 34456666644 3689999
Q ss_pred EEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 169 LGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 169 VgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+||+|+... .++++++++++++++++||+++.+.+++++.+
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l 159 (165)
T 2wji_A 114 ALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAI 159 (165)
T ss_dssp EEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHH
T ss_pred EEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHH
Confidence 9999998643 35788999999999999999987778777655
No 105
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.88 E-value=6.2e-22 Score=173.17 Aligned_cols=152 Identities=21% Similarity=0.349 Sum_probs=125.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||++++.+..+...+.||++.++. .+++..+.+.+|||+|+++++.++..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 34689999999999999999999999988777888775543 24566788999999999999988888999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|+|+++..+++++..|+.++... ...+.|+++|+||+
T Consensus 83 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~ 120 (199)
T 2f9l_A 83 -----------------------------------------LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKS 120 (199)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECT
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECc
Confidence 999999999999888888776543 23578999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++.+++++.++.++++||++....+++++.+.
T Consensus 121 Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 121 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99753 457889999999999999999777777776554
No 106
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.87 E-value=1.6e-22 Score=173.02 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=114.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCC-----------CccccchHHHHhhc-
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGG-----------QPRFRSMWERYCRG- 88 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG-----------~e~~~~~~~~~~~~- 88 (329)
+||+++|++|||||||++++.++.+...+.|+++.....+... .+.+||||| ++.++..+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999999998877777766554444333 688999999 66777778888887
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHH--------HHhCC
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHA--------LIEKP 159 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~--------i~~~~ 159 (329)
+++++ +++|+.|.++++++ ..|... +....
T Consensus 80 ~~~~~-----------------------------------------~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (190)
T 2cxx_A 80 AKNID-----------------------------------------VAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL 118 (190)
T ss_dssp GGGCC-----------------------------------------EEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred hccCC-----------------------------------------EEEEEEcchhhhhHHHhhhccCccHHHHHHHHHH
Confidence 88888 78888888888776 334321 22222
Q ss_pred cCCCCcEEEEEEcCCCCCh--hhHHHHHHHhCCc-------EEEEeccchHHHHHHhhhhc
Q psy2970 160 QLIGIPILVLGNKRDLPNA--LDEKELIDRIMID-------FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~--~e~~~l~~~~~~~-------~~etSAk~~~~~~~~l~~i~ 211 (329)
...++|+++|+||+|+.+. .+.++++++++.+ ++++||+++.+.+++++.+.
T Consensus 119 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 179 (190)
T 2cxx_A 119 RELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 179 (190)
T ss_dssp HHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred HhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHH
Confidence 2357999999999999875 4688899999875 69999999877777776553
No 107
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.87 E-value=7.7e-22 Score=167.06 Aligned_cols=149 Identities=18% Similarity=0.183 Sum_probs=111.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeE--EEeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~--~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.++.++|+++|++|||||||++++.++.+...+.++++.++ ..+..++..+.+|||||++++..++..++..+|+++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i- 83 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI- 83 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE-
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE-
Confidence 46789999999999999999999999988766666655433 335556678899999999999998888889999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|+|++++... .....+..+. ..++|+++|+||+|
T Consensus 84 ----------------------------------------~v~d~~~~~~~-~~~~~l~~~~----~~~~p~ilv~nK~D 118 (178)
T 2lkc_A 84 ----------------------------------------LVVAADDGVMP-QTVEAINHAK----AANVPIIVAINKMD 118 (178)
T ss_dssp ----------------------------------------EEEETTCCCCH-HHHHHHHHHG----GGSCCEEEEEETTT
T ss_pred ----------------------------------------EEEECCCCCcH-HHHHHHHHHH----hCCCCEEEEEECcc
Confidence 99999885332 2223333332 24789999999999
Q ss_pred CCCh--hhHHHHHHHhC---------CcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA--LDEKELIDRIM---------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~--~e~~~l~~~~~---------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .+..+..++.+ ++++++||+++.+.+++++.+.
T Consensus 119 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 166 (178)
T 2lkc_A 119 KPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMIL 166 (178)
T ss_dssp SSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHH
Confidence 9864 22222222222 4899999999888888776653
No 108
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.87 E-value=1.3e-22 Score=186.76 Aligned_cols=153 Identities=12% Similarity=0.101 Sum_probs=115.8
Q ss_pred CCCceEEEEEcCC---------CCCHHHHHHHHHc---CCCCCCCCCce-eeeEEE------------------eeCceE
Q psy2970 17 WKEEMELTLVGLQ---------CSGKTTFVNVIAS---GQFSQDMIPTV-GFNMRK------------------ITKGNV 65 (329)
Q Consensus 17 ~~k~lkIlllG~~---------gvGKSSLin~l~~---~~~~~~~~pTi-g~~~~~------------------i~~~~~ 65 (329)
..+.+||+++|++ |||||||+++|.+ +.+...+.||+ +.++.. +++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3467999999999 9999999999999 56666777776 444321 345678
Q ss_pred EEEEEe-----------------------cCCCccccchHHHHhh---------------------ccceeEeecceeee
Q psy2970 66 TIKVWD-----------------------IGGQPRFRSMWERYCR---------------------GVNAIVWTGGLYIV 101 (329)
Q Consensus 66 ~l~I~D-----------------------tpG~e~~~~~~~~~~~---------------------~ad~iI~~~~~~~~ 101 (329)
.++||| ++|+++++.++..+++ ++|+++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi-------- 167 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFL-------- 167 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEE--------
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEE--------
Confidence 899999 7777777777777776 677777
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc--ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT--DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA- 178 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~--~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~- 178 (329)
+|||++++ ++|+.+..|+.++.+.....++|++||+||+|+.+.
T Consensus 168 ---------------------------------lV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~ 214 (255)
T 3c5h_A 168 ---------------------------------LGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214 (255)
T ss_dssp ---------------------------------EEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH
T ss_pred ---------------------------------EEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccH
Confidence 99999998 999999999988876423357999999999999765
Q ss_pred --hhHHHHHHH-hCCcEEEEeccchHHHHHHhhhh
Q psy2970 179 --LDEKELIDR-IMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 179 --~e~~~l~~~-~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.++++++++ .+++++++||+++.+.+++++.+
T Consensus 215 ~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 215 YIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp HHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence 345667766 47899999999977777777654
No 109
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.87 E-value=1.9e-21 Score=169.91 Aligned_cols=151 Identities=21% Similarity=0.349 Sum_probs=127.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...++|+++|++|||||||++++.+..+...+.||++.++.. +++..+.+.+||++|++++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 345899999999999999999999999887888998876542 4566778889999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|+|+++..+++++..|+.++.+. ...+.|+++++||+
T Consensus 107 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~ 144 (191)
T 1oix_A 107 -----------------------------------------LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKS 144 (191)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECG
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECc
Confidence 999999999998888888766542 23578999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .++.+++++.++.++++||++....+++++.+
T Consensus 145 Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 145 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186 (191)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99653 46788999999999999999977777777654
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=1.1e-21 Score=168.29 Aligned_cols=144 Identities=22% Similarity=0.228 Sum_probs=112.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceee--eEEEeeCceEEEEEEecCCCcccc------chHHHHhh--c
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF--NMRKITKGNVTIKVWDIGGQPRFR------SMWERYCR--G 88 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~--~~~~i~~~~~~l~I~DtpG~e~~~------~~~~~~~~--~ 88 (329)
+.++|+++|++|||||||++++.+..+.....|+++. ....+..++..+.+|||||++.+. .++..+++ .
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 5689999999999999999999987765444455443 334466667899999999999875 34566665 3
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+++++ +|+|.++ ++....|+.++.+ .++|+++
T Consensus 86 ~~~~i-----------------------------------------~v~d~~~---~~~~~~~~~~~~~----~~~piil 117 (188)
T 2wjg_A 86 PDLVV-----------------------------------------NIVDATA---LERNLYLTLQLME----MGANLLL 117 (188)
T ss_dssp CSEEE-----------------------------------------EEEEGGG---HHHHHHHHHHHHT----TTCCEEE
T ss_pred CCEEE-----------------------------------------EEecchh---HHHHHHHHHHHHh----cCCCEEE
Confidence 78777 9999875 5666677777654 4789999
Q ss_pred EEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 169 LGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 169 VgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+||+|+... .+.++++++++++++++||+++.+.+++++.+
T Consensus 118 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 163 (188)
T 2wjg_A 118 ALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAI 163 (188)
T ss_dssp EEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHH
T ss_pred EEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHH
Confidence 9999998654 46888999999999999999976667766554
No 111
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=4.1e-22 Score=175.74 Aligned_cols=139 Identities=21% Similarity=0.302 Sum_probs=109.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhc----c
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQ---DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRG----V 89 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~---~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~----a 89 (329)
..+.++|+++|++|||||||++++.++.+.. .+.||++..+ ....+.+|||||++.++..+..+++. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 4567999999999999999999999988753 4566665544 56678999999999999999888887 8
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECC-CcccHHHHHHHHHHHHhCC---cCCCCc
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA-DTDKLEASRNELHALIEKP---QLIGIP 165 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt-~~~S~~~~~~~l~~i~~~~---~~~~iP 165 (329)
++++ +|+|++ ++++|+....|+.+++... ...++|
T Consensus 84 ~~~i-----------------------------------------~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (218)
T 1nrj_B 84 KGLI-----------------------------------------FMVDSTVDPKKLTTTAEFLVDILSITESSCENGID 122 (218)
T ss_dssp EEEE-----------------------------------------EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred CEEE-----------------------------------------EEEECCCChHHHHHHHHHHHHHHhcccccccCCCC
Confidence 9998 999999 8899999999998887642 236899
Q ss_pred EEEEEEcCCCCCh-----------hhHHHHHHHhCCcEEEEeccchH
Q psy2970 166 ILVLGNKRDLPNA-----------LDEKELIDRIMIDFWITLTLLIR 201 (329)
Q Consensus 166 IiLVgNK~Dl~~~-----------~e~~~l~~~~~~~~~etSAk~~~ 201 (329)
+++|+||+|+.++ .++++++...+.+++++||+++.
T Consensus 123 ~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (218)
T 1nrj_B 123 ILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINE 169 (218)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred EEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999999764 23566777778899999999854
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.85 E-value=2.1e-21 Score=161.48 Aligned_cols=143 Identities=18% Similarity=0.229 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCce--eeeEEEeeCceEEEEEEecCCCcc-------ccchHHHHhhccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTV--GFNMRKITKGNVTIKVWDIGGQPR-------FRSMWERYCRGVN 90 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTi--g~~~~~i~~~~~~l~I~DtpG~e~-------~~~~~~~~~~~ad 90 (329)
.||+++|++|||||||++++.++.+. ....+++ ......+..++..+.+|||||++. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999988753 1222222 233334555667899999999987 3445667888999
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
+++ +|+|++++.+.. ..++.+.+.. .++|+++|+
T Consensus 82 ~~i-----------------------------------------~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~ 115 (161)
T 2dyk_A 82 VVL-----------------------------------------FAVDGRAELTQA--DYEVAEYLRR---KGKPVILVA 115 (161)
T ss_dssp EEE-----------------------------------------EEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEE
T ss_pred EEE-----------------------------------------EEEECCCcccHh--HHHHHHHHHh---cCCCEEEEE
Confidence 999 999999864432 2333333332 468999999
Q ss_pred EcCCCCCh-hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 171 NKRDLPNA-LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 171 NK~Dl~~~-~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
||+|+.+. .+.++++ +++. +++++||+++.+.+++++.+
T Consensus 116 nK~Dl~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l 156 (161)
T 2dyk_A 116 TKVDDPKHELYLGPLY-GLGFGDPIPTSSEHARGLEELLEAI 156 (161)
T ss_dssp ECCCSGGGGGGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred ECcccccchHhHHHHH-hCCCCCeEEEecccCCChHHHHHHH
Confidence 99999765 3455566 6787 89999999987777777654
No 113
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.85 E-value=1.4e-20 Score=168.45 Aligned_cols=151 Identities=17% Similarity=0.138 Sum_probs=108.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCC--CceeeeEEEeeCceEEEEEEecCCCc------cc---cchHHHHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMI--PTVGFNMRKITKGNVTIKVWDIGGQP------RF---RSMWERYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~--pTig~~~~~i~~~~~~l~I~DtpG~e------~~---~~~~~~~~ 86 (329)
.+.+||+++|++|||||||++++.++.+..... .|....+..++.+...+.+|||||+. +. ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 467999999999999999999999988752222 23344444555567899999999983 31 11123456
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHH--HHHHHHHHHHhCCcCCCC
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLE--ASRNELHALIEKPQLIGI 164 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~--~~~~~l~~i~~~~~~~~i 164 (329)
..+|+++ +|||++++.+|+ ....|+..+... ..++
T Consensus 107 ~~~d~~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~ 143 (228)
T 2qu8_A 107 HINGVIL-----------------------------------------FIIDISEQCGLTIKEQINLFYSIKSV--FSNK 143 (228)
T ss_dssp TSSEEEE-----------------------------------------EEEETTCTTSSCHHHHHHHHHHHHTC--C-CC
T ss_pred ccccEEE-----------------------------------------EEEecccccCcchHHHHHHHHHHHHh--hcCC
Confidence 7778888 999999988764 344566666443 3479
Q ss_pred cEEEEEEcCCCCChh--------hHHHHHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLPNAL--------DEKELIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~--------e~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++|+||+|+.+.. ..+++++..+ ++++++||+++.+.+++++.+.
T Consensus 144 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 200 (228)
T 2qu8_A 144 SIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITAC 200 (228)
T ss_dssp CEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred cEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHH
Confidence 999999999997541 3556777777 8999999999777777776553
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.84 E-value=2.9e-21 Score=166.01 Aligned_cols=149 Identities=16% Similarity=0.214 Sum_probs=104.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCce-eeeEEEeeCceEEEEEEecCCCccccchH--------HHHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTV-GFNMRKITKGNVTIKVWDIGGQPRFRSMW--------ERYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTi-g~~~~~i~~~~~~l~I~DtpG~e~~~~~~--------~~~~ 86 (329)
++..||+++|++|||||||++++.+..+. ..+.+|+ +.....+..++..+.+|||||++++.... ..++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 35689999999999999999999987642 2222222 22223344455678999999997643211 2357
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+++|+++ +|+|++++.+++ ...|+..+.+.. ..++|+
T Consensus 82 ~~ad~~i-----------------------------------------~v~D~~~~~s~~-~~~~~~~~~~~~-~~~~p~ 118 (172)
T 2gj8_A 82 EQADRVL-----------------------------------------FMVDGTTTDAVD-PAEIWPEFIARL-PAKLPI 118 (172)
T ss_dssp HTCSEEE-----------------------------------------EEEETTTCCCCS-HHHHCHHHHHHS-CTTCCE
T ss_pred HhCCEEE-----------------------------------------EEEECCCCCCHH-HHHHHHHHHHhc-ccCCCE
Confidence 8899999 999999988876 346666665432 357999
Q ss_pred EEEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+||+|+.++. .++++..+.+++++||+++.+.+++++.+.
T Consensus 119 ilv~NK~Dl~~~~--~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 161 (172)
T 2gj8_A 119 TVVRNKADITGET--LGMSEVNGHALIRLSARTGEGVDVLRNHLK 161 (172)
T ss_dssp EEEEECHHHHCCC--CEEEEETTEEEEECCTTTCTTHHHHHHHHH
T ss_pred EEEEECccCCcch--hhhhhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 9999999985431 112223467899999999877787776654
No 115
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.84 E-value=8.2e-21 Score=192.13 Aligned_cols=147 Identities=18% Similarity=0.215 Sum_probs=105.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe------------eCceEEEEEEecCCCccccchHHHH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI------------TKGNVTIKVWDIGGQPRFRSMWERY 85 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i------------~~~~~~l~I~DtpG~e~~~~~~~~~ 85 (329)
.+++||+++|.+|||||||++++.++.+...+.||+|..+... +++.+.+.+|||||++.++.....+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 3569999999999999999999999999888889999887632 2346899999999999999999999
Q ss_pred hhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc
Q psy2970 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP 165 (329)
Q Consensus 86 ~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP 165 (329)
++++|+++ +|+|+++.+. ...|+.++... ..++|
T Consensus 119 l~~~d~ii-----------------------------------------~V~D~s~~~~---~~~~~~~l~~~--~~~~p 152 (535)
T 3dpu_A 119 MTRSSVYM-----------------------------------------LLLDSRTDSN---KHYWLRHIEKY--GGKSP 152 (535)
T ss_dssp HHSSEEEE-----------------------------------------EEECGGGGGG---HHHHHHHHHHH--SSSCC
T ss_pred ccCCcEEE-----------------------------------------EEEeCCCchh---HHHHHHHHHHh--CCCCC
Confidence 99999999 9999987644 44555555443 24689
Q ss_pred EEEEEEcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 166 ILVLGNKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 166 IiLVgNK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
++||+||+|+.+. .+.++++..++.+++++||+++.+++++++.+
T Consensus 153 vilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l 202 (535)
T 3dpu_A 153 VIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202 (535)
T ss_dssp EEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHH
T ss_pred EEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHH
Confidence 9999999999754 34666777788999999999966666665544
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.83 E-value=1.1e-20 Score=174.94 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=112.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceee--eEEEeeCceEEEEEEecCCCccccch------HHHHh--h
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF--NMRKITKGNVTIKVWDIGGQPRFRSM------WERYC--R 87 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~--~~~~i~~~~~~l~I~DtpG~e~~~~~------~~~~~--~ 87 (329)
.+.++|+++|++|||||||+|+|++..+.....|+++. ....+..++..+.+|||||++.+... ...++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 45789999999999999999999998765444444443 33346666789999999999887652 34555 4
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
.+|+++ +|+|+++.++. ..++.++.+ .++|++
T Consensus 83 ~~d~ii-----------------------------------------~V~D~t~~~~~---~~~~~~l~~----~~~pvi 114 (258)
T 3a1s_A 83 DADLVI-----------------------------------------LVADSVNPEQS---LYLLLEILE----MEKKVI 114 (258)
T ss_dssp CCSEEE-----------------------------------------EEEETTSCHHH---HHHHHHHHT----TTCCEE
T ss_pred CCCEEE-----------------------------------------EEeCCCchhhH---HHHHHHHHh----cCCCEE
Confidence 788888 99999986543 345555544 379999
Q ss_pred EEEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 168 VLGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 168 LVgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+||+|+.+. .+.+++++.++++++++||+++.+.+++++.+
T Consensus 115 lv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i 161 (258)
T 3a1s_A 115 LAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKI 161 (258)
T ss_dssp EEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHH
Confidence 99999998653 45789999999999999999977777777655
No 117
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.83 E-value=1.6e-20 Score=174.95 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=113.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcee--eeEEEeeCceEEEEEEecCCCccccc----------hHHHHh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIKVWDIGGQPRFRS----------MWERYC 86 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig--~~~~~i~~~~~~l~I~DtpG~e~~~~----------~~~~~~ 86 (329)
++++|+++|.+|||||||+|++++..+.....|+++ .....+...+..+.+|||||++.+.. ....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 468999999999999999999999876544444443 33445666677889999999988763 223333
Q ss_pred --hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 87 --RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 87 --~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+.+|+++ +|+|+++.++...+..++.+. ++
T Consensus 82 ~~~~~d~ii-----------------------------------------~VvD~~~~~~~~~~~~~l~~~-------~~ 113 (274)
T 3i8s_A 82 LSGDADLLI-----------------------------------------NVVDASNLERNLYLTLQLLEL-------GI 113 (274)
T ss_dssp HHTCCSEEE-----------------------------------------EEEEGGGHHHHHHHHHHHHHH-------TC
T ss_pred hhcCCCEEE-----------------------------------------EEecCCChHHHHHHHHHHHhc-------CC
Confidence 6788888 999999866555555444433 68
Q ss_pred cEEEEEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhcC
Q psy2970 165 PILVLGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 165 PIiLVgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
|+++|+||+|+.+. .+.+++++.++++++++||+++.+.+++++.+..
T Consensus 114 p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~ 165 (274)
T 3i8s_A 114 PCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDR 165 (274)
T ss_dssp CEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHT
T ss_pred CEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 99999999998654 3578899999999999999999889998877754
No 118
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.83 E-value=2.8e-20 Score=160.28 Aligned_cols=145 Identities=19% Similarity=0.201 Sum_probs=100.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceee----eEEEeeCceEEEEEEecCC----------CccccchH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF----NMRKITKGNVTIKVWDIGG----------QPRFRSMW 82 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~----~~~~i~~~~~~l~I~DtpG----------~e~~~~~~ 82 (329)
..+.++|+++|++|||||||++++.++.+...+.++.+. ....++. .+.+||||| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 346799999999999999999999998765444444442 2222322 589999999 67777778
Q ss_pred HHHhhcc---ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 83 ERYCRGV---NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 83 ~~~~~~a---d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
..+++.+ |+++ +|+|++++.++.... .+..+ ..
T Consensus 97 ~~~~~~~~~~~~~i-----------------------------------------~v~d~~~~~~~~~~~-~~~~~-~~- 132 (195)
T 1svi_A 97 ETYITTREELKAVV-----------------------------------------QIVDLRHAPSNDDVQ-MYEFL-KY- 132 (195)
T ss_dssp HHHHHHCTTEEEEE-----------------------------------------EEEETTSCCCHHHHH-HHHHH-HH-
T ss_pred HHHHhhhhcCCEEE-----------------------------------------EEEECCCCCCHHHHH-HHHHH-HH-
Confidence 8888877 7888 999999987776542 12222 21
Q ss_pred cCCCCcEEEEEEcCCCCChhhH----HHHHHHh----CCcEEEEeccchHHHHHHhhhh
Q psy2970 160 QLIGIPILVLGNKRDLPNALDE----KELIDRI----MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~~e~----~~l~~~~----~~~~~etSAk~~~~~~~~l~~i 210 (329)
.++|+++|+||+|+.+..+. +++.+.+ +.+++++||+++.+.+++++.+
T Consensus 133 --~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 189 (195)
T 1svi_A 133 --YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAI 189 (195)
T ss_dssp --TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHH
T ss_pred --cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHH
Confidence 57899999999999876432 3444434 4689999999977777777654
No 119
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.82 E-value=5.8e-20 Score=178.55 Aligned_cols=121 Identities=21% Similarity=0.305 Sum_probs=102.0
Q ss_pred CCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhh
Q psy2970 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLL 129 (329)
Q Consensus 50 ~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (329)
.||+|.....++.+++.+++|||+||+.++.+|..++++++++|
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iI------------------------------------ 221 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAII------------------------------------ 221 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE------------------------------------
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEE------------------------------------
Confidence 35667776677777899999999999999999999999999999
Q ss_pred cceeEEEEECCC----------cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC--------------------hh
Q psy2970 130 FQLIKYMVDAAD----------TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--------------------AL 179 (329)
Q Consensus 130 ~~~~~lV~Dvt~----------~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~--------------------~~ 179 (329)
+|||+++ .++|+++..|+.++.+.....++|++|||||+|+.. ..
T Consensus 222 -----fV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~ 296 (353)
T 1cip_A 222 -----FCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYE 296 (353)
T ss_dssp -----EEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHH
T ss_pred -----EEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHH
Confidence 9999999 678999999999999877778999999999999842 24
Q ss_pred hHHHHHH-----------HhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 180 DEKELID-----------RIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 180 e~~~l~~-----------~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++.++++ ..++.+++|||+++.+.+..+..+.
T Consensus 297 e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~ 339 (353)
T 1cip_A 297 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVT 339 (353)
T ss_dssp HHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHH
Confidence 5666665 3467899999999877777776553
No 120
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.82 E-value=5.4e-20 Score=177.38 Aligned_cols=122 Identities=20% Similarity=0.321 Sum_probs=101.2
Q ss_pred CCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhh
Q psy2970 49 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSL 128 (329)
Q Consensus 49 ~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (329)
..||+|.....++.+++++++|||+||++++.+|.+|+++++++|
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iI----------------------------------- 195 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIM----------------------------------- 195 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEE-----------------------------------
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEE-----------------------------------
Confidence 356788877778888999999999999999999999999999999
Q ss_pred hcceeEEEEEC----------CCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh--------------------
Q psy2970 129 LFQLIKYMVDA----------ADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-------------------- 178 (329)
Q Consensus 129 ~~~~~~lV~Dv----------t~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-------------------- 178 (329)
+|||+ ++.++|+++..|+.++.+.....++|++|+|||+|+.++
T Consensus 196 ------fV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~ 269 (327)
T 3ohm_A 196 ------FLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRD 269 (327)
T ss_dssp ------EEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSC
T ss_pred ------EEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCC
Confidence 99955 477899999999999998877889999999999998532
Q ss_pred -hhHHHHH----------HHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 179 -LDEKELI----------DRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 179 -~e~~~l~----------~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+++.++. ++.++.+++|||++..+.+..+..+.
T Consensus 270 ~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~ 313 (327)
T 3ohm_A 270 AQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK 313 (327)
T ss_dssp HHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHH
Confidence 3445552 23457789999999777777776553
No 121
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.4e-20 Score=162.20 Aligned_cols=123 Identities=22% Similarity=0.337 Sum_probs=94.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhc----c
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQ---DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRG----V 89 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~---~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~----a 89 (329)
..+.++|+++|++|||||||++++.++.+.. .+.|+++..+ ....+.+|||||++.+...+..+++. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-----CCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-----cCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 4577999999999999999999999987643 3344444333 55678899999999998888888876 8
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECC-CcccHHHHHHHHHHHHhCC---cCCCCc
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA-DTDKLEASRNELHALIEKP---QLIGIP 165 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt-~~~S~~~~~~~l~~i~~~~---~~~~iP 165 (329)
|+++ +|||++ ++++++....|+.+++... ...++|
T Consensus 120 ~~~i-----------------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 158 (193)
T 2ged_A 120 KGLI-----------------------------------------FMVDSTVDPKKLTTTAEFLVDILSITESSCENGID 158 (193)
T ss_dssp EEEE-----------------------------------------EEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred CEEE-----------------------------------------EEEECCCCchhHHHHHHHHHHHHhhhhhccccCCC
Confidence 9999 999999 8999999999988887542 125799
Q ss_pred EEEEEEcCCCCChhhHHHHH
Q psy2970 166 ILVLGNKRDLPNALDEKELI 185 (329)
Q Consensus 166 IiLVgNK~Dl~~~~e~~~l~ 185 (329)
+++|+||+|+.++.+.+++.
T Consensus 159 ~ilv~nK~Dl~~~~~~~~~~ 178 (193)
T 2ged_A 159 ILIACNKSELFTARPPSKIK 178 (193)
T ss_dssp EEEEEECTTSTTCCCHHHHH
T ss_pred EEEEEEchHhcCCCCHHHHH
Confidence 99999999998765444433
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.82 E-value=1.5e-20 Score=174.04 Aligned_cols=144 Identities=17% Similarity=0.196 Sum_probs=111.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceee--eEEEeeCceEEEEEEecCCCccccc----------hHHHHh--
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF--NMRKITKGNVTIKVWDIGGQPRFRS----------MWERYC-- 86 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~--~~~~i~~~~~~l~I~DtpG~e~~~~----------~~~~~~-- 86 (329)
.+|+++|.+|||||||+|++++..+.....|+++. ....+..++..+.+|||||+..+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 38999999999999999999998765444455443 3444665667999999999988764 455666
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+++|+++ +|+|+++.+++..+..+ +.+ .++|+
T Consensus 82 ~~~d~vi-----------------------------------------~VvDas~~~~~~~l~~~---l~~----~~~pv 113 (256)
T 3iby_A 82 LEYDCII-----------------------------------------NVIDACHLERHLYLTSQ---LFE----LGKPV 113 (256)
T ss_dssp SCCSEEE-----------------------------------------EEEEGGGHHHHHHHHHH---HTT----SCSCE
T ss_pred CCCCEEE-----------------------------------------EEeeCCCchhHHHHHHH---HHH----cCCCE
Confidence 7889999 99999986655544443 322 37899
Q ss_pred EEEEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhcC
Q psy2970 167 LVLGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 167 iLVgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
++|+||+|+.+. .+.+.+++.++++++++||+++.+.+++++.+..
T Consensus 114 ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~ 163 (256)
T 3iby_A 114 VVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLH 163 (256)
T ss_dssp EEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHT
T ss_pred EEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 999999998654 4577899999999999999998888888877653
No 123
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.82 E-value=3.1e-20 Score=173.92 Aligned_cols=144 Identities=22% Similarity=0.271 Sum_probs=109.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceee--eEEEeeCceEEEEEEecCCCcccc------chHHHHhh--c
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF--NMRKITKGNVTIKVWDIGGQPRFR------SMWERYCR--G 88 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~--~~~~i~~~~~~l~I~DtpG~e~~~------~~~~~~~~--~ 88 (329)
..++|+++|++|||||||+|++++........|++.. ....++. +..+.+|||||++.+. .+...++. +
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 3589999999999999999999987644333343333 3333455 6789999999999886 35566665 5
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+|+++ +|+|+++.++. ..|..++.+ .++|+++
T Consensus 81 ~d~vi-----------------------------------------~V~D~t~~e~~---~~~~~~l~~----~~~p~il 112 (272)
T 3b1v_A 81 ADSIL-----------------------------------------NVVDATNLERN---LYLTTQLIE----TGIPVTI 112 (272)
T ss_dssp CSEEE-----------------------------------------EEEEGGGHHHH---HHHHHHHHH----TCSCEEE
T ss_pred CCEEE-----------------------------------------EEecCCchHhH---HHHHHHHHh----cCCCEEE
Confidence 88888 99999986544 345555543 4789999
Q ss_pred EEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 169 LGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 169 VgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+||+|+... .+.+++++.++++++++||+++.+.+++++.+.
T Consensus 113 v~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~ 159 (272)
T 3b1v_A 113 ALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAA 159 (272)
T ss_dssp EEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHH
T ss_pred EEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHH
Confidence 9999998643 467889999999999999999888888776653
No 124
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.81 E-value=7.5e-20 Score=156.62 Aligned_cols=146 Identities=14% Similarity=0.143 Sum_probs=100.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE-eeCceEEEEEEecCC----------CccccchHHHH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK-ITKGNVTIKVWDIGG----------QPRFRSMWERY 85 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~-i~~~~~~l~I~DtpG----------~e~~~~~~~~~ 85 (329)
....+||+++|++|||||||++++.++++. .+.++.+..... ....+..+.+||||| ++.+..++..+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 345689999999999999999999998743 233333322211 111123577999999 66677777778
Q ss_pred hhcc---ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH--HHHHHHHHHHHhCCc
Q psy2970 86 CRGV---NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL--EASRNELHALIEKPQ 160 (329)
Q Consensus 86 ~~~a---d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~--~~~~~~l~~i~~~~~ 160 (329)
++.+ ++++ +|+|.++..+. ..+..|+.+
T Consensus 99 ~~~~~~~~~vi-----------------------------------------~v~d~~~~~~~~~~~~~~~~~~------ 131 (195)
T 3pqc_A 99 FKNRWSLQMVF-----------------------------------------LLVDGRIPPQDSDLMMVEWMKS------ 131 (195)
T ss_dssp HHHCTTEEEEE-----------------------------------------EEEETTSCCCHHHHHHHHHHHH------
T ss_pred HhcCcCceEEE-----------------------------------------EEecCCCCCCHHHHHHHHHHHH------
Confidence 8776 6666 99999876443 223333332
Q ss_pred CCCCcEEEEEEcCCCCChh-------hHHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 161 LIGIPILVLGNKRDLPNAL-------DEKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~-------e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++|+++|+||+|+.++. +.+++++.++ ++++++||+++.+.+++++.+.
T Consensus 132 -~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 189 (195)
T 3pqc_A 132 -LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLIS 189 (195)
T ss_dssp -TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHH
T ss_pred -cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHH
Confidence 268999999999997652 2344444434 6899999999877788776553
No 125
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.80 E-value=1.4e-19 Score=175.38 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=101.8
Q ss_pred CCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhh
Q psy2970 49 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSL 128 (329)
Q Consensus 49 ~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (329)
+.||+|.....++.+++++++|||+||++++.+|..|+++++++|
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iI----------------------------------- 189 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAI----------------------------------- 189 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEE-----------------------------------
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEE-----------------------------------
Confidence 346688888888888999999999999999999999999999999
Q ss_pred hcceeEEEEECC----------CcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh--------------------
Q psy2970 129 LFQLIKYMVDAA----------DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-------------------- 178 (329)
Q Consensus 129 ~~~~~~lV~Dvt----------~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-------------------- 178 (329)
+|||++ +.++|+++..|+.++.+.....++|++|+|||+|+.++
T Consensus 190 ------fV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~ 263 (340)
T 4fid_A 190 ------FVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNA 263 (340)
T ss_dssp ------EEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCH
T ss_pred ------EEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCH
Confidence 999998 78899999999999998877889999999999998542
Q ss_pred hhHHH-HHHHh--------------------------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 179 LDEKE-LIDRI--------------------------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 179 ~e~~~-l~~~~--------------------------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++.+ +.+++ .+.+.+|||++..+.+..+..+.
T Consensus 264 e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~ 323 (340)
T 4fid_A 264 VMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAV 323 (340)
T ss_dssp HHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHH
Confidence 12322 33444 36789999999777777776554
No 126
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.80 E-value=1.6e-19 Score=167.08 Aligned_cols=145 Identities=19% Similarity=0.125 Sum_probs=112.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--EeeCceEEEEEEecCCCccccc------hHHHHh--hc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRFRS------MWERYC--RG 88 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~~~~~~l~I~DtpG~e~~~~------~~~~~~--~~ 88 (329)
+.++|+++|++|||||||+|++++..+.....|+++.+.. .+..++..+.+|||||+..+.. ....++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 3589999999999999999999998775555565554443 4566677899999999998766 556666 57
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+|+++ +|+|.++. +....++.++.+. .++|+++
T Consensus 82 ~d~vi-----------------------------------------~v~D~~~~---~~~~~~~~~~~~~---~~~p~il 114 (271)
T 3k53_A 82 ADVIV-----------------------------------------DIVDSTCL---MRNLFLTLELFEM---EVKNIIL 114 (271)
T ss_dssp CSEEE-----------------------------------------EEEEGGGH---HHHHHHHHHHHHT---TCCSEEE
T ss_pred CcEEE-----------------------------------------EEecCCcc---hhhHHHHHHHHhc---CCCCEEE
Confidence 88888 99999875 3444555555543 2389999
Q ss_pred EEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 169 LGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 169 VgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+||+|+.+. .+.+.+++.++++++++||+++.+.+++++.+
T Consensus 115 v~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i 160 (271)
T 3k53_A 115 VLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMI 160 (271)
T ss_dssp EEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHH
T ss_pred EEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHH
Confidence 9999998653 35788999999999999999977777777655
No 127
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.79 E-value=1.1e-18 Score=165.20 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=113.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeee-EEEeeCc-eEEEEEEecCCCcccc----------chHH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFN-MRKITKG-NVTIKVWDIGGQPRFR----------SMWE 83 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~-~~~i~~~-~~~l~I~DtpG~e~~~----------~~~~ 83 (329)
...-.|+++|.+|||||||+|+|++.++. .....|+... ......+ +.++.+|||||+.+.. ....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 34578999999999999999999998874 2222233222 2334555 8899999999996654 4556
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.+++++|+++ +|+|+++..+++....|+..+.. .+
T Consensus 88 ~~l~~aD~il-----------------------------------------~VvD~~~~~~~~~~~~~~~~l~~----~~ 122 (308)
T 3iev_A 88 QSLEEADVIL-----------------------------------------FMIDATEGWRPRDEEIYQNFIKP----LN 122 (308)
T ss_dssp HHHHHCSEEE-----------------------------------------EEEETTTBSCHHHHHHHHHHTGG----GC
T ss_pred HHhhcCCEEE-----------------------------------------EEEeCCCCCCchhHHHHHHHHHh----cC
Confidence 7888999999 99999998888887776666643 47
Q ss_pred CcEEEEEEcCCCC-Ch----hhHHHHHHHhC--CcEEEEeccchHHHHHHhhhh
Q psy2970 164 IPILVLGNKRDLP-NA----LDEKELIDRIM--IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 164 iPIiLVgNK~Dl~-~~----~e~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+++|+||+|+. +. ...+++.+.++ .+++++||+++.+.+++++.+
T Consensus 123 ~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l 176 (308)
T 3iev_A 123 KPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTI 176 (308)
T ss_dssp CCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHH
T ss_pred CCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHH
Confidence 8999999999997 43 33566777776 789999999977777777655
No 128
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.79 E-value=2.7e-18 Score=162.75 Aligned_cols=150 Identities=19% Similarity=0.177 Sum_probs=109.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCceeeeEEE-eeCceEEEEEEecCCCccc--------cchHHHHhh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQ--DMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRF--------RSMWERYCR 87 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~--~~~pTig~~~~~-i~~~~~~l~I~DtpG~e~~--------~~~~~~~~~ 87 (329)
+..+|+++|.+|||||||+|++++.++.. ...+|+...... ++.++.++.+|||||+.+. ......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 45689999999999999999999988742 223344333332 4566789999999998763 345566788
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
++|+++ +|+|++++.+.. ..++.+.+... ..++|++
T Consensus 86 ~ad~il-----------------------------------------~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~i 121 (301)
T 1wf3_A 86 DVNAVV-----------------------------------------WVVDLRHPPTPE--DELVARALKPL-VGKVPIL 121 (301)
T ss_dssp SCSEEE-----------------------------------------EEEETTSCCCHH--HHHHHHHHGGG-TTTSCEE
T ss_pred cCCEEE-----------------------------------------EEEECCCCCChH--HHHHHHHHHhh-cCCCCEE
Confidence 999999 999999865433 34444333321 2479999
Q ss_pred EEEEcCCCCChhh-HHHHHHHh-C-CcEEEEeccchHHHHHHhhhhcC
Q psy2970 168 VLGNKRDLPNALD-EKELIDRI-M-IDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 168 LVgNK~Dl~~~~e-~~~l~~~~-~-~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
+|+||+|+.+..+ ..+..+++ + .+++++||+++.+.+.+++.+..
T Consensus 122 lV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~ 169 (301)
T 1wf3_A 122 LVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLA 169 (301)
T ss_dssp EEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHT
T ss_pred EEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999987655 55555555 2 46899999998888888877643
No 129
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.78 E-value=7.2e-19 Score=155.12 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=102.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCC---CCCC-CCceeeeEEEee-CceEEEEEEecCCC----------ccccch
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQF---SQDM-IPTVGFNMRKIT-KGNVTIKVWDIGGQ----------PRFRSM 81 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~---~~~~-~pTig~~~~~i~-~~~~~l~I~DtpG~----------e~~~~~ 81 (329)
....++|+++|.+|||||||+|++.+++. .... ..|....+..+. .++..+.+|||||. +.+..+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 34578999999999999999999998863 1121 223344444554 56678999999994 444556
Q ss_pred HHHHhhc---cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 82 WERYCRG---VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 82 ~~~~~~~---ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
...+++. +|+++ +|+|.++..+ +....++..+.+
T Consensus 106 ~~~~~~~~~~~d~vi-----------------------------------------~v~d~~~~~~-~~~~~~~~~l~~- 142 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMI-----------------------------------------LMMDARRPLT-ELDRRMIEWFAP- 142 (223)
T ss_dssp HHHHHHHCTTEEEEE-----------------------------------------EEEETTSCCC-HHHHHHHHHHGG-
T ss_pred HHHHHhcCcCcCEEE-----------------------------------------EEEeCCCCCC-HHHHHHHHHHHh-
Confidence 6677776 55577 9999987543 222333333322
Q ss_pred CcCCCCcEEEEEEcCCCCChhh----HH---HHHHH-------hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 159 PQLIGIPILVLGNKRDLPNALD----EK---ELIDR-------IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 159 ~~~~~iPIiLVgNK~Dl~~~~e----~~---~l~~~-------~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++|+++|+||+|+.+..+ .+ +.... .+.+++++||+++.+.+++++.+.
T Consensus 143 ---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 206 (223)
T 4dhe_A 143 ---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIE 206 (223)
T ss_dssp ---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHH
T ss_pred ---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHH
Confidence 5689999999999987633 12 12222 356899999999877777776653
No 130
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.77 E-value=2.2e-18 Score=168.00 Aligned_cols=120 Identities=22% Similarity=0.352 Sum_probs=91.3
Q ss_pred CceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhc
Q psy2970 51 PTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLF 130 (329)
Q Consensus 51 pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (329)
||+|.....++.+++.+++|||+||+.++.+|..++++++++|
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iI------------------------------------- 229 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSIL------------------------------------- 229 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEE-------------------------------------
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEE-------------------------------------
Confidence 4556666666677899999999999999999999999999999
Q ss_pred ceeEEEEECCC----------cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC---------------------hh
Q psy2970 131 QLIKYMVDAAD----------TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN---------------------AL 179 (329)
Q Consensus 131 ~~~~lV~Dvt~----------~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~---------------------~~ 179 (329)
+|||+++ .++|+++..|+..+.+.....++|++||+||+|+.+ ..
T Consensus 230 ----fv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~ 305 (362)
T 1zcb_A 230 ----FLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLR 305 (362)
T ss_dssp ----EEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHH
T ss_pred ----EEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHH
Confidence 9999999 789999999999999877778999999999999852 13
Q ss_pred hHHHHH--------H---HhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 180 DEKELI--------D---RIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 180 e~~~l~--------~---~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++.+++ + ..++.+++|||+++.+.+..+..+.
T Consensus 306 e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~ 348 (362)
T 1zcb_A 306 DVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVK 348 (362)
T ss_dssp HHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHH
Confidence 444444 1 3457899999999877777776553
No 131
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.76 E-value=4.9e-19 Score=172.13 Aligned_cols=108 Identities=15% Similarity=0.339 Sum_probs=86.8
Q ss_pred ceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECC--
Q psy2970 63 GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA-- 140 (329)
Q Consensus 63 ~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt-- 140 (329)
+.+.+++|||+||++++.+|..++++++++| +|||++
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI-----------------------------------------~v~dis~y 219 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVI-----------------------------------------FCAAISEY 219 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEE-----------------------------------------EEEEGGGT
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEE-----------------------------------------EEEECccc
Confidence 5689999999999999999999999999999 999998
Q ss_pred --------CcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh--------------------------hhHHHHHH
Q psy2970 141 --------DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--------------------------LDEKELID 186 (329)
Q Consensus 141 --------~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~--------------------------~e~~~l~~ 186 (329)
+.++|+++..|+.++.+.....++|++|||||+|+.++ .++.+++.
T Consensus 220 dq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~ 299 (354)
T 2xtz_A 220 DQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVK 299 (354)
T ss_dssp TCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHH
Confidence 88999999999999988766688999999999998421 23445533
Q ss_pred H-h---------------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 187 R-I---------------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 187 ~-~---------------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+ + .+.+++|||++..+.+..++.+.
T Consensus 300 ~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 300 KKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 2 1 23468999999777777776553
No 132
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.75 E-value=7.9e-18 Score=166.40 Aligned_cols=119 Identities=22% Similarity=0.302 Sum_probs=95.0
Q ss_pred ceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcc
Q psy2970 52 TVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131 (329)
Q Consensus 52 Tig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (329)
|+|+....+..+++.++||||+||++++.+|..|+++++++|
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iI-------------------------------------- 245 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAII-------------------------------------- 245 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEE--------------------------------------
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEE--------------------------------------
Confidence 444444445556789999999999999999999999999999
Q ss_pred eeEEEEECCC----------cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-----------------------
Q psy2970 132 LIKYMVDAAD----------TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA----------------------- 178 (329)
Q Consensus 132 ~~~lV~Dvt~----------~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~----------------------- 178 (329)
+|||+++ .++|+++..|+.++.+.....++|++|||||+|+.++
T Consensus 246 ---fV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~ 322 (402)
T 1azs_C 246 ---FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPE 322 (402)
T ss_dssp ---EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCS
T ss_pred ---EEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhcccccccccccc
Confidence 9999999 8999999999999988766789999999999998421
Q ss_pred ------------hhHHHHH-----HH--------hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 179 ------------LDEKELI-----DR--------IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 179 ------------~e~~~l~-----~~--------~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++..++ +. .++.+++|||++..+.+..+..+.
T Consensus 323 ~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~ 380 (402)
T 1azs_C 323 DATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCR 380 (402)
T ss_dssp SCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHH
Confidence 1233332 22 245688999999777777776553
No 133
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.74 E-value=4.2e-18 Score=171.41 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=92.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceee--eEEEeeCceEEEEEEecCCCccccchHH--------HHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGF--NMRKITKGNVTIKVWDIGGQPRFRSMWE--------RYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~--~~~~i~~~~~~l~I~DtpG~e~~~~~~~--------~~~ 86 (329)
++.++|+++|.+|||||||+|+|.+.+.. ....|+++. ....+..++.++.+|||||++++...+. .++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 45799999999999999999999987532 222333332 2344666778999999999987665432 356
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHH---HHHHHHHHHhCCcCCC
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEA---SRNELHALIEKPQLIG 163 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~---~~~~l~~i~~~~~~~~ 163 (329)
+.+|+++ +|+|++++.+++. ...++..+ .+
T Consensus 311 ~~aD~vl-----------------------------------------~VvD~s~~~s~~~~~~~~~~l~~l------~~ 343 (476)
T 3gee_A 311 AEADLIL-----------------------------------------YLLDLGTERLDDELTEIRELKAAH------PA 343 (476)
T ss_dssp SSCSEEE-----------------------------------------EEEETTTCSSGGGHHHHHHHHHHC------TT
T ss_pred ccCCEEE-----------------------------------------EEEECCCCcchhhhHHHHHHHHhc------CC
Confidence 7788888 9999999988753 33333333 27
Q ss_pred CcEEEEEEcCCCCChhhH--HHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 164 IPILVLGNKRDLPNALDE--KELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~e~--~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+++|+||+|+.+..+. +++.+....+++++||+++.+.+++++.+.
T Consensus 344 ~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~ 393 (476)
T 3gee_A 344 AKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMG 393 (476)
T ss_dssp SEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHHHHT
T ss_pred CCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHHHHH
Confidence 899999999999876432 345555347899999999777777776654
No 134
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.74 E-value=2.7e-17 Score=158.44 Aligned_cols=151 Identities=16% Similarity=0.140 Sum_probs=112.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCceeeeEEEeeCceEEEEEEecCCCccccc---------hHHHHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQD--MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS---------MWERYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~--~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~---------~~~~~~ 86 (329)
...++|+++|.+|||||||+|++.+..+... ...|.+.....+..+...+.+|||||...... ....+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 4678999999999999999999998875321 23455555555666678899999999865321 111223
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc--cHHHHHHHHHHHHhCCcCCCC
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD--KLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~--S~~~~~~~l~~i~~~~~~~~i 164 (329)
..+|+++ +|+|++++. +++....|+.++.... .+.
T Consensus 245 ~~ad~il-----------------------------------------lV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~ 281 (357)
T 2e87_A 245 YLGNLII-----------------------------------------YIFDPSEHCGFPLEEQIHLFEEVHGEF--KDL 281 (357)
T ss_dssp GTCSEEE-----------------------------------------EEECTTCTTSSCHHHHHHHHHHHHHHT--TTS
T ss_pred hcCCEEE-----------------------------------------EEEeCCccccCCHHHHHHHHHHHHHhc--CCC
Confidence 3456666 999999887 7788888888876642 279
Q ss_pred cEEEEEEcCCCCChhh---HHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLPNALD---EKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~e---~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++|+||+|+.+..+ ..++++..+++++++||+++.+.+++++.+.
T Consensus 282 piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~ 331 (357)
T 2e87_A 282 PFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEII 331 (357)
T ss_dssp CEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHH
T ss_pred CEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHH
Confidence 9999999999987633 4456667789999999999888888776664
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.74 E-value=6.6e-18 Score=167.07 Aligned_cols=142 Identities=15% Similarity=0.132 Sum_probs=96.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcee--eeEEEeeCceEEEEEEecCCCcc---------ccchHHHHhhcc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVG--FNMRKITKGNVTIKVWDIGGQPR---------FRSMWERYCRGV 89 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig--~~~~~i~~~~~~l~I~DtpG~e~---------~~~~~~~~~~~a 89 (329)
+|+++|.||||||||+|+|++++.. ....|+++ ..+..+..++..+.+|||||++. ++.++..+++++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~a 82 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 82 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhC
Confidence 7999999999999999999988743 12223332 33445555667889999999875 244567789999
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|+++ +|+|+++..+... .++.++++. .++|+++|
T Consensus 83 d~il-----------------------------------------~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv 116 (439)
T 1mky_A 83 DLVL-----------------------------------------FVVDGKRGITKED--ESLADFLRK---STVDTILV 116 (439)
T ss_dssp SEEE-----------------------------------------EEEETTTCCCHHH--HHHHHHHHH---HTCCEEEE
T ss_pred CEEE-----------------------------------------EEEECCCCCCHHH--HHHHHHHHH---cCCCEEEE
Confidence 9999 9999987654332 233333332 36899999
Q ss_pred EEcCCCCCh--hhH-HHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 170 GNKRDLPNA--LDE-KELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 170 gNK~Dl~~~--~e~-~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
+||+|+.+. .+. .++. ++++ +++++||+++.+.+++++.+
T Consensus 117 ~NK~D~~~~~~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i 160 (439)
T 1mky_A 117 ANKAENLREFEREVKPELY-SLGFGEPIPVSAEHNINLDTMLETI 160 (439)
T ss_dssp EESCCSHHHHHHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred EeCCCCccccHHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHH
Confidence 999998654 122 3443 4566 79999999977777766554
No 136
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.73 E-value=1.2e-17 Score=168.50 Aligned_cols=145 Identities=17% Similarity=0.178 Sum_probs=105.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCc-eeeeEEEeeCceEEEEEEecCCCc-cccc--------hHHHHh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQF--SQDMIPT-VGFNMRKITKGNVTIKVWDIGGQP-RFRS--------MWERYC 86 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~--~~~~~pT-ig~~~~~i~~~~~~l~I~DtpG~e-~~~~--------~~~~~~ 86 (329)
+.++|+++|.+|||||||+|++.+.+. ...+..| .......++.++.++.+|||||+. .+.. ....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 458999999999999999999998753 2333333 233334456667889999999988 5542 235678
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+.+|+++ +|+|++++.+++... ++..+ .+.|+
T Consensus 322 ~~aD~vl-----------------------------------------~VvD~s~~~s~~~~~-il~~l------~~~pi 353 (482)
T 1xzp_A 322 EKADIVL-----------------------------------------FVLDASSPLDEEDRK-ILERI------KNKRY 353 (482)
T ss_dssp HHCSEEE-----------------------------------------EEEETTSCCCHHHHH-HHHHH------TTSSE
T ss_pred hcccEEE-----------------------------------------EEecCCCCCCHHHHH-HHHHh------cCCCE
Confidence 8999999 999999988876532 23222 36899
Q ss_pred EEEEEcCCCCChhhHHHHHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNALDEKELIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~~e~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+||+|+.+..+.+++.+..+ .+++++||+++.+.+++++.+.
T Consensus 354 ivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~ 400 (482)
T 1xzp_A 354 LVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIY 400 (482)
T ss_dssp EEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHH
T ss_pred EEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 99999999976533344443333 6899999999877777776664
No 137
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.72 E-value=7.4e-18 Score=163.02 Aligned_cols=149 Identities=19% Similarity=0.278 Sum_probs=112.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCC-CCceeeeEEEeeCce-EEEEEEecCCCc----cccchHHHHhhc---cce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS-QDM-IPTVGFNMRKITKGN-VTIKVWDIGGQP----RFRSMWERYCRG---VNA 91 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~-~~~-~pTig~~~~~i~~~~-~~l~I~DtpG~e----~~~~~~~~~~~~---ad~ 91 (329)
+|+|+|.+|||||||++++++.++. ..+ .+|....+..+...+ ..+.+|||||+. .+..+...+++. +++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ 239 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 239 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccE
Confidence 5889999999999999999987643 122 245455554454443 689999999963 344455556554 888
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHHHhCC-cCCCCcEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHALIEKP-QLIGIPIL 167 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i~~~~-~~~~iPIi 167 (329)
++ +|+|+++ +++++.+..|+.++.... ...++|++
T Consensus 240 ll-----------------------------------------~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~i 278 (342)
T 1lnz_A 240 IV-----------------------------------------HVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI 278 (342)
T ss_dssp EE-----------------------------------------EEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBC
T ss_pred EE-----------------------------------------EEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEE
Confidence 88 9999998 788999888888886642 23689999
Q ss_pred EEEEcCCCCCh-hhHHHHHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 168 VLGNKRDLPNA-LDEKELIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 168 LVgNK~Dl~~~-~e~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+||+|+.+. .+.+++++.+. .+++++||++...++++++.+.
T Consensus 279 lV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~ 325 (342)
T 1lnz_A 279 IVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVA 325 (342)
T ss_dssp BEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHH
T ss_pred EEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHH
Confidence 99999999876 34677888887 7899999999777777766553
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.72 E-value=1.2e-17 Score=164.99 Aligned_cols=146 Identities=13% Similarity=0.183 Sum_probs=102.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeee--EEEeeCceEEEEEEecCCC----------ccccchHH-H
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFN--MRKITKGNVTIKVWDIGGQ----------PRFRSMWE-R 84 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~--~~~i~~~~~~l~I~DtpG~----------e~~~~~~~-~ 84 (329)
..+||+++|.+|||||||+|++.++++. ....++++.+ ...+..++..+.+|||||+ |.|..++. .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 4589999999999999999999988763 2222332322 2345555667999999998 44544443 4
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++.+|+++ +|+|+++..+++.. .|+..+.+ .+.
T Consensus 254 ~~~~ad~~l-----------------------------------------lv~D~~~~~s~~~~-~~~~~~~~----~~~ 287 (436)
T 2hjg_A 254 AIDRSEVVA-----------------------------------------VVLDGEEGIIEQDK-RIAGYAHE----AGK 287 (436)
T ss_dssp HHHHCSEEE-----------------------------------------EEEETTTCCCHHHH-HHHHHHHH----TTC
T ss_pred HHHhCCEEE-----------------------------------------EEEcCCcCCcHHHH-HHHHHHHH----cCC
Confidence 788899999 99999998887665 45555543 578
Q ss_pred cEEEEEEcCCCCChhh------HHHHHHHh----CCcEEEEeccchHHHHHHhhhh
Q psy2970 165 PILVLGNKRDLPNALD------EKELIDRI----MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~e------~~~l~~~~----~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+++|+||+|+.+..+ .+++.+.+ +++++++||+++.+.+++++.+
T Consensus 288 ~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i 343 (436)
T 2hjg_A 288 AVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAI 343 (436)
T ss_dssp EEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHH
T ss_pred cEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHH
Confidence 9999999999976421 12333443 5799999999976666666554
No 139
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.71 E-value=7.7e-18 Score=166.47 Aligned_cols=144 Identities=18% Similarity=0.157 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC--CC-CCCceeeeEEEeeCceEEEEEEecCCCc--------cccchHHHHhhcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS--QD-MIPTVGFNMRKITKGNVTIKVWDIGGQP--------RFRSMWERYCRGV 89 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~--~~-~~pTig~~~~~i~~~~~~l~I~DtpG~e--------~~~~~~~~~~~~a 89 (329)
.+|+++|.+|||||||+|+|.+.++. .. ...|....+..+..++..+.+|||||++ .++.++..+++++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999987653 11 1222233344566667789999999986 5667778889999
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|+++ +|+|+++..++.. .++.++++. .++|+++|
T Consensus 84 d~il-----------------------------------------~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv 117 (436)
T 2hjg_A 84 DVII-----------------------------------------FMVNGREGVTAAD--EEVAKILYR---TKKPVVLA 117 (436)
T ss_dssp SEEE-----------------------------------------EEEETTTCSCHHH--HHHHHHHTT---CCSCEEEE
T ss_pred CEEE-----------------------------------------EEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEE
Confidence 9999 9999998766443 445555543 57899999
Q ss_pred EEcCCCCChh-hHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNAL-DEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~-e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.+.. +..++. ++++ +++++||+++.+.+++++.+.
T Consensus 118 ~NK~D~~~~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~ 160 (436)
T 2hjg_A 118 VNKLDNTEMRANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVA 160 (436)
T ss_dssp EECCCC-----CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHH
T ss_pred EECccCccchhhHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHH
Confidence 9999997642 222333 4555 789999999777777776653
No 140
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.71 E-value=1.7e-16 Score=155.34 Aligned_cols=151 Identities=17% Similarity=0.100 Sum_probs=109.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCC---CCceeeeE-------------------EEeeCceEEEEEEecCC
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDM---IPTVGFNM-------------------RKITKGNVTIKVWDIGG 74 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~---~pTig~~~-------------------~~i~~~~~~l~I~DtpG 74 (329)
.++.++|+++|.+|+|||||+++|.+....... ..+++... .........+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 467899999999999999999999985433211 11111100 00012237899999999
Q ss_pred CccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHH
Q psy2970 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHA 154 (329)
Q Consensus 75 ~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~ 154 (329)
+++|.......+..+|+++ +|+|+++..++....+++..
T Consensus 85 h~~~~~~~~~~~~~~D~~i-----------------------------------------lVvda~~~~~~~qt~~~~~~ 123 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAI-----------------------------------------LVVAANEPFPQPQTREHFVA 123 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEE-----------------------------------------EEEETTSCSSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhCCEEE-----------------------------------------EEEECCCCCCcHHHHHHHHH
Confidence 9999988888999999999 99999988767777777665
Q ss_pred HHhCCcCCCCcEEEEEEcCCCCChhhHH----HHHHHh------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLPNALDEK----ELIDRI------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~~~~e~~----~l~~~~------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+... ...|+++|+||+|+.+..+.+ ++.+.+ +++++++||+++.+.+++++.+.
T Consensus 124 ~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~ 187 (403)
T 3sjy_A 124 LGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIE 187 (403)
T ss_dssp HHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHH
Confidence 5332 235899999999998864332 333333 57899999999877888777664
No 141
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.70 E-value=4.7e-17 Score=161.71 Aligned_cols=147 Identities=14% Similarity=0.177 Sum_probs=101.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCceeee--EEEeeCceEEEEEEecCC----------CccccchHH-
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF-SQDMIPTVGFN--MRKITKGNVTIKVWDIGG----------QPRFRSMWE- 83 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~-~~~~~pTig~~--~~~i~~~~~~l~I~DtpG----------~e~~~~~~~- 83 (329)
...+||+++|.+|||||||+|++.+.+. .....++++.+ ...+..++..+.+||||| ++++..++.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 3568999999999999999999997653 22222333322 234555666899999999 677776654
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.+++.+|+++ +|+|+++..+ +....++..+.+ .+
T Consensus 273 ~~~~~ad~~l-----------------------------------------lviD~~~~~~-~~~~~~~~~~~~----~~ 306 (456)
T 4dcu_A 273 KAIDRSEVVA-----------------------------------------VVLDGEEGII-EQDKRIAGYAHE----AG 306 (456)
T ss_dssp HHHHHCSEEE-----------------------------------------EEEETTTCCC-HHHHHHHHHHHH----TT
T ss_pred HHHhhCCEEE-----------------------------------------EEEeCCCCcC-HHHHHHHHHHHH----cC
Confidence 4788999999 9999987543 233334444433 56
Q ss_pred CcEEEEEEcCCCCCh-----hhHHHHHHHh-----CCcEEEEeccchHHHHHHhhhh
Q psy2970 164 IPILVLGNKRDLPNA-----LDEKELIDRI-----MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~-----~e~~~l~~~~-----~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+++|+||+|+.+. .+..+.+++. .++++++||+++.+.+++++.+
T Consensus 307 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i 363 (456)
T 4dcu_A 307 KAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAI 363 (456)
T ss_dssp CEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHH
T ss_pred CCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHH
Confidence 899999999999754 3344444444 4799999999976666666554
No 142
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.70 E-value=3.5e-16 Score=143.43 Aligned_cols=153 Identities=14% Similarity=0.070 Sum_probs=101.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCC----CceeeeEEEeeCceEEEEEEecCCC--------ccccchHHH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMI----PTVGFNMRKITKGNVTIKVWDIGGQ--------PRFRSMWER 84 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~----pTig~~~~~i~~~~~~l~I~DtpG~--------e~~~~~~~~ 84 (329)
..++++|+|+|.+|||||||+|++++.++..... .|.......+..++..+.+|||||. +.+......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 4578999999999999999999999987643222 3333444455667788999999997 333333333
Q ss_pred Hh----hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH-HHHHHHHHHHHhCC
Q psy2970 85 YC----RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL-EASRNELHALIEKP 159 (329)
Q Consensus 85 ~~----~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~-~~~~~~l~~i~~~~ 159 (329)
++ +++|+++ +|+|+++.... ..+..++.++...
T Consensus 98 ~~~~~~~~~d~il-----------------------------------------~V~d~~~~~~~~~~~~~~l~~~~~~- 135 (247)
T 3lxw_A 98 CYLLSAPGPHALL-----------------------------------------LVTQLGRFTAQDQQAVRQVRDMFGE- 135 (247)
T ss_dssp HHHHHTTCCSEEE-----------------------------------------EEEETTBCCHHHHHHHHHHHHHHCG-
T ss_pred HHHhcCCCCCEEE-----------------------------------------EEEeCCCCCHHHHHHHHHHHHHhCh-
Confidence 33 7888888 99999863322 2233444444321
Q ss_pred cCCCCcEEEEEEcCCCCCh-----------hhHHHHHHHhCCcEEEEeccc-----hHHHHHHhhhhc
Q psy2970 160 QLIGIPILVLGNKRDLPNA-----------LDEKELIDRIMIDFWITLTLL-----IRWCESFLHHFG 211 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~-----------~e~~~l~~~~~~~~~etSAk~-----~~~~~~~l~~i~ 211 (329)
...+.|++||+||+|+.+. .+++++.++++..+...+++. ....++++..+.
T Consensus 136 ~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~ 203 (247)
T 3lxw_A 136 DVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVE 203 (247)
T ss_dssp GGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHH
Confidence 2246899999999999763 235778888888777666554 456677776654
No 143
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.69 E-value=2e-16 Score=144.25 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=99.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCc---eeeeEEEeeCceEEEEEEecCCCccccchH-----------
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQ-FSQDMIPT---VGFNMRKITKGNVTIKVWDIGGQPRFRSMW----------- 82 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~-~~~~~~pT---ig~~~~~i~~~~~~l~I~DtpG~e~~~~~~----------- 82 (329)
.+.++|+|+|.+|||||||++++++.. +...+.|+ .......+..++..+.+|||||+.++....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 457999999999999999999999877 44334433 233333455667889999999987653221
Q ss_pred HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH-HHHHHHHHHHHhCCcC
Q psy2970 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL-EASRNELHALIEKPQL 161 (329)
Q Consensus 83 ~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~-~~~~~~l~~i~~~~~~ 161 (329)
..+++.+|+++ +|+|+++.... ..+..++.+.... .
T Consensus 100 ~~~~~~~d~il-----------------------------------------~V~d~~~~~~~~~~~~~~l~~~~~~--~ 136 (260)
T 2xtp_A 100 LLSAPGPHVLL-----------------------------------------LVTQLGRYTSQDQQAAQRVKEIFGE--D 136 (260)
T ss_dssp HHHTTCCSEEE-----------------------------------------EEEETTCCCHHHHHHHHHHHHHHCG--G
T ss_pred HhcCCCCcEEE-----------------------------------------EEEeCCCCCHHHHHHHHHHHHHhCc--h
Confidence 23567788888 99999863322 2233445444321 1
Q ss_pred CCCcEEEEEE-cCCCCCh-----------hhHHHHHHHhCCc---E--EEEeccchHHHHHHhhhhc
Q psy2970 162 IGIPILVLGN-KRDLPNA-----------LDEKELIDRIMID---F--WITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 162 ~~iPIiLVgN-K~Dl~~~-----------~e~~~l~~~~~~~---~--~etSAk~~~~~~~~l~~i~ 211 (329)
.+.|+++|+| |+|+.+. .+++++.+.++.. + +++||++..+.+++++.+.
T Consensus 137 ~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~ 203 (260)
T 2xtp_A 137 AMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIE 203 (260)
T ss_dssp GGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred hhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHH
Confidence 1345555555 9999754 1234467777643 2 7899999877787776653
No 144
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.69 E-value=4.9e-18 Score=168.76 Aligned_cols=146 Identities=15% Similarity=0.117 Sum_probs=101.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEeeCce-EEEEEEecCCCccccch-------HHHH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRKITKGN-VTIKVWDIGGQPRFRSM-------WERY 85 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~i~~~~-~~l~I~DtpG~e~~~~~-------~~~~ 85 (329)
....++|+++|..|+|||||+++++++++. .....|+......+.... .++.+|||||++++..+ ...+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 345789999999999999999999988763 122233344444444333 38999999999887654 3557
Q ss_pred hhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc
Q psy2970 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP 165 (329)
Q Consensus 86 ~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP 165 (329)
++.+|+++ +|+|++..+ ....|+..+.+. ++|
T Consensus 111 l~~aD~vl-----------------------------------------lVvD~~~~~---~~~~~l~~l~~~----~~p 142 (423)
T 3qq5_A 111 FYRADCGI-----------------------------------------LVTDSAPTP---YEDDVVNLFKEM----EIP 142 (423)
T ss_dssp HTSCSEEE-----------------------------------------EECSSSCCH---HHHHHHHHHHHT----TCC
T ss_pred HhcCCEEE-----------------------------------------EEEeCCChH---HHHHHHHHHHhc----CCC
Confidence 88899999 999994333 334455555432 789
Q ss_pred EEEEEEcCCCCChh---hHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 166 ILVLGNKRDLPNAL---DEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 166 IiLVgNK~Dl~~~~---e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+++|+||+|+.++. ..++++++++++++++||+++.+.+++++.+
T Consensus 143 iIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L 190 (423)
T 3qq5_A 143 FVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTI 190 (423)
T ss_dssp EEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHH
T ss_pred EEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999998763 4566777788999999999955555555444
No 145
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.68 E-value=2.4e-16 Score=142.24 Aligned_cols=151 Identities=13% Similarity=0.078 Sum_probs=96.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC----ceeeeEEEeeCceEEEEEEecCCCcc-----------ccch
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIP----TVGFNMRKITKGNVTIKVWDIGGQPR-----------FRSM 81 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~p----Tig~~~~~i~~~~~~l~I~DtpG~e~-----------~~~~ 81 (329)
..+.++|+|+|++|||||||+|++++..+.....+ |.......+..++..+.+|||||... +...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999999887544433 22233334556677899999999543 2333
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC-c
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP-Q 160 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~-~ 160 (329)
...+++++|+++ +|+|+++... ....++..+.+.. .
T Consensus 106 ~~~~~~~~~~~l-----------------------------------------~v~d~~~~~~--~~~~~l~~~~~~~~~ 142 (239)
T 3lxx_A 106 ILLTSPGPHALL-----------------------------------------LVVPLGRYTE--EEHKATEKILKMFGE 142 (239)
T ss_dssp HHHTTTCCSEEE-----------------------------------------EEEETTCCSS--HHHHHHHHHHHHHHH
T ss_pred HHhcCCCCcEEE-----------------------------------------EEeeCCCCCH--HHHHHHHHHHHHhhh
Confidence 344455678888 9999986544 2223333332210 0
Q ss_pred CCCCcEEEEEEcCCCCCh-----------hhHHHHHHHhCCcEEEEeccc-----hHHHHHHhhhh
Q psy2970 161 LIGIPILVLGNKRDLPNA-----------LDEKELIDRIMIDFWITLTLL-----IRWCESFLHHF 210 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~-----------~e~~~l~~~~~~~~~etSAk~-----~~~~~~~l~~i 210 (329)
....|++||+||+|+.+. ..++++.++++..+...+++. .....+++..+
T Consensus 143 ~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i 208 (239)
T 3lxx_A 143 RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLI 208 (239)
T ss_dssp HHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred hccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHH
Confidence 123599999999998653 246778889998888777663 24455555544
No 146
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.67 E-value=2.4e-16 Score=148.91 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=101.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEE-EeeCceEEEEEEecCCCc-cc--------cchHHHHh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMR-KITKGNVTIKVWDIGGQP-RF--------RSMWERYC 86 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~-~i~~~~~~l~I~DtpG~e-~~--------~~~~~~~~ 86 (329)
+..+|+++|++|||||||+|++.+.++. .....|+..... .+..++.++.+|||||.. .. ......++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 4568999999999999999999998763 122223322222 245667889999999987 32 22223445
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+.+|+++ +|+|.++ +.....++.+.+.. .+.|+
T Consensus 87 ~~~D~vl-----------------------------------------~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ 119 (301)
T 1ega_A 87 GDVELVI-----------------------------------------FVVEGTR---WTPDDEMVLNKLRE---GKAPV 119 (301)
T ss_dssp CCEEEEE-----------------------------------------EEEETTC---CCHHHHHHHHHHHS---SSSCE
T ss_pred hcCCEEE-----------------------------------------EEEeCCC---CCHHHHHHHHHHHh---cCCCE
Confidence 6666666 9999977 33333444444432 47899
Q ss_pred EEEEEcCCCCC-hh----hHHHHHHHhCC-cEEEEeccchHHHHHHhhhhcC
Q psy2970 167 LVLGNKRDLPN-AL----DEKELIDRIMI-DFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 167 iLVgNK~Dl~~-~~----e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~~ 212 (329)
++|+||+|+.. .. ..+++.+.++. .++++||+++...+.+++.+..
T Consensus 120 ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~ 171 (301)
T 1ega_A 120 ILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRK 171 (301)
T ss_dssp EEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHT
T ss_pred EEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHH
Confidence 99999999987 32 24455556665 6999999998888887776643
No 147
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.67 E-value=1.9e-16 Score=146.81 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=87.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-------CCceeeeEEEe----eCceEEEEEEecCCCcc-------cc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS-QDM-------IPTVGFNMRKI----TKGNVTIKVWDIGGQPR-------FR 79 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~-------~pTig~~~~~i----~~~~~~l~I~DtpG~e~-------~~ 79 (329)
.+++|+++|.+|+|||||+|++++.+.. ..+ .+|++...... ++..+++.+|||||..+ +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 4699999999999999999998876543 333 67777666542 34447999999999732 33
Q ss_pred chH-------HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHH
Q psy2970 80 SMW-------ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNEL 152 (329)
Q Consensus 80 ~~~-------~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l 152 (329)
.+. ..+++....+- |. ....-..+++++++|.++....+....++
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~-------------r~---------------~~~d~r~~~~l~~i~~~~~~~~~~d~~~l 138 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVN-------------RR---------------QMPDNRVQCCLYFIAPSGHGLKPLDIEFM 138 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSC-------------CC---------------SCCCCCCCEEEEEECSCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccc-------------cc---------------cccCCceeEEEEEecCCCCCCCHHHHHHH
Confidence 333 34444311111 00 00000123444888766533223334444
Q ss_pred HHHHhCCcCCCCcEEEEEEcCCCCChhhH-------HHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 153 HALIEKPQLIGIPILVLGNKRDLPNALDE-------KELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 153 ~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~-------~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+.. ++|+++|+||+|+....+. .+..+..+++++++||++....+++.+.+.
T Consensus 139 ~~l~~-----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~ 199 (274)
T 3t5d_A 139 KRLHE-----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIK 199 (274)
T ss_dssp HHHTT-----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHH
T ss_pred HHHhc-----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHh
Confidence 44422 7899999999999865433 233345578999999999777777766554
No 148
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.66 E-value=1.1e-15 Score=149.54 Aligned_cols=139 Identities=17% Similarity=0.204 Sum_probs=103.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC--------CCCC-----------CCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG--------QFSQ-----------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~--------~~~~-----------~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
++.++|+++|.+|+|||||+++|.+. .+.. ....|+......++.+...+.+|||||+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 56799999999999999999999872 2210 1122444444456667788999999999999
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
......+++.+|+++ +|+|+++... .....++..+..
T Consensus 89 ~~~~~~~~~~aD~~i-----------------------------------------lVvda~~g~~-~qt~~~l~~~~~- 125 (405)
T 2c78_A 89 IKNMITGAAQMDGAI-----------------------------------------LVVSAADGPM-PQTREHILLARQ- 125 (405)
T ss_dssp HHHHHHHHTTCSSEE-----------------------------------------EEEETTTCCC-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCEEE-----------------------------------------EEEECCCCCc-HHHHHHHHHHHH-
Confidence 888888899999999 9999988653 344555544432
Q ss_pred CcCCCCc-EEEEEEcCCCCC-hh-------hHHHHHHHhC-----CcEEEEeccchHH
Q psy2970 159 PQLIGIP-ILVLGNKRDLPN-AL-------DEKELIDRIM-----IDFWITLTLLIRW 202 (329)
Q Consensus 159 ~~~~~iP-IiLVgNK~Dl~~-~~-------e~~~l~~~~~-----~~~~etSAk~~~~ 202 (329)
.++| +++|+||+|+.+ +. +..++.++++ .+++++||+++.+
T Consensus 126 ---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 126 ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp ---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred ---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 4678 899999999984 21 3445666665 6899999999644
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.66 E-value=1.7e-16 Score=159.10 Aligned_cols=144 Identities=13% Similarity=0.049 Sum_probs=98.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC--CC-------------------------------CCCCCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ--FS-------------------------------QDMIPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~--~~-------------------------------~~~~pTig~~~~~i~~~ 63 (329)
.+..+||+++|.+|+|||||+++|+... +. .....|+...+..++.+
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 4678999999999999999999997541 11 01123444555567778
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
+..+.||||||+++|......+++.+|+++ +|+|+++..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~l-----------------------------------------lVvDa~~g~ 148 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAI-----------------------------------------LCVDCSTNA 148 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEE-----------------------------------------EEEECCC--
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEE-----------------------------------------EEEECCCCc
Confidence 889999999999999998899999999999 999999865
Q ss_pred cHHH-----HHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh--h-------hHHHHHHHh-----CCcEEEEeccchHHH
Q psy2970 144 KLEA-----SRNELHALIEKPQLIGIPILVLGNKRDLPNA--L-------DEKELIDRI-----MIDFWITLTLLIRWC 203 (329)
Q Consensus 144 S~~~-----~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~--~-------e~~~l~~~~-----~~~~~etSAk~~~~~ 203 (329)
++.. .......+... ....|++||+||+|+.+. . +..++.+++ +++++++||+++.+.
T Consensus 149 ~~~~~~~~~qt~e~~~~~~~--~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi 225 (483)
T 3p26_A 149 FESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGV 225 (483)
T ss_dssp ----CCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTS
T ss_pred cccccchhhhHHHHHHHHHH--cCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCc
Confidence 4322 12222222221 122469999999999862 1 223333344 357999999995443
No 150
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.66 E-value=1.1e-16 Score=158.54 Aligned_cols=144 Identities=17% Similarity=0.184 Sum_probs=100.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC--CCCC-------------------------------CCCCceeeeEEEeeCce
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG--QFSQ-------------------------------DMIPTVGFNMRKITKGN 64 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~--~~~~-------------------------------~~~pTig~~~~~i~~~~ 64 (329)
++.++|+++|.+|+|||||+++|+.. .+.. ....|+...+..++.+.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46799999999999999999999864 3321 12345555556677788
Q ss_pred EEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCccc
Q psy2970 65 VTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK 144 (329)
Q Consensus 65 ~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S 144 (329)
..+.+|||||+++|......+++.+|+++ +|+|+++ .+
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~i-----------------------------------------lVvDa~~-gs 121 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAI-----------------------------------------LVVSAKK-GE 121 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEE-----------------------------------------EEEECST-TH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEE-----------------------------------------EEEECCC-Cc
Confidence 89999999999999888888999999999 9999998 67
Q ss_pred HHHHHHHH---HHHHhCCcCCCC-cEEEEEEcCCCCCh-----------hhHHHHHHHhC-----CcEEEEeccchHHH
Q psy2970 145 LEASRNEL---HALIEKPQLIGI-PILVLGNKRDLPNA-----------LDEKELIDRIM-----IDFWITLTLLIRWC 203 (329)
Q Consensus 145 ~~~~~~~l---~~i~~~~~~~~i-PIiLVgNK~Dl~~~-----------~e~~~l~~~~~-----~~~~etSAk~~~~~ 203 (329)
|+....|. .+........++ |+++++||+|+.+. .+..++.++++ ++++++||+++.+.
T Consensus 122 fe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v 200 (435)
T 1jny_A 122 YEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNI 200 (435)
T ss_dssp HHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTT
T ss_pred cccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccc
Confidence 77544322 121111112344 68999999999761 23555666666 67999999995544
No 151
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.65 E-value=3.2e-16 Score=144.75 Aligned_cols=166 Identities=16% Similarity=0.196 Sum_probs=106.9
Q ss_pred ChHHHHHHHHHHHhcC---CCCceEEEEEcCCCCCHHHHHHHHHcCCCCC------CCCCcee-----------------
Q psy2970 1 MFVLLNRILDWFKSLF---WKEEMELTLVGLQCSGKTTFVNVIASGQFSQ------DMIPTVG----------------- 54 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~---~~k~lkIlllG~~gvGKSSLin~l~~~~~~~------~~~pTig----------------- 54 (329)
|..+++++.+.++..- .....+|+++|.+|||||||+|+|++.++.+ ...|+..
T Consensus 4 ~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g 83 (299)
T 2aka_B 4 LIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKG 83 (299)
T ss_dssp HHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTT
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCC
Confidence 4567888888887653 2356799999999999999999999988731 1223310
Q ss_pred -----ee--------------------------EEEeeCceEEEEEEecCCCc-------------cccchHHHHhhccc
Q psy2970 55 -----FN--------------------------MRKITKGNVTIKVWDIGGQP-------------RFRSMWERYCRGVN 90 (329)
Q Consensus 55 -----~~--------------------------~~~i~~~~~~l~I~DtpG~e-------------~~~~~~~~~~~~ad 90 (329)
.+ +.-.......+.+|||||.. .+..+...+++.++
T Consensus 84 ~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (299)
T 2aka_B 84 KKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKEN 163 (299)
T ss_dssp CCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTT
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCC
Confidence 00 00000113679999999964 34456677888888
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
++++ +|+|+++..+......++..+ . ..+.|+++|+
T Consensus 164 ~~il----------------------------------------~v~d~~~~~~~~~~~~~~~~~-~---~~~~~~i~V~ 199 (299)
T 2aka_B 164 CLIL----------------------------------------AVSPANSDLANSDALKIAKEV-D---PQGQRTIGVI 199 (299)
T ss_dssp EEEE----------------------------------------EEEESSSCGGGCHHHHHHHHH-C---TTCSSEEEEE
T ss_pred eEEE----------------------------------------EEecCCcchhhhHHHHHHHHh-C---CCCCeEEEEE
Confidence 7661 689998754444433444444 2 2578999999
Q ss_pred EcCCCCChhh-HHHHHHH-h-----C-CcEEEEeccchHHHHHHhhhh
Q psy2970 171 NKRDLPNALD-EKELIDR-I-----M-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 171 NK~Dl~~~~e-~~~l~~~-~-----~-~~~~etSAk~~~~~~~~l~~i 210 (329)
||+|+.+..+ ..+..+. + + .+++++||+++.+.+++++.+
T Consensus 200 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l 247 (299)
T 2aka_B 200 TKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAAL 247 (299)
T ss_dssp ECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHH
T ss_pred EccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHH
Confidence 9999976532 2233322 1 2 357889999966555555443
No 152
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.65 E-value=4.5e-16 Score=154.61 Aligned_cols=144 Identities=19% Similarity=0.169 Sum_probs=102.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC--CC-------------------------------CCCCCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ--FS-------------------------------QDMIPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~--~~-------------------------------~~~~pTig~~~~~i~~~ 63 (329)
.+..++|+++|.+|+|||||+++|+... +. .....|+...+..++.+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 3567999999999999999999995431 10 01234555566667777
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
+..+.||||||+++|.......++.+|+++ +|+|+++..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~i-----------------------------------------lVVDa~~g~ 132 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAV-----------------------------------------LVISARKGE 132 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEE-----------------------------------------EEEECCCCc
Confidence 889999999999999888888899999999 999998753
Q ss_pred c---HH---HHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCCh-----------hhHHHHHHHhC------CcEEEEeccc
Q psy2970 144 K---LE---ASRNELHALIEKPQLIGIP-ILVLGNKRDLPNA-----------LDEKELIDRIM------IDFWITLTLL 199 (329)
Q Consensus 144 S---~~---~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~~-----------~e~~~l~~~~~------~~~~etSAk~ 199 (329)
. |+ ...+.+..+. ..++| +++|+||+|+... .+..++.++++ ++++++||++
T Consensus 133 ~e~~~~~~~qt~e~l~~~~----~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~ 208 (439)
T 3j2k_7 133 FETGFEKGGQTREHAMLAK----TAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLT 208 (439)
T ss_pred cccccCCCchHHHHHHHHH----HcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccC
Confidence 2 11 2222222221 24567 9999999999642 22344555555 4699999999
Q ss_pred hHHHHH
Q psy2970 200 IRWCES 205 (329)
Q Consensus 200 ~~~~~~ 205 (329)
+.+.++
T Consensus 209 G~ni~~ 214 (439)
T 3j2k_7 209 GANLKE 214 (439)
T ss_pred Cccccc
Confidence 666655
No 153
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.65 E-value=7.5e-17 Score=161.76 Aligned_cols=145 Identities=15% Similarity=0.186 Sum_probs=92.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeE--EEeeCceEEEEEEecCCCccccchHHH--------Hh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFRSMWER--------YC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~--~~i~~~~~~l~I~DtpG~e~~~~~~~~--------~~ 86 (329)
++.++|+++|++|||||||+|++.+.++. ....|+++.++ ..+..++.++.+|||||+..+....+. ++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 35689999999999999999999986532 22233333322 235556788999999998765443332 45
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+.+|+++ +|+|.+++.+.+. ..++..+ .+.|+
T Consensus 302 ~~aD~vl-----------------------------------------~VvD~s~~~~~~~-~~i~~~l------~~~pi 333 (462)
T 3geh_A 302 NTADLVL-----------------------------------------LTIDAATGWTTGD-QEIYEQV------KHRPL 333 (462)
T ss_dssp CSCSEEE-----------------------------------------EEEETTTCSCHHH-HHHHHHH------TTSCE
T ss_pred hcCCEEE-----------------------------------------EEeccCCCCCHHH-HHHHHhc------cCCcE
Confidence 6677777 9999998776544 3444444 23699
Q ss_pred EEEEEcCCCCChhhHHHHHHH-hCCcEEEEeccchHHHHHHhhhh
Q psy2970 167 LVLGNKRDLPNALDEKELIDR-IMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 167 iLVgNK~Dl~~~~e~~~l~~~-~~~~~~etSAk~~~~~~~~l~~i 210 (329)
++|+||+|+.+..+...+.+. .+.+++++||+++.+.+++++.+
T Consensus 334 ivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i 378 (462)
T 3geh_A 334 ILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAI 378 (462)
T ss_dssp EEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHH
T ss_pred EEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHH
Confidence 999999999876443211110 34689999999977777776655
No 154
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.65 E-value=1.2e-15 Score=149.43 Aligned_cols=151 Identities=15% Similarity=0.107 Sum_probs=94.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCC--ceeeeEEEee-------------------C----ceEEEE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ---FSQDMIP--TVGFNMRKIT-------------------K----GNVTIK 68 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~---~~~~~~p--Tig~~~~~i~-------------------~----~~~~l~ 68 (329)
.+..++|+++|..++|||||+++|.+.. +.....+ |++..+.... + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998543 3333334 6654443211 1 127899
Q ss_pred EEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH
Q psy2970 69 VWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS 148 (329)
Q Consensus 69 I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~ 148 (329)
+|||||+++|..........+|+++ +|+|+++.......
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~i-----------------------------------------lVvda~~g~~~~qt 123 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAI-----------------------------------------LVIAANEPCPQPQT 123 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEE-----------------------------------------EEEETTSCSSCHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEE-----------------------------------------EEEECCCCCCCchh
Confidence 9999999988766666667779999 99999864322222
Q ss_pred HHHHHHHHhCCcCCCCcEEEEEEcCCCCChh-------hHHHHHHH---hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 149 RNELHALIEKPQLIGIPILVLGNKRDLPNAL-------DEKELIDR---IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 149 ~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~-------e~~~l~~~---~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+.+..+.. ....|+++|+||+|+.+.. +..++.++ .+++++++||+++.+.+++++.+.
T Consensus 124 ~e~l~~~~~---l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 193 (408)
T 1s0u_A 124 KEHLMALEI---LGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQ 193 (408)
T ss_dssp HHHHHHHHH---TTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 222222211 1225899999999997642 23334333 257899999999877788777664
No 155
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.64 E-value=1.1e-15 Score=149.58 Aligned_cols=138 Identities=19% Similarity=0.193 Sum_probs=101.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC-------CCC-----------CCCCCceeeeEEEeeCceEEEEEEecCCCcccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG-------QFS-----------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~-------~~~-----------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~ 79 (329)
++.++|+++|.+++|||||+++|.+. .+. .....|++..+..++.+...+.+|||||+++|.
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH
Confidence 45799999999999999999999863 111 012345555555566677889999999999988
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
.....+++.+|+++ +|+|+++.... ...+.+..+..
T Consensus 81 ~~~~~~~~~aD~~i-----------------------------------------lVvda~~g~~~-qt~e~l~~~~~-- 116 (397)
T 1d2e_A 81 KNMITGTAPLDGCI-----------------------------------------LVVAANDGPMP-QTREHLLLARQ-- 116 (397)
T ss_dssp HHHHHTSSCCSEEE-----------------------------------------EEEETTTCSCH-HHHHHHHHHHH--
T ss_pred HHHHhhHhhCCEEE-----------------------------------------EEEECCCCCCH-HHHHHHHHHHH--
Confidence 77788889999999 99999885432 33333333322
Q ss_pred cCCCCc-EEEEEEcCCCCC-h-------hhHHHHHHHhC-----CcEEEEeccchH
Q psy2970 160 QLIGIP-ILVLGNKRDLPN-A-------LDEKELIDRIM-----IDFWITLTLLIR 201 (329)
Q Consensus 160 ~~~~iP-IiLVgNK~Dl~~-~-------~e~~~l~~~~~-----~~~~etSAk~~~ 201 (329)
.++| +++++||+|+.+ + .+..++.++++ ++++++||+++.
T Consensus 117 --~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~ 170 (397)
T 1d2e_A 117 --IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCAL 170 (397)
T ss_dssp --TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHH
T ss_pred --cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcc
Confidence 4678 789999999984 2 23455666666 589999999944
No 156
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.64 E-value=2.1e-15 Score=149.11 Aligned_cols=146 Identities=16% Similarity=0.136 Sum_probs=94.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcee--eeEEEeeCceEEEEEEecCCCccccchH------------HH
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVG--FNMRKITKGNVTIKVWDIGGQPRFRSMW------------ER 84 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig--~~~~~i~~~~~~l~I~DtpG~e~~~~~~------------~~ 84 (329)
.+||+++|++|||||||+|++.+.... ....|+++ .....+..++..+.+|||||+.+..... ..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~ 259 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVD 259 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHH
Confidence 489999999999999999999987652 11222222 2223344455578999999985432211 23
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++.+|+++ +|+|+++..+.+.. .+.+.+. ..+.
T Consensus 260 ~i~~ad~vl-----------------------------------------lv~d~~~~~~~~~~--~i~~~l~---~~~~ 293 (439)
T 1mky_A 260 SIEKADVVV-----------------------------------------IVLDATQGITRQDQ--RMAGLME---RRGR 293 (439)
T ss_dssp HHHHCSEEE-----------------------------------------EEEETTTCCCHHHH--HHHHHHH---HTTC
T ss_pred HHhhCCEEE-----------------------------------------EEEeCCCCCCHHHH--HHHHHHH---HcCC
Confidence 556677777 99999987665442 2333332 2578
Q ss_pred cEEEEEEcCCCCChhh--HH----HHHHHh----CCcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLPNALD--EK----ELIDRI----MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~e--~~----~l~~~~----~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++|+||+|+.+..+ .+ ++++++ ..+++++||+++.+.+++++.+.
T Consensus 294 ~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~ 350 (439)
T 1mky_A 294 ASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMN 350 (439)
T ss_dssp EEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHH
T ss_pred CEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 9999999999976432 22 333433 47899999999777777776664
No 157
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.63 E-value=1.1e-15 Score=151.07 Aligned_cols=142 Identities=19% Similarity=0.164 Sum_probs=100.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCC--CCC----------CCC-----------------------ceeeeEEEee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQF--SQD----------MIP-----------------------TVGFNMRKIT 61 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~--~~~----------~~p-----------------------Tig~~~~~i~ 61 (329)
.+..++|+++|.+++|||||+++|+.+.. ... ..+ |+...+..+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 44568999999999999999999986431 100 112 2233344456
Q ss_pred CceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC
Q psy2970 62 KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD 141 (329)
Q Consensus 62 ~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~ 141 (329)
.+...+.+|||||+++|......++..+|+++ +|+|+++
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~i-----------------------------------------lVvDa~~ 139 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAI-----------------------------------------ILVDARY 139 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEE-----------------------------------------EEEETTT
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEE-----------------------------------------EEEECCC
Confidence 67788999999999999888888899999999 9999988
Q ss_pred cccHHHHHHHHHHHHhCCcCCCC-cEEEEEEcCCCCCh---------hhHHHHHHHhC-----CcEEEEeccchHHHH
Q psy2970 142 TDKLEASRNELHALIEKPQLIGI-PILVLGNKRDLPNA---------LDEKELIDRIM-----IDFWITLTLLIRWCE 204 (329)
Q Consensus 142 ~~S~~~~~~~l~~i~~~~~~~~i-PIiLVgNK~Dl~~~---------~e~~~l~~~~~-----~~~~etSAk~~~~~~ 204 (329)
... ....+++..+.. .++ |+++|+||+|+.+. .+..++.++++ .+++++||+++.+.+
T Consensus 140 g~~-~qt~~~l~~~~~----~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~ 212 (434)
T 1zun_B 140 GVQ-TQTRRHSYIASL----LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 212 (434)
T ss_dssp CSC-HHHHHHHHHHHH----TTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred CCc-HHHHHHHHHHHH----cCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcc
Confidence 643 333344333322 234 59999999999862 22445666777 679999999965544
No 158
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.63 E-value=1.8e-15 Score=148.18 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=101.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCC--ceeeeEEEee-------------------C----ceEEE
Q psy2970 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQ---FSQDMIP--TVGFNMRKIT-------------------K----GNVTI 67 (329)
Q Consensus 16 ~~~k~lkIlllG~~gvGKSSLin~l~~~~---~~~~~~p--Tig~~~~~i~-------------------~----~~~~l 67 (329)
..+..++|+++|..++|||||+++|.+.. +.....+ |+...+.... + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 34667999999999999999999998543 3333333 6655443211 1 12789
Q ss_pred EEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHH
Q psy2970 68 KVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEA 147 (329)
Q Consensus 68 ~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~ 147 (329)
.+|||||+++|..........+|+++ +|+|+++......
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~i-----------------------------------------lVvda~~g~~~~q 124 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAI-----------------------------------------LVIAANEPCPRPQ 124 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEE-----------------------------------------EEEETTSCSSCHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEE-----------------------------------------EEEECCCCCCChh
Confidence 99999999988766666677789999 9999986421222
Q ss_pred HHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh-------HHHHHHH---hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 148 SRNELHALIEKPQLIGIPILVLGNKRDLPNALD-------EKELIDR---IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 148 ~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e-------~~~l~~~---~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
..+.+..+.. ....|+++|+||+|+.+..+ ..++.+. .+.+++++||+++.+.+.+++.+.
T Consensus 125 t~e~l~~~~~---~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 195 (410)
T 1kk1_A 125 TREHLMALQI---IGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIE 195 (410)
T ss_dssp HHHHHHHHHH---HTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHH---cCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 2222222211 12357999999999987532 2223322 257899999999777777776664
No 159
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.63 E-value=1.5e-15 Score=139.73 Aligned_cols=118 Identities=15% Similarity=0.153 Sum_probs=82.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCC-ceeeeEEEeeCceEEEEEEecCCCccccchHHHHhh-------
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIP-TVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCR------- 87 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~p-Tig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~------- 87 (329)
.++++|+++|.+|||||||+|++.++++. ..+.+ |.......+..++..+.+|||||++++....+.+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 36899999999999999999999998752 23333 333334445667789999999999988665555544
Q ss_pred --ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCC-cCCC
Q psy2970 88 --GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKP-QLIG 163 (329)
Q Consensus 88 --~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~-~~~~ 163 (329)
.+|+++ +|+|++... +... ..++..+.+.. ....
T Consensus 114 ~~~~~~il-----------------------------------------~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~ 151 (262)
T 3def_A 114 NRTIDVLL-----------------------------------------YVDRLDVYA-VDELDKQVVIAITQTFGKEIW 151 (262)
T ss_dssp TCEECEEE-----------------------------------------EEEESSCSC-CCHHHHHHHHHHHHHHCGGGG
T ss_pred cCCCCEEE-----------------------------------------EEEcCCCCC-CCHHHHHHHHHHHHHhchhhh
Confidence 567777 999987654 3333 34554444321 1123
Q ss_pred CcEEEEEEcCCCCC
Q psy2970 164 IPILVLGNKRDLPN 177 (329)
Q Consensus 164 iPIiLVgNK~Dl~~ 177 (329)
.|+++|+||+|+..
T Consensus 152 ~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 152 CKTLLVLTHAQFSP 165 (262)
T ss_dssp GGEEEEEECTTCCC
T ss_pred cCEEEEEeCcccCC
Confidence 48999999999963
No 160
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.63 E-value=7.7e-16 Score=154.79 Aligned_cols=144 Identities=17% Similarity=0.152 Sum_probs=103.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC-------CCCC--CCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhcc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ-------FSQD--MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGV 89 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~-------~~~~--~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~a 89 (329)
+.++|+++|..++|||||+++|.+.+ +... ...|+...+..+..++..+.+|||||+++|.......+..+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhC
Confidence 46899999999999999999999876 2222 22455555555666778999999999999988888889999
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
|+++ +|+|+++ +.+.+.+. .+ + ..++|+
T Consensus 98 D~~i-----------------------------------------lVvda~~g~~~qt~e~l~----~~-~---~~~ip~ 128 (482)
T 1wb1_A 98 DLAL-----------------------------------------IVVDAKEGPKTQTGEHML----IL-D---HFNIPI 128 (482)
T ss_dssp CEEE-----------------------------------------EEEETTTCSCHHHHHHHH----HH-H---HTTCCB
T ss_pred CEEE-----------------------------------------EEEecCCCccHHHHHHHH----HH-H---HcCCCE
Confidence 9999 9999987 33333322 22 2 246889
Q ss_pred EEEEEcCCCCChhh-------HHHHHHHh----CCcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNALD-------EKELIDRI----MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~~e-------~~~l~~~~----~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+||+|+.++.+ ..++.++. +.+++++||+++.+.+++++.+.
T Consensus 129 IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~ 184 (482)
T 1wb1_A 129 IVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLII 184 (482)
T ss_dssp CEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHH
T ss_pred EEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHH
Confidence 99999999987522 33444444 57899999999777777766553
No 161
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.63 E-value=1.7e-16 Score=157.62 Aligned_cols=146 Identities=18% Similarity=0.161 Sum_probs=98.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEeeCceEEEEEEecCC--------CccccchHHHHhh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRKITKGNVTIKVWDIGG--------QPRFRSMWERYCR 87 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~i~~~~~~l~I~DtpG--------~e~~~~~~~~~~~ 87 (329)
+..+|+++|.+|||||||+|+|.++++. .....|....+..++..+..+.+||||| ++.++.+...+++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 3569999999999999999999987653 1112222233445666677899999999 6677778888999
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
++|+++ +|+|..+. +.....++.+++.. .++|++
T Consensus 102 ~ad~il-----------------------------------------~VvD~~~~--~~~~d~~l~~~l~~---~~~pvi 135 (456)
T 4dcu_A 102 EADVII-----------------------------------------FMVNGREG--VTAADEEVAKILYR---TKKPVV 135 (456)
T ss_dssp HCSEEE-----------------------------------------EEEESSSC--SCHHHHHHHHHHTT---CCSCEE
T ss_pred hCCEEE-----------------------------------------EEEeCCCC--CChHHHHHHHHHHH---cCCCEE
Confidence 999999 99998763 33444556666554 578999
Q ss_pred EEEEcCCCCChhh-HHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 168 VLGNKRDLPNALD-EKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 168 LVgNK~Dl~~~~e-~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+||+|+.+..+ ..++. .++. ..+++||+++.+.+++++.+.
T Consensus 136 lV~NK~D~~~~~~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~ 180 (456)
T 4dcu_A 136 LAVNKLDNTEMRANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVA 180 (456)
T ss_dssp EEEECC---------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHH
T ss_pred EEEECccchhhhhhHHHHH-HcCCCceEEeecccccchHHHHHHHH
Confidence 9999999875422 11221 2333 467999999777777776654
No 162
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.63 E-value=1.2e-15 Score=148.46 Aligned_cols=149 Identities=21% Similarity=0.208 Sum_probs=97.2
Q ss_pred ceE-EEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEeeCceEEEEEEecCCCcc---------ccchHHHHhh
Q psy2970 20 EME-LTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKITKGNVTIKVWDIGGQPR---------FRSMWERYCR 87 (329)
Q Consensus 20 ~lk-IlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~---------~~~~~~~~~~ 87 (329)
.++ |+++|++|||||||+|++.+..+. ....+|.+.....+...+..+.+|||+|..+ ++..+. .+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence 466 999999999999999999988763 2234455444455555557889999999732 222222 467
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc--cHHHHHHHHHHHHhCCcCCCCc
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD--KLEASRNELHALIEKPQLIGIP 165 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~--S~~~~~~~l~~i~~~~~~~~iP 165 (329)
.+|.++ +|+|++++. ..+....+ .++++.....+.|
T Consensus 257 ~aD~il-----------------------------------------~VvD~s~~~~~~~~~~~~~-~~~L~~l~~~~~p 294 (364)
T 2qtf_A 257 YSDALI-----------------------------------------LVIDSTFSENLLIETLQSS-FEILREIGVSGKP 294 (364)
T ss_dssp GSSEEE-----------------------------------------EEEETTSCHHHHHHHHHHH-HHHHHHHTCCSCC
T ss_pred hCCEEE-----------------------------------------EEEECCCCcchHHHHHHHH-HHHHHHhCcCCCC
Confidence 788888 999999876 44443333 2333322235789
Q ss_pred EEEEEEcCCCCChh------hHHHHHHHh-C--CcEEEEeccchHHHHHHhhhhc
Q psy2970 166 ILVLGNKRDLPNAL------DEKELIDRI-M--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 166 IiLVgNK~Dl~~~~------e~~~l~~~~-~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+++|+||+|+.+.. .+..+++.+ . .+++++||++..+.+.+++.+.
T Consensus 295 ~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~ 349 (364)
T 2qtf_A 295 ILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIY 349 (364)
T ss_dssp EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHH
T ss_pred EEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHH
Confidence 99999999997642 122344666 2 3689999999888888776654
No 163
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.62 E-value=2.7e-15 Score=152.76 Aligned_cols=126 Identities=17% Similarity=0.112 Sum_probs=93.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC------------------CCCC------CCCCceeeeEEEeeCceEEEEEEecCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG------------------QFSQ------DMIPTVGFNMRKITKGNVTIKVWDIGG 74 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~------------------~~~~------~~~pTig~~~~~i~~~~~~l~I~DtpG 74 (329)
+..+|+++|.+|+|||||+++|+.. .+.. ....|+......+..++..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 4679999999999999999999621 0100 112344444555677789999999999
Q ss_pred CccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHH
Q psy2970 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHA 154 (329)
Q Consensus 75 ~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~ 154 (329)
+++|......+++.+|+++ +|+|+++..+.+....| ..
T Consensus 92 ~~df~~~~~~~l~~aD~al-----------------------------------------lVvDa~~g~~~~t~~~~-~~ 129 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSAL-----------------------------------------MVIDAAKGVEPRTIKLM-EV 129 (528)
T ss_dssp STTCCHHHHHGGGGCSEEE-----------------------------------------EEEETTTCSCHHHHHHH-HH
T ss_pred chhHHHHHHHHHHhCCEEE-----------------------------------------EEEeCCCCCCHHHHHHH-HH
Confidence 9999999999999999999 99999987665554433 33
Q ss_pred HHhCCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCC
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLPNA---LDEKELIDRIMI 190 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~ 190 (329)
+.. .++|+++|+||+|+... ...+++.+.++.
T Consensus 130 ~~~----~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~ 164 (528)
T 3tr5_A 130 CRL----RHTPIMTFINKMDRDTRPSIELLDEIESILRI 164 (528)
T ss_dssp HHT----TTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred HHH----cCCCEEEEEeCCCCccccHHHHHHHHHHhhCC
Confidence 322 47899999999999764 234555555543
No 164
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.62 E-value=4.4e-16 Score=150.97 Aligned_cols=150 Identities=16% Similarity=0.120 Sum_probs=85.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC-CCCC--------CCceeeeEEEe----eCceEEEEEEecCCC-------cc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF-SQDM--------IPTVGFNMRKI----TKGNVTIKVWDIGGQ-------PR 77 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~-~~~~--------~pTig~~~~~i----~~~~~~l~I~DtpG~-------e~ 77 (329)
...++|+++|++|+|||||++++++... ...+ .+|++.....+ ++..+.+.+|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 4568999999999999999999876543 2222 25666655432 233568999999999 77
Q ss_pred ccchHH-------HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC-cccHHHHH
Q psy2970 78 FRSMWE-------RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD-TDKLEASR 149 (329)
Q Consensus 78 ~~~~~~-------~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~-~~S~~~~~ 149 (329)
+..++. .+++++++++ +. .+...+ .++ ++|++++ ..++....
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~-------------r~---~~~d~r------------v~~--~vy~I~~~~~~l~~~d 164 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLN-------------RR---HIIDNR------------VHC--CFYFISPFGHGLKPLD 164 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSC-------------CC----CCCCC------------CCE--EEEEECSSSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc-------------cc---cccCCc------------eEE--EEEEEecCCCCcchhH
Confidence 777776 7888777765 00 001111 122 4555544 44555555
Q ss_pred H-HHHHHHhCCcCCCCcEEEEEEcCCCCChh-------hHHHHHHHhCCcEEEEeccchHH
Q psy2970 150 N-ELHALIEKPQLIGIPILVLGNKRDLPNAL-------DEKELIDRIMIDFWITLTLLIRW 202 (329)
Q Consensus 150 ~-~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~-------e~~~l~~~~~~~~~etSAk~~~~ 202 (329)
. ++..+ ..++|+++|+||+|+.... ++.+++++.+++++++||+++..
T Consensus 165 ~~~~~~l-----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 165 VAFMKAI-----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE 220 (361)
T ss_dssp HHHHHHT-----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC------
T ss_pred HHHHHHh-----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc
Confidence 3 33333 2578999999999998764 33445556688999999998654
No 165
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.61 E-value=3.5e-15 Score=154.10 Aligned_cols=146 Identities=18% Similarity=0.144 Sum_probs=104.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC--CC-----CCC----------CCceeeeEEEe-----eCceEEEEEEecCCCc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ--FS-----QDM----------IPTVGFNMRKI-----TKGNVTIKVWDIGGQP 76 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~--~~-----~~~----------~pTig~~~~~i-----~~~~~~l~I~DtpG~e 76 (329)
+-.+|+++|..++|||||+++|.... +. ..+ ..|+......+ +++.+.+++|||||++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 34689999999999999999997521 11 000 11222111222 3446899999999999
Q ss_pred cccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHH
Q psy2970 77 RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALI 156 (329)
Q Consensus 77 ~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~ 156 (329)
+|......+++.+|+++ +|+|+++..+++....|.....
T Consensus 83 dF~~ev~~~l~~aD~aI-----------------------------------------LVVDa~~gv~~qt~~~~~~~~~ 121 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGAL-----------------------------------------LVVDAGQGVEAQTLANCYTAME 121 (599)
T ss_dssp GGHHHHHHHHHHCSEEE-----------------------------------------EEEETTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEE-----------------------------------------EEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999 9999998877777666655442
Q ss_pred hCCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc---EEEEeccchHHHHHHhhhh
Q psy2970 157 EKPQLIGIPILVLGNKRDLPNA---LDEKELIDRIMID---FWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 157 ~~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~---~~etSAk~~~~~~~~l~~i 210 (329)
.++|+++|+||+|+.++ ...+++.+.++++ ++++||+++.+.+.+++.+
T Consensus 122 -----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I 176 (599)
T 3cb4_D 122 -----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERL 176 (599)
T ss_dssp -----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHH
T ss_pred -----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHH
Confidence 46899999999999874 3356778888874 9999999977777777655
No 166
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.60 E-value=5.5e-15 Score=152.66 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=105.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC--CCC-----CC----------CCCceeeeEEEe-----eCceEEEEEEecCCCc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG--QFS-----QD----------MIPTVGFNMRKI-----TKGNVTIKVWDIGGQP 76 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~--~~~-----~~----------~~pTig~~~~~i-----~~~~~~l~I~DtpG~e 76 (329)
+-.+|+++|..++|||||+++|+.. .+. .. ...|+......+ +++.+.+++|||||++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 4569999999999999999999752 111 00 011221111111 3456899999999999
Q ss_pred cccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHH
Q psy2970 77 RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALI 156 (329)
Q Consensus 77 ~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~ 156 (329)
+|......+++.+|+++ +|+|+++..+.+....|....
T Consensus 85 dF~~ev~r~l~~aD~aI-----------------------------------------LVVDa~~gv~~qt~~~~~~a~- 122 (600)
T 2ywe_A 85 DFSYEVSRALAACEGAL-----------------------------------------LLIDASQGIEAQTVANFWKAV- 122 (600)
T ss_dssp GGHHHHHHHHHTCSEEE-----------------------------------------EEEETTTBCCHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHhCCEEE-----------------------------------------EEEECCCCccHHHHHHHHHHH-
Confidence 99988888999999999 999999987777776665544
Q ss_pred hCCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCC---cEEEEeccchHHHHHHhhhh
Q psy2970 157 EKPQLIGIPILVLGNKRDLPNA---LDEKELIDRIMI---DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 157 ~~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~---~~~etSAk~~~~~~~~l~~i 210 (329)
..++|+++|+||+|+.+. ...+++.+.+++ +++++||+++.+.+.+++.+
T Consensus 123 ----~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I 178 (600)
T 2ywe_A 123 ----EQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAI 178 (600)
T ss_dssp ----HTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHH
T ss_pred ----HCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHH
Confidence 247899999999999865 235667777777 49999999977777777654
No 167
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.59 E-value=6.2e-16 Score=154.69 Aligned_cols=147 Identities=17% Similarity=0.184 Sum_probs=90.3
Q ss_pred HhcCCCCceEEEEEcCCCCCHHHHHHHHHc--CCCC-------------------------------CCCCCceeeeEEE
Q psy2970 13 KSLFWKEEMELTLVGLQCSGKTTFVNVIAS--GQFS-------------------------------QDMIPTVGFNMRK 59 (329)
Q Consensus 13 ~~~~~~k~lkIlllG~~gvGKSSLin~l~~--~~~~-------------------------------~~~~pTig~~~~~ 59 (329)
+..+.+..++|+++|..++|||||+++|+. +.+. .....|++..+..
T Consensus 36 ~~~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~ 115 (467)
T 1r5b_A 36 KDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY 115 (467)
T ss_dssp HHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCE
T ss_pred HhhcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEE
Confidence 344556789999999999999999999964 2211 0124566665556
Q ss_pred eeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEEC
Q psy2970 60 ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139 (329)
Q Consensus 60 i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dv 139 (329)
+..++..+.||||||+++|.......+..+|+++ +|+|+
T Consensus 116 ~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~i-----------------------------------------lVvDa 154 (467)
T 1r5b_A 116 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGV-----------------------------------------LVISA 154 (467)
T ss_dssp EECSSEEEEECCCCC-----------TTSCSEEE-----------------------------------------EEEEC
T ss_pred EecCCeEEEEEECCCcHHHHHHHHhhcccCCEEE-----------------------------------------EEEeC
Confidence 6667789999999999999888888889999999 99999
Q ss_pred CCc---ccHHH---HHHHHHHHHhCCcCCCCc-EEEEEEcCCCCC----h-------hhHHHHHHHh-C------CcEEE
Q psy2970 140 ADT---DKLEA---SRNELHALIEKPQLIGIP-ILVLGNKRDLPN----A-------LDEKELIDRI-M------IDFWI 194 (329)
Q Consensus 140 t~~---~S~~~---~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~----~-------~e~~~l~~~~-~------~~~~e 194 (329)
++. .+|+. ..+.+.... ..++| ++||+||+|+.+ + .+..++.+++ + +++++
T Consensus 155 ~~g~~e~sf~~~~qt~e~l~~~~----~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~ 230 (467)
T 1r5b_A 155 RRGEFEAGFERGGQTREHAVLAR----TQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMP 230 (467)
T ss_dssp STTHHHHTTSTTCCHHHHHHHHH----HTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEE
T ss_pred CcCccccccCCCCcHHHHHHHHH----HcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEe
Confidence 875 23321 222222221 24677 999999999964 1 1355666666 3 56999
Q ss_pred EeccchHHHH
Q psy2970 195 TLTLLIRWCE 204 (329)
Q Consensus 195 tSAk~~~~~~ 204 (329)
+||+++.+.+
T Consensus 231 vSA~~g~~i~ 240 (467)
T 1r5b_A 231 VSAYTGQNVK 240 (467)
T ss_dssp CBTTTTBTTS
T ss_pred cccccccccc
Confidence 9999955544
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.6e-15 Score=156.81 Aligned_cols=142 Identities=13% Similarity=0.098 Sum_probs=100.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--C-------------------------------CCCCceeeeEEEeeCce
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--Q-------------------------------DMIPTVGFNMRKITKGN 64 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~-------------------------------~~~pTig~~~~~i~~~~ 64 (329)
+..++|+++|.+|+|||||+++|+..... . ....|+...+..++...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 56799999999999999999999865321 0 01234445555677778
Q ss_pred EEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc-
Q psy2970 65 VTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD- 143 (329)
Q Consensus 65 ~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~- 143 (329)
..+.||||||+++|......+++.+|+++ +|+|+++..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~l-----------------------------------------lVVDa~~g~~ 283 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAI-----------------------------------------LCVDCSTNAF 283 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEE-----------------------------------------EEEECSHHHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceE-----------------------------------------EEEECCCCcc
Confidence 89999999999999888888899999999 999998631
Q ss_pred --cH---HHHHHHHHHHHhCCcCCC-CcEEEEEEcCCCCCh---------hhHHHHHHHhC-----CcEEEEeccchHHH
Q psy2970 144 --KL---EASRNELHALIEKPQLIG-IPILVLGNKRDLPNA---------LDEKELIDRIM-----IDFWITLTLLIRWC 203 (329)
Q Consensus 144 --S~---~~~~~~l~~i~~~~~~~~-iPIiLVgNK~Dl~~~---------~e~~~l~~~~~-----~~~~etSAk~~~~~ 203 (329)
+| ......+. +... .+ .|++||+||+|+.+. .+..++.++++ ++++++||+++.++
T Consensus 284 e~~~~~~~qt~e~l~-~~~~---lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI 359 (611)
T 3izq_1 284 ESGFDLDGQTKEHML-LASS---LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGV 359 (611)
T ss_dssp HTTCCTTSHHHHHHH-HHHT---TTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTT
T ss_pred cccchhhhHHHHHHH-HHHH---cCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCc
Confidence 11 11222222 2222 33 459999999999872 22334445554 58999999996554
Q ss_pred H
Q psy2970 204 E 204 (329)
Q Consensus 204 ~ 204 (329)
+
T Consensus 360 ~ 360 (611)
T 3izq_1 360 Y 360 (611)
T ss_dssp S
T ss_pred c
Confidence 4
No 169
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.59 E-value=1.3e-14 Score=133.88 Aligned_cols=120 Identities=12% Similarity=0.109 Sum_probs=79.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCce-eeeEEEeeCceEEEEEEecCCCccccchHHH-------H--
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTV-GFNMRKITKGNVTIKVWDIGGQPRFRSMWER-------Y-- 85 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTi-g~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~-------~-- 85 (329)
.+.++|+++|.+|||||||+|++++..+. ..+.+++ ......++.++..+.+|||||++++...... +
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 35799999999999999999999988763 2222222 2223345667789999999999876543221 1
Q ss_pred hhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCc-CCC
Q psy2970 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQ-LIG 163 (329)
Q Consensus 86 ~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~-~~~ 163 (329)
.+.+|+++ +|+|++.. ++... ..++..+.+... ...
T Consensus 117 ~~~~d~il-----------------------------------------~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~ 154 (270)
T 1h65_A 117 DKTIDVLL-----------------------------------------YVDRLDAY-RVDNLDKLVAKAITDSFGKGIW 154 (270)
T ss_dssp TCEECEEE-----------------------------------------EEEESSCC-CCCHHHHHHHHHHHHHHCGGGG
T ss_pred cCCCCEEE-----------------------------------------EEEeCCCC-cCCHHHHHHHHHHHHHhCcccc
Confidence 22567777 99998654 34332 355555543211 122
Q ss_pred CcEEEEEEcCCCCChh
Q psy2970 164 IPILVLGNKRDLPNAL 179 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~ 179 (329)
.|+++|+||+|+...+
T Consensus 155 ~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 155 NKAIVALTHAQFSPPD 170 (270)
T ss_dssp GGEEEEEECCSCCCGG
T ss_pred cCEEEEEECcccCCcC
Confidence 6999999999997653
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.59 E-value=4.1e-15 Score=148.44 Aligned_cols=142 Identities=14% Similarity=0.164 Sum_probs=103.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC--CCCC-------------------------------CCCCceeeeEEEeeCce
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG--QFSQ-------------------------------DMIPTVGFNMRKITKGN 64 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~--~~~~-------------------------------~~~pTig~~~~~i~~~~ 64 (329)
+..++|+++|.+|+|||||+++|+.. .+.. ....|+...+..++.+.
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45799999999999999999999863 2211 12356666666777888
Q ss_pred EEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc-
Q psy2970 65 VTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD- 143 (329)
Q Consensus 65 ~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~- 143 (329)
..+.+|||||+++|......++..+|+++ +|+|+++..
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~i-----------------------------------------lVvda~~g~~ 123 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAI-----------------------------------------LIIAGGVGEF 123 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEE-----------------------------------------EEEECSHHHH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEE-----------------------------------------EEEeCCcCcc
Confidence 89999999999999888888899999999 999998642
Q ss_pred --cHH---HHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCC--h-------hhHHHHHHHhC-----CcEEEEeccchHHH
Q psy2970 144 --KLE---ASRNELHALIEKPQLIGIP-ILVLGNKRDLPN--A-------LDEKELIDRIM-----IDFWITLTLLIRWC 203 (329)
Q Consensus 144 --S~~---~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~--~-------~e~~~l~~~~~-----~~~~etSAk~~~~~ 203 (329)
+|+ ...+.+..+. ..++| +++|+||+|+.+ + .+..++.+.++ ++++++||+++.+.
T Consensus 124 ~~sf~~~~qt~~~~~~~~----~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv 199 (458)
T 1f60_A 124 EAGISKDGQTREHALLAF----TLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM 199 (458)
T ss_dssp HHHTCTTSHHHHHHHHHH----HTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred ccccCcchhHHHHHHHHH----HcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCc
Confidence 221 2223222221 23565 999999999973 2 13445556665 68999999995554
Q ss_pred H
Q psy2970 204 E 204 (329)
Q Consensus 204 ~ 204 (329)
+
T Consensus 200 ~ 200 (458)
T 1f60_A 200 I 200 (458)
T ss_dssp T
T ss_pred c
Confidence 3
No 171
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.58 E-value=5.3e-15 Score=144.13 Aligned_cols=136 Identities=10% Similarity=0.054 Sum_probs=102.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIV 101 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~ 101 (329)
+|+++|.+++|||||+++|. ....|++..+..++.++..+.+|||||+++|.......++.+|+++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ai-------- 88 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAV-------- 88 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEE--------
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEE--------
Confidence 89999999999999999998 3456667777777777788999999999999777777889999999
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE-EEEEE-cCCCCChh
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI-LVLGN-KRDLPNAL 179 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI-iLVgN-K~Dl~~~~ 179 (329)
+|+| + ...+....+++..+.. .++|. ++++| |+|+ ++.
T Consensus 89 ---------------------------------lVvd-~-~g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~ 128 (370)
T 2elf_A 89 ---------------------------------LCIP-P-QGLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMH 128 (370)
T ss_dssp ---------------------------------EEEC-T-TCCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHH
T ss_pred ---------------------------------EEEc-C-CCCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHH
Confidence 9999 4 3445555555554432 45777 88999 9999 643
Q ss_pred h-------HHHHHHHhC---CcEEE--Eeccc---hHHHHHHhhhhc
Q psy2970 180 D-------EKELIDRIM---IDFWI--TLTLL---IRWCESFLHHFG 211 (329)
Q Consensus 180 e-------~~~l~~~~~---~~~~e--tSAk~---~~~~~~~l~~i~ 211 (329)
. .+++.++++ +++++ +||++ ..+.+++++.+.
T Consensus 129 ~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~ 175 (370)
T 2elf_A 129 AIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARIN 175 (370)
T ss_dssp HHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHH
Confidence 2 222222222 68999 99999 877777766553
No 172
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.58 E-value=9.1e-17 Score=164.04 Aligned_cols=147 Identities=18% Similarity=0.156 Sum_probs=105.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--EeeC-ceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KITK-GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~~-~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
++..+|+++|.+|+|||||+++|.+..+.....++++..+. .+.. ++..+.+|||||+++|..++..+++.+|+++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI- 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVI- 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCE-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEE-
Confidence 46789999999999999999999987665444555544332 2322 3457899999999999999888999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|+|+++....+. ...+..+. ..++|+++|+||+|
T Consensus 81 ----------------------------------------LVVDa~dg~~~qt-~e~l~~~~----~~~vPiIVViNKiD 115 (537)
T 3izy_P 81 ----------------------------------------LVVAADDGVMKQT-VESIQHAK----DAHVPIVLAINKCD 115 (537)
T ss_dssp ----------------------------------------EECBSSSCCCHHH-HHHHHHHH----TTTCCEEECCBSGG
T ss_pred ----------------------------------------EEEECCCCccHHH-HHHHHHHH----HcCCcEEEEEeccc
Confidence 9999998654433 33333332 25789999999999
Q ss_pred CCChh--h-HHHHHH------Hh--CCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNAL--D-EKELID------RI--MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~~--e-~~~l~~------~~--~~~~~etSAk~~~~~~~~l~~i 210 (329)
+++.. + .+++.+ .+ .++++++||+++.+.+++++.+
T Consensus 116 l~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I 162 (537)
T 3izy_P 116 KAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEAT 162 (537)
T ss_dssp GTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHH
T ss_pred ccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHH
Confidence 97541 1 111211 12 2479999999977777766554
No 173
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.55 E-value=9.5e-15 Score=150.71 Aligned_cols=144 Identities=17% Similarity=0.184 Sum_probs=101.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCC----CCCCceeeeEEEee----------------CceEEEEEEecCCCccc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQ----DMIPTVGFNMRKIT----------------KGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~----~~~pTig~~~~~i~----------------~~~~~l~I~DtpG~e~~ 78 (329)
+..+|+++|.+|+|||||++++.+..+.. ...++++..+...+ .+...+.+|||||+++|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 56899999999999999999998754432 22345555444311 11235899999999999
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHH
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHAL 155 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i 155 (329)
..++..+++.+|+++ +|+|+++ +.+++.+.. +
T Consensus 84 ~~~~~r~~~~aD~aI-----------------------------------------LVvDa~~Gv~~qT~e~l~~----l 118 (594)
T 1g7s_A 84 TTLRKRGGALADLAI-----------------------------------------LIVDINEGFKPQTQEALNI----L 118 (594)
T ss_dssp TTSBCSSSBSCSEEE-----------------------------------------EEEETTTCCCHHHHHHHHH----H
T ss_pred HHHHHHHHhhCCEEE-----------------------------------------EEEECCCCccHhHHHHHHH----H
Confidence 998888888999999 9999998 555554432 2
Q ss_pred HhCCcCCCCcEEEEEEcCCCCChh-----------------h--------HHHHHHHh---C---------------CcE
Q psy2970 156 IEKPQLIGIPILVLGNKRDLPNAL-----------------D--------EKELIDRI---M---------------IDF 192 (329)
Q Consensus 156 ~~~~~~~~iPIiLVgNK~Dl~~~~-----------------e--------~~~l~~~~---~---------------~~~ 192 (329)
. ..++|+++|+||+|+.... + ..++.+++ + .++
T Consensus 119 ~----~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpv 194 (594)
T 1g7s_A 119 R----MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSI 194 (594)
T ss_dssp H----HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEE
T ss_pred H----HcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceE
Confidence 1 2578999999999996420 0 01111111 2 379
Q ss_pred EEEeccchHHHHHHhhhhc
Q psy2970 193 WITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 193 ~etSAk~~~~~~~~l~~i~ 211 (329)
+++||+++.+.+.+++.+.
T Consensus 195 v~vSA~tG~GI~eLl~~I~ 213 (594)
T 1g7s_A 195 IPISAITGEGIPELLTMLM 213 (594)
T ss_dssp EECCTTTCTTHHHHHHHHH
T ss_pred EEEeccCCCCchhHHHHHH
Confidence 9999999888888776654
No 174
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.54 E-value=1.4e-14 Score=126.33 Aligned_cols=148 Identities=14% Similarity=0.128 Sum_probs=88.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--EeeCceEEEEEEecCCCcc----------ccchHHH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPR----------FRSMWER 84 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~~~~~~l~I~DtpG~e~----------~~~~~~~ 84 (329)
-.+..+|+++|++|||||||+|++.+..+...+.|+.|.... .+..++ .+.+|||||... ++.....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 456789999999999999999999987754334455553321 111111 577999999753 1222223
Q ss_pred Hh---hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 85 YC---RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 85 ~~---~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
++ +.+++++ +++|++++.++... .+.+.+. .
T Consensus 102 ~~~~~~~~~~~~-----------------------------------------~v~d~~~~~~~~~~--~~~~~~~---~ 135 (210)
T 1pui_A 102 YLEKRQSLQGLV-----------------------------------------VLMDIRHPLKDLDQ--QMIEWAV---D 135 (210)
T ss_dssp HHHHCTTEEEEE-----------------------------------------EEEETTSCCCHHHH--HHHHHHH---H
T ss_pred HHHhhhcccEEE-----------------------------------------EEEECCCCCchhHH--HHHHHHH---H
Confidence 33 3456666 99999987654321 1222222 2
Q ss_pred CCCcEEEEEEcCCCCChh-------hHHHHHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 162 IGIPILVLGNKRDLPNAL-------DEKELIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~~-------e~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++|+++|+||+|+.+.. .+.+++.+.+ +.++++||++....+++++.+.
T Consensus 136 ~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~ 194 (210)
T 1pui_A 136 SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 194 (210)
T ss_dssp TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence 468999999999987642 2233334443 5688999999777777776553
No 175
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.54 E-value=2.8e-14 Score=133.13 Aligned_cols=153 Identities=21% Similarity=0.244 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHhcC--CCCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-----CCceeeeEEE--------------
Q psy2970 2 FVLLNRILDWFKSLF--WKEEMELTLVGLQCSGKTTFVNVIASGQFS-QDM-----IPTVGFNMRK-------------- 59 (329)
Q Consensus 2 ~~~~~~~~~~~~~~~--~~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~-----~pTig~~~~~-------------- 59 (329)
..+++++-+.++.+- .....+|+++|.+|||||||+|++++.++. ... .|+.-...+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~ 83 (315)
T 1jwy_B 4 IPVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGE 83 (315)
T ss_dssp HHHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEE
T ss_pred HHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhh
Confidence 356677777665443 234579999999999999999999998762 111 1211000000
Q ss_pred ------------------------------------------eeCceEEEEEEecCCCcc-------------ccchHHH
Q psy2970 60 ------------------------------------------ITKGNVTIKVWDIGGQPR-------------FRSMWER 84 (329)
Q Consensus 60 ------------------------------------------i~~~~~~l~I~DtpG~e~-------------~~~~~~~ 84 (329)
.......+.+|||||..+ +......
T Consensus 84 ~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 163 (315)
T 1jwy_B 84 FLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMA 163 (315)
T ss_dssp ESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHH
T ss_pred hhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHH
Confidence 111335689999999754 3455677
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH-HHHHHHHHHHHhCCcCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL-EASRNELHALIEKPQLIG 163 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~-~~~~~~l~~i~~~~~~~~ 163 (329)
+++++|+++ +|+|.++.... .....+...+ . ..+
T Consensus 164 ~~~~~d~ii-----------------------------------------lvvd~~~~~~~~~~~~~i~~~~-~---~~~ 198 (315)
T 1jwy_B 164 YIKKQNAII-----------------------------------------VAVTPANTDLANSDALQLAKEV-D---PEG 198 (315)
T ss_dssp HHHSTTEEE-----------------------------------------EEEEESSSCSTTCSHHHHHHHH-C---SSC
T ss_pred HHcCCCeEE-----------------------------------------EEEEecCcchhhhHHHHHHHHh-C---CCC
Confidence 888999999 99997543211 1111222222 2 257
Q ss_pred CcEEEEEEcCCCCChhh-HHHHHHH----hCCcEEEEeccc
Q psy2970 164 IPILVLGNKRDLPNALD-EKELIDR----IMIDFWITLTLL 199 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~e-~~~l~~~----~~~~~~etSAk~ 199 (329)
.|+++|+||+|+.+..+ ..+..+. ++.+++++|+.+
T Consensus 199 ~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 239 (315)
T 1jwy_B 199 KRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRS 239 (315)
T ss_dssp SSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCC
T ss_pred CcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCC
Confidence 89999999999976533 2333332 236789998887
No 176
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.53 E-value=6.1e-16 Score=156.76 Aligned_cols=145 Identities=21% Similarity=0.208 Sum_probs=103.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcee--eeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig--~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
++..+|+++|.+++|||||+++|.+..+.....+++. .....+..++..+.+|||||+++|..++...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI-- 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVV-- 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE--
Confidence 4678999999999999999999987655433323222 222334445567899999999999988888888899999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc---ccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT---DKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~---~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+|+|+++. .+.+.+ ..+. ..++|+++++||
T Consensus 80 ---------------------------------------LVVda~~g~~~qT~e~l----~~~~----~~~vPiIVviNK 112 (501)
T 1zo1_I 80 ---------------------------------------LVVAADDGVMPQTIEAI----QHAK----AAQVPVVVAVNK 112 (501)
T ss_dssp ---------------------------------------EEEETTTBSCTTTHHHH----HHHH----HTTCCEEEEEEC
T ss_pred ---------------------------------------EEeecccCccHHHHHHH----HHHH----hcCceEEEEEEe
Confidence 99999873 333332 2221 257899999999
Q ss_pred CCCCChh--hH-------HHHHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNAL--DE-------KELIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~~--e~-------~~l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+++.. +. ..++++++ ++++++||+++.+.+++++.+.
T Consensus 113 iDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~ 162 (501)
T 1zo1_I 113 IDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAIL 162 (501)
T ss_dssp SSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTT
T ss_pred ccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhh
Confidence 9997531 11 11122333 6899999999777777777664
No 177
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.53 E-value=3.9e-15 Score=140.60 Aligned_cols=130 Identities=14% Similarity=0.032 Sum_probs=108.6
Q ss_pred HHHHHHHcCCCC-CCCCCceeeeEEE-eeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccc
Q psy2970 35 TFVNVIASGQFS-QDMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILY 112 (329)
Q Consensus 35 SLin~l~~~~~~-~~~~pTig~~~~~-i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~ 112 (329)
+|+.++..+.|. ..+.||+|..+.. +..+. .+.+||| +++++.+++.+++++|+++
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vi------------------- 89 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVI------------------- 89 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEE-------------------
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC-eEEEEEE--ccccceeeccccccCCEEE-------------------
Confidence 688888889998 8899999976653 22333 7899999 9999999999999999999
Q ss_pred cCCCcCCCCchhhhhhhcceeEEEEECCCcc-cHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh---HHHHHHHh
Q psy2970 113 YEPVDLGVSGPMWLSLLFQLIKYMVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD---EKELIDRI 188 (329)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~-S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e---~~~l~~~~ 188 (329)
+|||+++++ +++.+..|+.++.. .++|++||+||+|+.+..+ .+++++.+
T Consensus 90 ----------------------lV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~ 143 (301)
T 1u0l_A 90 ----------------------LVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY 143 (301)
T ss_dssp ----------------------EEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH
T ss_pred ----------------------EEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHH
Confidence 999999997 78888888887643 4799999999999987643 67788888
Q ss_pred C--CcEEEEeccchHHHHHHhhhhcC
Q psy2970 189 M--IDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 189 ~--~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
+ .++++|||+++.+.++++..+..
T Consensus 144 ~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 144 SGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp TTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred hhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 8 89999999998878887766543
No 178
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.51 E-value=4.7e-14 Score=154.35 Aligned_cols=149 Identities=16% Similarity=0.157 Sum_probs=103.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcC-------CCCC-------CCCC----ceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASG-------QFSQ-------DMIP----TVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~-------~~~~-------~~~p----Tig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.+..++|+++|.+++|||||+++|.+. .+.. ...+ |+......++.+...+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 356799999999999999999999863 1100 0112 222223345667788999999999999
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
.......++.+|++| +|+|+++... ....+++..+..
T Consensus 373 ~~~mi~gas~AD~aI-----------------------------------------LVVDAtdGv~-~QTrEhL~ll~~- 409 (1289)
T 3avx_A 373 VKNMITGAAQMDGAI-----------------------------------------LVVAATDGPM-PQTREHILLGRQ- 409 (1289)
T ss_dssp HHHHHHTSCCCSEEE-----------------------------------------EEEETTTCSC-TTHHHHHHHHHH-
T ss_pred HHHHHHHHhhCCEEE-----------------------------------------EEEcCCccCc-HHHHHHHHHHHH-
Confidence 887788889999999 9999988543 233344433322
Q ss_pred CcCCCCc-EEEEEEcCCCCCh--------hhHHHHHHHhC-----CcEEEEeccch--------HHHHHHhhhhc
Q psy2970 159 PQLIGIP-ILVLGNKRDLPNA--------LDEKELIDRIM-----IDFWITLTLLI--------RWCESFLHHFG 211 (329)
Q Consensus 159 ~~~~~iP-IiLVgNK~Dl~~~--------~e~~~l~~~~~-----~~~~etSAk~~--------~~~~~~l~~i~ 211 (329)
.++| ++||+||+|+.+. .+.+++.++++ ++++++||+++ ...+.+++.+.
T Consensus 410 ---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~ 481 (1289)
T 3avx_A 410 ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLD 481 (1289)
T ss_dssp ---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHH
T ss_pred ---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHh
Confidence 3678 7899999999852 23455666665 58999999997 34566665553
No 179
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.50 E-value=3.3e-14 Score=139.89 Aligned_cols=45 Identities=16% Similarity=0.005 Sum_probs=34.5
Q ss_pred CCcEEEEEEcCCCCChhhHHHHHHHh---CCcEEEEeccchHHHHHHh
Q psy2970 163 GIPILVLGNKRDLPNALDEKELIDRI---MIDFWITLTLLIRWCESFL 207 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~~e~~~l~~~~---~~~~~etSAk~~~~~~~~l 207 (329)
.+|+++|+||+|+......+++.+.+ +.+++.+||+.+.....++
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~ 261 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAA 261 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCS
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHH
Confidence 48999999999998554455555554 6789999999977766543
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.50 E-value=5.1e-14 Score=135.37 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcee-----eeEE----------E--------------------------
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG-----FNMR----------K-------------------------- 59 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig-----~~~~----------~-------------------------- 59 (329)
.+|+|+|++|||||||+|++.+.++.+....++. ..+. .
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 4999999999999999999999877322211111 0000 0
Q ss_pred ----------------eeCceEEEEEEecCCCccc-------------cchHHHHhhccceeEeecceeeehhccccccc
Q psy2970 60 ----------------ITKGNVTIKVWDIGGQPRF-------------RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAI 110 (329)
Q Consensus 60 ----------------i~~~~~~l~I~DtpG~e~~-------------~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~ 110 (329)
.......+.+|||||..++ ..+...+++++|+++
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~ii----------------- 177 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCII----------------- 177 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEE-----------------
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEE-----------------
Confidence 0112345889999998876 556678889999999
Q ss_pred cccCCCcCCCCchhhhhhhcceeEEEEECCCcccH-HHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChh-h----HHHH
Q psy2970 111 LYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL-EASRNELHALIEKPQLIGIPILVLGNKRDLPNAL-D----EKEL 184 (329)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~-~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~-e----~~~l 184 (329)
+|+|.++.+.. .....++..+ ...+.|+++|+||+|+.+.. . .+..
T Consensus 178 ------------------------lvv~~~~~~~~~~~~~~l~~~~----~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~ 229 (360)
T 3t34_A 178 ------------------------LAISPANQDLATSDAIKISREV----DPSGDRTFGVLTKIDLMDKGTDAVEILEGR 229 (360)
T ss_dssp ------------------------EEEEETTSCGGGCHHHHHHHHS----CTTCTTEEEEEECGGGCCTTCCSHHHHTTS
T ss_pred ------------------------EEeecccCCcCCHHHHHHHHHh----cccCCCEEEEEeCCccCCCcccHHHHHcCc
Confidence 88887654432 2223333333 23578999999999987642 2 2223
Q ss_pred HHHhCCcEEEEeccchHHH
Q psy2970 185 IDRIMIDFWITLTLLIRWC 203 (329)
Q Consensus 185 ~~~~~~~~~etSAk~~~~~ 203 (329)
...++.+|+++|+++....
T Consensus 230 ~~~~~~~~~~v~~~s~~~i 248 (360)
T 3t34_A 230 SFKLKYPWVGVVNRSQADI 248 (360)
T ss_dssp SSCCSSCCEEECCCCHHHH
T ss_pred cccccCCeEEEEECChHHh
Confidence 3445688999999985443
No 181
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.49 E-value=1.3e-15 Score=156.78 Aligned_cols=143 Identities=20% Similarity=0.144 Sum_probs=76.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC--C-----------------------------CC--CCCCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ--F-----------------------------SQ--DMIPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~--~-----------------------------~~--~~~pTig~~~~~i~~~ 63 (329)
.+..++|+++|.+|+|||||+++|+... + .. ....|+...+..+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4556899999999999999999996310 0 00 1122333444455666
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
+..+.||||||+++|.......++.+|+++ +|+|+++..
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~al-----------------------------------------LVVDa~~g~ 292 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAV-----------------------------------------LVVDSSQNN 292 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CC-----------------------------------------SEEEEEECC
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEE-----------------------------------------EEEECCCCc
Confidence 788999999999999877777888889888 999998532
Q ss_pred ---cH---HHHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCC--hhh----HHHHHH----HhCC-----cEEEEeccchH
Q psy2970 144 ---KL---EASRNELHALIEKPQLIGIP-ILVLGNKRDLPN--ALD----EKELID----RIMI-----DFWITLTLLIR 201 (329)
Q Consensus 144 ---S~---~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~--~~e----~~~l~~----~~~~-----~~~etSAk~~~ 201 (329)
.+ ......+..+ . ..++| ++||+||+|+.+ ... .+++.+ .+++ +++++||+++.
T Consensus 293 ~e~gi~~~~qt~e~l~~~-~---~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~ 368 (592)
T 3mca_A 293 FERGFLENGQTREHAYLL-R---ALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGT 368 (592)
T ss_dssp SSTTSCSCSSHHHHHHHH-H---HSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCS
T ss_pred cccccccchHHHHHHHHH-H---HcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCc
Confidence 11 1112222222 1 13565 999999999976 211 223333 3354 69999999965
Q ss_pred HHH
Q psy2970 202 WCE 204 (329)
Q Consensus 202 ~~~ 204 (329)
+.+
T Consensus 369 gI~ 371 (592)
T 3mca_A 369 NLI 371 (592)
T ss_dssp SSC
T ss_pred ccc
Confidence 544
No 182
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.49 E-value=4.7e-14 Score=135.56 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=100.2
Q ss_pred ChHHHHHHHHHHHhcC---CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCC------CCCceeeeE--------------
Q psy2970 1 MFVLLNRILDWFKSLF---WKEEMELTLVGLQCSGKTTFVNVIASGQFSQD------MIPTVGFNM-------------- 57 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~---~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~------~~pTig~~~-------------- 57 (329)
|..+++++.|.++..- .-+..+|+++|.+|||||||+|+|++.++.+. ..|++-...
T Consensus 9 l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~ 88 (353)
T 2x2e_A 9 LIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKG 88 (353)
T ss_dssp CHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTT
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCC
Confidence 4568889999887653 22457999999999999999999999887321 123310000
Q ss_pred ---------------------------------EEe-eCceEEEEEEecCCCc-------------cccchHHHHhhccc
Q psy2970 58 ---------------------------------RKI-TKGNVTIKVWDIGGQP-------------RFRSMWERYCRGVN 90 (329)
Q Consensus 58 ---------------------------------~~i-~~~~~~l~I~DtpG~e-------------~~~~~~~~~~~~ad 90 (329)
..+ ......+.+|||||.. .++.+...|++.++
T Consensus 89 ~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (353)
T 2x2e_A 89 KKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKEN 168 (353)
T ss_dssp CCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTT
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCC
Confidence 000 1124579999999963 23446667777777
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
.+++ +|.|.+..-.-.....++..+ ...+.|+++|+
T Consensus 169 ~iiL----------------------------------------~v~~a~~~~~~~~~~~i~~~~----~~~~~~~i~V~ 204 (353)
T 2x2e_A 169 CLIL----------------------------------------AVSPANSDLANSDALKVAKEV----DPQGQRTIGVI 204 (353)
T ss_dssp EEEE----------------------------------------EEEETTSCGGGCHHHHHHHHH----CTTCTTEEEEE
T ss_pred eEEE----------------------------------------EEecCCCccchhHHHHHHHHh----CcCCCceEEEe
Confidence 6661 556665422111222233333 23578999999
Q ss_pred EcCCCCChhh-HHHHHHH------hC-CcEEEEeccchHHHHHHhhh
Q psy2970 171 NKRDLPNALD-EKELIDR------IM-IDFWITLTLLIRWCESFLHH 209 (329)
Q Consensus 171 NK~Dl~~~~e-~~~l~~~------~~-~~~~etSAk~~~~~~~~l~~ 209 (329)
||+|+.+..+ ..++.+. .+ .+++++||+++...+.+++.
T Consensus 205 NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~ 251 (353)
T 2x2e_A 205 TKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAA 251 (353)
T ss_dssp ECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHH
T ss_pred ccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHH
Confidence 9999976532 2233222 12 24677999996654444433
No 183
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.49 E-value=1.4e-13 Score=144.02 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=92.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC--CC------C------------CCCCCceeeeEEEeeCceEEEEEEecCCCcc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG--QF------S------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~--~~------~------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~ 77 (329)
++..+|+++|.+|+|||||+++|... .+ . ....+|++.....+..++..+.+|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 45689999999999999999999831 11 0 0234566666666677789999999999999
Q ss_pred ccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh
Q psy2970 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE 157 (329)
Q Consensus 78 ~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~ 157 (329)
|...+..+++.+|+++ +|+|+++..+++....|. .+..
T Consensus 90 f~~~~~~~l~~aD~~i-----------------------------------------lVvDa~~g~~~~t~~~~~-~~~~ 127 (691)
T 1dar_A 90 FTIEVERSMRVLDGAI-----------------------------------------VVFDSSQGVEPQSETVWR-QAEK 127 (691)
T ss_dssp CHHHHHHHHHHCSEEE-----------------------------------------EEEETTTCSCHHHHHHHH-HHHH
T ss_pred hHHHHHHHHHHCCEEE-----------------------------------------EEEECCCCcchhhHHHHH-HHHH
Confidence 9999999999999999 999999877766655443 3332
Q ss_pred CCcCCCCcEEEEEEcCCCCChh---hHHHHHHHhCC
Q psy2970 158 KPQLIGIPILVLGNKRDLPNAL---DEKELIDRIMI 190 (329)
Q Consensus 158 ~~~~~~iPIiLVgNK~Dl~~~~---e~~~l~~~~~~ 190 (329)
.++|+++|+||+|+...+ ..+++.+.++.
T Consensus 128 ----~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~ 159 (691)
T 1dar_A 128 ----YKVPRIAFANKMDKTGADLWLVIRTMQERLGA 159 (691)
T ss_dssp ----TTCCEEEEEECTTSTTCCHHHHHHHHHHTTCC
T ss_pred ----cCCCEEEEEECCCcccCCHHHHHHHHHHHhCC
Confidence 478999999999998652 34555555553
No 184
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.48 E-value=1.7e-13 Score=139.38 Aligned_cols=128 Identities=17% Similarity=0.177 Sum_probs=91.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCC--CC------C----------------CCCCceeeeEEEeeCceEEEEEEecC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQ--FS------Q----------------DMIPTVGFNMRKITKGNVTIKVWDIG 73 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~--~~------~----------------~~~pTig~~~~~i~~~~~~l~I~Dtp 73 (329)
++..+|+++|.+|+|||||+++|.... +. . ....|+......++.++..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 457899999999999999999998531 10 0 00112222233456778899999999
Q ss_pred CCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHH
Q psy2970 74 GQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELH 153 (329)
Q Consensus 74 G~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~ 153 (329)
|+++|......+++.+|+++ +|+|+++... ......+.
T Consensus 91 G~~df~~~~~~~l~~aD~~I-----------------------------------------lVvDa~~g~~-~~t~~~~~ 128 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCL-----------------------------------------MVIDAAKGVE-DRTRKLME 128 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEE-----------------------------------------EEEETTTCSC-HHHHHHHH
T ss_pred CChhHHHHHHHHHHHCCEEE-----------------------------------------EEEeCCccch-HHHHHHHH
Confidence 99999988888999999999 9999987543 12222232
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCCChh---hHHHHHHHhCCc
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLPNAL---DEKELIDRIMID 191 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~~~~---e~~~l~~~~~~~ 191 (329)
.+ . ..++|+++|+||+|+.... ..+++.+.++.+
T Consensus 129 ~~-~---~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~ 165 (529)
T 2h5e_A 129 VT-R---LRDTPILTFMNKLDRDIRDPMELLDEVENELKIG 165 (529)
T ss_dssp HH-T---TTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred HH-H---HcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCC
Confidence 22 2 3578999999999998753 266777887764
No 185
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.47 E-value=1.1e-13 Score=131.00 Aligned_cols=156 Identities=16% Similarity=0.119 Sum_probs=77.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcC-CCCCCC--------CCceeeeEEE--e--eCceEEEEEEecCCC-------c
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASG-QFSQDM--------IPTVGFNMRK--I--TKGNVTIKVWDIGGQ-------P 76 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~-~~~~~~--------~pTig~~~~~--i--~~~~~~l~I~DtpG~-------e 76 (329)
..-.++|+++|++|||||||++++.+. .++... .+|++..... + +.....+.+|||+|+ +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 345689999999999999999998875 443222 1333322211 1 234578999999998 5
Q ss_pred cccchHH-------HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhc-ceeEEEEECCCcccHHHH
Q psy2970 77 RFRSMWE-------RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLF-QLIKYMVDAADTDKLEAS 148 (329)
Q Consensus 77 ~~~~~~~-------~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lV~Dvt~~~S~~~~ 148 (329)
.++.+.. .++++..+.. ++.+...+ .++++..+.+. .+++..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~-----------------------------rqrv~~ara~~ll~ldePt~-~~Ld~~ 144 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLN-----------------------------RRHIIDNRVHCCFYFISPFG-HGLKPL 144 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSC-----------------------------CTTCCCCCCCEEEEEECSSS-SSCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHh-----------------------------hhhhhhhhhhheeeeecCcc-cCCCHH
Confidence 5555554 4555544433 00000111 11223333222 234333
Q ss_pred H-HHHHHHHhCCcCCCCcEEEEEEcCCCCChh-------hHHHHHHHhCCcEEEEeccchHHHHHHhh
Q psy2970 149 R-NELHALIEKPQLIGIPILVLGNKRDLPNAL-------DEKELIDRIMIDFWITLTLLIRWCESFLH 208 (329)
Q Consensus 149 ~-~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~-------e~~~l~~~~~~~~~etSAk~~~~~~~~l~ 208 (329)
. ..+.++ ..++|+++|+||.|+.... ++.+++++++++++++||++. ..++.+.
T Consensus 145 ~~~~l~~l-----~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~ 206 (301)
T 2qnr_A 145 DVAFMKAI-----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFK 206 (301)
T ss_dssp HHHHHHHH-----TTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CH
T ss_pred HHHHHHHH-----HhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHH
Confidence 3 233333 2467999999999998642 456778888999999999998 5555443
No 186
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.45 E-value=7.1e-13 Score=138.10 Aligned_cols=125 Identities=18% Similarity=0.153 Sum_probs=89.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCC-------------CC-------CCceeeeEEEeeCceEEEEEEecCCCcc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQ-------------DM-------IPTVGFNMRKITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~-------------~~-------~pTig~~~~~i~~~~~~l~I~DtpG~e~ 77 (329)
++..+|+++|.+|+|||||++++.+..... ++ ..|+......+..+.+.+++|||||+++
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 456799999999999999999998432210 00 1122233334566788999999999999
Q ss_pred ccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh
Q psy2970 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE 157 (329)
Q Consensus 78 ~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~ 157 (329)
|......+++.+|+++ +|+|+++.... ....++..+..
T Consensus 87 f~~~~~~~l~~ad~~i-----------------------------------------lVvD~~~g~~~-qt~~~~~~~~~ 124 (665)
T 2dy1_A 87 FVGEIRGALEAADAAL-----------------------------------------VAVSAEAGVQV-GTERAWTVAER 124 (665)
T ss_dssp GHHHHHHHHHHCSEEE-----------------------------------------EEEETTTCSCH-HHHHHHHHHHH
T ss_pred hHHHHHHHHhhcCcEE-----------------------------------------EEEcCCcccch-hHHHHHHHHHH
Confidence 9988899999999999 99998775432 23344444433
Q ss_pred CCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhC
Q psy2970 158 KPQLIGIPILVLGNKRDLPNA---LDEKELIDRIM 189 (329)
Q Consensus 158 ~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~ 189 (329)
.++|+++|+||+|+. . ...+++++.++
T Consensus 125 ----~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 125 ----LGLPRMVVVTKLDKG-GDYYALLEDLRSTLG 154 (665)
T ss_dssp ----TTCCEEEEEECGGGC-CCHHHHHHHHHHHHC
T ss_pred ----ccCCEEEEecCCchh-hhHHHHHHHHHHHhC
Confidence 478999999999987 4 23455555554
No 187
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.45 E-value=2.4e-13 Score=138.94 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=87.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEeeCc------------------------------e-
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRKITKG------------------------------N- 64 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~i~~~------------------------------~- 64 (329)
...+|+|+|.+|||||||+|++++.++. ....|++.....-..+. .
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4579999999999999999999998863 23333332110000000 0
Q ss_pred ----------EEEEEEecCCCcc-----------ccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCch
Q psy2970 65 ----------VTIKVWDIGGQPR-----------FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGP 123 (329)
Q Consensus 65 ----------~~l~I~DtpG~e~-----------~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (329)
..+.+|||||... +......++..+|+++
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il------------------------------ 193 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLII------------------------------ 193 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEE------------------------------
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEE------------------------------
Confidence 2588999999875 4455667788899999
Q ss_pred hhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHHHh
Q psy2970 124 MWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188 (329)
Q Consensus 124 ~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~ 188 (329)
+|+|+++....+....++..+.+ .+.|+++|+||+|+.+..+..++...+
T Consensus 194 -----------~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 194 -----------LLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp -----------EEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred -----------EEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCccCHHHHHHHHHHh
Confidence 99999886666666666665532 457999999999998876655544443
No 188
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.42 E-value=4.2e-13 Score=140.52 Aligned_cols=117 Identities=19% Similarity=0.265 Sum_probs=81.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcee--------------eeEE------Eee---------Cce--
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVG--------------FNMR------KIT---------KGN-- 64 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig--------------~~~~------~i~---------~~~-- 64 (329)
.+..++|+|+|.+|+|||||+|+|.+.++. ....|++. ..+. .++ ...
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 346799999999999999999999988753 23334431 1110 000 000
Q ss_pred ----------------------------EEEEEEecCCCcc---ccchHHHHhhccceeEeecceeeehhcccccccccc
Q psy2970 65 ----------------------------VTIKVWDIGGQPR---FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYY 113 (329)
Q Consensus 65 ----------------------------~~l~I~DtpG~e~---~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~ 113 (329)
..+.+|||||... .......+++.+|+++
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL-------------------- 205 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAIL-------------------- 205 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEE--------------------
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEE--------------------
Confidence 3588999999654 3445667889999999
Q ss_pred CCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh
Q psy2970 114 EPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~ 178 (329)
+|+|.+++.+......|...+ . ..+.|+++|+||+|+...
T Consensus 206 ---------------------~Vvda~~~~s~~e~~~l~~~l-~---~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 206 ---------------------FVMRASQPCTLGERRYLENYI-K---GRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp ---------------------EEEETTSTTCHHHHHHHHHHT-T---TSCCCEEEEEECGGGGGG
T ss_pred ---------------------EEEeCCCccchhHHHHHHHHH-H---hhCCCEEEEEECcccccc
Confidence 999999887776655443333 2 236789999999998643
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.41 E-value=2e-12 Score=135.31 Aligned_cols=134 Identities=20% Similarity=0.166 Sum_probs=96.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc--CCCC-----------C-------CCCCceeeeEEEeeCceEEEEEEecCCCcc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS--GQFS-----------Q-------DMIPTVGFNMRKITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~--~~~~-----------~-------~~~pTig~~~~~i~~~~~~l~I~DtpG~e~ 77 (329)
++..+|+++|.+|+|||||+++|+. +.+. . ....|+......+..++..+.+|||||+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 4568999999999999999999984 2221 0 122344444445666788999999999999
Q ss_pred ccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh
Q psy2970 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE 157 (329)
Q Consensus 78 ~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~ 157 (329)
+......+++.+|+++ +|+|+++..+......| ..+..
T Consensus 88 f~~~~~~~l~~aD~~l-----------------------------------------lVvDa~~g~~~~~~~~~-~~~~~ 125 (693)
T 2xex_A 88 FTVEVERSLRVLDGAV-----------------------------------------TVLDAQSGVEPQTETVW-RQATT 125 (693)
T ss_dssp CCHHHHHHHHHCSEEE-----------------------------------------EEEETTTBSCHHHHHHH-HHHHH
T ss_pred hHHHHHHHHHHCCEEE-----------------------------------------EEECCCCCCcHHHHHHH-HHHHH
Confidence 9999999999999999 99999987766555443 33432
Q ss_pred CCcCCCCcEEEEEEcCCCCChh---hHHHHHHHhCCc----EEEEec
Q psy2970 158 KPQLIGIPILVLGNKRDLPNAL---DEKELIDRIMID----FWITLT 197 (329)
Q Consensus 158 ~~~~~~iPIiLVgNK~Dl~~~~---e~~~l~~~~~~~----~~etSA 197 (329)
.++|+++|+||+|+...+ ..+++.+.++.. .+.+|+
T Consensus 126 ----~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~ipisa 168 (693)
T 2xex_A 126 ----YGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGA 168 (693)
T ss_dssp ----TTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEEEECC
T ss_pred ----cCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEEeeccc
Confidence 478999999999998652 345566666642 455554
No 190
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=3.4e-12 Score=124.61 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCC-CC-CCceeeeEEEeeCc-----------------eEEEEEEecCCCcccc-
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQ-DM-IPTVGFNMRKITKG-----------------NVTIKVWDIGGQPRFR- 79 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~-~~-~pTig~~~~~i~~~-----------------~~~l~I~DtpG~e~~~- 79 (329)
.++|+++|.||||||||+|++++..+.. .+ .+|++.+...+... ...+++|||||+.++.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 3789999999999999999999877432 11 22444333222221 2579999999998753
Q ss_pred ------chHHHHhhccceeE
Q psy2970 80 ------SMWERYCRGVNAIV 93 (329)
Q Consensus 80 ------~~~~~~~~~ad~iI 93 (329)
.....+++++|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il 101 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIG 101 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEE
T ss_pred ccchHHHHHHHHHHhcCeEE
Confidence 22234678999999
No 191
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.39 E-value=1.6e-12 Score=128.92 Aligned_cols=149 Identities=18% Similarity=0.188 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-CCceeeeEEEeeCc-eEEEEEEecCCCccc----cchHHHH---hhccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDM-IPTVGFNMRKITKG-NVTIKVWDIGGQPRF----RSMWERY---CRGVN 90 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~-~pTig~~~~~i~~~-~~~l~I~DtpG~e~~----~~~~~~~---~~~ad 90 (329)
-.|.|+|++|||||||++++.+.... ..+ ..|.......+... ...+.+||+||.... ..+...+ .+.++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 35889999999999999999887532 111 12223333333333 367899999997432 2222222 34567
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC-cCCCCcEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP-QLIGIPILVL 169 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~-~~~~iPIiLV 169 (329)
.++ .++|++ .+.+..+..+..++.... ...+.|.++|
T Consensus 238 ~lL-----------------------------------------~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILV 275 (416)
T 1udx_A 238 VLL-----------------------------------------YVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVA 275 (416)
T ss_dssp EEE-----------------------------------------EEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred hhh-----------------------------------------EEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEE
Confidence 777 999998 666777777666665431 1245789999
Q ss_pred EEcCCCCChhhHHHH---HHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALDEKEL---IDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e~~~l---~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+......+++ .++.+.+++++||++...++++++.+.
T Consensus 276 lNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 276 LNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp EECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred EECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 999999876333333 344567899999999777777776553
No 192
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=1.2e-12 Score=129.76 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=79.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-------CCceeeeEEEe----eCceEEEEEEecCCCccccch---H
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDM-------IPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRSM---W 82 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~-------~pTig~~~~~i----~~~~~~l~I~DtpG~e~~~~~---~ 82 (329)
.-.++|+|+|++|||||||++.|++..+. ..+ .+|++.....+ ......+.+|||+|....... +
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34579999999999999999999987663 211 23444333221 223357899999998654210 0
Q ss_pred H-----------HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc-ccHHHHH-
Q psy2970 83 E-----------RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKLEASR- 149 (329)
Q Consensus 83 ~-----------~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~-~S~~~~~- 149 (329)
. .++..--+ +.+ .++..++ +.+++|+++.. .++....
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~-------------IaR---al~~d~~--------------~~vlL~ldePt~~~L~~~d~ 158 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESR-------------VNR---RQMPDNR--------------VQCCLYFIAPSGHGLKPLDI 158 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC--------------CC---CCCCCC---------------CCEEEEECCC-CCSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHH---HhccCCC--------------eeEEEEEecCcccCCCHHHH
Confidence 1 11110000 001 1122222 11255555443 3454444
Q ss_pred HHHHHHHhCCcCCCCcEEEEEEcCCCCChh-------hHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 150 NELHALIEKPQLIGIPILVLGNKRDLPNAL-------DEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 150 ~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~-------e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.++..+. .++|+++|+||+|+.... ++.+.++..+++++++||++....+..+..+
T Consensus 159 ~~lk~L~-----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l 221 (418)
T 2qag_C 159 EFMKRLH-----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKI 221 (418)
T ss_dssp HHHHHHT-----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC--------------
T ss_pred HHHHHHh-----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHH
Confidence 4555552 368999999999998753 3455667789999999999865555444333
No 193
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.36 E-value=7.6e-12 Score=131.26 Aligned_cols=127 Identities=17% Similarity=0.052 Sum_probs=90.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC--CCCC------------------CCCCceeeeEEEeeCce-------EEEEEE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG--QFSQ------------------DMIPTVGFNMRKITKGN-------VTIKVW 70 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~--~~~~------------------~~~pTig~~~~~i~~~~-------~~l~I~ 70 (329)
++..+|+++|..|+|||||+++|... .+.. ....|+......+..++ +.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45689999999999999999999742 1110 12234444443444333 899999
Q ss_pred ecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH
Q psy2970 71 DIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN 150 (329)
Q Consensus 71 DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~ 150 (329)
||||+.+|......+++.+|+++ +|+|+++.........
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aI-----------------------------------------lVvDa~~gv~~qt~~~ 126 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAV-----------------------------------------MVYCAVGGVQPQSETV 126 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEE-----------------------------------------EEEeCCCCCcHHHHHH
Confidence 99999999998999999999999 9999998655444333
Q ss_pred HHHHHHhCCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCC
Q psy2970 151 ELHALIEKPQLIGIPILVLGNKRDLPNA---LDEKELIDRIMI 190 (329)
Q Consensus 151 ~l~~i~~~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~ 190 (329)
+..+. ..++|+++|+||+|+... .-.+++.+.++.
T Consensus 127 -~~~~~----~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~ 164 (704)
T 2rdo_7 127 -WRQAN----KYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGA 164 (704)
T ss_pred -HHHHH----HcCCCEEEEEeCCCcccccHHHHHHHHHHHhCC
Confidence 33332 247899999999999765 234455555554
No 194
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.32 E-value=2.8e-12 Score=136.94 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=84.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC------------CCC------CCCCCceeeeEEEe----------------eCc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG------------QFS------QDMIPTVGFNMRKI----------------TKG 63 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~------------~~~------~~~~pTig~~~~~i----------------~~~ 63 (329)
.+..||+++|.+|+|||||+++|+.. .+. .....|++.....+ +++
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 34579999999999999999999853 111 01122443322221 334
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
++.+++|||||+.+|...+..+++.+|+++ +|+|+++..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ai-----------------------------------------lVvDa~~g~ 135 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGAL-----------------------------------------VVVDTIEGV 135 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEE-----------------------------------------EEEETTTBS
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEE-----------------------------------------EEEeCCCCC
Confidence 789999999999999999999999999999 999999988
Q ss_pred cHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 144 KLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 144 S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+++....|.. +.. .++|+++|+||+|+.
T Consensus 136 ~~qt~~~~~~-~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 136 CVQTETVLRQ-ALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp CHHHHHHHHH-HHH----TTCEEEEEEECHHHH
T ss_pred CHHHHHHHHH-HHH----cCCCeEEEEECCCcc
Confidence 8777655443 322 468999999999986
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.29 E-value=4e-12 Score=122.42 Aligned_cols=142 Identities=15% Similarity=0.133 Sum_probs=89.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcC------CCC---CCCCCce-------------------eeeEEE---------
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASG------QFS---QDMIPTV-------------------GFNMRK--------- 59 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~------~~~---~~~~pTi-------------------g~~~~~--------- 59 (329)
..+...|+++|.+|||||||++++... +.. .+...+. +..+..
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 346789999999999999999999632 100 0000000 011110
Q ss_pred -----------eeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhh
Q psy2970 60 -----------ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSL 128 (329)
Q Consensus 60 -----------i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (329)
++..++.+.|+||||.. .........+|.++
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~---~~~~~~~~~aD~vl----------------------------------- 197 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVG---QSEVAVANMVDTFV----------------------------------- 197 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCS---SHHHHHHTTCSEEE-----------------------------------
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCC---cHHHHHHHhCCEEE-----------------------------------
Confidence 12245788999999943 22334457888888
Q ss_pred hcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhH----HHHHHHh----------CCcEEE
Q psy2970 129 LFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE----KELIDRI----------MIDFWI 194 (329)
Q Consensus 129 ~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~----~~l~~~~----------~~~~~e 194 (329)
+|+|.+..+.+..+. ....+.|+++|+||+|+.+..+. +++.+.+ +.++++
T Consensus 198 ------~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~ 262 (355)
T 3p32_A 198 ------LLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLT 262 (355)
T ss_dssp ------EEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEE
T ss_pred ------EEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEE
Confidence 999987654432222 11234689999999999865332 2333332 578999
Q ss_pred EeccchHHHHHHhhhhc
Q psy2970 195 TLTLLIRWCESFLHHFG 211 (329)
Q Consensus 195 tSAk~~~~~~~~l~~i~ 211 (329)
+||+++.+++++++.+.
T Consensus 263 iSA~~g~Gi~~L~~~i~ 279 (355)
T 3p32_A 263 MSAVEGRGLAELWDTVE 279 (355)
T ss_dssp EBGGGTBSHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHH
Confidence 99999777777776664
No 196
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.28 E-value=2.1e-11 Score=119.07 Aligned_cols=73 Identities=22% Similarity=0.261 Sum_probs=49.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC------CCCCCceeeeEEE----------ee-------CceEEEEEEecCCCcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS------QDMIPTVGFNMRK----------IT-------KGNVTIKVWDIGGQPR 77 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~------~~~~pTig~~~~~----------i~-------~~~~~l~I~DtpG~e~ 77 (329)
++|+++|.||||||||+|++++.... ....|+++..... +. .....+++|||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57999999999999999999875421 1233444433110 00 1245799999999876
Q ss_pred cc-------chHHHHhhccceeE
Q psy2970 78 FR-------SMWERYCRGVNAIV 93 (329)
Q Consensus 78 ~~-------~~~~~~~~~ad~iI 93 (329)
.. ......++.+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii 104 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIA 104 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEE
T ss_pred cccccchHHHHHHHHHHhCCEEE
Confidence 52 12334678999999
No 197
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.21 E-value=1.4e-11 Score=108.56 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=87.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE------EeeCceEEEEEEecCCCccccchHH-H---Hhhc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR------KITKGNVTIKVWDIGGQPRFRSMWE-R---YCRG 88 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~------~i~~~~~~l~I~DtpG~e~~~~~~~-~---~~~~ 88 (329)
+..+|+++|.+|||||||++++...........++..+.. .+...+..+..+|++|......... . ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 5679999999999999999999865322111111111110 0112234455667766532211110 0 2234
Q ss_pred cceeEe-ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 89 VNAIVW-TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 89 ad~iI~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
.|.++| |.|.. ..| . .| ....+++++|+|+++... ....+. +. .+.|++
T Consensus 109 ~d~iiidt~G~~-~~~-----~--~~-------------~~~~~~~i~vvd~~~~~~--~~~~~~-~~------~~~~~i 158 (221)
T 2wsm_A 109 CDLLLIENVGNL-ICP-----V--DF-------------DLGENYRVVMVSVTEGDD--VVEKHP-EI------FRVADL 158 (221)
T ss_dssp CSEEEEEEEEBS-SGG-----G--GC-------------CCSCSEEEEEEEGGGCTT--HHHHCH-HH------HHTCSE
T ss_pred CCEEEEeCCCCC-CCC-----c--hh-------------ccccCcEEEEEeCCCcch--hhhhhh-hh------hhcCCE
Confidence 455552 11100 000 0 00 011244669999876532 111111 11 246889
Q ss_pred EEEEcCCCCCh-----hhHHHHHHHh--CCcEEEEeccchHHHHHHhhhhc
Q psy2970 168 VLGNKRDLPNA-----LDEKELIDRI--MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 168 LVgNK~Dl~~~-----~e~~~l~~~~--~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+||+|+.+. .+..+..+++ +.+++++||+++.+.+.+++.+.
T Consensus 159 iv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~ 209 (221)
T 2wsm_A 159 IVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLR 209 (221)
T ss_dssp EEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHH
T ss_pred EEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHH
Confidence 99999998643 3344444554 36899999999887888776654
No 198
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.19 E-value=9.1e-12 Score=112.67 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~ 41 (329)
.+...+++.|.+||||||+++++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 456789999999999999999997
No 199
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.16 E-value=5e-12 Score=111.74 Aligned_cols=164 Identities=13% Similarity=0.143 Sum_probs=88.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE------eeCceEEEEEEecCCCccccc-hHHHHh----
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK------ITKGNVTIKVWDIGGQPRFRS-MWERYC---- 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~------i~~~~~~l~I~DtpG~e~~~~-~~~~~~---- 86 (329)
++..+|+++|++|||||||++++....+...+.++++.++.. +...+......|+++...... .....+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 356899999999999999999999876655555666655421 111123444555554422110 001111
Q ss_pred -hccceeEeec-ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 87 -RGVNAIVWTG-GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 87 -~~ad~iI~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
.+.|.+++.. |. .. .+.+..........++|..+...... ..... .+.
T Consensus 116 ~~~~d~~~id~~g~-i~--------------------~~~s~~~~~~~~~~v~~~~~~~~~~~---~~~~~------~~~ 165 (226)
T 2hf9_A 116 LDEIDLLFIENVGN-LI--------------------CPADFDLGTHKRIVVISTTEGDDTIE---KHPGI------MKT 165 (226)
T ss_dssp GGGCSEEEEECCSC-SS--------------------GGGGCCCSCSEEEEEEEGGGCTTTTT---TCHHH------HTT
T ss_pred cCCCCEEEEeCCCC-cc--------------------CcchhhhccCcEEEEEecCcchhhHh---hhhhH------hhc
Confidence 1234444210 00 00 01111112233456777532211100 00111 146
Q ss_pred cEEEEEEcCCCCCh-----hhHHHHHHHh--CCcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLPNA-----LDEKELIDRI--MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~~~-----~e~~~l~~~~--~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|.++|+||+|+.+. .+..++++++ +.+++++||+++...+++++.+.
T Consensus 166 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 219 (226)
T 2hf9_A 166 ADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIE 219 (226)
T ss_dssp CSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred CCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHH
Confidence 88999999998653 3344555655 57899999999877777776553
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.14 E-value=1.1e-10 Score=112.64 Aligned_cols=140 Identities=16% Similarity=0.117 Sum_probs=81.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC------CCC-CCCCCcee---------------------eeEE------------
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG------QFS-QDMIPTVG---------------------FNMR------------ 58 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~------~~~-~~~~pTig---------------------~~~~------------ 58 (329)
....|.++|.||||||||+|++.+. +.. ....|+.. ..+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 3689999999999999999999851 110 00001100 0000
Q ss_pred --------EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhc
Q psy2970 59 --------KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLF 130 (329)
Q Consensus 59 --------~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (329)
.++..++.+.++||+|... ......+.+|.++
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~---~~~~l~~~~d~vl------------------------------------- 192 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQ---SEFAVADMVDMFV------------------------------------- 192 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC-----CHHHHHTTCSEEE-------------------------------------
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcch---hhhhHHhhCCEEE-------------------------------------
Confidence 0122456788999999532 1233456788888
Q ss_pred ceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh----HHHHHHH----------hCCcEEEEe
Q psy2970 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD----EKELIDR----------IMIDFWITL 196 (329)
Q Consensus 131 ~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e----~~~l~~~----------~~~~~~etS 196 (329)
+|+|.++....+.... .+ .+.|.++|+||+|+.+... ..++... ...+++.+|
T Consensus 193 ----~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iS 259 (349)
T 2www_A 193 ----LLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRIS 259 (349)
T ss_dssp ----EEECCC---------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECC
T ss_pred ----EEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEe
Confidence 9999886543221111 12 2457899999999976432 2233321 135689999
Q ss_pred ccchHHHHHHhhhhc
Q psy2970 197 TLLIRWCESFLHHFG 211 (329)
Q Consensus 197 Ak~~~~~~~~l~~i~ 211 (329)
|+++.+.+++.+.+.
T Consensus 260 A~~g~Gi~~L~~~I~ 274 (349)
T 2www_A 260 ARSGEGISEMWDKMK 274 (349)
T ss_dssp TTTCTTHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 999777777776654
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.08 E-value=6.1e-11 Score=113.69 Aligned_cols=96 Identities=16% Similarity=0.126 Sum_probs=59.6
Q ss_pred ceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc
Q psy2970 63 GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT 142 (329)
Q Consensus 63 ~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~ 142 (329)
.++.+.++||||..... ....+.+|.++ +|+|.++.
T Consensus 147 ~~~~i~liDTpG~~~~~---~~~~~~aD~vl-----------------------------------------~Vvd~~~~ 182 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSE---TEVARMVDCFI-----------------------------------------SLQIAGGG 182 (341)
T ss_dssp TTCSEEEEEEECCTTHH---HHHHTTCSEEE-----------------------------------------EEECC---
T ss_pred cCCCEEEEeCCCccchH---HHHHHhCCEEE-----------------------------------------EEEeCCcc
Confidence 45789999999965432 23457888888 99998754
Q ss_pred ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHH----HHHH---Hh-------CCcEEEEeccchHHHHHHhh
Q psy2970 143 DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK----ELID---RI-------MIDFWITLTLLIRWCESFLH 208 (329)
Q Consensus 143 ~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~----~l~~---~~-------~~~~~etSAk~~~~~~~~l~ 208 (329)
+.++.+.. . ..+.|.++|+||+|+.+..+.. ++.+ .+ ..+++++||+++.+.+.+.+
T Consensus 183 ~~~~~l~~---~------~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~ 253 (341)
T 2p67_A 183 DDLQGIKK---G------LMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWH 253 (341)
T ss_dssp ---CCCCH---H------HHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHH
T ss_pred HHHHHHHH---h------hhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHH
Confidence 32211110 0 1246789999999998753322 2322 22 35689999999777777776
Q ss_pred hhc
Q psy2970 209 HFG 211 (329)
Q Consensus 209 ~i~ 211 (329)
.+.
T Consensus 254 ~l~ 256 (341)
T 2p67_A 254 AII 256 (341)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 202
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.07 E-value=3.4e-10 Score=110.87 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-CCceeeeEEEeeCceEEEEEEecCCCccccc-------hHHHHhhccce
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDM-IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-------MWERYCRGVNA 91 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~-~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~-------~~~~~~~~ad~ 91 (329)
.+|.++|.||||||||+|++++.+.. ..| ..|+......+...+.++++.||||...-.. ..-...+.+|.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 58999999999999999999987653 223 3455566666778889999999999643211 12235677888
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCccc-HHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK-LEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S-~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
++ +|+|+++|.. .+.+...+... .....+.|.+++.
T Consensus 153 il-----------------------------------------~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~ 189 (376)
T 4a9a_A 153 LF-----------------------------------------IILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILI 189 (376)
T ss_dssp EE-----------------------------------------EEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEE
T ss_pred cc-----------------------------------------cccccCccHHHHHHHHHHHHHh--hHhhccCChhhhh
Confidence 88 9999998742 22222222222 1123467888999
Q ss_pred EcCCCC
Q psy2970 171 NKRDLP 176 (329)
Q Consensus 171 NK~Dl~ 176 (329)
||.|..
T Consensus 190 nK~d~~ 195 (376)
T 4a9a_A 190 KKKEKG 195 (376)
T ss_dssp EECSSS
T ss_pred hHhhhh
Confidence 999974
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.02 E-value=7.9e-10 Score=117.06 Aligned_cols=43 Identities=26% Similarity=0.381 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcC---CCCceEEEEEcCCCCCHHHHHHHHHcCCC
Q psy2970 3 VLLNRILDWFKSLF---WKEEMELTLVGLQCSGKTTFVNVIASGQF 45 (329)
Q Consensus 3 ~~~~~~~~~~~~~~---~~k~lkIlllG~~gvGKSSLin~l~~~~~ 45 (329)
.+++++.|-++++- .-.-.+|+|+|.+++|||||+|++++.++
T Consensus 31 ~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 31 PLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp HHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 46778888777663 23457999999999999999999999876
No 204
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.96 E-value=6.3e-09 Score=106.28 Aligned_cols=127 Identities=15% Similarity=0.164 Sum_probs=91.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC-------------C-----CC------CCCCCceeeeEEEeeCceEEEEEEecCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG-------------Q-----FS------QDMIPTVGFNMRKITKGNVTIKVWDIGG 74 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~-------------~-----~~------~~~~pTig~~~~~i~~~~~~l~I~DtpG 74 (329)
+.=+|.|+|..++|||||..+|+.. . +. .+..-|+......+..++..++|.||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 3468999999999999999999521 0 00 1111223333335678889999999999
Q ss_pred CccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHH
Q psy2970 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHA 154 (329)
Q Consensus 75 ~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~ 154 (329)
..+|.......++-+|+.+ +|+|+..--.-+.. ..++.
T Consensus 110 HvDF~~Ev~raL~~~DgAv-----------------------------------------lVvda~~GV~~qT~-~v~~~ 147 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSAL-----------------------------------------VVIDAAKGVEAQTR-KLMDV 147 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEE-----------------------------------------EEEETTTBSCHHHH-HHHHH
T ss_pred cHHHHHHHHHHHHhcCceE-----------------------------------------EEeecCCCcccccH-HHHHH
Confidence 9999999999999999999 99999864332333 33344
Q ss_pred HHhCCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLPNA---LDEKELIDRIMID 191 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~ 191 (329)
+.+ .++|++++.||+|.+.. .-.+++.+.++..
T Consensus 148 a~~----~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~ 183 (548)
T 3vqt_A 148 CRM----RATPVMTFVNKMDREALHPLDVMADIEQHLQIE 183 (548)
T ss_dssp HHH----TTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSE
T ss_pred HHH----hCCceEEEEecccchhcchhHhhhhhhhhcCCc
Confidence 433 57999999999999876 3467777888754
No 205
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.81 E-value=6.7e-09 Score=102.45 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=46.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCC--CCceeeeEEEee--Cc---------------eEEEEEEecCCCcc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDM--IPTVGFNMRKIT--KG---------------NVTIKVWDIGGQPR 77 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~--~pTig~~~~~i~--~~---------------~~~l~I~DtpG~e~ 77 (329)
.+..++|.++|.+|||||||+|++++..+.... ..|++.+...+. +. ...+.+|||||+..
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 356789999999999999999999988653222 223333333221 11 23599999999886
Q ss_pred ccc-------hHHHHhhccceeE
Q psy2970 78 FRS-------MWERYCRGVNAIV 93 (329)
Q Consensus 78 ~~~-------~~~~~~~~ad~iI 93 (329)
... .+..+++++|+++
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il 121 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIF 121 (396)
T ss_dssp --------CCHHHHHHHTSSSEE
T ss_pred ccchhhHHHHHHHHHHHhcCeEE
Confidence 543 4567889999999
No 206
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.81 E-value=8.4e-09 Score=94.35 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=98.3
Q ss_pred HHHHhcCCCCceEEEEEcCC-CCCHHHHHHHHHcCC-CC------CCCCCcee--eeEEEeeCc-e--------------
Q psy2970 10 DWFKSLFWKEEMELTLVGLQ-CSGKTTFVNVIASGQ-FS------QDMIPTVG--FNMRKITKG-N-------------- 64 (329)
Q Consensus 10 ~~~~~~~~~k~lkIlllG~~-gvGKSSLin~l~~~~-~~------~~~~pTig--~~~~~i~~~-~-------------- 64 (329)
+|+.+++.+.+.++++.|++ +-=+.+|+.+++..+ .. ......+| +.+. +++. .
T Consensus 6 ~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~-~~~~~~fni~tlys~~~~er 84 (227)
T 3l82_B 6 SFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQ-LNNQHKFNILILYSTTRKER 84 (227)
T ss_dssp CSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEE-SSSSCEEEEEECSCC-----
T ss_pred HHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEE-ECCeeEEEEEEeccCcHHHh
Confidence 35678888999999999973 334668999998754 21 11112222 1111 1100 0
Q ss_pred -----------EEEEEE------ecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhh
Q psy2970 65 -----------VTIKVW------DIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLS 127 (329)
Q Consensus 65 -----------~~l~I~------DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (329)
-++-.. |.+||+.++.+|+.|++++|++|
T Consensus 85 ~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglI---------------------------------- 130 (227)
T 3l82_B 85 DRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFI---------------------------------- 130 (227)
T ss_dssp --------------------------------CCHHHHHHHCSEEE----------------------------------
T ss_pred hhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEE----------------------------------
Confidence 012222 33489999999999999999999
Q ss_pred hhcceeEEEEECCCcccHHHHHHHH---HHHHhCCc-CCCCcEEEEEEcC-CCCChhhHHHHHHHhCC-------cEEEE
Q psy2970 128 LLFQLIKYMVDAADTDKLEASRNEL---HALIEKPQ-LIGIPILVLGNKR-DLPNALDEKELIDRIMI-------DFWIT 195 (329)
Q Consensus 128 ~~~~~~~lV~Dvt~~~S~~~~~~~l---~~i~~~~~-~~~iPIiLVgNK~-Dl~~~~e~~~l~~~~~~-------~~~et 195 (329)
||+|.+|++.++ .+..+ ..+++... ..++|++|++||. |++++....++++.+++ ....|
T Consensus 131 -------fVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W~Iq~c 202 (227)
T 3l82_B 131 -------YVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDT 202 (227)
T ss_dssp -------EEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEEEE
T ss_pred -------EEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCEEEEEe
Confidence 999999987765 66655 34444332 3789999999995 89888888888888875 27889
Q ss_pred eccchHHHHHHh
Q psy2970 196 LTLLIRWCESFL 207 (329)
Q Consensus 196 SAk~~~~~~~~l 207 (329)
||+++.++.+-+
T Consensus 203 sA~TGeGL~EGL 214 (227)
T 3l82_B 203 EAETLTGFLNGI 214 (227)
T ss_dssp ETTTCTTHHHHH
T ss_pred ECCCCcCHHHHH
Confidence 999976666544
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.79 E-value=1.5e-08 Score=95.56 Aligned_cols=93 Identities=11% Similarity=-0.015 Sum_probs=75.8
Q ss_pred CccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc-cHHHHHHHHH
Q psy2970 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD-KLEASRNELH 153 (329)
Q Consensus 75 ~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~-S~~~~~~~l~ 153 (329)
+++++.+.+.+++++|.++ +|+|+++++ +++.+..|+.
T Consensus 66 ~er~~~l~r~~~~naD~vl-----------------------------------------iV~d~~~p~~s~~~l~~~l~ 104 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVI-----------------------------------------IVETLKMPEFNNYLLDNMLV 104 (302)
T ss_dssp CCCSCEEETTEEESCCEEE-----------------------------------------EEECSTTTTCCHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEE-----------------------------------------EEEECCCCCCCHHHHHHHHH
Confidence 7788888888999999999 999999986 8888888887
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCCChh------hHHHHHHHhCCcEEEEeccchHHHHHHhhhhcC
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLPNAL------DEKELIDRIMIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~~~~------e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
.+.. .++|+++|+||+|+.++. +..++.++++++++++||+++.+.++++..+..
T Consensus 105 ~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 105 VYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp HHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred HHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccC
Confidence 6543 579999999999998653 234455667899999999998888888876643
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.77 E-value=1.9e-08 Score=96.58 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~ 41 (329)
.+...+.++|++|||||||++.+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999997
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.73 E-value=1.4e-07 Score=92.75 Aligned_cols=77 Identities=23% Similarity=0.391 Sum_probs=50.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCC--ceeeeEEEe--eCc---------------eEEEEEEecCCCcc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF-SQDMIP--TVGFNMRKI--TKG---------------NVTIKVWDIGGQPR 77 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~-~~~~~p--Tig~~~~~i--~~~---------------~~~l~I~DtpG~e~ 77 (329)
++..++.++|++|||||||+|++++... .....| |+..+...+ .+. ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4568999999999999999999999765 222222 222222222 211 14689999999543
Q ss_pred -------ccchHHHHhhccceeEe
Q psy2970 78 -------FRSMWERYCRGVNAIVW 94 (329)
Q Consensus 78 -------~~~~~~~~~~~ad~iI~ 94 (329)
+.+.....++.+|+++.
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~ 121 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQ 121 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33345567788998883
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.70 E-value=1.8e-07 Score=97.97 Aligned_cols=124 Identities=20% Similarity=0.160 Sum_probs=83.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc--------CCCCC-----C-------CCCceeeeEEEe-------eCceEEEEEEecC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS--------GQFSQ-----D-------MIPTVGFNMRKI-------TKGNVTIKVWDIG 73 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~--------~~~~~-----~-------~~pTig~~~~~i-------~~~~~~l~I~Dtp 73 (329)
-+|.|+|...+|||||..+|+. ++... + ..-|+......+ +.+++.+++.|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 3799999999999999999962 11110 0 001111111111 2347899999999
Q ss_pred CCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHH
Q psy2970 74 GQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELH 153 (329)
Q Consensus 74 G~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~ 153 (329)
|+.+|.......++-+|+.+ +|+|+..--.- .....++
T Consensus 94 GHvDF~~Ev~~aLr~~Dgav-----------------------------------------lvVDaveGV~~-qT~~v~~ 131 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAV-----------------------------------------VVFCGTSGVEP-QSETVWR 131 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEE-----------------------------------------EEEETTTCSCH-HHHHHHH
T ss_pred CCcccHHHHHHHHHHhCeEE-----------------------------------------EEEECCCCCch-hHHHHHH
Confidence 99999999899999999999 99998763222 2233344
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCC
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLPNA---LDEKELIDRIMI 190 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~ 190 (329)
...+ .++|.++|.||+|.... ...+++.+.++.
T Consensus 132 ~a~~----~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~ 167 (709)
T 4fn5_A 132 QANK----YGVPRIVYVNKMDRQGANFLRVVEQIKKRLGH 167 (709)
T ss_dssp HHHH----HTCCEEEEEECSSSTTCCHHHHHHHHHHHHCS
T ss_pred HHHH----cCCCeEEEEccccccCccHHHHHHHhhhhccc
Confidence 4433 47899999999999765 346667777764
No 211
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.62 E-value=1.3e-08 Score=105.51 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=86.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--CCCC-----------CCC-------CCceeeeEEEeeCceEEEEEEecCCCccccch
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS--GQFS-----------QDM-------IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~--~~~~-----------~~~-------~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~ 81 (329)
+|.++|..++|||||..+|+. +.+. .++ .-|+......+..++..+++.||||+.+|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 689999999999999999962 1111 000 11222222345678889999999999999998
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
....++-+|+.+ +|+|+..--.-+ ....++.+.+
T Consensus 84 v~raL~~~Dgav-----------------------------------------lVVDa~~GV~~q-T~~v~~~a~~---- 117 (638)
T 3j25_A 84 VYRSLSVLDGAI-----------------------------------------LLISAKDGVQAQ-TRILFHALRK---- 117 (638)
T ss_dssp HHHHHTTCSEEE-----------------------------------------CCEESSCTTCSH-HHHHHHHHHH----
T ss_pred HHHHHHHhCEEE-----------------------------------------EEEeCCCCCcHH-HHHHHHHHHH----
Confidence 889999999999 999987532112 2233333332
Q ss_pred CCCcEEEEEEcCCCCCh---hhHHHHHHHhCC
Q psy2970 162 IGIPILVLGNKRDLPNA---LDEKELIDRIMI 190 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~ 190 (329)
.++|.+++.||+|.... ...+++.+.++.
T Consensus 118 ~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~ 149 (638)
T 3j25_A 118 MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSA 149 (638)
T ss_dssp HTCSCEECCEECCSSSCCSHHHHHHHHHTTCC
T ss_pred cCCCeEEEEeccccccCCHHHHHHHHHHHhCC
Confidence 46899999999999775 345666666653
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.59 E-value=4.1e-08 Score=93.60 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=71.7
Q ss_pred cCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHH
Q psy2970 72 IGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNE 151 (329)
Q Consensus 72 tpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~ 151 (329)
.+||+.++.+|+.|++++|++| ||+|.+|++.++ .+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglI-----------------------------------------fVVDSsDreRle-ak~E 231 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFI-----------------------------------------YVANAEAHKRHE-WQDE 231 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEE-----------------------------------------ECCBCBTTCCCC-HHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEE-----------------------------------------EEecCCcHhHHH-HHHH
Confidence 5689999999999999999999 999999998766 4444
Q ss_pred HH---HHHhCCc-CCCCcEEEEEEc-CCCCChhhHHHHHHHhCCc-------EEEEeccchHHHHHHh
Q psy2970 152 LH---ALIEKPQ-LIGIPILVLGNK-RDLPNALDEKELIDRIMID-------FWITLTLLIRWCESFL 207 (329)
Q Consensus 152 l~---~i~~~~~-~~~iPIiLVgNK-~Dl~~~~e~~~l~~~~~~~-------~~etSAk~~~~~~~~l 207 (329)
+. .+++... ..++|++|++|| .|++++....++++.+++. ...|||.++.++.+-+
T Consensus 232 L~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGl 299 (312)
T 3l2o_B 232 FSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGI 299 (312)
T ss_dssp HHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHH
T ss_pred HHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHH
Confidence 43 3443322 368999999997 5999888888888888752 7889999966655533
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.57 E-value=1.8e-08 Score=97.82 Aligned_cols=56 Identities=23% Similarity=0.368 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC------CCCCCCCC--ceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG------QFSQDMIP--TVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~------~~~~~~~p--Tig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
..+|+++|.+|||||||+|++.+. .......| |.......++.+ +.++||||....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~ 225 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINH 225 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCC
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcH
Confidence 468999999999999999999975 23222222 332222223322 789999997543
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.44 E-value=6.6e-08 Score=93.88 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=36.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC------CC-CCCCC--ceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ------FS-QDMIP--TVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~------~~-~~~~p--Tig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
+..+|+++|.+|||||||+|++.+.. .. ....| |.......+..+ +.++||||....
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~ 224 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINH 224 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCT
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcH
Confidence 34689999999999999999998752 11 11222 222222222222 789999997543
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.26 E-value=7.1e-06 Score=83.12 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~ 41 (329)
+...|+++|.+||||||+++++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.22 E-value=8.2e-06 Score=81.16 Aligned_cols=56 Identities=16% Similarity=0.317 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCceeeeEEE--eeCc--eEEEEEEecCCCc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQD----MIPTVGFNMRK--ITKG--NVTIKVWDIGGQP 76 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~----~~pTig~~~~~--i~~~--~~~l~I~DtpG~e 76 (329)
++++|+|++|+|||||+|.+.+..+... ..+........ +... ...+.++|++|..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 5699999999999999999998654211 11211111111 1222 2368899999864
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.14 E-value=1.4e-05 Score=74.24 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+++++++|++|+|||||+|.+.+.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999863
No 218
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.12 E-value=2.8e-06 Score=79.50 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=36.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEeeCceEEEEEEecCCCcc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRKITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~ 77 (329)
.++.++|+++|.||||||||+|++.+.... ....|.+......+.. +..+.++||||...
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGILW 177 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcCC
Confidence 356789999999999999999999987632 2222221111111111 12578999999653
No 219
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.06 E-value=1.8e-06 Score=79.96 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeee--EEEeeCceEEEEEEecCCCccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN--MRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~--~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
++++++|.+|||||||+|++.+..... ..++.|.. ...+.. +..+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEEC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEe-CCCEEEEECCCcccC
Confidence 699999999999999999999876531 12222221 111221 125789999997643
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.00 E-value=4.8e-06 Score=80.71 Aligned_cols=89 Identities=17% Similarity=0.137 Sum_probs=64.8
Q ss_pred CCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHH
Q psy2970 74 GQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELH 153 (329)
Q Consensus 74 G~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~ 153 (329)
.+++|+..+..+.+.++.++ +|+|++|+. ..|..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il-----------------------------------------~VvD~~d~~-----~~~~~ 88 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVV-----------------------------------------KIVDIFDFN-----GSWLP 88 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEE-----------------------------------------EEEETTSHH-----HHCCT
T ss_pred CHHHHHHHHHHHhccCcEEE-----------------------------------------EEEECCCCc-----ccHHH
Confidence 46889999999999999999 999999853 22322
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCCChh----hHH----HHHHHhCC---cEEEEeccchHHHHHHhhhh
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLPNAL----DEK----ELIDRIMI---DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~~~~----e~~----~l~~~~~~---~~~etSAk~~~~~~~~l~~i 210 (329)
++.+. ..+.|+++|+||+|+.+.. +.+ +++++.+. +++++||+++.+.+++++.+
T Consensus 89 ~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l 154 (368)
T 3h2y_A 89 GLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAI 154 (368)
T ss_dssp THHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhh
Confidence 23222 2378999999999996542 233 33666777 79999999987778777666
No 221
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.88 E-value=7.3e-06 Score=79.41 Aligned_cols=89 Identities=20% Similarity=0.197 Sum_probs=63.7
Q ss_pred CCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHH
Q psy2970 74 GQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELH 153 (329)
Q Consensus 74 G~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~ 153 (329)
.+++|+....++++.++.++ +|+|++++++ .+...+.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil-----------------------------------------~VvD~~d~~~--s~~~~l~ 93 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVV-----------------------------------------NIVDIFDFNG--SFIPGLP 93 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEE-----------------------------------------EEEETTCSGG--GCCSSHH
T ss_pred CHHHHHHHHHHhhccCcEEE-----------------------------------------EEEECCCCCC--chhhHHH
Confidence 58899999999989999999 9999999763 1111222
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCCCh----hhHH----HHHHHhCC---cEEEEeccchHHHHHHhhhh
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLPNA----LDEK----ELIDRIMI---DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~~~----~e~~----~l~~~~~~---~~~etSAk~~~~~~~~l~~i 210 (329)
+. ..+.|+++|+||+|+.+. ...+ +..++.+. +++.+||+++.+.+++++.+
T Consensus 94 ~~-----l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I 156 (369)
T 3ec1_A 94 RF-----AADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAI 156 (369)
T ss_dssp HH-----CTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHH
T ss_pred HH-----hCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHH
Confidence 22 236899999999999654 1222 23556676 68999999977777777666
No 222
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.76 E-value=0.00011 Score=72.50 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+...+.++|++|+|||||+|.+.+-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999983
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.71 E-value=3.3e-05 Score=72.18 Aligned_cols=91 Identities=13% Similarity=0.048 Sum_probs=59.0
Q ss_pred EEecCCCc-cccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHH
Q psy2970 69 VWDIGGQP-RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEA 147 (329)
Q Consensus 69 I~DtpG~e-~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~ 147 (329)
|-+.||+. .........++.+|.++ .|+|+.++.+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl-----------------------------------------~VvDAr~p~~~~~ 41 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVY-----------------------------------------ELVDARIPMSSRN 41 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEE-----------------------------------------EEEETTSTTTTSC
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEE-----------------------------------------EEEeCCCCCccCC
Confidence 44578875 33445566788999999 9999999876542
Q ss_pred HHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHH---HhCCcEEEEeccchHHHHHHh
Q psy2970 148 SRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID---RIMIDFWITLTLLIRWCESFL 207 (329)
Q Consensus 148 ~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~---~~~~~~~etSAk~~~~~~~~l 207 (329)
..+.+++ .+.|+++|+||+|+.+....+.+.+ +.+++++.+||++....+++.
T Consensus 42 --~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~ 97 (282)
T 1puj_A 42 --PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIV 97 (282)
T ss_dssp --HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHH
T ss_pred --HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccHHHHH
Confidence 1122332 4689999999999988655444444 447899999999854444443
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.70 E-value=5.3e-05 Score=75.20 Aligned_cols=23 Identities=43% Similarity=0.501 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|+++|.+||||||+++.+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.65 E-value=5e-05 Score=78.38 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=45.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCC-----CCCceeeeEEEe---eCceEEEEEEecCCCcc
Q psy2970 8 ILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQD-----MIPTVGFNMRKI---TKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 8 ~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~-----~~pTig~~~~~i---~~~~~~l~I~DtpG~e~ 77 (329)
.+..+..+ ......|+|+|.||||||||+|++++....-. ...|.|...... ...+..+.++||||...
T Consensus 27 al~~L~~i-~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 27 ALKILSAI-TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp HHHHHHTC-CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred HHHHHHhc-cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 44455554 45568899999999999999999998763211 123334432211 23456789999999754
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.60 E-value=0.00058 Score=68.15 Aligned_cols=57 Identities=12% Similarity=-0.085 Sum_probs=34.9
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEecc
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLTL 198 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSAk 198 (329)
+|+|.+....- ......+.+. -.+..||.||.|.... -.+..+....+.|...++.-
T Consensus 218 LVvDA~~gq~a---~~~a~~f~~~----~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~G 275 (443)
T 3dm5_A 218 LVIDGTIGQQA---YNQALAFKEA----TPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTG 275 (443)
T ss_dssp EEEEGGGGGGH---HHHHHHHHHS----CTTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEECS
T ss_pred EEEeCCCchhH---HHHHHHHHhh----CCCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEcC
Confidence 99998754322 2222333222 1345689999999765 33556667788887766653
No 227
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.51 E-value=2.7e-05 Score=77.30 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=45.8
Q ss_pred cCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCcc--ccchH------
Q psy2970 15 LFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPR--FRSMW------ 82 (329)
Q Consensus 15 ~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~--~~~~~------ 82 (329)
.+.++..+|+++|.+|+||||+.+++...-.. ...+|.+..... ..+......+||..|++. .+..+
T Consensus 34 ~~~~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~ 112 (469)
T 1bif_A 34 CMTNCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALN 112 (469)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999764221 123444433211 112224456899999743 33333
Q ss_pred --HHHhhccceeE
Q psy2970 83 --ERYCRGVNAIV 93 (329)
Q Consensus 83 --~~~~~~ad~iI 93 (329)
..++..+++.+
T Consensus 113 ~~~~~l~~~~G~~ 125 (469)
T 1bif_A 113 DVRKFLSEEGGHV 125 (469)
T ss_dssp HHHHHHHTTCCSE
T ss_pred HHHHHHHhCCCCE
Confidence 44555566666
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.31 E-value=0.0014 Score=61.71 Aligned_cols=55 Identities=9% Similarity=-0.072 Sum_probs=34.0
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIP-ILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|+|.+... +.....+.+.+ ..| ..+|.||.|.... ..+.++....+.|...++.
T Consensus 218 lVvda~~g~---~~~~~~~~~~~-----~~~i~gvVlnk~D~~~~~g~~~~~~~~~~~pi~~i~~ 274 (297)
T 1j8m_F 218 LVIDASIGQ---KAYDLASKFNQ-----ASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGT 274 (297)
T ss_dssp EEEEGGGGG---GHHHHHHHHHH-----TCTTEEEEEECGGGCTTHHHHHHHHHTTTCCEEEEEC
T ss_pred EEeeCCchH---HHHHHHHHHHh-----hCCCCEEEEeCCCCCcchHHHHHHHHHHCcCEEEEeC
Confidence 899986432 22222333322 245 6789999998654 3356677888888777653
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.27 E-value=0.0008 Score=66.92 Aligned_cols=57 Identities=14% Similarity=-0.091 Sum_probs=35.7
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEecc
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLTL 198 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSAk 198 (329)
+|+|.+.-..-.+....+.+. -.+..||.||.|.... -.+-.+....+.|...++.-
T Consensus 217 LVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD~~a~~G~als~~~~~g~Pi~fig~G 274 (433)
T 3kl4_A 217 LVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGTG 274 (433)
T ss_dssp EEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGGGCSCHHHHHHHHHHHTCEEEEEECC
T ss_pred EEEeCccchHHHHHHHHHhcc-------cCCcEEEEecccccccchHHHHHHHHHCCCEEEEECC
Confidence 999987543333333333322 1346789999998754 33556677789987766654
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.15 E-value=0.00068 Score=69.81 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
.|+|+|++|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998864
No 231
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.07 E-value=0.00039 Score=64.22 Aligned_cols=69 Identities=14% Similarity=-0.040 Sum_probs=49.9
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHH---HHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL---IDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l---~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.|+|+.++.+..... +. + . ++|.++|+||+|+.+....+++ .++.+.+. .+||++....+++.+.+.
T Consensus 27 ~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 27 EVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSF 96 (262)
T ss_dssp EEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCC
T ss_pred EEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHH
Confidence 999999886543211 11 1 1 7899999999999886544443 34457888 999999888888887776
Q ss_pred CC
Q psy2970 212 SH 213 (329)
Q Consensus 212 ~~ 213 (329)
..
T Consensus 97 ~~ 98 (262)
T 3cnl_A 97 DR 98 (262)
T ss_dssp CT
T ss_pred Hh
Confidence 54
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.87 E-value=0.0014 Score=62.55 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.--++++|++||||||+++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 233
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.80 E-value=0.013 Score=50.09 Aligned_cols=57 Identities=11% Similarity=-0.017 Sum_probs=35.8
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCC-cCCCCcEEEEEEcCCCCCh--hhHHHHHHHhCCcEE
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKP-QLIGIPILVLGNKRDLPNA--LDEKELIDRIMIDFW 193 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~-~~~~iPIiLVgNK~Dl~~~--~e~~~l~~~~~~~~~ 193 (329)
++++.+.. + ......+..+.+.. ...+.++.+|.||.|.... .+..+..++++.+++
T Consensus 103 iv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 103 IPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLKESIKDTGVKAF 162 (206)
T ss_dssp EEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHHHHHHHHHTCCBC
T ss_pred EEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHHHHHHHHcCCcee
Confidence 88876543 3 55555555443321 1345778999999996543 456666777787765
No 234
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.77 E-value=0.021 Score=52.59 Aligned_cols=76 Identities=11% Similarity=0.001 Sum_probs=48.2
Q ss_pred hhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE-EEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHH
Q psy2970 128 LLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL-VLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESF 206 (329)
Q Consensus 128 ~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi-LVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~ 206 (329)
...+.+++|.+. +..++..+...+..+.+.....+.+++ +|.||.|- ....+++.+.++.+++..-.....+.++.
T Consensus 178 ~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~--~~~~~~~~~~~g~~v~~~Ip~~~~v~~a~ 254 (307)
T 3end_A 178 QHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA--TDEVDRFCKETNFRRLAHMPDLDAIRRSR 254 (307)
T ss_dssp GTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC--CHHHHHHHHHHTCCEEEEECCCHHHHHHH
T ss_pred HHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc--HHHHHHHHHHcCCCceeeCCccHHHHHHH
Confidence 345556677765 455566666666666543233566765 89999994 35577888899998876544444444443
No 235
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.71 E-value=0.0014 Score=62.15 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=48.9
Q ss_pred ceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh----HHHHHH---HhCCcEEEEeccchHHH
Q psy2970 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD----EKELID---RIMIDFWITLTLLIRWC 203 (329)
Q Consensus 131 ~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e----~~~l~~---~~~~~~~etSAk~~~~~ 203 (329)
|.+++|+|+.+|..-....+-+....+ ..++|.+||.||+|+.++.+ .+++.+ ..|.+.+.+||++....
T Consensus 88 D~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~ 164 (307)
T 1t9h_A 88 DQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSL 164 (307)
T ss_dssp CEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTC
T ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCH
Confidence 334499999877543333222222222 35789999999999987633 445554 45789999999886655
Q ss_pred HHHhhh
Q psy2970 204 ESFLHH 209 (329)
Q Consensus 204 ~~~l~~ 209 (329)
++++..
T Consensus 165 ~~L~~~ 170 (307)
T 1t9h_A 165 ADIIPH 170 (307)
T ss_dssp TTTGGG
T ss_pred HHHHhh
Confidence 555443
No 236
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.64 E-value=0.0019 Score=60.97 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.--|+++|++||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45789999999999999999964
No 237
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.57 E-value=0.0021 Score=64.18 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=40.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC------------------CCC---CCCCCceeeeEEE-------eeCceEEEEEE
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG------------------QFS---QDMIPTVGFNMRK-------ITKGNVTIKVW 70 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~------------------~~~---~~~~pTig~~~~~-------i~~~~~~l~I~ 70 (329)
+-.-|.|+|++++|||||+|++++. .|. +....|.|+-... .++.+..+.+.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 4456889999999999999999853 222 1222344543331 13456889999
Q ss_pred ecCCCccc
Q psy2970 71 DIGGQPRF 78 (329)
Q Consensus 71 DtpG~e~~ 78 (329)
||+|..+.
T Consensus 146 DTeG~~~~ 153 (447)
T 3q5d_A 146 DTQGTFDS 153 (447)
T ss_dssp EEECCCSS
T ss_pred cCCccccc
Confidence 99997543
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.56 E-value=0.022 Score=56.37 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~ 41 (329)
...|+++|.+||||||++..+.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578889999999999999986
No 239
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.25 E-value=0.005 Score=62.34 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.--++|+|.+|||||||++.+.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345789999999999999999864
No 240
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.20 E-value=0.0035 Score=54.73 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 4 LLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 4 ~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++..+...+... .++...|.|+|++|+|||||++.+.+
T Consensus 7 ~~~~~~~~~~~~-~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR-QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT-CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 333444444333 35667899999999999999999876
No 241
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.14 E-value=0.0028 Score=54.95 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999764
No 242
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.10 E-value=0.0047 Score=52.30 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 6 NRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 6 ~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..+..+..++.-.+.-.++++|++|+|||||++.+.+.
T Consensus 24 ~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 24 LTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 44455555554444567999999999999999998753
No 243
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.03 E-value=0.0031 Score=53.91 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-++|+|++|||||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999864
No 244
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.00 E-value=0.0072 Score=57.12 Aligned_cols=58 Identities=10% Similarity=-0.011 Sum_probs=34.0
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEecc
Q psy2970 134 KYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLTL 198 (329)
Q Consensus 134 ~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSAk 198 (329)
++|+|.+.. .+.......+.+. .++ .-+|.||.|.... -.+.++....+.|...+..-
T Consensus 227 llVlda~t~---~~~l~~a~~~~~~---~~i-~gvVlTk~D~~~~gG~~l~~~~~~~~Pi~~i~~G 285 (306)
T 1vma_A 227 LLVIDATTG---QNGLVQAKIFKEA---VNV-TGIILTKLDGTAKGGITLAIARELGIPIKFIGVG 285 (306)
T ss_dssp EEEEEGGGH---HHHHHHHHHHHHH---SCC-CEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECS
T ss_pred EEEEECCCC---HHHHHHHHHHHhc---CCC-CEEEEeCCCCccchHHHHHHHHHHCCCEEEEeCC
Confidence 388898632 2222222333221 222 2466799997554 34778888999987776553
No 245
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.98 E-value=0.025 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.--|+++|.+|+||||++..+..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999853
No 246
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.87 E-value=0.0055 Score=51.98 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+.-.|+++|++|+|||||++.+.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456999999999999999999875
No 247
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.85 E-value=0.0041 Score=54.23 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
-.++|+|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 248
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.77 E-value=0.0046 Score=52.93 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
--++++|++|||||||++.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45899999999999999999874
No 249
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.70 E-value=0.013 Score=50.87 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 4 LLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 4 ~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++..+.+...+....+..-|.++|.+|+||||+++.+.+
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455566666655445667899999999999999999865
No 250
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.63 E-value=0.0055 Score=52.52 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
++|+|++|+|||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999864
No 251
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.59 E-value=0.0069 Score=49.62 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q psy2970 21 MELTLVGLQCSGKTTFVNVI 40 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l 40 (329)
+-|++.|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 252
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.56 E-value=0.0076 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~ 41 (329)
+...|+|+|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 253
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.52 E-value=0.013 Score=48.19 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..-.+++.|++|+|||++++.+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999998753
No 254
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.52 E-value=0.0075 Score=52.79 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++.+.|+|.|.+||||||+.+.+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4568899999999999999999865
No 255
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.51 E-value=0.006 Score=51.87 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy2970 21 MELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~ 41 (329)
=-++++|++|+|||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 357899999999999999865
No 256
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.49 E-value=0.0067 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
=-++|+|++|+|||||++.+.+-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35789999999999999999874
No 257
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.47 E-value=0.021 Score=56.48 Aligned_cols=23 Identities=48% Similarity=0.395 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.--|+++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34588889999999999999863
No 258
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.39 E-value=0.0077 Score=49.75 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|+|.|.+||||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 259
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.37 E-value=0.0078 Score=52.67 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
+.--|+|+|++||||||+++.+.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34468999999999999999998753
No 260
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.36 E-value=0.0099 Score=49.46 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
..|++.|.+||||||+.+++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 261
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.36 E-value=0.0077 Score=53.34 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.-.++|+|++|+|||||++.+.+-.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468899999999999999998743
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.33 E-value=0.0085 Score=49.92 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..|+|+|++||||||+.+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999763
No 263
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.32 E-value=0.0099 Score=50.79 Aligned_cols=26 Identities=23% Similarity=0.228 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
+...|+|+|++||||||+++.+.+.-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34578999999999999999998753
No 264
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.32 E-value=0.0081 Score=53.82 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.--++|+|++|||||||++.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3468899999999999999998743
No 265
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.31 E-value=0.0084 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..-|+|+|++||||||+++++...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999753
No 266
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.29 E-value=0.01 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++...|.|+|++|+|||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999999876
No 267
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.28 E-value=0.0094 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 268
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.22 E-value=0.01 Score=51.60 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 269
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.21 E-value=0.0093 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
--|+|+|++|||||||++.+.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 46889999999999999999864
No 270
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.21 E-value=0.0095 Score=50.69 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 271
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.20 E-value=0.093 Score=45.88 Aligned_cols=55 Identities=9% Similarity=-0.030 Sum_probs=34.6
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC-h--hhHHHHHHHhCCcEE
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN-A--LDEKELIDRIMIDFW 193 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~-~--~e~~~l~~~~~~~~~ 193 (329)
++.+.+ ..+.......+..+.+. .+.++.+|.|+.|... . .+..+..++++.+++
T Consensus 96 iv~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~~~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 96 IPSTPD-ALALDALMLTIETLQKL---GNNRFRILLTIIPPYPSKDGDEARQLLTTAGLPLF 153 (209)
T ss_dssp EEECSS-HHHHHHHHHHHHHHHHT---CSSSEEEEECSBCCTTSCHHHHHHHHHHHTTCCBC
T ss_pred EEecCC-chhHHHHHHHHHHHHhc---cCCCEEEEEEecCCccchHHHHHHHHHHHcCCchh
Confidence 777754 44556666655555432 1567889999999875 3 345555556777655
No 272
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.20 E-value=0.012 Score=49.64 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999865
No 273
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.17 E-value=0.013 Score=49.40 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+...|++.|.+||||||+.+.+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999974
No 274
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.16 E-value=0.011 Score=50.18 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.|++.|.+||||||+.+.+..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 3689999999999999999975
No 275
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.16 E-value=0.011 Score=52.09 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|+|+|++|||||||++++...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 276
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.14 E-value=0.012 Score=49.51 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 277
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.10 E-value=0.013 Score=51.03 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|.++|++||||||+.+.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 278
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.09 E-value=0.014 Score=50.14 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=23.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 16 FWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 16 ~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...+.+.|+|.|.+||||||+.+.+..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999999865
No 279
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.05 E-value=0.013 Score=49.18 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|+|.|.+||||||+.+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 280
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.04 E-value=0.012 Score=49.29 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-|++.|.+||||||+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999763
No 281
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.95 E-value=0.016 Score=49.53 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 282
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.94 E-value=0.015 Score=50.34 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.-.|+|+|++|+||||+++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 283
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.92 E-value=0.017 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|+++|++|+||||+.+.+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999865
No 284
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.88 E-value=0.019 Score=47.33 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...-.+++.|++|+|||++++.+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999865
No 285
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.88 E-value=0.013 Score=50.42 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
...|+|.|.+||||||+.+.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998653
No 286
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.88 E-value=0.014 Score=51.15 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
=-++++|++|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3578999999999999999873
No 287
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.86 E-value=0.014 Score=50.05 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
..|+|+|.+||||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 288
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.84 E-value=0.014 Score=49.75 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
++.--++++|+.|+|||||++.+.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344468999999999999999998754
No 289
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.84 E-value=0.017 Score=48.52 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
No 290
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.84 E-value=0.017 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++.+.|+|.|++||||||+.++|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999964
No 291
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.81 E-value=0.014 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.=-++|+|++|+|||||++.+.+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999873
No 292
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.79 E-value=0.019 Score=48.98 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+...|+|+|.+||||||+.+.+...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35578999999999999999999764
No 293
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.78 E-value=0.015 Score=50.69 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 294
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.77 E-value=0.017 Score=49.85 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.-.|+++|++||||||+.+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 295
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.77 E-value=0.014 Score=52.64 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5889999999999999998763
No 296
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.77 E-value=0.018 Score=49.08 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+...|+|.|.+||||||+.+.+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999764
No 297
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.74 E-value=0.066 Score=51.80 Aligned_cols=79 Identities=14% Similarity=0.027 Sum_probs=49.1
Q ss_pred hhhcceeEEEEECCCcccHHH-HHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh---HHHHHH---HhCCcEEEEeccc
Q psy2970 127 SLLFQLIKYMVDAADTDKLEA-SRNELHALIEKPQLIGIPILVLGNKRDLPNALD---EKELID---RIMIDFWITLTLL 199 (329)
Q Consensus 127 ~~~~~~~~lV~Dvt~~~S~~~-~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e---~~~l~~---~~~~~~~etSAk~ 199 (329)
..-.+.+++|... +|..-.+ +..++... + ..++|.+||+||+|+.+..+ .+++.. ..|++.+.+||++
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a-~---~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGC-E---TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHH-H---HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHH-H---hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3445667777554 5643333 22222222 1 24678899999999987644 334443 4578999999999
Q ss_pred hHHHHHHhhhh
Q psy2970 200 IRWCESFLHHF 210 (329)
Q Consensus 200 ~~~~~~~l~~i 210 (329)
....+.+...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 76666665544
No 298
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.73 E-value=0.018 Score=48.65 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+...|++.|.+||||||+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999964
No 299
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.71 E-value=0.23 Score=40.57 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 6 NRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 6 ~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
..+....+... .....|++.|++|+|||++.+.+....
T Consensus 11 ~~~~~~~~~~a-~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 11 NQYRRRLQQLS-ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp HHHHHHHHHHT-TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 33444444332 355689999999999999999997643
No 300
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.71 E-value=0.016 Score=56.24 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
-.++++|++|||||||+|.+.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 368999999999999999999754
No 301
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.69 E-value=0.015 Score=52.02 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|++|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 302
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.68 E-value=0.017 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.|+++|+|||||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 303
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.67 E-value=0.022 Score=51.57 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 3 VLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 3 ~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.|+..+..|++.. .+.-.+++.|+||+|||+++.++..
T Consensus 43 ~f~~~l~~~~~~i--Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 43 TFLGALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CcccEEEEECCCCCCHHHHHHHHHH
Confidence 3566666666653 2344599999999999999888865
No 304
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.67 E-value=0.018 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+...|+|.|.+||||||+.+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999975
No 305
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.64 E-value=0.019 Score=47.55 Aligned_cols=22 Identities=36% Similarity=0.773 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
++|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 306
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.61 E-value=0.019 Score=48.43 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|+++|++||||||+.+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999964
No 307
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.61 E-value=0.021 Score=49.00 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++...|+|.|.+||||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999975
No 308
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.58 E-value=0.023 Score=49.11 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+.--|+++|++|+||||+.+.+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999999865
No 309
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.55 E-value=0.019 Score=52.17 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|++|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 310
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.54 E-value=0.024 Score=48.91 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++...|.++|.+|+||||+.+.+.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999874
No 311
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.54 E-value=0.021 Score=49.03 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999965
No 312
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.51 E-value=0.023 Score=48.91 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.|.++|++||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 313
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.45 E-value=0.046 Score=50.67 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+..-|++.|++||||||+.+++..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457799999999999999999975
No 314
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.45 E-value=0.017 Score=53.79 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
--++++|++|||||||+|.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 468899999999999999998744
No 315
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.44 E-value=0.019 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-+.++|++|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999774
No 316
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.44 E-value=0.019 Score=51.88 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999764
No 317
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.43 E-value=0.018 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+...|+|.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999965
No 318
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.40 E-value=0.013 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=15.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHH-cC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIA-SG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~-~~ 43 (329)
--++|+|++|+||||+++.+. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 458899999999999999998 54
No 319
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.39 E-value=0.019 Score=52.35 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999774
No 320
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.36 E-value=0.019 Score=50.34 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.+.++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999999876
No 321
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.36 E-value=0.022 Score=51.45 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
=.++++|++|+|||||++.+.+-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 322
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.35 E-value=0.028 Score=47.63 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+...|++.|.+|+||||+.+.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999999865
No 323
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.34 E-value=0.027 Score=47.86 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+...|+|.|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999875
No 324
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.32 E-value=0.021 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999774
No 325
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.31 E-value=0.049 Score=50.84 Aligned_cols=26 Identities=27% Similarity=0.106 Sum_probs=22.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.++...|.|+|++|||||||++.+.+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35678899999999999999998864
No 326
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.30 E-value=0.021 Score=52.41 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++.=.++++|++|+|||||++.+.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 3445799999999999999999976
No 327
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.29 E-value=0.021 Score=53.03 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-++++|++|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999774
No 328
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.29 E-value=0.024 Score=47.62 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 329
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.28 E-value=0.022 Score=51.11 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 330
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.27 E-value=0.022 Score=53.22 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy2970 21 MELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~ 41 (329)
--++++|++|||||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 331
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.26 E-value=0.024 Score=51.62 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|++|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999774
No 332
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.25 E-value=0.023 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999885
No 333
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.24 E-value=0.023 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
--++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35889999999999999999864
No 334
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.24 E-value=0.022 Score=51.46 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 335
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.23 E-value=0.039 Score=49.69 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+...|+++|.+||||||+.+.+...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44578999999999999999999753
No 336
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.23 E-value=0.022 Score=52.46 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|++|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999999874
No 337
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.22 E-value=0.025 Score=49.56 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999865
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.20 E-value=0.034 Score=47.66 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++...|+|.|.+||||||+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999999975
No 339
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.20 E-value=0.022 Score=47.89 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
+|+++|.+||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999999865
No 340
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.19 E-value=0.051 Score=45.68 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999875
No 341
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.17 E-value=0.051 Score=51.71 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=22.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.++.+-|.++|++|||||||++.+.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999999864
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.16 E-value=0.021 Score=48.40 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|++.|.+||||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 343
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.16 E-value=0.03 Score=50.05 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++..-|.|+|+.|+|||||++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999999876
No 344
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.15 E-value=0.024 Score=52.30 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|++|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999999774
No 345
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.13 E-value=0.026 Score=51.94 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999885
No 346
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.13 E-value=0.024 Score=51.76 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999774
No 347
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.12 E-value=0.035 Score=47.86 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
..-.+++.|++|+|||++++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999865
No 348
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.11 E-value=0.025 Score=48.64 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
--++++|++|+|||||++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999999999985
No 349
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.09 E-value=0.025 Score=51.89 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 350
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.08 E-value=0.029 Score=49.48 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 351
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.08 E-value=0.009 Score=56.64 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.-.++++|++|||||||+|.+.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 3478999999999999999998643
No 352
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.05 E-value=0.027 Score=47.44 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|++.|.+|+||||+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45699999999999999999874
No 353
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.04 E-value=0.025 Score=52.19 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++|+|++|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999774
No 354
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.04 E-value=0.028 Score=51.54 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|++|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999999874
No 355
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.03 E-value=0.03 Score=47.37 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 356
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.03 E-value=0.021 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.113 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999875
No 357
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.02 E-value=0.032 Score=49.39 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
..+...|++.|.+||||||+.+.|..
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999965
No 358
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.01 E-value=0.027 Score=53.34 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++.=.++|+|++|+|||||++.+.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3445799999999999999999975
No 359
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.01 E-value=0.035 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.159 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|++.|.+||||||+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 360
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.00 E-value=0.027 Score=50.19 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999863
No 361
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.97 E-value=0.027 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 362
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.96 E-value=0.023 Score=47.62 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=16.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999964
No 363
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.95 E-value=0.064 Score=45.83 Aligned_cols=22 Identities=36% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
-.+++.|++|+|||+|++.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999875
No 364
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.92 E-value=0.028 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999774
No 365
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.91 E-value=0.034 Score=52.41 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++..-|.|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 5567899999999999999999876
No 366
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.90 E-value=0.024 Score=53.95 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-+++|+|++|+|||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 367
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.90 E-value=0.03 Score=51.95 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++|+|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999774
No 368
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.85 E-value=0.039 Score=47.96 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.+.|+|.|.+||||||+.+.+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999975
No 369
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.81 E-value=0.04 Score=46.38 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+...|++.|.+|+||||+.+.+.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999876
No 370
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.79 E-value=0.04 Score=49.91 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 371
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.76 E-value=0.03 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999873
No 372
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.72 E-value=0.014 Score=50.20 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-|+|.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 373
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.70 E-value=0.036 Score=45.94 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|++.|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 374
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.69 E-value=0.67 Score=43.59 Aligned_cols=73 Identities=11% Similarity=0.025 Sum_probs=44.4
Q ss_pred ceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE-EEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHH
Q psy2970 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL-VLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESF 206 (329)
Q Consensus 131 ~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi-LVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~ 206 (329)
+-++++.. .+..+++.+...++.+.......+.++. +|.|+.+.. .+.++++++++.+++..-....++.++-
T Consensus 188 d~viIvt~-~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~--~~v~~~a~~~~~~~lg~IP~d~~Vr~a~ 261 (314)
T 3fwy_A 188 DQAVVVTA-NDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVDRFCKETNFRRLAHMPDLDAIRRSR 261 (314)
T ss_dssp SEEEEEEC-SSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHHHHHHHHTCCEEEEECCCHHHHHHH
T ss_pred CeEEEEeC-CcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch--hHHHHHHHHhCCeEEEEecCchHHHHHH
Confidence 33444444 3455666666666555443333445543 577887654 4567889999999887766666555543
No 375
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.62 E-value=0.037 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
.++++|++|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 376
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.61 E-value=0.079 Score=44.88 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 377
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.58 E-value=0.036 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.--++++|++|+|||||+.++..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999987
No 378
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.53 E-value=0.077 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999976
No 379
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.52 E-value=0.02 Score=49.51 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.+.|+|++|+|||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.51 E-value=0.039 Score=46.52 Aligned_cols=21 Identities=43% Similarity=0.526 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 381
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.49 E-value=0.029 Score=47.00 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-.++++|++|+|||||++.+.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999763
No 382
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.48 E-value=0.047 Score=49.26 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~ 41 (329)
.+...|.|+|++|+||||+.+.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999997
No 383
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.44 E-value=0.038 Score=53.24 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.++++|++|+||||+++.+.+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34899999999999999999876
No 384
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.43 E-value=0.039 Score=50.03 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-|+|+|++|||||||.+++..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999964
No 385
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.39 E-value=0.041 Score=47.99 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+.--++++|++|+|||||+.++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3446889999999999999999874
No 386
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.38 E-value=0.037 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
=-++|+|++|+|||||++.+.+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 35889999999999999999764
No 387
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.33 E-value=0.041 Score=49.95 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999863
No 388
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.32 E-value=0.049 Score=50.77 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+..-|.|+|++|+|||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999876
No 389
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.23 E-value=0.065 Score=48.24 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
...-.+++.|++|+|||++++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999999763
No 390
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.20 E-value=0.06 Score=51.86 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++.-.++++|++|+||||+++.+.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999976
No 391
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.20 E-value=0.045 Score=51.20 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6789999999999999999774
No 392
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.15 E-value=0.045 Score=48.79 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.+++.|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34699999999999999999976
No 393
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.15 E-value=0.06 Score=46.78 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+..-|++.|.+|+||||+.+.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999865
No 394
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.14 E-value=0.054 Score=44.99 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|+|.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 395
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.12 E-value=0.045 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-++++|++|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57899999999999999998743
No 396
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.11 E-value=0.044 Score=51.47 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999763
No 397
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.04 E-value=0.11 Score=50.45 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCC-CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 4 LLNRILDWFKSLFW-KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 4 ~~~~~~~~~~~~~~-~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
|...++..+..... .+..+|+++|++|+||||+.+.+.+
T Consensus 7 L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 7 LADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 56667777765443 3456899999999999999998754
No 398
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.03 E-value=0.046 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+.-.++++|++|+|||||++.+.+-
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999999874
No 399
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.02 E-value=0.052 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++|.|++|+||||+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999764
No 400
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.02 E-value=0.053 Score=45.54 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999854
No 401
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.01 E-value=0.11 Score=46.78 Aligned_cols=27 Identities=30% Similarity=0.291 Sum_probs=23.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
....-.+++.|++|+|||++++.+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 445678999999999999999999764
No 402
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.01 E-value=0.049 Score=52.57 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-++++|++|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998743
No 403
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.99 E-value=0.048 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.--++++|++||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999999975
No 404
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.94 E-value=0.051 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5789999999999999999874
No 405
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.93 E-value=0.034 Score=52.51 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
=.++|+|++|+|||||++.+.+-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 37899999999999999998763
No 406
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.91 E-value=0.053 Score=52.48 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57899999999999999998743
No 407
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.89 E-value=0.12 Score=47.05 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+....+++.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999987654
No 408
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.88 E-value=0.058 Score=54.42 Aligned_cols=24 Identities=38% Similarity=0.389 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
...++++|++||||||+++.+.+-
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345999999999999999999764
No 409
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.82 E-value=0.075 Score=52.31 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++.=-++|+|++|+||||+++.+.+-
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 34446899999999999999999863
No 410
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.82 E-value=0.054 Score=52.50 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999998743
No 411
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.81 E-value=0.07 Score=47.72 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+..-|++.|.+||||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999999975
No 412
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.81 E-value=0.064 Score=46.52 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-+.++|.+|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999875
No 413
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.81 E-value=0.051 Score=48.12 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++..-|+|.|..|+||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45578999999999999999998764
No 414
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.78 E-value=0.056 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 57899999999999999998743
No 415
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.76 E-value=0.057 Score=48.50 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy2970 23 LTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~ 42 (329)
|+|+|+|||||+|...++..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999999875
No 416
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.75 E-value=0.057 Score=52.42 Aligned_cols=22 Identities=41% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-++++|++|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5789999999999999999874
No 417
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.74 E-value=0.047 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-.++++|++|+|||||++.+.+-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999874
No 418
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=92.70 E-value=0.17 Score=50.69 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=39.1
Q ss_pred CceE-EEEEcCCCCCHHHHHHHHHc------------------CCCC---CCCCCceeeeEEE-------eeCceEEEEE
Q psy2970 19 EEME-LTLVGLQCSGKTTFVNVIAS------------------GQFS---QDMIPTVGFNMRK-------ITKGNVTIKV 69 (329)
Q Consensus 19 k~lk-IlllG~~gvGKSSLin~l~~------------------~~~~---~~~~pTig~~~~~-------i~~~~~~l~I 69 (329)
+++. |.|+|..++|||+|+|.+++ ..|. +...-|.|+-+.. -++.+..+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 4454 55999999999999996641 2232 1223455654432 1456788999
Q ss_pred EecCCCccc
Q psy2970 70 WDIGGQPRF 78 (329)
Q Consensus 70 ~DtpG~e~~ 78 (329)
.||.|..+.
T Consensus 145 lDTEG~~d~ 153 (457)
T 4ido_A 145 MDTQGTFDS 153 (457)
T ss_dssp EEECCBTCT
T ss_pred EeccCCCCc
Confidence 999996543
No 419
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.70 E-value=0.069 Score=47.32 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.+...|+|+|.+|+||||+.+.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45667899999999999999999875
No 420
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.67 E-value=0.059 Score=52.33 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-+.++|++|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 5789999999999999999874
No 421
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.66 E-value=0.071 Score=47.79 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=21.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
..+.+.|.|.|.+||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999866
No 422
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.50 E-value=0.066 Score=48.77 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-|++.|.+||||||+.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 423
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.41 E-value=0.074 Score=48.35 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+.+.|++.|++|+||||+.+.+..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999864
No 424
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.39 E-value=0.08 Score=48.72 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++.+.|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999973
No 425
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.38 E-value=0.064 Score=48.70 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-.+++.|++|+|||++++.+.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
No 426
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.37 E-value=0.26 Score=40.25 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
....|++.|++|+|||++.+.+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHh
Confidence 4567999999999999999988653
No 427
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.25 E-value=0.054 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~~ 44 (329)
++|+|..|+|||||++.+.+..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 5788999999999999999753
No 428
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.24 E-value=0.048 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-++++|++|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 57899999999999999998743
No 429
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.23 E-value=0.097 Score=48.52 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.+++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999876
No 430
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.18 E-value=0.077 Score=46.20 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
--++++|++|+|||||+.++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999988864
No 431
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.13 E-value=0.072 Score=52.02 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.+.++|++|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 588999999999999999987
No 432
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.11 E-value=0.071 Score=49.25 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.++|.|++|+|||||++.+.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 433
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.08 E-value=0.17 Score=47.19 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 7 RILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 7 ~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+..|....-....-.+++.|++|+|||+|+..+..
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 444555543221246899999999999999999865
No 434
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.07 E-value=0.16 Score=49.25 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.-.++++|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 445789999999999999999985
No 435
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.98 E-value=0.12 Score=47.77 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..-.|++.|++|+|||+|++.+.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 3457999999999999999999763
No 436
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.94 E-value=0.077 Score=48.22 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
--++|+|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999999975
No 437
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.92 E-value=0.18 Score=46.99 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 7 RILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 7 ~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+..|++... .+.-.|++.|+||+|||.|.+++..
T Consensus 92 ~l~~~l~~~~-~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 92 VFLGWATKKF-GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHTTCS-TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhCCC-CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3444554432 3344599999999999999999976
No 438
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.90 E-value=0.09 Score=48.54 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...-+++.|+||+|||+|++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678889999999999999975
No 439
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.84 E-value=0.08 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.--++++|++||||||+++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 44688999999999999999875
No 440
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.79 E-value=0.086 Score=47.53 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 441
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.74 E-value=0.047 Score=52.56 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-++++|++|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998743
No 442
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.66 E-value=0.086 Score=48.71 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.+++.|++|+|||+|++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 34699999999999999999875
No 443
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.66 E-value=0.091 Score=50.31 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.+.=++.++|++|+|||||++.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345589999999999999999998864
No 444
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.64 E-value=0.15 Score=47.43 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.++|.|++|+|||++++.+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999975
No 445
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.53 E-value=0.093 Score=47.97 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.|+|+|++|+||||+.+.+.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999965
No 446
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.52 E-value=0.1 Score=48.68 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 447
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.50 E-value=0.11 Score=48.09 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=25.6
Q ss_pred HHHHHHHhcC-CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 7 RILDWFKSLF-WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 7 ~~~~~~~~~~-~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+..++.... ....-.+++.|++|+|||++++.+..
T Consensus 30 ~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 30 RLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp HHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3444444332 23445799999999999999999875
No 448
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.46 E-value=0.16 Score=50.26 Aligned_cols=25 Identities=24% Similarity=0.334 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...-+++++|+||+|||++++.+..
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999864
No 449
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.34 E-value=0.11 Score=44.26 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|.+.|.+||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 450
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.29 E-value=0.11 Score=43.36 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy2970 23 LTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~ 41 (329)
.+++|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999975
No 451
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.21 E-value=0.095 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+.=.++|+|+.|+|||||++.+.+-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4457999999999999999999774
No 452
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=90.86 E-value=0.12 Score=47.11 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
--++|.|++|+|||||++++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 36889999999999999999764
No 453
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.80 E-value=0.24 Score=46.08 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 454
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.79 E-value=0.12 Score=52.47 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 7899999999999999998774
No 455
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.78 E-value=0.12 Score=47.57 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+++.|++|+|||++++.+.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998753
No 456
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.78 E-value=0.16 Score=46.11 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999998763
No 457
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.77 E-value=0.15 Score=44.61 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..+.|.+.|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999763
No 458
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.70 E-value=0.19 Score=49.77 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
..--|++.|+||+|||+|++++.+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 344699999999999999999975
No 459
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.68 E-value=0.14 Score=51.86 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
=.+.++|+.|+|||||++.+.+-.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998743
No 460
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.61 E-value=0.13 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
=.++++|++|+|||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999874
No 461
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.60 E-value=0.13 Score=50.83 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.+.=++.++|++|+|||||++.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 345579999999999999999998854
No 462
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.58 E-value=0.13 Score=47.02 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-++|.|++|+|||||++++...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999999999753
No 463
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.56 E-value=0.1 Score=46.98 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++..-|+|.|..||||||+++.+..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998865
No 464
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.55 E-value=0.084 Score=47.16 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
-.+++.|++|+|||+|++.+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3489999999999999999975
No 465
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.47 E-value=0.24 Score=46.52 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.1
Q ss_pred ceEEEE--EcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTL--VGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIll--lG~~gvGKSSLin~l~~ 42 (329)
.-.++| .|++|+|||+|++.+..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHH
Confidence 345666 79999999999999875
No 466
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.47 E-value=0.2 Score=49.66 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+..-.|++.|+||+|||+|++++.+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHH
Confidence 3456899999999999999999976
No 467
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.41 E-value=0.17 Score=44.78 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..-|++-|..||||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999999753
No 468
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.35 E-value=0.22 Score=45.94 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-.|++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 356999999999999999999653
No 469
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.33 E-value=0.17 Score=47.23 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~ 41 (329)
+.-.|+++|++||||||++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999985
No 470
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.22 E-value=0.15 Score=47.36 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-.|++.|++|+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999753
No 471
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.19 E-value=0.14 Score=47.93 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
-.|++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999999999863
No 472
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.17 E-value=0.097 Score=48.63 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=18.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++..-|.|.|++||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999999865
No 473
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.15 E-value=0.19 Score=48.92 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+..-|+++|.+||||||+.+++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445688999999999999999975
No 474
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.06 E-value=2.7 Score=37.93 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=34.1
Q ss_pred cceeEEEEECCCcccHHHHHHHHHHHHhC--CcCCCCcEE-EEEEcCCCCCh---hhHHHHHHHhCC
Q psy2970 130 FQLIKYMVDAADTDKLEASRNELHALIEK--PQLIGIPIL-VLGNKRDLPNA---LDEKELIDRIMI 190 (329)
Q Consensus 130 ~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~--~~~~~iPIi-LVgNK~Dl~~~---~e~~~l~~~~~~ 190 (329)
.+.+++++..+ ..+...+...+..+.+. ....+.+++ +|.|+.|.... ...+++.+.++.
T Consensus 177 aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~~~~~~~~~~~~~ 242 (298)
T 2oze_A 177 SDYVMIPLQAE-EESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQHKE 242 (298)
T ss_dssp CSEEEEEECGG-GCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEecCc-HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHHHHHHHHHHHhcc
Confidence 55566777754 34455544443333221 112456754 89999998764 345667777764
No 475
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.06 E-value=0.15 Score=44.08 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+.|++.|.+|+||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
No 476
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.98 E-value=0.27 Score=43.83 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
....|++.|++|+|||++++.+...-
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 35689999999999999999997643
No 477
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.97 E-value=0.12 Score=52.48 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999774
No 478
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=89.90 E-value=0.18 Score=47.81 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=22.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
..+.-.+++.|+||+|||++++.+..
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 44667899999999999999999875
No 479
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.88 E-value=0.15 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
=-+.|+|++|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4578999999999999999965
No 480
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.86 E-value=0.15 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
=-+.++|+.|+|||||++.+.+-.
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 357899999999999999998743
No 481
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.80 E-value=0.17 Score=48.43 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=18.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~ 41 (329)
..+ .+|+|+.|+|||||++.+.
T Consensus 23 ~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEE-EEEECCTTSSHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHH
Confidence 344 5689999999999999986
No 482
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.65 E-value=0.24 Score=45.17 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~ 41 (329)
+.+++|++.|++||||||++-++.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHH
Confidence 457999999999999999977764
No 483
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.64 E-value=0.17 Score=52.10 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-+.++|+.|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999998743
No 484
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.63 E-value=0.14 Score=52.17 Aligned_cols=23 Identities=43% Similarity=0.522 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
=.+.++|++|+|||||++.+.+-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 37899999999999999998763
No 485
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.62 E-value=0.16 Score=48.33 Aligned_cols=25 Identities=24% Similarity=0.221 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+.--+.|+|++|+|||||++++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4456889999999999999999875
No 486
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.46 E-value=0.31 Score=43.93 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHH
Confidence 4999999999999999998653
No 487
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.43 E-value=0.27 Score=48.74 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+..-.|++.|+||+|||+|++++.+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999999999999976
No 488
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.38 E-value=0.2 Score=51.08 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+...|+|+|.+|+|||||.+.+.+.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHh
Confidence 35678999999999999999999763
No 489
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=89.36 E-value=0.42 Score=43.17 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+++.|++|+|||++++.+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999998753
No 490
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.30 E-value=0.19 Score=47.55 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
....+++.|++|+|||++++.+..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 491
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.21 E-value=0.82 Score=41.85 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=16.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
+++-|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999999653
No 492
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.16 E-value=0.21 Score=44.85 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
...|+++|++|+|||+|...+...-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3569999999999999999998653
No 493
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.14 E-value=0.22 Score=43.22 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
--+++.|+||+|||+|..++..
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3578899999999999998753
No 494
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=89.08 E-value=0.2 Score=47.21 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
..-.|++.|+||+|||++.+.+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 495
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.00 E-value=0.13 Score=52.31 Aligned_cols=21 Identities=33% Similarity=0.703 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.+.++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 789999999999999998766
No 496
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.00 E-value=0.44 Score=42.93 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+++.|++|+|||++++.+...
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3999999999999999998753
No 497
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=88.97 E-value=0.43 Score=47.73 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 5 LNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 5 ~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+..+..++........--|.|+|.+|+|||||..++.+
T Consensus 137 ~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 137 VDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 34455555443222335688999999999999999985
No 498
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.96 E-value=0.21 Score=51.41 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.+.|+|+.|+|||||++.+.+
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhC
No 499
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.90 E-value=0.23 Score=50.22 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
.+.|+|+.|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998854
No 500
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=88.90 E-value=0.39 Score=45.64 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCC-----------CceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 3 VLLNRILDWFKSLFWK-----------EEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 3 ~~~~~~~~~~~~~~~~-----------k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.++..+..|+...+.. ...-|++.|++|+||||+...+....
T Consensus 116 ~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 116 QLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 3555666666654432 24579999999999999999998753
Done!