RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2970
(329 letters)
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 181 bits (462), Expect = 8e-57
Identities = 111/182 (60%), Positives = 125/182 (68%), Gaps = 41/182 (22%)
Query: 6 NRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNV 65
+ KEEMELTLVGLQ SGKTTFVNVIASGQF++DMIPTVGFNMRKITKGNV
Sbjct: 8 HHHSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNV 67
Query: 66 TIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMW 125
TIK+WDIGGQPRFRSMWERYCRGV+AIV+
Sbjct: 68 TIKLWDIGGQPRFRSMWERYCRGVSAIVY------------------------------- 96
Query: 126 LSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELI 185
MVDAAD +K+EAS+NELH L++KPQL GIP+LVLGNKRDLP ALDEKELI
Sbjct: 97 ----------MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELI 146
Query: 186 DR 187
++
Sbjct: 147 EK 148
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 173 bits (441), Expect = 1e-53
Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 42/187 (22%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L + L ++ + ++GL +GKT+ + + G +PTVG N+ +
Sbjct: 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETL 61
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
N++ +VWD+GGQ R W Y +A++
Sbjct: 62 QYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVI--------------------------- 94
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
Y+VD+ D D++ +++EL+AL+++ +L +L+ NK+DLP+A
Sbjct: 95 --------------YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS 140
Query: 181 EKELIDR 187
E E+ ++
Sbjct: 141 EAEIAEQ 147
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 166 bits (424), Expect = 4e-51
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 47/185 (25%)
Query: 8 ILDWFKSL-----FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK 62
I WF+ + W + +L +GL +GKTT ++++ + + + + PT ++
Sbjct: 6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAI 64
Query: 63 GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSG 122
GN+ +D+GG + R +W+ Y VN IV
Sbjct: 65 GNIKFTTFDLGGHIQARRLWKDYFPEVNGIV----------------------------- 95
Query: 123 PMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK 182
++VDAAD ++ + +R EL AL +L +P ++LGNK D PNA+ E
Sbjct: 96 ------------FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEA 143
Query: 183 ELIDR 187
EL
Sbjct: 144 ELRSA 148
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 165 bits (421), Expect = 5e-51
Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 42/173 (24%)
Query: 15 LFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGG 74
EM + ++GL +GKTT + + G+ IPT+GFN+ +T N+ +VWD+GG
Sbjct: 2 SHMTREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGG 60
Query: 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIK 134
R W Y +A+++
Sbjct: 61 LTSIRPYWRCYYSNTDAVIY---------------------------------------- 80
Query: 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDR 187
+VD+ D D++ S++EL A++E+ +L ++V NK+D+ A+ E+ +
Sbjct: 81 -VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANS 132
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 166 bits (423), Expect = 6e-51
Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 57/229 (24%)
Query: 1 MFVLLNRILDWFKSL-----FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF 55
M + + I F S+ +K+ +L +GL +GKTT ++++ + Q +PT+
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHP 59
Query: 56 NMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEP 115
++T +T +D+GG + R +W+ Y +N IV+
Sbjct: 60 TSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVF--------------------- 98
Query: 116 VDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175
+VD AD ++L S+ EL +L+ + +PIL+LGNK D
Sbjct: 99 --------------------LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR 138
Query: 176 PNALDEKELIDRIMIDFWITLTLLIRWCESFLHHFGSHPNWAVKWHTLP 224
P A+ E+ L + + T + L + P
Sbjct: 139 PEAISEERLREMFGLYGQTTGKGSVS-----LKELNARP-----LEVFM 177
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 154 bits (392), Expect = 2e-46
Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 44/187 (23%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M + + + D +E+ + ++GL +GKTT + + G+ PT+GFN+ +
Sbjct: 1 MGNIFSSMFDKLWG--SNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVETL 57
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
+ N+ + VWD+GGQ R W Y A++
Sbjct: 58 SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVI--------------------------- 90
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
++VD+ D D++ + ELH ++++ +L +LV NK+D P AL
Sbjct: 91 --------------FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS 136
Query: 181 EKELIDR 187
E+
Sbjct: 137 ASEVSKE 143
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 154 bits (392), Expect = 2e-46
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 42/177 (23%)
Query: 11 WFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVW 70
F +F K++M + +VGL +GKTT + + G+ IPT+GFN+ + N+ VW
Sbjct: 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNICFTVW 78
Query: 71 DIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLF 130
D+GGQ + R +W Y + ++
Sbjct: 79 DVGGQDKIRPLWRHYFQNTQGLI------------------------------------- 101
Query: 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDR 187
++VD+ D ++++ S +EL ++++ +L +LV NK+D+PNA+ EL D+
Sbjct: 102 ----FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDK 154
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 153 bits (390), Expect = 3e-46
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 44/182 (24%)
Query: 8 ILDWFKSLFW--KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNV 65
+L + L +E+ + L+GL +GKTT + +AS S + PT GFN++ +
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGF 60
Query: 66 TIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMW 125
+ VWDIGGQ + R W Y + +++
Sbjct: 61 KLNVWDIGGQRKIRPYWRSYFENTDILIY------------------------------- 89
Query: 126 LSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELI 185
++D+AD + E + EL L+E+ +L +P+L+ NK+DL A E+
Sbjct: 90 ----------VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIA 139
Query: 186 DR 187
+
Sbjct: 140 EG 141
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 150 bits (381), Expect = 8e-45
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 44/175 (25%)
Query: 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQF-SQDMIPTVGFNMRKITKGNVTIKVWDIGG 74
+E+ + +GL SGKTT +N + SQ+++PT+GF++ K +++ V+D+ G
Sbjct: 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSG 76
Query: 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIK 134
Q R+R++WE Y + AI+
Sbjct: 77 QGRYRNLWEHYYKEGQAII----------------------------------------- 95
Query: 135 YMVDAADTDKLEASRNELHALIEKPQLIG--IPILVLGNKRDLPNALDEKELIDR 187
+++D++D ++ ++ EL L+ P + IPIL NK DL +A+ ++
Sbjct: 96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQL 150
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 148 bits (376), Expect = 4e-44
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 43/181 (23%)
Query: 8 ILDWFKSLFW-KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVT 66
+L K + + E+ L ++GL +GKTT + + PT+GFN++ +
Sbjct: 5 LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFNIKTLEHRGFK 63
Query: 67 IKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWL 126
+ +WD+GGQ RS W Y + ++W
Sbjct: 64 LNIWDVGGQKSLRSYWRNYFESTDGLIW-------------------------------- 91
Query: 127 SLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID 186
+VD+AD +++ + EL +L+ + +L G +L+ NK+DLP AL + +
Sbjct: 92 ---------VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQE 142
Query: 187 R 187
Sbjct: 143 A 143
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 143 bits (364), Expect = 3e-42
Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 46/187 (24%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M +L RI LF +E ++ +VGL +GKTT + + + PT+G N+ +I
Sbjct: 1 MGILFTRI----WRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEI 55
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
N +WDIGGQ RS W Y ++
Sbjct: 56 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI--------------------------- 88
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
+VD+ D +++ +R EL+ ++ L +L+ NK+D+ +
Sbjct: 89 --------------VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 134
Query: 181 EKELIDR 187
E+
Sbjct: 135 VAEISQF 141
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 141 bits (359), Expect = 7e-42
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 42/167 (25%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80
M + +VGL +GKTT + + G+ IPT+GFN+ + N++ VWD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA 140
+W Y + ++ ++VD+
Sbjct: 60 LWRHYFQNTQGLI-----------------------------------------FVVDSN 78
Query: 141 DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDR 187
D +++ +R EL ++ + +L +LV NK+DLPNA++ E+ D+
Sbjct: 79 DRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK 125
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 135 bits (342), Expect = 4e-39
Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 42/172 (24%)
Query: 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQ 75
+E ++ +VGL +GKTT + + + PT+G N+ +I N +WDIGGQ
Sbjct: 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEIVINNTRFLMWDIGGQ 75
Query: 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKY 135
RS W Y ++
Sbjct: 76 ESLRSSWNTYYTNTEFVI-----------------------------------------V 94
Query: 136 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDR 187
+VD+ D +++ +R EL+ ++ L +L+ NK+D+ + E+
Sbjct: 95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQF 146
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 114 bits (288), Expect = 1e-29
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 42/178 (23%)
Query: 10 DWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKV 69
+ LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ + N++ V
Sbjct: 155 PQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTV 213
Query: 70 WDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLL 129
WD+GGQ + R +W Y + +++
Sbjct: 214 WDVGGQDKIRPLWRHYFQNTQGLIF----------------------------------- 238
Query: 130 FQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDR 187
+VD+ D +++ +R EL ++ + +L +LV NK+DLPNA++ E+ D+
Sbjct: 239 ------VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK 290
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 116 bits (293), Expect = 2e-29
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 42/172 (24%)
Query: 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQ 75
+EM + ++GL +GKTT + + GQ IPTVGFN+ +T NV VWD+GGQ
Sbjct: 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVETVTYKNVKFNVWDVGGQ 376
Query: 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKY 135
+ R +W Y G +++
Sbjct: 377 DKIRPLWRHYYTGTQGLIF----------------------------------------- 395
Query: 136 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDR 187
+VD AD D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ ++
Sbjct: 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEK 447
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 107 bits (268), Expect = 3e-28
Identities = 29/200 (14%), Positives = 59/200 (29%), Gaps = 61/200 (30%)
Query: 6 NRILDWFKSLF----------WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF 55
+I W + + + + + G Q SGKT+ + ++ + + +
Sbjct: 24 RKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQE- 81
Query: 56 NMRKITKGNVTIKVWDIGGQPRFRSMWERY----CRGVNAIVWTGGLYIVSKHIKRSAIL 111
+ + + D G + R Y + V ++
Sbjct: 82 PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI------------------ 123
Query: 112 YYEPVDLGVSGPMWLSLLFQLIKYMVDAA-DTDKLEASRNELHALIEKPQLI---GIPIL 167
+MVD+ D KL + L ++ + GI IL
Sbjct: 124 -----------------------FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 160
Query: 168 VLGNKRDLPNALDEKELIDR 187
+ NK +L A ++ D
Sbjct: 161 IACNKSELFTARPPSKIKDA 180
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 105 bits (265), Expect = 2e-27
Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 51/176 (28%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
+ + + G Q SGKT+ + ++ + + + + + + D G + R
Sbjct: 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-PLSAADYDGSGVTLVDFPGHVKLR 69
Query: 80 SMWERY----CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKY 135
Y + V ++ +
Sbjct: 70 YKLSDYLKTRAKFVKGLI-----------------------------------------F 88
Query: 136 MVDAA-DTDKLEASRNELHALIEKPQLI---GIPILVLGNKRDLPNALDEKELIDR 187
MVD+ D KL + L ++ + GI IL+ NK +L A ++ D
Sbjct: 89 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDA 144
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 101 bits (253), Expect = 9e-26
Identities = 26/177 (14%), Positives = 58/177 (32%), Gaps = 49/177 (27%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGG 74
+ + VGL SGKT + +GQ+ ++ + N ++ + D+ G
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSITDSSAIYKVNNNRGNSLTLIDLPG 63
Query: 75 QPRFR-SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLI 133
R + +R+ A+V
Sbjct: 64 HESLRFQLLDRFKSSARAVV---------------------------------------- 83
Query: 134 KYMVDAADTDK-LEASRNELHALIEKPQLI--GIPILVLGNKRDLPNALDEKELIDR 187
++VD+A + ++ L+ ++ + +L+ NK+D+ A K + +
Sbjct: 84 -FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQ 139
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 96.4 bits (240), Expect = 4e-24
Identities = 37/194 (19%), Positives = 64/194 (32%), Gaps = 64/194 (32%)
Query: 16 FWKEEMELTLV--GLQCSGKTTFVNVIASGQFSQDM----------IPTVGFNMRKITKG 63
F E+ +V G SGKTT + I S T+ F+ + G
Sbjct: 8 FANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG 67
Query: 64 -----NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDL 118
++ + GQ + + + RGV+ IV
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIV------------------------- 102
Query: 119 GVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE-----KPQLIGIPILVLGNKR 173
++ D+A ++L A+ + + E L +PI++ NKR
Sbjct: 103 ----------------FVADSAP-NRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKR 145
Query: 174 DLPNALDEKELIDR 187
DLP+AL + +
Sbjct: 146 DLPDALPVEMVRAV 159
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 77.7 bits (191), Expect = 3e-17
Identities = 32/188 (17%), Positives = 55/188 (29%), Gaps = 52/188 (27%)
Query: 11 WFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQD---MIPTVGFNMRKIT-KGNVT 66
F + + L+GL+ SGK++ V+ + + T I+ V
Sbjct: 11 RENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVN 70
Query: 67 IKVWDIGGQPRFRSMW---ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGP 123
++WD GQ F E RG A++
Sbjct: 71 FQIWDFPGQMDFFDPTFDYEMIFRGTGALI------------------------------ 100
Query: 124 MWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLI--GIPILVLGNKRDLPNALDE 181
Y++DA D + LH + K + + V +K D + +
Sbjct: 101 -----------YVIDA--QDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHK 147
Query: 182 KELIDRIM 189
E I
Sbjct: 148 IETQRDIH 155
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 65.8 bits (160), Expect = 2e-12
Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 53/176 (30%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQD---MIPTVGFNMRKIT-KGNVTIKVWDIGGQPRF-- 78
L+G SGK++ ++I S + D + T+ + GN+T+ +WD GGQ F
Sbjct: 8 LMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67
Query: 79 ---RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKY 135
+ + V ++
Sbjct: 68 NYFTKQKDHIFQMVQVLIH----------------------------------------- 86
Query: 136 MVDAADTDKLEASRNELHALIEKPQLI--GIPILVLGNKRDLPNALDEKELIDRIM 189
+ D T+ L+ +++ + I VL +K DL +EL +M
Sbjct: 87 VFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMM 141
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 61.2 bits (149), Expect = 3e-11
Identities = 36/159 (22%), Positives = 59/159 (37%), Gaps = 47/159 (29%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L LVG +GKTTFV +G+F + + T+G + IK VWD GQ +F
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77
Query: 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVD 138
+ + Y + ++ V+ + Y+ V P W + +V
Sbjct: 78 GGLRDGYYIQAQCAII---MFDVTSRVT------YKNV------PNWH-------RDLVR 115
Query: 139 AADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177
+ IPI++ GNK D+ +
Sbjct: 116 VCE---------------------NIPIVLCGNKVDIKD 133
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 59.5 bits (145), Expect = 6e-11
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKIT-KGNVTIK--VWDIGGQPR 77
+ ++G SGKT+ A F + T+G F +R+IT GN+ + +WDIGGQ
Sbjct: 9 IVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI 68
Query: 78 FRSMWERYCRGVNAIV 93
M ++Y G ++
Sbjct: 69 GGKMLDKYIYGAQGVL 84
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 58.9 bits (143), Expect = 2e-10
Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 47/160 (29%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG---FNMRKITKGNVTIK--VWDIGGQPR 77
+ L+G GKTT++N + G+F ++ TVG + + IK VWD GQ +
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73
Query: 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMV 137
+ + Y G + + + V+ I + + W+ +
Sbjct: 74 KAVLKDVYYIGASGAIL---FFDVTSRIT------CQNL------ARWVK---EFQAV-- 113
Query: 138 DAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177
PI+V NK D+ N
Sbjct: 114 ---------VGNE-------------APIVVCANKIDIKN 131
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain,
RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp
protein; HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 56.9 bits (138), Expect = 8e-10
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L +G Q GKT+ + F T+G F + + + T++ +WD G RF
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERF 78
Query: 79 RSMWERYCRGVNAIV 93
RS+ Y R V
Sbjct: 79 RSLIPSYIRDSTVAV 93
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 56.5 bits (137), Expect = 1e-09
Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 44/151 (29%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSMWERYCR 87
GKT+ +N + +FS T+G F +++ + + +WD GQ RF+S+ + R
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR 79
Query: 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKLE 146
G + V +V + V A +T L+
Sbjct: 80 GADCCV------LV---------------------------------FDVTAPNTFKTLD 100
Query: 147 ASRNELHALIEKPQLIGIPILVLGNKRDLPN 177
+ R+E P +VLGNK DL N
Sbjct: 101 SWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 55.8 bits (135), Expect = 1e-09
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDM--IPTVG--FNMRKIT---KGNVTIK--VW 70
M+L +VG SGKTT + + + S TVG I K + VW
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 71 DIGGQPRFRSMWERYCRGVNAIV 93
D G+ F S + +
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYL 84
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 55.7 bits (135), Expect = 2e-09
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L +G Q GKT+ + F T+G F + + + T++ +WD GQ RF
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 76
Query: 79 RSMWERYCRGVNAIV 93
RS+ Y R V
Sbjct: 77 RSLIPSYIRDSTVAV 91
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 55.2 bits (134), Expect = 2e-09
Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 44/151 (29%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSMWERYCR 87
GK++ +N + +F + T+G F + + + +WD GQ RFRS+ + R
Sbjct: 19 GKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR 78
Query: 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKLE 146
G + + + + VD + + L
Sbjct: 79 GSDCCL------LT---------------------------------FSVDDSQSFQNLS 99
Query: 147 ASRNELHALIEKPQLIGIPILVLGNKRDLPN 177
+ E + + P ++LGNK D+
Sbjct: 100 NWKKEFIYYADVKEPESFPFVILGNKIDISE 130
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 55.7 bits (135), Expect = 2e-09
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GK++ V F ++ PT+G F + + GN K +WD GQ RF
Sbjct: 26 VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF 85
Query: 79 RSMWERYCRGVNAIV 93
S+ Y RG A V
Sbjct: 86 HSLAPMYYRGSAAAV 100
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 54.8 bits (133), Expect = 3e-09
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G C GKT+ V +F+ I T+G F +K+ G + +WD GQ RF
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 68
Query: 79 RSMWERYCRGVNAIV 93
++ Y R N +
Sbjct: 69 HALGPIYYRDSNGAI 83
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution,
protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A*
1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A*
1huq_A* 2hei_A* 1z07_A*
Length = 170
Score = 54.4 bits (132), Expect = 3e-09
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L L+G GK++ V GQF + T+G F + + + T+K +WD GQ R+
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
Query: 79 RSMWERYCRGVNAIV 93
S+ Y RG A +
Sbjct: 69 HSLAPMYYRGAQAAI 83
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 170
Score = 54.8 bits (132), Expect = 3e-09
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L L+G GK++ V S F+++ PT+G F +++T T+K +WD GQ RF
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF 65
Query: 79 RSMWERYCRGVNAIV 93
S+ Y R A +
Sbjct: 66 ASLAPXYYRNAQAAL 80
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 54.5 bits (132), Expect = 3e-09
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L L+G +GK++ V QF + T+G F + + + T+K +WD GQ R+
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74
Query: 79 RSMWERYCRGVNAIV 93
S+ Y RG A +
Sbjct: 75 HSLAPMYYRGAAAAI 89
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 54.5 bits (132), Expect = 4e-09
Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 45/153 (29%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKIT-KGNVTIK--VWDIGGQPRFRSMWERYC 86
GKT+ ++ + ++SQ T+G F +++T G+ VWD GQ RF+S+ +
Sbjct: 20 GKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFY 79
Query: 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKL 145
RG + V +V Y V A + + +
Sbjct: 80 RGADCCV------LV---------------------------------YDVTNASSFENI 100
Query: 146 EASRNELHALIEKPQLIGIPILVLGNKRDLPNA 178
++ R+E P ++LGNK D +
Sbjct: 101 KSWRDEFLVHANVNSPETFPFVILGNKIDAEES 133
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 54.5 bits (132), Expect = 4e-09
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GKT ++ +FS D T+G F+ R + G +K +WD G R+
Sbjct: 28 VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY 87
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG +
Sbjct: 88 RAITSAYYRGAVGAL 102
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 54.6 bits (132), Expect = 4e-09
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GK+ ++ +F+ + T+G F R I TIK +WD GQ R+
Sbjct: 8 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 67
Query: 79 RSMWERYCRGVNAIV 93
R + Y RG +
Sbjct: 68 RRITSAYYRGAVGAL 82
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation,
vesicular transport, acetylation, golgi apparatus,
lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces
cerevisiae}
Length = 223
Score = 54.7 bits (132), Expect = 6e-09
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GK+ ++ +F+ D T+G F R + IK +WD GQ R+
Sbjct: 16 IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERY 75
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG +
Sbjct: 76 RAITSAYYRGAVGAL 90
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 53.8 bits (130), Expect = 7e-09
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GK+ ++ +F+ + T+G F R I TIK +WD G R+
Sbjct: 32 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY 91
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG +
Sbjct: 92 RAITSAYYRGAVGAL 106
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 53.3 bits (129), Expect = 7e-09
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GK++ + F ++ PT+G F + + N K +WD G RF
Sbjct: 9 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 68
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG A +
Sbjct: 69 RALAPMYYRGSAAAI 83
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 53.8 bits (130), Expect = 8e-09
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L G GK++F+ + +F +++ T+G F M+ + +WD GQ RF
Sbjct: 31 IVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF 90
Query: 79 RSMWERYCRGVNAIV 93
RS+ + Y R + ++
Sbjct: 91 RSIAKSYFRKADGVL 105
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 53.4 bits (129), Expect = 1e-08
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L ++G GKT+F+ A F+ + TVG F ++ + + +K +WD GQ R+
Sbjct: 26 LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY 85
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG +
Sbjct: 86 RTITTAYYRGAMGFI 100
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 52.2 bits (126), Expect = 2e-08
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GK+ + +F+ I T+G F ++ + +K +WD GQ RF
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG I+
Sbjct: 66 RTITTAYYRGAMGII 80
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 52.2 bits (126), Expect = 2e-08
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
++G GK+ ++ +F D T+G F R I IK +WD GQ RF
Sbjct: 18 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 77
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG +
Sbjct: 78 RAVTRSYYRGAAGAL 92
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 52.3 bits (126), Expect = 3e-08
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GK+ + +F+ I T+G F ++ + +K +WD GQ RF
Sbjct: 23 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF 82
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG I+
Sbjct: 83 RTITTAYYRGAMGII 97
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 51.9 bits (125), Expect = 3e-08
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ ++G GK++ + F ++ T+G F ++ I+ K +WD GQ RF
Sbjct: 18 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 77
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG ++
Sbjct: 78 RTLTPSYYRGAQGVI 92
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 51.9 bits (125), Expect = 3e-08
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L LVG GKT V +G FS+ T+G F M+ + +K +WD GQ RF
Sbjct: 32 LVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF 91
Query: 79 RSMWERYCRGVNAIV 93
R++ + Y R N +
Sbjct: 92 RTITQSYYRSANGAI 106
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 51.3 bits (124), Expect = 3e-08
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ +VG GK++ + G F++D T+G F R+I + ++ +WD GQ F
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 67
Query: 79 RSMWERYCRGVNAIV 93
++ + Y RG A V
Sbjct: 68 DAITKAYYRGAQACV 82
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 51.9 bits (125), Expect = 3e-08
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GKT V G F T+G F ++ + +K +WD GQ RF
Sbjct: 29 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 88
Query: 79 RSMWERYCRGVNAIV 93
RS+ + Y R NA++
Sbjct: 89 RSITQSYYRSANALI 103
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 51.8 bits (125), Expect = 3e-08
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L L+G GKT + + F+ I T+G F +R I IK +WD GQ RF
Sbjct: 11 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 70
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG I+
Sbjct: 71 RTITTAYYRGAMGIM 85
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 51.9 bits (125), Expect = 4e-08
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ ++G GKT+F+ A F+ + TVG F ++ I + + IK +WD G R+
Sbjct: 11 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY 70
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG +
Sbjct: 71 RTITTAYYRGAMGFI 85
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 51.4 bits (124), Expect = 4e-08
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L ++G GK++ + A FS I T+G F +R + +K +WD GQ RF
Sbjct: 12 LLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERF 71
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG + ++
Sbjct: 72 RTITSTYYRGTHGVI 86
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 51.5 bits (124), Expect = 4e-08
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L L+G GK+ + A +++ I T+G F +R I TIK +WD GQ RF
Sbjct: 36 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 95
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG + I+
Sbjct: 96 RTITSSYYRGAHGII 110
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 51.4 bits (124), Expect = 5e-08
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRS 80
++G +GK+ ++ +F D T+G F + I G +K +WD GQ RFRS
Sbjct: 15 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 74
Query: 81 MWERYCRGVNAIV 93
+ Y RG +
Sbjct: 75 VTRSYYRGAAGAL 87
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 51.5 bits (124), Expect = 5e-08
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSMWERYCR 87
GK+ + A +++ I T+G F +R I TIK +WD GQ RFR++ Y R
Sbjct: 28 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR 87
Query: 88 GVNAIV 93
G + I+
Sbjct: 88 GAHGII 93
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 51.5 bits (124), Expect = 5e-08
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
++G +GK+ ++ +F QD T+G F R + G T+K +WD GQ RF
Sbjct: 28 FLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF 87
Query: 79 RSMWERYCRGVNAIV 93
RS+ Y RG +
Sbjct: 88 RSVTRSYYRGAAGAL 102
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 51.1 bits (123), Expect = 6e-08
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L L+G GKT+F+ A F+ + TVG F ++ + + + IK +WD GQ R+
Sbjct: 25 LLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERY 84
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG +
Sbjct: 85 RTITTAYYRGAMGFL 99
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction,
structural genomics, structural genomics consortium,
SGC, protein transport; HET: GDP; 1.50A {Homo sapiens}
SCOP: c.37.1.8 PDB: 1z0a_A*
Length = 191
Score = 50.7 bits (122), Expect = 7e-08
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSMWERYCR 87
GK+ + +F T+G F R + IK +WD GQ FRS+ Y R
Sbjct: 33 GKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR 92
Query: 88 GVNAIV 93
G +
Sbjct: 93 GAAGAL 98
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 50.8 bits (122), Expect = 8e-08
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSMWERYCR 87
GK+ + + ++ D I T+G F ++ + T+K +WD GQ RFR++ Y R
Sbjct: 20 GKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR 79
Query: 88 GVNAIV 93
G + I+
Sbjct: 80 GSHGII 85
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 50.7 bits (122), Expect = 9e-08
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ ++G + GKT+ + F + TVG F ++ + I+ +WD GQ RF
Sbjct: 29 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 88
Query: 79 RSMWERYCRGVNAIV 93
S+ Y R I+
Sbjct: 89 NSITSAYYRSAKGII 103
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 50.1 bits (119), Expect = 3e-07
Identities = 29/173 (16%), Positives = 56/173 (32%), Gaps = 52/173 (30%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQD---MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81
L+G++ GK++ V+ D + T ++ + + V ++ GQ +
Sbjct: 4 LMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEP 62
Query: 82 W---ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVD 138
ER + V A+V Y++D
Sbjct: 63 SYDSERLFKSVGALV-----------------------------------------YVID 81
Query: 139 AADTDKLEASRNELHALIEKPQLI--GIPILVLGNKRDLPNALDEKELIDRIM 189
+ D+ + L +IE + I I VL +K D + + + IM
Sbjct: 82 S--QDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIM 132
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 48.4 bits (116), Expect = 5e-07
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ ++G GKT +G+F T+G F R + IK +WD GQ RF
Sbjct: 23 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 82
Query: 79 R-SMWERYCRGVNAIV 93
R SM + Y R V+A+V
Sbjct: 83 RKSMVQHYYRNVHAVV 98
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 50.0 bits (119), Expect = 5e-07
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 12/86 (13%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT------------KGNVTI 67
E+++ L+G +GKT+ + + F T G N+
Sbjct: 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLF 100
Query: 68 KVWDIGGQPRFRSMWERYCRGVNAIV 93
WD GGQ + + + + +
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYM 126
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 47.4 bits (113), Expect = 1e-06
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGGQPRFR 79
+ +VG GKT ++V A F ++ +PTV N +I + + +WD G P +
Sbjct: 10 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD 69
Query: 80 SMWERYCRGVNAIV 93
++ +A++
Sbjct: 70 NVRPLSYPDSDAVL 83
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 46.8 bits (112), Expect = 1e-06
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQD-MIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFR 79
LVG GKT + G F I TVG F + + V +K +WD GQ RFR
Sbjct: 15 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR 74
Query: 80 SMWERYCRGVNAIV 93
S+ Y R +A++
Sbjct: 75 SVTHAYYRDAHALL 88
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 46.1 bits (110), Expect = 3e-06
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 23 LTLVGLQCSGKTTFVN--VIASGQFSQDMIPTVG--FNMRKITKGNVTIKV----WDIGG 74
+ +VG GK+ ++ +F +D T G + +T + T+ V D G
Sbjct: 23 VAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAG 82
Query: 75 QPRFRSMWERYCRGVNAIV 93
++ +Y GV +
Sbjct: 83 SDLYKEQISQYWNGVYYAI 101
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 45.4 bits (108), Expect = 7e-06
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKIT----------KGNVTIK--VWDIGGQPR 77
GKTTF+ +F+ I TVG F +++ + +WD GQ R
Sbjct: 37 GKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER 96
Query: 78 FRSMWERYCRGVNAIV 93
FRS+ + R +
Sbjct: 97 FRSLTTAFFRDAMGFL 112
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold,
GTPase, GTP binding, protein binding, signali protein;
HET: GNP; 2.30A {Homo sapiens}
Length = 204
Score = 45.1 bits (107), Expect = 7e-06
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGG 74
+ ++ +VG GKT + + F + IPTV N + V + +WD G
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87
Query: 75 QPRFRSM 81
Q + +
Sbjct: 88 QEDYDRL 94
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 44.9 bits (106), Expect = 1e-05
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGGQPRFR 79
L LVG GKT + V+A + + +PTV N + + V + +WD G P +
Sbjct: 30 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD 89
Query: 80 SMWERYCRGVNAIV 93
++ +A++
Sbjct: 90 NVRPLCYSDSDAVL 103
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C
...
Length = 186
Score = 43.6 bits (103), Expect = 2e-05
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGG 74
+ ++ +VG GKT + + F + IPTV N + V + +WD G
Sbjct: 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 62
Query: 75 QPRFRSMWERYCRGVNAIV 93
Q + + + +
Sbjct: 63 QEDYDRLRPLSYPQTDVSL 81
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling
protein, GDPNP, SLP2A, exophil GTP-binding,
lipoprotein, membrane, methylation; HET: GNP; 1.80A
{Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 43.8 bits (104), Expect = 2e-05
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 14/76 (18%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKIT----------KGNVTIK--VWDIGGQPR 77
GKT+ + G+F+ I TVG F +++ I +WD G R
Sbjct: 23 GKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82
Query: 78 FRSMWERYCRGVNAIV 93
FRS+ + R +
Sbjct: 83 FRSLTTAFFRDAMGFL 98
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 44.3 bits (104), Expect = 2e-05
Identities = 13/122 (10%), Positives = 25/122 (20%), Gaps = 45/122 (36%)
Query: 70 WDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLL 129
G + ++ C V+ +
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFI------------------------------------ 130
Query: 130 FQLIKYMVDAADTDKLEASRNELHALI---EKPQLIGIPILVLG-NKRDLPNALDEKELI 185
Y+ +A + E H + G P+LVL + + L
Sbjct: 131 -----YVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLA 185
Query: 186 DR 187
Sbjct: 186 HE 187
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 42.9 bits (102), Expect = 3e-05
Identities = 32/163 (19%), Positives = 55/163 (33%), Gaps = 53/163 (32%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
+ + G GK++ V G F + IPTV R++ + T+++ D G +F
Sbjct: 6 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP 65
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
+M +A + +V Y +
Sbjct: 66 AMQRLSISKGHAFI------LV---------------------------------YSI-- 84
Query: 140 ADTDKLEASRNELHALIE-----KPQLIGIPILVLGNKRDLPN 177
T + S EL + E K + IPI+++GNK D
Sbjct: 85 --TSR--QSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 43.0 bits (102), Expect = 3e-05
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
+ + G GK++ V G F IPT+ R++ + T+++ D G +F
Sbjct: 11 VVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP 70
Query: 80 SMWERYCRGVNAIV 93
+M +A +
Sbjct: 71 AMQRLSISKGHAFI 84
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 42.8 bits (101), Expect = 5e-05
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGGQPRFR 79
L +VG GKT + V + QF + +PTV N ++ V + +WD GQ +
Sbjct: 28 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYD 87
Query: 80 S 80
Sbjct: 88 R 88
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 42.3 bits (100), Expect = 7e-05
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGG 74
K+ +++ +VG GKT + + G+ +PTV N + K + +WD G
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80
Query: 75 QPRFRSMWERYCRGVNAIV 93
Q + + + ++
Sbjct: 81 QEEYDRLRPLSYADSDVVL 99
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 41.8 bits (99), Expect = 9e-05
Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 52/162 (32%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
+ +VG GK+ +F +D PT + RK + V I + D GQ +
Sbjct: 17 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 76
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
++ + Y R + V + +
Sbjct: 77 AIRDNYFRSGEGFL------CV---------------------------------FSI-- 95
Query: 140 ADTDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN 177
T+ S E+ + +P L++GNK DL +
Sbjct: 96 --TEM--ESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 41.8 bits (99), Expect = 9e-05
Identities = 34/162 (20%), Positives = 53/162 (32%), Gaps = 52/162 (32%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
L +VG GK+ F D PT+ + K T+ + + V D GQ F
Sbjct: 21 LVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS 80
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
+M E+Y R + + IV Y V
Sbjct: 81 AMREQYMRTGDGFL------IV---------------------------------YSV-- 99
Query: 140 ADTDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN 177
TDK AS + + + P++++ NK DL +
Sbjct: 100 --TDK--ASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 41.4 bits (98), Expect = 1e-04
Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 52/162 (32%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
+ +VG GK+ +F +D PT + RK + V I + D GQ +
Sbjct: 21 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 80
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
++ + Y R + V + +
Sbjct: 81 AIRDNYFRSGEGFL------CV---------------------------------FSI-- 99
Query: 140 ADTDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN 177
T+ S E+ + +P L++GNK DL +
Sbjct: 100 --TEM--ESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 41.2 bits (97), Expect = 1e-04
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGGQPRFR 79
VG GKT + S F D +PTV N + V + +WD GQ +
Sbjct: 11 CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN 70
Query: 80 SM 81
+
Sbjct: 71 RL 72
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 41.3 bits (97), Expect = 1e-04
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFR 79
L +VG GKT + V + +F + +PTV N ++ V + +WD GQ +
Sbjct: 28 LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD 87
Query: 80 SM 81
+
Sbjct: 88 RL 89
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 41.0 bits (97), Expect = 2e-04
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
+ ++G + GK++ GQF PT+ K+ N +++ D GQ +
Sbjct: 9 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS 68
Query: 80 SMWERYCRGVNAIV 93
+ Y +N +
Sbjct: 69 IFPQTYSIDINGYI 82
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 40.5 bits (96), Expect = 2e-04
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGGQPRFR 79
L +VG GK+ + F + PT+ + RK + + D GQ +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 65
Query: 80 SMWERYCRGVNAIV 93
+M ++Y R +
Sbjct: 66 AMRDQYMRTGEGFL 79
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 40.6 bits (96), Expect = 2e-04
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ LVG GK+T Q R+I + V+DI Q
Sbjct: 5 VMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDA 64
Query: 79 RS-MWERYCRGVNAIV 93
+ + + +A +
Sbjct: 65 GGWLQDHCLQTGDAFL 80
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 2e-04
Identities = 50/302 (16%), Positives = 97/302 (32%), Gaps = 92/302 (30%)
Query: 4 LLNRILDWFKSLFWK------------EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIP 51
+LN L F++ + + +E + TLV + K I + +
Sbjct: 83 VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 52 TVGFNMRKITKGNVTIKVWDI-GGQ----PRF---RSMWERYCRGVNAIVWTGG--LYIV 101
+ F R + +GN + I GGQ F R +++ Y V ++ L +
Sbjct: 143 SALF--RAVGEGNAQLVA--IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 102 SKHIKRSAILYYEPVDLG-------------------VSGPMWLSLLFQLIKYMVDAADT 142
+ + ++ + +++ +S P L + QL Y+V A
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP--LIGVIQLAHYVVTA--- 253
Query: 143 DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL-----DEKELIDRIMIDFWITLT 197
L + EL + L G G+ + L A+ D E F++++
Sbjct: 254 KLLGFTPGEL-----RSYLKG----ATGHSQGLVTAVAIAETDSWE-------SFFVSVR 297
Query: 198 LLIRWCESFLHHFG--SHPNWAVKWHTLPKLLFLSLVDSYVSSGASDYTEEAGCTISILM 255
I L G + P ++ + + + E + M
Sbjct: 298 KAITV----LFFIGVRCY-------EAYP--------NTSLPPSILEDSLENNEGVPSPM 338
Query: 256 LS 257
LS
Sbjct: 339 LS 340
Score = 37.7 bits (87), Expect = 0.005
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 134 KYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIMIDFW 193
+V A+D + +N + + IP+ + DL I ++D
Sbjct: 430 HLLVPASDLINKDLVKNNV--SFNAKDI-QIPVYDTFDGSDLR---VLSGSISERIVD-C 482
Query: 194 ITLTLLIRWCESFLHHFGSH 213
I L ++W E+ +H
Sbjct: 483 II-RLPVKW-ETTTQFKATH 500
Score = 30.0 bits (67), Expect = 1.3
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 49 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERY 85
T GF++ I N GG+ + + + E Y
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGE-KGKRIRENY 1688
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 40.6 bits (96), Expect = 2e-04
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT-KGN-VTIKVWDIGGQPR 77
E+++ +VG SGK+ V+ +G + Q+ P G ++I G + + D GG P
Sbjct: 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPE 79
Query: 78 FRSMWERYCRGVNAIV 93
++ V+A+V
Sbjct: 80 L-----QFAAWVDAVV 90
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 40.7 bits (96), Expect = 2e-04
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGGQPRFR 79
L +VG GK+ + F + PT+ + RK + + D GQ +
Sbjct: 7 LVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 66
Query: 80 SMWERYCRGVNAIV 93
+M ++Y R +
Sbjct: 67 AMRDQYMRTGEGFL 80
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 40.7 bits (96), Expect = 2e-04
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGGQPRFR 79
L +VG GK+ + F + PT+ + RK + + D GQ +
Sbjct: 24 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 83
Query: 80 SMWERYCRGVNAIV 93
+M ++Y R +
Sbjct: 84 AMRDQYMRTGEGFL 97
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 40.7 bits (96), Expect = 2e-04
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 11 WFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTI 67
+F+ + ++ ++G +C GKT+ + G+FS+ PTV KI +
Sbjct: 15 YFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHL 74
Query: 68 KVWDIGGQPRFRSMWERYCRGVNAIV 93
+ D GQ + + + GV+ V
Sbjct: 75 HLVDTAGQDEYSILPYSFIIGVHGYV 100
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 40.1 bits (95), Expect = 2e-04
Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 52/162 (32%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG-FNMRKITKGNVTIK--VWDIGGQPRFR 79
+ ++G GK+ +G F + PT+ F ++I + + D G +F
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA 65
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
SM + Y + + +V Y +
Sbjct: 66 SMRDLYIKNGQGFI------LV---------------------------------YSL-- 84
Query: 140 ADTDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN 177
++ S ++ + ++ + +P++++GNK DL +
Sbjct: 85 --VNQ--QSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 2e-04
Identities = 51/354 (14%), Positives = 102/354 (28%), Gaps = 85/354 (24%)
Query: 4 LLNRILD--WFKSLFWKEEMEL---TLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR 58
LL +L + L L+ + T F++ + S D
Sbjct: 247 LL--VLLNVQNAKAW--NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTPD 301
Query: 59 KITKG----NVTIKVWDI-----GGQPR-----------FRSMWERYCRGVNAIVWTGGL 98
+ K + + D+ PR + W+ + + VN
Sbjct: 302 E-VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW-KHVN-------C 352
Query: 99 YIVSKHIKRS-AIL-------YYE-----PVDLGVSGPMWLSLLFQLIKYMVDAADTDKL 145
++ I+ S +L ++ P + + LSL++ + +KL
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKL 411
Query: 146 EASRNELHALIEK---PQLIGIPILVLGNKRDLPNALD-EKELIDRIMI----DFWITLT 197
L+EK I IP + L K L N + ++D I D
Sbjct: 412 HKYS-----LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD---D 463
Query: 198 LLIRWCES-FLHHFGSH---PNWAVKWHTLPKLLF-LSLVDSYVSSGASDYTEEAGCTIS 252
L+ + + F H G H + + ++ + ++ + +
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 253 ILMLSWYSVTVRQHWSYIIMYIVHKPLAYRLECNMSRVSTTTHSSCTYFSPFQN 306
+ L +Y YI + P RL + + S + +
Sbjct: 524 LQQLKFYK-------PYI---CDNDPKYERLVNAILDFLPKIEENL-ICSKYTD 566
Score = 35.2 bits (80), Expect = 0.034
Identities = 57/380 (15%), Positives = 109/380 (28%), Gaps = 129/380 (33%)
Query: 6 NRILDWFKSLFWKEEME------------LTLVGLQCSGKTTFVNVIASGQFSQDMI-PT 52
+ D KS+ KEE++ L L S + V +F ++++
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ-----KFVEEVLRIN 90
Query: 53 VGFNMRKITKGNVTIKVWDIGGQPRFRSM-WERYCRGVNAIVWTGGLYIVSKHIKR---- 107
F M I + R SM Y + + + ++ R
Sbjct: 91 YKFLMSPIKT------------EQRQPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPY 137
Query: 108 ----SAILYYEPVD-LGVSGPM---------------------------WLSL------- 128
A+L P + + G + WL+L
Sbjct: 138 LKLRQALLELRPAKNVLIDG-VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 129 ----LFQLIKYMVDAADTDKLEASRN---ELHALIEKPQLIGIPILVLGNKRDLPNAL-- 179
+ Q + Y +D T + + S N +H++ + + L + N L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-------LRRLLKSKPYENCLLV 249
Query: 180 -DE---KELID------RIMI---DFWITLTLLIRWCESFLHHFGSHPNWAVKWHTLPKL 226
+ + +I++ +T L + H H + + T ++
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA---ATTTHISLDHHSMTL---TPDEV 303
Query: 227 LFLSLVDSYVSSGASDYTEEAGCTISILMLSWYSVTVRQH---WSYIIMYIVHKPLAYRL 283
SL+ Y+ D E T + LS + ++R W
Sbjct: 304 --KSLLLKYLDCRPQDLPREV-LTTNPRRLSIIAESIRDGLATWDNWKHV---------- 350
Query: 284 ECNMSRVSTTTHSSCTYFSP 303
N +++T SS P
Sbjct: 351 --NCDKLTTIIESSLNVLEP 368
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding,
methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A
{Homo sapiens}
Length = 214
Score = 40.5 bits (95), Expect = 3e-04
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGN-VTIKVWDIGGQPRFR 79
+ LVG GKT+ + V A G F + PTV + + KG V + +WD GQ +
Sbjct: 37 VVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD 96
Query: 80 SM 81
+
Sbjct: 97 RL 98
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 40.5 bits (95), Expect = 3e-04
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
LVG GKT+ V + + + IPT N + + V +++ D GQ F
Sbjct: 23 CVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFD 82
Query: 80 SM 81
+
Sbjct: 83 KL 84
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 39.8 bits (94), Expect = 3e-04
Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 52/162 (32%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
+ +VG GK+ +F +D PT + RK + V I + D GQ +
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 66
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
++ + Y R + V + +
Sbjct: 67 AIRDNYFRSGEGFL------CV---------------------------------FSI-- 85
Query: 140 ADTDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN 177
T+ S E+ + +P L++GNK DL +
Sbjct: 86 --TEM--ESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 39.8 bits (94), Expect = 3e-04
Identities = 29/162 (17%), Positives = 53/162 (32%), Gaps = 52/162 (32%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG-FNMRKITKGNVTIK--VWDIGGQPRFR 79
L +VG GK+ F D PT+ + + + + + D GQ F
Sbjct: 12 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG 71
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
+M E+Y R + + +V + +
Sbjct: 72 AMREQYMRAGHGFL------LV---------------------------------FAI-- 90
Query: 140 ADTDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN 177
D+ S NE+ L + + P++++GNK DL +
Sbjct: 91 --NDR--QSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 39.9 bits (94), Expect = 3e-04
Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 55/165 (33%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQP 76
E+ L ++G + +GK+ + +F + P + + V ++V D
Sbjct: 21 EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLD 80
Query: 77 RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYM 136
R+ ERY +A + +V Y
Sbjct: 81 TPRNC-ERYLNWAHAFL------VV---------------------------------YS 100
Query: 137 VDAADTDKLEASRNELHALIE------KPQLIGIPILVLGNKRDL 175
V + S + + +E K IP L+LGNK D+
Sbjct: 101 V----DSR--QSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 39.8 bits (94), Expect = 3e-04
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFRSMWERYCRG 88
GK+ G F + PT+ + RK + + +++ D G +F +M + Y +
Sbjct: 15 GKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKN 74
Query: 89 VNAIV 93
Sbjct: 75 GQGFA 79
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus}
SCOP: c.37.1.8
Length = 205
Score = 40.1 bits (94), Expect = 3e-04
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGGQPRFR 79
+ +VG GKT ++V A F ++ +PTV N +I + + +WD G P +
Sbjct: 31 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD 90
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 39.5 bits (93), Expect = 5e-04
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ LVG GK+T Q P R+I + V+DI Q
Sbjct: 26 VMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA 85
Query: 79 RS-MWERYCRGVNAIV 93
+ + + +A +
Sbjct: 86 GGWLRDHCLQTGDAFL 101
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 38.8 bits (91), Expect = 8e-04
Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQP 76
E+ L ++G SGK++ ++ +G + T +K + + + + G P
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQYKKEMLVDGQTHLVLIREEAGAP 65
Query: 77 RFRSMWERYCRGVNAIV 93
++ +A++
Sbjct: 66 DA-----KFSGWADAVI 77
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP:
c.37.1.8
Length = 194
Score = 38.2 bits (89), Expect = 0.001
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTV--GFNMRKITKGN-VTIKVWDIGGQPRFR 79
+VG GKT + A+ F ++ +PTV + + G + ++D GQ +
Sbjct: 21 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD 80
Query: 80 SMWERYCRGVNAIV 93
+ + +
Sbjct: 81 RLRPLSYPMTDVFL 94
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 37.5 bits (88), Expect = 0.002
Identities = 30/160 (18%), Positives = 47/160 (29%), Gaps = 53/160 (33%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
+ L+G GK+ I G G + + ++ V+DI Q R
Sbjct: 5 VLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 63
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
+ +A V IV Y V
Sbjct: 64 WLPGHCMAMGDAYV------IV---------------------------------YSV-- 82
Query: 140 ADTDKLEASRNELHALIEKPQLI----GIPILVLGNKRDL 175
TDK S + L + + +PI+++GNK DL
Sbjct: 83 --TDK--GSFEKASELRVQLRRARQTDDVPIILVGNKSDL 118
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 37.2 bits (87), Expect = 0.003
Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 53/165 (32%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQP 76
E++L + G GK+ V + +F + PT+ R + V++++ D GQ
Sbjct: 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 87
Query: 77 RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYM 136
E + R V +V Y
Sbjct: 88 DTI-QREGHMRWGEGFV------LV---------------------------------YD 107
Query: 137 VDAADTDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN 177
+ TD+ S E+ L I + ++++GNK DL +
Sbjct: 108 I----TDR--GSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 37.0 bits (85), Expect = 0.006
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 6/71 (8%)
Query: 123 PMWLSLL--FQLIKYMVDAADTDKLEASRNELHALI---EKPQLIGIPILVLG-NKRDLP 176
P + Y+ +A + E H + G P+LVL +
Sbjct: 202 PQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 261
Query: 177 NALDEKELIDR 187
+ L
Sbjct: 262 KRMPCFYLAHE 272
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 36.7 bits (85), Expect = 0.007
Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 38/175 (21%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIP--TVGFNMRKITKGNVTIKVWDIGGQ 75
E + + G GK+T + + + + P T G N+ + G ++ D G
Sbjct: 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPG- 223
Query: 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKY 135
+ +R N + LI Y
Sbjct: 224 -----LLDRPISERN----EIEKQAILALRYLGN----------------------LIIY 252
Query: 136 MVDAADT--DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
+ D ++ LE + + + +P LV+ NK D+ + + K L +
Sbjct: 253 IFDPSEHCGFPLEEQIHLFEEV--HGEFKDLPFLVVINKIDVADEENIKRLEKFV 305
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 36.0 bits (83), Expect = 0.008
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 41/112 (36%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK------------ 68
L+G GK++ V + F ++ T+G F + ++ IK
Sbjct: 10 TVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNIN 69
Query: 69 ---------------------------VWDIGGQPRFRSMWERYCRGVNAIV 93
+WD GQ R+ S+ Y RG +
Sbjct: 70 SINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET:
GDP; 1.78A {Arabidopsis thaliana}
Length = 212
Score = 36.2 bits (84), Expect = 0.008
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGG 74
+ ++ VG GKT + S +F D IPTV N + V + +WD G
Sbjct: 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAG 66
Query: 75 QPRFRSMWERYCRGVNAIV 93
Q + + RG + V
Sbjct: 67 QEDYSRLRPLSYRGADIFV 85
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 35.9 bits (83), Expect = 0.011
Identities = 26/185 (14%), Positives = 55/185 (29%), Gaps = 48/185 (25%)
Query: 17 WKEEMELTLVGLQCSGKTTFVNV-------IASGQFSQDMIPTVGFNMRKITKGNVTIKV 69
+ + L G GK++F+N+ + S F+ T + ++
Sbjct: 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFT-----TKNLYVGHFDHKLNKYQI 80
Query: 70 WDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLL 129
D G + +R N I T + HI
Sbjct: 81 IDTPG------LLDRAFENRNTIEMTTITAL--AHING---------------------- 110
Query: 130 FQLIKYMVDAADTD--KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDR 187
+I +++D ++ ++ N +++ K I++ NK D N
Sbjct: 111 --VILFIIDISEQCGLTIKEQINLFYSI--KSVFSNKSIVIGFNKIDKCNMDSLSIDNKL 166
Query: 188 IMIDF 192
++
Sbjct: 167 LIKQI 171
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 35.9 bits (84), Expect = 0.016
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIMI 190
L+ +DA E++ ++ P++++ NK DL L I
Sbjct: 305 DLVLLTIDA--ATGWTTGDQEIYEQVK-----HRPLILVMNKIDLVEKQLITSLEYPENI 357
Query: 191 DFWITL 196
+
Sbjct: 358 TQIVHT 363
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 35.6 bits (83), Expect = 0.018
Identities = 12/64 (18%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIMI 190
++ +++DA + L+ ++ I+ LV+ NK D+ ++E+E+ +++
Sbjct: 325 DIVLFVLDA--SSPLDEEDRKILERIK-----NKRYLVVINKVDVVEKINEEEIKNKLGT 377
Query: 191 DFWI 194
D +
Sbjct: 378 DRHM 381
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 34.1 bits (79), Expect = 0.032
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID 186
+ +MVD T E+ +PI V+ NK D+ ++
Sbjct: 85 DRVLFMVDG--TTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVN 138
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 34.7 bits (79), Expect = 0.032
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 47 QDMI----PTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98
QD++ PT G + NV K+ D+GGQ R W V +I++
Sbjct: 179 QDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSS 234
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD
and GEM like GTP protein 1, structural genomics; HET:
GDP; 2.50A {Homo sapiens}
Length = 175
Score = 33.7 bits (78), Expect = 0.044
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPT-VGFNMRKITKGNVTIK--VWDIGGQPRFR 79
+ L+G GKT+ ++ A Q R +T V D +
Sbjct: 7 VVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD 66
Query: 80 S--MWERYCRGVNAIV 93
E +G +A V
Sbjct: 67 KSWSQESCLQGGSAYV 82
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 33.9 bits (77), Expect = 0.069
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 49 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93
+PT G +V ++ D+GGQ R W V +I+
Sbjct: 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIM 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 33.7 bits (78), Expect = 0.071
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 132 LIKYMVDAADT--DKLEASRNELHA----LIEKPQLIGIPILVLGNKRDLPNALDEKELI 185
++ Y++DAAD LE R E+ A L+ +P ++ L NK DL K L
Sbjct: 238 VLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPS-----LVAL-NKVDLLEEEAVKALA 291
Query: 186 DRI 188
D +
Sbjct: 292 DAL 294
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 33.7 bits (78), Expect = 0.080
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKE 183
LI Y++D L+ E+ L L + NK D D
Sbjct: 314 DLILYLLDLGTER-LDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI 363
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 33.6 bits (76), Expect = 0.086
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 49 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93
+ T G K V ++D+GGQ R W + V AI+
Sbjct: 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAII 245
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 33.1 bits (75), Expect = 0.097
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 47 QDMI----PTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93
QD++ T G T ++ K++D+GGQ R W GV AI+
Sbjct: 171 QDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAII 221
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 32.9 bits (75), Expect = 0.10
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 20 EMELT-LVGLQCSGKTTFVNVIA 41
++ L L GL GK+TF +A
Sbjct: 3 DIMLIILTGLPGVGKSTFSKNLA 25
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 32.9 bits (76), Expect = 0.13
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 19/67 (28%)
Query: 132 LIKYMVDAADTDK------LEASRNELHA----LIEKPQLIGIPILVLGNKRDLPNALDE 181
+I +++D + + EL L E+PQ I+V NK D+P +
Sbjct: 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQ-----IIVA-NKMDMP---EA 289
Query: 182 KELIDRI 188
E ++
Sbjct: 290 AENLEAF 296
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.28
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 23/51 (45%)
Query: 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE 181
Q +K KL+AS +L+A P L + A E
Sbjct: 20 QALK---------KLQASL-KLYA----DD--SAPALAI-------KATME 47
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 31.1 bits (70), Expect = 0.47
Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 23/84 (27%)
Query: 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGI-PILVLGNKRDLPNALDEKELIDRIMI 190
L+ +VD D S P+ PIL++GNK DL +
Sbjct: 74 LVVNIVDIFDF---NGSFIP-----GLPRFAADNPILLVGNKADL--------------L 111
Query: 191 DFWITLTLLIRWCESFLHHFGSHP 214
+ L+RW G P
Sbjct: 112 PRSVKYPKLLRWMRRMAEELGLCP 135
Score = 28.8 bits (64), Expect = 2.8
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWD-IGGQ 75
++E ++ +VG GK+TF+N I + + T T + I +
Sbjct: 159 YREGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTS-YFPGTTLDMIEIPLESGATLY 217
Query: 76 PRFRSMWER 84
+
Sbjct: 218 DTPGIINHH 226
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 30.5 bits (69), Expect = 0.51
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 5/31 (16%)
Query: 25 LVGLQCSGKTTFVNVIASGQ-----FSQDMI 50
+G SGK+T+ + ++D
Sbjct: 7 TIGCPGSGKSTWAREFIAKNPGFYNINRDDY 37
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 30.7 bits (69), Expect = 0.54
Identities = 15/112 (13%), Positives = 31/112 (27%), Gaps = 2/112 (1%)
Query: 66 TIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMW 125
T + D QP + + Y + A ++ + + G +
Sbjct: 103 TEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLL 162
Query: 126 LSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177
+ L+ V + + L + PI+V+ K D
Sbjct: 163 VDGF--LLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGV 212
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A
{Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB:
1j8y_F
Length = 297
Score = 30.2 bits (69), Expect = 0.78
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 25 LVGLQCSGKTTFV 37
LVG+Q +GKTT
Sbjct: 103 LVGVQGTGKTTTA 115
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition
particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A
{Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Length = 433
Score = 30.2 bits (69), Expect = 0.98
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 25 LVGLQCSGKTTFV 37
LVG+Q SGKTT
Sbjct: 102 LVGVQGSGKTTTA 114
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
ultrahigh resolution, protein transport; 1.10A {Thermus
aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A
1ffh_A 2ng1_A*
Length = 295
Score = 29.8 bits (68), Expect = 1.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 25 LVGLQCSGKTTFV 37
LVGLQ SGKTT
Sbjct: 103 LVGLQGSGKTTTA 115
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding,
signal recognition particle, GTP-binding, RNA-binding;
2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Length = 432
Score = 30.2 bits (69), Expect = 1.1
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 25 LVGLQCSGKTTFV 37
LVG+Q SGKTT
Sbjct: 104 LVGIQGSGKTTTA 116
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA
binding protein, hydrolase, gtpas; HET: GCP; 3.94A
{Escherichia coli} PDB: 2j28_9
Length = 433
Score = 29.8 bits (68), Expect = 1.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 25 LVGLQCSGKTTFV 37
+ GLQ +GKTT V
Sbjct: 105 MAGLQGAGKTTSV 117
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal
recognition particle, SRP-GTPase, protein targeting,
cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus
furiosus}
Length = 443
Score = 29.8 bits (68), Expect = 1.2
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 25 LVGLQCSGKTTFV 37
+VG+Q SGKTT V
Sbjct: 105 MVGIQGSGKTTTV 117
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 29.9 bits (68), Expect = 1.2
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 25 LVGLQCSGKTTFV 37
VGLQ SGKTT
Sbjct: 106 FVGLQGSGKTTTC 118
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 28.3 bits (63), Expect = 1.2
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 29/98 (29%)
Query: 130 FQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIM 189
F KY D KL S+ E+ L+ K ++E + ++M
Sbjct: 17 FH--KYSSQEGDKFKL--SKGEMKELLHK------------ELPSFVGEKVDEEGLKKLM 60
Query: 190 ----------IDF---WITLTLLIRWCESFLHHFGSHP 214
+DF + L L+ F P
Sbjct: 61 GSLDENSDQQVDFQEYAVFLALITVMSNDFFQGSPDRP 98
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M
domain, RNA-binding, signal sequence-binding,
helix-turn-helix, protein targeting; 3.20A {Thermus
aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB:
2iy3_A
Length = 425
Score = 29.8 bits (68), Expect = 1.3
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 25 LVGLQCSGKTTFV 37
LVGLQ SGKTT
Sbjct: 103 LVGLQGSGKTTTA 115
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 27.7 bits (62), Expect = 1.4
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 19/60 (31%)
Query: 130 FQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIM 189
F+ KY D ++L S+ EL LI+ + P+ L +D +
Sbjct: 13 FE--KYAAKEGDPNQL--SKEELKQLIQA---------------EFPSLLKGPRTLDDLF 53
>1izm_A Hypothetical protein HI0817; structural genomics, YGFB, structure 2
function project, S2F, unknown function; 1.95A
{Haemophilus influenzae} SCOP: a.199.1.1
Length = 184
Score = 28.9 bits (64), Expect = 1.9
Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 20/95 (21%)
Query: 119 GVSGPMWLSLLFQLI--KYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176
G+ WL LL+Q + + ++ + + + L
Sbjct: 37 GLKDQSWLPLLYQFSNDNHAYPTGLVQPVTELYEQISQTLSDVEGFTFELG-------LT 89
Query: 177 NALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211
+++ + + L W FL G
Sbjct: 90 ---EDENVFTQADS--------LSDWANQFLLGIG 113
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 28.9 bits (64), Expect = 2.0
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 5/31 (16%)
Query: 25 LVGLQCSGKTTFVNVIASGQ-----FSQDMI 50
+G SGK+T+ + ++D
Sbjct: 7 TIGCPGSGKSTWAREFIAKNPGFYNINRDDY 37
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 28.4 bits (63), Expect = 3.3
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVI------ASGQFSQDMIPTVGFNMRKITKGNVTIKVWD 71
++ + LVG +GK+ N I SG ++ + T R + + V D
Sbjct: 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSI--TKKCEKRSSSWKETELVVVD 84
>1gk9_A Penicillin G acylase alpha subunit; antibiotic resistance, amidase,
NTN-hydrolase,; 1.3A {Escherichia coli} SCOP: d.153.1.2
PDB: 1e3a_A 1gkf_A 1pnk_A 1ai5_A* 1ai6_A* 1ai7_A 1ajn_A*
1ai4_A* 1ajp_A* 1ajq_A* 1fxv_A* 1gm8_A* 1h2g_A 1fxh_A
1pnl_A* 1pnm_A* 1k7d_A* 1k5q_A* 1k5s_A* 1jx9_A* ...
Length = 260
Score = 28.4 bits (63), Expect = 3.3
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMW 125
P S+ + Y G+NA +I + +L + G + W
Sbjct: 87 PEDMSILQGYADGMNA-------WIDKVNTNPETLLPKQFNTFGFTPKRW 129
>1cp9_A Penicillin amidohydrolase; antibiotic resistance, NTN-hydrolase
fold, N-terminal pyroglutamate, penicillin binding
protein; 2.50A {Providencia rettgeri} SCOP: d.153.1.2
Length = 205
Score = 27.8 bits (62), Expect = 3.5
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
+ + + Y G+NA +I + K ++ + +D
Sbjct: 85 SQEQDILRGYADGMNA-------WIKQINTKPDDLMPKQFIDYDF 122
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 28.2 bits (63), Expect = 3.6
Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 4/56 (7%)
Query: 254 LMLSWYSVTVRQHWSYIIMYIVHKPLAYRLECNMSRVSTTTHSSCTYFSPFQNHKV 309
+ L W ++ + I+ Y V + + T + T +
Sbjct: 25 VQLVWKTLPPFEANGKILDYEVT----LTRWKSHLQNYTVNATKLTVNLTNDRYLA 76
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 28.5 bits (64), Expect = 3.7
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 66 TIKVWDIG-GQPRFRSMWERYCRGVNAIVWTG---GLYIVS 102
T+KVW +G P F ++ RGVN + + Y+++
Sbjct: 164 TVKVWSLGQSTPNF-TLTTGQERGVNYVDYYPLPDKPYMIT 203
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 28.1 bits (63), Expect = 4.5
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
+ D+A T E ++ + + IP +V+ NK D+ ++ E + +
Sbjct: 116 CGILVTDSAPTPY------EDD-VVNLFKEMEIPFVVVVNKIDVLG--EKAEELKGL 163
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 27.7 bits (62), Expect = 4.9
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 27 GLQCSGKTTFVNVIASGQFSQDMIPTVGFNM 57
GL SGKTT N ++ + I F+M
Sbjct: 29 GLSRSGKTTLANQLSQ-TLREQGISVCVFHM 58
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 27.5 bits (62), Expect = 6.3
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 163 GIPILVLGNKRDLPNALDEKELIDRIM 189
I ++ K DL D ++ I
Sbjct: 117 DIQPIICITKMDLIEDQDTEDTIQAYA 143
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 27.3 bits (61), Expect = 6.5
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 160 QLIGIPILVLGNKRDLPNALDEKELIDRIMID 191
+L+ P+ V K + A + D + +D
Sbjct: 158 ELLQAPLEVCYTKEEFQQAKELFSEYDHVFVD 189
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 27.6 bits (61), Expect = 6.6
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 132 LIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDL-PNALDEKELIDRI 188
L+ +VD D S LH + +L++GNK DL P ++ ++ +
Sbjct: 72 LVVKIVDIFDF---NGSWLPGLHRFVG-----NNKVLLVGNKADLIPKSVKHDKVKHWM 122
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 27.5 bits (62), Expect = 6.7
Identities = 3/40 (7%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 66 TIKVWDI--GGQPRFRSMWERYCRGVNAIVWT-GGLYIVS 102
+ + + + + W + V + W+ + + +
Sbjct: 514 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 553
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 26.3 bits (58), Expect = 7.1
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 17/56 (30%)
Query: 134 KYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIM 189
+ D L S NE L+ + LP+ L + +D M
Sbjct: 30 TFARQEGRKDSL--SVNEFKELVTQ---------------QLPHLLKDVGSLDEKM 68
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 27.3 bits (61), Expect = 8.0
Identities = 6/40 (15%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 66 TIKVWDI-GGQPRFRSMWERYCRGVNAIVW--TGGLYIVS 102
+I +WD+ +++ + + +G+ ++ W ++S
Sbjct: 241 SILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS 280
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 27.1 bits (59), Expect = 9.5
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 78 FRSMWERYCRG 88
+ MWE Y G
Sbjct: 702 YLQMWEHYAAG 712
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 27.0 bits (59), Expect = 9.5
Identities = 10/59 (16%), Positives = 22/59 (37%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWE 83
+VG GK+T +N + P ++K + + + GG ++ +
Sbjct: 13 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVD 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.446
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,212,793
Number of extensions: 305502
Number of successful extensions: 1358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1269
Number of HSP's successfully gapped: 213
Length of query: 329
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 235
Effective length of database: 4,077,219
Effective search space: 958146465
Effective search space used: 958146465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.6 bits)