RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2970
(329 letters)
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 68.7 bits (167), Expect = 1e-14
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQP 76
M++ L+G GK+ + +F+ I T+G + + I V +++WD GQ
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 77 RFRSMWERYCRGVNAIVW 94
RFR++ Y RG I+
Sbjct: 63 RFRTITTAYYRGAMGIIL 80
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 68.6 bits (167), Expect = 3e-14
Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 35/160 (21%)
Query: 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQP 76
++ L L+G SGK+T V + + T G K V ++D+GGQ
Sbjct: 3 YRATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETKFQVDKVNFHMFDVGGQR 58
Query: 77 RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYM 136
R W + V AI++ S + +
Sbjct: 59 DERRKWIQCFNDVTAIIFV---VASSSY----------------------------NMVI 87
Query: 137 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176
+ T++L+ + N ++ L I +++ NK+DL
Sbjct: 88 REDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 127
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 65.7 bits (159), Expect = 2e-13
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRF 78
L L+G GK+ + + ++ D I T+G + + ++ V +++WD GQ RF
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 68
Query: 79 RSMWERYCRGVNAIVW 94
R++ Y RG + I+
Sbjct: 69 RTITSSYYRGSHGIII 84
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 64.4 bits (156), Expect = 5e-13
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRF 78
L L+G GKT + + F+ I T+G + + ++ + +++WD GQ RF
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 68
Query: 79 RSMWERYCRGVNAIVW 94
R++ Y RG I+
Sbjct: 69 RTITTAYYRGAMGIML 84
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 62.9 bits (152), Expect = 2e-12
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRF 78
+ L+G GKT V G F T+G + +I V +++WD GQ RF
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 67
Query: 79 RSMWERYCRGVNAIVW 94
RS+ + Y R NA++
Sbjct: 68 RSITQSYYRSANALIL 83
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 61.1 bits (147), Expect = 6e-12
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 11 WFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVW 70
+F +EM + ++GL +GKTT + + GQ IPTVGFN+ +T NV VW
Sbjct: 3 VLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVW 61
Query: 71 DIGGQPRFRSMWERYCRGVNAIVWT 95
D+GGQ + R +W Y G +++
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFV 86
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 60.8 bits (146), Expect = 1e-11
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Query: 6 NRILDWFKSLFW-KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN 64
N F L+ +E+ + ++GL +GKTT + + G+ PT+GFN+ ++ N
Sbjct: 2 NIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLSYKN 60
Query: 65 VTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPM 124
+ + VWD+GGQ R W Y A+++ + S L+ + +
Sbjct: 61 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 120
Query: 125 WLSLLFQ 131
L +
Sbjct: 121 LLVFANK 127
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 58.7 bits (141), Expect = 4e-11
Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQ 75
+++ ++G GK++ + F ++ T+G + + + + +WD GQ
Sbjct: 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 66
Query: 76 PRFRSMWERYCRGVNAIVW 94
RFR++ Y RG ++
Sbjct: 67 ERFRTLTPSYYRGAQGVIL 85
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 58.3 bits (140), Expect = 5e-11
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRF 78
+ ++G GKT+F+ A F+ + TVG + + + +++WD GQ R+
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY 67
Query: 79 RSMWERYCRGVNAIVW 94
R++ Y RG +
Sbjct: 68 RTITTAYYRGAMGFIL 83
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 55.8 bits (133), Expect = 4e-10
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 8 ILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTI 67
+ LF +E ++ +VGL +GKTT + + + PT+G N+ +I N
Sbjct: 3 LFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVINNTRF 61
Query: 68 KVWDIGGQPRFRSMWERYCRGVNAIVW 94
+WDIGGQ RS W Y ++
Sbjct: 62 LMWDIGGQESLRSSWNTYYTNTEFVIV 88
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 55.7 bits (133), Expect = 6e-10
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT--------------KGNVT 66
++L +G GKTTF+ +F+ I TVG + R+ V
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Query: 67 IKVWDIGGQPRFRSMWERYCRGVNAIVW 94
+++WD GQ RFRS+ + R +
Sbjct: 66 LQLWDTAGQERFRSLTTAFFRDAMGFLL 93
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 53.7 bits (128), Expect = 2e-09
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 10 DWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK-----ITKGN 64
D++ F ++ LVG GKT + G F + + +
Sbjct: 1 DFYDVAF-----KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVK 55
Query: 65 VTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94
V +++WD GQ RFRS+ Y R +A++
Sbjct: 56 VKLQMWDTAGQERFRSVTHAYYRDAHALLL 85
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 53.0 bits (126), Expect = 5e-09
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
E++L L+G SGK+TF+ + S +PT G +V ++ D+GGQ R
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRIIHGSG--VPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59
Query: 80 SMWERYCRGVNAIVW 94
W V +I++
Sbjct: 60 RKWIHCFENVTSIMF 74
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 51.8 bits (123), Expect = 1e-08
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWER 84
L+G SGK+TF+ + + PT G + NV K+ D+GGQ R W
Sbjct: 7 LLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFE 63
Query: 85 YCRGVNAIVW 94
V +I++
Sbjct: 64 CFDSVTSILF 73
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 51.5 bits (122), Expect = 2e-08
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
E++L L+G SGK+T V Q G T ++ K++D+GGQ R
Sbjct: 2 EVKLLLLGAGESGKSTIVK-----QMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSER 56
Query: 80 SMWERYCRGVNAIVW 94
W GV AI++
Sbjct: 57 KKWIHCFEGVTAIIF 71
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 49.7 bits (117), Expect = 4e-08
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80
M + +VGL +GKTT + + G+ IPT+GFN+ + N++ VWD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 81 MWERYCRGVNAIVW 94
+W Y + +++
Sbjct: 60 LWRHYFQNTQGLIF 73
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 49.5 bits (117), Expect = 6e-08
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRF 78
++G GK+ ++ +F D T+G +++ + +++WD GQ RF
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 66
Query: 79 RSMWERYCRGVNAIVWT 95
R++ Y RG +
Sbjct: 67 RAVTRSYYRGAAGALMV 83
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 49.1 bits (116), Expect = 7e-08
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQPRF 78
++G +GK+ ++ +F D T+G V +++WD GQ RF
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 67
Query: 79 RSMWERYCRGVNAIVW 94
RS+ Y RG +
Sbjct: 68 RSVTRSYYRGAAGALL 83
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 49.6 bits (117), Expect = 9e-08
Identities = 22/168 (13%), Positives = 50/168 (29%), Gaps = 41/168 (24%)
Query: 24 TLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWE 83
VGL SGKT + +GQ+ ++ + N + P S+
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143
+ + + ++VD+A
Sbjct: 63 QLLDR-----------------------FKSSAR--------------AVVFVVDSAAFQ 85
Query: 144 K-LEASRNELHALIEKPQLI--GIPILVLGNKRDLPNALDEKELIDRI 188
+ ++ L+ ++ + +L+ NK+D+ A K + ++
Sbjct: 86 REVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQL 133
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 47.4 bits (111), Expect = 3e-07
Identities = 110/174 (63%), Positives = 125/174 (71%), Gaps = 41/174 (23%)
Query: 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78
EEMELTLVGLQ SGKTTFVNVIASGQF++DMIPTVGFNMRKITKGNVTIK+WDIGGQPRF
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVD 138
RSMWERYCRGV+AIV+ MVD
Sbjct: 61 RSMWERYCRGVSAIVY-----------------------------------------MVD 79
Query: 139 AADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIMIDF 192
AAD +K+EAS+NELH L++KPQL GIP+LVLGNKRDLP ALDEKELI+++ +
Sbjct: 80 AADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSA 133
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 46.9 bits (110), Expect = 5e-07
Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG----FNMRKITKGNVTIKVWDIGGQPRF 78
L L+G GK++ V GQF + T+G + V ++WD GQ R+
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
Query: 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWL 126
S+ Y RG A + + + + + + L
Sbjct: 69 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIAL 116
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 46.9 bits (110), Expect = 5e-07
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 44/187 (23%)
Query: 8 ILDWFKSLFW--KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNV 65
+L + L +E+ + L+GL +GKTT + +AS S + PT GFN++ +
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGF 60
Query: 66 TIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMW 125
+ VWDIGGQ + R W Y + +++
Sbjct: 61 KLNVWDIGGQRKIRPYWRSYFENTDILIY------------------------------- 89
Query: 126 LSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELI 185
++D+AD + E + EL L+E+ +L +P+L+ NK+DL A E+
Sbjct: 90 ----------VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIA 139
Query: 186 DRIMIDF 192
+ + +
Sbjct: 140 EGLNLHT 146
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 46.6 bits (109), Expect = 6e-07
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
E+ L ++GL +GKTT + + PT+GFN++ + + +WD+GGQ R
Sbjct: 2 ELRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 80 SMWERYCRGVNAIVW 94
S W Y + ++W
Sbjct: 61 SYWRNYFESTDGLIW 75
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 46.0 bits (108), Expect = 1e-06
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRF 78
+ L+G GK+ ++ +F+ + T+G ++ + ++WD GQ R+
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66
Query: 79 RSMWERYCRGVNAIVW 94
R + Y RG +
Sbjct: 67 RRITSAYYRGAVGALL 82
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 45.3 bits (106), Expect = 2e-06
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK----GNVTIKVWDIGGQPRF 78
L +G Q GKT+ + F T+G + T + +++WD GQ RF
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 62
Query: 79 RSMWERYCRGVNAIVW 94
RS+ Y R A V
Sbjct: 63 RSLIPSYIRDSAAAVV 78
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 44.5 bits (104), Expect = 3e-06
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS 80
++G GK+ + +F T+G I + +++WD GQ FRS
Sbjct: 8 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS 67
Query: 81 MWERYCRGVNAIVW 94
+ Y RG +
Sbjct: 68 ITRSYYRGAAGALL 81
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 44.7 bits (104), Expect = 3e-06
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWER 84
+GL +GKTT ++++ + + + + PT ++ GN+ +D+GG + R +W+
Sbjct: 5 FLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKD 63
Query: 85 YCRGVNAIVW 94
Y VN IV+
Sbjct: 64 YFPEVNGIVF 73
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 45.0 bits (105), Expect = 3e-06
Identities = 26/169 (15%), Positives = 46/169 (27%), Gaps = 41/169 (24%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW 82
+ + G Q SGKT+ + ++ + + + + D G + R
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRP--TVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKL 63
Query: 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT 142
Y + LI + D
Sbjct: 64 SDYL------------------------------------KTRAKFVKGLIFMVDSTVDP 87
Query: 143 DKLEASRNELHAL---IEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
KL + L + E GI IL+ NK +L A ++ D +
Sbjct: 88 KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 136
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 44.3 bits (103), Expect = 4e-06
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 44/180 (24%)
Query: 8 ILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTI 67
+L + +K+ +L +GL +GKTT ++++ + +PT+ ++T +T
Sbjct: 3 VLQFLG--LYKKTGKLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELTIAGMTF 59
Query: 68 KVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLS 127
+D+GG + R +W+ Y +N IV+
Sbjct: 60 TTFDLGGHIQARRVWKNYLPAINGIVF--------------------------------- 86
Query: 128 LLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDR 187
+VD AD ++L S+ EL +L+ + +PIL+LGNK D P A+ E+ L +
Sbjct: 87 --------LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREM 138
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 43.0 bits (100), Expect = 9e-06
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN----MRKITKGNVTIKVWDIGGQPRF 78
+ L+G GK++ +N + +F + T+G ++ VT+++WD GQ RF
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 68
Query: 79 RSMWERYCRGVNAIVW 94
RS+ + RG + +
Sbjct: 69 RSLRTPFYRGSDCCLL 84
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 43.1 bits (100), Expect = 1e-05
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG----FNMRKITKGNVTIKVWDIGGQP 76
+++ ++G GKT+ +N + +FS T+G + VT+++WD GQ
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 77 RFRSMWERYCRGVNAIVW 94
RF+S+ + RG + V
Sbjct: 63 RFQSLGVAFYRGADCCVL 80
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 42.7 bits (99), Expect = 1e-05
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT-----KGNVTIKVWDIGGQ 75
+++ ++G GKT+ ++ + ++SQ T+G + T++VWD GQ
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 76 PRFRSMWERYCRGVNAIVW 94
RF+S+ + RG + V
Sbjct: 63 ERFQSLGVAFYRGADCCVL 81
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 42.3 bits (98), Expect = 2e-05
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGGQ 75
+ ++ +VG GKT + + +F + +PTV N T+ ++D GQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 76 PRFRSMWERYCRGVNAIVWT 95
+ + + +
Sbjct: 62 EDYDRLRPLSYPQTDVFLVC 81
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 41.9 bits (97), Expect = 3e-05
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
L +VG GKT + V + QF + +PTV N + + V + +WD G +
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD 64
Query: 80 SMWERYCRGVNAIVWT 95
+ + I+
Sbjct: 65 RLRPLSYPDTDVILMC 80
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 40.8 bits (94), Expect = 6e-05
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK----GNVTIKVWDIGGQP 76
++L L+G GK++ V S F+++ PT+G V ++WD GQ
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 77 RFRSMWERYCRGVNAIVW 94
RF S+ Y R A +
Sbjct: 64 RFASLAPMYYRNAQAALV 81
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 40.0 bits (92), Expect = 1e-04
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGGQPR 77
++ +VG GKT + A+ F ++ +PTV + + ++D GQ
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69
Query: 78 FRSMWERYCRGVNAIVW 94
+ + + +
Sbjct: 70 YDRLRPLSYPMTDVFLI 86
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 39.9 bits (92), Expect = 1e-04
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG---FNMRKITKGNVTIKVWDIGGQP 76
E ++ ++G GK+ +G F + PT+ ++ +++ D G
Sbjct: 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 77 RFRSMWERYCRGVNAIVW 94
+F SM + Y + +
Sbjct: 63 QFASMRDLYIKNGQGFIL 80
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 38.4 bits (88), Expect = 3e-04
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKG----NVTIKVWDIGGQPRF 78
+ L+G C GKT+ V +F+ I T+G + V + +WD GQ RF
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 65
Query: 79 RSMWERYCRGVNAIVW 94
++ Y R N +
Sbjct: 66 HALGPIYYRDSNGAIL 81
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 38.5 bits (88), Expect = 3e-04
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
EM + ++GL +GKTT + + G+ IPT+GFN+ +T N+ +VWD+GG R
Sbjct: 5 EMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 63
Query: 80 SMWERYCRGVNAIVW 94
W Y +A+++
Sbjct: 64 PYWRCYYSNTDAVIY 78
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 37.7 bits (86), Expect = 6e-04
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRF 78
+ ++G GKT +G+F T+G + R+ I + I++WD GQ RF
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 64
Query: 79 -RSMWERYCRGVNAIVW 94
+SM + Y R V+A+V+
Sbjct: 65 RKSMVQHYYRNVHAVVF 81
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 37.7 bits (86), Expect = 7e-04
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGGQP 76
E +L ++G GK+ G F + PT+ + RK + +++ D G
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 77 RFRSMWERYCRGVNAIVW 94
+F +M + Y +
Sbjct: 63 QFTAMRDLYMKNGQGFAL 80
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 37.4 bits (85), Expect = 9e-04
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF----NMRKITKGNVTIKVWDIGGQP 76
+++ +VG GK++ + G F++D T+G ++ +V + +WD GQ
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62
Query: 77 RFRSMWERYCRGVNAIVW 94
F ++ + Y RG A V
Sbjct: 63 EFDAITKAYYRGAQACVL 80
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 36.6 bits (83), Expect = 0.002
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
+ +VG GKT ++V A F ++ +PTV N + + + + +WD G P +
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD 64
Query: 80 SMWERYCRGVNAIVWTGGLY 99
++ +A++ +
Sbjct: 65 NVRPLSYPDSDAVLICFDIS 84
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 36.1 bits (82), Expect = 0.002
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN----MRKITKGNVTIKVWDIGGQ 75
E+++ L+G GK++ + F ++ PT+G + + +WD G
Sbjct: 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 63
Query: 76 PRFRSMWERYCRGVNAIVW 94
RFR++ Y RG A +
Sbjct: 64 ERFRALAPMYYRGSAAAII 82
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 36.1 bits (82), Expect = 0.002
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG---FNMRKITKGNVTIKVWDIGGQP 76
E +L +VG GK+ + F + PT+ I + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 77 RFRSMWERYCRGVNAIVW 94
+ +M ++Y R +
Sbjct: 63 EYSAMRDQYMRTGEGFLC 80
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 36.2 bits (82), Expect = 0.002
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG---FNMRKITKGNVTIKVWDIG 73
+E+ L +VG GK+ F D PT+ I + + D
Sbjct: 2 MQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTA 61
Query: 74 GQPRFRSMWERYCRGVNAIVW 94
GQ F +M E+Y R +
Sbjct: 62 GQEEFGAMREQYMRTGEGFLL 82
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 35.8 bits (81), Expect = 0.003
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGG--QPR 77
E++L + G GK+ V + +F + PT+ R + + +I
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61
Query: 78 FRSMWERYCRGVNAIVWT 95
E + R V
Sbjct: 62 DTIQREGHMRWGEGFVLV 79
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 35.8 bits (81), Expect = 0.004
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGGQ 75
+ ++ +VG GKT + + F + IPTV N V + +WD GQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 76 PRFRSMWERYCRGVNAIVWT 95
+ + + +
Sbjct: 64 EDYDRLRPLSYPQTDVSLIC 83
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 34.6 bits (78), Expect = 0.007
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTV---GFNMRKITKGNVTIKVWDIGGQPRFR 79
L +VG GK+ F D PT+ +I + V D GQ F
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS 66
Query: 80 SMWERYCRGVNAIVWT 95
+M E+Y R + +
Sbjct: 67 AMREQYMRTGDGFLIV 82
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 34.2 bits (77), Expect = 0.011
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTI---KVWDIGGQP 76
+ + + G GK++ V G F + IPTV R++ + +I ++ D G
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61
Query: 77 RFRSMWERYCRGVNAIVWT 95
+F +M +A +
Sbjct: 62 QFPAMQRLSISKGHAFILV 80
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 33.8 bits (76), Expect = 0.013
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFRSM 81
+VG GK+ +F +D PT + RK + V I + D GQ + ++
Sbjct: 9 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 68
Query: 82 WERYCRGVNAIVW 94
+ Y R +
Sbjct: 69 RDNYFRSGEGFLC 81
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 33.5 bits (75), Expect = 0.015
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
L +VG GK+ F D PT+ + KI + + + D GQ F
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG 68
Query: 80 SMWERYCRGVNAIVW 94
+M E+Y R + +
Sbjct: 69 AMREQYMRAGHGFLL 83
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 33.1 bits (74), Expect = 0.026
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN----MRKITKGNVTIKVWDIGGQPRF 78
L LVG +GKTTFV +G+F + + T+G + +G + VWD GQ +F
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 65
Query: 79 RSMWERYCRGVNAIVW 94
+ + Y +
Sbjct: 66 GGLRDGYYIQAQCAII 81
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 32.4 bits (72), Expect = 0.041
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
+ ++G + GK++ GQF PT+ K+ N +++ D GQ +
Sbjct: 7 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS 66
Query: 80 SMWERYCRGVNAIVWT 95
+ Y +N +
Sbjct: 67 IFPQTYSIDINGYILV 82
>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 175
Score = 32.2 bits (72), Expect = 0.046
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Query: 138 DAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE-KELIDRIMIDFWITL 196
+A+D L A+ +E I +++G+K A + + D +
Sbjct: 1 EASDEASLNAAVDETLKFIANRDK---VAVLVGSKLRAAGAEEAAVKFTDALGGAVATMA 57
Query: 197 TLLIRWCESFLHHFGSHPNWA 217
+ E + G+
Sbjct: 58 AAKSFFPEENALYIGTSWGEV 78
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 31.1 bits (69), Expect = 0.10
Identities = 10/70 (14%), Positives = 25/70 (35%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
E+ L ++G SGK++ ++ +G + +++ T V
Sbjct: 5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 64
Query: 80 SMWERYCRGV 89
+ + + V
Sbjct: 65 AKFSGWADAV 74
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 30.7 bits (68), Expect = 0.19
Identities = 20/179 (11%), Positives = 48/179 (26%), Gaps = 26/179 (14%)
Query: 31 SGKTTFVN-------------VIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPR 77
SGKTT + +++ ++R+ + V +I +
Sbjct: 11 SGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREF------VTVEEIMREGY 64
Query: 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLS-------LLF 130
+ + L + + K + + + + L +
Sbjct: 65 GPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY 124
Query: 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIM 189
L+ Y+ D K + +G + NK DL + +++
Sbjct: 125 PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFE 183
>d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Length = 328
Score = 29.8 bits (67), Expect = 0.44
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 188 IMIDFWI---TLTLLIRWCES---FLHH-------FGSHPNWAVKWHTLPKLLFLSLVDS 234
IMID I + + +W LH + N + + + K + ++ VD
Sbjct: 116 IMIDLVIGYTAIQTMAKWARDNDMILHLHRAGNSTYSRQKNHGMNFRVICKWMRMAGVDH 175
Query: 235 YVSSGASDYTEE 246
+ E
Sbjct: 176 IHAGTVVGKLEG 187
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 29.3 bits (65), Expect = 0.51
Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 1/97 (1%)
Query: 23 LTLVGLQCSGKTTFVNVIAS-GQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81
++G +GKTTF+ +IA S + + K V + IG + ++
Sbjct: 34 FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93
Query: 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDL 118
+ N + + + I++ + +D+
Sbjct: 94 YPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI 130
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 28.7 bits (63), Expect = 0.68
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 11/76 (14%)
Query: 25 LVGLQCSGKTTFVN--------VIASGQFSQDMIPTVGFNMRKITKGNVTIKV---WDIG 73
VG +GK+TF+ V + V + +G + D+
Sbjct: 19 AVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNPDVP 78
Query: 74 GQPRFRSMWERYCRGV 89
+ R+ +
Sbjct: 79 SRARYIQCAKDAGVPC 94
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 28.8 bits (63), Expect = 0.81
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 25 LVGLQCSGKTTFVNVIA 41
+VGL GKT +
Sbjct: 7 MVGLPARGKTYISKKLT 23
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.2 bits (61), Expect = 1.1
Identities = 7/72 (9%), Positives = 16/72 (22%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW 82
+ L+G GK+ + + + R I + + W
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW 63
Query: 83 ERYCRGVNAIVW 94
+
Sbjct: 64 LPGHCMAMGDAY 75
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 28.7 bits (63), Expect = 1.1
Identities = 29/225 (12%), Positives = 73/225 (32%), Gaps = 29/225 (12%)
Query: 4 LLNRILDWFKSLFWKEEMEL---TLVGLQCSGKTTFVNVIASGQF---SQDMIPTVGFNM 57
L+NR+ D F ++ +++L +VG Q +GK++ + F ++ +
Sbjct: 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVL 66
Query: 58 RKITKGNVTIKVWDIGGQPR--FRSMWERYCRGVNAIVWTGG--------LYIVSKHIKR 107
+ + + G+ F + + + T L + S H+
Sbjct: 67 QLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLN 126
Query: 108 SAILYYEPVDLGVSG---PMWLSLLFQLIKYMVDAADTDKLEA-------SRNELHALIE 157
++ + G P + ++ V + L + ++ + +
Sbjct: 127 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAK 186
Query: 158 KPQLIGIPILVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRW 202
+ G + + K DL +DE ++ + + L
Sbjct: 187 EVDPQGQRTIGVITKLDL---MDEGTDARDVLENKLLPLRRGYIG 228
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 27.6 bits (60), Expect = 1.4
Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 6/104 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIA------SGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGG 74
M++ + G GKTT V I + F + + R + T I
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDL 118
F S GVN + + + R A V +
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVII 104
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli
[TaxId: 562]}
Length = 305
Score = 28.2 bits (61), Expect = 1.5
Identities = 11/139 (7%), Positives = 29/139 (20%), Gaps = 1/139 (0%)
Query: 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEP-VDLGVSGPMWLSLLFQLIKYMVDAADTDKL 145
G V + I A Y + + + ++ AA
Sbjct: 55 SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGE 114
Query: 146 EASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCES 205
+ + ++ + ++ +L A + + +
Sbjct: 115 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 174
Query: 206 FLHHFGSHPNWAVKWHTLP 224
G+ P
Sbjct: 175 SNDIPGAFDAANSMLVQHP 193
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 27.2 bits (60), Expect = 2.3
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 2/92 (2%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW 82
+TL+G +GKTT ++ IA G + K I I P R ++
Sbjct: 35 VTLIGANGAGKTTTLSAIA-GLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIF 93
Query: 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYE 114
N ++ + IKR +
Sbjct: 94 PELTVYEN-LMMGAYNRKDKEGIKRDLEWIFS 124
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 27.1 bits (59), Expect = 2.5
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 1/89 (1%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKG-NVTIKVWDIGGQPRFRSM 81
+ L GL SGK+T + + + I G N + + R +
Sbjct: 27 IWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRI 86
Query: 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAI 110
E ++ +I R
Sbjct: 87 AEVAKLFADSNSIAITSFISPYRKDRDTA 115
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 27.4 bits (60), Expect = 2.6
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVI------ASGQFSQDMIPTVGFNMRKITKGNVTIKVWD 71
+ + + G SGK++F+N + G ++ + WD
Sbjct: 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 113
Query: 72 IGGQPRFRSMWERY 85
+ G + Y
Sbjct: 114 LPGIGSTNFPPDTY 127
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 26.9 bits (58), Expect = 3.0
Identities = 6/70 (8%), Positives = 16/70 (22%), Gaps = 8/70 (11%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW 82
L +GKTT + + ++ +R + + +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCAR--------GIRPGLIKHTHHDMDVDKPGKDSYELR 56
Query: 83 ERYCRGVNAI 92
+
Sbjct: 57 KAGAAQTIVA 66
>d2isba1 c.8.9.1 (A:2-179) Fumarate hydratase class I beta subunit
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 178
Score = 26.7 bits (59), Expect = 3.2
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMW 125
G + + IK+ + +E DLG+ +W
Sbjct: 128 GAGALAAMSIKKVKGVVWE--DLGMPEAVW 155
>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 26.9 bits (59), Expect = 3.4
Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 264 RQHWSYIIMYIVHKPLAYRLECNMSRVSTTTHSSCTYFSPFQNHKVLCNQ 313
W+ I + R + V+ SC + + LC
Sbjct: 122 SAGWNIPIGLLYCDLPEPR-KPLEKAVANFFSGSCAPCADGTDFPQLCQL 170
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 26.2 bits (56), Expect = 3.6
Identities = 11/108 (10%), Positives = 25/108 (23%), Gaps = 1/108 (0%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMI-PTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWE 83
+G SGK+T+ + I + K ++
Sbjct: 7 TIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFD 66
Query: 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131
+ G+ I ++ L +E + +
Sbjct: 67 TAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDV 114
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 26.7 bits (58), Expect = 3.7
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 4 LLNRILDWFKSLFWKEEMEL---TLVGLQCSGKTTFVNVIASGQF 45
++N++ D F +L + ++L +VG Q SGK++ + I F
Sbjct: 6 VINKLQDVFNTLG-SDPLDLPQIVVVGSQSSGKSSVLENIVGRDF 49
>g1gk9.1 d.153.1.2 (A:,B:) Penicillin acylase {Escherichia coli
[TaxId: 562]}
Length = 765
Score = 26.9 bits (58), Expect = 4.2
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 9/105 (8%)
Query: 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMW--LSLLFQLI 133
P S+ + Y G+NA +I + +L + G + W + +
Sbjct: 86 PEDMSILQGYADGMNA-------WIDKVNTNPETLLPKQFNTFGFTPKRWEPFDVAMIFV 138
Query: 134 KYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA 178
M + E L ++ + + V + L N
Sbjct: 139 GTMANRFSDSTSEIDNLALLTALKDKYGVSQGMAVFNQLKWLVNP 183
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 26.7 bits (58), Expect = 4.2
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 13 KSLFWK--EEMELTLVGLQCSGKTTFVNVI 40
K + + ++ +VG+ GK+TF I
Sbjct: 1 KVQWGRPGNNLKTGIVGMPNVGKSTFFRAI 30
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 26.4 bits (57), Expect = 4.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 21 MELTLVGLQCSGKTTFVNVI 40
ME+ +VG GK+TF +
Sbjct: 1 MEIGVVGKPNVGKSTFFSAA 20
>g1cp9.1 d.153.1.2 (A:,B:) Penicillin acylase {Providencia rettgeri
[TaxId: 587]}
Length = 750
Score = 26.9 bits (58), Expect = 4.5
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMW 125
+ + + Y G+NA +I + K ++ + +D W
Sbjct: 85 SQEQDILRGYADGMNA-------WIKQINTKPDDLMPKQFIDYDFLPSQW 127
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 26.1 bits (56), Expect = 4.6
Identities = 13/146 (8%), Positives = 39/146 (26%), Gaps = 7/146 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW 82
+ G GK+T +A+ Q + G D ++++
Sbjct: 5 YIITGPAGVGKSTTCKRLAA-QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNIT 63
Query: 83 E----RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSG--PMWLSLLFQLIKYM 136
+ + ++ ++ + ++ + V++ LL +
Sbjct: 64 DLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK 123
Query: 137 VDAADTDKLEASRNELHALIEKPQLI 162
D ++ E + +
Sbjct: 124 KDEQMGERCLELVEEFESKGIDERYF 149
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 26.2 bits (56), Expect = 4.9
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWER 84
G GK+T + + + + P G + I K+ D+ G + +
Sbjct: 5 FAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 85 YCRGVNAIVW 94
+ +
Sbjct: 63 VQERIKDEIV 72
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 26.2 bits (57), Expect = 5.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 25 LVGLQCSGKTTFVNVIA 41
LVGLQ SGKTT +A
Sbjct: 15 LVGLQGSGKTTTAAKLA 31
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 26.1 bits (57), Expect = 5.3
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 14/57 (24%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
L+G +GK+ F+ +IA + K +G V + DI P R
Sbjct: 27 CVLLGPTGAGKSVFLELIA--------------GIVKPDRGEVRLNGADITPLPPER 69
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.1 bits (56), Expect = 5.4
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 24 TLVGLQCSGKTTFVNVIA 41
+ G+ G TT +
Sbjct: 5 VVTGVPGVGSTTSSQLAM 22
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 26.2 bits (57), Expect = 5.4
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 25 LVGLQCSGKTTFVNVIA 41
+VG+ GKTT + +A
Sbjct: 14 MVGVNGVGKTTTIGKLA 30
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 25.8 bits (55), Expect = 5.9
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 9/69 (13%)
Query: 22 ELTLVGLQCSGKTTFVNVI------ASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQ 75
++ LVG +GK++ + + + + P +G + DI G
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE---VSEEERFTLADIPGI 59
Query: 76 PRFRSMWER 84
S +
Sbjct: 60 IEGASEGKG 68
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 25.7 bits (55), Expect = 6.3
Identities = 13/86 (15%), Positives = 22/86 (25%), Gaps = 2/86 (2%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW 82
L L G SGK+T +A+ + ++ K Q M
Sbjct: 7 LLLSGHPGSGKSTIAEALAN-LPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQ 65
Query: 83 ERYCRGVNAIVWTGGLYIVSKHIKRS 108
G I+ ++
Sbjct: 66 -IAADVAGRYAKEGYFVILDGVVRPD 90
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 25.9 bits (56), Expect = 6.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 25 LVGLQCSGKTTFVNVIA 41
+VG+ +GKTT +A
Sbjct: 16 VVGVNGTGKTTSCGKLA 32
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 25.8 bits (55), Expect = 6.9
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 3/84 (3%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVIASGQ---FSQDMIPTVGFNMRKITKGNVTIKVWDIGG 74
+ +++ +VG GK+T N I + + S T ++ D G
Sbjct: 6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG 65
Query: 75 QPRFRSMWERYCRGVNAIVWTGGL 98
R + R + +
Sbjct: 66 LRRKSRVEPRTVEKYSNYRVVDSI 89
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 25.9 bits (56), Expect = 7.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 25 LVGLQCSGKTTFVNVIA 41
LVG+Q +GK T +A
Sbjct: 17 LVGVQGTGKATTAGKLA 33
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 25.8 bits (56), Expect = 7.3
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 25 LVGLQCSGKTTFVNVIA 41
+VG+ GKTT + +
Sbjct: 11 VVGVNGVGKTTTIAKLG 27
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 25.4 bits (54), Expect = 8.6
Identities = 8/135 (5%), Positives = 26/135 (19%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWER 84
L G SGK + Q + + + +
Sbjct: 11 LTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAF 70
Query: 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK 144
+ ++ + + G + ++ + +
Sbjct: 71 VATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAA 130
Query: 145 LEASRNELHALIEKP 159
+ ++ P
Sbjct: 131 ARRGEIKGFTGVDDP 145
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 25.1 bits (53), Expect = 9.2
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 2/74 (2%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQD--MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80
+ L+G Q GK+T N+ A S D + + + +
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG 65
Query: 81 MWERYCRGVNAIVW 94
E +
Sbjct: 66 ENEWLHDHCMQVGD 79
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 25.1 bits (53), Expect = 9.6
Identities = 17/154 (11%), Positives = 43/154 (27%), Gaps = 8/154 (5%)
Query: 19 EEMELTLVGLQCSGKTTFVN--------VIASGQFSQDMIPTVGFNMRKITKGNVTIKVW 70
+E+ G +GK++ +N S + + + ++ +
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 74
Query: 71 DIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLF 130
+ R + GL ++ L + ++ V + + +L
Sbjct: 75 AEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 134
Query: 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164
+ A +L R + A Q+
Sbjct: 135 TKADKLASGARKAQLNMVREAVLAFNGDVQVETF 168
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.138 0.446
Gapped
Lambda K H
0.267 0.0417 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,305,600
Number of extensions: 60508
Number of successful extensions: 400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 120
Length of query: 329
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,226,816
Effective search space: 298116288
Effective search space used: 298116288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)