Query psy2971
Match_columns 134
No_of_seqs 111 out of 850
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 22:15:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00898 2A0119 cation transp 99.3 5.9E-12 1.3E-16 106.1 6.6 62 68-130 1-62 (505)
2 KOG0255|consensus 96.7 0.0031 6.7E-08 54.1 5.6 50 58-108 1-50 (521)
3 KOG0253|consensus 91.4 0.34 7.5E-06 43.6 4.8 59 41-100 44-102 (528)
4 TIGR01299 synapt_SV2 synaptic 69.0 5.9 0.00013 37.2 3.7 40 58-98 150-189 (742)
5 TIGR00887 2A0109 phosphate:H+ 46.6 34 0.00074 29.4 4.4 37 63-100 4-40 (502)
6 PF06706 CTV_P6: Citrus triste 39.6 40 0.00087 21.4 2.8 38 74-116 6-43 (51)
7 PRK00720 tatA twin arginine tr 35.2 42 0.00091 23.3 2.6 15 67-81 1-15 (78)
8 PRK02958 tatA twin arginine tr 34.2 44 0.00096 22.9 2.6 16 67-82 1-16 (73)
9 PRK04561 tatA twin arginine tr 26.8 71 0.0015 22.1 2.6 15 67-81 1-15 (75)
10 PRK04598 tatA twin arginine tr 24.9 80 0.0017 22.1 2.6 15 67-81 1-15 (81)
11 PRK00442 tatA twin arginine tr 24.4 78 0.0017 22.7 2.5 16 67-82 1-16 (92)
12 PRK01833 tatA twin arginine tr 24.0 86 0.0019 21.5 2.6 15 67-81 1-15 (74)
13 TIGR03358 VI_chp_5 type VI sec 22.2 1.9E+02 0.0041 22.5 4.5 13 14-26 4-16 (159)
14 PF05591 DUF770: Protein of un 21.8 1.8E+02 0.0038 22.5 4.2 13 14-26 3-15 (157)
15 PRK03554 tatA twin arginine tr 21.4 1E+02 0.0022 22.0 2.6 15 67-81 1-15 (89)
No 1
>TIGR00898 2A0119 cation transport protein.
Probab=99.28 E-value=5.9e-12 Score=106.13 Aligned_cols=62 Identities=23% Similarity=0.436 Sum_probs=56.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCccccCCCCCCCChhhhhhhcccCCCC
Q psy2971 68 GEFGRYQKILFFAMIPFAFSVAFVYFAQIFITVIPERYWCQVPELSHLDPEQSQFYGIKFIFS 130 (134)
Q Consensus 68 G~fGryQ~~l~~Ll~l~~i~~A~h~ls~VFlaatP~~H~C~vP~~~n~s~~e~lnlSIP~e~s 130 (134)
|+|||||++++++++++.+++++|.++++|++++|+ |||++|+..+++.++|++.++|.+.+
T Consensus 1 g~~g~~q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~-~~c~~~~~~~~~~~~~~~~~~~~~~~ 62 (505)
T TIGR00898 1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPE-HHCRLPDAANLSSRCELNLTLPRLPD 62 (505)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-cccCCCCcccCChHhHhceeccCCCC
Confidence 899999999999999999999999999999999996 99999987777777789999997654
No 2
>KOG0255|consensus
Probab=96.73 E-value=0.0031 Score=54.14 Aligned_cols=50 Identities=40% Similarity=0.749 Sum_probs=44.9
Q ss_pred CChHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccc
Q psy2971 58 LDFDDILPHLGEFGRYQKILFFAMIPFAFSVAFVYFAQIFITVIPERYWCQ 108 (134)
Q Consensus 58 m~FDdiL~~IG~fGryQ~~l~~Ll~l~~i~~A~h~ls~VFlaatP~~H~C~ 108 (134)
+++|+++..+|++|+||+...++.++..++.+.|.+.++|.+..|+ |+|.
T Consensus 1 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~ 50 (521)
T KOG0255|consen 1 SDLDEILSSVGDFGRYQKLLLLLLGLPSIFSALHSFAQIFLAFVPD-HHCT 50 (521)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHHHHhHHHHHHHHHHhhccCCC-chhh
Confidence 3578889999999999999999999999999999999999999996 6663
No 3
>KOG0253|consensus
Probab=91.40 E-value=0.34 Score=43.55 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy2971 41 NGGPLANGSNANPIETDLDFDDILPHLGEFGRYQKILFFAMIPFAFSVAFVYFAQIFITV 100 (134)
Q Consensus 41 ~~~~~~~~~~~~~~~~~m~FDdiL~~IG~fGryQ~~l~~Ll~l~~i~~A~h~ls~VFlaa 100 (134)
++.+++-+++.....+....||.+..+| |||||..++++....-+--++..+..-++..
T Consensus 44 ~~~~~~~~~~~~~~~k~~tv~ea~~aig-fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~ 102 (528)
T KOG0253|consen 44 SDDDLFDSNDFSDTAKSFTVDEAMNAIG-FGRFQWYLFFVAGMGWMADAMEMMLLSLILP 102 (528)
T ss_pred cccCCccccccccccceeeehhhhhhcC-cccchhhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344455555555567778899999999 9999998888877766666666666666654
No 4
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=68.98 E-value=5.9 Score=37.24 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=31.2
Q ss_pred CChHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2971 58 LDFDDILPHLGEFGRYQKILFFAMIPFAFSVAFVYFAQIFI 98 (134)
Q Consensus 58 m~FDdiL~~IG~fGryQ~~l~~Ll~l~~i~~A~h~ls~VFl 98 (134)
.+||++++++| +|++|+++++++++..+..++......++
T Consensus 150 ~~~d~~l~~~~-~~~~~~~l~~i~~l~~~~~g~d~~~is~i 189 (742)
T TIGR01299 150 QQYELIIQECG-HGRFQWALFFVLGLALMADGVEVFVVGFV 189 (742)
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999987 99999998888887777777655544444
No 5
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=46.57 E-value=34 Score=29.35 Aligned_cols=37 Identities=14% Similarity=0.014 Sum_probs=28.0
Q ss_pred HHHhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy2971 63 ILPHLGEFGRYQKILFFAMIPFAFSVAFVYFAQIFITV 100 (134)
Q Consensus 63 iL~~IG~fGryQ~~l~~Ll~l~~i~~A~h~ls~VFlaa 100 (134)
.++++| ||++|.++++++++..+..++......++..
T Consensus 4 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~ 40 (502)
T TIGR00887 4 EADTAP-FGWQHFRAIVIAGVGFFTDSYDLFCISLVTK 40 (502)
T ss_pred hhhccc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445655 9999999988888888888887766666544
No 6
>PF06706 CTV_P6: Citrus tristeza virus 6-kDa protein; InterPro: IPR009584 This family consists of several Citrus tristeza virus (CTV) 6 kDa, 51 residue long hydrophobic (P6) proteins. The function of this family is unknown.
Probab=39.62 E-value=40 Score=21.37 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCccccCCCCCCCC
Q psy2971 74 QKILFFAMIPFAFSVAFVYFAQIFITVIPERYWCQVPELSHLD 116 (134)
Q Consensus 74 Q~~l~~Ll~l~~i~~A~h~ls~VFlaatP~~H~C~vP~~~n~s 116 (134)
|..+.+|+.+. +++||-.+..+.+. - |||...+..|.|
T Consensus 6 QGfLT~LvG~~-VF~AF~~~iiIvit--i--yrctt~pvrn~s 43 (51)
T PF06706_consen 6 QGFLTFLVGIA-VFKAFAALIIIVIT--I--YRCTTKPVRNTS 43 (51)
T ss_pred HHHHHHHHHHH-HHHHHHHHhEEEEE--E--EEeccccccCCC
Confidence 44555555554 34777665555553 3 999877665544
No 7
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=35.21 E-value=42 Score=23.34 Aligned_cols=15 Identities=20% Similarity=0.625 Sum_probs=10.8
Q ss_pred hCCCchHHHHHHHHH
Q psy2971 67 LGEFGRYQKILFFAM 81 (134)
Q Consensus 67 IG~fGryQ~~l~~Ll 81 (134)
.|++|.|++++++++
T Consensus 1 Mgg~g~~ellIIlvI 15 (78)
T PRK00720 1 MGSFSIWHWLIVLAV 15 (78)
T ss_pred CCCCcHHHHHHHHHH
Confidence 378999998765444
No 8
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=34.24 E-value=44 Score=22.89 Aligned_cols=16 Identities=13% Similarity=0.621 Sum_probs=11.4
Q ss_pred hCCCchHHHHHHHHHH
Q psy2971 67 LGEFGRYQKILFFAMI 82 (134)
Q Consensus 67 IG~fGryQ~~l~~Ll~ 82 (134)
.|++|.+++++++++.
T Consensus 1 mg~~g~~elliIl~Iv 16 (73)
T PRK02958 1 MGSFSIWHWLIVLVIV 16 (73)
T ss_pred CCCccHHHHHHHHHHH
Confidence 3789999988654443
No 9
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=26.78 E-value=71 Score=22.12 Aligned_cols=15 Identities=13% Similarity=0.572 Sum_probs=10.7
Q ss_pred hCCCchHHHHHHHHH
Q psy2971 67 LGEFGRYQKILFFAM 81 (134)
Q Consensus 67 IG~fGryQ~~l~~Ll 81 (134)
.|++|.+++++++++
T Consensus 1 Mgg~s~~ellIIlvI 15 (75)
T PRK04561 1 MGSFSIWHWLVVLVI 15 (75)
T ss_pred CCCCcHHHHHHHHHH
Confidence 478999997765443
No 10
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=24.90 E-value=80 Score=22.07 Aligned_cols=15 Identities=13% Similarity=0.428 Sum_probs=10.4
Q ss_pred hCCCchHHHHHHHHH
Q psy2971 67 LGEFGRYQKILFFAM 81 (134)
Q Consensus 67 IG~fGryQ~~l~~Ll 81 (134)
+|++|.+++++++++
T Consensus 1 m~glg~~elliIlvi 15 (81)
T PRK04598 1 MGGISIWQLLIIAVI 15 (81)
T ss_pred CCCccHHHHHHHHHH
Confidence 367899997765433
No 11
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=24.38 E-value=78 Score=22.68 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=11.2
Q ss_pred hCCCchHHHHHHHHHH
Q psy2971 67 LGEFGRYQKILFFAMI 82 (134)
Q Consensus 67 IG~fGryQ~~l~~Ll~ 82 (134)
.|.+|.+++++++++.
T Consensus 1 Mg~~g~~elliIlvIv 16 (92)
T PRK00442 1 MGIFDWKHWIVILVVV 16 (92)
T ss_pred CCCccHHHHHHHHHHH
Confidence 4789999987654443
No 12
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=23.99 E-value=86 Score=21.51 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=10.6
Q ss_pred hCCCchHHHHHHHHH
Q psy2971 67 LGEFGRYQKILFFAM 81 (134)
Q Consensus 67 IG~fGryQ~~l~~Ll 81 (134)
.|++|.+++++.+++
T Consensus 1 m~g~g~~elliIl~i 15 (74)
T PRK01833 1 MGGISIWQLLIIVAI 15 (74)
T ss_pred CCCccHHHHHHHHHH
Confidence 367999998765443
No 13
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=22.21 E-value=1.9e+02 Score=22.54 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=11.2
Q ss_pred cCCCCCCeeeeee
Q psy2971 14 NMIPEPPVKMTYI 26 (134)
Q Consensus 14 ~~~~~~~~~~~~~ 26 (134)
+-+|.|.|++||-
T Consensus 4 ~~~pk~RV~I~Y~ 16 (159)
T TIGR03358 4 SRVRKPRVQITYD 16 (159)
T ss_pred ccCCCCceeEEEE
Confidence 4578999999997
No 14
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=21.78 E-value=1.8e+02 Score=22.49 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=11.1
Q ss_pred cCCCCCCeeeeee
Q psy2971 14 NMIPEPPVKMTYI 26 (134)
Q Consensus 14 ~~~~~~~~~~~~~ 26 (134)
+-+|.|.|++||-
T Consensus 3 ~~~~~~RV~I~Y~ 15 (157)
T PF05591_consen 3 SRAPKPRVNITYD 15 (157)
T ss_pred CCCCCCceEEEEe
Confidence 3579999999997
No 15
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=21.41 E-value=1e+02 Score=22.02 Aligned_cols=15 Identities=13% Similarity=0.428 Sum_probs=10.3
Q ss_pred hCCCchHHHHHHHHH
Q psy2971 67 LGEFGRYQKILFFAM 81 (134)
Q Consensus 67 IG~fGryQ~~l~~Ll 81 (134)
+|++|.+++++++++
T Consensus 1 M~glG~~eLlIIlvI 15 (89)
T PRK03554 1 MGGISIWQLLIIAVI 15 (89)
T ss_pred CCCccHHHHHHHHHH
Confidence 367899997765433
Done!