Query psy2971
Match_columns 134
No_of_seqs 111 out of 850
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 22:15:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xdb_A TOXN; abortive infectio 19.6 28 0.00097 26.2 0.5 22 8-29 82-103 (171)
2 1q90_R Cytochrome B6-F complex 10.3 3.1E+02 0.011 16.4 3.8 25 69-93 8-32 (49)
3 2yus_A SWI/SNF-related matrix- 10.1 1.5E+02 0.005 19.1 1.9 33 42-76 11-43 (79)
4 3u6x_S ORF48; helix/beta, rece 9.9 1.1E+02 0.0037 21.1 1.3 10 18-27 13-22 (105)
5 4glk_A ABIQ; alpha beta, endon 8.5 91 0.0031 23.3 0.5 20 8-27 85-104 (172)
6 2lau_A THAP domain-containing 8.3 1.4E+02 0.0047 18.7 1.2 14 100-114 1-14 (81)
7 1eys_M Photosynthetic reaction 7.2 9.6E+02 0.033 19.7 6.1 12 59-70 34-45 (324)
8 2lxi_A RNA-binding protein 10; 7.2 86 0.003 19.6 -0.2 18 16-33 70-87 (91)
9 2l16_A SEC-independent protein 6.9 3E+02 0.01 17.8 2.4 15 68-82 3-17 (78)
10 2eqf_A Tumor necrosis factor, 6.2 2.6E+02 0.0089 16.6 1.6 15 101-116 7-21 (46)
No 1
>2xdb_A TOXN; abortive infection, phage; HET: A23; 2.55A {Pectobacterium atrosepticum} PDB: 2xd0_A* 2xdd_A*
Probab=19.57 E-value=28 Score=26.24 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=17.7
Q ss_pred cccccccCCCCCCeeeeeeCCC
Q psy2971 8 ASLNMENMIPEPPVKMTYILPK 29 (134)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~ 29 (134)
+.+|..||||-|.=.++.++-+
T Consensus 82 gvin~nnMIPV~~~~~~~idi~ 103 (171)
T 2xdb_A 82 GLINLKFMIPIIEAEVSLLDLG 103 (171)
T ss_dssp EEECGGGCEECCGGGEEECCGG
T ss_pred EEEEeecccccCccceEEecCC
Confidence 5689999999998888877543
No 2
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=10.30 E-value=3.1e+02 Score=16.35 Aligned_cols=25 Identities=0% Similarity=0.034 Sum_probs=15.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHH
Q psy2971 69 EFGRYQKILFFAMIPFAFSVAFVYF 93 (134)
Q Consensus 69 ~fGryQ~~l~~Ll~l~~i~~A~h~l 93 (134)
+++|-|.+..+++....++.+.-..
T Consensus 8 dm~RRqfln~l~~G~~a~~a~~~~~ 32 (49)
T 1q90_R 8 DMNKRNIMNLILAGGAGLPITTLAL 32 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888877766665554444333
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=10.07 E-value=1.5e+02 Score=19.07 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHhhCCCchHHHH
Q psy2971 42 GGPLANGSNANPIETDLDFDDILPHLGEFGRYQKI 76 (134)
Q Consensus 42 ~~~~~~~~~~~~~~~~m~FDdiL~~IG~fGryQ~~ 76 (134)
.+........|..+.+.-|-++++..| ++|..+
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G--~~W~~I 43 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK--DDWNKV 43 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS--SCHHHH
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC--CCHHHH
Confidence 334444456777777777888888888 788755
No 4
>3u6x_S ORF48; helix/beta, receptor binding complex, phage tail baseplate, protein; 2.60A {Lactococcus phage tp901-1}
Probab=9.87 E-value=1.1e+02 Score=21.09 Aligned_cols=10 Identities=40% Similarity=0.494 Sum_probs=8.3
Q ss_pred CCCeeeeeeC
Q psy2971 18 EPPVKMTYIL 27 (134)
Q Consensus 18 ~~~~~~~~~~ 27 (134)
.|+|||||-.
T Consensus 13 qpevkvt~yk 22 (105)
T 3u6x_S 13 QPEVKVTSYK 22 (105)
T ss_dssp CCCEEEEEEE
T ss_pred CCceEEEEee
Confidence 5899999864
No 5
>4glk_A ABIQ; alpha beta, endonuclease, RNA antiq, hydrolase; 2.16A {Lactococcus lactis}
Probab=8.54 E-value=91 Score=23.30 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=15.6
Q ss_pred cccccccCCCCCCeeeeeeC
Q psy2971 8 ASLNMENMIPEPPVKMTYIL 27 (134)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ 27 (134)
+.+|..||||-|.=-.+.++
T Consensus 85 gvi~lnnMIPVp~~~~~~id 104 (172)
T 4glk_A 85 GYLLHHNMIPVPDSELIPLP 104 (172)
T ss_dssp EEEEGGGCEECCGGGEEECC
T ss_pred EEEEEeccccCChHHeeEec
Confidence 57899999999876666654
No 6
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=8.32 E-value=1.4e+02 Score=18.66 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=11.2
Q ss_pred ccCCCccccCCCCCC
Q psy2971 100 VIPERYWCQVPELSH 114 (134)
Q Consensus 100 atP~~H~C~vP~~~n 114 (134)
++|. +.|.|++|.|
T Consensus 1 g~pG-~~C~v~gC~n 14 (81)
T 2lau_A 1 GSPG-FTCCVPGCYN 14 (81)
T ss_dssp CCSC-CSCCCSSSSS
T ss_pred CCCC-CEEEeCCCcC
Confidence 3575 9999999975
No 7
>1eys_M Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: f.26.1.1
Probab=7.25 E-value=9.6e+02 Score=19.73 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=7.7
Q ss_pred ChHHHHHhhCCC
Q psy2971 59 DFDDILPHLGEF 70 (134)
Q Consensus 59 ~FDdiL~~IG~f 70 (134)
.|.-.+.++|++
T Consensus 34 ~~~~~~G~~gda 45 (324)
T 1eys_M 34 IFSYWLGKIGDA 45 (324)
T ss_dssp BCCTTHHHHSCC
T ss_pred chHHHHHhhccc
Confidence 455577777765
No 8
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=7.22 E-value=86 Score=19.62 Aligned_cols=18 Identities=33% Similarity=0.231 Sum_probs=13.2
Q ss_pred CCCCCeeeeeeCCCCCCc
Q psy2971 16 IPEPPVKMTYILPKEIPI 33 (134)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (134)
+-.-+++|.|+.|+....
T Consensus 70 ~~gr~i~V~~a~~~~~~~ 87 (91)
T 2lxi_A 70 ILGQKVSMHYSDPKPKIN 87 (91)
T ss_dssp ETTEEEEEECCCSCCCCS
T ss_pred ECCEEEEEEEcCCCCCCC
Confidence 566789999998875443
No 9
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=6.86 E-value=3e+02 Score=17.84 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=9.9
Q ss_pred CCCchHHHHHHHHHH
Q psy2971 68 GEFGRYQKILFFAMI 82 (134)
Q Consensus 68 G~fGryQ~~l~~Ll~ 82 (134)
+++|.+++++.+++.
T Consensus 3 f~ig~~ElliIlvVa 17 (78)
T 2l16_A 3 SNIGIPGLILIFVIA 17 (78)
T ss_dssp SSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 568888877654443
No 10
>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=6.17 E-value=2.6e+02 Score=16.61 Aligned_cols=15 Identities=27% Similarity=0.674 Sum_probs=11.9
Q ss_pred cCCCccccCCCCCCCC
Q psy2971 101 IPERYWCQVPELSHLD 116 (134)
Q Consensus 101 tP~~H~C~vP~~~n~s 116 (134)
.| .-+|+.|+|++..
T Consensus 7 ~p-KqrC~apgCdhyg 21 (46)
T 2eqf_A 7 GP-KQRCRAPACDHFG 21 (46)
T ss_dssp CC-SCSCSSTTCCSCC
T ss_pred cc-cccccCccccccc
Confidence 35 5899999999764
Done!