Query psy2971
Match_columns 134
No_of_seqs 111 out of 850
Neff 5.1
Searched_HMMs 13730
Date Fri Aug 16 22:15:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2971.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2971hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90r_ f.23.12.1 (R:) ISP sub 16.6 83 0.006 16.9 3.8 29 67-95 4-32 (39)
2 d1z9ha1 a.45.1.1 (A:213-373) M 13.4 72 0.0053 21.7 3.2 21 64-84 52-72 (161)
3 d1xlqa1 d.15.4.1 (A:1-106) 2Fe 8.8 60 0.0043 20.1 1.3 10 22-31 2-11 (106)
4 d1b56a_ b.60.1.2 (A:) Epiderma 7.7 52 0.0038 21.3 0.6 28 50-78 7-34 (133)
5 d2bt6a1 d.15.4.1 (A:5-108) Adr 7.7 68 0.005 19.7 1.2 11 20-30 2-12 (104)
6 d3bzka4 b.40.4.5 (A:637-730) T 6.5 95 0.0069 18.5 1.4 23 20-42 70-93 (94)
7 d1e9ma_ d.15.4.1 (A:) 2Fe-2S f 6.4 90 0.0066 19.0 1.3 10 22-31 2-11 (106)
8 d2a0aa1 b.60.1.2 (A:1-131) Der 6.4 52 0.0038 21.2 -0.0 26 49-75 5-30 (131)
9 d1v54d_ f.23.1.1 (D:) Mitochon 6.3 3.7E+02 0.027 17.7 4.9 36 71-107 73-108 (144)
10 d1zfda_ g.37.1.1 (A:) SWI5 zin 6.1 95 0.0069 15.6 1.0 9 105-113 4-12 (32)
No 1
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=16.59 E-value=83 Score=16.94 Aligned_cols=29 Identities=0% Similarity=0.018 Sum_probs=18.4
Q ss_pred hCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy2971 67 LGEFGRYQKILFFAMIPFAFSVAFVYFAQ 95 (134)
Q Consensus 67 IG~fGryQ~~l~~Ll~l~~i~~A~h~ls~ 95 (134)
+=+.||-|.+-.+++.-.+.+.+.....+
T Consensus 4 VpDMgrR~~MNLll~G~~~~~~~g~l~py 32 (39)
T d1q90r_ 4 VPDMNKRNIMNLILAGGAGLPITTLALGY 32 (39)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHhccchhhhhhccce
Confidence 34578999887777665555555544433
No 2
>d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}
Probab=13.45 E-value=72 Score=21.73 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=15.9
Q ss_pred HHhhCCCchHHHHHHHHHHHH
Q psy2971 64 LPHLGEFGRYQKILFFAMIPF 84 (134)
Q Consensus 64 L~~IG~fGryQ~~l~~Ll~l~ 84 (134)
+..+|+||.+++++...+..+
T Consensus 52 i~~~~~f~~~~r~~~~~~Ga~ 72 (161)
T d1z9ha1 52 IVREGKFGAVEGAVAKYMGAA 72 (161)
T ss_dssp HHHHSCCCHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHcCHH
Confidence 456899999999977665543
No 3
>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]}
Probab=8.83 E-value=60 Score=20.06 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=8.1
Q ss_pred eeeeeCCCCC
Q psy2971 22 KMTYILPKEI 31 (134)
Q Consensus 22 ~~~~~~~~~~ 31 (134)
||||++||..
T Consensus 2 KIt~i~~dG~ 11 (106)
T d1xlqa1 2 KVVYVSHDGT 11 (106)
T ss_dssp EEEEECTTSC
T ss_pred EEEEECCCCC
Confidence 8999999843
No 4
>d1b56a_ b.60.1.2 (A:) Epidermal fatty acid binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.68 E-value=52 Score=21.26 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=20.3
Q ss_pred CCCCCCCCCChHHHHHhhCCCchHHHHHH
Q psy2971 50 NANPIETDLDFDDILPHLGEFGRYQKILF 78 (134)
Q Consensus 50 ~~~~~~~~m~FDdiL~~IG~fGryQ~~l~ 78 (134)
+.|.....-+||+.|+.+| .|...+.+.
T Consensus 7 Gtwkl~~seNfd~fLkalG-v~~~~Rk~a 34 (133)
T d1b56a_ 7 GRWRLVDSKGFDEYMKELG-VGIALRKMG 34 (133)
T ss_dssp EEEEEEECCSHHHHHHHHT-CCHHHHHHH
T ss_pred EEEEEEeccCHHHHHHHhC-CCHHHHHHh
Confidence 4455555678999999999 777766543
No 5
>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.66 E-value=68 Score=19.69 Aligned_cols=11 Identities=9% Similarity=0.268 Sum_probs=9.2
Q ss_pred CeeeeeeCCCC
Q psy2971 20 PVKMTYILPKE 30 (134)
Q Consensus 20 ~~~~~~~~~~~ 30 (134)
+|+|||+++|-
T Consensus 2 ~i~i~~i~~dG 12 (104)
T d2bt6a1 2 KITVHFINRDG 12 (104)
T ss_dssp EEEEEEECTTS
T ss_pred eEEEEEECCCC
Confidence 68999999884
No 6
>d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.47 E-value=95 Score=18.48 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=15.6
Q ss_pred CeeeeeeCCCCCCc-cccccccCC
Q psy2971 20 PVKMTYILPKEIPI-FKLDEKENG 42 (134)
Q Consensus 20 ~~~~~~~~~~~~~~-~~~~~~~~~ 42 (134)
+++|+.++++.-.+ +-+|+.+++
T Consensus 70 ~~~V~~id~~~~~i~LS~K~~e~P 93 (94)
T d3bzka4 70 KVKVMEVDIPRNRVGLSMRMSDTP 93 (94)
T ss_dssp EEEEEEEETTTTEEEEESCTTCCC
T ss_pred EEEEEEEECCCCEEEEEEeccCCC
Confidence 56778888876665 666665554
No 7
>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]}
Probab=6.42 E-value=90 Score=19.03 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=8.1
Q ss_pred eeeeeCCCCC
Q psy2971 22 KMTYILPKEI 31 (134)
Q Consensus 22 ~~~~~~~~~~ 31 (134)
||||+.||..
T Consensus 2 KIt~i~~dG~ 11 (106)
T d1e9ma_ 2 KIIFIEHNGT 11 (106)
T ss_dssp EEEEECTTSC
T ss_pred EEEEECCCCC
Confidence 8899999843
No 8
>d2a0aa1 b.60.1.2 (A:1-131) Der f 13 allergen {House dust mite (Dermatophagoides farinae) [TaxId: 6954]}
Probab=6.38 E-value=52 Score=21.19 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=18.5
Q ss_pred CCCCCCCCCCChHHHHHhhCCCchHHH
Q psy2971 49 SNANPIETDLDFDDILPHLGEFGRYQK 75 (134)
Q Consensus 49 ~~~~~~~~~m~FDdiL~~IG~fGryQ~ 75 (134)
++.|.....-+||+.|+.+| .+...+
T Consensus 5 ~Gtwkl~~seNfdefLk~lG-v~~~~R 30 (131)
T d2a0aa1 5 EGKYKLEKSEKFDEFLDKLG-VGFMVK 30 (131)
T ss_dssp CEEEEECCCCSHHHHHHHHT-CCHHHH
T ss_pred cEEEEEEeccCHHHHHHHcC-CCHHHH
Confidence 35566666678999999998 555443
No 9
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.26 E-value=3.7e+02 Score=17.74 Aligned_cols=36 Identities=8% Similarity=0.127 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCccc
Q psy2971 71 GRYQKILFFAMIPFAFSVAFVYFAQIFITVIPERYWC 107 (134)
Q Consensus 71 GryQ~~l~~Ll~l~~i~~A~h~ls~VFlaatP~~H~C 107 (134)
|-|...+...+...++...++.+.-.|+...++ |-+
T Consensus 73 gewK~v~g~~~~~i~~s~~i~~~~r~~v~p~~P-~T~ 108 (144)
T d1v54d_ 73 NEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIP-HTF 108 (144)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC-GGG
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCC
Confidence 445544444444445566666667777776554 655
No 10
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.13 E-value=95 Score=15.56 Aligned_cols=9 Identities=33% Similarity=0.766 Sum_probs=8.2
Q ss_pred ccccCCCCC
Q psy2971 105 YWCQVPELS 113 (134)
Q Consensus 105 H~C~vP~~~ 113 (134)
|.|..|+|.
T Consensus 4 ~~C~~pgC~ 12 (32)
T d1zfda_ 4 YSCDHPGCD 12 (32)
T ss_dssp BCCCCTTCC
T ss_pred eECcCCCCC
Confidence 899999986
Done!