RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2971
         (134 letters)



>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein.  [Transport and
           binding proteins, Cations and iron carrying compounds].
          Length = 505

 Score = 30.8 bits (70), Expect = 0.20
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 68  GEFGRYQKILFFAMIPFAFSVAFVYFAQIFITVIPERYWCQVP---ELSH 114
           GEFG +Q+  F  +      +AF +   +F+   PE + C++P    LS 
Sbjct: 1   GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPE-HHCRLPDAANLSS 49


>gnl|CDD|233144 TIGR00835, agcS, amino acid carrier protein.  The Alanine or
           Glycine: Cation Symporter (AGCS) Family (TC 2.A.25)
           Members of the AGCS family transport alanine and/or
           glycine in symport with Na+ and or H+.
          Length = 425

 Score = 26.5 bits (59), Expect = 5.2
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 66  HLGEFGRYQKILFFAMIPFAFSVAFVYF 93
            LG FG     +  A+  FAFS    ++
Sbjct: 329 GLGSFGAV--FVAVALFLFAFSTIIGWY 354


>gnl|CDD|234992 PRK01919, tatB, sec-independent translocase; Provisional.
          Length = 169

 Score = 25.7 bits (57), Expect = 7.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 1  MHETVEDASLNMENMI 16
          M    E A+ ++EN I
Sbjct: 62 MKTDFESAARDVENTI 77


>gnl|CDD|219154 pfam06738, DUF1212, Protein of unknown function (DUF1212).  This
           family represents a conserved region within a number of
           hypothetical membrane proteins of unknown function found
           in eukaryotes, bacteria and archaea.
          Length = 193

 Score = 25.5 bits (57), Expect = 7.7
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 60  FDDILPHLGEFGRYQKILFFAMIPFAFSVAF 90
            D+I      + R+  +L   +   AF+V F
Sbjct: 91  LDEIDRAPPPYPRWLVVLAAGLASAAFAVLF 121


>gnl|CDD|165189 PHA02851, PHA02851, EEV glycoprotein; Provisional.
          Length = 223

 Score = 25.5 bits (55), Expect = 9.3
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 8/38 (21%)

Query: 4   TVEDASLNMENMIPEPPVKMTYILPKEIPIFKLDEKEN 41
           TV D + N+EN+        TY LP++  I+ LDEK +
Sbjct: 142 TVYDVTDNVENI--------TYDLPQDSIIYDLDEKSD 171


>gnl|CDD|240301 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit;
           Provisional.
          Length = 1054

 Score = 25.8 bits (57), Expect = 10.0
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 49  SNANPIETDLDFDDILPHLGEFGRYQKI 76
           S    IE D  ++D++P   E G Y  I
Sbjct: 236 STCQ-IEVDCSYEDLIPLPPE-GEYLTI 261


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.144    0.447 

Gapped
Lambda     K      H
   0.267   0.0784    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,308,640
Number of extensions: 676443
Number of successful extensions: 845
Number of sequences better than 10.0: 1
Number of HSP's gapped: 845
Number of HSP's successfully gapped: 28
Length of query: 134
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 48
Effective length of database: 7,123,158
Effective search space: 341911584
Effective search space used: 341911584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.5 bits)