RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2971
         (134 letters)



>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides,
          nucleotides, nucleo nucleoside interconversions, spine,
          structural genomics; 1.80A {Bacillus anthracis} PDB:
          2a1y_A*
          Length = 336

 Score = 26.1 bits (58), Expect = 4.2
 Identities = 3/15 (20%), Positives = 8/15 (53%)

Query: 50 NANPIETDLDFDDIL 64
          + + +    D++DI 
Sbjct: 6  HHHHMGNVFDYEDIQ 20


>4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A
           {Dictyostelium discoideum}
          Length = 290

 Score = 25.7 bits (56), Expect = 5.6
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 16  IPEPPVKMTYILPKEIPIFKLDEKENGGPLA-NGSNANPIETDLDFDDILPHLGEFGR 72
                 K  Y L   + +    + +N G +   GS     E +  F+++  H    G+
Sbjct: 178 KLGKKDKAVYKLTSTVMLSIETDNDNTGKVNLAGSLTRQDEKEYTFNEVDTHCVNIGK 235


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.144    0.447 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,151,296
Number of extensions: 123160
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 3
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.3 bits)