BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2972
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V2Y|A Chain A, Solution Structure Of Mouse Hypothetical Gene (Riken Cdna
3300001g02) Product Homologous To Ubiquitin Fold
Length = 105
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 45 GQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYW 104
G ++ C + D + +V+ +N V DLK+ I+R + ++ +R+G + ISW +VW++Y
Sbjct: 7 GMTVRVC-KMDGEVMPVVVV-QNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYH 64
Query: 105 LSFDGIKLTNEKSLLSELGIESQCEITFVKRLKDK 139
L+ G KLT ++ L + GI ++ E++F+K+L K
Sbjct: 65 LTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99
>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWZ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
Length = 501
Score = 37.4 bits (85), Expect = 0.003, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 13 EAIKNIRTQNTLSHLP--------QDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVIS 64
E I+ R Q++ P DV+V+E+K+ L+ + + + K + I+
Sbjct: 73 EVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKIN 132
Query: 65 PKNTRVSDLKRTIERQITMQMKRKGL 90
PKN DL++ I R+ TM++ +KG
Sbjct: 133 PKNYTDEDLEK-ITRRFTMELAKKGF 157
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 35.8 bits (81), Expect = 0.008, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 13 EAIKNIRTQNTLSHLP--------QDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVIS 64
E I+ R Q++ P DV+V+E+K+ L+ + + + K + I+
Sbjct: 68 EVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKIN 127
Query: 65 PKNTRVSDLKRTIERQITMQMKRKGL 90
PKN ++L++ I R+ TM++ +KG
Sbjct: 128 PKNYTDNELEK-ITRRFTMELAKKGF 152
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 35.8 bits (81), Expect = 0.009, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 13 EAIKNIRTQNTLSHLP--------QDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVIS 64
E I+ R Q++ P DV+V+E+K+ L+ + + + K + I+
Sbjct: 68 EVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKIN 127
Query: 65 PKNTRVSDLKRTIERQITMQMKRKGL 90
PKN ++L++ I R+ TM++ +KG
Sbjct: 128 PKNYTDNELEK-ITRRFTMELAKKGF 152
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 35.8 bits (81), Expect = 0.009, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 13 EAIKNIRTQNTLSHLP--------QDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVIS 64
E I+ R Q++ P DV+V+E+K+ L+ + + + K + I+
Sbjct: 77 EVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKIN 136
Query: 65 PKNTRVSDLKRTIERQITMQMKRKGL 90
PKN ++L++ I R+ TM++ +KG
Sbjct: 137 PKNYTDNELEK-ITRRFTMELAKKGF 161
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
Length = 501
Score = 35.8 bits (81), Expect = 0.009, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 13 EAIKNIRTQNTLSHLP--------QDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVIS 64
E I+ R Q++ P DV+V+E+K+ L+ + + + K + I+
Sbjct: 73 EVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKIN 132
Query: 65 PKNTRVSDLKRTIERQITMQMKRKGL 90
PKN ++L++ I R+ TM++ +KG
Sbjct: 133 PKNYTDNELEK-ITRRFTMELAKKGF 157
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
Length = 501
Score = 35.8 bits (81), Expect = 0.009, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 13 EAIKNIRTQNTLSHLP--------QDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVIS 64
E I+ R Q++ P DV+V+E+K+ L+ + + + K + I+
Sbjct: 73 EVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKIN 132
Query: 65 PKNTRVSDLKRTIERQITMQMKRKGL 90
PKN ++L++ I R+ TM++ +KG
Sbjct: 133 PKNYTDNELEK-ITRRFTMELAKKGF 157
>pdb|2NZT|A Chain A, Crystal Structure Of Human Hexokinase Ii
pdb|2NZT|B Chain B, Crystal Structure Of Human Hexokinase Ii
Length = 902
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 77 IERQITMQMKRKGL------SKQISWRHVWKSYWLS---FDGIKLTNEKSLLSELGIESQ 127
I R I + ++GL S+++ R ++++ +LS D + L +++L LG+ES
Sbjct: 739 IVRNILIDFTKRGLLFRGRISERLKTRGIFETKFLSQIESDCLALLQVRAILQHLGLEST 798
Query: 128 CEITFV 133
C+ + +
Sbjct: 799 CDDSII 804
>pdb|4A34|A Chain A, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|B Chain B, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|C Chain C, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|D Chain D, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|E Chain E, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|F Chain F, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|G Chain G, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|H Chain H, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|I Chain I, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|J Chain J, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|K Chain K, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|L Chain L, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|M Chain M, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|N Chain N, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|O Chain O, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|P Chain P, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|Q Chain Q, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|R Chain R, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|S Chain S, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
pdb|4A34|T Chain T, Crystal Structure Of The Fucose Mutarotase In Complex
With L-Fucose From Streptococcus Pneumoniae
Length = 147
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 24 LSHLPQDVTVEEIKSEMELLHGQSIM 49
L H+P++++ + +K+ ME+ HG I+
Sbjct: 2 LKHIPKNISPDLLKTLMEMGHGDEIV 27
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,671,787
Number of Sequences: 62578
Number of extensions: 124461
Number of successful extensions: 358
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 19
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)