Query psy2972
Match_columns 143
No_of_seqs 103 out of 234
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 22:16:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01793 Fubi Fubi ubiquitin-li 99.7 4E-16 8.8E-21 105.5 8.5 73 48-138 1-73 (74)
2 cd01804 midnolin_N Ubiquitin-l 99.6 1E-15 2.3E-20 105.0 8.9 74 47-138 1-75 (78)
3 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 1.1E-15 2.4E-20 104.4 8.1 70 47-133 1-71 (73)
4 cd01806 Nedd8 Nebb8-like ubiq 99.6 1.7E-15 3.6E-20 101.2 8.6 74 48-138 1-75 (76)
5 cd01802 AN1_N ubiquitin-like d 99.6 1.7E-15 3.6E-20 109.7 9.2 79 43-138 23-102 (103)
6 cd01807 GDX_N ubiquitin-like d 99.6 2.8E-15 6.1E-20 101.2 8.4 72 48-136 1-73 (74)
7 PTZ00044 ubiquitin; Provisiona 99.6 3.3E-15 7.1E-20 100.6 8.6 74 48-138 1-75 (76)
8 cd01803 Ubiquitin Ubiquitin. U 99.6 3.9E-15 8.4E-20 99.4 8.6 74 48-138 1-75 (76)
9 cd01810 ISG15_repeat2 ISG15 ub 99.6 3.3E-15 7.2E-20 101.0 7.7 72 50-138 1-73 (74)
10 cd01792 ISG15_repeat1 ISG15 ub 99.6 1.4E-14 3E-19 99.5 8.5 71 48-135 3-76 (80)
11 cd01797 NIRF_N amino-terminal 99.6 1.2E-14 2.6E-19 100.2 7.8 72 48-136 1-75 (78)
12 cd01805 RAD23_N Ubiquitin-like 99.5 5.1E-14 1.1E-18 94.8 8.5 73 48-135 1-74 (77)
13 cd01808 hPLIC_N Ubiquitin-like 99.5 5E-14 1.1E-18 94.4 7.8 70 48-135 1-71 (71)
14 cd01809 Scythe_N Ubiquitin-lik 99.5 8E-14 1.7E-18 92.2 8.6 71 48-135 1-72 (72)
15 cd01798 parkin_N amino-termina 99.5 4.7E-14 1E-18 94.1 7.5 69 50-135 1-70 (70)
16 PF00240 ubiquitin: Ubiquitin 99.5 1E-13 2.2E-18 91.4 7.0 67 54-137 3-69 (69)
17 cd01794 DC_UbP_C dendritic cel 99.5 1.4E-13 3E-18 93.1 7.3 67 51-134 2-69 (70)
18 cd01763 Sumo Small ubiquitin-r 99.5 4.2E-13 9.1E-18 93.8 9.4 80 42-138 6-86 (87)
19 cd01812 BAG1_N Ubiquitin-like 99.5 4.1E-13 8.8E-18 88.8 8.2 69 48-133 1-69 (71)
20 cd01800 SF3a120_C Ubiquitin-li 99.4 4.2E-13 9E-18 91.3 7.8 70 53-139 4-73 (76)
21 cd01796 DDI1_N DNA damage indu 99.4 6E-13 1.3E-17 89.7 7.3 67 50-132 1-69 (71)
22 cd01790 Herp_N Homocysteine-re 99.4 4.9E-13 1.1E-17 93.2 6.6 72 47-133 1-77 (79)
23 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 1.1E-12 2.4E-17 90.7 5.9 60 63-135 16-75 (75)
24 cd01813 UBP_N UBP ubiquitin pr 99.3 6E-12 1.3E-16 85.9 8.5 69 48-133 1-72 (74)
25 KOG0010|consensus 99.3 1.9E-12 4.2E-17 114.7 7.1 75 47-138 15-89 (493)
26 KOG0005|consensus 99.3 3.2E-12 6.9E-17 85.5 4.7 69 48-133 1-70 (70)
27 KOG0003|consensus 99.3 3.9E-13 8.4E-18 99.1 -0.3 75 48-139 1-76 (128)
28 KOG0004|consensus 99.3 2.2E-12 4.8E-17 99.8 3.6 75 48-139 1-76 (156)
29 cd01799 Hoil1_N Ubiquitin-like 99.3 1.7E-11 3.7E-16 84.1 7.6 68 49-133 2-73 (75)
30 smart00213 UBQ Ubiquitin homol 99.2 6.2E-11 1.3E-15 75.8 7.0 64 48-128 1-64 (64)
31 TIGR00601 rad23 UV excision re 99.1 1.2E-10 2.6E-15 101.1 8.1 74 48-135 1-75 (378)
32 cd01769 UBL Ubiquitin-like dom 99.1 5.7E-10 1.2E-14 72.1 7.4 65 53-134 4-68 (69)
33 PF11976 Rad60-SLD: Ubiquitin- 99.1 6.6E-10 1.4E-14 73.9 6.8 71 48-134 1-72 (72)
34 cd01801 Tsc13_N Ubiquitin-like 98.9 1.9E-09 4.1E-14 73.5 5.2 60 61-134 16-76 (77)
35 cd01795 USP48_C USP ubiquitin- 98.8 7E-09 1.5E-13 75.6 5.9 63 57-135 15-77 (107)
36 cd01814 NTGP5 Ubiquitin-like N 98.8 3.8E-09 8.3E-14 78.2 4.5 80 48-137 5-92 (113)
37 cd01789 Alp11_N Ubiquitin-like 98.8 1.9E-08 4.1E-13 70.0 7.6 71 48-134 2-80 (84)
38 PLN02560 enoyl-CoA reductase 98.8 1.7E-08 3.7E-13 85.5 7.3 70 48-134 1-82 (308)
39 PF14560 Ubiquitin_2: Ubiquiti 98.6 3.1E-07 6.8E-12 63.7 7.4 71 48-134 2-82 (87)
40 KOG0001|consensus 98.5 1.3E-06 2.8E-11 55.4 9.1 72 50-138 2-74 (75)
41 PF13881 Rad60-SLD_2: Ubiquiti 98.5 1.2E-06 2.7E-11 64.4 9.2 81 47-137 2-90 (111)
42 KOG0011|consensus 98.4 7.4E-07 1.6E-11 76.4 6.9 73 48-135 1-74 (340)
43 PF08817 YukD: WXG100 protein 98.1 5.3E-06 1.2E-10 56.8 5.0 75 47-132 2-78 (79)
44 cd00196 UBQ Ubiquitin-like pro 98.1 2.4E-05 5.2E-10 46.4 7.2 63 55-134 6-68 (69)
45 PF11543 UN_NPL4: Nuclear pore 98.1 5.6E-06 1.2E-10 57.5 4.8 74 45-134 2-79 (80)
46 KOG4248|consensus 98.0 1.1E-05 2.4E-10 77.3 5.4 68 50-135 5-73 (1143)
47 cd01788 ElonginB Ubiquitin-lik 97.9 5.2E-05 1.1E-09 56.6 6.8 69 50-135 5-80 (119)
48 cd01811 OASL_repeat1 2'-5' oli 97.2 0.0028 6.1E-08 44.2 7.3 68 48-132 1-73 (80)
49 KOG1769|consensus 97.1 0.0052 1.1E-07 44.7 8.8 76 45-137 18-94 (99)
50 KOG1639|consensus 97.1 0.0014 3.1E-08 55.0 6.1 75 48-134 1-78 (297)
51 PF00789 UBX: UBX domain; Int 96.4 0.032 7E-07 37.6 8.0 75 44-133 3-81 (82)
52 COG5417 Uncharacterized small 96.4 0.019 4.1E-07 40.1 6.6 72 47-131 4-79 (81)
53 KOG0006|consensus 96.2 0.0076 1.7E-07 52.4 4.7 58 59-133 16-73 (446)
54 PF11470 TUG-UBL1: GLUT4 regul 96.1 0.03 6.5E-07 37.6 6.2 63 53-132 3-65 (65)
55 PF13019 Telomere_Sde2: Telome 95.9 0.036 7.7E-07 43.6 7.0 77 48-139 1-88 (162)
56 PF10302 DUF2407: DUF2407 ubiq 95.6 0.03 6.5E-07 40.3 5.0 49 59-121 14-63 (97)
57 KOG1872|consensus 95.5 0.028 6.1E-07 50.5 5.5 69 48-133 4-73 (473)
58 cd01770 p47_UBX p47-like ubiqu 95.4 0.076 1.7E-06 36.5 6.4 68 47-129 4-74 (79)
59 PF15044 CLU_N: Mitochondrial 95.2 0.04 8.7E-07 37.8 4.4 55 65-134 2-57 (76)
60 KOG4495|consensus 95.0 0.033 7.2E-07 40.7 3.8 62 48-125 3-65 (110)
61 COG5227 SMT3 Ubiquitin-like pr 93.9 0.2 4.4E-06 36.3 5.6 69 47-132 24-93 (103)
62 KOG3493|consensus 93.8 0.03 6.6E-07 38.2 1.2 67 49-132 3-70 (73)
63 PF09379 FERM_N: FERM N-termin 92.9 0.66 1.4E-05 30.7 6.7 67 53-134 3-76 (80)
64 cd01767 UBX UBX (ubiquitin reg 92.3 1.6 3.5E-05 29.1 8.0 67 48-132 3-74 (77)
65 smart00166 UBX Domain present 92.3 1.6 3.5E-05 29.4 8.0 73 45-133 2-79 (80)
66 TIGR02958 sec_mycoba_snm4 secr 91.9 0.92 2E-05 40.5 8.2 79 48-137 3-82 (452)
67 cd01772 SAKS1_UBX SAKS1-like U 91.7 2 4.3E-05 29.2 8.0 72 47-133 4-78 (79)
68 PF14453 ThiS-like: ThiS-like 91.5 0.79 1.7E-05 30.2 5.5 53 53-135 4-56 (57)
69 smart00295 B41 Band 4.1 homolo 90.9 3.3 7.1E-05 31.4 9.3 76 46-137 2-85 (207)
70 PLN02799 Molybdopterin synthas 90.0 2.2 4.7E-05 28.7 6.9 62 57-138 19-81 (82)
71 cd01774 Faf1_like2_UBX Faf1 ik 90.0 4.4 9.5E-05 28.1 8.5 70 46-132 3-82 (85)
72 PF14836 Ubiquitin_3: Ubiquiti 89.9 2.3 5.1E-05 30.2 7.2 68 56-136 13-81 (88)
73 TIGR01687 moaD_arch MoaD famil 89.8 2.4 5.1E-05 28.8 7.0 68 57-138 16-87 (88)
74 cd00754 MoaD Ubiquitin domain 88.1 3 6.6E-05 27.4 6.4 63 58-138 17-79 (80)
75 PF08337 Plexin_cytopl: Plexin 87.7 2.1 4.5E-05 39.4 7.1 90 46-136 188-290 (539)
76 PF00076 RRM_1: RNA recognitio 86.6 2.9 6.4E-05 25.8 5.4 56 23-80 2-59 (70)
77 PF10209 DUF2340: Uncharacteri 86.5 2.2 4.8E-05 32.2 5.5 63 66-133 25-106 (122)
78 cd01768 RA RA (Ras-associating 85.9 5.8 0.00013 26.6 7.0 67 56-136 12-86 (87)
79 TIGR01682 moaD molybdopterin c 85.9 3.8 8.2E-05 27.4 6.0 61 58-138 17-79 (80)
80 KOG3206|consensus 85.5 1.6 3.4E-05 36.0 4.6 72 48-135 2-81 (234)
81 PF00788 RA: Ras association ( 85.2 4.9 0.00011 26.8 6.3 74 50-137 5-91 (93)
82 smart00666 PB1 PB1 domain. Pho 82.6 4.8 0.0001 26.6 5.4 34 48-82 2-35 (81)
83 PF02597 ThiS: ThiS family; I 82.4 4.4 9.6E-05 26.3 5.1 64 58-138 13-76 (77)
84 cd06407 PB1_NLP A PB1 domain i 82.0 8.3 0.00018 26.7 6.5 35 48-83 1-35 (82)
85 KOG3391|consensus 80.5 1.4 3.1E-05 34.0 2.4 29 108-136 109-137 (151)
86 PRK08364 sulfur carrier protei 79.5 9 0.0002 25.3 5.8 62 51-138 6-69 (70)
87 PRK08053 sulfur carrier protei 78.9 7.1 0.00015 25.4 5.1 62 53-138 4-65 (66)
88 COG3760 Uncharacterized conser 77.5 28 0.0006 27.4 8.7 101 1-132 2-104 (164)
89 cd01775 CYR1_RA Ubiquitin doma 77.1 5.9 0.00013 28.8 4.6 35 48-83 3-38 (97)
90 KOG2086|consensus 76.4 6.8 0.00015 34.7 5.6 66 48-128 306-374 (380)
91 PF12053 DUF3534: Domain of un 75.0 30 0.00065 26.7 8.3 75 48-131 1-76 (145)
92 PF14732 UAE_UbL: Ubiquitin/SU 74.7 3.7 8E-05 28.7 2.9 59 65-134 6-68 (87)
93 PRK13552 frdB fumarate reducta 74.1 7.2 0.00016 31.9 5.0 35 45-80 2-46 (239)
94 PLN02560 enoyl-CoA reductase 72.8 1.6 3.4E-05 37.3 0.8 69 26-99 19-92 (308)
95 KOG0013|consensus 72.7 7.3 0.00016 32.2 4.6 65 53-134 153-217 (231)
96 PF11834 DUF3354: Domain of un 71.0 2.9 6.3E-05 28.4 1.6 43 68-133 26-69 (69)
97 TIGR01683 thiS thiamine biosyn 69.4 16 0.00034 23.5 4.9 60 54-137 3-62 (64)
98 PF11069 DUF2870: Protein of u 69.4 6.8 0.00015 28.5 3.4 34 104-139 3-36 (98)
99 COG2104 ThiS Sulfur transfer p 68.5 29 0.00063 23.3 6.1 67 48-138 1-67 (68)
100 KOG0012|consensus 67.6 11 0.00024 33.3 4.9 65 55-135 11-76 (380)
101 KOG4583|consensus 67.4 2.5 5.3E-05 37.2 0.9 61 47-122 9-72 (391)
102 cd00565 ThiS ThiaminS ubiquiti 66.8 15 0.00032 23.7 4.3 62 53-138 3-64 (65)
103 smart00314 RA Ras association 66.1 19 0.0004 24.3 4.9 67 56-137 15-89 (90)
104 PF06487 SAP18: Sin3 associate 65.7 35 0.00076 25.4 6.7 72 59-133 39-119 (120)
105 PRK06944 sulfur carrier protei 64.9 28 0.00062 22.0 5.4 61 53-138 4-64 (65)
106 KOG4146|consensus 64.4 32 0.00069 25.0 6.0 72 59-139 27-101 (101)
107 TIGR01584 citF citrate lyase, 63.5 5.2 0.00011 36.5 2.2 31 108-138 23-54 (492)
108 PRK06437 hypothetical protein; 63.3 31 0.00067 22.6 5.4 57 56-138 10-66 (67)
109 PF06622 SepQ: SepQ protein; 62.5 36 0.00078 28.9 6.8 92 29-140 105-197 (305)
110 cd05992 PB1 The PB1 domain is 62.1 20 0.00044 23.3 4.4 34 49-83 2-36 (81)
111 PRK07440 hypothetical protein; 60.8 38 0.00083 22.4 5.6 66 47-138 4-69 (70)
112 PF13180 PDZ_2: PDZ domain; PD 60.5 25 0.00054 23.1 4.7 33 31-63 47-80 (82)
113 PRK11130 moaD molybdopterin sy 60.0 46 0.00099 22.3 6.0 57 66-138 24-80 (81)
114 PRK06083 sulfur carrier protei 59.3 47 0.001 23.0 6.0 68 45-136 14-81 (84)
115 TIGR03221 muco_delta muconolac 59.3 20 0.00044 25.6 4.2 38 58-102 5-45 (90)
116 cd06408 PB1_NoxR The PB1 domai 59.1 32 0.00068 24.3 5.1 55 47-108 2-56 (86)
117 cd01771 Faf1_UBX Faf1 UBX doma 58.9 55 0.0012 22.3 7.6 70 47-133 4-78 (80)
118 smart00144 PI3K_rbd PI3-kinase 58.2 66 0.0014 23.0 8.1 80 46-137 16-106 (108)
119 PF09269 DUF1967: Domain of un 57.8 6.1 0.00013 26.4 1.3 17 116-132 46-62 (69)
120 PRK06488 sulfur carrier protei 57.5 34 0.00074 21.9 4.8 62 52-138 3-64 (65)
121 smart00362 RRM_2 RNA recogniti 57.2 38 0.00081 19.9 5.2 52 23-79 3-58 (72)
122 cd01789 Alp11_N Ubiquitin-like 57.2 17 0.00036 24.9 3.4 32 27-58 19-54 (84)
123 PF14259 RRM_6: RNA recognitio 57.1 31 0.00067 21.5 4.5 56 23-80 2-59 (70)
124 PF02991 Atg8: Autophagy prote 56.1 72 0.0016 23.1 6.7 66 40-121 9-81 (104)
125 TIGR03595 Obg_CgtA_exten Obg f 55.8 8.3 0.00018 25.8 1.7 17 116-132 46-62 (69)
126 PF10790 DUF2604: Protein of U 55.8 11 0.00023 25.9 2.2 27 108-135 45-71 (76)
127 PF00564 PB1: PB1 domain; Int 55.7 55 0.0012 21.4 6.6 35 48-83 2-37 (84)
128 cd01764 Urm1 Urm1-like ubuitin 54.5 9.3 0.0002 26.9 1.8 59 66-138 27-93 (94)
129 cd01773 Faf1_like1_UBX Faf1 ik 54.1 72 0.0016 22.2 8.7 74 45-135 3-81 (82)
130 COG4829 CatC1 Muconolactone de 54.1 15 0.00033 26.4 2.9 36 59-101 7-45 (98)
131 PF04126 Cyclophil_like: Cyclo 53.2 15 0.00033 26.9 2.9 29 48-77 1-29 (120)
132 PF14533 USP7_C2: Ubiquitin-sp 52.6 18 0.0004 28.8 3.5 42 42-84 15-60 (213)
133 PRK05863 sulfur carrier protei 52.4 59 0.0013 21.0 5.3 59 53-136 4-62 (65)
134 KOG0071|consensus 51.6 18 0.00039 28.6 3.1 39 6-44 98-147 (180)
135 PRK08640 sdhB succinate dehydr 51.1 28 0.00061 28.7 4.4 35 45-80 3-45 (249)
136 PF10407 Cytokin_check_N: Cdc1 50.5 29 0.00063 23.8 3.7 28 58-86 4-32 (73)
137 TIGR03112 6_pyr_pter_rel 6-pyr 49.6 78 0.0017 23.0 6.1 56 3-59 42-110 (113)
138 PF07929 PRiA4_ORF3: Plasmid p 48.7 75 0.0016 24.2 6.3 37 46-83 3-43 (179)
139 KOG4147|consensus 47.3 6.7 0.00015 29.4 0.2 22 111-132 89-110 (127)
140 cd06396 PB1_NBR1 The PB1 domai 44.0 69 0.0015 22.4 4.8 35 49-84 2-38 (81)
141 KOG4410|consensus 44.0 27 0.00058 30.5 3.3 39 65-110 339-377 (396)
142 PF01524 Gemini_V1: Geminiviru 43.4 12 0.00026 26.2 0.9 26 21-48 3-28 (78)
143 PF08825 E2_bind: E2 binding d 42.1 17 0.00037 25.3 1.5 64 61-134 1-70 (84)
144 PRK07696 sulfur carrier protei 41.8 80 0.0017 20.6 4.7 62 53-138 4-66 (67)
145 cd06396 PB1_NBR1 The PB1 domai 39.2 90 0.002 21.8 4.8 50 26-80 15-67 (81)
146 PF02192 PI3K_p85B: PI3-kinase 39.1 39 0.00085 23.3 3.0 23 59-82 2-24 (78)
147 PF02426 MIase: Muconolactone 38.6 69 0.0015 22.7 4.2 37 58-101 6-45 (91)
148 COG1977 MoaD Molybdopterin con 38.2 76 0.0017 21.6 4.3 59 65-138 25-83 (84)
149 PF02831 gpW: gpW; InterPro: 38.2 1.1E+02 0.0025 20.5 5.1 39 37-80 12-50 (68)
150 cd06405 PB1_Mekk2_3 The PB1 do 38.2 1.4E+02 0.0029 21.0 5.5 49 26-80 15-63 (79)
151 cd00986 PDZ_LON_protease PDZ d 38.1 1E+02 0.0022 19.9 4.8 32 32-63 41-73 (79)
152 PRK07570 succinate dehydrogena 37.9 73 0.0016 26.3 4.9 45 48-98 3-56 (250)
153 PF02824 TGS: TGS domain; Int 37.0 1.1E+02 0.0024 19.4 4.9 58 50-133 1-59 (60)
154 cd06406 PB1_P67 A PB1 domain i 35.4 1.3E+02 0.0027 21.1 5.0 34 49-84 4-37 (80)
155 PRK05659 sulfur carrier protei 34.8 1.2E+02 0.0026 19.1 5.7 60 53-136 4-63 (66)
156 PF06918 DUF1280: Protein of u 33.3 1.6E+02 0.0035 24.0 6.2 70 7-82 69-143 (224)
157 PF00794 PI3K_rbd: PI3-kinase 32.9 1.3E+02 0.0029 20.9 5.1 81 44-136 13-103 (106)
158 cd00989 PDZ_metalloprotease PD 32.2 1.3E+02 0.0029 18.9 4.9 32 32-63 46-77 (79)
159 smart00360 RRM RNA recognition 32.1 1.1E+02 0.0023 17.7 5.4 52 24-79 1-57 (71)
160 PF00276 Ribosomal_L23: Riboso 31.1 1E+02 0.0022 21.4 4.1 26 57-83 21-46 (91)
161 smart00143 PI3K_p85B PI3-kinas 30.9 66 0.0014 22.3 3.0 22 59-81 2-23 (78)
162 cd06398 PB1_Joka2 The PB1 doma 30.7 1.9E+02 0.0042 20.2 6.6 35 49-83 2-40 (91)
163 PF08455 SNF2_assoc: Bacterial 30.5 1.1E+02 0.0024 26.0 5.1 102 3-128 216-326 (377)
164 cd00590 RRM RRM (RNA recogniti 30.4 1.2E+02 0.0025 17.7 6.8 53 23-80 3-60 (74)
165 cd01611 GABARAP Ubiquitin doma 30.3 2.2E+02 0.0047 20.7 7.5 70 42-127 19-99 (112)
166 PLN03213 repressor of silencin 29.4 2E+02 0.0043 27.1 6.6 55 24-80 15-70 (759)
167 CHL00030 rpl23 ribosomal prote 29.4 96 0.0021 22.1 3.7 27 56-83 19-45 (93)
168 PF03990 DUF348: Domain of unk 29.2 1E+02 0.0022 18.3 3.4 24 50-75 2-25 (43)
169 COG3051 CitF Citrate lyase, al 29.1 36 0.00078 30.7 1.8 24 116-139 54-77 (513)
170 PF04023 FeoA: FeoA domain; I 29.1 47 0.001 21.3 2.0 20 116-135 25-44 (74)
171 TIGR03636 L23_arch archaeal ri 28.9 1.1E+02 0.0024 21.0 3.9 26 57-83 15-40 (77)
172 PF12754 Blt1: Cell-cycle cont 28.8 19 0.0004 31.2 0.0 83 47-134 78-176 (309)
173 PF06543 Lac_bphage_repr: Lact 28.8 19 0.00041 23.0 0.0 20 93-117 17-36 (49)
174 cd01787 GRB7_RA RA (RAS-associ 28.6 1.8E+02 0.004 20.5 5.0 34 49-83 4-38 (85)
175 TIGR01659 sex-lethal sex-letha 28.5 1.6E+02 0.0036 25.3 5.7 54 23-80 197-255 (346)
176 smart00666 PB1 PB1 domain. Pho 28.0 1.7E+02 0.0038 18.9 6.0 49 26-80 16-68 (81)
177 PF08900 DUF1845: Domain of un 27.9 19 0.00042 29.1 -0.1 35 4-38 67-103 (217)
178 PF14533 USP7_C2: Ubiquitin-sp 27.7 2.1E+02 0.0046 22.7 6.0 38 47-85 115-160 (213)
179 COG0089 RplW Ribosomal protein 27.6 1.1E+02 0.0024 22.0 3.8 28 56-84 21-48 (94)
180 TIGR03761 ICE_PFL4669 integrat 27.6 33 0.00071 28.1 1.2 35 4-38 65-101 (216)
181 PRK05738 rplW 50S ribosomal pr 27.4 1.1E+02 0.0023 21.5 3.7 27 56-83 20-46 (92)
182 PF01376 Enterotoxin_b: Heat-l 27.2 92 0.002 22.3 3.3 43 38-81 26-69 (102)
183 TIGR01659 sex-lethal sex-letha 27.2 1.6E+02 0.0035 25.4 5.4 53 23-79 111-168 (346)
184 PF02301 HORMA: HORMA domain; 26.9 57 0.0012 25.2 2.5 31 2-32 127-158 (208)
185 PRK12765 flagellar capping pro 26.9 1.3E+02 0.0028 28.0 5.1 34 46-80 131-164 (595)
186 PF14268 YoaP: YoaP-like 26.7 45 0.00097 20.7 1.4 15 99-113 19-33 (44)
187 TIGR00039 6PTHBS 6-pyruvoyl te 26.4 1.1E+02 0.0024 22.2 3.8 38 3-40 50-90 (124)
188 KOG2689|consensus 26.1 1.3E+02 0.0029 25.8 4.6 71 48-132 211-284 (290)
189 PRK14548 50S ribosomal protein 25.9 1.3E+02 0.0028 21.0 3.9 26 57-83 22-47 (84)
190 PLN00129 succinate dehydrogena 25.8 1.5E+02 0.0032 25.1 4.8 37 43-80 39-85 (276)
191 PF00025 Arf: ADP-ribosylation 25.1 1.4E+02 0.0031 22.3 4.3 37 8-44 97-144 (175)
192 KOG0070|consensus 24.8 1.3E+02 0.0028 24.1 4.1 38 7-44 99-147 (181)
193 COG5131 URM1 Ubiquitin-like pr 24.5 1.2E+02 0.0026 21.9 3.5 35 100-139 60-96 (96)
194 TIGR02542 B_forsyth_147 Bacter 24.3 1.3E+02 0.0028 22.9 3.8 69 30-108 47-124 (145)
195 PRK09908 xanthine dehydrogenas 24.0 1.4E+02 0.0031 23.3 4.2 32 44-76 3-34 (159)
196 PF01568 Molydop_binding: Moly 23.9 52 0.0011 22.5 1.5 19 115-133 35-53 (110)
197 TIGR02159 PA_CoA_Oxy4 phenylac 23.6 1.2E+02 0.0026 23.1 3.6 52 68-126 39-90 (146)
198 PF12949 HeH: HeH/LEM domain; 23.3 62 0.0013 19.1 1.5 16 65-80 1-16 (35)
199 PLN03134 glycine-rich RNA-bind 23.3 2.5E+02 0.0054 20.9 5.3 53 24-80 39-96 (144)
200 cd06410 PB1_UP2 Uncharacterize 23.2 2E+02 0.0043 20.4 4.5 57 23-81 25-83 (97)
201 cd02790 MopB_CT_Formate-Dh_H F 23.1 66 0.0014 22.1 2.0 20 115-134 40-59 (116)
202 smart00455 RBD Raf-like Ras-bi 22.9 2.3E+02 0.0051 18.7 4.7 32 54-86 7-38 (70)
203 cd06409 PB1_MUG70 The MUG70 pr 22.7 1.7E+02 0.0038 20.5 4.0 31 54-85 8-38 (86)
204 PF04014 Antitoxin-MazE: Antid 22.6 1E+02 0.0022 18.4 2.6 21 116-136 13-33 (47)
205 COG4925 Uncharacterized conser 22.5 1.5E+02 0.0034 23.1 4.0 38 39-77 42-80 (166)
206 PRK13817 ribosome-binding fact 22.0 98 0.0021 22.7 2.8 16 90-105 76-92 (119)
207 cd06404 PB1_aPKC PB1 domain is 21.8 3E+02 0.0064 19.4 5.1 73 49-128 2-74 (83)
208 PF03931 Skp1_POZ: Skp1 family 21.7 95 0.0021 19.7 2.4 16 48-63 1-17 (62)
209 TIGR03367 queuosine_QueD queuo 21.7 2.2E+02 0.0047 19.6 4.4 37 3-40 48-86 (92)
210 KOG2013|consensus 21.7 2E+02 0.0044 26.9 5.2 65 60-134 446-510 (603)
211 cd00470 PTPS 6-pyruvoyl tetrah 21.4 3.5E+02 0.0075 20.1 7.2 38 3-40 62-104 (135)
212 PF08783 DWNN: DWNN domain; I 21.4 99 0.0021 21.1 2.5 24 58-81 11-34 (74)
213 cd00991 PDZ_archaeal_metallopr 21.3 2.4E+02 0.0053 18.2 4.8 32 32-63 44-76 (79)
214 cd00508 MopB_CT_Fdh-Nap-like T 20.4 74 0.0016 21.9 1.8 20 115-134 40-59 (120)
215 KOG0145|consensus 20.2 1.6E+02 0.0035 25.5 4.0 57 23-80 45-103 (360)
216 PF04967 HTH_10: HTH DNA bindi 20.1 85 0.0019 20.0 1.9 17 26-42 19-35 (53)
217 cd02788 MopB_CT_NDH-1_NuoG2-N7 20.0 85 0.0018 21.4 2.0 19 115-133 34-52 (96)
No 1
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.67 E-value=4e-16 Score=105.49 Aligned_cols=73 Identities=21% Similarity=0.416 Sum_probs=64.3
Q ss_pred EEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCC
Q psy2972 48 IMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQ 127 (143)
Q Consensus 48 m~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g 127 (143)
|+|+||. ++.+++.| ++++||++||+.|++. +|++. .+++|+|+|+.| +|+.+|++|||++|
T Consensus 1 mqi~vk~-~~~~~l~v-~~~~tV~~lK~~i~~~-------~gip~--------~~q~Li~~Gk~L-~D~~tL~~~~i~~~ 62 (74)
T cd01793 1 MQLFVRA-QNTHTLEV-TGQETVSDIKAHVAGL-------EGIDV--------EDQVLLLAGVPL-EDDATLGQCGVEEL 62 (74)
T ss_pred CEEEEEC-CCEEEEEE-CCcCcHHHHHHHHHhh-------hCCCH--------HHEEEEECCeEC-CCCCCHHHcCCCCC
Confidence 7899955 47899999 8999999999999986 45433 588999999999 57899999999999
Q ss_pred CEEEEEeeecc
Q psy2972 128 CEITFVKRLKD 138 (143)
Q Consensus 128 ~tl~fv~rlr~ 138 (143)
++||++.|++|
T Consensus 63 ~tl~l~~~l~G 73 (74)
T cd01793 63 CTLEVAGRLLG 73 (74)
T ss_pred CEEEEEEecCC
Confidence 99999999997
No 2
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.65 E-value=1e-15 Score=105.03 Aligned_cols=74 Identities=20% Similarity=0.407 Sum_probs=64.9
Q ss_pred cEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCC
Q psy2972 47 SIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIE 125 (143)
Q Consensus 47 am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~ 125 (143)
.|+|+| ...|+.++++| ++++||.+||+.|++++.+++. +++|+|.|+.|. |+ +|.+|||+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v-~~~~TV~~LK~~I~~~~~~~~~---------------~qrL~~~Gk~L~-d~-~L~~~gi~ 62 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSV-PPDETVEGLKKRISQRLKVPKE---------------RLALLHRETRLS-SG-KLQDLGLG 62 (78)
T ss_pred CeEEEEEECCCCEEEEEE-CCcCHHHHHHHHHHHHhCCChH---------------HEEEEECCcCCC-CC-cHHHcCCC
Confidence 499999 88899999999 9999999999999997544333 669999999995 55 89999999
Q ss_pred CCCEEEEEeeecc
Q psy2972 126 SQCEITFVKRLKD 138 (143)
Q Consensus 126 ~g~tl~fv~rlr~ 138 (143)
+|++||++..++|
T Consensus 63 ~~~~i~l~~~~~~ 75 (78)
T cd01804 63 DGSKLTLVPTVEA 75 (78)
T ss_pred CCCEEEEEeeccc
Confidence 9999999998875
No 3
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.64 E-value=1.1e-15 Score=104.41 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=61.2
Q ss_pred cEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCC
Q psy2972 47 SIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIE 125 (143)
Q Consensus 47 am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~ 125 (143)
.|+|+| .+.|+.+.+.| ++++||.+||++|++++.+++ .+++|+|+|+.| +|+.+|.+|||+
T Consensus 1 ~~~i~vkt~~Gk~~~~~v-~~~~TV~~LK~~I~~~~~~~~---------------~~qrLi~~Gk~L-~D~~tL~~ygi~ 63 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKC-NPDDTIGDLKKLIAAQTGTRP---------------EKIVLKKWYTIF-KDHISLGDYEIH 63 (73)
T ss_pred CEEEEEECCCCCEEEEEe-CCCCcHHHHHHHHHHHhCCCh---------------HHEEEEeCCcCC-CCCCCHHHcCCC
Confidence 489999 88899999999 899999999999999754333 467999999988 578899999999
Q ss_pred CCCEEEEE
Q psy2972 126 SQCEITFV 133 (143)
Q Consensus 126 ~g~tl~fv 133 (143)
+|++||+-
T Consensus 64 ~~stv~l~ 71 (73)
T cd01791 64 DGMNLELY 71 (73)
T ss_pred CCCEEEEE
Confidence 99999984
No 4
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.63 E-value=1.7e-15 Score=101.24 Aligned_cols=74 Identities=16% Similarity=0.355 Sum_probs=65.8
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ..+|+.+.+.| +++.||.+||++|+..+ |.+. .+++|+|+|+.|. |+.+|.+|||++
T Consensus 1 m~i~v~~~~g~~~~~~v-~~~~tv~~lK~~i~~~~-------g~~~--------~~qrL~~~g~~L~-d~~tl~~~~i~~ 63 (76)
T cd01806 1 MLIKVKTLTGKEIEIDI-EPTDKVERIKERVEEKE-------GIPP--------QQQRLIYSGKQMN-DDKTAADYKLEG 63 (76)
T ss_pred CEEEEEeCCCCEEEEEE-CCCCCHHHHHHHHhHhh-------CCCh--------hhEEEEECCeEcc-CCCCHHHcCCCC
Confidence 78999 88999999999 89999999999999964 3322 4679999999994 779999999999
Q ss_pred CCEEEEEeeecc
Q psy2972 127 QCEITFVKRLKD 138 (143)
Q Consensus 127 g~tl~fv~rlr~ 138 (143)
|++||++.++||
T Consensus 64 g~~i~l~~~~~g 75 (76)
T cd01806 64 GSVLHLVLALRG 75 (76)
T ss_pred CCEEEEEEEccC
Confidence 999999999987
No 5
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.63 E-value=1.7e-15 Score=109.75 Aligned_cols=79 Identities=16% Similarity=0.331 Sum_probs=70.4
Q ss_pred ccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhh
Q psy2972 43 LHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSE 121 (143)
Q Consensus 43 ~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~d 121 (143)
.....|+|+| .+.|+.+.+.| .+++||.+||+.|++. +|++. .+|+|+|+|+.| +|+.+|++
T Consensus 23 ~~~~~M~I~Vk~l~G~~~~leV-~~~~TV~~lK~kI~~~-------~gip~--------~~QrLi~~Gk~L-~D~~tL~d 85 (103)
T cd01802 23 PFYDTMELFIETLTGTCFELRV-SPFETVISVKAKIQRL-------EGIPV--------AQQHLIWNNMEL-EDEYCLND 85 (103)
T ss_pred ccCCCEEEEEEcCCCCEEEEEe-CCCCcHHHHHHHHHHH-------hCCCh--------HHEEEEECCEEC-CCCCcHHH
Confidence 3556899999 88999999999 8999999999999985 45433 578999999999 57899999
Q ss_pred hCCCCCCEEEEEeeecc
Q psy2972 122 LGIESQCEITFVKRLKD 138 (143)
Q Consensus 122 yGI~~g~tl~fv~rlr~ 138 (143)
|||++|++||++.++||
T Consensus 86 y~I~~~stL~l~~~l~G 102 (103)
T cd01802 86 YNISEGCTLKLVLAMRG 102 (103)
T ss_pred cCCCCCCEEEEEEecCC
Confidence 99999999999999998
No 6
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.62 E-value=2.8e-15 Score=101.21 Aligned_cols=72 Identities=18% Similarity=0.374 Sum_probs=63.7
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ..+|+.+++.| .+++||.+||+.|++++ |++. .+|+|+|+|+.| +|+.+|.+|||++
T Consensus 1 m~i~vk~~~G~~~~l~v-~~~~tV~~lK~~i~~~~-------gi~~--------~~q~L~~~G~~L-~d~~~L~~~~i~~ 63 (74)
T cd01807 1 MFLTVKLLQGRECSLQV-SEKESVSTLKKLVSEHL-------NVPE--------EQQRLLFKGKAL-ADDKRLSDYSIGP 63 (74)
T ss_pred CEEEEEeCCCCEEEEEE-CCCCcHHHHHHHHHHHH-------CCCH--------HHeEEEECCEEC-CCCCCHHHCCCCC
Confidence 79999 88999999999 88999999999999964 4433 478999999999 4789999999999
Q ss_pred CCEEEEEeee
Q psy2972 127 QCEITFVKRL 136 (143)
Q Consensus 127 g~tl~fv~rl 136 (143)
|++||++.|.
T Consensus 64 ~~~l~l~~~~ 73 (74)
T cd01807 64 NAKLNLVVRP 73 (74)
T ss_pred CCEEEEEEcC
Confidence 9999999763
No 7
>PTZ00044 ubiquitin; Provisional
Probab=99.62 E-value=3.3e-15 Score=100.64 Aligned_cols=74 Identities=19% Similarity=0.332 Sum_probs=66.6
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ..+|+.+.+.| .++.||.+||+.|++. .|++. .+++|+|+|+.|. |+.+|.+|||++
T Consensus 1 m~i~vk~~~G~~~~l~v-~~~~tv~~lK~~i~~~-------~gi~~--------~~q~L~~~g~~L~-d~~~l~~~~i~~ 63 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNF-EPDNTVQQVKMALQEK-------EGIDV--------KQIRLIYSGKQMS-DDLKLSDYKVVP 63 (76)
T ss_pred CEEEEEeCCCCEEEEEE-CCCCcHHHHHHHHHHH-------HCCCH--------HHeEEEECCEEcc-CCCcHHHcCCCC
Confidence 78999 88999999999 8889999999999996 34322 5789999999995 889999999999
Q ss_pred CCEEEEEeeecc
Q psy2972 127 QCEITFVKRLKD 138 (143)
Q Consensus 127 g~tl~fv~rlr~ 138 (143)
|++||++.+++|
T Consensus 64 ~~~i~l~~~~~g 75 (76)
T PTZ00044 64 GSTIHMVLQLRG 75 (76)
T ss_pred CCEEEEEEEccC
Confidence 999999999987
No 8
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.61 E-value=3.9e-15 Score=99.44 Aligned_cols=74 Identities=18% Similarity=0.336 Sum_probs=65.6
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ..+|+.+.+.| ++++||.+||+.|++.+...+ .+++|+|+|+.| .|+.+|.+|||++
T Consensus 1 m~i~v~~~~g~~~~~~v-~~~~tV~~lK~~i~~~~g~~~---------------~~q~L~~~g~~L-~d~~~L~~~~i~~ 63 (76)
T cd01803 1 MQIFVKTLTGKTITLEV-EPSDTIENVKAKIQDKEGIPP---------------DQQRLIFAGKQL-EDGRTLSDYNIQK 63 (76)
T ss_pred CEEEEEcCCCCEEEEEE-CCcCcHHHHHHHHHHHhCCCH---------------HHeEEEECCEEC-CCCCcHHHcCCCC
Confidence 78999 88899999999 889999999999999753222 467999999999 4789999999999
Q ss_pred CCEEEEEeeecc
Q psy2972 127 QCEITFVKRLKD 138 (143)
Q Consensus 127 g~tl~fv~rlr~ 138 (143)
|++||++.+++|
T Consensus 64 ~~~i~l~~~~~g 75 (76)
T cd01803 64 ESTLHLVLRLRG 75 (76)
T ss_pred CCEEEEEEEccC
Confidence 999999999987
No 9
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.60 E-value=3.3e-15 Score=101.00 Aligned_cols=72 Identities=19% Similarity=0.466 Sum_probs=63.6
Q ss_pred EEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCC
Q psy2972 50 CCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQC 128 (143)
Q Consensus 50 l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~ 128 (143)
|+| ...|+.+++.| .+++||++||+.|++. +|++. .+|+|+|+|+.|. |+.+|.+|||++|+
T Consensus 1 i~vk~~~g~~~~l~v-~~~~tV~~lK~~I~~~-------~gi~~--------~~q~L~~~G~~L~-D~~tL~~~~i~~~~ 63 (74)
T cd01810 1 ILVRNDKGRSSIYEV-QLTQTVATLKQQVSQR-------ERVQA--------DQFWLSFEGRPME-DEHPLGEYGLKPGC 63 (74)
T ss_pred CEEECCCCCEEEEEE-CCcChHHHHHHHHHHH-------hCCCH--------HHeEEEECCEECC-CCCCHHHcCCCCCC
Confidence 578 78899999999 8999999999999986 34433 4789999999995 77999999999999
Q ss_pred EEEEEeeecc
Q psy2972 129 EITFVKRLKD 138 (143)
Q Consensus 129 tl~fv~rlr~ 138 (143)
+|++..+++|
T Consensus 64 tl~l~~~l~g 73 (74)
T cd01810 64 TVFMNLRLRG 73 (74)
T ss_pred EEEEEEEccC
Confidence 9999999987
No 10
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.57 E-value=1.4e-14 Score=99.54 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=62.3
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEE--eeCCcccccccchhhhhCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWL--SFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~L--if~gkkL~~d~~tL~dyGI 124 (143)
|+|+| ...|+.+.+.| ++++||.+||++|++++.+++ .+|+| +|+|+.|. |+.+|.+|||
T Consensus 3 ~~i~Vk~~~G~~~~~~v-~~~~TV~~lK~~I~~~~~i~~---------------~~qrL~~~~~G~~L~-D~~tL~~~gi 65 (80)
T cd01792 3 WDLKVKMLGGNEFLVSL-RDSMTVSELKQQIAQKIGVPA---------------FQQRLAHLDSREVLQ-DGVPLVSQGL 65 (80)
T ss_pred eEEEEEeCCCCEEEEEc-CCCCcHHHHHHHHHHHhCCCH---------------HHEEEEeccCCCCCC-CCCCHHHcCC
Confidence 89999 88899999999 889999999999999754333 36688 89999994 7789999999
Q ss_pred CCCCEEEEEee
Q psy2972 125 ESQCEITFVKR 135 (143)
Q Consensus 125 ~~g~tl~fv~r 135 (143)
++|++|+++.+
T Consensus 66 ~~gs~l~l~~~ 76 (80)
T cd01792 66 GPGSTVLLVVQ 76 (80)
T ss_pred CCCCEEEEEEE
Confidence 99999999887
No 11
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.57 E-value=1.2e-14 Score=100.17 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=63.0
Q ss_pred EEEEE-EeCCce-EEEE-ecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 48 IMCCI-QADNKK-FDIV-ISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 48 m~l~V-k~~g~~-~~V~-V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
|+|+| ..+|+. +.+. + ++++||.+||+.|++. +|++. .+|+|+|+|+.| +|+.+|++|||
T Consensus 1 M~I~vk~~~G~~~~~l~~v-~~~~TV~~lK~~i~~~-------~gi~~--------~~QrLi~~Gk~L-~D~~tL~~y~i 63 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSL-SRLTKVEELREKIQEL-------FNVEP--------ECQRLFYRGKQM-EDGHTLFDYNV 63 (78)
T ss_pred CEEEEEcCCCCEEEEeecc-CCcCcHHHHHHHHHHH-------hCCCH--------HHeEEEeCCEEC-CCCCCHHHcCC
Confidence 89999 888987 7884 7 8889999999999985 44432 588999999999 58999999999
Q ss_pred CCCCEEEEEeee
Q psy2972 125 ESQCEITFVKRL 136 (143)
Q Consensus 125 ~~g~tl~fv~rl 136 (143)
++|++||++.|+
T Consensus 64 ~~~~~i~l~~~~ 75 (78)
T cd01797 64 GLNDIIQLLVRQ 75 (78)
T ss_pred CCCCEEEEEEec
Confidence 999999999886
No 12
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.53 E-value=5.1e-14 Score=94.83 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=62.0
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ..+|+.+.+.| ++++||.+||+.|++...... + ..+++|+|+|+.|. |+.+|++|||++
T Consensus 1 m~i~vk~~~g~~~~l~v-~~~~TV~~lK~~i~~~~~i~~-----~--------~~~q~L~~~G~~L~-d~~~L~~~~i~~ 65 (77)
T cd01805 1 MKITFKTLKQQTFPIEV-DPDDTVAELKEKIEEEKGCDY-----P--------PEQQKLIYSGKILK-DDTTLEEYKIDE 65 (77)
T ss_pred CEEEEEeCCCCEEEEEE-CCCCcHHHHHHHHHHhhCCCC-----C--------hhHeEEEECCEEcc-CCCCHHHcCCCC
Confidence 89999 89999999999 889999999999999642200 1 24779999999994 779999999999
Q ss_pred CCEEEEEee
Q psy2972 127 QCEITFVKR 135 (143)
Q Consensus 127 g~tl~fv~r 135 (143)
|++|++..+
T Consensus 66 ~~~i~~~~~ 74 (77)
T cd01805 66 KDFVVVMVS 74 (77)
T ss_pred CCEEEEEEe
Confidence 999998754
No 13
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.52 E-value=5e-14 Score=94.37 Aligned_cols=70 Identities=20% Similarity=0.372 Sum_probs=59.5
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ...|+ ..+.| ++++||.+||++|++.+ |+++ .+|+|+|+|+.| +|+.+|.+|||++
T Consensus 1 ~~i~vk~~~g~-~~l~v-~~~~TV~~lK~~I~~~~-------~i~~--------~~~~Li~~Gk~L-~d~~tL~~~~i~~ 62 (71)
T cd01808 1 IKVTVKTPKDK-EEIEI-AEDASVKDFKEAVSKKF-------KANQ--------EQLVLIFAGKIL-KDTDTLTQHNIKD 62 (71)
T ss_pred CEEEEEcCCCC-EEEEE-CCCChHHHHHHHHHHHh-------CCCH--------HHEEEEECCeEc-CCCCcHHHcCCCC
Confidence 57888 77786 59999 89999999999999964 3322 478999999999 4788999999999
Q ss_pred CCEEEEEee
Q psy2972 127 QCEITFVKR 135 (143)
Q Consensus 127 g~tl~fv~r 135 (143)
|++||++.|
T Consensus 63 ~stl~l~~~ 71 (71)
T cd01808 63 GLTVHLVIK 71 (71)
T ss_pred CCEEEEEEC
Confidence 999999875
No 14
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.52 E-value=8e-14 Score=92.16 Aligned_cols=71 Identities=25% Similarity=0.382 Sum_probs=61.8
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ..+|+.+++.+ ++++||.+||++|++.+. ++. ..++|+|+|+.| +|+.+|.+|||++
T Consensus 1 i~i~vk~~~g~~~~~~v-~~~~tv~~lK~~i~~~~g-------i~~--------~~q~L~~~g~~L-~d~~~L~~~~i~~ 63 (72)
T cd01809 1 IEIKVKTLDSQTHTFTV-EEEITVLDLKEKIAEEVG-------IPV--------EQQRLIYSGRVL-KDDETLSEYKVED 63 (72)
T ss_pred CEEEEEeCCCCEEEEEE-CCCCcHHHHHHHHHHHHC-------cCH--------HHeEEEECCEEC-CCcCcHHHCCCCC
Confidence 78999 88899999999 888999999999999753 322 367899999988 5789999999999
Q ss_pred CCEEEEEee
Q psy2972 127 QCEITFVKR 135 (143)
Q Consensus 127 g~tl~fv~r 135 (143)
|++||++.|
T Consensus 64 ~~~l~l~~~ 72 (72)
T cd01809 64 GHTIHLVKR 72 (72)
T ss_pred CCEEEEEeC
Confidence 999999875
No 15
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.52 E-value=4.7e-14 Score=94.14 Aligned_cols=69 Identities=17% Similarity=0.356 Sum_probs=60.2
Q ss_pred EEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCC
Q psy2972 50 CCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQC 128 (143)
Q Consensus 50 l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~ 128 (143)
|+| ..+|+.+++.| ++++||.+||+.|+++. |.+ +.+++|+|+|+.| +|+.+|.+|||++|+
T Consensus 1 i~vk~~~g~~~~~~v-~~~~tV~~lK~~i~~~~-------gi~--------~~~q~Li~~G~~L-~d~~~l~~~~i~~~s 63 (70)
T cd01798 1 VYVRTNTGHTFPVEV-DPDTDIKQLKEVVAKRQ-------GVP--------PDQLRVIFAGKEL-RNTTTIQECDLGQQS 63 (70)
T ss_pred CEEEcCCCCEEEEEE-CCCChHHHHHHHHHHHH-------CCC--------HHHeEEEECCeEC-CCCCcHHHcCCCCCC
Confidence 467 77899999999 89999999999999964 332 2578999999999 578999999999999
Q ss_pred EEEEEee
Q psy2972 129 EITFVKR 135 (143)
Q Consensus 129 tl~fv~r 135 (143)
+||++.|
T Consensus 64 tl~l~~~ 70 (70)
T cd01798 64 ILHAVRR 70 (70)
T ss_pred EEEEEeC
Confidence 9999875
No 16
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.49 E-value=1e-13 Score=91.44 Aligned_cols=67 Identities=24% Similarity=0.430 Sum_probs=59.2
Q ss_pred eCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEE
Q psy2972 54 ADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFV 133 (143)
Q Consensus 54 ~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv 133 (143)
.+|+.+++.| ++++||.+||+.|+..+... +.++.|+|+|+.| +|+.+|.+|||++|++|+++
T Consensus 3 ~~g~~~~~~v-~~~~tV~~lK~~i~~~~~~~---------------~~~~~L~~~G~~L-~d~~tL~~~~i~~~~~I~l~ 65 (69)
T PF00240_consen 3 LSGKTFTLEV-DPDDTVADLKQKIAEETGIP---------------PEQQRLIYNGKEL-DDDKTLSDYGIKDGSTIHLV 65 (69)
T ss_dssp TTSEEEEEEE-ETTSBHHHHHHHHHHHHTST---------------GGGEEEEETTEEE-STTSBTGGGTTSTTEEEEEE
T ss_pred CCCcEEEEEE-CCCCCHHHhhhhcccccccc---------------cccceeeeeeecc-cCcCcHHHcCCCCCCEEEEE
Confidence 5789999999 89999999999999975321 3578999999999 79999999999999999999
Q ss_pred eeec
Q psy2972 134 KRLK 137 (143)
Q Consensus 134 ~rlr 137 (143)
.+.|
T Consensus 66 ~k~~ 69 (69)
T PF00240_consen 66 IKPR 69 (69)
T ss_dssp ESSE
T ss_pred EecC
Confidence 8765
No 17
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.48 E-value=1.4e-13 Score=93.06 Aligned_cols=67 Identities=18% Similarity=0.313 Sum_probs=58.4
Q ss_pred EE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCE
Q psy2972 51 CI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCE 129 (143)
Q Consensus 51 ~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~t 129 (143)
.| ..+|+.+++.| ++++||.+||+.|++. +|++. .+|+|+|+|+.| +|+.+|.+|||++|++
T Consensus 2 ~vk~~~G~~~~l~v-~~~~TV~~lK~~I~~~-------~gi~~--------~~q~Li~~G~~L-~D~~~l~~~~i~~~~t 64 (70)
T cd01794 2 KVRLSTGKDVKLSV-SSKDTVGQLKKQLQAA-------EGVDP--------CCQRWFFSGKLL-TDKTRLQETKIQKDYV 64 (70)
T ss_pred eEEcCCCCEEEEEE-CCcChHHHHHHHHHHH-------hCCCH--------HHeEEEECCeEC-CCCCCHHHcCCCCCCE
Confidence 56 57799999999 8999999999999985 44432 578999999999 5889999999999999
Q ss_pred EEEEe
Q psy2972 130 ITFVK 134 (143)
Q Consensus 130 l~fv~ 134 (143)
||+..
T Consensus 65 v~~~~ 69 (70)
T cd01794 65 VQVIV 69 (70)
T ss_pred EEEEe
Confidence 99975
No 18
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.47 E-value=4.2e-13 Score=93.79 Aligned_cols=80 Identities=21% Similarity=0.276 Sum_probs=71.0
Q ss_pred hccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhh
Q psy2972 42 LLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLS 120 (143)
Q Consensus 42 l~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~ 120 (143)
.+....|+|+| ..+|+.+.+.| .+++|+..||++++++ +|++ +.+++|+|+|++| +++.|+.
T Consensus 6 ~~~~~~i~I~v~~~~g~~~~~~v-~~~~~l~~l~~~y~~~-------~gi~--------~~~~rf~f~G~~L-~~~~T~~ 68 (87)
T cd01763 6 GEISEHINLKVKGQDGNEVFFKI-KRSTPLKKLMEAYCQR-------QGLS--------MNSVRFLFDGQRI-RDNQTPD 68 (87)
T ss_pred CCCCCeEEEEEECCCCCEEEEEE-cCCCHHHHHHHHHHHH-------hCCC--------ccceEEEECCeEC-CCCCCHH
Confidence 35567899999 88899999999 9999999999999995 4543 3689999999999 5789999
Q ss_pred hhCCCCCCEEEEEeeecc
Q psy2972 121 ELGIESQCEITFVKRLKD 138 (143)
Q Consensus 121 dyGI~~g~tl~fv~rlr~ 138 (143)
+|||++||+|+++.+++|
T Consensus 69 ~l~m~d~d~I~v~l~l~G 86 (87)
T cd01763 69 DLGMEDGDEIEVMLEQTG 86 (87)
T ss_pred HcCCCCCCEEEEEEeccc
Confidence 999999999999999987
No 19
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.46 E-value=4.1e-13 Score=88.84 Aligned_cols=69 Identities=16% Similarity=0.304 Sum_probs=59.7
Q ss_pred EEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCC
Q psy2972 48 IMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQ 127 (143)
Q Consensus 48 m~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g 127 (143)
|+|+|+..|+.+++.| ++++||.+||++|++.+...+ .+++|+|+|+.|. |+.+|.+|||++|
T Consensus 1 i~i~vk~~g~~~~i~v-~~~~tv~~lK~~i~~~~gi~~---------------~~q~L~~~g~~l~-d~~~L~~~~i~~g 63 (71)
T cd01812 1 IRVRVKHGGESHDLSI-SSQATFGDLKKMLAPVTGVEP---------------RDQKLIFKGKERD-DAETLDMSGVKDG 63 (71)
T ss_pred CEEEEEECCEEEEEEE-CCCCcHHHHHHHHHHhhCCCh---------------HHeEEeeCCcccC-ccCcHHHcCCCCC
Confidence 5788966799999999 899999999999999754333 3678999999994 7899999999999
Q ss_pred CEEEEE
Q psy2972 128 CEITFV 133 (143)
Q Consensus 128 ~tl~fv 133 (143)
++|+++
T Consensus 64 ~~l~v~ 69 (71)
T cd01812 64 SKVMLL 69 (71)
T ss_pred CEEEEe
Confidence 999986
No 20
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.45 E-value=4.2e-13 Score=91.34 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=61.2
Q ss_pred EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEE
Q psy2972 53 QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITF 132 (143)
Q Consensus 53 k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~f 132 (143)
+++|+.++++| ++++||.+||+.|+... |++. .+|+|+|+|+.| +|+.+|.+|||++|++||+
T Consensus 4 ~l~g~~~~l~v-~~~~TV~~lK~~i~~~~-------gip~--------~~q~L~~~G~~L-~d~~tL~~~~i~~g~~l~v 66 (76)
T cd01800 4 KLNGQMLNFTL-QLSDPVSVLKVKIHEET-------GMPA--------GKQKLQYEGIFI-KDSNSLAYYNLANGTIIHL 66 (76)
T ss_pred ccCCeEEEEEE-CCCCcHHHHHHHHHHHH-------CCCH--------HHEEEEECCEEc-CCCCcHHHcCCCCCCEEEE
Confidence 57899999999 89999999999999964 3332 477999999988 5779999999999999999
Q ss_pred Eeeeccc
Q psy2972 133 VKRLKDK 139 (143)
Q Consensus 133 v~rlr~k 139 (143)
+.++||-
T Consensus 67 ~~~~~gg 73 (76)
T cd01800 67 QLKERGG 73 (76)
T ss_pred EEecCCC
Confidence 9999984
No 21
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.43 E-value=6e-13 Score=89.71 Aligned_cols=67 Identities=18% Similarity=0.366 Sum_probs=56.9
Q ss_pred EEE-Ee-CCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCC
Q psy2972 50 CCI-QA-DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQ 127 (143)
Q Consensus 50 l~V-k~-~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g 127 (143)
|+| .. +|+.+++.| ++++||.+||+.|++. +|.+. .+|+|+|+|+.|.++..+|++|||++|
T Consensus 1 l~v~~~~~g~~~~l~v-~~~~TV~~lK~~I~~~-------~gip~--------~~q~Li~~Gk~L~D~~~~L~~~gi~~~ 64 (71)
T cd01796 1 ITVYTARSETTFSLDV-DPDLELENFKALCEAE-------SGIPA--------SQQQLIYNGRELVDNKRLLALYGVKDG 64 (71)
T ss_pred CEEEECCCCCEEEEEE-CCcCCHHHHHHHHHHH-------hCCCH--------HHeEEEECCeEccCCcccHHHcCCCCC
Confidence 466 56 789999999 8899999999999986 44422 578999999999655579999999999
Q ss_pred CEEEE
Q psy2972 128 CEITF 132 (143)
Q Consensus 128 ~tl~f 132 (143)
++||+
T Consensus 65 ~~l~l 69 (71)
T cd01796 65 DLVVL 69 (71)
T ss_pred CEEEE
Confidence 99997
No 22
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.42 E-value=4.9e-13 Score=93.19 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=58.8
Q ss_pred cEEEEE-EeCCce--EEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhC
Q psy2972 47 SIMCCI-QADNKK--FDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELG 123 (143)
Q Consensus 47 am~l~V-k~~g~~--~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyG 123 (143)
.|+|+| +.+++. |+|++ ++++||.+||+.|+..+.- .+ -..+++|||+|+.| .|+.+|++|+
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~-~~~~TV~~lK~~i~~~~~~------~~-------~~~~QrLIy~GKiL-kD~~tL~~~~ 65 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSC-FLNWTVGELKTHLSRVYPS------KP-------LEQDQRLIYSGKLL-PDHLKLRDVL 65 (79)
T ss_pred CeEEEEECCCCCeEEEEEec-CCcChHHHHHHHHHHhcCC------CC-------ChhHeEEEEcCeec-cchhhHHHHh
Confidence 378999 778888 66666 7889999999999986421 11 12578999999999 5889999997
Q ss_pred --CCCCCEEEEE
Q psy2972 124 --IESQCEITFV 133 (143)
Q Consensus 124 --I~~g~tl~fv 133 (143)
|.+|.++|+|
T Consensus 66 ~~~~~~~tiHLV 77 (79)
T cd01790 66 RKQDEYHMVHLV 77 (79)
T ss_pred hcccCCceEEEE
Confidence 9999999998
No 23
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.37 E-value=1.1e-12 Score=90.69 Aligned_cols=60 Identities=30% Similarity=0.368 Sum_probs=49.7
Q ss_pred ecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEEee
Q psy2972 63 ISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVKR 135 (143)
Q Consensus 63 V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~r 135 (143)
|++.++||.+||+.|++++ .+|++. +.+|+|||+|+.| +|+.+|++|||++|++||++++
T Consensus 16 ~~~~~~TV~~LK~kI~~~~-----~egi~~-------~dqQrLIy~GKiL-~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQL-----PDSLPD-------PELIDLIHCGRKL-KDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred cCCccCcHHHHHHHHHHhh-----ccCCCC-------hHHeEEEeCCcCC-CCCCcHHHcCCCCCCEEEEEeC
Confidence 4578899999999999974 134321 3588999999999 5889999999999999999864
No 24
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.35 E-value=6e-12 Score=85.89 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=59.6
Q ss_pred EEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEee---CCcccccccchhhhhCC
Q psy2972 48 IMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSF---DGIKLTNEKSLLSELGI 124 (143)
Q Consensus 48 m~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif---~gkkL~~d~~tL~dyGI 124 (143)
|+|+|+..|+.++|+| ++++||++||++|++.....++ +|.|+| .|+.| +|+.+|.+|||
T Consensus 1 ~~i~vk~~g~~~~v~v-~~~~Tv~~lK~~i~~~tgvp~~---------------~QKLi~~~~~Gk~l-~D~~~L~~~~i 63 (74)
T cd01813 1 VPVIVKWGGQEYSVTT-LSEDTVLDLKQFIKTLTGVLPE---------------RQKLLGLKVKGKPA-EDDVKISALKL 63 (74)
T ss_pred CEEEEEECCEEEEEEE-CCCCCHHHHHHHHHHHHCCCHH---------------HEEEEeecccCCcC-CCCcCHHHcCC
Confidence 5788899999999999 8999999999999997644443 567885 88877 58899999999
Q ss_pred CCCCEEEEE
Q psy2972 125 ESQCEITFV 133 (143)
Q Consensus 125 ~~g~tl~fv 133 (143)
++|+.|+++
T Consensus 64 ~~g~~i~lm 72 (74)
T cd01813 64 KPNTKIMMM 72 (74)
T ss_pred CCCCEEEEE
Confidence 999999985
No 25
>KOG0010|consensus
Probab=99.34 E-value=1.9e-12 Score=114.69 Aligned_cols=75 Identities=17% Similarity=0.330 Sum_probs=65.6
Q ss_pred cEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 47 SIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 47 am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
.++|+||..+.+++|.| +.++||.+||+.|...|...++ +++|||.|++|. |+.||..|||+|
T Consensus 15 ~irV~Vkt~~dk~~~~V-~~~ssV~qlKE~I~~~f~a~~d---------------qlvLIfaGrILK-D~dTL~~~gI~D 77 (493)
T KOG0010|consen 15 LIRVTVKTPKDKYEVNV-ASDSSVLQLKELIAQRFGAPPD---------------QLVLIYAGRILK-DDDTLKQYGIQD 77 (493)
T ss_pred eeEEEEecCCcceeEec-ccchHHHHHHHHHHHhcCCChh---------------HeeeeecCcccc-ChhhHHHcCCCC
Confidence 48899966666999999 9999999999999998854433 779999999995 999999999999
Q ss_pred CCEEEEEeeecc
Q psy2972 127 QCEITFVKRLKD 138 (143)
Q Consensus 127 g~tl~fv~rlr~ 138 (143)
|.|||+|++.--
T Consensus 78 g~TvHLVik~~~ 89 (493)
T KOG0010|consen 78 GHTVHLVIKSQP 89 (493)
T ss_pred CcEEEEEeccCC
Confidence 999999998643
No 26
>KOG0005|consensus
Probab=99.30 E-value=3.2e-12 Score=85.54 Aligned_cols=69 Identities=16% Similarity=0.357 Sum_probs=63.7
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|.|.| +++|+.+++.| +++++|..+|+.|+++ +|+|+ .|++|+|+|+++ .|+.|.++|++.-
T Consensus 1 m~iKvktLt~KeIeidI-ep~DkverIKErvEEk-------eGIPp--------~qqrli~~gkqm-~DD~tA~~Y~~~~ 63 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDI-EPTDKVERIKERVEEK-------EGIPP--------QQQRLIYAGKQM-NDDKTAAHYNLLG 63 (70)
T ss_pred CeeeEeeeccceEEEee-CcchHHHHHHHHhhhh-------cCCCc--------hhhhhhhccccc-cccccHHHhhhcc
Confidence 67899 99999999999 9999999999999996 78765 589999999999 5899999999999
Q ss_pred CCEEEEE
Q psy2972 127 QCEITFV 133 (143)
Q Consensus 127 g~tl~fv 133 (143)
|+.+|++
T Consensus 64 GSVlHlv 70 (70)
T KOG0005|consen 64 GSVLHLV 70 (70)
T ss_pred ceeEeeC
Confidence 9999985
No 27
>KOG0003|consensus
Probab=99.29 E-value=3.9e-13 Score=99.14 Aligned_cols=75 Identities=17% Similarity=0.386 Sum_probs=68.6
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|++++ ++.|+.+.|+| +++.||..+|..|+++ +|+++ .+++|+|+|++| .|..|+.+|||+.
T Consensus 1 ~~~~~~~~~GKT~~le~-EpS~ti~~vKA~i~~~-------~Gi~~--------~~~~L~~~~k~L-ED~~Tla~Y~i~~ 63 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEV-EPSDTIDNVKAKIQDK-------EGIPP--------DQQRLIFAGKQL-EDGRTLADYNIQK 63 (128)
T ss_pred CcEEEEEeeCceEEEEe-cccchHHHHHHHhccc-------cCCCH--------HHHHHHhccccc-ccCCcccccCccc
Confidence 56788 99999999999 9999999999999996 67654 578999999999 5899999999999
Q ss_pred CCEEEEEeeeccc
Q psy2972 127 QCEITFVKRLKDK 139 (143)
Q Consensus 127 g~tl~fv~rlr~k 139 (143)
-||+|.+.||||-
T Consensus 64 ~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 64 ESTLHLVLRLRGG 76 (128)
T ss_pred hhhhhhhHHHhcC
Confidence 9999999999985
No 28
>KOG0004|consensus
Probab=99.28 E-value=2.2e-12 Score=99.75 Aligned_cols=75 Identities=20% Similarity=0.400 Sum_probs=69.4
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| .+.|+.+..+| +.++||..+|+.||++ ||++. .|++|||.|++|. |..+|+||||+.
T Consensus 1 m~ifVk~l~~kti~~ev-e~~~ti~~~Kakiq~~-------egIp~--------dqqrlifag~qLe-dgrtlSDY~Iqk 63 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEV-EANDTIDNVKAKIQDK-------EGIPP--------DQQRLIFAGKQLE-DGRTLSDYNIQK 63 (156)
T ss_pred Cccchhhccccceeeee-cccccHHHHHHhhhcc-------cCCCc--------hhhhhhhhhcccc-cCCccccccccc
Confidence 78999 99999999999 9999999999999984 78765 6899999999995 679999999999
Q ss_pred CCEEEEEeeeccc
Q psy2972 127 QCEITFVKRLKDK 139 (143)
Q Consensus 127 g~tl~fv~rlr~k 139 (143)
.+|+|++.+|||-
T Consensus 64 estl~l~l~l~Gg 76 (156)
T KOG0004|consen 64 ESTLHLVLRLRGG 76 (156)
T ss_pred cceEEEEEEecCC
Confidence 9999999999984
No 29
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.28 E-value=1.7e-11 Score=84.05 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=56.4
Q ss_pred EEEE--EeC-CceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCC
Q psy2972 49 MCCI--QAD-NKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIE 125 (143)
Q Consensus 49 ~l~V--k~~-g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~ 125 (143)
.++| +.+ |..+.+.| ++++||++||..|+.+ +|+++ .+|+| |+|+.|.+|+.+|.+|||+
T Consensus 2 ~~~~~~~~~~~~t~~l~v-~~~~TV~~lK~kI~~~-------~gip~--------~~QrL-~~G~~L~dD~~tL~~ygi~ 64 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTV-RPDMTVAQLKDKVFLD-------YGFPP--------AVQRW-VIGQRLARDQETLYSHGIR 64 (75)
T ss_pred EEEEeccccCCCeEEEEE-CCCCcHHHHHHHHHHH-------HCcCH--------HHEEE-EcCCeeCCCcCCHHHcCCC
Confidence 4556 444 77799999 8899999999999986 45433 57899 9999997788999999999
Q ss_pred -CCCEEEEE
Q psy2972 126 -SQCEITFV 133 (143)
Q Consensus 126 -~g~tl~fv 133 (143)
+|++||+-
T Consensus 65 ~~g~~~~l~ 73 (75)
T cd01799 65 TNGDSAFLY 73 (75)
T ss_pred CCCCEEEEE
Confidence 89999974
No 30
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.21 E-value=6.2e-11 Score=75.83 Aligned_cols=64 Identities=17% Similarity=0.292 Sum_probs=53.0
Q ss_pred EEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCC
Q psy2972 48 IMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQ 127 (143)
Q Consensus 48 m~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g 127 (143)
|+|+|+..++.+++.| ++++||++||+.|+..+...+ ..++|+|+|+.|. |+.+|.+|||++|
T Consensus 1 ~~i~vk~~~~~~~~~v-~~~~tv~~lk~~i~~~~~~~~---------------~~~~L~~~g~~L~-d~~tL~~~~i~~~ 63 (64)
T smart00213 1 IELTVKTLDGTITLEV-KPSDTVSELKEKIAELTGIPV---------------EQQRLIYKGKVLE-DDRTLADYNIQDG 63 (64)
T ss_pred CEEEEEECCceEEEEE-CCCCcHHHHHHHHHHHHCCCH---------------HHEEEEECCEECC-CCCCHHHcCCcCC
Confidence 7899944447899999 888999999999999764322 3578999999985 6799999999998
Q ss_pred C
Q psy2972 128 C 128 (143)
Q Consensus 128 ~ 128 (143)
+
T Consensus 64 ~ 64 (64)
T smart00213 64 S 64 (64)
T ss_pred C
Confidence 6
No 31
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=1.2e-10 Score=101.11 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=62.0
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ++.|+.|.|.| .+++||.+||+.|+..... ++.+ ..+++|+|+|+.| +|+.+|.+|||++
T Consensus 1 MkItVKtl~g~~~~IeV-~~~~TV~dLK~kI~~~~g~----~~ip--------~~~QkLIy~GkiL-~Dd~tL~dy~I~e 66 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDM-EPDETVKELKEKIEAEQGK----DAYP--------VAQQKLIYSGKIL-SDDKTVREYKIKE 66 (378)
T ss_pred CEEEEEeCCCCEEEEEe-CCcChHHHHHHHHHHhhCC----CCCC--------hhHeEEEECCEEC-CCCCcHHHcCCCC
Confidence 89999 89999999999 8999999999999986320 0021 2478999999999 5778999999999
Q ss_pred CCEEEEEee
Q psy2972 127 QCEITFVKR 135 (143)
Q Consensus 127 g~tl~fv~r 135 (143)
|+.|++...
T Consensus 67 ~~~Ivvmv~ 75 (378)
T TIGR00601 67 KDFVVVMVS 75 (378)
T ss_pred CCEEEEEec
Confidence 999998754
No 32
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.09 E-value=5.7e-10 Score=72.14 Aligned_cols=65 Identities=22% Similarity=0.375 Sum_probs=55.3
Q ss_pred EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEE
Q psy2972 53 QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITF 132 (143)
Q Consensus 53 k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~f 132 (143)
..+|+.+.+.+ ++++||.+||++|++.+...+ ..++|+|+|+.| +|+.+|.+||+.+|++|++
T Consensus 4 ~~~~~~~~~~~-~~~~ti~~lK~~i~~~~~~~~---------------~~~~l~~~g~~l-~d~~~l~~~~v~~~~~i~v 66 (69)
T cd01769 4 TLTGKTFELEV-SPDDTVAELKAKIAAKEGVPP---------------EQQRLIYAGKIL-KDDKTLSDYGIQDGSTLHL 66 (69)
T ss_pred ccCCCEEEEEE-CCCChHHHHHHHHHHHHCcCh---------------HHEEEEECCcCC-CCcCCHHHCCCCCCCEEEE
Confidence 45689999999 889999999999999764322 356899999998 5889999999999999998
Q ss_pred Ee
Q psy2972 133 VK 134 (143)
Q Consensus 133 v~ 134 (143)
..
T Consensus 67 ~~ 68 (69)
T cd01769 67 VL 68 (69)
T ss_pred EE
Confidence 74
No 33
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.05 E-value=6.6e-10 Score=73.90 Aligned_cols=71 Identities=25% Similarity=0.331 Sum_probs=59.0
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ..+|+.+.+.| .++.|+..|.+++.+.....++ .++.|.|+|+.| +++.|++++||++
T Consensus 1 I~i~v~~~~~~~~~~~v-~~~~~~~~l~~~~~~~~~i~~~--------------~~~~l~fdG~~L-~~~~T~~~~~ied 64 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKV-KPTTTVSKLIEKYCEKKGIPPE--------------ESIRLIFDGKRL-DPNDTPEDLGIED 64 (72)
T ss_dssp EEEEEEETTSEEEEEEE-ETTSCCHHHHHHHHHHHTTTT---------------TTEEEEETTEEE--TTSCHHHHT-ST
T ss_pred CEEEEEeCCCCEEEEEE-CCCCcHHHHHHHHHHhhCCCcc--------------ceEEEEECCEEc-CCCCCHHHCCCCC
Confidence 78999 88899999999 8899999999999887533221 378999999999 5779999999999
Q ss_pred CCEEEEEe
Q psy2972 127 QCEITFVK 134 (143)
Q Consensus 127 g~tl~fv~ 134 (143)
||+|+++.
T Consensus 65 ~d~Idv~I 72 (72)
T PF11976_consen 65 GDTIDVII 72 (72)
T ss_dssp TEEEEEE-
T ss_pred CCEEEEEC
Confidence 99999863
No 34
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.92 E-value=1.9e-09 Score=73.52 Aligned_cols=60 Identities=20% Similarity=0.383 Sum_probs=46.3
Q ss_pred EEecCCCCcHHHHHHHHHHHHhH-hHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEEe
Q psy2972 61 IVISPKNTRVSDLKRTIERQITM-QMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVK 134 (143)
Q Consensus 61 V~V~~~~aTV~dLK~aI~~~~~~-~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~ 134 (143)
+.+.++++||.|||++|++.+.. ++.|++ +++.+.|+.| .|+.+|++|||++|++|||+.
T Consensus 16 ~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqr-------------l~~~~~g~~L-~d~~tL~~~gv~~g~~lyvKD 76 (77)
T cd01801 16 LKVSSGDATIADLKKLIAKSSPQLTVNRQS-------------LRLEPKGKSL-KDDDTLVDLGVGAGATLYVRD 76 (77)
T ss_pred cccCCCCccHHHHHHHHHHHcCCCCcceeE-------------EEeCCCCccc-CCcccHhhcCCCCCCEEEEee
Confidence 44425789999999999998642 345443 2456899999 477899999999999999973
No 35
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.84 E-value=7e-09 Score=75.63 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=54.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEEee
Q psy2972 57 KKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVKR 135 (143)
Q Consensus 57 ~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~r 135 (143)
...+++| .+++||.+||..|+.+|...+. +|.|+|+|+.|.||.+||.+|||..|+.|++...
T Consensus 15 ~~~~L~V-~~~~TVg~LK~lImQ~f~V~P~---------------dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 15 GEKALLV-SANQTLKELKIQIMHAFSVAPF---------------DQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CCceEEe-CccccHHHHHHHHHHHhcCCcc---------------cceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 3467788 8899999999999999854443 6689999999999999999999999999999864
No 36
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.83 E-value=3.8e-09 Score=78.16 Aligned_cols=80 Identities=16% Similarity=0.027 Sum_probs=59.8
Q ss_pred EEEEEEeC-Cce-EEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhC--
Q psy2972 48 IMCCIQAD-NKK-FDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELG-- 123 (143)
Q Consensus 48 m~l~Vk~~-g~~-~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyG-- 123 (143)
+.|..|+. |+- =+..+ ++++||.+||+.|++...- .++|++. -+.++.|||+|+.| .|+.||.+|+
T Consensus 5 ~e~kfrl~dg~digp~~~-~~sdTV~~lKekI~~~~p~--~ke~~P~------~~~~qKLIysGKiL-eD~~TL~d~~~p 74 (113)
T cd01814 5 IEIKFRLYDGSDIGPKRY-PAATTVDFLKERVVSQWPK--DKEVGPK------TVNEVKLISAGKIL-ENSKTVGECRSP 74 (113)
T ss_pred EEEEEEccCCCccCcccc-ChhhHHHHHHHHHHHhccc--ccccCCC------CHHHeEEEeCCeec-CCCCcHHHhCCc
Confidence 34444433 533 46667 7889999999999986421 3455432 24699999999999 5889999999
Q ss_pred ----CCCCCEEEEEeeec
Q psy2972 124 ----IESQCEITFVKRLK 137 (143)
Q Consensus 124 ----I~~g~tl~fv~rlr 137 (143)
+....|+|+|.|--
T Consensus 75 ~g~~~~~~~TmHvvlr~~ 92 (113)
T cd01814 75 VGDIAGGVITMHVVVQPP 92 (113)
T ss_pred ccccCCCceEEEEEecCC
Confidence 88889999998864
No 37
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.83 E-value=1.9e-08 Score=70.03 Aligned_cols=71 Identities=23% Similarity=0.440 Sum_probs=55.2
Q ss_pred EEEEEEeC--CceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEE-eeCCc-----ccccccchh
Q psy2972 48 IMCCIQAD--NKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWL-SFDGI-----KLTNEKSLL 119 (143)
Q Consensus 48 m~l~Vk~~--g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~L-if~gk-----kL~~d~~tL 119 (143)
++|.|+.+ ....+..+ +++.||.+||+.++..+...+ .++.| +|+|. .|.+|.++|
T Consensus 2 v~v~i~~~~~~~~~ekr~-~~~~Tv~~lK~kl~~~~G~~~---------------~~mrL~l~~~~~~~~~~l~~d~~~L 65 (84)
T cd01789 2 VTVNITSSADSFSFEKKY-SRGLTIAELKKKLELVVGTPA---------------SSMRLQLFDGDDKLVSKLDDDDALL 65 (84)
T ss_pred EEEEEEeCCCceeeeEec-CCCCcHHHHHHHHHHHHCCCc---------------cceEEEEEcCCCCeEeecCCCccEe
Confidence 45666444 44456669 889999999999999863322 35677 47887 588899999
Q ss_pred hhhCCCCCCEEEEEe
Q psy2972 120 SELGIESQCEITFVK 134 (143)
Q Consensus 120 ~dyGI~~g~tl~fv~ 134 (143)
.+||+++|++||++.
T Consensus 66 ~~y~~~dg~~IhVvD 80 (84)
T cd01789 66 GSYPVDDGCRIHVID 80 (84)
T ss_pred eeccCCCCCEEEEEe
Confidence 999999999999986
No 38
>PLN02560 enoyl-CoA reductase
Probab=98.78 E-value=1.7e-08 Score=85.55 Aligned_cols=70 Identities=17% Similarity=0.374 Sum_probs=55.8
Q ss_pred EEEEE-EeCCceE---EEEecCCCCcHHHHHHHHHHHHhH-hHhhcccccccccccccceEEEeeC---Cc----ccccc
Q psy2972 48 IMCCI-QADNKKF---DIVISPKNTRVSDLKRTIERQITM-QMKRKGLSKQISWRHVWKSYWLSFD---GI----KLTNE 115 (143)
Q Consensus 48 m~l~V-k~~g~~~---~V~V~~~~aTV~dLK~aI~~~~~~-~~~reg~~~~IsW~~vw~~~~Lif~---gk----kL~~d 115 (143)
|+|+| ..+|+.+ +|+| ++++||+|||++|+++... ++ .+++|++. |+ .| +|
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev-~~~aTV~dLK~~Isk~~~~~~~---------------~RqRL~~~~~~gk~~g~~L-~d 63 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEV-PDSATVADLKKAIHKRKKKYYP---------------SRQRLTLPLPPGKTRPTVL-DD 63 (308)
T ss_pred CEEEEEcCCCCeecceeEEc-CCCCcHHHHHHHHHHHcCCCCh---------------hheEEEEecCCCCcCcccc-CC
Confidence 78899 7778887 7999 8999999999999997421 22 35578873 43 45 67
Q ss_pred cchhhhhCCCCCCEEEEEe
Q psy2972 116 KSLLSELGIESQCEITFVK 134 (143)
Q Consensus 116 ~~tL~dyGI~~g~tl~fv~ 134 (143)
+++|+++|+++|++|+|+.
T Consensus 64 ~ktL~d~gv~~gstLy~kD 82 (308)
T PLN02560 64 SKSLKDYGLGDGGTVVFKD 82 (308)
T ss_pred CCCHHhcCCCCCceEEEEe
Confidence 8899999999999999974
No 39
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.57 E-value=3.1e-07 Score=63.68 Aligned_cols=71 Identities=23% Similarity=0.371 Sum_probs=53.5
Q ss_pred EEEEEEeCCc---eEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeC----C---cccccccc
Q psy2972 48 IMCCIQADNK---KFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFD----G---IKLTNEKS 117 (143)
Q Consensus 48 m~l~Vk~~g~---~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~----g---kkL~~d~~ 117 (143)
++|+|+.+.. ..+..+ +.+.||.+||..++..+...+. ++.|.+- + ..+.+|.+
T Consensus 2 v~l~It~~~~~~~~~ekr~-~~~~Tv~eLK~kl~~~~Gi~~~---------------~m~L~l~~~~~~~~~~~~~dd~~ 65 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRF-PKSITVSELKQKLEKLTGIPPS---------------DMRLQLKSDKDDSKIEELDDDDA 65 (87)
T ss_dssp EEEEEEESSSSSSEEEEEE-ETTSBHHHHHHHHHHHHTS-TT---------------TEEEEEE-TSSSSEEEESSGSSS
T ss_pred EEEEEEeCCCCCeeEEEEc-CCCCCHHHHHHHHHHHhCCCcc---------------cEEEEEEecCCCccccccCCCcc
Confidence 4677755544 899999 8889999999999999854443 4444443 2 34677899
Q ss_pred hhhhhCCCCCCEEEEEe
Q psy2972 118 LLSELGIESQCEITFVK 134 (143)
Q Consensus 118 tL~dyGI~~g~tl~fv~ 134 (143)
+|.+||+++|++||++.
T Consensus 66 ~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 66 TLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp BCCHHT-STTEEEEEEE
T ss_pred EeecCCCCCCCEEEEEe
Confidence 99999999999999874
No 40
>KOG0001|consensus
Probab=98.53 E-value=1.3e-06 Score=55.38 Aligned_cols=72 Identities=18% Similarity=0.339 Sum_probs=61.5
Q ss_pred EEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCC
Q psy2972 50 CCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQC 128 (143)
Q Consensus 50 l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~ 128 (143)
+++ ...|+.+.+.+ ....+|..+|..|+.. +|++ +..+++.|.|+.|. |+.+|.+|+|.+++
T Consensus 2 ~~~~~~~gk~~~~~~-~~~~~i~~~k~~i~~~-------~~~~--------~~~q~~~~~~~~l~-d~~~l~~~~i~~~~ 64 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEV-SPSDTIEVVKAKIRDK-------EGIP--------VDQQRLIFGGKPLE-DGRTLADYNIQEGS 64 (75)
T ss_pred EEEEecCCCEEEEEe-cCCCHHHHHHHHHHhh-------cCCC--------CeeEEEEECCEECc-CCCcHHHhCCCCCC
Confidence 456 78899999999 8889999999999985 4442 35788999999995 67999999999999
Q ss_pred EEEEEeeecc
Q psy2972 129 EITFVKRLKD 138 (143)
Q Consensus 129 tl~fv~rlr~ 138 (143)
+++++.++++
T Consensus 65 ~~~l~~~~~~ 74 (75)
T KOG0001|consen 65 TLHLVLSLRG 74 (75)
T ss_pred EEEEEEecCC
Confidence 9999998864
No 41
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.49 E-value=1.2e-06 Score=64.42 Aligned_cols=81 Identities=25% Similarity=0.182 Sum_probs=56.2
Q ss_pred cEEEEE-EeCCc-eEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 47 SIMCCI-QADNK-KFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 47 am~l~V-k~~g~-~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
.+.|+. ..+|+ .-++.. +++.||++||+.|...+.-.- +..+. + +...+|||.|+.| +|+++|.++++
T Consensus 2 ~i~lkf~l~~G~d~~~~~~-~~~~TV~~lKe~i~~~WP~d~--~~~p~--s----~~~lRLI~~GriL-~d~~tL~~~~~ 71 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRF-DPSTTVADLKERIWAEWPEDW--EERPK--S----PSDLRLIYAGRIL-EDNKTLSDCRL 71 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE--TTSBHHHHHHHHHHSSSTTS--SSTT---S----GGGEEEEETTEEE--SSSBTGGGT-
T ss_pred eEEEEEEEeCCCccccccc-CccChHHHHHHHHHHHCcccc--ccCCC--C----hhhEEEEeCCeec-CCcCcHHHhCC
Confidence 356777 67888 889999 889999999999999652111 11122 2 4579999999988 59999999999
Q ss_pred CCCC------EEEEEeeec
Q psy2972 125 ESQC------EITFVKRLK 137 (143)
Q Consensus 125 ~~g~------tl~fv~rlr 137 (143)
..|+ ++|++.|-.
T Consensus 72 ~~~~~~~~~~vmHlvvrp~ 90 (111)
T PF13881_consen 72 PSGETPGGPTVMHLVVRPN 90 (111)
T ss_dssp -TTSETT--EEEEEEE-SS
T ss_pred CCCCCCCCCEEEEEEecCC
Confidence 9888 577777643
No 42
>KOG0011|consensus
Probab=98.40 E-value=7.4e-07 Score=76.36 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=62.3
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ++.++.|++.+ .++.||.++|+.|+.... + .|--.++.|||+|+.| .|+.++.+|+|+.
T Consensus 1 m~lt~KtL~q~~F~iev-~Pe~tV~evK~kIet~~g--------~-----dyP~~~QkLIy~GkiL-~D~~tv~Eykv~E 65 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEV-KPEDTVVEVKKKIETEKG--------P-----DYPAEQQKLIYSGKIL-KDETTVGEYKVKE 65 (340)
T ss_pred CeeEeeeccCceeEeec-CcchhHHHHHHHHHhccC--------C-----CCchhhheeeecceec-cCCcchhhhcccc
Confidence 89999 99999999999 999999999999999532 1 1233578999999999 5899999999999
Q ss_pred CCEEEEEee
Q psy2972 127 QCEITFVKR 135 (143)
Q Consensus 127 g~tl~fv~r 135 (143)
++-|-+...
T Consensus 66 ~~fiVvMls 74 (340)
T KOG0011|consen 66 KKFIVVMLS 74 (340)
T ss_pred CceEEEEEe
Confidence 998877654
No 43
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=98.12 E-value=5.3e-06 Score=56.75 Aligned_cols=75 Identities=13% Similarity=0.249 Sum_probs=49.9
Q ss_pred cEEEEEEeC-CceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEe-eCCcccccccchhhhhCC
Q psy2972 47 SIMCCIQAD-NKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLS-FDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 47 am~l~Vk~~-g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Li-f~gkkL~~d~~tL~dyGI 124 (143)
..+|+|..+ |+.+++.+ |.+.+|++|-..+-+.+......... . .++.|. .+|..| +++.+|.++||
T Consensus 2 ~~rVtv~~~~~~~~Dl~l-P~~vpv~~li~~l~~~~~~~~~~~~~-~--------~~~~L~~~~g~~L-~~~~tL~~~gV 70 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLAL-PADVPVAELIPELVELLGLPGDDPPG-H--------GQWVLARAGGRPL-DPDQTLADAGV 70 (79)
T ss_dssp EEEEEEE-TT--EEEEEE-ETTSBTTHHHHHHHHHS---S---TT----------E-EEEG-GGTEEE-ETTSBCGGGT-
T ss_pred EEEEEEEcCCCcEEEEEc-CCCCcHHHHHHHHHHHhCCccCCCCC-c--------ceEEEEecCCccc-CCcCcHhHcCC
Confidence 357788444 69999999 99999999999999988643321111 1 145777 778877 68999999999
Q ss_pred CCCCEEEE
Q psy2972 125 ESQCEITF 132 (143)
Q Consensus 125 ~~g~tl~f 132 (143)
.||+.|++
T Consensus 71 ~dGd~L~L 78 (79)
T PF08817_consen 71 RDGDVLVL 78 (79)
T ss_dssp -TT-EEEE
T ss_pred CCCCEEEe
Confidence 99999986
No 44
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.10 E-value=2.4e-05 Score=46.45 Aligned_cols=63 Identities=24% Similarity=0.443 Sum_probs=52.2
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEEe
Q psy2972 55 DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVK 134 (143)
Q Consensus 55 ~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~ 134 (143)
++....+.+ .+++|+.+||+.+.+++.. .+..|.|.++|..+ .+...+.++++.+|+++++..
T Consensus 6 ~~~~~~~~~-~~~~tv~~l~~~i~~~~~~---------------~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLV-PSGTTVADLKEKLAKKLGL---------------PPEQQRLLVNGKIL-PDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEc-CCCCcHHHHHHHHHHHHCc---------------ChHHeEEEECCeEC-CCCCcHHHcCCCCCCEEEEEe
Confidence 588889999 7889999999999998631 13577899999888 456677899999999999975
No 45
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.10 E-value=5.6e-06 Score=57.55 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=39.4
Q ss_pred CCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEee--CC-ccc-ccccchhh
Q psy2972 45 GQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSF--DG-IKL-TNEKSLLS 120 (143)
Q Consensus 45 g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif--~g-kkL-~~d~~tL~ 120 (143)
.++|-|.|+...-.+-|++ ++++|+.+|++.|++.+..... .|.|.. ++ ..+ ..++.+|+
T Consensus 2 ~~~milRvrS~dG~~Rie~-~~~~t~~~L~~kI~~~l~~~~~---------------~~~L~~~~~~~~~l~s~~~~tl~ 65 (80)
T PF11543_consen 2 ASSMILRVRSKDGMKRIEV-SPSSTLSDLKEKISEQLSIPDS---------------SQSLSKDRNNKEELKSSDSKTLS 65 (80)
T ss_dssp ----EEEEE-SSEEEEEEE--TTSBHHHHHHHHHHHS---TT---------------T---BSSGGGGGCSSS-TT-CCC
T ss_pred CccEEEEEECCCCCEEEEc-CCcccHHHHHHHHHHHcCCCCc---------------ceEEEecCCCCcccccCCcCCHH
Confidence 3579999944444567788 8899999999999998754333 122322 12 233 24689999
Q ss_pred hhCCCCCCEEEEEe
Q psy2972 121 ELGIESQCEITFVK 134 (143)
Q Consensus 121 dyGI~~g~tl~fv~ 134 (143)
++||+.||-|++..
T Consensus 66 ~lglkHGdmlyL~~ 79 (80)
T PF11543_consen 66 SLGLKHGDMLYLKP 79 (80)
T ss_dssp CT---TT-EEE---
T ss_pred HcCCCCccEEEEec
Confidence 99999999998753
No 46
>KOG4248|consensus
Probab=97.95 E-value=1.1e-05 Score=77.34 Aligned_cols=68 Identities=16% Similarity=0.316 Sum_probs=60.4
Q ss_pred EEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCC
Q psy2972 50 CCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQC 128 (143)
Q Consensus 50 l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~ 128 (143)
|+| ++|...-+|.| ....||.+||..|.+++....+ .+++||.|..| .|++++++||| +|-
T Consensus 5 v~vktld~r~~t~~i-g~q~ti~~~~d~~r~~~ni~s~---------------~qr~i~~grvl-~~~k~vq~~~v-dgk 66 (1143)
T KOG4248|consen 5 VLVKTLDSRTRTFII-GAQMTIKEFKDHIRASVNIPSE---------------KQRLIYQGRVL-QDDKKVQEYNV-DGK 66 (1143)
T ss_pred eeeeecccceeEEEe-chHHHHHHHHHHHHHhcccccc---------------cceeeecceee-ccchhhhhccC-CCe
Confidence 889 99999999999 8889999999999998654332 56999999999 58999999999 999
Q ss_pred EEEEEee
Q psy2972 129 EITFVKR 135 (143)
Q Consensus 129 tl~fv~r 135 (143)
+||+|-|
T Consensus 67 ~~hlver 73 (1143)
T KOG4248|consen 67 VIHLVER 73 (1143)
T ss_pred EEEeecc
Confidence 9999976
No 47
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=97.89 E-value=5.2e-05 Score=56.55 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=52.4
Q ss_pred EEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC-----
Q psy2972 50 CCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI----- 124 (143)
Q Consensus 50 l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI----- 124 (143)
+-|++....+=... .++.||.|||+.|+.-....+ ..++|+-+++.| +|++||.+||+
T Consensus 5 lmIrR~KTTiF~da-kes~tVlelK~~iegI~k~pp---------------~dQrL~kd~qvL-eD~kTL~d~g~t~~~a 67 (119)
T cd01788 5 LMIRRHKTTIFTDA-KESTTVYELKRIVEGILKRPP---------------EDQRLYKDDQLL-DDGKTLGDCGFTSQTA 67 (119)
T ss_pred EEEEecceEEEeec-CCcccHHHHHHHHHHHhcCCh---------------hHheeecCceee-cccccHHHcCcccccc
Confidence 34478788888888 899999999999999764333 356788556555 79999999999
Q ss_pred --CCCCEEEEEee
Q psy2972 125 --ESQCEITFVKR 135 (143)
Q Consensus 125 --~~g~tl~fv~r 135 (143)
++-.+|-+..|
T Consensus 68 kaq~pA~vgLa~r 80 (119)
T cd01788 68 RPQAPATVGLAFR 80 (119)
T ss_pred ccCCCCeEEEEEe
Confidence 55666665554
No 48
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.16 E-value=0.0028 Score=44.21 Aligned_cols=68 Identities=21% Similarity=0.286 Sum_probs=54.3
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeC----Ccccccccchhhhh
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFD----GIKLTNEKSLLSEL 122 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~----gkkL~~d~~tL~dy 122 (143)
++|+| ...+..+.+.| .+..+|..+|+.|.+.. + ...+++|.|. ..+|..+..+|++|
T Consensus 1 iqVtV~q~g~~dl~l~v-nPy~pI~k~K~kI~~~~-------~---------~~g~qrLsfQepgg~rqlL~s~~sLA~y 63 (80)
T cd01811 1 IQVTVEQTGYSDWILRV-NPYSPIRKIKEKIRRSR-------N---------CSGLQRLSFQEPGGERQLLSSRKSLADY 63 (80)
T ss_pred CEEEeeecCCCceEEEe-CCcchHHHHHHHHHHhh-------C---------cccceEEEeecCCcccccccccccHhhh
Confidence 47899 78888899999 88899999999999842 2 2358899993 34677889999999
Q ss_pred CCCCCCEEEE
Q psy2972 123 GIESQCEITF 132 (143)
Q Consensus 123 GI~~g~tl~f 132 (143)
||=..-.|.+
T Consensus 64 GiFs~~~i~l 73 (80)
T cd01811 64 GIFSKTNICL 73 (80)
T ss_pred cceeccEEEE
Confidence 9977665554
No 49
>KOG1769|consensus
Probab=97.14 E-value=0.0052 Score=44.73 Aligned_cols=76 Identities=25% Similarity=0.341 Sum_probs=62.5
Q ss_pred CCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhC
Q psy2972 45 GQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELG 123 (143)
Q Consensus 45 g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyG 123 (143)
+.-++|.| -.+++..-+.| ...++..-|.++..+ |+|. | |++|+..|+|+++ .++.|=.+++
T Consensus 18 ~~hi~LKV~gqd~~~~~Fki-kr~t~LkKLM~aYc~-------r~Gl----~----~~s~RFlFdG~rI-~~~~TP~~L~ 80 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKI-KRHTPLKKLMKAYCE-------RQGL----S----MNSLRFLFDGQRI-RETHTPADLE 80 (99)
T ss_pred cceEEEEEecCCCCEEEEEe-ecCChHHHHHHHHHH-------HcCC----c----cceEEEEECCcCc-CCCCChhhhC
Confidence 45578888 66788889999 888888888877766 6774 4 6899999999999 5788999999
Q ss_pred CCCCCEEEEEeeec
Q psy2972 124 IESQCEITFVKRLK 137 (143)
Q Consensus 124 I~~g~tl~fv~rlr 137 (143)
+++||+|-++...-
T Consensus 81 mEd~D~Iev~~~q~ 94 (99)
T KOG1769|consen 81 MEDGDEIEVVQEQT 94 (99)
T ss_pred CcCCcEEEEEeecc
Confidence 99999998876543
No 50
>KOG1639|consensus
Probab=97.07 E-value=0.0014 Score=54.97 Aligned_cols=75 Identities=17% Similarity=0.137 Sum_probs=54.8
Q ss_pred EEEEE-EeC-CceEEEEecCCCCcHHHHHHHHHHHH-hHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 48 IMCCI-QAD-NKKFDIVISPKNTRVSDLKRTIERQI-TMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 48 m~l~V-k~~-g~~~~V~V~~~~aTV~dLK~aI~~~~-~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
|.|++ +++ |-.+....++..+|+.|+++++..+- ...+.|+. .+++....|+.|. |+.+|++||.
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r-----------~tlr~e~kgkpl~-~~s~l~e~~~ 68 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIR-----------LTLRVEPKGKPLI-DNSKLQEYGD 68 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchh-----------heeeccCCCcccc-chhHHHHhcc
Confidence 67888 555 45677566578899999998877653 34443332 2556777899995 7888999999
Q ss_pred CCCCEEEEEe
Q psy2972 125 ESQCEITFVK 134 (143)
Q Consensus 125 ~~g~tl~fv~ 134 (143)
.+|+++.++.
T Consensus 69 ~s~~~i~vKD 78 (297)
T KOG1639|consen 69 GSGATIYVKD 78 (297)
T ss_pred CCCCEEEEec
Confidence 9999988763
No 51
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.42 E-value=0.032 Score=37.62 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=56.6
Q ss_pred cCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEe--eCCccccccc-chh
Q psy2972 44 HGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLS--FDGIKLTNEK-SLL 119 (143)
Q Consensus 44 ~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Li--f~gkkL~~d~-~tL 119 (143)
.....+|.| --||+.+.-.. ..++||.+|..-|......... ..|.|+ |-.+.+.+++ .||
T Consensus 3 ~~~~~~I~vRlpdG~~l~~~F-~~~~tl~~l~~~v~~~~~~~~~--------------~~f~L~~~~Pr~~l~~~~~~tl 67 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQRRF-PKSDTLQDLYDFVESQLFSPEE--------------SDFELITAFPRRELTDEDSKTL 67 (82)
T ss_dssp TSSEEEEEEEETTSTEEEEEE-ETTSBHHHHHHHHHHHHHCTTT--------------SSEEEEESSSTEECCSTTTSBT
T ss_pred CCCEEEEEEECCCCCEEEEEE-CCcchHHHHHHHHHHhcCCCCC--------------ccEEEEeCCCCcCCCccccccH
Confidence 345678888 55589999999 8999999999999886421110 136664 5567776666 899
Q ss_pred hhhCCCCCCEEEEE
Q psy2972 120 SELGIESQCEITFV 133 (143)
Q Consensus 120 ~dyGI~~g~tl~fv 133 (143)
.+.|+.++++|++.
T Consensus 68 ~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 68 EEAGLLPSATLIVE 81 (82)
T ss_dssp CCCTTSSCEEEEEE
T ss_pred HHhcCCCCeEEEEE
Confidence 99999999999875
No 52
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.37 E-value=0.019 Score=40.13 Aligned_cols=72 Identities=13% Similarity=0.180 Sum_probs=50.1
Q ss_pred cEEEEE-Ee--CCceEEEEecCCCCcHHHHHHHHHHHHh-HhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 47 SIMCCI-QA--DNKKFDIVISPKNTRVSDLKRTIERQIT-MQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 47 am~l~V-k~--~g~~~~V~V~~~~aTV~dLK~aI~~~~~-~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
-|+|+| -. .|+.+++.+ +.--++..|=..+-+... .+..||| .+.+....++-| .++..|.+|
T Consensus 4 ~ikVTvD~t~y~g~~yDLrl-~d~~pikklIdivwe~~kis~~~reg-----------~~Ikv~nKa~ll-sgd~kL~d~ 70 (81)
T COG5417 4 HIKVTVDFTNYNGGTYDLRL-PDYLPIKKLIDIVWESLKISIFDREG-----------TQIKVMNKAQLL-SGDDKLIDY 70 (81)
T ss_pred eEEEEEEeEecCCceEEEec-cccchHHHHHHHHHHHhhccccccCC-----------CEEEEeccceEe-cCCceEEec
Confidence 467777 33 389999999 777787776665555443 2345665 244555556555 688999999
Q ss_pred CCCCCCEEE
Q psy2972 123 GIESQCEIT 131 (143)
Q Consensus 123 GI~~g~tl~ 131 (143)
||.|||-+-
T Consensus 71 ~IadGD~Le 79 (81)
T COG5417 71 QIADGDILE 79 (81)
T ss_pred cccCCCEEE
Confidence 999999874
No 53
>KOG0006|consensus
Probab=96.18 E-value=0.0076 Score=52.39 Aligned_cols=58 Identities=16% Similarity=0.383 Sum_probs=47.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEE
Q psy2972 59 FDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFV 133 (143)
Q Consensus 59 ~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv 133 (143)
++|.| ..+..|.+||+.++. |+|.+. .+...||.||.|. |+.+++++.+.--+.+|.+
T Consensus 16 l~v~v-~~~t~I~~lke~Vak-------~~gvp~--------D~L~viFaGKeLs-~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 16 LPVEV-DSDTSIFQLKEVVAK-------RQGVPA--------DQLRVIFAGKELS-NDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred eeEEE-ecCCCHHHHHHHHHH-------hhCCCh--------hheEEEEeccccc-cCceeecccccccchhhhh
Confidence 99999 888899999999998 467654 5889999999995 7889997766666666665
No 54
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.07 E-value=0.03 Score=37.60 Aligned_cols=63 Identities=11% Similarity=0.204 Sum_probs=42.2
Q ss_pred EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEE
Q psy2972 53 QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITF 132 (143)
Q Consensus 53 k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~f 132 (143)
.-+++.+.|.| .++.|+.|+=+..-.+|.+.+. +|.|.|+++.| |-.-.++-.|+-||+.|.+
T Consensus 3 ~~~~rr~~vkv-tp~~~l~~VL~eac~k~~l~~~---------------~~~L~h~~k~l-dlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKV-TPNTTLNQVLEEACKKFGLDPS---------------SYDLKHNNKPL-DLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE----TTSBHHHHHHHHHHHTT--GG---------------G-EEEETTEEE-SSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEE-CCCCCHHHHHHHHHHHcCCCcc---------------ceEEEECCEEe-ccccceeecCCCCCCEEeC
Confidence 45688999999 8889999998888888765554 45899999988 6789999999999998864
No 55
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=95.91 E-value=0.036 Score=43.58 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=54.3
Q ss_pred EEEEE-EeCC----ceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEee-CCcccc-cccchhh
Q psy2972 48 IMCCI-QADN----KKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSF-DGIKLT-NEKSLLS 120 (143)
Q Consensus 48 m~l~V-k~~g----~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif-~gkkL~-~d~~tL~ 120 (143)
|+|.| ..+| ..+.+.+ ++.+||.+|+..|.... +.+. -.++.|.+ +|.+|. .++..+.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~l-p~~ttv~dL~~~l~~~~-------~~~~-------~~~~~L~~~~n~~l~~~~~~~~s 65 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSL-PSTTTVSDLKDRLSERL-------PIPS-------SSQLYLTTNSNGQLSPSSDIPLS 65 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeC-CCCCcHHHHHHHHHhhc-------CCCc-------cceeEEEEeCCCeeCCCccccHH
Confidence 67999 9999 6899999 88899999999999964 2211 01244555 466663 3556667
Q ss_pred hhCCCCCC----EEEEEeeeccc
Q psy2972 121 ELGIESQC----EITFVKRLKDK 139 (143)
Q Consensus 121 dyGI~~g~----tl~fv~rlr~k 139 (143)
++.-.+++ ++++..+|+|=
T Consensus 66 ~l~~~~~~~~~~~l~l~~rl~GG 88 (162)
T PF13019_consen 66 SLLSSSQDSDFITLRLSLRLRGG 88 (162)
T ss_pred hhccCcCCCCceEEEEEEeccCC
Confidence 66655554 78888898874
No 56
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.60 E-value=0.03 Score=40.26 Aligned_cols=49 Identities=24% Similarity=0.344 Sum_probs=34.0
Q ss_pred EEEEec-CCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhh
Q psy2972 59 FDIVIS-PKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSE 121 (143)
Q Consensus 59 ~~V~V~-~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~d 121 (143)
+++.|+ +++.||..||+.|.+...-... + +.++|||+|+-|. |...|..
T Consensus 14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s--~-----------~rLRlI~~Gr~L~-d~t~l~~ 63 (97)
T PF10302_consen 14 LPLDIPSPNTTTVAWLKQLIRERLPPEPS--R-----------RRLRLIYAGRLLN-DHTDLSS 63 (97)
T ss_pred ceeecCCCCcccHHHHHHHHHhhcCCCCc--c-----------ccEEeeecCcccC-ccchhhh
Confidence 555551 3779999999999997411111 1 4789999999985 6655544
No 57
>KOG1872|consensus
Probab=95.49 E-value=0.028 Score=50.53 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=57.9
Q ss_pred EEEEEEeCCceEEEE-ecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCIQADNKKFDIV-ISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~Vk~~g~~~~V~-V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
..|.|+-.|+.++++ + ..++|+..||.++.......|+|| .+.+.|..+ .|+-.+...+|++
T Consensus 4 ~~v~VKW~gk~y~v~~l-~~d~t~~vlKaqlf~LTgV~PeRQ---------------Kv~vKGg~a-~dd~~~~al~iKp 66 (473)
T KOG1872|consen 4 DTVIVKWGGKKYPVETL-STDETPSVLKAQLFALTGVPPERQ---------------KVMVKGGLA-KDDVDWGALQIKP 66 (473)
T ss_pred ceEeeeecCccccceec-cCCCchHHHHHHHHHhcCCCccce---------------eEEEecccc-cccccccccccCC
Confidence 456668889999999 7 888999999999999876666665 578888787 5677888999999
Q ss_pred CCEEEEE
Q psy2972 127 QCEITFV 133 (143)
Q Consensus 127 g~tl~fv 133 (143)
|.+|++.
T Consensus 67 n~~lmMm 73 (473)
T KOG1872|consen 67 NETLMMM 73 (473)
T ss_pred CCEEEee
Confidence 9999975
No 58
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.42 E-value=0.076 Score=36.51 Aligned_cols=68 Identities=22% Similarity=0.240 Sum_probs=50.9
Q ss_pred cEEEEEE-eCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEe--eCCcccccccchhhhhC
Q psy2972 47 SIMCCIQ-ADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLS--FDGIKLTNEKSLLSELG 123 (143)
Q Consensus 47 am~l~Vk-~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Li--f~gkkL~~d~~tL~dyG 123 (143)
..+|-|| -||+.+.-.+ ..++||.+|.+.|..... ..++ ..|.|+ |=.+.|.+++.||++.|
T Consensus 4 ~t~iqiRlpdG~r~~~rF-~~~~tv~~l~~~v~~~~~---~~~~-----------~~f~L~t~fP~k~l~~~~~Tl~eag 68 (79)
T cd01770 4 TTSIQIRLADGKRLVQKF-NSSHRVSDVRDFIVNARP---EFAA-----------RPFTLMTAFPVKELSDESLTLKEAN 68 (79)
T ss_pred eeEEEEECCCCCEEEEEe-CCCCcHHHHHHHHHHhCC---CCCC-----------CCEEEecCCCCcccCCCCCcHHHCC
Confidence 4567774 4589999999 888999999999997521 1011 356665 66888988899999999
Q ss_pred CCCCCE
Q psy2972 124 IESQCE 129 (143)
Q Consensus 124 I~~g~t 129 (143)
+.+...
T Consensus 69 L~~s~v 74 (79)
T cd01770 69 LLNAVI 74 (79)
T ss_pred CcCcEE
Confidence 997443
No 59
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.18 E-value=0.04 Score=37.77 Aligned_cols=55 Identities=22% Similarity=0.433 Sum_probs=43.0
Q ss_pred CCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh-CCCCCCEEEEEe
Q psy2972 65 PKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL-GIESQCEITFVK 134 (143)
Q Consensus 65 ~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy-GI~~g~tl~fv~ 134 (143)
.++++|.|+++.+.... +. .+ -.+|.|.++|+.| ++...|.++ |+++|+++.++.
T Consensus 2 ~~~d~v~dvrq~L~~~~------~t--~~------~Tn~~L~~~g~~L-~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 2 SPTDTVQDVRQVLAESP------ET--CY------LTNFSLEHNGQRL-DDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred ChhhHHHHHHHHHHhCc------cc--cc------eeEEEEEECCCcc-CCchhhhhhhCCCCCcEEEEEe
Confidence 46789999999999852 11 11 2488999999999 678888775 699999999885
No 60
>KOG4495|consensus
Probab=95.04 E-value=0.033 Score=40.73 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=45.6
Q ss_pred EEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEee-CCcccccccchhhhhCCC
Q psy2972 48 IMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSF-DGIKLTNEKSLLSELGIE 125 (143)
Q Consensus 48 m~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif-~gkkL~~d~~tL~dyGI~ 125 (143)
|-+.|++..+.+=+.. .++.||.|||..++.-... | .++++|.- +..+|.+|.++|.++|..
T Consensus 3 ~f~~VrR~kttif~da-~es~tV~elK~~l~gi~~~-P--------------vn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDA-KESSTVFELKRKLEGILKR-P--------------VNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeeecceeEEeec-CccccHHHHHHHHHHHHhC-C--------------CcchheeecCHHHHhhccchhhhcccc
Confidence 3345577788888888 8899999999999886421 1 13556665 555777899999999764
No 61
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.2 Score=36.28 Aligned_cols=69 Identities=25% Similarity=0.333 Sum_probs=55.1
Q ss_pred cEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCC
Q psy2972 47 SIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIE 125 (143)
Q Consensus 47 am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~ 125 (143)
-+.+.| -.+|..+=+.| ..+.|...|=.|+.+ |+|-.. ..++..|+|+.+ +-+.|=.++++.
T Consensus 24 hinLkvv~qd~telfFki-KktT~f~klm~af~~-------rqGK~m--------~slRfL~dG~rI-~~dqTP~dldmE 86 (103)
T COG5227 24 HINLKVVDQDGTELFFKI-KKTTTFKKLMDAFSR-------RQGKNM--------SSLRFLFDGKRI-DLDQTPGDLDME 86 (103)
T ss_pred ccceEEecCCCCEEEEEE-eccchHHHHHHHHHH-------HhCcCc--------ceeEEEEcceec-CCCCChhhcCCc
Confidence 466788 78899988999 888888888777776 566422 488999999999 467899999999
Q ss_pred CCCEEEE
Q psy2972 126 SQCEITF 132 (143)
Q Consensus 126 ~g~tl~f 132 (143)
+|++|-.
T Consensus 87 dnd~iEa 93 (103)
T COG5227 87 DNDEIEA 93 (103)
T ss_pred cchHHHH
Confidence 9998743
No 62
>KOG3493|consensus
Probab=93.80 E-value=0.03 Score=38.21 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=46.9
Q ss_pred EEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCC
Q psy2972 49 MCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQ 127 (143)
Q Consensus 49 ~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g 127 (143)
.+.+ -+=|++.-|.. .+++||.|+|+.|..+..-.+++- .|---+..+ +|.-+|++|-|.+|
T Consensus 3 ev~~nDrLGKKVRvKC-n~dDtiGD~KKliaaQtGT~~~ki---------------vl~k~~~i~-kd~I~L~dyeihdg 65 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKC-NTDDTIGDLKKLIAAQTGTRPEKI---------------VLKKWYTIF-KDHITLSDYEIHDG 65 (73)
T ss_pred eehhhhhcCceEEEEe-CCcccccCHHHHHHHhhCCChhHh---------------HHHhhhhhh-hcccceeeEEeccC
Confidence 4455 44489999999 888999999999999864433321 121112233 67889999999999
Q ss_pred CEEEE
Q psy2972 128 CEITF 132 (143)
Q Consensus 128 ~tl~f 132 (143)
..+-+
T Consensus 66 ~~lel 70 (73)
T KOG3493|consen 66 MNLEL 70 (73)
T ss_pred ccEEE
Confidence 87653
No 63
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=92.93 E-value=0.66 Score=30.67 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=47.5
Q ss_pred EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEee--C--C-cccccccchhhhhCCCC-
Q psy2972 53 QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSF--D--G-IKLTNEKSLLSELGIES- 126 (143)
Q Consensus 53 k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif--~--g-kkL~~d~~tL~dyGI~~- 126 (143)
-+||+..++.| .+++|+.||=..|..+..+... .-|.|.| . | ..-.+.+++|.+.+.++
T Consensus 3 llD~~~~~~~v-~~~~t~~~l~~~v~~~l~l~e~--------------~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~ 67 (80)
T PF09379_consen 3 LLDGTTKTFEV-DPKTTGQDLLEQVCDKLGLKEK--------------EYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNN 67 (80)
T ss_dssp ESSEEEEEEEE-ETTSBHHHHHHHHHHHHTTSSG--------------GGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSS
T ss_pred CcCCCcEEEEE-cCCCcHHHHHHHHHHHcCCCCc--------------cEEEEEEeecCCCcceeccCcccHHHHcCCCC
Confidence 47899999999 8999999999999998765321 2567888 2 2 12235678999998883
Q ss_pred -CCEEEEEe
Q psy2972 127 -QCEITFVK 134 (143)
Q Consensus 127 -g~tl~fv~ 134 (143)
..+++|..
T Consensus 68 ~~~~l~frv 76 (80)
T PF09379_consen 68 PPFTLYFRV 76 (80)
T ss_dssp SSEEEEEEE
T ss_pred CCEEEEEEE
Confidence 44455544
No 64
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=92.32 E-value=1.6 Score=29.12 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=48.0
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEe--eCCccccc--ccchhhhh
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLS--FDGIKLTN--EKSLLSEL 122 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Li--f~gkkL~~--d~~tL~dy 122 (143)
.+|.| --+|+.+.... ..++||.+|.+.|.... .. +..|.|+ |-.+.+.+ .+.||++.
T Consensus 3 t~i~iRlpdG~~~~~~F-~~~~tl~~l~~fv~~~~--------~~--------~~~f~L~t~~Pr~~~~~~~~~~TL~e~ 65 (77)
T cd01767 3 TKIQIRLPDGKRLEQRF-NSTHKLSDVRDFVESNG--------PP--------AEPFTLMTSFPRRVLTDLDYELTLQEA 65 (77)
T ss_pred EEEEEEcCCCCEEEEEe-CCCCCHHHHHHHHHHcC--------CC--------CCCEEEEeCCCCccCCCCCccCcHHHc
Confidence 46777 44589999999 88999999999998742 10 2345554 45667755 68999999
Q ss_pred CCCCCCEEEE
Q psy2972 123 GIESQCEITF 132 (143)
Q Consensus 123 GI~~g~tl~f 132 (143)
|+.+ +.+-+
T Consensus 66 gL~~-s~~~~ 74 (77)
T cd01767 66 GLVN-EVVFQ 74 (77)
T ss_pred CCcc-ceEEE
Confidence 9994 44433
No 65
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=92.26 E-value=1.6 Score=29.38 Aligned_cols=73 Identities=12% Similarity=0.184 Sum_probs=51.5
Q ss_pred CCcEEEEEE-eCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEE--eeCCcccccc--cchh
Q psy2972 45 GQSIMCCIQ-ADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWL--SFDGIKLTNE--KSLL 119 (143)
Q Consensus 45 g~am~l~Vk-~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~L--if~gkkL~~d--~~tL 119 (143)
+...+|.|| -+|+.+.-.. ..++||.+|.+.|.... ... ...|.| .|-.+.+.++ +.||
T Consensus 2 ~~~~~I~iRlPdG~ri~~~F-~~~~tl~~v~~~v~~~~------~~~---------~~~f~L~t~~Prk~l~~~d~~~tL 65 (80)
T smart00166 2 SDQCRLQIRLPDGSRLVRRF-PSSDTLRTVYEFVSAAL------TDG---------NDPFTLNSPFPRRTFTKDDYSKTL 65 (80)
T ss_pred CCeEEEEEEcCCCCEEEEEe-CCCCcHHHHHHHHHHcc------cCC---------CCCEEEEeCCCCcCCccccccCCH
Confidence 345778884 5589999999 88999999999994421 111 123444 4556667554 5899
Q ss_pred hhhCCCCCCEEEEE
Q psy2972 120 SELGIESQCEITFV 133 (143)
Q Consensus 120 ~dyGI~~g~tl~fv 133 (143)
.+.|+-++++|.+.
T Consensus 66 ~e~gL~p~~~l~v~ 79 (80)
T smart00166 66 LELALLPSSTLVLE 79 (80)
T ss_pred HHCCCCCceEEEEe
Confidence 99999998888653
No 66
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=91.92 E-value=0.92 Score=40.52 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=58.8
Q ss_pred EEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEee-CCcccccccchhhhhCCCC
Q psy2972 48 IMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSF-DGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif-~gkkL~~d~~tL~dyGI~~ 126 (143)
-+|+|-.+.+..|+.+ |.+..|.||=-.+-+...-...-.+.+ ..+.|.- +|..| +.+.+|.+.||.|
T Consensus 3 ~RVtV~~~~~~~DlaL-Pa~~PvaellP~ll~~~~~~~~~~~~~---------~~w~L~r~gG~pL-~~~~sL~~~gV~D 71 (452)
T TIGR02958 3 CRVTVLAGRRAVDVAL-PADVPVAELIPDLVDLLDDRGAAELGA---------VRWALARAGGSPL-DPDASLAEAGVRD 71 (452)
T ss_pred EEEEEeeCCeeeeeec-CCCCcHHHHHHHHHHHhCcccccCCCC---------cceEEecCCCCCC-CCCCCHHHcCCCC
Confidence 4678866677899999 888999999999999764221111221 2345555 56777 6799999999999
Q ss_pred CCEEEEEeeec
Q psy2972 127 QCEITFVKRLK 137 (143)
Q Consensus 127 g~tl~fv~rlr 137 (143)
|+.+++..+-.
T Consensus 72 G~~L~L~p~~~ 82 (452)
T TIGR02958 72 GELLVLVPASA 82 (452)
T ss_pred CCeEEEeeCCC
Confidence 99999997644
No 67
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=91.69 E-value=2 Score=29.18 Aligned_cols=72 Identities=13% Similarity=0.157 Sum_probs=50.9
Q ss_pred cEEEEEE-eCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccc--cchhhhhC
Q psy2972 47 SIMCCIQ-ADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNE--KSLLSELG 123 (143)
Q Consensus 47 am~l~Vk-~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d--~~tL~dyG 123 (143)
..+|.|| -+|+.+.-.. +.++|+.+|.+.|+... ..+ . + =.+...|-.+.+.++ +.||.+.|
T Consensus 4 ~~~i~iRlp~G~~~~~~F-~~~~tl~~v~~fV~~~~------~~~-~--~-----f~L~t~fPrk~~~~~d~~~TL~elg 68 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTF-KAREQLAAVRLFVELNT------GNG-G--P-----FTLMTPFPRKVFTEDDMEKPLQELG 68 (79)
T ss_pred EEEEEEECCCCCEEEEEe-CCCChHHHHHHHHHHcC------CCC-C--C-----EEEEeCCCCeECCcccccCCHHHCC
Confidence 4567774 5699999999 88899999999998741 110 0 0 023444556677533 68999999
Q ss_pred CCCCCEEEEE
Q psy2972 124 IESQCEITFV 133 (143)
Q Consensus 124 I~~g~tl~fv 133 (143)
+.+..+|.+-
T Consensus 69 L~Psa~L~v~ 78 (79)
T cd01772 69 LVPSAVLIVT 78 (79)
T ss_pred CCCceEEEEe
Confidence 9999888764
No 68
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=91.53 E-value=0.79 Score=30.15 Aligned_cols=53 Identities=13% Similarity=0.377 Sum_probs=38.7
Q ss_pred EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEE
Q psy2972 53 QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITF 132 (143)
Q Consensus 53 k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~f 132 (143)
+.+|+.++ + ..++|+.+||+.+... . . .++++|=+..+ ++-+++||+|.|
T Consensus 4 ~vN~k~~~--~-~~~~tl~~lr~~~k~~--------~------------D-I~I~NGF~~~~------d~~L~e~D~v~~ 53 (57)
T PF14453_consen 4 KVNEKEIE--T-EENTTLFELRKESKPD--------A------------D-IVILNGFPTKE------DIELKEGDEVFL 53 (57)
T ss_pred EECCEEEE--c-CCCcCHHHHHHhhCCC--------C------------C-EEEEcCcccCC------ccccCCCCEEEE
Confidence 34666444 4 5668999999988762 1 1 67999988753 456899999999
Q ss_pred Eee
Q psy2972 133 VKR 135 (143)
Q Consensus 133 v~r 135 (143)
.+|
T Consensus 54 Ikk 56 (57)
T PF14453_consen 54 IKK 56 (57)
T ss_pred EeC
Confidence 875
No 69
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=90.88 E-value=3.3 Score=31.37 Aligned_cols=76 Identities=13% Similarity=0.229 Sum_probs=55.8
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCC------cccccccch
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDG------IKLTNEKSL 118 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~g------kkL~~d~~t 118 (143)
+.+.+.| -.||+...|.+ .+++|+.|+-..+.+++.+. -+.-|.|.+.. .-| +...+
T Consensus 2 ~~~~~~V~l~dg~~~~~~~-~~~~t~~ev~~~v~~~~~l~--------------~~~~F~L~~~~~~~~~~~~l-~~~~~ 65 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEV-DSSTTAEELLETVCRKLGIR--------------ESEYFGLQFEDPDEDLSHWL-DPAKT 65 (207)
T ss_pred CcEEEEEEecCCCEEEEEE-CCCCCHHHHHHHHHHHhCCC--------------ccceeEEEEEcCCCCcCeeC-CCccC
Confidence 4578889 89999999999 88899999999999986441 13466777632 123 45678
Q ss_pred hhhhCCC-CCCEEEEEeeec
Q psy2972 119 LSELGIE-SQCEITFVKRLK 137 (143)
Q Consensus 119 L~dyGI~-~g~tl~fv~rlr 137 (143)
|.+...+ ....++|..|.-
T Consensus 66 l~~~~~~~~~~~l~fr~r~~ 85 (207)
T smart00295 66 LLDQDVKSEPLTLYFRVKFY 85 (207)
T ss_pred HHHhcCCCCCcEEEEEEEEc
Confidence 8888766 456778877754
No 70
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=90.04 E-value=2.2 Score=28.68 Aligned_cols=62 Identities=8% Similarity=0.202 Sum_probs=39.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHHh-HhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEEee
Q psy2972 57 KKFDIVISPKNTRVSDLKRTIERQIT-MQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVKR 135 (143)
Q Consensus 57 ~~~~V~V~~~~aTV~dLK~aI~~~~~-~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~r 135 (143)
....+++ +..+||.+|.+.+...+. +...+. ...+.-+|+.. + .++=+++||+|-|..-
T Consensus 19 ~~~~~~~-~~~~tv~~L~~~l~~~~p~l~~~~~-------------~~~vavN~~~v-~-----~~~~l~dgDeVai~Pp 78 (82)
T PLN02799 19 SDMTLEL-PAGSTTADCLAELVAKFPSLEEVRS-------------CCVLALNEEYT-T-----ESAALKDGDELAIIPP 78 (82)
T ss_pred CeEEEEC-CCCCcHHHHHHHHHHHChhHHHHhh-------------CcEEEECCEEc-C-----CCcCcCCCCEEEEeCC
Confidence 4577888 788999999999987652 111111 11233455543 2 3445899999999765
Q ss_pred ecc
Q psy2972 136 LKD 138 (143)
Q Consensus 136 lr~ 138 (143)
..|
T Consensus 79 vsG 81 (82)
T PLN02799 79 ISG 81 (82)
T ss_pred CCC
Confidence 443
No 71
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.95 E-value=4.4 Score=28.14 Aligned_cols=70 Identities=7% Similarity=0.039 Sum_probs=50.7
Q ss_pred CcEEEEEE-eCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCC--cccc-------cc
Q psy2972 46 QSIMCCIQ-ADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDG--IKLT-------NE 115 (143)
Q Consensus 46 ~am~l~Vk-~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~g--kkL~-------~d 115 (143)
.+.+|-|| -+|+.+.-.. ..+.||++|...|... .. -+..|.|+++= +.+. +.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF-~~~~tl~~l~~fv~~~-------~~---------~~~~f~L~t~FPrr~~~~~~~~~~~~ 65 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRF-LFTQSLRVIHDFLFSL-------KE---------TPEKFQIVTNFPRRVLPCLPSEGDPP 65 (85)
T ss_pred ceEEEEEECCCCCEEEEEe-CCCCcHHHHHHHHHhC-------CC---------CCCcEEEecCCCCccccccccccCcC
Confidence 45778884 5599999999 8889999999999531 11 13567777653 5554 34
Q ss_pred cchhhhhCCCCCCEEEE
Q psy2972 116 KSLLSELGIESQCEITF 132 (143)
Q Consensus 116 ~~tL~dyGI~~g~tl~f 132 (143)
..||++.|+.+...|-+
T Consensus 66 ~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 66 PPTLLEAGLSNSEVLFV 82 (85)
T ss_pred CCCHHHcCCCCccEEEE
Confidence 67999999998776654
No 72
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=89.94 E-value=2.3 Score=30.25 Aligned_cols=68 Identities=12% Similarity=0.264 Sum_probs=42.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCC-cccccccchhhhhCCCCCCEEEEEe
Q psy2972 56 NKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDG-IKLTNEKSLLSELGIESQCEITFVK 134 (143)
Q Consensus 56 g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~g-kkL~~d~~tL~dyGI~~g~tl~fv~ 134 (143)
.+..+..+ ...+||..+.+.+.+.|.. ++|- ++|+.+ .-++ ..|.+.+.|+.+.||.+|..|-+-.
T Consensus 13 ~~~~t~~F-Sk~DTI~~v~~~~rklf~i--~~E~--------RLW~~~--~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~ 79 (88)
T PF14836_consen 13 QSVLTKQF-SKTDTIGFVEKEMRKLFNI--QEET--------RLWNKY--SENSYELLNNPEITVEDAGLYDGQVVLIEE 79 (88)
T ss_dssp CEEEEEEE--TTSBHHHHHHHHHHHCT---TS-E--------EEEEEC--TTTCEEEE--TTSBTTTTT--TTEEEEEEE
T ss_pred ccHhHhhc-cccChHHHHHHHHHHHhCC--Cccc--------eehhcc--CCcchhhhCCCCccHHHccCcCCCEEEEEe
Confidence 45678888 8889999999999999977 3332 233332 1112 3565567899999999999888766
Q ss_pred ee
Q psy2972 135 RL 136 (143)
Q Consensus 135 rl 136 (143)
|-
T Consensus 80 rn 81 (88)
T PF14836_consen 80 RN 81 (88)
T ss_dssp --
T ss_pred ec
Confidence 54
No 73
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=89.76 E-value=2.4 Score=28.77 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=42.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHHhH-hH---hhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEE
Q psy2972 57 KKFDIVISPKNTRVSDLKRTIERQITM-QM---KRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITF 132 (143)
Q Consensus 57 ~~~~V~V~~~~aTV~dLK~aI~~~~~~-~~---~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~f 132 (143)
....|.+ + .+||.||.+++.+.+.- .. ..++. +..+....-+|+....+.. .-+++||+|.|
T Consensus 16 ~~~~v~~-~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~--------~~~~~~v~vN~~~v~~~~~----~~l~dgdev~i 81 (88)
T TIGR01687 16 KSEEIEI-E-GKTVGDLLNELMARYPKEFSELFKEGLG--------LVPNVIILVNGRNVDWGLG----TELKDGDVVAI 81 (88)
T ss_pred ceEEEEe-C-CCCHHHHHHHHHHHCcHHHHHhCccCCc--------ccccEEEEECCEecCccCC----CCCCCCCEEEE
Confidence 3467777 5 78999999999987631 11 00111 1123344456765533221 56999999999
Q ss_pred Eeeecc
Q psy2972 133 VKRLKD 138 (143)
Q Consensus 133 v~rlr~ 138 (143)
..-+.|
T Consensus 82 ~PpvsG 87 (88)
T TIGR01687 82 FPPVSG 87 (88)
T ss_pred eCCCcC
Confidence 876654
No 74
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=88.10 E-value=3 Score=27.35 Aligned_cols=63 Identities=10% Similarity=0.188 Sum_probs=40.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEEeeec
Q psy2972 58 KFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVKRLK 137 (143)
Q Consensus 58 ~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~rlr 137 (143)
...+.+ ++..||.||.+.+...+... .+. .+..+...-+|+... .++-+++||+|.|..-+-
T Consensus 17 ~~~~~~-~~~~tv~~ll~~l~~~~~~~---~~~--------~~~~~~v~vNg~~v~------~~~~l~~gD~v~i~ppv~ 78 (80)
T cd00754 17 EEELEL-PEGATVGELLDALEARYPGL---LEE--------LLARVRIAVNGEYVR------LDTPLKDGDEVAIIPPVS 78 (80)
T ss_pred eEEEEC-CCCCcHHHHHHHHHHHCchH---HHh--------hhhcEEEEECCeEcC------CCcccCCCCEEEEeCCCC
Confidence 367777 66899999999999875321 010 012233444666653 345699999999987654
Q ss_pred c
Q psy2972 138 D 138 (143)
Q Consensus 138 ~ 138 (143)
|
T Consensus 79 G 79 (80)
T cd00754 79 G 79 (80)
T ss_pred C
Confidence 4
No 75
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=87.68 E-value=2.1 Score=39.43 Aligned_cols=90 Identities=9% Similarity=0.216 Sum_probs=48.8
Q ss_pred CcEEEEE-EeC--CceEEEEecCCCCcHHHHHHHHHHHHh----HhHhhcccccccccccccceEEEeeCC---cccccc
Q psy2972 46 QSIMCCI-QAD--NKKFDIVISPKNTRVSDLKRTIERQIT----MQMKRKGLSKQISWRHVWKSYWLSFDG---IKLTNE 115 (143)
Q Consensus 46 ~am~l~V-k~~--g~~~~V~V~~~~aTV~dLK~aI~~~~~----~~~~reg~~~~IsW~~vw~~~~Lif~g---kkL~~d 115 (143)
+.++|.| -.+ ...++|.| -+-+||.+.|+.|-+++- +.+-+.-.....-|++==....+..+. .+...+
T Consensus 188 ~~ltl~v~~~~~~~~~i~VkV-LdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~ 266 (539)
T PF08337_consen 188 KTLTLNVVPQEEGSEEIPVKV-LDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGG 266 (539)
T ss_dssp -EEEEEEECTTTSSTCEEEEE-ETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETT
T ss_pred EEEEEEEEecCCCCceEEEEE-EecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCC
Confidence 3588886 333 46699999 888999999999888762 111000011222343321112111110 011100
Q ss_pred ---cchhhhhCCCCCCEEEEEeee
Q psy2972 116 ---KSLLSELGIESQCEITFVKRL 136 (143)
Q Consensus 116 ---~~tL~dyGI~~g~tl~fv~rl 136 (143)
-.||+.|||.||++|-++.+.
T Consensus 267 wkrLNTL~HY~V~dga~vaLv~k~ 290 (539)
T PF08337_consen 267 WKRLNTLAHYKVPDGATVALVPKQ 290 (539)
T ss_dssp EEE--BHHHHT--TTEEEEEEES-
T ss_pred ceEeccHhhcCCCCCceEEEeecc
Confidence 159999999999999999875
No 76
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=86.60 E-value=2.9 Score=25.75 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=42.6
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-E-eCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-Q-ADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k-~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++++||+++|-+|+...+.- +|....+.+ . .++..--+.. -.-.+-.+.++|++..
T Consensus 2 ~v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~a~-V~F~~~~~a~~a~~~l 59 (70)
T PF00076_consen 2 YVGNLPPDVTEEELRDFFSQ-FGKIESIKVMRNSSGKSKGYAF-VEFESEEDAEKALEEL 59 (70)
T ss_dssp EEESETTTSSHHHHHHHHHT-TSTEEEEEEEEETTSSEEEEEE-EEESSHHHHHHHHHHH
T ss_pred EEcCCCCcCCHHHHHHHHHH-hhhcccccccccccccccceEE-EEEcCHHHHHHHHHHc
Confidence 35789999999999999987 998888888 5 3455533333 3457899999999874
No 77
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=86.54 E-value=2.2 Score=32.15 Aligned_cols=63 Identities=32% Similarity=0.511 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeC--C-------------c--cc--ccccchhhhhCCCC
Q psy2972 66 KNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFD--G-------------I--KL--TNEKSLLSELGIES 126 (143)
Q Consensus 66 ~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~--g-------------k--kL--~~d~~tL~dyGI~~ 126 (143)
.+.||.||++.+.+.... +-|.+++-+- --.++.++.. | . .| .+++.+|.++||.|
T Consensus 25 ~~~Tv~~l~~~v~~~I~t---~~~~~Pfrn~--~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~n 99 (122)
T PF10209_consen 25 KDTTVKDLKEQVKQDIKT---RPGLPPFRNV--KYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVEN 99 (122)
T ss_pred ccCcHHHHHHHHHHHHhc---CCCCCCceee--ecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCc
Confidence 368999999999987631 1111111111 1133333331 1 1 22 35789999999999
Q ss_pred CCEEEEE
Q psy2972 127 QCEITFV 133 (143)
Q Consensus 127 g~tl~fv 133 (143)
..+|.|=
T Consensus 100 ETEiSfF 106 (122)
T PF10209_consen 100 ETEISFF 106 (122)
T ss_pred cceeeee
Confidence 9999884
No 78
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=85.91 E-value=5.8 Score=26.64 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=46.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEee------CCcccccccchhh--hhCCCCC
Q psy2972 56 NKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSF------DGIKLTNEKSLLS--ELGIESQ 127 (143)
Q Consensus 56 g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif------~gkkL~~d~~tL~--dyGI~~g 127 (143)
+..-+|.| ..++|..|+=+++.++|.... -|++|+|+- ....|.+++.-+. ......+
T Consensus 12 ~~~kti~V-~~~~t~~~Vi~~~l~k~~l~~-------------~~~~y~L~ev~~~~~~er~L~~~e~pl~~~~~~~~~~ 77 (87)
T cd01768 12 GTYKTLRV-SKDTTAQDVIQQLLKKFGLDD-------------DPEDYALVEVLGDGGLERLLLPDECPLQIQLNAPRQR 77 (87)
T ss_pred ccEEEEEE-CCCCCHHHHHHHHHHHhCCcC-------------CcccEEEEEEECCceEEEEeCCCCChHHHHHhcCCCC
Confidence 77889999 888999999999999985432 145777763 2235655555544 2455667
Q ss_pred CEEEEEeee
Q psy2972 128 CEITFVKRL 136 (143)
Q Consensus 128 ~tl~fv~rl 136 (143)
....|+.|-
T Consensus 78 ~~~~F~lr~ 86 (87)
T cd01768 78 EDLRFLLRK 86 (87)
T ss_pred CcEEEEEec
Confidence 777887764
No 79
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=85.90 E-value=3.8 Score=27.43 Aligned_cols=61 Identities=13% Similarity=0.251 Sum_probs=39.0
Q ss_pred eEEEEecCCC-CcHHHHHHHHHHHHhHhHhhcccccccccccccceEE-EeeCCcccccccchhhhhCCCCCCEEEEEee
Q psy2972 58 KFDIVISPKN-TRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYW-LSFDGIKLTNEKSLLSELGIESQCEITFVKR 135 (143)
Q Consensus 58 ~~~V~V~~~~-aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~-Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~r 135 (143)
...+.+ +.+ +||.+|...+.+.+.- .. + +...+ ..-+|+... + +.-|++||+|.|..-
T Consensus 17 ~~~~~~-~~~~~tv~~L~~~L~~~~p~-l~-~-----------~~~~~~v~vn~~~v~-~-----~~~l~dgDevai~Pp 76 (80)
T TIGR01682 17 EETLEL-PDESTTVGELKEHLAKEGPE-LA-A-----------SRGQVMVAVNEEYVT-D-----DALLNEGDEVAFIPP 76 (80)
T ss_pred eEEEEC-CCCCcCHHHHHHHHHHhCch-hh-h-----------hccceEEEECCEEcC-C-----CcCcCCCCEEEEeCC
Confidence 357788 655 8999999999997530 00 0 11223 333555542 2 567999999999876
Q ss_pred ecc
Q psy2972 136 LKD 138 (143)
Q Consensus 136 lr~ 138 (143)
..|
T Consensus 77 vsG 79 (80)
T TIGR01682 77 VSG 79 (80)
T ss_pred CCC
Confidence 544
No 80
>KOG3206|consensus
Probab=85.49 E-value=1.6 Score=36.02 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=51.3
Q ss_pred EEEEE--EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceE-EEeeCC-----cccccccchh
Q psy2972 48 IMCCI--QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSY-WLSFDG-----IKLTNEKSLL 119 (143)
Q Consensus 48 m~l~V--k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~-~Lif~g-----kkL~~d~~tL 119 (143)
++|.| .+....++... +++.||.+||..++-...-... +. .-.|.| ..|.++++.|
T Consensus 2 v~v~Iss~~~~~~~Ekr~-~~~ltl~q~K~KLe~~~G~~~~---------------~M~l~l~~~~d~~~~~lsn~d~~l 65 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRL-SNSLTLAQFKDKLELLTGTEAE---------------SMELELYDGDDKKVSALSNEDADL 65 (234)
T ss_pred eEEEEecccccchhhhhc-CCcCcHHHHHhhhhhhhCCCcc---------------ceEEEEEcCCCceeeeccCCcccc
Confidence 45666 33333577778 7889999999999987632221 11 233443 4678889999
Q ss_pred hhhCCCCCCEEEEEee
Q psy2972 120 SELGIESQCEITFVKR 135 (143)
Q Consensus 120 ~dyGI~~g~tl~fv~r 135 (143)
..|+..+|.-||++..
T Consensus 66 g~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 66 GFYKVEDGLRIHVIDS 81 (234)
T ss_pred cccCCCCceEEEEEec
Confidence 9999999999999864
No 81
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=85.16 E-value=4.9 Score=26.75 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=46.3
Q ss_pred EEE-EeCCc----eEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEe-eC---C--cccccccch
Q psy2972 50 CCI-QADNK----KFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLS-FD---G--IKLTNEKSL 118 (143)
Q Consensus 50 l~V-k~~g~----~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Li-f~---g--kkL~~d~~t 118 (143)
|.| ..+++ .-.|.| ..++|+.|+=+++-++|.. . . -|.+|+|+ +. | ..|.++..-
T Consensus 5 lrVy~~~~~~~~~~k~i~v-~~~tTa~evi~~~l~k~~l--~--~---------~~~~y~L~~~~~~~~~er~L~~~E~p 70 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKV-SSSTTAREVIEMALEKFGL--A--E---------DPSDYCLVEVEESGGEERPLDDDECP 70 (93)
T ss_dssp EEEEETTSSSCCSEEEEEE-ETTSBHHHHHHHHHHHTTT--S--S---------SGGGEEEEEEECTTTEEEEETTTSBH
T ss_pred EEEEcCCCCCCccEEEEEE-CCCCCHHHHHHHHHHHhCC--C--C---------CCCCEEEEEEEcCCCEEEEcCCCCch
Confidence 445 45555 788888 8889999999999999865 1 1 14688885 32 2 355545444
Q ss_pred hhhhCCC--CCCEEEEEeeec
Q psy2972 119 LSELGIE--SQCEITFVKRLK 137 (143)
Q Consensus 119 L~dyGI~--~g~tl~fv~rlr 137 (143)
+.-..-- ++...+|+.|-+
T Consensus 71 l~i~~~~~~~~~~~~f~lr~~ 91 (93)
T PF00788_consen 71 LQIQLQWPKDSQNSRFVLRRK 91 (93)
T ss_dssp HHHHHTTSSGTTTEEEEEEEC
T ss_pred HHHHHhCccccCceEEEEEEc
Confidence 4333222 224777777654
No 82
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=82.65 E-value=4.8 Score=26.61 Aligned_cols=34 Identities=9% Similarity=0.326 Sum_probs=27.3
Q ss_pred EEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHh
Q psy2972 48 IMCCIQADNKKFDIVISPKNTRVSDLKRTIERQIT 82 (143)
Q Consensus 48 m~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~ 82 (143)
+++.++..|....+.+ +.+.|..+|+.+|..+|.
T Consensus 2 ~~vK~~~~~~~~~~~~-~~~~s~~dL~~~i~~~~~ 35 (81)
T smart00666 2 VDVKLRYGGETRRLSV-PRDISFEDLRSKVAKRFG 35 (81)
T ss_pred ccEEEEECCEEEEEEE-CCCCCHHHHHHHHHHHhC
Confidence 4566666778888888 778899999999999874
No 83
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=82.37 E-value=4.4 Score=26.26 Aligned_cols=64 Identities=11% Similarity=0.158 Sum_probs=43.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEEeeec
Q psy2972 58 KFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVKRLK 137 (143)
Q Consensus 58 ~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~rlr 137 (143)
...+.+ +..+||.+|.+++...+..... -..+...-+|+... + .-.+.-+++||+|.|..-+-
T Consensus 13 ~~~~~~-~~~~tv~~ll~~l~~~~p~~~~-------------~~~~~v~vN~~~v~-~--~~~~~~l~~gD~V~i~ppvs 75 (77)
T PF02597_consen 13 EEEIEV-PEGSTVRDLLEALAERYPELAL-------------RDRVAVAVNGEIVP-D--DGLDTPLKDGDEVAILPPVS 75 (77)
T ss_dssp EEEEEE-SSTSBHHHHHHHHCHHTGGGHT-------------TTTEEEEETTEEEG-G--GTTTSBEETTEEEEEEESTS
T ss_pred CeEEec-CCCCcHHHHHHHHHhhcccccc-------------CccEEEEECCEEcC-C--ccCCcCcCCCCEEEEECCCC
Confidence 456677 7889999999999987521110 02345555776663 3 45677789999999987554
Q ss_pred c
Q psy2972 138 D 138 (143)
Q Consensus 138 ~ 138 (143)
|
T Consensus 76 G 76 (77)
T PF02597_consen 76 G 76 (77)
T ss_dssp T
T ss_pred C
Confidence 3
No 84
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=82.02 E-value=8.3 Score=26.67 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=30.6
Q ss_pred EEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhH
Q psy2972 48 IMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITM 83 (143)
Q Consensus 48 m~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~ 83 (143)
|+|.+...|..+-+.+ +++.+..+|+..|.+.|..
T Consensus 1 ~~vK~~~~~d~~r~~l-~~~~~~~~L~~~i~~r~~~ 35 (82)
T cd06407 1 VRVKATYGEEKIRFRL-PPSWGFTELKQEIAKRFKL 35 (82)
T ss_pred CEEEEEeCCeEEEEEc-CCCCCHHHHHHHHHHHhCC
Confidence 5677778889999999 8889999999999999854
No 85
>KOG3391|consensus
Probab=80.51 E-value=1.4 Score=34.04 Aligned_cols=29 Identities=14% Similarity=0.011 Sum_probs=25.1
Q ss_pred CCcccccccchhhhhCCCCCCEEEEEeee
Q psy2972 108 DGIKLTNEKSLLSELGIESQCEITFVKRL 136 (143)
Q Consensus 108 ~gkkL~~d~~tL~dyGI~~g~tl~fv~rl 136 (143)
.|.+..+|++||++.+++-||-|-+.+..
T Consensus 109 ~g~Kg~ddnktL~~~kf~iGD~lDVaI~~ 137 (151)
T KOG3391|consen 109 LGRKGIDDNKTLQQTKFEIGDYLDVAITP 137 (151)
T ss_pred cCcccCCccchhhhCCccccceEEEEecC
Confidence 37888899999999999999998887654
No 86
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=79.51 E-value=9 Score=25.29 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=40.9
Q ss_pred EEEeCCc--eEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCC
Q psy2972 51 CIQADNK--KFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQC 128 (143)
Q Consensus 51 ~Vk~~g~--~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~ 128 (143)
+|+.+|+ ...+++ ++.+||.||-+.+.- ..+ .....-+|+... .++-+++||
T Consensus 6 ~v~vng~~~~~~~~~-~~~~tv~~ll~~l~~------~~~-------------~v~v~vNg~iv~------~~~~l~~gD 59 (70)
T PRK08364 6 RVKVIGRGIEKEIEW-RKGMKVADILRAVGF------NTE-------------SAIAKVNGKVAL------EDDPVKDGD 59 (70)
T ss_pred EEEEeccccceEEEc-CCCCcHHHHHHHcCC------CCc-------------cEEEEECCEECC------CCcCcCCCC
Confidence 3344444 678888 778899999877632 112 235556777662 256699999
Q ss_pred EEEEEeeecc
Q psy2972 129 EITFVKRLKD 138 (143)
Q Consensus 129 tl~fv~rlr~ 138 (143)
+|-|..-.-|
T Consensus 60 ~Veii~~V~G 69 (70)
T PRK08364 60 YVEVIPVVSG 69 (70)
T ss_pred EEEEEccccC
Confidence 9998865543
No 87
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=78.90 E-value=7.1 Score=25.41 Aligned_cols=62 Identities=6% Similarity=0.126 Sum_probs=41.0
Q ss_pred EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEE
Q psy2972 53 QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITF 132 (143)
Q Consensus 53 k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~f 132 (143)
+.+|+.+++ ++..||.+|-+.+.-. . ..+.+..+++.+. .+.-.++-+++||+|-+
T Consensus 4 ~vNg~~~~~---~~~~tl~~ll~~l~~~------~-------------~~vaVavN~~iv~--r~~w~~~~L~~gD~Iei 59 (66)
T PRK08053 4 LFNDQPMQC---AAGQTVHELLEQLNQL------Q-------------PGAALAINQQIIP--REQWAQHIVQDGDQILL 59 (66)
T ss_pred EECCeEEEc---CCCCCHHHHHHHcCCC------C-------------CcEEEEECCEEeC--hHHcCccccCCCCEEEE
Confidence 446776555 5667999998754321 1 2346777888773 44455667999999998
Q ss_pred Eeeecc
Q psy2972 133 VKRLKD 138 (143)
Q Consensus 133 v~rlr~ 138 (143)
+.-.-|
T Consensus 60 i~~v~G 65 (66)
T PRK08053 60 FQVIAG 65 (66)
T ss_pred EEEccC
Confidence 875543
No 88
>COG3760 Uncharacterized conserved protein [Function unknown]
Probab=77.53 E-value=28 Score=27.45 Aligned_cols=101 Identities=26% Similarity=0.320 Sum_probs=65.9
Q ss_pred CCcHHHHHHHHHHHHHhhccCCcccCCCCCCCHHHHHhHH-hhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHH
Q psy2972 1 MKDLDQLLTETKEAIKNIRTQNTLSHLPQDVTVEEIKSEM-ELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIE 78 (143)
Q Consensus 1 ~~~~~~~~~~~~~~l~~il~d~~L~dlp~~~t~~ev~~~i-al~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~ 78 (143)
||+.+|+.+.+.+ +==|.--.+=|+--|++|=.++. +++-|.+=.+++ -..++.|=|.+ ..+++-|||..=+
T Consensus 2 ~kt~~el~~lL~e----LgI~~~tveHppv~tveEs~~~~~eipgghtKnLfLkdkK~q~~lv~~--~e~~~vDLk~ih~ 75 (164)
T COG3760 2 MKTEAELFALLDE----LGIDHTTVEHPPVFTVEESQALRDEIPGGHTKNLFLKDKKDQFFLVTV--DEDAVVDLKSIHE 75 (164)
T ss_pred CCCHHHHHHHHHH----hCCCcccccCCCceehHHHHHHHhhcCCCccceeEeecCCCCEEEEEe--cccceecHHHHHH
Confidence 5677777766544 22266666788999999977776 556666788888 44468888888 5567889987544
Q ss_pred HHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEE
Q psy2972 79 RQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITF 132 (143)
Q Consensus 79 ~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~f 132 (143)
-- | --+|.|+... ..+.-+|+.+|+.--|
T Consensus 76 ~I--------G------------~~RlsFg~~E-----~l~E~LGv~pG~VT~F 104 (164)
T COG3760 76 TI--------G------------AARLSFGSPE-----RLMEYLGVIPGSVTVF 104 (164)
T ss_pred Hh--------c------------eeeeecCCHH-----HHHHHhCCCcCceeEe
Confidence 42 1 1167776532 2344557777765544
No 89
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=77.07 E-value=5.9 Score=28.78 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=31.1
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhH
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITM 83 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~ 83 (143)
--|.| +.|+..-++.+ +.++||.||=.++.+++-+
T Consensus 3 y~IRIFr~D~Tf~Tls~-~l~tTv~eli~~L~rK~~l 38 (97)
T cd01775 3 YCIRVFRSDGTFTTLSC-PLNTTVSELIPQLAKKFYL 38 (97)
T ss_pred eEEEEEecCCcEEEEEc-CCcCcHHHHHHHHHHhhcC
Confidence 35788 99999999999 9999999999999999744
No 90
>KOG2086|consensus
Probab=76.40 E-value=6.8 Score=34.73 Aligned_cols=66 Identities=23% Similarity=0.330 Sum_probs=47.4
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEe--eCCcccccccchhhhhCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLS--FDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Li--f~gkkL~~d~~tL~dyGI 124 (143)
..|-| -.||+.+-..+ ...-||.|++..|... |-+... ..|.|. |=-+.|.|+..||++.|+
T Consensus 306 TsIQIRLanG~RlV~~f-N~sHTv~DIR~fI~~a------Rp~~~~--------~~F~L~~~FPpk~l~D~sqTle~AgL 370 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKF-NHSHTVSDIREFIDTA------RPGDSS--------TYFILMMAFPPKPLSDDSQTLEEAGL 370 (380)
T ss_pred ceEEEEecCCceeeeec-cCcccHHHHHHHHHhc------CCCCcC--------CceeeeecCCCcccCCcchhHHhccc
Confidence 44445 36788877777 7778999999999986 444321 123333 345899999999999999
Q ss_pred CCCC
Q psy2972 125 ESQC 128 (143)
Q Consensus 125 ~~g~ 128 (143)
.|..
T Consensus 371 ~Nsv 374 (380)
T KOG2086|consen 371 LNSV 374 (380)
T ss_pred hhhh
Confidence 9854
No 91
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=74.97 E-value=30 Score=26.75 Aligned_cols=75 Identities=12% Similarity=0.224 Sum_probs=36.5
Q ss_pred EEEEEEeCCceEEEEecCCCCcHHHHHH-HHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCIQADNKKFDIVISPKNTRVSDLKR-TIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~Vk~~g~~~~V~V~~~~aTV~dLK~-aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+|+.....+-|-+...+.||.+|=. |+.++-.......+ +|-+| +.|.+.+-.|.+.++.|.+- ..|
T Consensus 1 mkvtV~fg~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~~~~~-----~~v~V---~~l~~~dggiLd~DD~l~dV-~dd 71 (145)
T PF12053_consen 1 MKVTVCFGRTRVVVPCGDGQLTVRDLIQQALRRYRKAKEKDPD-----YWVVV---HHLEYTDGGILDPDDVLCDV-VDD 71 (145)
T ss_dssp -EEEEEETTEEEEEEESSS---HHHHHHHHHHHHHHHTT--TT-----S-EEE---EEEE-SSS-EE-TTS-HHHH-S-T
T ss_pred CeEEEEeCCeEEEEEeCCCCccHHHHHHHHhHhHHHhhccCCC-----ceEEE---eeEEecCCceeccccceeEe-ccC
Confidence 8999988888898988445589999954 33333222211111 45443 24444322344556666665 455
Q ss_pred CCEEE
Q psy2972 127 QCEIT 131 (143)
Q Consensus 127 g~tl~ 131 (143)
.++|.
T Consensus 72 ~d~li 76 (145)
T PF12053_consen 72 RDQLI 76 (145)
T ss_dssp TEEEE
T ss_pred hhhhh
Confidence 66554
No 92
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=74.67 E-value=3.7 Score=28.66 Aligned_cols=59 Identities=24% Similarity=0.240 Sum_probs=32.4
Q ss_pred CCCCcHHHHHHHHHH-HHhHhHhhcccccccccccccceEEEeeCCcc---cccccchhhhhCCCCCCEEEEEe
Q psy2972 65 PKNTRVSDLKRTIER-QITMQMKRKGLSKQISWRHVWKSYWLSFDGIK---LTNEKSLLSELGIESQCEITFVK 134 (143)
Q Consensus 65 ~~~aTV~dLK~aI~~-~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkk---L~~d~~tL~dyGI~~g~tl~fv~ 134 (143)
...+|+.+|-+.|-+ ++.+ +.+.|+. .-.++|+..- =....++|+++||++|+.|++..
T Consensus 6 ~~~~TL~~lv~~Vlk~~Lg~------~~P~v~~-----~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D 68 (87)
T PF14732_consen 6 TKKMTLGDLVEKVLKKKLGM------NEPDVSV-----GGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDD 68 (87)
T ss_dssp TTT-BHHHHHHHCCCCCS--------SSEEEEE-----S-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEE
T ss_pred chhCcHHHHHHHHHHhccCC------CCCEEEe-----CCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEE
Confidence 367899999886543 3221 2233332 3356665433 23457999999999999998753
No 93
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=74.08 E-value=7.2 Score=31.92 Aligned_cols=35 Identities=9% Similarity=0.135 Sum_probs=28.7
Q ss_pred CCcEEEEE-EeCC---------ceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 45 GQSIMCCI-QADN---------KKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 45 g~am~l~V-k~~g---------~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
|+.|++.| |.+. +.|.|.+ .+..||.|+=..|++.
T Consensus 2 ~~~~~~~i~R~~p~~~~~~~~~~~y~v~~-~~~~tvLdaL~~Ik~~ 46 (239)
T PRK13552 2 GRTLTFNIFRYNPQDPGSKPHMVTYQLEE-TPGMTLFIALNRIREE 46 (239)
T ss_pred CceEEEEEEeeCCCCCCCCcceEEEEecC-CCCCCHHHHHHHHHhc
Confidence 66789999 7763 3388888 7889999999999985
No 94
>PLN02560 enoyl-CoA reductase
Probab=72.84 E-value=1.6 Score=37.29 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=41.9
Q ss_pred CCCCCCCHHHHHhHHhhccCC----cEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccc
Q psy2972 26 HLPQDVTVEEIKSEMELLHGQ----SIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHV 99 (143)
Q Consensus 26 dlp~~~t~~ev~~~ial~~g~----am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~v 99 (143)
|+|++.|++||..+|+-..|. ..+++. ..+|+.-.+.+ .++.|+.|.- ++..-+++-. +-| ++||||-|
T Consensus 19 ev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L-~d~ktL~d~g--v~~gstLy~k-DLG-pQi~wrtV 92 (308)
T PLN02560 19 EVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVL-DDSKSLKDYG--LGDGGTVVFK-DLG-PQVSYRTL 92 (308)
T ss_pred EcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCcccc-CCCCCHHhcC--CCCCceEEEE-eCC-CcCchhhh
Confidence 889999999999999876553 355665 33555445556 5666777652 1221112211 222 67998754
No 95
>KOG0013|consensus
Probab=72.72 E-value=7.3 Score=32.21 Aligned_cols=65 Identities=23% Similarity=0.324 Sum_probs=49.7
Q ss_pred EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEE
Q psy2972 53 QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITF 132 (143)
Q Consensus 53 k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~f 132 (143)
+..++-|...+ +...||.++|.+++.+ +|..+ -.|...|+|.-|. |+..|..++|.+|.---|
T Consensus 153 TtT~~d~~lta-~~~Dtv~eik~~L~Aa-------eg~D~--------~sQrif~Sg~~l~-dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 153 TTTREDFWLTA-PHYDTVGEIKRALRAA-------EGVDP--------LSQRIFFSGGVLV-DKTDLEECKIEKGQRYVL 215 (231)
T ss_pred hhhhhheeecc-cCcCcHHHHHHHHHHh-------hccch--------hhheeeccCCcee-ccccceeeeecCCCEEEE
Confidence 44577788888 8889999999999997 44321 2456788998884 899999999999965544
Q ss_pred Ee
Q psy2972 133 VK 134 (143)
Q Consensus 133 v~ 134 (143)
-.
T Consensus 216 qv 217 (231)
T KOG0013|consen 216 QV 217 (231)
T ss_pred EE
Confidence 33
No 96
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=71.00 E-value=2.9 Score=28.37 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=28.5
Q ss_pred CcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhC-CCCCCEEEEE
Q psy2972 68 TRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELG-IESQCEITFV 133 (143)
Q Consensus 68 aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyG-I~~g~tl~fv 133 (143)
.|+.||.+...++|.... +..+.-+|... .|-. |+|||.|+|+
T Consensus 26 ~SleeLl~ia~~kfg~~~----------------~~v~~~dgaeI-------dDI~~IRDgD~L~~~ 69 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFSA----------------TKVLNEDGAEI-------DDIDVIRDGDHLYLV 69 (69)
T ss_pred ccHHHHHHHHHHHhCCCc----------------eEEEcCCCCEE-------eEEEEEEcCCEEEEC
Confidence 499999999999985421 12333344444 3333 8999999875
No 97
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=69.43 E-value=16 Score=23.50 Aligned_cols=60 Identities=8% Similarity=0.124 Sum_probs=39.9
Q ss_pred eCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEE
Q psy2972 54 ADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFV 133 (143)
Q Consensus 54 ~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv 133 (143)
.+|+.++ + +...||.||.+.+.-. .+.+....+|+.+. ...-.++-+++||+|-++
T Consensus 3 iNg~~~~--~-~~~~tv~~ll~~l~~~-------------------~~~v~v~vN~~iv~--~~~~~~~~L~~gD~veii 58 (64)
T TIGR01683 3 VNGEPVE--V-EDGLTLAALLESLGLD-------------------PRRVAVAVNGEIVP--RSEWDDTILKEGDRIEIV 58 (64)
T ss_pred ECCeEEE--c-CCCCcHHHHHHHcCCC-------------------CCeEEEEECCEEcC--HHHcCceecCCCCEEEEE
Confidence 4566544 4 6678999998866421 12446677887773 334455679999999988
Q ss_pred eeec
Q psy2972 134 KRLK 137 (143)
Q Consensus 134 ~rlr 137 (143)
.-.-
T Consensus 59 ~~V~ 62 (64)
T TIGR01683 59 TFVG 62 (64)
T ss_pred Eecc
Confidence 6543
No 98
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=69.39 E-value=6.8 Score=28.52 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=28.4
Q ss_pred EEeeCCcccccccchhhhhCCCCCCEEEEEeeeccc
Q psy2972 104 WLSFDGIKLTNEKSLLSELGIESQCEITFVKRLKDK 139 (143)
Q Consensus 104 ~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~rlr~k 139 (143)
+|.|.|+.| ..+++|.+| |..++--.++.+|..+
T Consensus 3 ~LW~aGK~l-~~~k~l~dy-~GkNEKtKiivKl~~~ 36 (98)
T PF11069_consen 3 QLWWAGKEL-QRGKKLSDY-IGKNEKTKIIVKLQKR 36 (98)
T ss_pred eEEeccccc-cCCCcHHHh-cCCCcceeEEEEeccC
Confidence 788999999 478999999 8888877888777665
No 99
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=68.50 E-value=29 Score=23.26 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=46.0
Q ss_pred EEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCC
Q psy2972 48 IMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQ 127 (143)
Q Consensus 48 m~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g 127 (143)
|.+++..+|+.+.+ +...|++||=+.+.-. ...+....+|+... ...-.++-+++|
T Consensus 1 ~~m~i~~ng~~~e~---~~~~tv~dLL~~l~~~-------------------~~~vav~vNg~iVp--r~~~~~~~l~~g 56 (68)
T COG2104 1 MPMTIQLNGKEVEI---AEGTTVADLLAQLGLN-------------------PEGVAVAVNGEIVP--RSQWADTILKEG 56 (68)
T ss_pred CcEEEEECCEEEEc---CCCCcHHHHHHHhCCC-------------------CceEEEEECCEEcc--chhhhhccccCC
Confidence 34555566775554 4447999987655431 13568888998883 456667889999
Q ss_pred CEEEEEeeecc
Q psy2972 128 CEITFVKRLKD 138 (143)
Q Consensus 128 ~tl~fv~rlr~ 138 (143)
|.|.++.-.-|
T Consensus 57 D~ievv~~v~G 67 (68)
T COG2104 57 DRIEVVRVVGG 67 (68)
T ss_pred CEEEEEEeecC
Confidence 99999876544
No 100
>KOG0012|consensus
Probab=67.64 E-value=11 Score=33.31 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=46.1
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccc-cchhhhhCCCCCCEEEEE
Q psy2972 55 DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNE-KSLLSELGIESQCEITFV 133 (143)
Q Consensus 55 ~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d-~~tL~dyGI~~g~tl~fv 133 (143)
..+.+++.| ...-....|+.-++... |+... ..-|+|++-++..+ ...+.++|+++|+.+.|-
T Consensus 11 ~~~~~~i~v-~~dg~L~nl~aL~~~d~-------g~~~~--------~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr 74 (380)
T KOG0012|consen 11 FEKKFPIPV-TTDGELNNLAALCWKDT-------GIVYD--------PSDLIYNPRPLVSNESQGLTQIGLKDGDSLALR 74 (380)
T ss_pred ceeeecccc-ccccchhhHHHHHHHHh-------Ccccc--------hhhcccCCCccccchhhhhhhcccccceeEecc
Confidence 566688888 55566667776666653 22221 22689999999777 789999999999998764
Q ss_pred ee
Q psy2972 134 KR 135 (143)
Q Consensus 134 ~r 135 (143)
.+
T Consensus 75 ~k 76 (380)
T KOG0012|consen 75 CK 76 (380)
T ss_pred CC
Confidence 43
No 101
>KOG4583|consensus
Probab=67.37 E-value=2.5 Score=37.21 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=42.2
Q ss_pred cEEEEEEeCCce---EEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 47 SIMCCIQADNKK---FDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 47 am~l~Vk~~g~~---~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
..++.||..+.+ +.|.. .-.=||.+||.-++..+ |.+ -+..+++|+|+||-| .|...|+|.
T Consensus 9 ~v~lliks~Nq~y~dl~i~~-dl~wtv~~Lk~hls~Vy---Psk----------pl~~dqrliYsgkll-ld~qcl~d~ 72 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISL-DLKWTVGDLKVHLSQVY---PSK----------PLELDQRLIYSGKLL-LDHQCLTDW 72 (391)
T ss_pred ceEEEecCCCccccceeeeh-hhhhhHHHHhhhHhhcC---CCC----------CchhhHHHHhhcccc-ccchhHHHH
Confidence 345556555443 55555 55679999999999875 322 234688999999777 588888775
No 102
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=66.78 E-value=15 Score=23.66 Aligned_cols=62 Identities=8% Similarity=0.184 Sum_probs=40.6
Q ss_pred EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEE
Q psy2972 53 QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITF 132 (143)
Q Consensus 53 k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~f 132 (143)
..+|+.++ + +..+||.+|.+.+.-. . +.+....+|+... ...-.++-+++||+|.+
T Consensus 3 ~iNg~~~~--~-~~~~tv~~ll~~l~~~------~-------------~~i~V~vNg~~v~--~~~~~~~~L~~gD~V~i 58 (65)
T cd00565 3 TVNGEPRE--V-EEGATLAELLEELGLD------P-------------RGVAVALNGEIVP--RSEWASTPLQDGDRIEI 58 (65)
T ss_pred EECCeEEE--c-CCCCCHHHHHHHcCCC------C-------------CcEEEEECCEEcC--HHHcCceecCCCCEEEE
Confidence 34566444 4 6678999998877521 1 2446677887774 33444567999999999
Q ss_pred Eeeecc
Q psy2972 133 VKRLKD 138 (143)
Q Consensus 133 v~rlr~ 138 (143)
..-.-|
T Consensus 59 i~~v~G 64 (65)
T cd00565 59 VTAVGG 64 (65)
T ss_pred EEeccC
Confidence 865443
No 103
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=66.07 E-value=19 Score=24.32 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=43.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEee---CC--cccccccchhhh---hCCCCC
Q psy2972 56 NKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSF---DG--IKLTNEKSLLSE---LGIESQ 127 (143)
Q Consensus 56 g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif---~g--kkL~~d~~tL~d---yGI~~g 127 (143)
+....|.| ..++|+.|+=+++.++|.+... |..|+|+- +| ..|.++..-+.- .| +++
T Consensus 15 ~~~kti~v-~~~tTa~~Vi~~~l~k~~l~~~-------------~~~y~L~e~~~~~~er~L~~~e~Pl~~~~~~~-~~~ 79 (90)
T smart00314 15 GTYKTLRV-SSRTTARDVIQQLLEKFHLTDD-------------PEEYVLVEVLPDGKERVLPDDENPLQLQKLWP-RRG 79 (90)
T ss_pred CcEEEEEE-CCCCCHHHHHHHHHHHhCCCCC-------------cccEEEEEEeCCcEEEEeCCCCcceEehhhCC-CCC
Confidence 77899999 8889999999999998753221 45666662 33 355444433322 22 336
Q ss_pred CEEEEEeeec
Q psy2972 128 CEITFVKRLK 137 (143)
Q Consensus 128 ~tl~fv~rlr 137 (143)
....|+.|-|
T Consensus 80 ~~~~f~lr~~ 89 (90)
T smart00314 80 PNLRFVLRKR 89 (90)
T ss_pred CcEEEEEEeC
Confidence 6777777654
No 104
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=65.68 E-value=35 Score=25.40 Aligned_cols=72 Identities=17% Similarity=0.091 Sum_probs=39.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhHhHhhcccc----ccccc-----ccccceEEEeeCCcccccccchhhhhCCCCCCE
Q psy2972 59 FDIVISPKNTRVSDLKRTIERQITMQMKRKGLS----KQISW-----RHVWKSYWLSFDGIKLTNEKSLLSELGIESQCE 129 (143)
Q Consensus 59 ~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~----~~IsW-----~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~t 129 (143)
+.|=. =.+||..||=.-|.+... +.|..+. +.|.+ +|+-+..-..+.|.+..+|++||++.+..-||-
T Consensus 39 lqIYt-W~d~TLrEL~~Lik~~~~--~~r~~~tr~~F~~VypD~~~~r~~~kdlGsv~~g~~~~d~~kTL~~~~F~iGDy 115 (120)
T PF06487_consen 39 LQIYT-WMDATLRELADLIKDVNP--PARRRGTRLSFRLVYPDTRSGRYVSKDLGSVVSGRKGPDDNKTLADLRFVIGDY 115 (120)
T ss_dssp EEEEE--TT-BHHHHHHHHHHH-H--HHHSTT-EEEEEEEEECTTTTCEEEEEEEEEETTB--TTTTSBCGGGT--TT-E
T ss_pred eEEEE-cccCCHHHHHHHHHHhCc--ccCCCCCEEEEEEEeecCCCCceeeecCCeEECCCCCCCcccCHhhCCcccCCE
Confidence 44444 467999999888888542 2222221 11111 233345555666777778999999999999998
Q ss_pred EEEE
Q psy2972 130 ITFV 133 (143)
Q Consensus 130 l~fv 133 (143)
|-..
T Consensus 116 idva 119 (120)
T PF06487_consen 116 IDVA 119 (120)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8654
No 105
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=64.86 E-value=28 Score=22.00 Aligned_cols=61 Identities=11% Similarity=0.254 Sum_probs=37.9
Q ss_pred EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEE
Q psy2972 53 QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITF 132 (143)
Q Consensus 53 k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~f 132 (143)
+.+|+.+ .+ ++.+||.+|-+++.- +. ......+|.... ...-.+.=+++||+|-+
T Consensus 4 ~vNg~~~--~~-~~~~tl~~ll~~l~~-------~~-------------~~~v~vN~~~v~--~~~~~~~~L~~gD~vei 58 (65)
T PRK06944 4 QLNQQTL--SL-PDGATVADALAAYGA-------RP-------------PFAVAVNGDFVA--RTQHAARALAAGDRLDL 58 (65)
T ss_pred EECCEEE--EC-CCCCcHHHHHHhhCC-------CC-------------CeEEEECCEEcC--chhcccccCCCCCEEEE
Confidence 4567754 45 667899998876532 11 224566776652 22333445899999999
Q ss_pred Eeeecc
Q psy2972 133 VKRLKD 138 (143)
Q Consensus 133 v~rlr~ 138 (143)
+.-+-|
T Consensus 59 ~~~v~G 64 (65)
T PRK06944 59 VQPVAG 64 (65)
T ss_pred EeeccC
Confidence 876544
No 106
>KOG4146|consensus
Probab=64.43 E-value=32 Score=25.05 Aligned_cols=72 Identities=19% Similarity=0.117 Sum_probs=42.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhHhHhhccccccccc-ccccceEEEeeCCcccccccchh--hhhCCCCCCEEEEEee
Q psy2972 59 FDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISW-RHVWKSYWLSFDGIKLTNEKSLL--SELGIESQCEITFVKR 135 (143)
Q Consensus 59 ~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW-~~vw~~~~Lif~gkkL~~d~~tL--~dyGI~~g~tl~fv~r 135 (143)
....+....+||.+|=.-|..++-- .|.. -+|.= .-.+...||+.+- |...| .+|.+++||.|-|+-.
T Consensus 27 ~~l~~~e~~~tvgdll~yi~~~~ie--~r~~--lFi~~gsvrpGii~lINd~-----DWEllekedy~ledgD~ivfiST 97 (101)
T KOG4146|consen 27 TRLEVGESPATVGDLLDYIFGKYIE--TRDS--LFIHHGSVRPGIIVLINDM-----DWELLEKEDYPLEDGDHIVFIST 97 (101)
T ss_pred EecccCCCcccHHHHHHHHHHHHhc--CCcc--eEeeCCcCcCcEEEEEecc-----chhhhcccccCcccCCEEEEEEe
Confidence 3333334668999998888876521 1111 01100 1124566777543 22222 3799999999999998
Q ss_pred eccc
Q psy2972 136 LKDK 139 (143)
Q Consensus 136 lr~k 139 (143)
|.|+
T Consensus 98 lHGg 101 (101)
T KOG4146|consen 98 LHGG 101 (101)
T ss_pred ccCC
Confidence 8774
No 107
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=63.52 E-value=5.2 Score=36.55 Aligned_cols=31 Identities=16% Similarity=0.398 Sum_probs=25.0
Q ss_pred CCcccccc-cchhhhhCCCCCCEEEEEeeecc
Q psy2972 108 DGIKLTNE-KSLLSELGIESQCEITFVKRLKD 138 (143)
Q Consensus 108 ~gkkL~~d-~~tL~dyGI~~g~tl~fv~rlr~ 138 (143)
++.|+..+ +.-+..+|++||+||.|-+++|.
T Consensus 23 ~~~k~~~~~~eai~~~gl~dgmtisfhhh~r~ 54 (492)
T TIGR01584 23 KPNKLVDSLEEAIKKTGLKDGMTISFHHHFRE 54 (492)
T ss_pred CCceecccHHHHHHHcCCcCCcEEEeeccccC
Confidence 34455433 67888999999999999999996
No 108
>PRK06437 hypothetical protein; Provisional
Probab=63.30 E-value=31 Score=22.64 Aligned_cols=57 Identities=11% Similarity=0.246 Sum_probs=38.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEEee
Q psy2972 56 NKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVKR 135 (143)
Q Consensus 56 g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~r 135 (143)
++.-++.+ +..+||.||=+.+.- .. +.+.+.-+|+.+. .++-+++||.|-++.-
T Consensus 10 ~~~~~~~i-~~~~tv~dLL~~Lgi------~~-------------~~vaV~vNg~iv~------~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 10 HINKTIEI-DHELTVNDIIKDLGL------DE-------------EEYVVIVNGSPVL------EDHNVKKEDDVLILEV 63 (67)
T ss_pred CcceEEEc-CCCCcHHHHHHHcCC------CC-------------ccEEEEECCEECC------CceEcCCCCEEEEEec
Confidence 34467778 778899998765421 11 2345667887773 5667999999999876
Q ss_pred ecc
Q psy2972 136 LKD 138 (143)
Q Consensus 136 lr~ 138 (143)
.-|
T Consensus 64 V~G 66 (67)
T PRK06437 64 FSG 66 (67)
T ss_pred ccC
Confidence 543
No 109
>PF06622 SepQ: SepQ protein; InterPro: IPR009532 This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.
Probab=62.51 E-value=36 Score=28.93 Aligned_cols=92 Identities=17% Similarity=0.193 Sum_probs=57.6
Q ss_pred CCCCHHHHHhHHhhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEee
Q psy2972 29 QDVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSF 107 (143)
Q Consensus 29 ~~~t~~ev~~~ial~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif 107 (143)
.++|.+||+= -...-..--|.- ...+..+.+++ =.-|+..|-+.|.+ .|+.++..+-|.|
T Consensus 105 ~dvS~ddvq~--t~L~K~~~~Vi~f~le~qqln~Vl--fdwp~~~L~~li~D---------------~wq~~~~sqtl~~ 165 (305)
T PF06622_consen 105 DDVSVDDVQF--TDLNKDWYPVIEFNLENQQLNVVL--FDWPVQSLQYLIND---------------NWQLVPHSQTLFF 165 (305)
T ss_pred ccccchhhhh--hhcccceeeeeeecCCCcEEEEEE--EeCcHHHHHHHHhh---------------hhhccccccceee
Confidence 6788888432 222233332333 77788999999 45699999999888 4777788888999
Q ss_pred CCcccccccchhhhhCCCCCCEEEEEeeecccc
Q psy2972 108 DGIKLTNEKSLLSELGIESQCEITFVKRLKDKV 140 (143)
Q Consensus 108 ~gkkL~~d~~tL~dyGI~~g~tl~fv~rlr~k~ 140 (143)
.|-.. ..-..+.=-.++.||.|.+-..-.-|+
T Consensus 166 q~glv-~GWtry~ltqL~vGDgLRl~~aad~k~ 197 (305)
T PF06622_consen 166 QGGLV-PGWTRYPLTQLRVGDGLRLYHAADSKE 197 (305)
T ss_pred ecccc-cceeccceeEeecCCcEEEEeeccccc
Confidence 87433 232222222346677776655444443
No 110
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=62.06 E-value=20 Score=23.33 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=27.9
Q ss_pred EEEEEeCCceEEEEecC-CCCcHHHHHHHHHHHHhH
Q psy2972 49 MCCIQADNKKFDIVISP-KNTRVSDLKRTIERQITM 83 (143)
Q Consensus 49 ~l~Vk~~g~~~~V~V~~-~~aTV~dLK~aI~~~~~~ 83 (143)
+|.++..|....+.+ + .++|..+|+..|...|.+
T Consensus 2 ~vK~~~~~~~~~~~~-~~~~~s~~~L~~~i~~~~~~ 36 (81)
T cd05992 2 RVKVKYGGEIRRFVV-VSRSISFEDLRSKIAEKFGL 36 (81)
T ss_pred cEEEEecCCCEEEEE-ecCCCCHHHHHHHHHHHhCC
Confidence 456666677888888 5 889999999999999854
No 111
>PRK07440 hypothetical protein; Provisional
Probab=60.83 E-value=38 Score=22.43 Aligned_cols=66 Identities=11% Similarity=0.154 Sum_probs=43.9
Q ss_pred cEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 47 SIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 47 am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
.|+|+ .+|+. +.+ +...||.+|=+.+.- . .+......+|+.+. ...-.++-+++
T Consensus 4 ~m~i~--vNG~~--~~~-~~~~tl~~lL~~l~~------~-------------~~~vav~~N~~iv~--r~~w~~~~L~~ 57 (70)
T PRK07440 4 PITLQ--VNGET--RTC-SSGTSLPDLLQQLGF------N-------------PRLVAVEYNGEILH--RQFWEQTQVQP 57 (70)
T ss_pred ceEEE--ECCEE--EEc-CCCCCHHHHHHHcCC------C-------------CCeEEEEECCEEeC--HHHcCceecCC
Confidence 35554 56774 555 667899988764422 1 12457788898874 55667778999
Q ss_pred CCEEEEEeeecc
Q psy2972 127 QCEITFVKRLKD 138 (143)
Q Consensus 127 g~tl~fv~rlr~ 138 (143)
||.|-++.-.-|
T Consensus 58 gD~IEIv~~v~G 69 (70)
T PRK07440 58 GDRLEIVTIVGG 69 (70)
T ss_pred CCEEEEEEEecC
Confidence 999988765533
No 112
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=60.48 E-value=25 Score=23.14 Aligned_cols=33 Identities=9% Similarity=0.249 Sum_probs=27.4
Q ss_pred CCHHHHHhHH-hhccCCcEEEEEEeCCceEEEEe
Q psy2972 31 VTVEEIKSEM-ELLHGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 31 ~t~~ev~~~i-al~~g~am~l~Vk~~g~~~~V~V 63 (143)
-+.+++...+ ....|+.++|+|.++|+..++.|
T Consensus 47 ~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v 80 (82)
T PF13180_consen 47 NSSEDLVNILSKGKPGDTVTLTVLRDGEELTVEV 80 (82)
T ss_dssp SSHHHHHHHHHCSSTTSEEEEEEEETTEEEEEEE
T ss_pred CCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEE
Confidence 4668888777 67889999999977899988877
No 113
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=60.04 E-value=46 Score=22.28 Aligned_cols=57 Identities=9% Similarity=0.026 Sum_probs=31.4
Q ss_pred CCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEEeeecc
Q psy2972 66 KNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVKRLKD 138 (143)
Q Consensus 66 ~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~rlr~ 138 (143)
+.+||.+|++.+.+.+.-.. +.-. ..++...-++ .+.. . +.=+++||+|-|..-.-|
T Consensus 24 ~~~tv~~l~~~L~~~~~~~~-~~~~---------~~~~~~aVN~-~~~~-~----~~~l~dgDeVai~PPVsG 80 (81)
T PRK11130 24 DFPTVEALRQHLAQKGDRWA-LALE---------DGKLLAAVNQ-TLVS-F----DHPLTDGDEVAFFPPVTG 80 (81)
T ss_pred CCCCHHHHHHHHHHhCccHH-hhhc---------CCCEEEEECC-EEcC-C----CCCCCCCCEEEEeCCCCC
Confidence 45899999999998752110 0000 0122222233 3321 1 335999999998765433
No 114
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=59.33 E-value=47 Score=23.03 Aligned_cols=68 Identities=6% Similarity=0.179 Sum_probs=45.6
Q ss_pred CCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 45 GQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 45 g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
+..+.+.|..+|+.+++ ++..||.+|=+.+. + .. +...+..+|..+. .+.-.++-+
T Consensus 14 ~~~~~m~I~VNG~~~~~---~~~~tl~~LL~~l~----~--~~-------------~~vAVevNg~iVp--r~~w~~t~L 69 (84)
T PRK06083 14 AAMVLITISINDQSIQV---DISSSLAQIIAQLS----L--PE-------------LGCVFAINNQVVP--RSEWQSTVL 69 (84)
T ss_pred CCCceEEEEECCeEEEc---CCCCcHHHHHHHcC----C--CC-------------ceEEEEECCEEeC--HHHcCcccC
Confidence 34455556678886555 56679888866532 1 11 2336677888873 667777889
Q ss_pred CCCCEEEEEeee
Q psy2972 125 ESQCEITFVKRL 136 (143)
Q Consensus 125 ~~g~tl~fv~rl 136 (143)
++||.|-++.-.
T Consensus 70 ~egD~IEIv~~V 81 (84)
T PRK06083 70 SSGDAISLFQAI 81 (84)
T ss_pred CCCCEEEEEEEe
Confidence 999999887654
No 115
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=59.28 E-value=20 Score=25.63 Aligned_cols=38 Identities=26% Similarity=0.835 Sum_probs=23.5
Q ss_pred eEEEEecCCCC---cHHHHHHHHHHHHhHhHhhcccccccccccccce
Q psy2972 58 KFDIVISPKNT---RVSDLKRTIERQITMQMKRKGLSKQISWRHVWKS 102 (143)
Q Consensus 58 ~~~V~V~~~~a---TV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~ 102 (143)
.++|.+ |.+. -+.++|.. ++.+....+|+| -|+|+|+-
T Consensus 5 ~m~V~~-P~~~~~~~~~~i~a~-Eka~a~eLq~~G-----k~~~lWRv 45 (90)
T TIGR03221 5 RMDVNL-PVDMPAEKAAAIKAR-EKAYAQELQREG-----KWRHLWRV 45 (90)
T ss_pred EEEeeC-CCCCCHHHHHHHHHH-HHHHHHHHHhCC-----ceEEEEEe
Confidence 367777 5553 34455543 333445667888 58888874
No 116
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=59.13 E-value=32 Score=24.35 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=38.6
Q ss_pred cEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeC
Q psy2972 47 SIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFD 108 (143)
Q Consensus 47 am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~ 108 (143)
.|+|.|...|..+-+.| +++.+..||...|.++|.+. .+-.|.|+.= ..+|.+-+
T Consensus 2 ~ikVKv~~~~Dv~~i~v-~~~i~f~dL~~kIrdkf~~~-----~~~~iKykDE-GD~iti~s 56 (86)
T cd06408 2 KIRVKVHAQDDTRYIMI-GPDTGFADFEDKIRDKFGFK-----RRLKIKMKDD-GDMITMGD 56 (86)
T ss_pred cEEEEEEecCcEEEEEc-CCCCCHHHHHHHHHHHhCCC-----CceEEEEEcC-CCCccccC
Confidence 46777766788888888 88889999999999998652 2344555554 45555443
No 117
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=58.86 E-value=55 Score=22.30 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=49.4
Q ss_pred cEEEEEEe-CCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEe--eCCcccc--cccchhhh
Q psy2972 47 SIMCCIQA-DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLS--FDGIKLT--NEKSLLSE 121 (143)
Q Consensus 47 am~l~Vk~-~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Li--f~gkkL~--~d~~tL~d 121 (143)
..+|-|++ +|+.+.-.. ..++|+.+|-..|... |.+ +..|.|+ |=-+.+. +.+.+|.+
T Consensus 4 ~~~i~iRlP~G~r~~rrF-~~t~~L~~l~~fv~~~--------~~~--------~~~f~L~t~fPRk~~~~~d~~~TL~e 66 (80)
T cd01771 4 ISKLRVRTPSGDFLERRF-LGDTPLQVLLNFVASK--------GYP--------IDEYKLLSSWPRRDLTQLDPNFTLLE 66 (80)
T ss_pred eEEEEEECCCCCEEEEEe-CCCCcHHHHHHHHHhc--------CCC--------CCCEEEecCCCCCCCcCCCCCCcHHH
Confidence 46777754 489999899 8899999999998652 211 1234443 4455553 33579999
Q ss_pred hCCCCCCEEEEE
Q psy2972 122 LGIESQCEITFV 133 (143)
Q Consensus 122 yGI~~g~tl~fv 133 (143)
.|+....+|.+.
T Consensus 67 ~gL~p~~~L~Ve 78 (80)
T cd01771 67 LKLYPQETLILE 78 (80)
T ss_pred cCCCCCcEEEEE
Confidence 999998888764
No 118
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=58.17 E-value=66 Score=23.00 Aligned_cols=80 Identities=10% Similarity=0.115 Sum_probs=51.4
Q ss_pred CcEEEEEEeC--CceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccc-eEEEeeCC--------ccccc
Q psy2972 46 QSIMCCIQAD--NKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWK-SYWLSFDG--------IKLTN 114 (143)
Q Consensus 46 ~am~l~Vk~~--g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~-~~~Lif~g--------kkL~~ 114 (143)
..+.|.|..+ ...+.+.| +.++|+.+|-+.+-.+. .....+.-+ .. +|.|--.| ..| .
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v-~~~~~p~~li~~~l~k~-~~~~~~~~~--------~~~dyvLkV~G~~Eyl~~~~~L-~ 84 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKV-NPNCTPDSVLAQAFTKM-LSLHDQVDP--------TSEDYILKVCGRDEYLLGDHPL-G 84 (108)
T ss_pred CeEEEEEEEccCceeEEEEE-CCCCCHHHHHHHHHHHH-HhccccccC--------CCCcEEEEecCcEEEEeCCeee-e
Confidence 3566777333 46699999 99999999999777764 221111100 11 45665444 344 3
Q ss_pred ccchhhhhCCCCCCEEEEEeeec
Q psy2972 115 EKSLLSELGIESQCEITFVKRLK 137 (143)
Q Consensus 115 d~~tL~dyGI~~g~tl~fv~rlr 137 (143)
+...++++ +++|.++||+...+
T Consensus 85 ~~~yIr~c-l~~~~~~~L~L~~~ 106 (108)
T smart00144 85 SFEYIRNC-LKNGREPHLVLMTL 106 (108)
T ss_pred chHHHHHH-HhcCCCceEEEEec
Confidence 56667666 88899999998765
No 119
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=57.84 E-value=6.1 Score=26.40 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=11.9
Q ss_pred cchhhhhCCCCCCEEEE
Q psy2972 116 KSLLSELGIESQCEITF 132 (143)
Q Consensus 116 ~~tL~dyGI~~g~tl~f 132 (143)
.+.|...|+++||+|.+
T Consensus 46 ~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRI 62 (69)
T ss_dssp HHHHHTTT--TT-EEEE
T ss_pred HHHHHHcCCCCCCEEEE
Confidence 56889999999999975
No 120
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=57.47 E-value=34 Score=21.88 Aligned_cols=62 Identities=8% Similarity=0.113 Sum_probs=41.2
Q ss_pred EEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEE
Q psy2972 52 IQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEIT 131 (143)
Q Consensus 52 Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~ 131 (143)
|..+|+.+++ +. +||.+|.+.+.- .+ +......+++.+. .....+.-+++||+|-
T Consensus 3 i~~Ng~~~~~---~~-~tl~~Ll~~l~~----~~---------------~~vavavN~~iv~--~~~~~~~~L~dgD~Ie 57 (65)
T PRK06488 3 LFVNGETLQT---EA-TTLALLLAELDY----EG---------------NWLATAVNGELVH--KEARAQFVLHEGDRIE 57 (65)
T ss_pred EEECCeEEEc---Cc-CcHHHHHHHcCC----CC---------------CeEEEEECCEEcC--HHHcCccccCCCCEEE
Confidence 3457776665 23 599999876522 11 1235677887773 5566678899999999
Q ss_pred EEeeecc
Q psy2972 132 FVKRLKD 138 (143)
Q Consensus 132 fv~rlr~ 138 (143)
|+.-.-|
T Consensus 58 iv~~V~G 64 (65)
T PRK06488 58 ILSPMQG 64 (65)
T ss_pred EEEeccC
Confidence 9875543
No 121
>smart00362 RRM_2 RNA recognition motif.
Probab=57.21 E-value=38 Score=19.87 Aligned_cols=52 Identities=25% Similarity=0.294 Sum_probs=35.2
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCCce---EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKK---FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g~~---~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||...|-+|+...+. .+|..-.+.+ ...+.. --|.. .+..+-+++++.
T Consensus 3 ~i~~l~~~~~~~~l~~~~~-~~g~v~~~~~~~~~~~~~~~~~v~f----~~~~~a~~a~~~ 58 (72)
T smart00362 3 FVGNLPPDVTEEDLKELFS-KFGPIESVKIPKDTGKSKGFAFVEF----ESEEDAEKAIEA 58 (72)
T ss_pred EEcCCCCcCCHHHHHHHHH-hcCCEEEEEEecCCCCCCceEEEEe----CCHHHHHHHHHH
Confidence 3578999999999999886 7887666666 333221 22333 566777777765
No 122
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=57.18 E-value=17 Score=24.86 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=26.3
Q ss_pred CCCCCCHHHHHhHHhhccCC---cEEEEE-EeCCce
Q psy2972 27 LPQDVTVEEIKSEMELLHGQ---SIMCCI-QADNKK 58 (143)
Q Consensus 27 lp~~~t~~ev~~~ial~~g~---am~l~V-k~~g~~ 58 (143)
+|+..|+.+++..++...|- .|+|.+ ..++..
T Consensus 19 ~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~ 54 (84)
T cd01789 19 YSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKL 54 (84)
T ss_pred cCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCe
Confidence 89999999999999988774 699987 544443
No 123
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=57.14 E-value=31 Score=21.47 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=36.0
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeC-CceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QAD-NKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~-g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||+.+|.+++...+.-. |.--.+.+ +.. |..--... -.-+|..+.+++++..
T Consensus 2 ~i~nlp~~~~~~~l~~~f~~~-g~v~~v~~~~~~~~~~~~~a~-v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 2 YISNLPPSTTEEDLRNFFSRF-GPVEKVRLIKNKDGQSRGFAF-VEFSSEEDAKRALELL 59 (70)
T ss_dssp EEESSTTT--HHHHHHHCTTS-SBEEEEEEEESTTSSEEEEEE-EEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhc-CCcceEEEEeeeccccCCEEE-EEeCCHHHHHHHHHHC
Confidence 357899999999999987664 76556666 332 33322222 1347999999999884
No 124
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=56.13 E-value=72 Score=23.06 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=43.0
Q ss_pred HhhccCCcEEEEE-EeCCce------EEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCccc
Q psy2972 40 MELLHGQSIMCCI-QADNKK------FDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKL 112 (143)
Q Consensus 40 ial~~g~am~l~V-k~~g~~------~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL 112 (143)
|.-.+..-+=|.| +..++. ..+-| |.+.||.++...|.....+.++ ..+.|..++ .|
T Consensus 9 ir~kyP~~IPVIvEr~~~s~lp~ldk~KfLv-p~~~tv~qf~~~ir~rl~l~~~--------------~alfl~Vn~-~l 72 (104)
T PF02991_consen 9 IREKYPDKIPVIVERYPKSKLPDLDKKKFLV-PKDLTVGQFVYIIRKRLQLSPE--------------QALFLFVNN-TL 72 (104)
T ss_dssp HHHHSTTEEEEEEEE-TTSSS---SSSEEEE-ETTSBHHHHHHHHHHHTT--TT--------------S-EEEEBTT-BE
T ss_pred HHHHCCCccEEEEEEccCCChhhcCccEEEE-cCCCchhhHHHHhhhhhcCCCC--------------ceEEEEEcC-cc
Confidence 4445666677888 777655 34567 8889999999999998765543 244566666 56
Q ss_pred ccccchhhh
Q psy2972 113 TNEKSLLSE 121 (143)
Q Consensus 113 ~~d~~tL~d 121 (143)
...+.++.+
T Consensus 73 p~~s~tm~e 81 (104)
T PF02991_consen 73 PSTSSTMGE 81 (104)
T ss_dssp SSTTSBHHH
T ss_pred cchhhHHHH
Confidence 556666654
No 125
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=55.79 E-value=8.3 Score=25.77 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=15.1
Q ss_pred cchhhhhCCCCCCEEEE
Q psy2972 116 KSLLSELGIESQCEITF 132 (143)
Q Consensus 116 ~~tL~dyGI~~g~tl~f 132 (143)
...|.+.|+++||+|..
T Consensus 46 ~~~L~~~G~~~GD~V~I 62 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRI 62 (69)
T ss_pred HHHHHHcCCCCCCEEEE
Confidence 57899999999999975
No 126
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=55.76 E-value=11 Score=25.91 Aligned_cols=27 Identities=11% Similarity=0.299 Sum_probs=22.1
Q ss_pred CCcccccccchhhhhCCCCCCEEEEEee
Q psy2972 108 DGIKLTNEKSLLSELGIESQCEITFVKR 135 (143)
Q Consensus 108 ~gkkL~~d~~tL~dyGI~~g~tl~fv~r 135 (143)
+|.-| |-++++.|||+.+|-++.+..+
T Consensus 45 ~G~vl-D~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 45 SGQVL-DVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCcEe-eccchhhhccccccceEEEEee
Confidence 46565 6789999999999999987654
No 127
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=55.74 E-value=55 Score=21.35 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=27.3
Q ss_pred EEEEEEeCCceEE-EEecCCCCcHHHHHHHHHHHHhH
Q psy2972 48 IMCCIQADNKKFD-IVISPKNTRVSDLKRTIERQITM 83 (143)
Q Consensus 48 m~l~Vk~~g~~~~-V~V~~~~aTV~dLK~aI~~~~~~ 83 (143)
+++.+...|...- +.+ +.+.|..+|+..|.+.|..
T Consensus 2 ~~vK~~~~~~~~~~~~~-~~~~s~~~L~~~i~~~~~~ 37 (84)
T PF00564_consen 2 VRVKVRYGGDIRRIISL-PSDVSFDDLRSKIREKFGL 37 (84)
T ss_dssp EEEEEEETTEEEEEEEE-CSTSHHHHHHHHHHHHHTT
T ss_pred EEEEEEECCeeEEEEEc-CCCCCHHHHHHHHHHHhCC
Confidence 5566666666555 888 8888999999999999854
No 128
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=54.48 E-value=9.3 Score=26.93 Aligned_cols=59 Identities=20% Similarity=0.284 Sum_probs=34.2
Q ss_pred CCCcHHHHHHHHHHHHhHhHhhc-----ccccccccccccceEEEee-CCcccccccchh--hhhCCCCCCEEEEEeeec
Q psy2972 66 KNTRVSDLKRTIERQITMQMKRK-----GLSKQISWRHVWKSYWLSF-DGIKLTNEKSLL--SELGIESQCEITFVKRLK 137 (143)
Q Consensus 66 ~~aTV~dLK~aI~~~~~~~~~re-----g~~~~IsW~~vw~~~~Lif-~gkkL~~d~~tL--~dyGI~~g~tl~fv~rlr 137 (143)
..+||.||=+.+...+. ..|+ ++. -+.+.+++ +|. |-..+ .++-+++||+|+|..-+-
T Consensus 27 ~~~tV~dll~~L~~~~~--~~~~~lf~~~g~--------lr~~i~VlvN~~----di~~l~g~~t~L~dgD~v~i~P~v~ 92 (94)
T cd01764 27 KPVTVGDLLDYVASNLL--EERPDLFIEGGS--------VRPGIIVLINDT----DWELLGEEDYILEDGDHVVFISTLH 92 (94)
T ss_pred CCCcHHHHHHHHHHhCc--hhhhhhEecCCc--------ccCCEEEEECCc----cccccCCcccCCCCcCEEEEECCCC
Confidence 56899999999988762 1111 110 01223333 332 22233 356799999999987654
Q ss_pred c
Q psy2972 138 D 138 (143)
Q Consensus 138 ~ 138 (143)
|
T Consensus 93 G 93 (94)
T cd01764 93 G 93 (94)
T ss_pred C
Confidence 4
No 129
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=54.11 E-value=72 Score=22.19 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=50.3
Q ss_pred CCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEee--CCcccc--cccchh
Q psy2972 45 GQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSF--DGIKLT--NEKSLL 119 (143)
Q Consensus 45 g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif--~gkkL~--~d~~tL 119 (143)
|..-+|-| --+|+.+.-.. ..++|+.+|-..|+.. |. -+..|.|+- =-+.+. +-+.||
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF-~~~~~L~~v~~fv~~~--------g~--------~~~~f~L~t~FPRr~~~~~d~~~TL 65 (82)
T cd01773 3 GPKARLMLRYPDGKREQIAL-PEQAKLLALVRHVQSK--------GY--------PNERFELLTNFPRRKLSHLDYDITL 65 (82)
T ss_pred CCeeEEEEECCCCCEEEEEe-CCCCcHHHHHHHHHhc--------CC--------CCCCEEEecCCCCcccCCcccCCCH
Confidence 44567888 45599999999 7789999998877762 11 113444442 233332 225799
Q ss_pred hhhCCCCCCEEEEEee
Q psy2972 120 SELGIESQCEITFVKR 135 (143)
Q Consensus 120 ~dyGI~~g~tl~fv~r 135 (143)
++.|+.+..+|.+-.|
T Consensus 66 ~e~GL~P~~~LfVq~r 81 (82)
T cd01773 66 QEAGLCPQETVFVQER 81 (82)
T ss_pred HHcCCCCCcEEEEecC
Confidence 9999999999877544
No 130
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=54.09 E-value=15 Score=26.43 Aligned_cols=36 Identities=14% Similarity=0.507 Sum_probs=22.6
Q ss_pred EEEEecCCC---CcHHHHHHHHHHHHhHhHhhcccccccccccccc
Q psy2972 59 FDIVISPKN---TRVSDLKRTIERQITMQMKRKGLSKQISWRHVWK 101 (143)
Q Consensus 59 ~~V~V~~~~---aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~ 101 (143)
++|.+ |.+ .-++++|.. ++......+++| +|+++|+
T Consensus 7 Mtv~~-PdsMdad~~er~~A~-Eka~s~~Lq~~G-----~~~~lWR 45 (98)
T COG4829 7 MTVRV-PDSMDADAVERVRAR-EKARSRELQAQG-----KLLRLWR 45 (98)
T ss_pred EEEEc-CCCCCHHHHHHHHHH-HHHHHHHHHhcc-----hHHHHHh
Confidence 45555 433 456666643 444556677888 7999987
No 131
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=53.25 E-value=15 Score=26.92 Aligned_cols=29 Identities=3% Similarity=0.131 Sum_probs=24.3
Q ss_pred EEEEEEeCCceEEEEecCCCCcHHHHHHHH
Q psy2972 48 IMCCIQADNKKFDIVISPKNTRVSDLKRTI 77 (143)
Q Consensus 48 m~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI 77 (143)
|+|.|+.+++.+.++. .++.|..+|.+++
T Consensus 1 mkI~i~i~~~~~~a~L-~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITIGGQEIEAEL-NDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEETTEEEEEEE-ETTHHHHHHHHC-
T ss_pred CeEEEEECCEEEEEEE-CCCHHHHHHHHhC
Confidence 8899988899999999 8888888777654
No 132
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=52.61 E-value=18 Score=28.84 Aligned_cols=42 Identities=17% Similarity=0.406 Sum_probs=25.4
Q ss_pred hccCCcEEEEE-EeCC---ceEEEEecCCCCcHHHHHHHHHHHHhHh
Q psy2972 42 LLHGQSIMCCI-QADN---KKFDIVISPKNTRVSDLKRTIERQITMQ 84 (143)
Q Consensus 42 l~~g~am~l~V-k~~g---~~~~V~V~~~~aTV~dLK~aI~~~~~~~ 84 (143)
+|.=+.|+|+. ..+. +.+.+-| +.++||.||-.+++.++.+.
T Consensus 15 lE~kk~~kv~w~~~~~~~~~~~~~~v-pk~~tV~Dll~~l~~k~~~~ 60 (213)
T PF14533_consen 15 LENKKQFKVTWLNDGLKEEQEYELLV-PKTGTVSDLLEELQKKVGFS 60 (213)
T ss_dssp HHSB--EEEEEE-TTS-EE-EEEE---BTT-BHHHHHHHHHTT----
T ss_pred HhCceEEEEEEECCCCcceeEEEEEE-CCCCCHHHHHHHHHHHcCCC
Confidence 45556788888 4442 3489999 99999999999999998763
No 133
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=52.37 E-value=59 Score=20.98 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=38.1
Q ss_pred EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEE
Q psy2972 53 QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITF 132 (143)
Q Consensus 53 k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~f 132 (143)
+.+|+.+++ ++..|+.+|=++..- . ++...+..+|..+.. .....+ +++||.|-+
T Consensus 4 ~vNG~~~~~---~~~~tl~~ll~~l~~------~-------------~~~vav~~N~~iv~r--~~~~~~-L~~gD~ieI 58 (65)
T PRK05863 4 VVNEEQVEV---DEQTTVAALLDSLGF------P-------------EKGIAVAVDWSVLPR--SDWATK-LRDGARLEV 58 (65)
T ss_pred EECCEEEEc---CCCCcHHHHHHHcCC------C-------------CCcEEEEECCcCcCh--hHhhhh-cCCCCEEEE
Confidence 456775554 566798887664322 1 134577888887743 333456 999999998
Q ss_pred Eeee
Q psy2972 133 VKRL 136 (143)
Q Consensus 133 v~rl 136 (143)
+.-.
T Consensus 59 v~~V 62 (65)
T PRK05863 59 VTAV 62 (65)
T ss_pred Eeec
Confidence 8654
No 134
>KOG0071|consensus
Probab=51.64 E-value=18 Score=28.65 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhccCCcccC-----------CCCCCCHHHHHhHHhhcc
Q psy2972 6 QLLTETKEAIKNIRTQNTLSH-----------LPQDVTVEEIKSEMELLH 44 (143)
Q Consensus 6 ~~~~~~~~~l~~il~d~~L~d-----------lp~~~t~~ev~~~ial~~ 44 (143)
+=|+..+++|.++++||.+++ +|...+..|+...+.||.
T Consensus 98 dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~ 147 (180)
T KOG0071|consen 98 DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELER 147 (180)
T ss_pred hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccc
Confidence 457788999999999997764 788889999999988876
No 135
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=51.12 E-value=28 Score=28.66 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=27.5
Q ss_pred CCcEEEEE-EeCC-------ceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 45 GQSIMCCI-QADN-------KKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 45 g~am~l~V-k~~g-------~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+..|++.| |.++ +.|.|.+ .+..||.|+=..|++.
T Consensus 3 ~~~~~~~i~R~~~~~~~~~~q~y~v~~-~~~~tvLdaL~~I~~~ 45 (249)
T PRK08640 3 EKTVRLIIKRQDGPDSKPYWEEFEIPY-RPNMNVISALMEIRRN 45 (249)
T ss_pred CcEEEEEEEeeCCCCCCceeEEEEecC-CCCCcHHHHHHHHHhc
Confidence 44688898 7763 3488888 7889999999999874
No 136
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=50.54 E-value=29 Score=23.76 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=21.3
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHHh-HhHh
Q psy2972 58 KFDIVISPKNTRVSDLKRTIERQIT-MQMK 86 (143)
Q Consensus 58 ~~~V~V~~~~aTV~dLK~aI~~~~~-~~~~ 86 (143)
+|=.-. .++.|+.+|+..|.++|. +||-
T Consensus 4 KFLhlt-~~~~tl~~L~~eI~~~f~kLYP~ 32 (73)
T PF10407_consen 4 KFLHLT-DPNNTLSQLKEEIEERFKKLYPN 32 (73)
T ss_pred EEEEEe-CCCCcHHHHHHHHHHHHHHHCCC
Confidence 344445 688999999999999996 4554
No 137
>TIGR03112 6_pyr_pter_rel 6-pyruvoyl tetrahydropterin synthase-related domain. Members of this family are small proteins, or small domains of larger proteins, that occur in certain Firmicutes in the same regions as members of families TIGR03110 and TIGR03111. Members of TIGR03110 resemble exosortase, a proposed protein sorting transpeptidase (see TIGR02602). TIGR03111 represents a small clade among the group 2 glycosyltransferases. Members of the current protein family resemble eukaryotic known and prokaryotic predicted 6-pyruvoyl tetrahydropterin synthases.
Probab=49.62 E-value=78 Score=23.00 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHHhhccCCcccCCCC----CCCHHHHHhHHh------hccC--CcEEEEE-EeCCceE
Q psy2972 3 DLDQLLTETKEAIKNIRTQNTLSHLPQ----DVTVEEIKSEME------LLHG--QSIMCCI-QADNKKF 59 (143)
Q Consensus 3 ~~~~~~~~~~~~l~~il~d~~L~dlp~----~~t~~ev~~~ia------l~~g--~am~l~V-k~~g~~~ 59 (143)
|..++-+++++.+.. ++-.+|+|+|. ++|.|-+-..|. |... ...+|.| -.+...+
T Consensus 42 Df~~lk~~l~~v~~~-~DH~~LNdv~~f~~~~PTaEniA~~i~~~l~~~l~~~~~~l~~V~l~Et~~~~~ 110 (113)
T TIGR03112 42 LFNDVEKKVEKYLKP-YQNKYLNDLEPFDKINPTLENIGDYFFDEIKKLLKEKGWKLHSIEISETPTRTY 110 (113)
T ss_pred EHHHHHHHHHHHHHc-CCCceeccCCccCCCCCCHHHHHHHHHHHHHHhhccCCceEEEEEEEECCCceE
Confidence 556666777665553 77899999884 578876655552 2211 3466777 4445444
No 138
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=48.71 E-value=75 Score=24.25 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=27.1
Q ss_pred CcEEEEEEeCCce----EEEEecCCCCcHHHHHHHHHHHHhH
Q psy2972 46 QSIMCCIQADNKK----FDIVISPKNTRVSDLKRTIERQITM 83 (143)
Q Consensus 46 ~am~l~Vk~~g~~----~~V~V~~~~aTV~dLK~aI~~~~~~ 83 (143)
++.++.|++.|.. =.|.| +.+.|..+|=.+|+.+|..
T Consensus 3 ~~y~lkV~L~~~~p~iwRri~V-p~~~tl~~Lh~~Iq~afgw 43 (179)
T PF07929_consen 3 KVYQLKVSLKGSKPPIWRRIEV-PADITLADLHEVIQAAFGW 43 (179)
T ss_dssp EEEEEEEEETT-SS-EEEEEEE-ETT-BHHHHHHHHHHHTT-
T ss_pred eEEEEEEEEcCCCCCeEEEEEE-CCCCCHHHHHHHHHHHhCc
Confidence 3456777666543 57788 8999999999999999964
No 139
>KOG4147|consensus
Probab=47.26 E-value=6.7 Score=29.39 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=18.0
Q ss_pred ccccccchhhhhCCCCCCEEEE
Q psy2972 111 KLTNEKSLLSELGIESQCEITF 132 (143)
Q Consensus 111 kL~~d~~tL~dyGI~~g~tl~f 132 (143)
.|.+++++|..|||.|..++.|
T Consensus 89 ~L~d~~ktL~~~GIenETEis~ 110 (127)
T KOG4147|consen 89 LLKDEDKTLKAAGIENETEISF 110 (127)
T ss_pred eecCccchHHHhccCcchhhhh
Confidence 3455789999999999988765
No 140
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=44.00 E-value=69 Score=22.38 Aligned_cols=35 Identities=6% Similarity=0.153 Sum_probs=28.5
Q ss_pred EEEEEeCCceEEEEecCC--CCcHHHHHHHHHHHHhHh
Q psy2972 49 MCCIQADNKKFDIVISPK--NTRVSDLKRTIERQITMQ 84 (143)
Q Consensus 49 ~l~Vk~~g~~~~V~V~~~--~aTV~dLK~aI~~~~~~~ 84 (143)
+|.++..|..+-+.+ ++ +.|..+|++.|.+.|.+.
T Consensus 2 ~vKaty~~d~~rf~~-~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 2 NLKVTYNGESQSFLV-SDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEEEEECCeEEEEEe-cCCCCCCHHHHHHHHHHHhCCC
Confidence 566678889989999 77 559999999999988643
No 141
>KOG4410|consensus
Probab=43.99 E-value=27 Score=30.48 Aligned_cols=39 Identities=28% Similarity=0.569 Sum_probs=30.2
Q ss_pred CCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCc
Q psy2972 65 PKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGI 110 (143)
Q Consensus 65 ~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gk 110 (143)
+.++.|.|||.++.+ |+-.+-.|||+.-...-.|-|.+.
T Consensus 339 ~rd~rv~dlk~~lr~-------~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 339 SRDIRVKDLKSELRK-------RECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ccccchHHHHHHHHh-------cCCCceeEeeecCCcceeEecCCc
Confidence 456899999999988 688899999977555555666554
No 142
>PF01524 Gemini_V1: Geminivirus V1 protein; InterPro: IPR002511 Disruption of the V1 gene in Tomato yellow leaf curl virus (TYLCV) stopped its ability to systemically infect Solanum lycopersicum (Tomato) (Lycopersicon esculentum) plants, suggesting that the V1 gene product is required for successful infection of the host [].; GO: 0019048 virus-host interaction, 0060967 negative regulation of gene silencing by RNA, 0030430 host cell cytoplasm
Probab=43.42 E-value=12 Score=26.22 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.3
Q ss_pred CCcccCCCCCCCHHHHHhHHhhccCCcE
Q psy2972 21 QNTLSHLPQDVTVEEIKSEMELLHGQSI 48 (143)
Q Consensus 21 d~~L~dlp~~~t~~ev~~~ial~~g~am 48 (143)
||+||++|. |+-..+--+|+.+=|..
T Consensus 3 DPLlnefP~--tvHGfRCMLAiKYlq~~ 28 (78)
T PF01524_consen 3 DPLLNEFPE--TVHGFRCMLAIKYLQLV 28 (78)
T ss_pred ccccccCCc--cccchhHHHHHHHHHHc
Confidence 999999998 77889999999887653
No 143
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=42.09 E-value=17 Score=25.35 Aligned_cols=64 Identities=22% Similarity=0.246 Sum_probs=38.8
Q ss_pred EEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCc-cc-----ccccchhhhhCCCCCCEEEEEe
Q psy2972 61 IVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGI-KL-----TNEKSLLSELGIESQCEITFVK 134 (143)
Q Consensus 61 V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gk-kL-----~~d~~tL~dyGI~~g~tl~fv~ 134 (143)
|.| ++++|+.+|=..+.+...++..+ +.|+ =..--|+..+- .| .+-.++|.+. +.+|++|++..
T Consensus 1 i~v-~~~~TL~~lid~L~~~~~~qlk~----PSlt----~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD 70 (84)
T PF08825_consen 1 IEV-SPSWTLQDLIDSLCEKPEFQLKK----PSLT----TANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTD 70 (84)
T ss_dssp EEE-STTSBSHHHHHHHHHSTTT--SS-----EEE----SSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEE
T ss_pred CCc-CccchHHHHHHHHHhChhhhcCC----Cccc----CCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEEC
Confidence 467 88899999999999874433321 1111 01223444332 11 1246899999 99999998753
No 144
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=41.83 E-value=80 Score=20.58 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=40.9
Q ss_pred EeCCceEEEEecCCC-CcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEE
Q psy2972 53 QADNKKFDIVISPKN-TRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEIT 131 (143)
Q Consensus 53 k~~g~~~~V~V~~~~-aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~ 131 (143)
+.+|+.+++ +.. .||.||=+.+.- . .+......+|+.+. .+.-.++-+++||.|-
T Consensus 4 ~vNG~~~~~---~~~~~tv~~lL~~l~~------~-------------~~~vav~vN~~iv~--r~~w~~~~L~~gD~iE 59 (67)
T PRK07696 4 KINGNQIEV---PESVKTVAELLTHLEL------D-------------NKIVVVERNKDILQ--KDDHTDTSVFDGDQIE 59 (67)
T ss_pred EECCEEEEc---CCCcccHHHHHHHcCC------C-------------CCeEEEEECCEEeC--HHHcCceecCCCCEEE
Confidence 457775544 444 688888764432 1 12346778888884 5566777899999999
Q ss_pred EEeeecc
Q psy2972 132 FVKRLKD 138 (143)
Q Consensus 132 fv~rlr~ 138 (143)
++.-.-|
T Consensus 60 Iv~~VgG 66 (67)
T PRK07696 60 IVTFVGG 66 (67)
T ss_pred EEEEecC
Confidence 8875533
No 145
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=39.16 E-value=90 Score=21.78 Aligned_cols=50 Identities=8% Similarity=0.205 Sum_probs=39.7
Q ss_pred CCCC--CCCHHHHHhHHhhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 26 HLPQ--DVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 26 dlp~--~~t~~ev~~~ial~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
.+|+ .+|.+++..+++-..+-. .+.+ =+|...=+|.+ +|=.||.+++.-.
T Consensus 15 ~~~~~~~~~~~~L~~ev~~rf~l~-~f~lKYlDde~e~v~l----ssd~eLeE~~rl~ 67 (81)
T cd06396 15 LVSDSENTTWASVEAMVKVSFGLN-DIQIKYVDEENEEVSV----NSQGEYEEALKSA 67 (81)
T ss_pred EecCCCCCCHHHHHHHHHHHhCCC-cceeEEEcCCCCEEEE----EchhhHHHHHHHH
Confidence 3666 889999999999888876 7777 67776678888 4567899888865
No 146
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=39.11 E-value=39 Score=23.32 Aligned_cols=23 Identities=9% Similarity=0.332 Sum_probs=18.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHh
Q psy2972 59 FDIVISPKNTRVSDLKRTIERQIT 82 (143)
Q Consensus 59 ~~V~V~~~~aTV~dLK~aI~~~~~ 82 (143)
+++.| +.++|+.++|+.+-+.-.
T Consensus 2 i~l~~-~~~~Tl~~iK~~lw~~A~ 24 (78)
T PF02192_consen 2 IPLRV-SRDATLSEIKEELWEEAK 24 (78)
T ss_dssp EEEEE-ETT-BHHHHHHHHHHHGG
T ss_pred eEEEc-cCcCcHHHHHHHHHHHHH
Confidence 57888 888999999998877643
No 147
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=38.56 E-value=69 Score=22.74 Aligned_cols=37 Identities=24% Similarity=0.741 Sum_probs=21.6
Q ss_pred eEEEEecCCCCcH---HHHHHHHHHHHhHhHhhcccccccccccccc
Q psy2972 58 KFDIVISPKNTRV---SDLKRTIERQITMQMKRKGLSKQISWRHVWK 101 (143)
Q Consensus 58 ~~~V~V~~~~aTV---~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~ 101 (143)
.++|.+ |++.+- .++|..=.+. ....+++| -|+|+|+
T Consensus 6 ~m~v~~-P~~~~~~~~~~~~a~E~~~-a~eLq~~G-----~~~~lWr 45 (91)
T PF02426_consen 6 RMTVNV-PPDMPPEEVDRLKAREKAR-AQELQRQG-----KWRHLWR 45 (91)
T ss_pred EEEeeC-CCCCCHHHHHHHHHHHHHH-HHHHHHCC-----eeeEEEE
Confidence 357777 665444 4444433332 34556788 5888887
No 148
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=38.21 E-value=76 Score=21.60 Aligned_cols=59 Identities=8% Similarity=0.029 Sum_probs=33.0
Q ss_pred CCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEEeeecc
Q psy2972 65 PKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVKRLKD 138 (143)
Q Consensus 65 ~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~rlr~ 138 (143)
...+||.+|.+.+.+.+......... .......+...+. +. ++-|++||+|-|....-|
T Consensus 25 ~~~~tv~~L~~~l~~~~~~~~~~~~~----------~~~v~~~~~~~~~-~~----~t~L~dGDeVa~~PPVsG 83 (84)
T COG1977 25 TVGATVGELEELLPKEGERWLLALED----------NIVVNAANNEFLV-GL----DTPLKDGDEVAFFPPVSG 83 (84)
T ss_pred cHHHHHHHHHHHHHhhhhhHHhccCc----------cceEEeeeceeec-cc----cccCCCCCEEEEeCCCCC
Confidence 33589999998887665322221110 0112222334443 22 345899999999876654
No 149
>PF02831 gpW: gpW; InterPro: IPR004174 GpW is a 68 residue protein known to be present in phage particles. Extracts of phage-infected cells lacking GpW contain DNA-filled heads, and active tails, but no infectious virions. GpW is required for the addition of GpFII to the head, which is, in turn, required for the attachment of tails. Since GpFII and tails are known to be attached at the connector, GpW is also likely to assemble at this site. The addition of GpW to filled heads increases the DNase resistance of the packaged DNA, suggesting that GpW either forms a plug at the connector to prevent ejection of the DNA, or binds directly to the DNA. The large number of positively charged residues in GpW (its calculated pI is 10.8) is consistent with a role in DNA interaction [].; GO: 0019067 viral assembly, maturation, egress, and release; PDB: 2L6Q_A 2L6R_A 1HYW_A.
Probab=38.21 E-value=1.1e+02 Score=20.55 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=29.6
Q ss_pred HhHHhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 37 KSEMELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 37 ~~~ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
..+.+|.-|+.. ++|..||.+..+.- +.+.+|+..|++-
T Consensus 12 ~A~h~L~tG~~v-vsv~~dgrsV~Yt~----a~i~~L~~yI~~L 50 (68)
T PF02831_consen 12 AAYHDLLTGQRV-VSVQGDGRSVTYTQ----ANIGDLRAYIQQL 50 (68)
T ss_dssp HHHHHHHCS-SE-EEEEETTEEEEEEG----GGHHHHHHHHHHH
T ss_pred HHHHHHHhCCce-eEeecCCeEEEEec----CCHHHHHHHHHHH
Confidence 456678888744 77888888777766 8999999999874
No 150
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=38.16 E-value=1.4e+02 Score=20.98 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 26 HLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 26 dlp~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
.+|.-+-.+||..-..-.+||.|.++-+.+. +.| +--+=.||-+||+--
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~e----L~i--Pl~~Q~DLDkAie~l 63 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNNE----LLI--PLKNQEDLDRAIELL 63 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEeccc----EEE--eccCHHHHHHHHHHH
Confidence 3688899999999999999999999984444 444 235778999999874
No 151
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=38.11 E-value=1e+02 Score=19.86 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=24.9
Q ss_pred CHHHHHhHHh-hccCCcEEEEEEeCCceEEEEe
Q psy2972 32 TVEEIKSEME-LLHGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 32 t~~ev~~~ia-l~~g~am~l~Vk~~g~~~~V~V 63 (143)
+.+++...+. ...|..+.+++..+|+...+.+
T Consensus 41 ~~~~~~~~l~~~~~~~~v~l~v~r~g~~~~~~v 73 (79)
T cd00986 41 EAEELIDYIQSKKEGDTVKLKVKREEKELPEDL 73 (79)
T ss_pred CHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEE
Confidence 5788888886 5678888999966788877776
No 152
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=37.88 E-value=73 Score=26.32 Aligned_cols=45 Identities=13% Similarity=0.355 Sum_probs=29.4
Q ss_pred EEEEE-EeCC-------ceEEEE-ecCCCCcHHHHHHHHHHHHhHhHhhccccccccccc
Q psy2972 48 IMCCI-QADN-------KKFDIV-ISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRH 98 (143)
Q Consensus 48 m~l~V-k~~g-------~~~~V~-V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~ 98 (143)
|++.| |.++ +.|.|. + .+..||.|.=..|++.. .+++... ++|++
T Consensus 3 ~~~~i~R~~~~~~~~~~q~y~v~~~-~~~~tvLd~L~~Ik~~~----~~~~~~~-l~fr~ 56 (250)
T PRK07570 3 LTLKIWRQKGPDDKGKFETYEVDDI-SPDMSFLEMLDVLNEQL----IEKGEEP-VAFDH 56 (250)
T ss_pred EEEEEEecCCCCCCceeEEEEecCC-CCCCcHHHHHHHHHHHh----hccCCCC-eeEec
Confidence 56788 7652 236666 5 57799999999998753 2333333 77765
No 153
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=37.03 E-value=1.1e+02 Score=19.41 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=36.3
Q ss_pred EEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCC
Q psy2972 50 CCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQC 128 (143)
Q Consensus 50 l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~ 128 (143)
|+| .-+|+..+ + +..+|+.|+=+.|...+. + +...-..+|+... -++-+++||
T Consensus 1 I~v~lpdG~~~~--~-~~g~T~~d~A~~I~~~l~-----~------------~~~~A~Vng~~vd------l~~~L~~~d 54 (60)
T PF02824_consen 1 IRVYLPDGSIKE--L-PEGSTVLDVAYSIHSSLA-----K------------RAVAAKVNGQLVD------LDHPLEDGD 54 (60)
T ss_dssp EEEEETTSCEEE--E-ETTBBHHHHHHHHSHHHH-----H------------CEEEEEETTEEEE------TTSBB-SSE
T ss_pred CEEECCCCCeee--C-CCCCCHHHHHHHHCHHHH-----h------------heeEEEEcCEECC------CCCCcCCCC
Confidence 345 46688777 5 778999999999887641 1 0112334565442 145688899
Q ss_pred EEEEE
Q psy2972 129 EITFV 133 (143)
Q Consensus 129 tl~fv 133 (143)
+|.|.
T Consensus 55 ~v~ii 59 (60)
T PF02824_consen 55 VVEII 59 (60)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88875
No 154
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=35.40 E-value=1.3e+02 Score=21.08 Aligned_cols=34 Identities=9% Similarity=0.214 Sum_probs=27.1
Q ss_pred EEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHh
Q psy2972 49 MCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQ 84 (143)
Q Consensus 49 ~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~ 84 (143)
.|+|...+ .+.+.| ++..+..+|...|.+++.+.
T Consensus 4 vvKV~f~~-tIaIrv-p~~~~y~~L~~ki~~kLkl~ 37 (80)
T cd06406 4 VVKVHFKY-TVAIQV-ARGLSYATLLQKISSKLELP 37 (80)
T ss_pred EEEEEEEE-EEEEEc-CCCCCHHHHHHHHHHHhCCC
Confidence 45663334 899999 88899999999999997654
No 155
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=34.85 E-value=1.2e+02 Score=19.13 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=37.8
Q ss_pred EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEE
Q psy2972 53 QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITF 132 (143)
Q Consensus 53 k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~f 132 (143)
+.+|+.+ .+ +...||.+|=++..- . .+...+..+|+.+. ...-.++=+++||.|-+
T Consensus 4 ~vNG~~~--~~-~~~~tl~~lL~~l~~------~-------------~~~vav~vNg~iv~--r~~~~~~~l~~gD~vei 59 (66)
T PRK05659 4 QLNGEPR--EL-PDGESVAALLAREGL------A-------------GRRVAVEVNGEIVP--RSQHASTALREGDVVEI 59 (66)
T ss_pred EECCeEE--Ec-CCCCCHHHHHHhcCC------C-------------CCeEEEEECCeEeC--HHHcCcccCCCCCEEEE
Confidence 4567744 55 667898887654321 1 12335667887763 34455666999999988
Q ss_pred Eeee
Q psy2972 133 VKRL 136 (143)
Q Consensus 133 v~rl 136 (143)
+.-.
T Consensus 60 ~~~v 63 (66)
T PRK05659 60 VHAL 63 (66)
T ss_pred EEEe
Confidence 7654
No 156
>PF06918 DUF1280: Protein of unknown function (DUF1280); InterPro: IPR009689 This family represents a conserved region approximately 200 residues long within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans.
Probab=33.33 E-value=1.6e+02 Score=24.03 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhcc-CCcccCCCCCCCHHHHHhHHhhccCCcEEE-EE-EeC--CceEEEEecCCCCcHHHHHHHHHHHH
Q psy2972 7 LLTETKEAIKNIRT-QNTLSHLPQDVTVEEIKSEMELLHGQSIMC-CI-QAD--NKKFDIVISPKNTRVSDLKRTIERQI 81 (143)
Q Consensus 7 ~~~~~~~~l~~il~-d~~L~dlp~~~t~~ev~~~ial~~g~am~l-~V-k~~--g~~~~V~V~~~~aTV~dLK~aI~~~~ 81 (143)
-|..++.-+..-+. ||| |+--.+.++...++...-=.+.. .+ +.+ |+...+.- .-.++.++++.+....
T Consensus 69 ~lk~~K~~~k~~lg~Dvf----~Sr~~i~~l~k~~s~~~~y~i~~~~~~k~~~~g~~v~v~~--~~v~~~dv~~~l~~rl 142 (224)
T PF06918_consen 69 FLKKFKKFLKEFLGFDVF----PSRKSIDELEKKVSSIDDYEISTEKITKKTGSGKEVTVVT--CVVSIKDVEKLLSRRL 142 (224)
T ss_pred HHHHHHHHHHHhCCCCCC----CCHHHHHHHHHhcCcccceEEEEEEccccCCCCeEEEEEE--EEEEecCHHHHHHHHH
Confidence 46677777888777 887 77777888888877766422222 22 322 44444433 4568899999999887
Q ss_pred h
Q psy2972 82 T 82 (143)
Q Consensus 82 ~ 82 (143)
.
T Consensus 143 e 143 (224)
T PF06918_consen 143 E 143 (224)
T ss_pred H
Confidence 5
No 157
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=32.94 E-value=1.3e+02 Score=20.92 Aligned_cols=81 Identities=10% Similarity=0.085 Sum_probs=47.4
Q ss_pred cCCcEEEEE-Ee-CCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEee--------CCcccc
Q psy2972 44 HGQSIMCCI-QA-DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSF--------DGIKLT 113 (143)
Q Consensus 44 ~g~am~l~V-k~-~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif--------~gkkL~ 113 (143)
.+..+.|.| .. +..++++.+ ..++|+.+|-+.+-.+.. ..-..+.+ -.+|.|-- ++..|
T Consensus 13 ~~~~i~v~v~~~~~~~~~t~~~-~~~~t~~~li~~~l~k~~-~~~~~~~~--------~~dyvLKV~G~~EyL~g~~~L- 81 (106)
T PF00794_consen 13 QNNKIKVSVHFENSQQSFTFQV-DPNSTPEELIAQALKKKL-KDLLPPDP--------EDDYVLKVCGREEYLLGDHPL- 81 (106)
T ss_dssp SSSEEEEEEEETTCSEEEEEEE-ETTS-HHHHHHHHHHHHH-HHTT-CHH--------HHGEEEEETTSSEEE-SSS-G-
T ss_pred CCCeEEEEEEEcCCCcEEEEEE-CCCCCHHHHHHHHHHHHH-hhcCCccc--------ccCEEEEecCceEEeeCCeee-
Confidence 456799999 55 477799999 888999999887777621 10000000 01344433 44555
Q ss_pred cccchhhhhCCCCCCEEEEEeee
Q psy2972 114 NEKSLLSELGIESQCEITFVKRL 136 (143)
Q Consensus 114 ~d~~tL~dyGI~~g~tl~fv~rl 136 (143)
.+...++++ ++.|-.++|+..-
T Consensus 82 ~~y~yIr~c-l~~~~~~~L~Lv~ 103 (106)
T PF00794_consen 82 SQYEYIRQC-LKRGKDPHLVLVH 103 (106)
T ss_dssp GGBHHHHHH-HHCT--EEEEEEE
T ss_pred eccHHHHHH-HhcCCCcEEEEEe
Confidence 356666666 7777788887643
No 158
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=32.23 E-value=1.3e+02 Score=18.88 Aligned_cols=32 Identities=6% Similarity=0.279 Sum_probs=24.4
Q ss_pred CHHHHHhHHhhccCCcEEEEEEeCCceEEEEe
Q psy2972 32 TVEEIKSEMELLHGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 32 t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V 63 (143)
+.+++...++-..|..+.+.+..+|+.+.+.+
T Consensus 46 ~~~~~~~~l~~~~~~~~~l~v~r~~~~~~~~l 77 (79)
T cd00989 46 SWEDLVDAVQENPGKPLTLTVERNGETITLTL 77 (79)
T ss_pred CHHHHHHHHHHCCCceEEEEEEECCEEEEEEe
Confidence 56788888876667888888855777777766
No 159
>smart00360 RRM RNA recognition motif.
Probab=32.09 E-value=1.1e+02 Score=17.67 Aligned_cols=52 Identities=25% Similarity=0.401 Sum_probs=35.4
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeC--Cce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QAD--NKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~--g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++.||..+|-++|...++ .+|.--.+.+ ... +.. +.+. .-.|..+.+.++..
T Consensus 1 i~~l~~~~~~~~l~~~f~-~~g~v~~~~i~~~~~~~~~~~~a~v---~f~~~~~a~~a~~~ 57 (71)
T smart00360 1 VGNLPPDVTEEELRELFS-KFGKIESVRLVRDKDTGKSKGFAFV---EFESEEDAEKALEA 57 (71)
T ss_pred CCCCCcccCHHHHHHHHH-hhCCEeEEEEEeCCCCCCCCceEEE---EeCCHHHHHHHHHH
Confidence 357899999999999887 7787666777 432 222 3332 23678888888765
No 160
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=31.15 E-value=1e+02 Score=21.43 Aligned_cols=26 Identities=12% Similarity=0.344 Sum_probs=23.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHHhH
Q psy2972 57 KKFDIVISPKNTRVSDLKRTIERQITM 83 (143)
Q Consensus 57 ~~~~V~V~~~~aTV~dLK~aI~~~~~~ 83 (143)
..+.+.| +..||=.|+|++|+..|..
T Consensus 21 n~~tF~V-~~~atK~~Ik~aie~iy~V 46 (91)
T PF00276_consen 21 NQYTFEV-DPRATKTEIKEAIEKIYGV 46 (91)
T ss_dssp SEEEEEE-TTTSTHHHHHHHHHHHHTS
T ss_pred CEEEEEE-eCCCCHHHHHHHHHhhcCC
Confidence 5688999 9999999999999999853
No 161
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=30.90 E-value=66 Score=22.33 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=18.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHH
Q psy2972 59 FDIVISPKNTRVSDLKRTIERQI 81 (143)
Q Consensus 59 ~~V~V~~~~aTV~dLK~aI~~~~ 81 (143)
+++.| +.+||+.++|..+-+.-
T Consensus 2 i~l~v-~~~aTl~~IK~~lw~~A 23 (78)
T smart00143 2 VTLRV-LREATLSTIKHELFKQA 23 (78)
T ss_pred eeEEc-cccccHHHHHHHHHHHH
Confidence 56788 88899999999887764
No 162
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=30.70 E-value=1.9e+02 Score=20.25 Aligned_cols=35 Identities=6% Similarity=0.155 Sum_probs=25.5
Q ss_pred EEEEEeCCceEEEEecC----CCCcHHHHHHHHHHHHhH
Q psy2972 49 MCCIQADNKKFDIVISP----KNTRVSDLKRTIERQITM 83 (143)
Q Consensus 49 ~l~Vk~~g~~~~V~V~~----~~aTV~dLK~aI~~~~~~ 83 (143)
.|+|+.+|...-+.++. ++.+..+|+..|.+.|.+
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l 40 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSL 40 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCC
Confidence 35556667776666622 368999999999999854
No 163
>PF08455 SNF2_assoc: Bacterial SNF2 helicase associated; InterPro: IPR013663 This domain is found in bacterial proteins of the SWF/SNF/SWI helicase family to the N terminus of the SNF2 family N-terminal domain (IPR000330 from INTERPRO) and together with the Helicase conserved C-terminal domain (IPR001650 from INTERPRO). The function of the domain is not clear [].
Probab=30.51 E-value=1.1e+02 Score=25.99 Aligned_cols=102 Identities=19% Similarity=0.318 Sum_probs=57.7
Q ss_pred cHHHHHHHHHHHHHhhccCCcccCCCCCCCHHHHHhHHhhccCCcEEEEEEeCC--ceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 3 DLDQLLTETKEAIKNIRTQNTLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADN--KKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 3 ~~~~~~~~~~~~l~~il~d~~L~dlp~~~t~~ev~~~ial~~g~am~l~Vk~~g--~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+-+++.+.+.+.|..+-+ +- +|-.++--..+.+.....+++.|+.++ .-++|.+....-+-.||+..+...
T Consensus 216 ~~e~~~~Fl~~glp~L~~------~g-eV~~s~~~k~~~~~~~~~~~v~v~~~~~~~lLei~f~~~~i~~~El~~iL~a~ 288 (377)
T PF08455_consen 216 DEEKIYDFLKEGLPKLQE------LG-EVYYSDAFKNLKIRKKPSISVGVSVNSEGDLLEISFDSDDIDPEELADILKAY 288 (377)
T ss_pred CHHHHHHHHHHHHHHhhe------ee-EEEECHHHhhhhccCCCCceEEEEECCCCCeEEEEEEeCCCCHHHHHHHHHHH
Confidence 344556666666654433 22 344445444455555555666664444 777777744678889999877774
Q ss_pred HhHhHhhcccccccccccccceEEEeeCCcccccc-------cchhhhhCCCCCC
Q psy2972 81 ITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNE-------KSLLSELGIESQC 128 (143)
Q Consensus 81 ~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d-------~~tL~dyGI~~g~ 128 (143)
|++ +.|.-.-+|.-+.-+ ...+.++|+++++
T Consensus 289 ------~~k-----------kkY~rLknG~~l~L~~~~l~~l~~ll~~l~l~~~~ 326 (377)
T PF08455_consen 289 ------REK-----------KKYYRLKNGSFLDLEDEELEELSELLDDLGLSNKD 326 (377)
T ss_pred ------HhC-----------CCEEECCCCCEEecChHHHHHHHHHHHHhCCChhh
Confidence 232 234444455444222 4566678887643
No 164
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=30.35 E-value=1.2e+02 Score=17.69 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=38.1
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCC---c-eEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADN---K-KFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g---~-~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+++.||..+|-+++...++- +|....+.+ +... . .--|.. .|..+.+.|+...
T Consensus 3 ~i~~l~~~~~~~~i~~~~~~-~g~i~~~~~~~~~~~~~~~~~~v~f----~s~~~a~~a~~~~ 60 (74)
T cd00590 3 FVGNLPPDVTEEDLRELFSK-FGKVESVRIVRDKDTKSKGFAFVEF----EDEEDAEKALEAL 60 (74)
T ss_pred EEeCCCCccCHHHHHHHHHh-cCCEEEEEEeeCCCCCcceEEEEEE----CCHHHHHHHHHHh
Confidence 36789999999999999977 488778888 4332 2 233333 5788888888763
No 165
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=30.28 E-value=2.2e+02 Score=20.75 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=44.0
Q ss_pred hccCCcEEEEE-EeCCce------EEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCccccc
Q psy2972 42 LLHGQSIMCCI-QADNKK------FDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTN 114 (143)
Q Consensus 42 l~~g~am~l~V-k~~g~~------~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~ 114 (143)
-.+...+=|.| +..++. -.+.| +.+.||.++...|.....+.++ ..+.|.-++ .+..
T Consensus 19 ~kyp~~iPVIvE~~~~~~~p~l~k~KflV-p~~~tv~~f~~~irk~l~l~~~--------------~slfl~Vn~-~~p~ 82 (112)
T cd01611 19 AKYPDRIPVIVERYPKSDLPDLDKKKYLV-PSDLTVGQFVYIIRKRIQLRPE--------------KALFLFVNN-SLPP 82 (112)
T ss_pred HHCCCceEEEEEEcCCCCcccccCceEEe-cCCCCHHHHHHHHHHHhCCCcc--------------ceEEEEECC-ccCC
Confidence 36777788888 766433 34467 8899999999999887644333 234444455 4544
Q ss_pred ccchhhh----hCCCCC
Q psy2972 115 EKSLLSE----LGIESQ 127 (143)
Q Consensus 115 d~~tL~d----yGI~~g 127 (143)
-+.++.+ |+-.||
T Consensus 83 ~~~~~~~lY~~~kd~DG 99 (112)
T cd01611 83 TSATMSQLYEEHKDEDG 99 (112)
T ss_pred chhHHHHHHHHhCCCCC
Confidence 4555554 554444
No 166
>PLN03213 repressor of silencing 3; Provisional
Probab=29.44 E-value=2e+02 Score=27.14 Aligned_cols=55 Identities=9% Similarity=0.126 Sum_probs=47.0
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
...|+.++|-+++...++ ++|.--.|.| +.+|+.|.++= ....+..++.++|...
T Consensus 15 VGNLSydVTEDDLravFS-eFGsVkdVEIpRETGRGFAFVE-MssdddaEeeKAISaL 70 (759)
T PLN03213 15 VGGLGESVGRDDLLKIFS-PMGTVDAVEFVRTKGRSFAYID-FSPSSTNSLTKLFSTY 70 (759)
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeeEEEEecccCCceEEEE-ecCCcHHHHHHHHHHh
Confidence 347999999999999987 7799999999 99999999877 6766788999999853
No 167
>CHL00030 rpl23 ribosomal protein L23
Probab=29.37 E-value=96 Score=22.05 Aligned_cols=27 Identities=11% Similarity=0.254 Sum_probs=23.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHHhH
Q psy2972 56 NKKFDIVISPKNTRVSDLKRTIERQITM 83 (143)
Q Consensus 56 g~~~~V~V~~~~aTV~dLK~aI~~~~~~ 83 (143)
...+.+.| +..||=.|+|+||+..|..
T Consensus 19 ~n~y~F~V-~~~anK~eIK~avE~lf~V 45 (93)
T CHL00030 19 KNQYTFDV-DSGSTKTEIKHWIELFFGV 45 (93)
T ss_pred CCEEEEEE-CCCCCHHHHHHHHHHHhCC
Confidence 45788999 9999999999999999863
No 168
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=29.18 E-value=1e+02 Score=18.33 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=18.3
Q ss_pred EEEEeCCceEEEEecCCCCcHHHHHH
Q psy2972 50 CCIQADNKKFDIVISPKNTRVSDLKR 75 (143)
Q Consensus 50 l~Vk~~g~~~~V~V~~~~aTV~dLK~ 75 (143)
|+|..+|+...+.. ...||.++=+
T Consensus 2 Vtv~~dG~~~~v~T--~a~tV~~~L~ 25 (43)
T PF03990_consen 2 VTVTVDGKEKTVYT--TASTVGDALK 25 (43)
T ss_pred EEEEECCEEEEEEe--CCCCHHHHHH
Confidence 56677999998887 5579988643
No 169
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]
Probab=29.14 E-value=36 Score=30.75 Aligned_cols=24 Identities=13% Similarity=0.340 Sum_probs=20.7
Q ss_pred cchhhhhCCCCCCEEEEEeeeccc
Q psy2972 116 KSLLSELGIESQCEITFVKRLKDK 139 (143)
Q Consensus 116 ~~tL~dyGI~~g~tl~fv~rlr~k 139 (143)
..-+...|++||+|+.|-+++||-
T Consensus 54 eEaI~~sGlkdGMTiSFHH~fR~G 77 (513)
T COG3051 54 EEAIRRSGLKDGMTISFHHAFRGG 77 (513)
T ss_pred HHHHHHhCccCCeEEEeeehhcCC
Confidence 456677899999999999999984
No 170
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=29.07 E-value=47 Score=21.31 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=16.6
Q ss_pred cchhhhhCCCCCCEEEEEee
Q psy2972 116 KSLLSELGIESQCEITFVKR 135 (143)
Q Consensus 116 ~~tL~dyGI~~g~tl~fv~r 135 (143)
-..|.++||..|++++++.+
T Consensus 25 ~~~L~~lGl~~G~~i~v~~~ 44 (74)
T PF04023_consen 25 LRRLADLGLTPGSEITVIRK 44 (74)
T ss_dssp HHHHHHCT-STTEEEEEEEE
T ss_pred HHHHHHCCCCCCCEEEEEEe
Confidence 36899999999999999965
No 171
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=28.88 E-value=1.1e+02 Score=20.95 Aligned_cols=26 Identities=19% Similarity=0.533 Sum_probs=23.2
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHHhH
Q psy2972 57 KKFDIVISPKNTRVSDLKRTIERQITM 83 (143)
Q Consensus 57 ~~~~V~V~~~~aTV~dLK~aI~~~~~~ 83 (143)
..+.+.| +..||=.|+|+||+..|..
T Consensus 15 n~y~F~V-~~~anK~eIK~avE~lf~V 40 (77)
T TIGR03636 15 NKLTFIV-DRKATKGDIKRAVEKLFDV 40 (77)
T ss_pred CEEEEEE-CCCCCHHHHHHHHHHHhCC
Confidence 5789999 9999999999999999853
No 172
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=28.83 E-value=19 Score=31.17 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=0.0
Q ss_pred cEEEEE-EeCCceEEEEecC----CCCcHHHHHHHHHHHHhHhH---hhccccc-ccccccccceEEEeeCCcccccccc
Q psy2972 47 SIMCCI-QADNKKFDIVISP----KNTRVSDLKRTIERQITMQM---KRKGLSK-QISWRHVWKSYWLSFDGIKLTNEKS 117 (143)
Q Consensus 47 am~l~V-k~~g~~~~V~V~~----~~aTV~dLK~aI~~~~~~~~---~reg~~~-~IsW~~vw~~~~Lif~gkkL~~d~~ 117 (143)
++.|.+ .+-+-.+++.++. .+.||.|||.+++..+.-.. ..++++. +|- =....|.|+.+.+ -|.+
T Consensus 78 sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik----~~~~~lL~~kkPv-~~~k 152 (309)
T PF12754_consen 78 SITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIK----NFRCRLLYKKKPV-GDSK 152 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhh----hhhhhheecCccC-CCcC
Confidence 466666 5556666555522 25799999999999653111 1233321 000 0122388988888 5788
Q ss_pred hhhhhCCC-------CCCEEEEEe
Q psy2972 118 LLSELGIE-------SQCEITFVK 134 (143)
Q Consensus 118 tL~dyGI~-------~g~tl~fv~ 134 (143)
+|.+..=. .|.++-|..
T Consensus 153 tl~e~l~~~~~~l~~~~~~vE~gv 176 (309)
T PF12754_consen 153 TLAEVLADSESRLLSGGKEVEFGV 176 (309)
T ss_dssp ------------------------
T ss_pred cHHHHHhcccchhccCCceEEEEE
Confidence 98887544 366666644
No 173
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=28.83 E-value=19 Score=23.04 Aligned_cols=20 Identities=45% Similarity=1.062 Sum_probs=15.0
Q ss_pred ccccccccceEEEeeCCcccccccc
Q psy2972 93 QISWRHVWKSYWLSFDGIKLTNEKS 117 (143)
Q Consensus 93 ~IsW~~vw~~~~Lif~gkkL~~d~~ 117 (143)
++.|.- |++|+|++|.++.+
T Consensus 17 kvdWd~-----wvSf~GrPltdevK 36 (49)
T PF06543_consen 17 KVDWDK-----WVSFDGRPLTDEVK 36 (49)
T ss_pred ccchHH-----heeeCCeeCCHHHH
Confidence 466755 89999999976543
No 174
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=28.55 E-value=1.8e+02 Score=20.48 Aligned_cols=34 Identities=6% Similarity=0.100 Sum_probs=29.2
Q ss_pred EEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhH
Q psy2972 49 MCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITM 83 (143)
Q Consensus 49 ~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~ 83 (143)
-|.| ..||++-.+.| +...|+.|+=+.+..+.+.
T Consensus 4 vvkv~~~Dg~sK~l~V-~~~~Ta~dV~~~L~~K~h~ 38 (85)
T cd01787 4 VVKVYSEDGASKSLEV-DERMTARDVCQLLVDKNHC 38 (85)
T ss_pred EEEEEecCCCeeEEEE-cCCCcHHHHHHHHHHHhCC
Confidence 4677 88999999999 9999999999988887543
No 175
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=28.49 E-value=1.6e+02 Score=25.30 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=39.5
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||..+|-++|+..++ .+|.-..+.| +. +|++ +.++ .-++..+..+||+..
T Consensus 197 fV~nLp~~vtee~L~~~F~-~fG~V~~v~i~~d~~tg~~kG~aFV---~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 197 YVTNLPRTITDDQLDTIFG-KYGQIVQKNILRDKLTGTPRGVAFV---RFNKREEAQEAISAL 255 (346)
T ss_pred EEeCCCCcccHHHHHHHHH-hcCCEEEEEEeecCCCCccceEEEE---EECCHHHHHHHHHHh
Confidence 5568999999999998874 6787666666 33 4544 3332 347899999999985
No 176
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=27.99 E-value=1.7e+02 Score=18.89 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=36.4
Q ss_pred CCCCCCCHHHHHhHHhhccCC---cEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 26 HLPQDVTVEEIKSEMELLHGQ---SIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 26 dlp~~~t~~ev~~~ial~~g~---am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
.+|+.+|.+|+.+.|+-.++. .++|.- -.+|. -|.+ .+=.||..|++..
T Consensus 16 ~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd--~v~l----~sd~Dl~~a~~~~ 68 (81)
T smart00666 16 SVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGD--LVSL----TSDEDLEEAIEEY 68 (81)
T ss_pred EECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCC--EEEe----cCHHHHHHHHHHH
Confidence 588999999999999887775 566666 33466 4455 3456999999886
No 177
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=27.86 E-value=19 Score=29.10 Aligned_cols=35 Identities=20% Similarity=0.576 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhcc--CCcccCCCCCCCHHHHHh
Q psy2972 4 LDQLLTETKEAIKNIRT--QNTLSHLPQDVTVEEIKS 38 (143)
Q Consensus 4 ~~~~~~~~~~~l~~il~--d~~L~dlp~~~t~~ev~~ 38 (143)
.+|-|+.....++.+.+ |..|+++|..++++++.|
T Consensus 67 iEe~i~~~~~~l~~~~~~l~~~l~~~p~~i~i~~~~s 103 (217)
T PF08900_consen 67 IEEKINEARQELQELIARLDALLAELPKGISISEIQS 103 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCCcccccccc
Confidence 56778888888888888 888999999999988765
No 178
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=27.74 E-value=2.1e+02 Score=22.69 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=25.3
Q ss_pred cEEEEE-EeC-------CceEEEEecCCCCcHHHHHHHHHHHHhHhH
Q psy2972 47 SIMCCI-QAD-------NKKFDIVISPKNTRVSDLKRTIERQITMQM 85 (143)
Q Consensus 47 am~l~V-k~~-------g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~ 85 (143)
.+-|.| -.. |.+|-+.| .++.|..++|+.|++++.+..
T Consensus 115 ~~li~V~hf~k~~~~~hGiPF~f~v-~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 115 EKLIPVFHFHKDPSRTHGIPFLFVV-KPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp EEEEEEEEESSSTT-EEEEEEEEEE-ETT--HHHHHHHHHHHH---H
T ss_pred ceEEEEEEEecCccccCCCCEEEEe-eCCCcHHHHHHHHHHHhCCCh
Confidence 366666 333 44588999 888899999999999986544
No 179
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=27.61 E-value=1.1e+02 Score=22.00 Aligned_cols=28 Identities=11% Similarity=0.376 Sum_probs=24.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHHhHh
Q psy2972 56 NKKFDIVISPKNTRVSDLKRTIERQITMQ 84 (143)
Q Consensus 56 g~~~~V~V~~~~aTV~dLK~aI~~~~~~~ 84 (143)
...+.+.| .+.||=.++|+||++.|...
T Consensus 21 ~nk~vF~V-~~~AtK~~IK~AvE~lF~Vk 48 (94)
T COG0089 21 ENKYVFIV-DPDATKPEIKAAVEELFGVK 48 (94)
T ss_pred CCEEEEEE-CCCCCHHHHHHHHHHHhCCe
Confidence 35688899 99999999999999999743
No 180
>TIGR03761 ICE_PFL4669 integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=27.58 E-value=33 Score=28.09 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhcc--CCcccCCCCCCCHHHHHh
Q psy2972 4 LDQLLTETKEAIKNIRT--QNTLSHLPQDVTVEEIKS 38 (143)
Q Consensus 4 ~~~~~~~~~~~l~~il~--d~~L~dlp~~~t~~ev~~ 38 (143)
.++-++.....++.+++ |-.|+.+|..++++|+.|
T Consensus 65 ~E~~l~~~~~~l~~~~~~l~~~l~~~p~~l~ls~~~s 101 (216)
T TIGR03761 65 IEEKLLSARQEMQALLQRLDDLLAQLPPALDLSENLS 101 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhccC
Confidence 46777778888888888 888999999999997654
No 181
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=27.43 E-value=1.1e+02 Score=21.52 Aligned_cols=27 Identities=11% Similarity=0.348 Sum_probs=23.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHHhH
Q psy2972 56 NKKFDIVISPKNTRVSDLKRTIERQITM 83 (143)
Q Consensus 56 g~~~~V~V~~~~aTV~dLK~aI~~~~~~ 83 (143)
...+.+.| +..||=.|+|++|+..|..
T Consensus 20 ~n~~~F~V-~~~a~K~eIK~aie~lf~V 46 (92)
T PRK05738 20 QNKYVFEV-APDATKPEIKAAVEKLFGV 46 (92)
T ss_pred CCEEEEEE-CCCCCHHHHHHHHHHHcCC
Confidence 45788999 9999999999999999864
No 182
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=27.22 E-value=92 Score=22.33 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=28.6
Q ss_pred hHHhhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHH
Q psy2972 38 SEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQI 81 (143)
Q Consensus 38 ~~ial~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~ 81 (143)
++-...-|..=.+.| ..+|-.|.|+| |.+.-+..-|++|++--
T Consensus 26 syteslagkrem~iitf~ngatfqvev-pgsqhi~sqkk~iermk 69 (102)
T PF01376_consen 26 SYTESLAGKREMVIITFKNGATFQVEV-PGSQHIDSQKKAIERMK 69 (102)
T ss_dssp EEEEEESTTEEEEEEEETTS-EEEE---SSTTSTTTHHHHHHHHH
T ss_pred HHHHhhcCceeEEEEEecCCcEEEEec-CCccchhhhHHHHHHHH
Confidence 333444566555666 77899999999 88888888888888753
No 183
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=27.21 E-value=1.6e+02 Score=25.39 Aligned_cols=53 Identities=25% Similarity=0.321 Sum_probs=38.1
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
|..+||.++|-+||...++ .+|.-..+.| +. ++++ +.++- -+|..+-++|++.
T Consensus 111 fVgnLp~~~te~~L~~lF~-~~G~V~~v~i~~d~~tg~srGyaFVe---F~~~e~A~~Ai~~ 168 (346)
T TIGR01659 111 IVNYLPQDMTDRELYALFR-TIGPINTCRIMRDYKTGYSFGYAFVD---FGSEADSQRAIKN 168 (346)
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCccCcEEEEE---EccHHHHHHHHHH
Confidence 4458999999999999997 4787666666 32 3443 44433 4688899999876
No 184
>PF02301 HORMA: HORMA domain; InterPro: IPR003511 The HORMA (for Hop1p, Rev7p and MAD2) domain has been suggested to recognise chromatin states that result from DNA adducts, double stranded breaks or non-attachment to the spindle and acts as an adaptor that recruits other proteins. Hop1 is a meiosis-specific protein, Rev7 is required for DNA damage induced mutagenesis, and MAD2 is a spindle checkpoint protein which prevents progression of the cell cycle upon detection of a defect in mitotic spindle integrity [, ].; GO: 0007067 mitosis; PDB: 3ABD_B 3ABE_C 4AEZ_H 2V64_A 2VFX_A 1GO4_D 2QYF_C 3GMH_B 1KLQ_A 1S2H_A ....
Probab=26.95 E-value=57 Score=25.19 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=24.5
Q ss_pred CcHHHHHHHHHHHHHhhcc-CCcccCCCCCCC
Q psy2972 2 KDLDQLLTETKEAIKNIRT-QNTLSHLPQDVT 32 (143)
Q Consensus 2 ~~~~~~~~~~~~~l~~il~-d~~L~dlp~~~t 32 (143)
.+.+++-+.++..|+.|.. ...|..||.+.+
T Consensus 127 ~~~~~~~~~~~~~lr~l~~~~~~L~~LP~~~~ 158 (208)
T PF02301_consen 127 ITLDEVQEQLRALLRKLISSTQSLPPLPDERT 158 (208)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCTSSS--TTSS
T ss_pred CCHHHHHHHHHHHHHHHHHHhccCCCccCCce
Confidence 4678888999999999998 889999988764
No 185
>PRK12765 flagellar capping protein; Provisional
Probab=26.93 E-value=1.3e+02 Score=28.01 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=28.8
Q ss_pred CcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 46 QSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 46 ~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
.++++++..+|+.++|.| +..+|+.+|..+|...
T Consensus 131 gt~tlti~~~g~~~tI~i-~~~~TL~dl~~aIN~a 164 (595)
T PRK12765 131 GETDLTIFSNGKEYTITV-DKSTTYRDLADKINEA 164 (595)
T ss_pred CceEEEEEeCCEEEEEEE-CCCCCHHHHHHHHhcC
Confidence 456777777899999999 8889999999999874
No 186
>PF14268 YoaP: YoaP-like
Probab=26.66 E-value=45 Score=20.74 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=12.7
Q ss_pred ccceEEEeeCCcccc
Q psy2972 99 VWKSYWLSFDGIKLT 113 (143)
Q Consensus 99 vw~~~~Lif~gkkL~ 113 (143)
+|.+|+|.|+|+=+.
T Consensus 19 pft~yalFYnGkfiT 33 (44)
T PF14268_consen 19 PFTTYALFYNGKFIT 33 (44)
T ss_pred ceeEEEEEECCEEEE
Confidence 578999999998664
No 187
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=26.40 E-value=1.1e+02 Score=22.21 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHHhhccCCcccCCCC---CCCHHHHHhHH
Q psy2972 3 DLDQLLTETKEAIKNIRTQNTLSHLPQ---DVTVEEIKSEM 40 (143)
Q Consensus 3 ~~~~~~~~~~~~l~~il~d~~L~dlp~---~~t~~ev~~~i 40 (143)
|..++-++++..+..-++..+|++.++ ++|.|.+--.|
T Consensus 50 Df~~lk~~~~~~~~~~lDH~~Ln~~~~~~~~pT~Enia~~i 90 (124)
T TIGR00039 50 DFSDLKKIVKEVIDEPLDHKLLNDDVNYLENPTSENVAVYI 90 (124)
T ss_pred EHHHHHHHHHHHhccCCCCceeccCCCCCCCCCHHHHHHHH
Confidence 566777777777776678899997754 68988775555
No 188
>KOG2689|consensus
Probab=26.13 E-value=1.3e+02 Score=25.79 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=47.5
Q ss_pred EEEEEEe-CCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCccc--ccccchhhhhCC
Q psy2972 48 IMCCIQA-DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKL--TNEKSLLSELGI 124 (143)
Q Consensus 48 m~l~Vk~-~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL--~~d~~tL~dyGI 124 (143)
-+|-|++ ||+.+..++ ++..|..+++.-|..... +|..+ -+|..-|=-.-+ .+..+.|+.+|+
T Consensus 211 crlQiRl~DG~Tl~~tF-~a~E~L~~VR~wVd~n~~-----~~~~P--------~~f~t~fPR~tf~edD~~KpLq~L~L 276 (290)
T KOG2689|consen 211 CRLQIRLPDGQTLTQTF-NARETLAAVRLWVDLNRG-----DGLDP--------YSFHTGFPRVTFTEDDELKPLQELDL 276 (290)
T ss_pred eEEEEEcCCCCeeeeec-CchhhHHHHHHHHHHhcc-----CCCCC--------eeeecCCCceecccccccccHHHhcc
Confidence 5666666 899999999 888999999999988752 23201 122222222222 233689999999
Q ss_pred CCCCEEEE
Q psy2972 125 ESQCEITF 132 (143)
Q Consensus 125 ~~g~tl~f 132 (143)
-+.++|.+
T Consensus 277 ~Psa~lil 284 (290)
T KOG2689|consen 277 VPSAVLIL 284 (290)
T ss_pred ccchheec
Confidence 88877754
No 189
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=25.86 E-value=1.3e+02 Score=20.96 Aligned_cols=26 Identities=19% Similarity=0.497 Sum_probs=23.2
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHHhH
Q psy2972 57 KKFDIVISPKNTRVSDLKRTIERQITM 83 (143)
Q Consensus 57 ~~~~V~V~~~~aTV~dLK~aI~~~~~~ 83 (143)
..+.+.| +..||=.++|+||+..|..
T Consensus 22 n~y~F~V-~~~anK~eIK~AvE~lf~V 47 (84)
T PRK14548 22 NKLTFIV-DRRATKPDIKRAVEELFDV 47 (84)
T ss_pred CEEEEEE-CCCCCHHHHHHHHHHHhCC
Confidence 5789999 9999999999999999853
No 190
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=25.84 E-value=1.5e+02 Score=25.10 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=25.9
Q ss_pred ccCCcEEEEE-EeCC--------ceEEEEecCC-CCcHHHHHHHHHHH
Q psy2972 43 LHGQSIMCCI-QADN--------KKFDIVISPK-NTRVSDLKRTIERQ 80 (143)
Q Consensus 43 ~~g~am~l~V-k~~g--------~~~~V~V~~~-~aTV~dLK~aI~~~ 80 (143)
+..+.|++.| |.+. +.|.|.+ .+ ..||.|.=..|++.
T Consensus 39 ~~~~~~~~~i~R~~p~~~~~~~~~~y~v~~-~~~~~tVLd~L~~Ik~~ 85 (276)
T PLN00129 39 KPSNLKEFQIYRWNPDNPGKPHLQSYKVDL-NDCGPMVLDVLIKIKNE 85 (276)
T ss_pred CCCceEEEEEEeeCCCCCCCceeEEEEeCC-CCCCchHHHHHHHHHHc
Confidence 3445699999 7763 2256665 43 68999999999874
No 191
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=25.06 E-value=1.4e+02 Score=22.28 Aligned_cols=37 Identities=35% Similarity=0.511 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhccCCcc-----------cCCCCCCCHHHHHhHHhhcc
Q psy2972 8 LTETKEAIKNIRTQNTL-----------SHLPQDVTVEEIKSEMELLH 44 (143)
Q Consensus 8 ~~~~~~~l~~il~d~~L-----------~dlp~~~t~~ev~~~ial~~ 44 (143)
++...+.|..+++++.+ .|+|...+.+|+...+.++.
T Consensus 97 l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~ 144 (175)
T PF00025_consen 97 LQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEK 144 (175)
T ss_dssp HHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGG
T ss_pred ecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhh
Confidence 55566667777775544 27888899999999988775
No 192
>KOG0070|consensus
Probab=24.83 E-value=1.3e+02 Score=24.09 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhccCCccc-----------CCCCCCCHHHHHhHHhhcc
Q psy2972 7 LLTETKEAIKNIRTQNTLS-----------HLPQDVTVEEIKSEMELLH 44 (143)
Q Consensus 7 ~~~~~~~~l~~il~d~~L~-----------dlp~~~t~~ev~~~ial~~ 44 (143)
=++..++.|..++++|.|. |+|...|..|+...++|+.
T Consensus 99 Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~ 147 (181)
T KOG0070|consen 99 RIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHS 147 (181)
T ss_pred HHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhc
Confidence 3455899999999966543 5888999999999998864
No 193
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.49 E-value=1.2e+02 Score=21.91 Aligned_cols=35 Identities=23% Similarity=0.150 Sum_probs=25.3
Q ss_pred cceEEEeeCCcccccccchhhh--hCCCCCCEEEEEeeeccc
Q psy2972 100 WKSYWLSFDGIKLTNEKSLLSE--LGIESQCEITFVKRLKDK 139 (143)
Q Consensus 100 w~~~~Lif~gkkL~~d~~tL~d--yGI~~g~tl~fv~rlr~k 139 (143)
+...||+.+- |...+.. |.+++||.+.|+--+.|+
T Consensus 60 pGiI~LINd~-----DWeLleke~y~ledgDiIvfistlHGg 96 (96)
T COG5131 60 PGIICLINDM-----DWELLEKERYPLEDGDIIVFISTLHGG 96 (96)
T ss_pred ccEEEEEcCc-----cHhhhhcccccCCCCCEEEEEecccCC
Confidence 3455666432 4556655 999999999999988774
No 194
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=24.33 E-value=1.3e+02 Score=22.94 Aligned_cols=69 Identities=20% Similarity=0.435 Sum_probs=44.7
Q ss_pred CCCHHHHHhHHhhccCCcE-EEEE-EeC-CceEEEEecCCCCcHHHHHHHHHHHHhH------hHhhccccccccccccc
Q psy2972 30 DVTVEEIKSEMELLHGQSI-MCCI-QAD-NKKFDIVISPKNTRVSDLKRTIERQITM------QMKRKGLSKQISWRHVW 100 (143)
Q Consensus 30 ~~t~~ev~~~ial~~g~am-~l~V-k~~-g~~~~V~V~~~~aTV~dLK~aI~~~~~~------~~~reg~~~~IsW~~vw 100 (143)
..|+|.++.-|.+--|+.+ .|.+ ..+ |. .|..+|=+.|--+|++.+.+-+.+ +..|+|-+.
T Consensus 47 ~G~lE~vDg~i~IGs~q~~~sV~i~gTPsgn--nv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~-------- 116 (145)
T TIGR02542 47 HGTLEQVDGNIRIGSGQTPASVRIQGTPSGN--NVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPE-------- 116 (145)
T ss_pred eeehhhccCcEEEccCCCcccEEEecCCCCC--ceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCC--------
Confidence 4678888888888878743 4555 332 32 344434456889999999887643 345666443
Q ss_pred ceEEEeeC
Q psy2972 101 KSYWLSFD 108 (143)
Q Consensus 101 ~~~~Lif~ 108 (143)
..|++||-
T Consensus 117 GsYRiCFr 124 (145)
T TIGR02542 117 GSYRICFR 124 (145)
T ss_pred CceEEEEE
Confidence 47788873
No 195
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=24.04 E-value=1.4e+02 Score=23.28 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=25.7
Q ss_pred cCCcEEEEEEeCCceEEEEecCCCCcHHHHHHH
Q psy2972 44 HGQSIMCCIQADNKKFDIVISPKNTRVSDLKRT 76 (143)
Q Consensus 44 ~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~a 76 (143)
+...+.|+++.+|+..++.+ ++..+..|.=+.
T Consensus 3 ~~~~~~i~~~vNG~~~~~~~-~~~~~Ll~~LR~ 34 (159)
T PRK09908 3 HSETITIECTINGMPFQLHA-APGTPLSELLRE 34 (159)
T ss_pred CCCceeEEEEECCEEEEEec-CCCCcHHHHHHH
Confidence 45667777799999999999 888888876553
No 196
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=23.92 E-value=52 Score=22.49 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=14.3
Q ss_pred ccchhhhhCCCCCCEEEEE
Q psy2972 115 EKSLLSELGIESQCEITFV 133 (143)
Q Consensus 115 d~~tL~dyGI~~g~tl~fv 133 (143)
+..+.+.+||++||.|.+.
T Consensus 35 np~dA~~~Gi~~Gd~V~v~ 53 (110)
T PF01568_consen 35 NPEDAAKLGIKDGDWVRVS 53 (110)
T ss_dssp EHHHHHHCT--TTCEEEEE
T ss_pred cHHHHHHhcCcCCCEEEEE
Confidence 4678889999999999875
No 197
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=23.59 E-value=1.2e+02 Score=23.14 Aligned_cols=52 Identities=17% Similarity=0.355 Sum_probs=32.9
Q ss_pred CcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 68 TRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 68 aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
.-...|+++|+++.... .-+.....+.|.-.|.+=|+.-.| ...|.+|||-.
T Consensus 39 pa~e~L~~~I~~aL~~~-Gv~~V~V~i~~~p~Wt~d~it~~g------r~~l~~~giap 90 (146)
T TIGR02159 39 PALEVIRQDIRDAVRAL-GVEVVEVSTSLDPPWTTDWITEDA------REKLREYGIAP 90 (146)
T ss_pred chHHHHHHHHHHHHHhc-CCCeEEEeEeeCCCCChHHCCHHH------HHHHHhcCccC
Confidence 34556888888876321 001123556677778877777555 45788999976
No 198
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=23.28 E-value=62 Score=19.11 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=11.4
Q ss_pred CCCCcHHHHHHHHHHH
Q psy2972 65 PKNTRVSDLKRTIERQ 80 (143)
Q Consensus 65 ~~~aTV~dLK~aI~~~ 80 (143)
+.+.||.+||..+.+.
T Consensus 1 p~sltV~~Lk~iL~~~ 16 (35)
T PF12949_consen 1 PKSLTVAQLKRILDEH 16 (35)
T ss_dssp STT--SHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHc
Confidence 3567999999999885
No 199
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=23.27 E-value=2.5e+02 Score=20.86 Aligned_cols=53 Identities=9% Similarity=0.139 Sum_probs=38.5
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
...||.++|-++|...++ .+|.-..+.| +. ++++ |.++- -++..+..+|++..
T Consensus 39 VgnL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kGfaFV~---F~~~e~A~~Al~~l 96 (144)
T PLN03134 39 IGGLSWGTDDASLRDAFA-HFGDVVDAKVIVDRETGRSRGFGFVN---FNDEGAATAAISEM 96 (144)
T ss_pred EeCCCCCCCHHHHHHHHh-cCCCeEEEEEEecCCCCCcceEEEEE---ECCHHHHHHHHHHc
Confidence 457999999999999997 5888767766 33 3433 55533 46789999999763
No 200
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=23.16 E-value=2e+02 Score=20.44 Aligned_cols=57 Identities=19% Similarity=0.366 Sum_probs=40.4
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE--EeCCceEEEEecCCCCcHHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI--QADNKKFDIVISPKNTRVSDLKRTIERQI 81 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V--k~~g~~~~V~V~~~~aTV~dLK~aI~~~~ 81 (143)
....+|.++|..|+.+.++=..+.+..+++ .+++..++.-| +-.+=+||+..+++.-
T Consensus 25 r~i~V~r~~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Li--sv~~DeDl~~M~~e~~ 83 (97)
T cd06410 25 RIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALI--SVSNDEDLKNMMEEYD 83 (97)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeE--EecCcHHHHHHHHhhc
Confidence 345689999999999999877776554444 77887777333 2234469999998853
No 201
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.05 E-value=66 Score=22.12 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=16.5
Q ss_pred ccchhhhhCCCCCCEEEEEe
Q psy2972 115 EKSLLSELGIESQCEITFVK 134 (143)
Q Consensus 115 d~~tL~dyGI~~g~tl~fv~ 134 (143)
+.++.+.+||++||.|.+.-
T Consensus 40 n~~dA~~lgi~~Gd~V~v~~ 59 (116)
T cd02790 40 NPEDAKRLGIEDGEKVRVSS 59 (116)
T ss_pred CHHHHHHcCCCCCCEEEEEc
Confidence 56788899999999987654
No 202
>smart00455 RBD Raf-like Ras-binding domain.
Probab=22.95 E-value=2.3e+02 Score=18.67 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=25.9
Q ss_pred eCCceEEEEecCCCCcHHHHHHHHHHHHhHhHh
Q psy2972 54 ADNKKFDIVISPKNTRVSDLKRTIERQITMQMK 86 (143)
Q Consensus 54 ~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~ 86 (143)
-+|+...|.+ .+..|+.|.=..+=++..+.++
T Consensus 7 P~~~~~~V~v-rpg~tl~e~L~~~~~kr~l~~~ 38 (70)
T smart00455 7 PDNQRTVVKV-RPGKTVRDALAKALKKRGLNPE 38 (70)
T ss_pred CCCCEEEEEE-CCCCCHHHHHHHHHHHcCCCHH
Confidence 4588889999 8999999998888887665544
No 203
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=22.69 E-value=1.7e+02 Score=20.50 Aligned_cols=31 Identities=6% Similarity=0.178 Sum_probs=25.3
Q ss_pred eCCceEEEEecCCCCcHHHHHHHHHHHHhHhH
Q psy2972 54 ADNKKFDIVISPKNTRVSDLKRTIERQITMQM 85 (143)
Q Consensus 54 ~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~ 85 (143)
..|...-+.+ .++..+.+|+.+|.+++....
T Consensus 8 ~~GrvhRf~~-~~s~~~~~L~~~I~~Rl~~d~ 38 (86)
T cd06409 8 PKGRVHRFRL-RPSESLEELRTLISQRLGDDD 38 (86)
T ss_pred CCCCEEEEEe-cCCCCHHHHHHHHHHHhCCcc
Confidence 3577888888 778999999999999885443
No 204
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=22.61 E-value=1e+02 Score=18.45 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=16.4
Q ss_pred cchhhhhCCCCCCEEEEEeee
Q psy2972 116 KSLLSELGIESQCEITFVKRL 136 (143)
Q Consensus 116 ~~tL~dyGI~~g~tl~fv~rl 136 (143)
.+-...+||+.||+|.+...=
T Consensus 13 k~~~~~l~l~~Gd~v~i~~~~ 33 (47)
T PF04014_consen 13 KEIREKLGLKPGDEVEIEVEG 33 (47)
T ss_dssp HHHHHHTTSSTTTEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEeC
Confidence 455667899999999987653
No 205
>COG4925 Uncharacterized conserved protein [Function unknown]
Probab=22.55 E-value=1.5e+02 Score=23.13 Aligned_cols=38 Identities=11% Similarity=0.240 Sum_probs=32.0
Q ss_pred HHhhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHH
Q psy2972 39 EMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTI 77 (143)
Q Consensus 39 ~ial~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI 77 (143)
.+.-+.|.+|++.. ..+|+...-+. .++||-+|+-+.+
T Consensus 42 ~~s~~~~~tmk~rl~~v~g~~~tatL-nD~atAkdfa~lL 80 (166)
T COG4925 42 ELSQEEGETMKRRLIQVNGETTTATL-NDGATAKDFAELL 80 (166)
T ss_pred ccCcccCCceEEEEEeeCCEEEEEEe-cCChhHHHHHHhC
Confidence 34457889999999 99999999999 8999999887654
No 206
>PRK13817 ribosome-binding factor A; Provisional
Probab=22.02 E-value=98 Score=22.70 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=10.9
Q ss_pred cccccccccccc-eEEE
Q psy2972 90 LSKQISWRHVWK-SYWL 105 (143)
Q Consensus 90 ~~~~IsW~~vw~-~~~L 105 (143)
..+.+.||++|. +|.+
T Consensus 76 l~~~l~lR~~PeL~F~~ 92 (119)
T PRK13817 76 LAQATVLRYVPKLEFVY 92 (119)
T ss_pred HHHhCCCeECCEEEEEE
Confidence 345678999998 5554
No 207
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=21.80 E-value=3e+02 Score=19.40 Aligned_cols=73 Identities=5% Similarity=0.016 Sum_probs=47.1
Q ss_pred EEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCC
Q psy2972 49 MCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQC 128 (143)
Q Consensus 49 ~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~ 128 (143)
++++.-.|..+-..+ +++.|-.+|-+.+.+.+.+.. +.+=.+-|..==...|.+-+...|. ..++=|-+...+
T Consensus 2 ~~K~~y~gdi~it~~-d~~~s~e~L~~~v~~~c~~~~---~q~ft~kw~DEEGDp~tiSS~~EL~---EA~rl~~~n~~~ 74 (83)
T cd06404 2 RVKAAYNGDIMITSI-DPSISLEELCNEVRDMCRFHN---DQPFTLKWIDEEGDPCTISSQMELE---EAFRLYELNKDS 74 (83)
T ss_pred eEEEEecCcEEEEEc-CCCcCHHHHHHHHHHHhCCCC---CCcEEEEEECCCCCceeecCHHHHH---HHHHHHHhcCcc
Confidence 455566788888888 888999999999999987633 2333455555445666666665552 334444444433
No 208
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=21.73 E-value=95 Score=19.73 Aligned_cols=16 Identities=13% Similarity=0.434 Sum_probs=12.8
Q ss_pred EEEEE-EeCCceEEEEe
Q psy2972 48 IMCCI-QADNKKFDIVI 63 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V 63 (143)
|.|++ +.||..|.|..
T Consensus 1 ~~v~L~SsDg~~f~V~~ 17 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSR 17 (62)
T ss_dssp -EEEEEETTSEEEEEEH
T ss_pred CEEEEEcCCCCEEEeeH
Confidence 67888 99999998884
No 209
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=21.72 E-value=2.2e+02 Score=19.60 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHHHHhhccCCcccCCCC--CCCHHHHHhHH
Q psy2972 3 DLDQLLTETKEAIKNIRTQNTLSHLPQ--DVTVEEIKSEM 40 (143)
Q Consensus 3 ~~~~~~~~~~~~l~~il~d~~L~dlp~--~~t~~ev~~~i 40 (143)
|..++-+.++. +..-++..+|+++|+ ++|.|-+--.|
T Consensus 48 Df~~lk~~~~~-i~~~lDh~~Lne~~~~~~pT~E~ia~~i 86 (92)
T TIGR03367 48 DFSDLKAIVKE-VVDRLDHALLNDVPGLENPTAENLARWI 86 (92)
T ss_pred EHHHHHHHHHH-HHHhCCCcEeeCCCCCCCCCHHHHHHHH
Confidence 45556566654 555577899998874 47887765444
No 210
>KOG2013|consensus
Probab=21.70 E-value=2e+02 Score=26.91 Aligned_cols=65 Identities=25% Similarity=0.174 Sum_probs=37.1
Q ss_pred EEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEEe
Q psy2972 60 DIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVK 134 (143)
Q Consensus 60 ~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~ 134 (143)
.+.+.....|+.+|-..|-.. |.+.-+-+|-- ...|+|+-.-=.+.+++|+++||.||+-+-|..
T Consensus 446 ~l~ln~~~~~~~~L~D~ivk~------r~~~~pdvsll----~~~Li~~~d~e~n~~k~lsel~i~ngsli~~~~ 510 (603)
T KOG2013|consen 446 VLELNTRKSTLRDLVDKIVKT------RLGYLPDVSLL----DDDLIDDMDFEDNLDKTLSELGILNGSLINVKD 510 (603)
T ss_pred EEEeccccchHHHHHHHHHHH------HhccCcccchh----hhhhcccccchhhhhhhHHhhCCCCCceEeeec
Confidence 334433558999998766553 33322222311 134555432222357999999999999666554
No 211
>cd00470 PTPS 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.
Probab=21.42 E-value=3.5e+02 Score=20.05 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHhhccCCcccCCC-----CCCCHHHHHhHH
Q psy2972 3 DLDQLLTETKEAIKNIRTQNTLSHLP-----QDVTVEEIKSEM 40 (143)
Q Consensus 3 ~~~~~~~~~~~~l~~il~d~~L~dlp-----~~~t~~ev~~~i 40 (143)
|..++-+.++..|..-++-.+|++.+ .++|.|-+--.|
T Consensus 62 DF~~lk~~l~~~i~~~lDH~~Ln~~~~~~~~~~PTaEniA~~i 104 (135)
T cd00470 62 NLTDLKKAIEEAIMKPLDHKNLDDDVPYFADVVSTTENLAVYI 104 (135)
T ss_pred EHHHHHHHHHHHHHhhcCCceeccccccccCCCCCHHHHHHHH
Confidence 55666677777777778888999863 378887766555
No 212
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=21.39 E-value=99 Score=21.13 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=17.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHH
Q psy2972 58 KFDIVISPKNTRVSDLKRTIERQI 81 (143)
Q Consensus 58 ~~~V~V~~~~aTV~dLK~aI~~~~ 81 (143)
.-.|.+.....+|.|||++|..+-
T Consensus 11 ~~~i~fdG~~Isv~dLKr~I~~~~ 34 (74)
T PF08783_consen 11 YDTITFDGTSISVFDLKREIIEKK 34 (74)
T ss_dssp EEEEEESSSEEEHHHHHHHHHHHH
T ss_pred ccEEEECCCeeEHHHHHHHHHHHh
Confidence 345555335589999999998863
No 213
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=21.32 E-value=2.4e+02 Score=18.23 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=24.4
Q ss_pred CHHHHHhHHhhc-cCCcEEEEEEeCCceEEEEe
Q psy2972 32 TVEEIKSEMELL-HGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 32 t~~ev~~~ial~-~g~am~l~Vk~~g~~~~V~V 63 (143)
+.+++...+.-. .|..+.+.+.++|+...+.+
T Consensus 44 ~~~d~~~~l~~~~~g~~v~l~v~r~g~~~~~~~ 76 (79)
T cd00991 44 TLEDFMEALKPTKPGEVITVTVLPSTTKLTNVS 76 (79)
T ss_pred CHHHHHHHHhcCCCCCEEEEEEEECCEEEEEEE
Confidence 678888887643 47888888866788877776
No 214
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.36 E-value=74 Score=21.88 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=16.4
Q ss_pred ccchhhhhCCCCCCEEEEEe
Q psy2972 115 EKSLLSELGIESQCEITFVK 134 (143)
Q Consensus 115 d~~tL~dyGI~~g~tl~fv~ 134 (143)
+-++.+.+||++||.|.+.-
T Consensus 40 np~dA~~lgi~~Gd~V~v~~ 59 (120)
T cd00508 40 HPEDAARLGIKDGDLVRVSS 59 (120)
T ss_pred CHHHHHHcCCCCCCEEEEEe
Confidence 45688899999999998753
No 215
>KOG0145|consensus
Probab=20.20 E-value=1.6e+02 Score=25.47 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=37.9
Q ss_pred cccCCCCCCCHHHHHhHHhh-ccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMEL-LHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial-~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+.+=||.++|.||++|+..- -.=.+-++.= |..|+++-+-. -.-.+-.|--+||..-
T Consensus 45 IvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGF-VNYv~p~DAe~Aintl 103 (360)
T KOG0145|consen 45 IVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGF-VNYVRPKDAEKAINTL 103 (360)
T ss_pred eeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccce-eeecChHHHHHHHhhh
Confidence 34569999999999999853 2223555555 77788865554 4445566666777653
No 216
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=20.15 E-value=85 Score=20.02 Aligned_cols=17 Identities=29% Similarity=0.718 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHhHHhh
Q psy2972 26 HLPQDVTVEEIKSEMEL 42 (143)
Q Consensus 26 dlp~~~t~~ev~~~ial 42 (143)
|.|.++|++||-..+.+
T Consensus 19 d~PR~~tl~elA~~lgi 35 (53)
T PF04967_consen 19 DVPRRITLEELAEELGI 35 (53)
T ss_pred CCCCcCCHHHHHHHhCC
Confidence 78999999999888765
No 217
>cd02788 MopB_CT_NDH-1_NuoG2-N7 MopB_CT_NDH-1_NuoG2-N7: C-terminal region of the NuoG-like subunit (of the variant with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain, is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups
Probab=20.01 E-value=85 Score=21.45 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=15.6
Q ss_pred ccchhhhhCCCCCCEEEEE
Q psy2972 115 EKSLLSELGIESQCEITFV 133 (143)
Q Consensus 115 d~~tL~dyGI~~g~tl~fv 133 (143)
+-.+.+.+||++||.|.+.
T Consensus 34 np~dA~~lGi~~Gd~V~v~ 52 (96)
T cd02788 34 SPADAARLGLADGDLVEFS 52 (96)
T ss_pred CHHHHHHcCCCCCCEEEEE
Confidence 4567889999999998664
Done!