Query psy2972
Match_columns 143
No_of_seqs 103 out of 234
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 22:17:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2y_A 3300001G02RIK protein; 100.0 3.1E-35 1E-39 212.9 9.6 98 44-142 4-102 (105)
2 3phx_B Ubiquitin-like protein 99.7 7.3E-18 2.5E-22 112.7 9.7 76 46-138 3-79 (79)
3 3mtn_B UBA80, ubcep1, ubiquiti 99.7 7.7E-17 2.6E-21 108.0 8.5 78 45-139 1-79 (85)
4 3dbh_I NEDD8; cell cycle, acti 99.7 6.3E-17 2.2E-21 109.5 8.1 78 44-138 9-87 (88)
5 3v6c_B Ubiquitin; structural g 99.7 8.3E-17 2.9E-21 110.8 8.9 78 43-137 13-91 (91)
6 3n3k_B Ubiquitin; hydrolase, p 99.7 4.1E-17 1.4E-21 109.6 7.1 78 45-139 1-79 (85)
7 4hcn_B Polyubiquitin, ubiquiti 99.7 7E-17 2.4E-21 113.1 8.0 79 43-138 18-97 (98)
8 4fbj_B NEDD8; effector-HOST ta 99.7 8.3E-17 2.9E-21 110.7 8.1 76 48-140 1-77 (88)
9 1ndd_A NEDD8, protein (ubiquit 99.7 1.2E-16 4.1E-21 104.6 8.1 74 48-138 1-75 (76)
10 2uyz_B Small ubiquitin-related 99.7 1E-16 3.5E-21 107.0 7.9 76 46-138 2-78 (79)
11 3a9j_A Ubiquitin; protein comp 99.7 2.3E-16 7.8E-21 103.3 8.5 74 48-138 1-75 (76)
12 1wyw_B Ubiquitin-like protein 99.7 2.9E-16 9.8E-21 110.0 8.3 78 44-138 18-96 (97)
13 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 5.7E-16 2E-20 104.9 9.4 77 46-139 6-83 (87)
14 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 4.3E-16 1.5E-20 107.5 8.5 78 47-141 1-79 (96)
15 1sif_A Ubiquitin; hydrophobic 99.6 4.8E-16 1.6E-20 106.8 8.1 79 44-139 6-85 (88)
16 2hj8_A Interferon-induced 17 k 99.6 6.6E-16 2.3E-20 106.0 8.6 78 46-140 3-81 (88)
17 2kk8_A Uncharacterized protein 99.6 1.4E-15 4.6E-20 104.4 9.7 75 44-135 7-83 (84)
18 3rt3_B Ubiquitin-like protein 99.6 1.1E-15 3.7E-20 114.1 9.9 117 8-141 25-159 (159)
19 3b1l_X E3 ubiquitin-protein li 99.4 1.8E-17 6E-22 109.7 0.0 75 48-139 1-76 (76)
20 1wy8_A NP95-like ring finger p 99.6 1.9E-15 6.7E-20 102.8 10.1 77 46-139 6-85 (89)
21 2faz_A Ubiquitin-like containi 99.6 1.9E-15 6.6E-20 100.4 9.2 73 47-136 2-77 (78)
22 3vdz_A Ubiquitin-40S ribosomal 99.6 1.2E-15 4.1E-20 109.5 8.5 77 45-138 33-110 (111)
23 2dzi_A Ubiquitin-like protein 99.6 1.7E-15 5.7E-20 100.8 8.6 75 46-137 6-81 (81)
24 4eew_A Large proline-rich prot 99.6 1.6E-15 5.5E-20 103.2 8.6 77 41-135 11-88 (88)
25 4dwf_A HLA-B-associated transc 99.6 1.9E-15 6.6E-20 103.2 8.9 77 45-139 3-80 (90)
26 2l7r_A Ubiquitin-like protein 99.6 1.5E-15 5.2E-20 105.6 8.3 76 45-138 17-92 (93)
27 3plu_A Ubiquitin-like modifier 99.6 1.7E-15 5.8E-20 107.5 8.6 73 44-133 18-91 (93)
28 1uh6_A Ubiquitin-like 5; beta- 99.6 2.2E-15 7.6E-20 108.0 8.2 70 47-133 28-98 (100)
29 1yx5_B Ubiquitin; proteasome, 99.6 5.3E-15 1.8E-19 103.0 9.4 75 48-139 1-76 (98)
30 2kan_A Uncharacterized protein 99.6 5.3E-15 1.8E-19 103.4 9.4 77 45-139 13-91 (94)
31 2wyq_A HHR23A, UV excision rep 99.6 8.1E-15 2.8E-19 98.6 10.0 76 46-135 4-80 (85)
32 2ojr_A Ubiquitin; lanthide-bin 99.6 5.2E-15 1.8E-19 105.9 8.4 76 46-138 34-110 (111)
33 3l0w_B Monoubiquitinated proli 99.6 7.1E-15 2.4E-19 112.9 9.3 76 48-140 1-77 (169)
34 2bwf_A Ubiquitin-like protein 99.6 1.3E-14 4.3E-19 95.7 9.2 71 48-135 5-75 (77)
35 1wju_A NEDD8 ultimate buster-1 99.6 4.4E-15 1.5E-19 106.4 7.4 73 49-139 17-94 (100)
36 1we6_A Splicing factor, putati 99.6 1.1E-14 3.6E-19 104.1 9.2 81 43-140 23-108 (111)
37 1uel_A HHR23B, UV excision rep 99.6 1.4E-14 4.9E-19 100.7 9.2 75 48-136 1-76 (95)
38 1wgd_A Homocysteine-responsive 99.6 4.9E-15 1.7E-19 102.4 6.7 80 46-140 6-90 (93)
39 1se9_A Ubiquitin family; ubiqu 99.6 1.3E-14 4.5E-19 107.8 9.5 86 44-139 13-106 (126)
40 1v5o_A 1700011N24RIK protein; 99.6 1E-14 3.5E-19 102.9 8.1 78 47-140 7-89 (102)
41 1wx8_A Riken cDNA 4931431F19; 99.5 7.2E-15 2.5E-19 101.8 6.5 78 46-140 16-93 (96)
42 1ttn_A DC-UBP, dendritic cell- 99.5 2.2E-14 7.6E-19 101.8 9.1 78 44-138 20-98 (106)
43 1yqb_A Ubiquilin 3; structural 99.5 1.7E-14 5.9E-19 101.8 8.5 76 46-139 21-97 (100)
44 2kdi_A Ubiquitin, vacuolar pro 99.5 3.3E-14 1.1E-18 102.6 9.8 80 45-141 7-87 (114)
45 3b08_A Polyubiquitin-C, ubiqui 99.5 4.5E-14 1.6E-18 103.2 10.4 76 46-138 75-151 (152)
46 2klc_A Ubiquilin-1; ubiquitin- 99.5 4.1E-14 1.4E-18 99.9 9.7 82 41-139 19-100 (101)
47 3m62_B UV excision repair prot 99.5 1.2E-14 4.1E-19 103.4 6.9 73 48-137 2-75 (106)
48 3u30_A Ubiquitin, linear DI-ub 99.5 2.4E-14 8.3E-19 108.5 8.8 78 44-138 93-171 (172)
49 2gow_A HCG-1 protein, ubiquiti 99.5 2.8E-14 9.7E-19 105.6 8.4 84 45-138 15-102 (125)
50 3q3f_A Ribonuclease/ubiquitin 99.5 2.7E-14 9.1E-19 112.2 8.6 78 47-141 105-183 (189)
51 4a20_A Ubiquitin-like protein 99.5 4.3E-14 1.5E-18 100.3 8.9 74 45-135 17-95 (98)
52 1j8c_A Ubiquitin-like protein 99.5 4.8E-14 1.7E-18 103.5 9.4 78 44-139 29-107 (125)
53 1we7_A SF3A1 protein; structur 99.5 8.8E-14 3E-18 100.0 10.2 80 44-140 22-112 (115)
54 2lxa_A Ubiquitin-like protein 99.5 1.9E-14 6.6E-19 100.1 6.4 72 48-135 2-77 (87)
55 3u5e_m 60S ribosomal protein L 99.5 1.1E-15 3.9E-20 111.9 0.0 75 48-139 1-76 (128)
56 3u30_A Ubiquitin, linear DI-ub 99.5 6.7E-14 2.3E-18 106.1 9.6 80 43-139 16-96 (172)
57 1wgh_A Ubiquitin-like 3, HCG-1 99.5 7.1E-14 2.4E-18 102.3 9.3 85 46-140 15-103 (116)
58 1wx7_A Ubiquilin 3; ubiquitin- 99.5 4.4E-14 1.5E-18 100.0 7.7 77 46-140 16-93 (106)
59 2kdb_A Homocysteine-responsive 99.5 4.1E-14 1.4E-18 100.5 6.5 73 46-133 22-99 (99)
60 1wia_A Hypothetical ubiquitin- 99.5 4.7E-14 1.6E-18 97.6 6.5 75 46-139 6-81 (95)
61 4ajy_B Transcription elongatio 99.5 1E-13 3.5E-18 102.1 8.5 74 48-138 1-83 (118)
62 1wxv_A BAG-family molecular ch 99.5 2.2E-13 7.4E-18 93.7 9.3 74 46-135 6-84 (92)
63 2daf_A FLJ35834 protein; hypot 99.5 9.1E-14 3.1E-18 102.4 7.4 74 46-136 14-89 (118)
64 3rt3_B Ubiquitin-like protein 99.5 2.4E-13 8.3E-18 101.3 9.4 75 47-138 2-80 (159)
65 2fnj_B Transcription elongatio 99.5 2.6E-13 8.8E-18 99.8 9.1 72 48-136 3-81 (118)
66 3b08_A Polyubiquitin-C, ubiqui 99.5 1.7E-13 5.7E-18 100.2 8.1 75 48-139 1-76 (152)
67 3u5c_f 40S ribosomal protein S 99.5 5.8E-15 2E-19 112.3 0.0 75 48-139 1-76 (152)
68 3m63_B Ubiquitin domain-contai 99.5 3.1E-14 1.1E-18 100.8 3.8 76 43-135 24-99 (101)
69 1v5t_A 8430435I17RIK protein; 99.4 1.8E-13 6.2E-18 94.5 6.2 72 46-134 6-81 (90)
70 2dzj_A Synaptic glycoprotein S 99.4 2.6E-13 8.9E-18 94.1 6.5 71 47-133 10-86 (88)
71 1wgg_A Ubiquitin carboxyl-term 99.4 3.5E-13 1.2E-17 94.5 6.6 72 46-135 6-78 (96)
72 4dbg_A Ranbp-type and C3HC4-ty 99.4 1.3E-12 4.5E-17 94.3 9.7 71 47-134 24-98 (105)
73 2kd0_A LRR repeats and ubiquit 99.4 8.3E-13 2.8E-17 90.4 8.3 70 48-134 13-82 (85)
74 1v86_A DNA segment, CHR 7, way 99.4 4.3E-13 1.5E-17 93.7 6.9 71 46-134 16-86 (95)
75 1x1m_A Ubiquitin-like protein 99.4 7.2E-13 2.5E-17 94.2 7.7 76 47-137 12-101 (107)
76 3ai5_A Yeast enhanced green fl 99.4 1.8E-12 6.2E-17 108.4 8.6 78 43-137 229-307 (307)
77 2io1_B Small ubiquitin-related 99.3 2.9E-12 9.8E-17 90.1 8.0 79 44-139 4-83 (94)
78 2kjr_A CG11242; UBL, ubiquitin 99.3 6.9E-12 2.4E-16 88.3 9.1 72 47-134 15-94 (95)
79 2kj6_A Tubulin folding cofacto 99.3 1.1E-11 3.7E-16 87.7 9.5 72 47-134 14-94 (97)
80 1wf9_A NPL4 family protein; be 99.3 4E-12 1.4E-16 90.6 6.8 73 46-135 6-94 (107)
81 2dzm_A FAS-associated factor 1 99.3 5.9E-12 2E-16 89.8 7.2 70 48-135 9-81 (100)
82 1v6e_A Cytoskeleton-associated 99.3 1.1E-11 3.8E-16 86.2 7.8 71 48-134 8-86 (95)
83 1oqy_A HHR23A, UV excision rep 99.3 5.7E-12 1.9E-16 107.6 6.8 80 46-139 6-87 (368)
84 4b6w_A Tubulin-specific chaper 99.3 1.7E-11 5.9E-16 84.7 7.5 71 48-135 3-83 (86)
85 2io0_B Small ubiquitin-related 99.2 2.3E-11 7.7E-16 85.2 7.8 78 45-139 3-81 (91)
86 1t0y_A Tubulin folding cofacto 99.2 3.4E-11 1.2E-15 87.7 8.8 72 47-134 6-85 (122)
87 2d07_B Ubiquitin-like protein 99.2 4.7E-11 1.6E-15 83.5 8.3 79 43-138 13-92 (93)
88 2xzm_9 RPS31E; ribosome, trans 99.2 1.2E-12 4.3E-17 103.0 0.0 69 48-138 1-70 (189)
89 1wz0_A Ubiquitin-like protein 99.2 9.3E-11 3.2E-15 84.0 7.5 81 44-141 21-102 (104)
90 2kzr_A Ubiquitin thioesterase 99.1 2.1E-11 7.3E-16 83.2 3.6 71 48-135 1-77 (86)
91 2k8h_A Small ubiquitin protein 99.1 1.6E-10 5.6E-15 83.6 7.8 78 44-138 23-101 (110)
92 3shq_A UBLCP1; phosphatase, hy 99.1 1.1E-10 3.7E-15 97.7 7.5 73 45-134 3-78 (320)
93 2eke_C Ubiquitin-like protein 99.1 2.6E-10 9E-15 82.1 7.9 78 43-138 27-105 (106)
94 1wm3_A Ubiquitin-like protein 99.1 3.3E-10 1.1E-14 75.3 7.5 69 48-133 2-71 (72)
95 3a4r_A Nfatc2-interacting prot 99.1 1.3E-09 4.4E-14 73.9 9.3 72 45-133 5-78 (79)
96 1wjn_A Tubulin-folding protein 98.8 3.8E-09 1.3E-13 73.4 5.7 72 47-134 9-91 (97)
97 3pge_A SUMO-modified prolifera 98.7 4E-08 1.4E-12 77.8 9.2 80 43-139 25-104 (200)
98 3kyd_D Small ubiquitin-related 98.6 1.8E-07 6.3E-12 68.3 8.2 75 45-136 38-113 (115)
99 3tix_A Ubiquitin-like protein 98.6 1.4E-07 4.8E-12 74.9 7.2 80 43-139 53-132 (207)
100 3v7o_A Minor nucleoprotein VP3 98.2 1.4E-07 4.9E-12 75.8 0.0 80 43-139 17-96 (227)
101 3goe_A DNA repair protein RAD6 98.1 2.3E-05 8E-10 54.0 8.9 74 44-134 6-81 (82)
102 2bps_A YUKD protein; ubiquitin 98.1 6.2E-06 2.1E-10 56.8 5.8 77 44-132 1-80 (81)
103 2pjh_A Protein NPL4, nuclear p 98.0 2.2E-06 7.5E-11 58.2 2.9 75 46-134 3-79 (80)
104 2jxx_A Nfatc2-interacting prot 97.7 0.00021 7.3E-09 50.4 8.7 75 41-132 19-95 (97)
105 3ix6_A TS, tsase, thymidylate 97.7 6.1E-06 2.1E-10 70.4 0.0 80 43-139 17-96 (360)
106 2al3_A TUG long isoform; TUG U 97.6 0.00012 4.1E-09 51.3 5.9 78 42-136 4-82 (90)
107 3uf8_A Ubiquitin-like protein 97.6 0.0002 6.7E-09 56.1 7.6 80 43-139 17-96 (209)
108 2l76_A Nfatc2-interacting prot 97.3 0.0023 7.8E-08 45.2 9.4 76 42-134 16-91 (95)
109 4da1_A Protein phosphatase 1K, 97.1 6.7E-05 2.3E-09 63.1 0.0 80 43-139 26-105 (389)
110 3ivf_A Talin-1; FERM domain, c 96.3 0.018 6.1E-07 47.7 8.7 77 47-136 3-85 (371)
111 4efo_A Serine/threonine-protei 96.2 0.013 4.4E-07 41.1 6.5 51 49-115 14-66 (94)
112 4e71_A Plexin-B2, MM1; transme 96.1 0.055 1.9E-06 39.0 9.2 80 46-136 10-111 (111)
113 2kc2_A Talin-1, F1; FERM, adhe 95.7 0.024 8.1E-07 41.8 6.1 35 49-84 13-48 (128)
114 3qx1_A FAS-associated factor 1 95.6 0.063 2.2E-06 35.7 7.5 72 46-134 6-82 (84)
115 2cr5_A Reproduction 8; UBX dom 95.0 0.14 4.8E-06 35.9 8.0 84 25-134 10-97 (109)
116 2r2o_A Plexin-B1; effector dom 94.9 0.16 5.5E-06 37.9 8.5 85 46-136 23-129 (138)
117 4e74_A Plexin-A4; RBD, structu 94.6 0.22 7.7E-06 36.1 8.4 89 46-136 12-115 (117)
118 4a3p_A Ubiquitin carboxyl-term 94.3 0.12 4.1E-06 40.3 6.9 76 48-136 128-209 (217)
119 3jyu_A Ubiquitin carboxyl-term 94.2 0.1 3.5E-06 41.1 6.2 65 59-136 154-221 (231)
120 3h6n_A Plexin-D1; structural g 93.7 0.68 2.3E-05 34.0 9.5 80 47-136 4-105 (127)
121 2dzk_A UBX domain-containing p 93.4 0.34 1.2E-05 34.0 7.3 73 47-135 13-90 (109)
122 1vjk_A Molybdopterin convertin 92.9 0.8 2.7E-05 31.0 8.4 79 44-137 6-96 (98)
123 1h4r_A Merlin; FERM, neurofibr 92.7 0.49 1.7E-05 37.9 8.2 90 27-136 6-99 (314)
124 1wj4_A KIAA0794 protein; UBX d 92.7 0.38 1.3E-05 34.6 6.8 72 46-134 42-118 (124)
125 2ns5_A Partitioning-defective 92.4 1 3.4E-05 30.9 8.3 77 46-131 1-78 (85)
126 3kuz_A Plexin-C1; structural g 92.2 1.3 4.5E-05 32.5 9.1 88 46-135 18-126 (126)
127 1s3s_G P47 protein; AAA ATPase 91.9 0.46 1.6E-05 34.2 6.4 77 39-130 43-123 (127)
128 1ryj_A Unknown; beta/alpha pro 91.3 0.86 2.9E-05 29.2 6.6 65 47-137 4-68 (70)
129 1vd2_A Protein kinase C, IOTA 89.7 0.9 3.1E-05 31.2 5.9 64 45-112 4-67 (89)
130 2daj_A KIAA0977 protein, COBL- 88.3 2.2 7.4E-05 29.6 7.0 74 46-139 9-86 (91)
131 1wgk_A Riken cDNA 2900073H19 p 87.9 1.6 5.3E-05 31.0 6.4 79 47-138 11-107 (114)
132 1ef1_A Moesin; membrane, FERM 87.8 2.5 8.4E-05 33.3 8.2 73 47-135 1-78 (294)
133 3ig3_A Plxna3 protein; plexin 84.9 3.6 0.00012 37.3 8.4 85 46-136 232-335 (627)
134 3qij_A Protein 4.1; cytoskelet 84.8 2.5 8.7E-05 33.8 6.8 77 44-135 14-95 (296)
135 3hm6_X Plexin-B1; structural g 84.7 3.8 0.00013 37.2 8.5 86 46-136 256-362 (644)
136 2i1j_A Moesin; FERM, coiled-co 84.5 2.6 8.9E-05 37.3 7.3 76 45-136 2-82 (575)
137 2l32_A Small archaeal modifier 84.4 0.57 2E-05 30.7 2.4 64 48-138 1-65 (74)
138 3po0_A Small archaeal modifier 84.4 3.1 0.00011 27.2 6.1 66 57-138 18-88 (89)
139 2l52_A Methanosarcina acetivor 83.5 5.8 0.0002 26.8 7.3 84 46-138 2-98 (99)
140 3dwg_C 9.5 kDa culture filtrat 81.1 9.3 0.00032 25.1 8.0 69 59-138 19-92 (93)
141 2d9p_A Polyadenylate-binding p 80.0 4.7 0.00016 26.2 5.7 54 23-80 19-75 (103)
142 3ivf_A Talin-1; FERM domain, c 79.9 6.7 0.00023 32.0 7.8 90 30-135 65-167 (371)
143 2g1e_A Hypothetical protein TA 78.7 8.1 0.00028 24.9 6.5 67 60-138 18-89 (90)
144 1y8x_B Ubiquitin-activating en 78.0 0.89 3.1E-05 31.7 1.6 71 57-134 5-83 (98)
145 1tyg_B YJBS; alpha beta barrel 76.9 4.6 0.00016 27.3 4.9 66 47-138 20-86 (87)
146 3rpf_C Molybdopterin convertin 76.8 2.9 9.9E-05 26.7 3.8 59 60-138 15-73 (74)
147 3bs9_A Nucleolysin TIA-1 isofo 76.2 11 0.00036 23.5 6.4 54 23-80 10-68 (87)
148 3au4_A Myosin-X; protein-prote 75.5 13 0.00045 32.0 8.7 50 30-83 202-252 (555)
149 3onh_A Ubiquitin-activating en 74.0 6.4 0.00022 28.8 5.3 59 66-134 18-78 (127)
150 2dgv_A HnRNP M, heterogeneous 73.9 13 0.00045 23.3 6.5 56 23-80 12-68 (92)
151 2q5w_D Molybdopterin convertin 73.1 5.2 0.00018 25.2 4.2 60 57-137 16-75 (77)
152 2qjl_A URM1, ubiquitin-related 71.9 14 0.00048 24.7 6.4 24 57-81 20-45 (99)
153 4f25_A Polyadenylate-binding p 71.7 14 0.00047 24.8 6.4 54 23-80 9-65 (115)
154 2dgo_A Cytotoxic granule-assoc 71.3 14 0.00049 24.3 6.4 53 23-79 19-76 (115)
155 2kmm_A Guanosine-3',5'-BIS(dip 71.1 11 0.00039 23.2 5.5 62 48-135 1-63 (73)
156 2cpz_A CUG triplet repeat RNA- 70.7 15 0.00052 24.2 6.4 54 23-80 29-87 (115)
157 4fxv_A ELAV-like protein 1; RN 70.4 15 0.00051 24.1 6.3 54 23-80 23-81 (99)
158 1p9y_A Trigger factor, TF; alp 70.3 11 0.00037 26.4 5.8 33 45-82 1-36 (121)
159 2k5p_A THis protein, thiamine- 69.5 3.1 0.00011 27.3 2.6 64 53-137 4-67 (78)
160 2dhg_A TRNA selenocysteine ass 68.8 18 0.00062 23.2 6.3 54 23-79 13-70 (104)
161 1q1o_A Cell division control p 68.0 18 0.00062 25.2 6.4 38 46-84 4-49 (98)
162 1f0z_A THis protein; ubiquitin 67.9 5.5 0.00019 24.8 3.4 62 53-138 4-65 (66)
163 2cpf_A RNA binding motif prote 67.7 17 0.00059 23.1 6.0 53 23-79 9-69 (98)
164 3ulh_A THO complex subunit 4; 67.4 14 0.00049 23.9 5.6 53 24-80 34-90 (107)
165 2do4_A Squamous cell carcinoma 67.2 14 0.00049 23.6 5.6 54 23-80 21-78 (100)
166 2do0_A HnRNP M, heterogeneous 66.7 15 0.0005 24.1 5.6 54 23-80 19-76 (114)
167 1t3q_A Quinoline 2-oxidoreduct 66.1 8.8 0.0003 28.5 4.8 31 44-75 6-36 (168)
168 1ip9_A BEM1 protein; ubiquitin 66.1 11 0.00039 25.7 4.9 35 46-81 11-45 (85)
169 2kmc_A Fermitin family homolog 66.1 31 0.0011 24.3 7.2 74 48-135 20-99 (102)
170 4a6q_A Histone deacetylase com 64.9 13 0.00046 27.6 5.5 73 59-134 56-137 (143)
171 2dnh_A Bruno-like 5, RNA bindi 64.5 19 0.00063 23.2 5.7 53 23-79 19-75 (105)
172 2cq0_A Eukaryotic translation 63.3 18 0.00061 23.3 5.5 53 23-79 19-76 (103)
173 3pvl_A Myosin VIIA isoform 1; 62.6 15 0.00052 32.9 6.5 50 30-83 249-299 (655)
174 2e5g_A U6 snRNA-specific termi 61.6 22 0.00076 22.5 5.6 51 23-78 12-63 (94)
175 1p1t_A Cleavage stimulation fa 61.2 29 0.00099 22.1 6.4 53 23-79 12-69 (104)
176 4eut_A Serine/threonine-protei 61.2 61 0.0021 25.8 9.5 87 5-112 273-361 (396)
177 2fc8_A NCL protein; structure 60.7 21 0.00071 22.9 5.4 53 23-80 19-74 (102)
178 1oey_A P67-PHOX, neutrophil cy 58.4 21 0.00071 24.0 5.1 36 47-84 5-40 (83)
179 1whx_A Hypothetical protein ri 57.7 30 0.001 23.0 5.9 52 23-80 14-66 (111)
180 3u52_E Phenol hydroxylase comp 56.1 31 0.0011 24.9 6.0 82 43-133 19-107 (119)
181 3p5t_L Cleavage and polyadenyl 55.7 35 0.0012 21.4 6.3 56 23-80 5-65 (90)
182 2cq3_A RNA-binding protein 9; 55.0 21 0.0007 23.0 4.6 53 23-79 19-74 (103)
183 3md1_A Nuclear and cytoplasmic 54.6 33 0.0011 20.8 6.3 54 23-80 5-63 (83)
184 1x4e_A RNA binding motif, sing 54.3 14 0.00048 22.9 3.6 53 23-79 9-66 (85)
185 2bb6_A TCII, TC II, transcobal 53.9 16 0.00055 31.4 4.8 73 56-134 329-411 (414)
186 1h2v_Z 20 kDa nuclear CAP bind 53.4 42 0.0014 23.3 6.4 52 24-79 44-100 (156)
187 2la6_A RNA-binding protein FUS 53.1 41 0.0014 21.4 6.1 53 24-80 18-83 (99)
188 3ucg_A Polyadenylate-binding p 52.7 23 0.00079 21.9 4.4 51 23-77 10-65 (89)
189 2div_A TRNA selenocysteine ass 52.2 42 0.0014 21.2 6.5 55 23-79 13-71 (99)
190 2cqd_A RNA-binding region cont 52.2 16 0.00055 24.1 3.8 53 23-79 21-78 (116)
191 2dnz_A Probable RNA-binding pr 51.1 25 0.00084 22.1 4.4 54 23-80 9-67 (95)
192 2zjd_A Microtubule-associated 50.0 62 0.0021 23.3 6.9 76 31-121 16-102 (130)
193 1fxl_A Paraneoplastic encephal 49.7 53 0.0018 22.0 6.3 54 23-80 6-64 (167)
194 2zpm_A Regulator of sigma E pr 49.4 36 0.0012 21.4 5.0 32 32-63 38-69 (91)
195 1whw_A Hypothetical protein ri 48.8 24 0.00083 22.4 4.1 53 23-79 12-69 (99)
196 2fy1_A RNA-binding motif prote 48.3 28 0.00096 23.3 4.6 53 23-79 11-67 (116)
197 1fm0_D Molybdopterin convertin 48.2 38 0.0013 21.1 5.0 57 66-138 24-80 (81)
198 2nnz_A Hypothetical protein; b 47.9 9.7 0.00033 28.3 2.2 33 44-77 26-61 (153)
199 2x1f_A MRNA 3'-END-processing 47.7 28 0.00094 22.1 4.3 54 23-80 6-64 (96)
200 2pmv_A Gastric intrinsic facto 47.4 22 0.00074 30.4 4.6 70 57-134 313-396 (399)
201 1x4a_A Splicing factor, argini 47.3 55 0.0019 21.1 6.7 53 24-80 27-81 (109)
202 2hvz_A Splicing factor, argini 47.1 47 0.0016 21.1 5.4 54 23-80 4-57 (101)
203 2jrh_A Mitogen-activated prote 47.0 44 0.0015 23.1 5.3 47 27-79 20-66 (94)
204 3mdf_A Peptidyl-prolyl CIS-tra 46.9 36 0.0012 20.7 4.6 54 23-80 11-69 (85)
205 3ex7_B RNA-binding protein 8A; 46.8 20 0.00069 23.9 3.6 54 23-80 26-84 (126)
206 3lqv_A PRE-mRNA branch site pr 46.7 23 0.00077 23.3 3.8 54 23-80 12-67 (115)
207 3nmr_A Cugbp ELAV-like family 46.3 49 0.0017 22.5 5.7 53 24-80 100-156 (175)
208 1x4h_A RNA-binding protein 28; 46.1 26 0.00088 22.7 4.0 54 23-80 19-77 (111)
209 1l3k_A Heterogeneous nuclear r 45.9 56 0.0019 22.8 6.1 55 23-79 108-165 (196)
210 1x5s_A Cold-inducible RNA-bind 45.6 33 0.0011 21.9 4.4 54 23-80 16-74 (102)
211 1l3k_A Heterogeneous nuclear r 45.4 61 0.0021 22.6 6.2 53 23-79 17-74 (196)
212 2kxn_B Transformer-2 protein h 45.0 33 0.0011 23.5 4.6 54 23-80 50-108 (129)
213 2kl0_A Putative thiamin biosyn 45.0 18 0.00061 23.2 2.9 60 53-137 4-63 (73)
214 3r27_A HnRNP L, heterogeneous 44.9 56 0.0019 22.1 5.7 51 24-80 26-77 (100)
215 1fxl_A Paraneoplastic encephal 44.7 62 0.0021 21.7 6.0 56 23-80 92-150 (167)
216 2cph_A RNA binding motif prote 44.3 29 0.00099 22.3 4.0 53 23-79 19-77 (107)
217 1wgr_A Growth factor receptor- 44.2 28 0.00097 24.1 4.0 81 46-136 8-93 (100)
218 2mss_A Protein (musashi1); RNA 44.1 19 0.00066 21.6 2.9 52 23-78 3-59 (75)
219 2ywk_A Putative RNA-binding pr 44.1 54 0.0019 20.4 5.3 54 23-80 20-77 (95)
220 1mli_A Muconolactone isomerase 43.8 30 0.001 23.9 4.1 36 59-101 7-45 (96)
221 2cqc_A Arginine/serine-rich sp 43.8 56 0.0019 20.2 5.6 54 23-80 19-77 (95)
222 2jvf_A De novo protein M7; tet 43.7 24 0.00081 23.8 3.4 31 48-80 8-38 (96)
223 2oba_A Probable 6-pyruvoyl tet 42.9 37 0.0013 24.4 4.7 37 3-40 71-109 (138)
224 3md3_A Nuclear and cytoplasmic 42.4 30 0.001 23.3 4.0 53 24-80 5-61 (166)
225 2g4b_A Splicing factor U2AF 65 42.3 52 0.0018 22.4 5.3 52 24-79 99-155 (172)
226 1x4c_A Splicing factor, argini 42.1 68 0.0023 20.8 7.1 51 23-79 19-69 (108)
227 1rk8_A CG8781-PA, CG8781-PA pr 41.8 78 0.0027 22.2 6.3 54 23-80 76-134 (165)
228 1v8c_A MOAD related protein; r 41.6 95 0.0032 22.9 6.9 67 60-138 17-86 (168)
229 2jwn_A Embryonic polyadenylate 41.5 46 0.0016 22.0 4.8 51 23-77 40-95 (124)
230 2err_A Ataxin-2-binding protei 41.4 23 0.00079 23.3 3.2 52 24-79 34-88 (109)
231 2jrs_A RNA-binding protein 39; 41.1 74 0.0025 20.8 6.3 54 23-80 30-88 (108)
232 3beg_B Splicing factor, argini 41.0 50 0.0017 21.9 4.9 52 23-80 20-71 (115)
233 2c60_A Human mitogen-activated 39.4 54 0.0019 23.2 4.9 47 27-79 47-93 (111)
234 2lxi_A RNA-binding protein 10; 39.3 11 0.00039 24.2 1.3 53 23-79 5-63 (91)
235 4a8x_A RNA-binding protein wit 39.3 64 0.0022 19.6 5.7 53 23-79 8-66 (88)
236 2dnm_A SRP46 splicing factor; 38.4 16 0.00055 23.5 2.0 53 23-79 17-74 (103)
237 2kl1_A YLBL protein; structure 38.2 65 0.0022 20.7 5.0 32 32-63 38-70 (94)
238 3u7z_A Putative metal binding 38.2 54 0.0018 22.6 4.7 85 43-135 4-98 (101)
239 2lol_A ACP, acyl carrier prote 38.0 53 0.0018 20.1 4.4 72 1-80 1-79 (81)
240 3s8s_A Histone-lysine N-methyl 37.7 72 0.0025 21.1 5.3 54 23-80 10-68 (110)
241 2npt_B Mitogen-activated prote 37.6 64 0.0022 22.5 5.0 47 27-79 36-82 (100)
242 1x4g_A Nucleolysin TIAR; struc 37.5 82 0.0028 20.3 6.7 53 23-80 29-81 (109)
243 1b66_A 6-pyruvoyl tetrahydropt 37.4 68 0.0023 22.9 5.4 55 3-57 67-133 (140)
244 1u6f_A Tcubp1, RNA-binding pro 37.3 88 0.003 21.0 5.8 52 24-79 47-103 (139)
245 1n62_A Carbon monoxide dehydro 37.2 44 0.0015 24.8 4.5 27 47-74 3-29 (166)
246 2dh8_A DAZ-associated protein 37.2 80 0.0027 20.1 5.8 53 23-79 20-77 (105)
247 1x5u_A Splicing factor 3B subu 37.0 40 0.0014 21.6 3.8 53 23-79 19-76 (105)
248 1wex_A Hypothetical protein (r 37.0 90 0.0031 20.6 6.0 51 24-80 20-71 (104)
249 1x5t_A Splicing factor 3B subu 36.8 27 0.00092 22.0 2.8 53 23-79 9-67 (96)
250 4f02_A Polyadenylate-binding p 36.8 1E+02 0.0034 22.4 6.4 54 23-80 107-163 (213)
251 2dnp_A RNA-binding protein 14; 36.0 77 0.0026 19.6 5.7 51 23-80 13-63 (90)
252 2cqi_A Nucleolysin TIAR; RNA r 36.0 51 0.0017 21.0 4.2 54 23-80 19-75 (103)
253 2qfj_A FBP-interacting repress 35.7 1.1E+02 0.0037 21.6 6.3 56 23-80 129-187 (216)
254 1uaw_A Mouse-musashi-1; RNP-ty 35.6 30 0.001 20.7 2.8 53 23-79 4-61 (77)
255 1ffv_A CUTS, iron-sulfur prote 35.5 50 0.0017 24.5 4.5 26 48-74 4-29 (163)
256 2la4_A Nuclear and cytoplasmic 35.4 84 0.0029 19.8 5.4 52 23-79 31-82 (101)
257 2dgw_A Probable RNA-binding pr 35.2 79 0.0027 19.5 5.3 51 23-78 14-68 (91)
258 2ek1_A RNA-binding protein 12; 35.1 64 0.0022 20.0 4.5 53 23-79 19-76 (95)
259 2cqb_A Peptidyl-prolyl CIS-tra 35.1 45 0.0015 21.1 3.8 54 23-80 16-74 (102)
260 1hyw_A GPW, head-TO-tail joini 35.0 70 0.0024 20.6 4.6 36 40-80 15-50 (68)
261 2lkz_A RNA-binding protein 5; 34.9 21 0.00071 23.5 2.1 54 23-80 13-73 (95)
262 1wez_A HnRNP H', FTP-3, hetero 34.8 40 0.0014 22.1 3.5 51 23-78 19-73 (102)
263 1s79_A Lupus LA protein; RRM, 34.5 53 0.0018 21.6 4.2 52 23-78 15-70 (103)
264 3idw_A Actin cytoskeleton-regu 34.3 0.69 2.4E-05 30.9 -5.3 25 115-139 40-64 (72)
265 2khc_A Testis-specific RNP-typ 33.9 31 0.0011 22.7 2.9 53 23-79 44-101 (118)
266 2ad9_A Polypyrimidine tract-bi 33.8 97 0.0033 21.4 5.6 50 24-79 36-86 (119)
267 3hrd_D Nicotinate dehydrogenas 33.8 54 0.0018 24.3 4.4 27 47-74 3-29 (160)
268 2jvr_A Nucleolar protein 3; RN 33.7 58 0.002 22.0 4.3 52 24-79 33-86 (111)
269 2i1s_A Hypothetical protein; m 33.6 1.4E+02 0.0049 22.0 8.0 35 47-82 8-46 (188)
270 2dgx_A KIAA0430 protein; RRM d 33.3 92 0.0031 19.6 5.4 54 23-80 13-72 (96)
271 2cpj_A Non-POU domain-containi 33.1 92 0.0031 19.6 5.4 53 23-80 19-71 (99)
272 2lez_A Secreted effector prote 32.9 32 0.0011 25.6 3.0 61 2-63 36-103 (145)
273 2ku7_A MLL1 PHD3-CYP33 RRM chi 32.8 47 0.0016 22.2 3.7 52 24-79 68-124 (140)
274 2r2q_A Gamma-aminobutyric acid 32.8 86 0.0029 21.6 5.1 46 39-85 19-71 (110)
275 2cu1_A Mitogen-activated prote 32.5 48 0.0016 23.3 3.7 48 27-80 24-71 (103)
276 2v1y_A Phosphatidylinositol-4, 32.4 76 0.0026 22.2 4.8 36 45-81 17-53 (108)
277 3n9u_C Cleavage and polyadenyl 32.4 1.3E+02 0.0044 21.3 6.2 53 23-79 59-118 (156)
278 2cqp_A RNA-binding protein 12; 32.1 72 0.0025 20.0 4.4 53 23-79 19-76 (98)
279 2dgp_A Bruno-like 4, RNA bindi 31.9 40 0.0014 21.6 3.1 54 23-80 17-75 (106)
280 2cpx_A Hypothetical protein FL 31.8 70 0.0024 20.7 4.4 52 23-79 29-86 (115)
281 2i6v_A General secretion pathw 31.7 97 0.0033 19.4 5.1 32 32-63 53-85 (87)
282 2krb_A Eukaryotic translation 31.6 41 0.0014 20.6 3.0 52 24-79 6-66 (81)
283 1rm6_C 4-hydroxybenzoyl-COA re 31.5 51 0.0018 24.2 4.0 27 49-76 4-30 (161)
284 2l97_A HTRA, putative serine p 31.1 87 0.003 21.5 5.0 32 32-63 90-122 (134)
285 2cqg_A TDP-43, TAR DNA-binding 30.9 1E+02 0.0035 19.5 6.2 53 23-79 19-76 (103)
286 4f02_A Polyadenylate-binding p 30.9 1.3E+02 0.0044 21.8 6.2 54 23-80 19-77 (213)
287 2e5j_A Methenyltetrahydrofolat 30.7 1E+02 0.0035 19.4 5.7 52 23-79 23-75 (97)
288 2ylm_A Ubiquitin carboxyl-term 30.4 33 0.0011 29.8 3.2 61 61-137 151-219 (530)
289 3s93_A Tudor domain-containing 30.4 32 0.0011 23.7 2.5 41 1-46 2-42 (102)
290 2kn4_A Immunoglobulin G-bindin 30.2 51 0.0017 22.7 3.6 52 24-79 75-131 (158)
291 1x5o_A RNA binding motif, sing 30.2 1.1E+02 0.0038 19.7 5.2 53 23-79 29-85 (114)
292 1b7f_A Protein (SXL-lethal pro 29.8 1.3E+02 0.0043 20.2 6.2 55 24-80 94-151 (168)
293 2dgs_A DAZ-associated protein 29.8 76 0.0026 20.0 4.2 52 23-78 14-70 (99)
294 1qau_A Neuronal nitric oxide s 29.7 74 0.0025 20.7 4.2 43 21-63 49-94 (112)
295 1t11_A Trigger factor, TF; hel 29.7 99 0.0034 25.6 5.9 33 45-82 1-36 (392)
296 2cpe_A RNA-binding protein EWS 29.5 42 0.0014 21.8 2.9 54 23-80 19-85 (113)
297 2rs2_A Musashi-1, RNA-binding 29.5 52 0.0018 21.6 3.4 53 23-79 29-86 (109)
298 3pgw_S U1-70K; protein-RNA com 29.4 91 0.0031 26.2 5.6 53 23-79 106-163 (437)
299 3q2s_C Cleavage and polyadenyl 29.3 72 0.0025 24.1 4.6 53 23-79 72-131 (229)
300 2cu3_A Unknown function protei 29.2 63 0.0022 19.6 3.5 61 53-138 3-63 (64)
301 1x4d_A Matrin 3; structural ge 28.9 1.1E+02 0.0038 20.3 5.1 51 24-80 20-72 (102)
302 2i4s_A General secretion pathw 28.8 76 0.0026 20.7 4.2 32 32-63 71-103 (105)
303 1vq8_S 50S ribosomal protein L 28.8 77 0.0026 21.2 4.1 26 56-82 22-47 (85)
304 3h9d_A ATG8, microtubule-assoc 28.6 94 0.0032 21.9 4.8 54 32-86 13-76 (119)
305 2zjr_Q 50S ribosomal protein L 28.6 61 0.0021 22.1 3.7 23 59-82 25-47 (95)
306 1why_A Hypothetical protein ri 28.5 1.1E+02 0.0038 19.1 6.6 52 23-80 21-73 (97)
307 3cyy_A Tight junction protein 28.4 60 0.0021 20.2 3.5 33 30-63 58-90 (92)
308 3d7j_A Uncharacterized protein 28.3 57 0.0019 23.7 3.7 37 3-40 71-111 (152)
309 3i18_A LMO2051 protein; alpha- 28.3 1.1E+02 0.0039 19.7 4.9 32 32-63 40-72 (100)
310 2yh0_A Splicing factor U2AF 65 27.9 1E+02 0.0034 21.4 5.0 52 24-79 119-175 (198)
311 2f3j_A RNA and export factor b 27.9 50 0.0017 24.0 3.4 53 23-79 92-148 (177)
312 2voo_A Lupus LA protein; RNA-b 27.9 1.2E+02 0.0042 22.1 5.6 52 24-79 114-169 (193)
313 3nmr_A Cugbp ELAV-like family 27.8 1.4E+02 0.0048 20.1 6.2 54 23-80 7-67 (175)
314 2kvr_A Ubiquitin carboxyl-term 27.7 42 0.0014 23.9 2.8 29 59-88 58-86 (130)
315 3s7r_A Heterogeneous nuclear r 27.5 1.1E+02 0.0037 18.6 5.6 53 23-79 15-72 (87)
316 2e44_A Insulin-like growth fac 27.4 96 0.0033 19.2 4.4 54 23-80 19-74 (96)
317 1wi8_A EIF-4B, eukaryotic tran 27.4 1.2E+02 0.0041 19.2 5.4 50 23-77 19-74 (104)
318 1oo0_B CG8781-PA, drosophila Y 27.4 69 0.0024 20.6 3.7 54 23-80 30-88 (110)
319 3e19_A FEOA; transcriptional r 27.3 35 0.0012 21.4 2.1 20 116-135 28-47 (77)
320 2kt5_A RNA and export factor-b 27.0 80 0.0027 20.8 4.1 54 23-80 39-96 (124)
321 2h3j_A Hypothetical protein PA 26.9 37 0.0013 20.9 2.2 20 116-135 24-43 (75)
322 3coq_A Regulatory protein GAL4 26.7 28 0.00094 22.2 1.5 38 4-41 50-87 (89)
323 2kjp_A Uncharacterized protein 26.6 40 0.0014 21.9 2.4 32 32-63 34-66 (91)
324 1x4b_A Heterogeneous nuclear r 26.5 77 0.0026 20.6 3.9 53 23-79 31-88 (116)
325 3sde_A Paraspeckle component 1 26.2 1.6E+02 0.0055 22.0 6.1 53 24-80 101-157 (261)
326 1b8q_A Protein (neuronal nitri 25.6 97 0.0033 20.7 4.4 43 21-63 56-101 (127)
327 2wlb_A ETP1-FD, electron trans 25.6 1.1E+02 0.0038 19.9 4.5 28 45-73 1-29 (103)
328 3r8s_T 50S ribosomal protein L 25.4 80 0.0027 21.4 3.8 25 57-82 28-52 (93)
329 3pgw_A U1-A; protein-RNA compl 25.3 1.4E+02 0.0046 22.4 5.5 54 23-80 13-72 (282)
330 2i2y_A Fusion protein consists 24.8 1.7E+02 0.0057 19.9 5.7 53 24-80 78-130 (150)
331 2k5l_A FEOA; structure, NESG, 24.8 47 0.0016 21.2 2.4 20 116-135 25-44 (81)
332 3d2w_A TAR DNA-binding protein 24.7 87 0.003 19.7 3.7 39 23-63 15-54 (89)
333 3j21_T 50S ribosomal protein L 24.2 96 0.0033 20.7 3.9 26 56-82 23-48 (86)
334 3zzy_A Polypyrimidine tract-bi 23.9 1.9E+02 0.0066 20.3 8.2 51 25-80 34-86 (130)
335 1iqt_A AUF1, heterogeneous nuc 23.8 49 0.0017 19.6 2.3 53 23-79 3-60 (75)
336 3he4_B Synzip5; heterodimeric 23.7 45 0.0015 19.7 1.9 14 67-80 2-15 (46)
337 2dnq_A RNA-binding protein 4B; 23.6 86 0.003 19.3 3.5 51 23-80 12-62 (90)
338 2p3w_A Probable serine proteas 23.5 1.2E+02 0.0041 19.7 4.4 30 32-63 69-98 (112)
339 4gmv_A RAS-associated and plec 23.4 1.2E+02 0.004 24.4 5.0 35 46-81 30-65 (281)
340 4dxa_B KREV interaction trappe 23.1 50 0.0017 26.3 2.7 27 47-74 5-34 (322)
341 2dng_A Eukaryotic translation 23.1 1.5E+02 0.0051 18.7 5.1 50 23-77 19-73 (103)
342 2c7h_A RBBP6, retinoblastoma-b 22.9 1.2E+02 0.004 20.5 4.2 37 45-81 4-42 (86)
343 3m95_A Autophagy related prote 22.8 1.2E+02 0.0041 21.7 4.4 54 32-86 18-81 (125)
344 2k4y_A FEOA-like protein; GFT 22.7 55 0.0019 21.2 2.4 20 116-135 28-47 (86)
345 3mhx_A Putative ferrous iron t 22.6 51 0.0017 21.2 2.3 21 116-136 28-48 (85)
346 2dgu_A Heterogeneous nuclear r 22.6 1.5E+02 0.0052 18.7 5.7 51 23-80 15-65 (103)
347 2cjk_A Nuclear polyadenylated 22.5 66 0.0022 21.8 3.0 53 23-79 7-64 (167)
348 2ytc_A PRE-mRNA-splicing facto 22.5 1.3E+02 0.0046 18.0 6.6 51 24-79 17-67 (85)
349 3tca_A Amyloid beta A4 precurs 22.4 1.2E+02 0.0041 22.9 4.7 36 46-82 33-69 (291)
350 2l66_A SSO7C4, transcriptional 22.2 58 0.002 19.3 2.3 20 115-134 17-36 (53)
351 3chb_D Cholera toxin; toxin/re 22.2 77 0.0026 21.8 3.1 40 41-81 30-70 (104)
352 2lgx_A Fermitin family homolog 22.1 28 0.00097 24.8 0.9 75 47-135 24-102 (112)
353 1wf0_A TDP-43, TAR DNA-binding 21.7 52 0.0018 20.4 2.1 40 23-63 9-48 (88)
354 1wgy_A RAP guanine nucleotide 21.6 81 0.0028 22.0 3.2 34 48-82 10-44 (104)
355 2db1_A Heterogeneous nuclear r 21.5 1.2E+02 0.0042 20.0 4.2 51 24-78 22-79 (118)
356 2pzd_A Serine protease HTRA2; 21.1 1.8E+02 0.0061 18.9 4.9 30 32-63 69-98 (113)
357 3hk0_A Growth factor receptor- 21.1 86 0.0029 24.8 3.7 32 48-80 9-41 (256)
358 3tve_T 50S ribosomal protein L 21.1 1.1E+02 0.0036 20.7 3.7 25 57-82 22-46 (92)
359 1ujv_A Membrane associated gua 20.3 1E+02 0.0035 19.8 3.4 28 30-57 64-92 (96)
No 1
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=100.00 E-value=3.1e-35 Score=212.92 Aligned_cols=98 Identities=31% Similarity=0.596 Sum_probs=94.1
Q ss_pred cCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 44 HGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 44 ~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
.|++|+|+| +++|+.|+|+| ++++||+|||++|++++..++++++++++|||+|+|.+|||+|+|++|.+|+++|++|
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V-~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dy 82 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVV-VQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY 82 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEE-CTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH
T ss_pred CCCcEEEEEEecCCCEEEEEE-CCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHc
Confidence 478999999 99999999999 9999999999999999999999999999999999999999999999998788999999
Q ss_pred CCCCCCEEEEEeeecccccC
Q psy2972 123 GIESQCEITFVKRLKDKVRI 142 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~k~~~ 142 (143)
||++|++|||++|||||+|-
T Consensus 83 gI~~g~~l~lv~~lr~~~~~ 102 (105)
T 1v2y_A 83 GIRNRDEVSFIKKLGQKSGP 102 (105)
T ss_dssp TCCSSEEEEEEECSCSCCCC
T ss_pred CCCCCCEEEEEehhccCCCC
Confidence 99999999999999999874
No 2
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.75 E-value=7.3e-18 Score=112.68 Aligned_cols=76 Identities=18% Similarity=0.423 Sum_probs=68.0
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
..|+|+| ..+|+.+.+.| ++++||.+||+.|++. +|+++ .+++|+|+|+.| +|+.+|.+|||
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v-~~~~tV~~lK~~i~~~-------~gip~--------~~qrL~~~G~~L-~d~~tL~~~~i 65 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEV-RLTQTVAHLKQQVSGL-------EGVQD--------DLFWLTFEGKPL-EDQLPLGEYGL 65 (79)
T ss_dssp CCEEEEEECTTSCEEEEEE-CTTSBHHHHHHHHHHH-------HTCCG--------GGEEEEETTEEC-CTTSBGGGGTC
T ss_pred CCEEEEEEeCCCCEEEEEE-CCcChHHHHHHHHHhh-------cCCCH--------HHEEEEECCEEC-CCCCcHHHCCC
Confidence 4699999 77899999999 8999999999999986 34433 578999999999 57899999999
Q ss_pred CCCCEEEEEeeecc
Q psy2972 125 ESQCEITFVKRLKD 138 (143)
Q Consensus 125 ~~g~tl~fv~rlr~ 138 (143)
++|++||++.||||
T Consensus 66 ~~~~~l~l~~rl~G 79 (79)
T 3phx_B 66 KPLSTVFMNLRLRG 79 (79)
T ss_dssp CTTCEEEEEECCBC
T ss_pred CCCCEEEEEEecCC
Confidence 99999999999998
No 3
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=7.7e-17 Score=108.03 Aligned_cols=78 Identities=18% Similarity=0.334 Sum_probs=67.4
Q ss_pred CCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhC
Q psy2972 45 GQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELG 123 (143)
Q Consensus 45 g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyG 123 (143)
|..|+|+| ..+|+.+.+.| ++++||.+||++|++.+ +++ +..++|+|+|+.| +|+.+|.+||
T Consensus 1 gs~m~i~vk~~~g~~~~~~v-~~~~tV~~lK~~i~~~~-------~i~--------~~~qrL~~~g~~L-~d~~tL~~~~ 63 (85)
T 3mtn_B 1 GSHMQIFVKTLTGKTITLEV-EPSDTIENVKAKIQDKE-------GIP--------PDQQRLIFAGKQL-EDGRTLSDYN 63 (85)
T ss_dssp --CEEEEEECTTSCEEEEEE-CTTCBHHHHHHHHHHHH-------CCC--------GGGCEEEETTEEC-CTTSBTGGGT
T ss_pred CCeEEEEEEcCCCCEEEEEE-CCCCCHHHHHHHHHHHH-------CcC--------hHHEEEEECCEEC-CCCCCHHHcC
Confidence 56899999 78899999999 89999999999999975 322 2467999999999 5789999999
Q ss_pred CCCCCEEEEEeeeccc
Q psy2972 124 IESQCEITFVKRLKDK 139 (143)
Q Consensus 124 I~~g~tl~fv~rlr~k 139 (143)
|++|++||++.|+||-
T Consensus 64 i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 64 IQKWSTLFLLLRLRGG 79 (85)
T ss_dssp CCTTCEEEEECCCCCC
T ss_pred CCCCCEEEEEEECcCC
Confidence 9999999999999984
No 4
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.69 E-value=6.3e-17 Score=109.50 Aligned_cols=78 Identities=21% Similarity=0.368 Sum_probs=68.8
Q ss_pred cCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 44 HGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 44 ~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
.+.+|+|+| ..+|+.+.+.| ++++||.+||++|++.+ |++ +.+++|+|+|+.| +|+.+|.+|
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v-~~~~tV~~lK~~i~~~~-------gip--------~~~qrL~~~G~~L-~d~~tL~~~ 71 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDI-EPTDKVERIKERVEEKE-------GIP--------PQQQRLIYSGKQM-NDEKTAADY 71 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEE-CTTCBHHHHHHHHHHHH-------CCC--------GGGCCEEETTEEC-CTTSBGGGG
T ss_pred CCCcEEEEEEcCCCCEEEEEE-CCCCCHHHHHHHHHHHH-------CcC--------HHHEEEEECCeEC-CCCCcHHHc
Confidence 456799999 78999999999 89999999999999974 332 2467999999999 579999999
Q ss_pred CCCCCCEEEEEeeecc
Q psy2972 123 GIESQCEITFVKRLKD 138 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~ 138 (143)
||++|++||++.|+||
T Consensus 72 ~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 72 KILGGSVLHLVLRLRG 87 (88)
T ss_dssp TCCTTCEEEECCCCCC
T ss_pred CCCCCCEEEEEEeCCC
Confidence 9999999999999997
No 5
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.69 E-value=8.3e-17 Score=110.81 Aligned_cols=78 Identities=18% Similarity=0.355 Sum_probs=68.5
Q ss_pred ccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhh
Q psy2972 43 LHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSE 121 (143)
Q Consensus 43 ~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~d 121 (143)
+.+..|+|+| ..+|+.+.+.| .+++||.+||+.|++.+ |++. .+++|+|+|+.| +|+.+|.+
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~l~v-~~~~TV~~LK~~I~~~~-------gip~--------~~qrL~~~Gk~L-~D~~tL~~ 75 (91)
T 3v6c_B 13 VPRGSMQIFVNTLTGTHITLEV-EPSDTIENVKAKIQDKE-------GIPP--------DQQRLIFAGKQL-EDGRTLSD 75 (91)
T ss_dssp CCCCSEEEEEECTTSCEEEEEE-CTTCBHHHHHHHHHHHH-------CCCG--------GGCEEEETTEEC-CTTCBTGG
T ss_pred CCCCeEEEEEEeCCCCEEEEEE-CCCCCHHHHHHHHHhhh-------CCCh--------hhEEEEECCeEC-CCcCcHHH
Confidence 4456899999 78999999999 89999999999999964 4322 467999999999 57899999
Q ss_pred hCCCCCCEEEEEeeec
Q psy2972 122 LGIESQCEITFVKRLK 137 (143)
Q Consensus 122 yGI~~g~tl~fv~rlr 137 (143)
|||++|++||++.|||
T Consensus 76 ~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 76 YNIQKESTLHLVLRLR 91 (91)
T ss_dssp GTCCTTCEEEEECCCC
T ss_pred CCCCCCCEEEEEEecC
Confidence 9999999999999997
No 6
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=4.1e-17 Score=109.56 Aligned_cols=78 Identities=15% Similarity=0.311 Sum_probs=65.5
Q ss_pred CCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhC
Q psy2972 45 GQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELG 123 (143)
Q Consensus 45 g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyG 123 (143)
|..|+|+| ..+|+.+++.| ++++||.+||++|++.+ +++ +.+++|+|+|+.| +|+.+|.+||
T Consensus 1 gs~m~i~vk~~~g~~~~~~v-~~~~tV~~lK~~i~~~~-------~ip--------~~~qrL~~~g~~L-~d~~tL~~~~ 63 (85)
T 3n3k_B 1 GSHMRIVVKTLMGRTIILEV-EPSDTIENVKAKIQDKE-------GIP--------PDQQRLIFAGKQL-EDGRTLSDYN 63 (85)
T ss_dssp ---CEEEEECGGGCEEEEEC-CTTCBHHHHHHHHHHHH-------CCC--------GGGEEEEETBEEC-CTTCBTTTTT
T ss_pred CCeEEEEEEeCCCCEEEEEE-CCCCcHHHHHHHHHHHH-------CCC--------HHHEEEEECCeEC-CCCCCHHHCC
Confidence 56799999 78899999999 88999999999999974 332 2477999999999 5788999999
Q ss_pred CCCCCEEEEEeeeccc
Q psy2972 124 IESQCEITFVKRLKDK 139 (143)
Q Consensus 124 I~~g~tl~fv~rlr~k 139 (143)
|++|++||++.|+||=
T Consensus 64 i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 64 IHNHSALYLLLKLRGG 79 (85)
T ss_dssp CCTTCEEEEEECCC--
T ss_pred CCCCCEEEEEEeccCC
Confidence 9999999999999984
No 7
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=7e-17 Score=113.07 Aligned_cols=79 Identities=19% Similarity=0.395 Sum_probs=67.6
Q ss_pred ccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhh
Q psy2972 43 LHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSE 121 (143)
Q Consensus 43 ~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~d 121 (143)
..+..|+|+| ..+|+.+.|.| ++++||.+||+.|++.+ |++ +.+|+|+|+|+.| +|+.+|.+
T Consensus 18 ~~~~~m~I~Vk~~~g~~~~l~v-~~~~TV~~LK~~I~~~~-------gip--------~~~qrLi~~Gk~L-~D~~tL~~ 80 (98)
T 4hcn_B 18 FQGRPMQIFVKTLTGKTITLEV-ESSDTIDNVKSKIQDKE-------GIP--------PDQQRLIFAGKQL-EDGRTLSD 80 (98)
T ss_dssp ----CCEEEEEETTCCEEEEEC-CTTCBHHHHHHHHHHHH-------CCC--------GGGCEEEETTEEC-CTTCBSGG
T ss_pred CCCCeEEEEEEeCCCCEEEEEE-CCCCcHHHHHHHHHHHh-------CCC--------hhHEEEEECCEEC-CCCCcHHH
Confidence 5667899999 78999999999 88999999999999974 332 2477999999999 58899999
Q ss_pred hCCCCCCEEEEEeeecc
Q psy2972 122 LGIESQCEITFVKRLKD 138 (143)
Q Consensus 122 yGI~~g~tl~fv~rlr~ 138 (143)
|||++|++||++.|+||
T Consensus 81 ~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 81 YNIQKESTLHLVLRLRG 97 (98)
T ss_dssp GTCCTTEEEEEECBCSC
T ss_pred CCCCCCCEEEEEEecCC
Confidence 99999999999999998
No 8
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.68 E-value=8.3e-17 Score=110.68 Aligned_cols=76 Identities=17% Similarity=0.302 Sum_probs=65.8
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ..+|+.+++.| ++++||.+||+.|++.. |++ +.+|+|+|+|+.| +|+.+|.+|||++
T Consensus 1 M~I~Vk~~~g~~~~l~v-~~~~TV~~LK~~I~~~~-------gip--------~~~qrLi~~Gk~L-~D~~tL~~~~i~~ 63 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDI-EPTDKVERIKERVEEKE-------GIP--------PQQQRLIYSGKQM-NDEKTAADYKILG 63 (88)
T ss_dssp CEEEEEETTCCEEEEEC-CTTCBHHHHHHHHHHHH-------CCC--------GGGCEEEETTEEC-CTTSBTTTTTCCT
T ss_pred CEEEEEcCCCCEEEEEE-CCCCCHHHHHHHHHHHH-------CcC--------hhHEEEEECCeEC-CCCCcHHHcCCCC
Confidence 89999 78999999999 89999999999999964 432 2577999999999 5799999999999
Q ss_pred CCEEEEEeeecccc
Q psy2972 127 QCEITFVKRLKDKV 140 (143)
Q Consensus 127 g~tl~fv~rlr~k~ 140 (143)
|++|+++.|+||-.
T Consensus 64 g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 64 GSVLHLVLALRGGG 77 (88)
T ss_dssp TCEEEEECBCC---
T ss_pred CCEEEEEEECCCCC
Confidence 99999999999853
No 9
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.68 E-value=1.2e-16 Score=104.63 Aligned_cols=74 Identities=18% Similarity=0.330 Sum_probs=65.1
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ..+|+.+.+.| ++++||.+||++|++.. |++ +.+++|+|+|+.| +|+.+|++|||++
T Consensus 1 M~i~vk~~~g~~~~~~v-~~~~tv~~lK~~i~~~~-------~i~--------~~~q~L~~~g~~L-~d~~tL~~~~i~~ 63 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDI-EPTDKVERIKERVEEKE-------GIP--------PQQQRLIYSGKQM-NDEKTAADYKILG 63 (76)
T ss_dssp CEEEEECTTSCEEEEEC-CTTCBHHHHHHHHHHHH-------CCC--------GGGEEEEETTEEC-CTTSBGGGGTCCT
T ss_pred CEEEEECCCCCEEEEEE-CCCChHHHHHHHHHHHH-------CcC--------hHHEEEEECCEEC-CCCCcHHHcCCCC
Confidence 89999 67899999999 88999999999999964 432 3578999999999 5789999999999
Q ss_pred CCEEEEEeeecc
Q psy2972 127 QCEITFVKRLKD 138 (143)
Q Consensus 127 g~tl~fv~rlr~ 138 (143)
|++||++.|+||
T Consensus 64 g~~i~l~~~~~G 75 (76)
T 1ndd_A 64 GSVLHLVLALRG 75 (76)
T ss_dssp TCEEEEEECCC-
T ss_pred CCEEEEEEeCCC
Confidence 999999999987
No 10
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.68 E-value=1e-16 Score=107.03 Aligned_cols=76 Identities=18% Similarity=0.324 Sum_probs=68.0
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
..|+|+| ..+|+.+.+.| .+++||.+||++|+++ +|++ +.+++|+|+|+.| .|+.||++|||
T Consensus 2 ~~m~i~vk~~~g~~~~~~v-~~~~tv~~lk~~i~~~-------~gi~--------~~~qrL~~~G~~L-~d~~tl~~~~i 64 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKV-KMTTHLKKLKESYCQR-------QGVP--------MNSLRFLFEGQRI-ADNHTPKELGM 64 (79)
T ss_dssp CEEEEEEECTTCCEEEEEE-ETTSCTHHHHHHHHHH-------HTCC--------GGGEEEEETTEEC-CTTCCHHHHTC
T ss_pred CeEEEEEECCCCCEEEEEE-CCCChHHHHHHHHHHH-------HCCC--------cccEEEEECCEEe-CCCCCHHHcCC
Confidence 3599999 78999999999 8899999999999996 4543 3588999999999 47899999999
Q ss_pred CCCCEEEEEeeecc
Q psy2972 125 ESQCEITFVKRLKD 138 (143)
Q Consensus 125 ~~g~tl~fv~rlr~ 138 (143)
++|++||++.++||
T Consensus 65 ~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 65 EEEDVIEVYQEQTG 78 (79)
T ss_dssp CTTEEEEEEECCCC
T ss_pred CCCCEEEEEEeccC
Confidence 99999999999998
No 11
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.67 E-value=2.3e-16 Score=103.29 Aligned_cols=74 Identities=19% Similarity=0.361 Sum_probs=65.8
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ..+|+.+.+.| ++++||.+||++|++.+ |.+ +.+++|+|.|+.| +|+.+|++|||++
T Consensus 1 M~i~vk~~~g~~~~i~v-~~~~tv~~lK~~i~~~~-------~i~--------~~~q~L~~~g~~L-~d~~tL~~~~i~~ 63 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEV-EPSDTIENVKAKIQDKE-------GIP--------PDQQRLIFAGKQL-EDGRTLSDYNIQR 63 (76)
T ss_dssp CEEEEEETTSCEEEEEC-CTTCBHHHHHHHHHHHH-------CCC--------GGGEEEEETTEEC-CTTCBTGGGTCCT
T ss_pred CEEEEEcCCCCEEEEEE-CCCCcHHHHHHHHHHHH-------CcC--------HHHeEEEECCeEC-CCCCcHHHcCCCC
Confidence 89999 67899999999 88999999999999964 332 3578999999999 5789999999999
Q ss_pred CCEEEEEeeecc
Q psy2972 127 QCEITFVKRLKD 138 (143)
Q Consensus 127 g~tl~fv~rlr~ 138 (143)
|++||++.|++|
T Consensus 64 g~~i~l~~~~~G 75 (76)
T 3a9j_A 64 ESTLHLVLRLRG 75 (76)
T ss_dssp TCEEEEEECCCC
T ss_pred CCEEEEEEeCCC
Confidence 999999999987
No 12
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.66 E-value=2.9e-16 Score=110.04 Aligned_cols=78 Identities=19% Similarity=0.346 Sum_probs=69.3
Q ss_pred cCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 44 HGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 44 ~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
.+..|+|+| ..+|+.+.+.| .+++||.+||++|+++ +|++ +.+++|+|+|+.| .|+.||.+|
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v-~~~~tv~~lK~~i~~~-------~gip--------~~~qrLif~Gk~L-~d~~tl~dy 80 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKV-KMTTHLKKLKESYCQR-------QGVP--------MNSLRFLFEGQRI-ADNHTPKEL 80 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEE-ETTSCTHHHHHHHHHH-------HTCC--------GGGEEEEETTEEC-CTTCCHHHH
T ss_pred CCCcEEEEEEeCCCCEEEEEE-CCCCcHHHHHHHHHHH-------HCCC--------hhhEEEEECCeEc-CCCCCHHHC
Confidence 456799999 78999999999 8899999999999996 4543 3588999999999 588999999
Q ss_pred CCCCCCEEEEEeeecc
Q psy2972 123 GIESQCEITFVKRLKD 138 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~ 138 (143)
||++|++||++.++||
T Consensus 81 ~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 81 GMEEEDVIEVYQEQTG 96 (97)
T ss_dssp TCCTTCEEEEEESSSC
T ss_pred CCCCCCEEEEEEecCC
Confidence 9999999999999998
No 13
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=5.7e-16 Score=104.92 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=68.2
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
..|+|+| ..+|+.+.+.| ++++||.+||++|++. .|++ +.+++|+|+|+.| +|+.+|.+|||
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v-~~~~tV~~lK~~i~~~-------~gi~--------~~~qrL~~~Gk~L-~d~~tL~~~~i 68 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAI-NPNSFILGLKQQIEDQ-------QGLP--------KKQQQLEFQGQVL-QDWLGLGIYGI 68 (87)
T ss_dssp SSEEEEEEETTTEEEEEEE-CSSSBHHHHHHHHHHH-------TCCC--------TTTEEEEETTEEC-CSSSBHHHHTC
T ss_pred CCEEEEEEcCCCCEEEEEe-CCCChHHHHHHHHHHH-------hCCC--------hHHEEEEECCEEc-cCCCCHHHCCC
Confidence 4699999 77899999999 8899999999999996 3443 3588999999999 57899999999
Q ss_pred CCCCEEEEEeeeccc
Q psy2972 125 ESQCEITFVKRLKDK 139 (143)
Q Consensus 125 ~~g~tl~fv~rlr~k 139 (143)
++|++||++.|++|=
T Consensus 69 ~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 69 QDSDTLILSKKKGSG 83 (87)
T ss_dssp CTTEEEEEEECSCCC
T ss_pred CCCCEEEEEEeccCC
Confidence 999999999999984
No 14
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.65 E-value=4.3e-16 Score=107.47 Aligned_cols=78 Identities=18% Similarity=0.336 Sum_probs=66.5
Q ss_pred cEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCC
Q psy2972 47 SIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIE 125 (143)
Q Consensus 47 am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~ 125 (143)
.|+|+| ..+|+.+.|.| ++++||.+||+.|++.+ |++ +..++|+|+|+.| +|+.+|.+|||+
T Consensus 1 gm~i~vk~~~g~~~~~~v-~~~~TV~~LK~~i~~~~-------gip--------~~~qrL~~~G~~L-~d~~tL~~~~i~ 63 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEV-EPSDTIENVKAKIQDKE-------GIP--------PDQQRLIFAGKQL-EDGRTLSDYNIQ 63 (96)
T ss_dssp -CEEEEEETTCCEEEEEC-CTTCBHHHHHHHHHHHH-------CCC--------GGGEEEEETTEEC-CTTSBTGGGTCC
T ss_pred CcEEEEEeCCCCEEEEEE-CCCCCHHHHHHHHHhhh-------CCC--------hhHEEEEECCEEC-CCCCcHHHcCCC
Confidence 389999 78899999999 88999999999999974 332 2577999999999 578899999999
Q ss_pred CCCEEEEEeeeccccc
Q psy2972 126 SQCEITFVKRLKDKVR 141 (143)
Q Consensus 126 ~g~tl~fv~rlr~k~~ 141 (143)
+|++||++.|+||-.+
T Consensus 64 ~~~~i~l~~r~~gG~~ 79 (96)
T 3k9o_B 64 KESTLHLVLRLRGYAD 79 (96)
T ss_dssp TTCEEEEEECCCC---
T ss_pred CCCEEEEEEEcCCCCc
Confidence 9999999999998543
No 15
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=4.8e-16 Score=106.84 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=63.2
Q ss_pred cCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 44 HGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 44 ~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
+=+.|+|+| +.+|+.+.+.| ++++||.+||++|++.. |++ +.+++|+|+|+.| +|+.+|++|
T Consensus 6 ~~~~~~i~v~~~~G~~~~l~v-~~~~TV~~LK~~I~~~~-------gip--------~~~qrL~~~Gk~L-~D~~tL~~~ 68 (88)
T 1sif_A 6 HLQGLQLFIKTLTGKTFTVEM-EPSDTIENLKAKIQDKE-------GIP--------PDQQRLIFAGKQL-EDGRTLSDY 68 (88)
T ss_dssp ----CEEEEEETTSCEEEEEC-CTTSBHHHHHHHHHHHH-------CCC--------GGGCEEEETTEEC-CTTSBSGGG
T ss_pred cccceEEEEEeCCCCEEEEEE-CCCChHHHHHHHHHHHH-------CcC--------hhhEEEEECCEEC-CCCCcHHHc
Confidence 346799999 99999999999 89999999999999964 332 2577999999999 578999999
Q ss_pred CCCCCCEEEEEeeeccc
Q psy2972 123 GIESQCEITFVKRLKDK 139 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~k 139 (143)
||++|++|+++.|+||-
T Consensus 69 gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 69 NIQKESTLHLVLRLRGG 85 (88)
T ss_dssp TCCTTCEEEEEC-----
T ss_pred CCCCCCEEEEEEeCCCC
Confidence 99999999999999984
No 16
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.64 E-value=6.6e-16 Score=105.99 Aligned_cols=78 Identities=18% Similarity=0.416 Sum_probs=65.3
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
..|+|+| ..+|+.+.+.| ++++||.+||+.|++. .|+++ .+++|+|+|+.| +|+.+|++|||
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v-~~~~TV~~LK~~I~~~-------~gip~--------~~qrL~~~Gk~L-~D~~tL~~~~I 65 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEV-RLTQTVAHLKQQVSGL-------EGVQD--------DLFWLTFEGKPL-EDQLPLGEYGL 65 (88)
T ss_dssp CEEEEEEEETTSCEEEEEE-ESSSBHHHHHHHHHHH-------TCSCT--------TTEEEESSSSCC-CTTSBHHHHHC
T ss_pred ccEEEEEECCCCCEEEEEE-CCCCcHHHHHHHHHHH-------hCCCh--------hHEEEEECCEEC-CCCCcHHHcCC
Confidence 4699999 77899999999 8899999999999995 45433 588999999999 57899999999
Q ss_pred CCCCEEEEEeeecccc
Q psy2972 125 ESQCEITFVKRLKDKV 140 (143)
Q Consensus 125 ~~g~tl~fv~rlr~k~ 140 (143)
++|++|+++.+++|.+
T Consensus 66 ~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 66 KPLSTVFMNLRLRGGL 81 (88)
T ss_dssp STTCEEEEEEC-----
T ss_pred CCCCEEEEEEEcCCCc
Confidence 9999999999999864
No 17
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.64 E-value=1.4e-15 Score=104.45 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=66.0
Q ss_pred cCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcc-cccccchhhh
Q psy2972 44 HGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIK-LTNEKSLLSE 121 (143)
Q Consensus 44 ~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkk-L~~d~~tL~d 121 (143)
+-.-|+|+| +.+|+.+++.| ++++||.+||+.|++. +|++ +.+|+|+|+|+. | +|+.+|++
T Consensus 7 ~~~~~~i~vk~l~g~~~~l~v-~~~~TV~~LK~~I~~~-------~gip--------~~~QrLi~~Gk~lL-~D~~tL~~ 69 (84)
T 2kk8_A 7 HHSHMKFLVENLNGSSFELEV-DYRDTLLVVKQKIERS-------QHIP--------VSKQTLIVDGIVIL-REDLTVEQ 69 (84)
T ss_dssp CCCCEEEEEEETTSCEEEEEE-CTTSBHHHHHHHHHHH-------HTCC--------GGGEEEEETTEECC-CSSSBHHH
T ss_pred ccCceEEEEEecCCcEEEEEE-CCCChHHHHHHHHHHH-------HCcC--------hHHEEEEECCEEec-CCcCCHHH
Confidence 345799999 99999999999 8999999999999996 3443 258899999999 7 68899999
Q ss_pred hCCCCCCEEEEEee
Q psy2972 122 LGIESQCEITFVKR 135 (143)
Q Consensus 122 yGI~~g~tl~fv~r 135 (143)
|||++|++|+++.+
T Consensus 70 y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 70 CQIVPTSDIQLEVS 83 (84)
T ss_dssp HTCCTTSCEEEEEC
T ss_pred cCCCCCCEEEEEEc
Confidence 99999999999865
No 18
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.64 E-value=1.1e-15 Score=114.11 Aligned_cols=117 Identities=19% Similarity=0.315 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhcc-CC----c--c-c--CCCCCCCHHHHH----hHH--hhc-cCCcEEEEE-EeCCceEEEEecCCCCc
Q psy2972 8 LTETKEAIKNIRT-QN----T--L-S--HLPQDVTVEEIK----SEM--ELL-HGQSIMCCI-QADNKKFDIVISPKNTR 69 (143)
Q Consensus 8 ~~~~~~~l~~il~-d~----~--L-~--dlp~~~t~~ev~----~~i--al~-~g~am~l~V-k~~g~~~~V~V~~~~aT 69 (143)
...+++.|..... .| + . + -|..+.|+++.. +.| .+. ....|+|+| ..+|+.+++.| ++++|
T Consensus 25 V~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m~i~vk~~~g~~~~~~v-~~~~t 103 (159)
T 3rt3_B 25 VSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEV-RLTQT 103 (159)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCEEEEEECTTSCEEEEEE-CTTSB
T ss_pred HHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcEEEEEECCCCCEEEEEe-CCCCC
Confidence 4455666666555 33 1 2 2 355666776642 111 122 255699999 77899999999 99999
Q ss_pred HHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEEeeeccccc
Q psy2972 70 VSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVKRLKDKVR 141 (143)
Q Consensus 70 V~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~rlr~k~~ 141 (143)
|.+||+.|++. +|+++ .+|+|+|+|+.| +|+.+|.+|||++|++||++.|+||-+|
T Consensus 104 V~~lK~~i~~~-------~gip~--------~~q~L~~~G~~L-~d~~tL~~y~i~~g~~l~l~~rl~GG~r 159 (159)
T 3rt3_B 104 VAHLKQQVSGL-------EGVQD--------DLFWLTFEGKPL-EDQLPLGEYGLKPLSTVFMNLRLRGGGR 159 (159)
T ss_dssp HHHHHHHHHHH-------HTCCG--------GGEEEEETTEEC-CTTSBGGGGTCCTTCEEEEEECCC----
T ss_pred HHHHHHHHHHH-------HCCCH--------HHEEEEECCeec-CCCCCHHHcCCCCCCEEEEEEecCCCCC
Confidence 99999999996 45432 588999999999 5789999999999999999999999765
No 19
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.44 E-value=1.8e-17 Score=109.69 Aligned_cols=75 Identities=17% Similarity=0.337 Sum_probs=66.4
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ..+|+.+.+.| ++++||.+||+.|++.. |++ +.+++|+|+|+.| +|+.+|.+|||++
T Consensus 1 M~i~Vk~~~g~~~~~~v-~~~~tV~~lK~~i~~~~-------gi~--------~~~qrL~~~gk~L-~d~~tL~~~~i~~ 63 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEV-DSDTSILQLKEVVAKQQ-------GVP--------ADQLRVIFAGKEL-PNHLTVQNCDLEQ 63 (76)
Confidence 89999 77899999999 88999999999999964 332 2477999999999 5789999999999
Q ss_pred CCEEEEEeeeccc
Q psy2972 127 QCEITFVKRLKDK 139 (143)
Q Consensus 127 g~tl~fv~rlr~k 139 (143)
|++||++.|+||+
T Consensus 64 g~~i~l~~rlrg~ 76 (76)
T 3b1l_X 64 QSIVHIVQRPRRR 76 (76)
Confidence 9999999999984
No 20
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=1.9e-15 Score=102.85 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=67.4
Q ss_pred CcEEEEE-EeCC-ceEEE-EecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 46 QSIMCCI-QADN-KKFDI-VISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 46 ~am~l~V-k~~g-~~~~V-~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
..|+|+| ..+| +.+.+ .| ++++||.+||+.|++. .|++. .+++|+|.|+.| +|+.+|.+|
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v-~~~~tV~~lK~~i~~~-------~gip~--------~~qrL~~~gk~L-~d~~tL~~~ 68 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDV-SRKATIEELRERVWAL-------FDVRP--------ECQRLFYRGKQL-ENGYTLFDY 68 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEE-CTTCBHHHHHHHHHHH-------SCCCT--------TTEEEEETTEEC-CSSSBHHHH
T ss_pred CcEEEEEEECCCCceEEEEec-CCCCCHHHHHHHHHHH-------HCcCh--------hhEEEEECCeEC-CCCCCHHHC
Confidence 4699999 7788 69999 59 8899999999999995 44432 588999999999 588999999
Q ss_pred CCCCCCEEEEEeeeccc
Q psy2972 123 GIESQCEITFVKRLKDK 139 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~k 139 (143)
||++|++||++.|++|-
T Consensus 69 ~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 69 DVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp TCCTTCEEEEEECCCCS
T ss_pred CCCCCCEEEEEEeCCCC
Confidence 99999999999999984
No 21
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=1.9e-15 Score=100.39 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=64.0
Q ss_pred cEEEEE-EeCCceE-EEE-ecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhC
Q psy2972 47 SIMCCI-QADNKKF-DIV-ISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELG 123 (143)
Q Consensus 47 am~l~V-k~~g~~~-~V~-V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyG 123 (143)
.|+|+| ..+|+.+ .+. | ++++||.+||+.|++. .|++. .+++|+|+|+.| +|+.+|.+||
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v-~~~~tv~~lK~~i~~~-------~gip~--------~~qrL~~~g~~L-~d~~tL~~~~ 64 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSL-SRLTKVEELRRKIQEL-------FHVEP--------GLQRLFYRGKQM-EDGHTLFDYE 64 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEE-CTTCBHHHHHHHHHHH-------HCCCG--------GGEEEEETTEEC-CTTCBTTTTT
T ss_pred cEEEEEEECCCCEEEEEecc-CCCCCHHHHHHHHHHH-------HCcCh--------hhEEEEECCEEC-CCCCCHHHcC
Confidence 599999 7889885 999 9 8899999999999996 34432 578999999999 5789999999
Q ss_pred CCCCCEEEEEeee
Q psy2972 124 IESQCEITFVKRL 136 (143)
Q Consensus 124 I~~g~tl~fv~rl 136 (143)
|++|++||++.|+
T Consensus 65 i~~g~~i~l~~r~ 77 (78)
T 2faz_A 65 VRLNDTIQLLVRQ 77 (78)
T ss_dssp CCTTCEEEEEECC
T ss_pred CCCCCEEEEEEeC
Confidence 9999999999875
No 22
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.62 E-value=1.2e-15 Score=109.50 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=68.2
Q ss_pred CCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhC
Q psy2972 45 GQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELG 123 (143)
Q Consensus 45 g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyG 123 (143)
..+|+|+| ..+|+.+.|.| .+++||.+||++|++.+ |++ +.+|+|+|.|+.| .|+.+|.+||
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v-~~~~TV~~LK~~I~~~~-------gip--------~~~QrLi~~Gk~L-~D~~tL~~~g 95 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEV-EPSDTIENVKAKIQDKE-------GIP--------PDQQRLIFAGKQL-EDGRTLSDYN 95 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEE-CTTCBHHHHHHHHHHHH-------CCC--------GGGEEEEETTEEC-CTTSBTTTTT
T ss_pred CccEEEEEEeCCCCEEEEEe-CCCCCHHHHHHHHHHHh-------CCC--------hHHEEEEECCEEC-CCCCcHHHCC
Confidence 34799999 78999999999 88999999999999964 432 2578999999999 5789999999
Q ss_pred CCCCCEEEEEeeecc
Q psy2972 124 IESQCEITFVKRLKD 138 (143)
Q Consensus 124 I~~g~tl~fv~rlr~ 138 (143)
|++|++||++.|+||
T Consensus 96 I~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 96 IQKESTLHLVLRLRG 110 (111)
T ss_dssp CCTTCEEEEEECCCC
T ss_pred CCCCCEEEEEEecCC
Confidence 999999999999997
No 23
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=100.83 Aligned_cols=75 Identities=17% Similarity=0.345 Sum_probs=65.7
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
..|+|+| ..+|+.+.+.| ++++||.+||++|++.. |++ +..++|+|+|+.| +|+.+|.+|||
T Consensus 6 ~~m~i~vk~~~g~~~~~~v-~~~~tV~~LK~~i~~~~-------~i~--------~~~qrL~~~gk~L-~d~~tL~~~~i 68 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQV-PEDELVSTLKQLVSEKL-------NVP--------VRQQRLLFKGKAL-ADGKRLSDYSI 68 (81)
T ss_dssp SSEEEEEEETTSCEEEEEE-CSSCBHHHHHHHHHHHT-------CCC--------TTTCEEEETTEEC-CTTSBGGGGTC
T ss_pred CcEEEEEEeCCCCEEEEEE-CCCCcHHHHHHHHHHHH-------CcC--------HHHEEEEECCeEC-CCCCcHHHcCC
Confidence 4699999 78899999999 88999999999999963 432 3578999999999 57899999999
Q ss_pred CCCCEEEEEeeec
Q psy2972 125 ESQCEITFVKRLK 137 (143)
Q Consensus 125 ~~g~tl~fv~rlr 137 (143)
++|++||++.|++
T Consensus 69 ~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 69 GPNSKLNLVVKPL 81 (81)
T ss_dssp CSSBCCEEECCCC
T ss_pred CCCCEEEEEEeCC
Confidence 9999999998874
No 24
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=103.23 Aligned_cols=77 Identities=17% Similarity=0.301 Sum_probs=64.2
Q ss_pred hhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchh
Q psy2972 41 ELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLL 119 (143)
Q Consensus 41 al~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL 119 (143)
.++....|+|+| ..+|+.+.+.| ++++||.+||+.|++.+ |.++ .+|+|+|+|+.| +|+.+|
T Consensus 11 ~~~~~~~m~i~Vk~~~g~~~~~~v-~~~~tV~~lK~~i~~~~-------gip~--------~~qrLi~~Gk~L-~D~~tL 73 (88)
T 4eew_A 11 AVEEPDSLEVLVKTLDSQTRTFIV-GAQMNVKEFKEHIAASV-------SIPS--------EKQRLIYQGRVL-QDDKKL 73 (88)
T ss_dssp ----CCEEEEEEEETTSCEEEEEE-ETTCBHHHHHHHHHHHH-------TCCG--------GGEEEEETTEEC-CTTSBG
T ss_pred eecCCCeEEEEEEcCCCCEEEEEE-CCCCCHHHHHHHHHHHh-------CCCH--------HHEEEEECCEEC-CCCCcH
Confidence 345567899999 77899999999 88999999999999964 3322 477999999999 578999
Q ss_pred hhhCCCCCCEEEEEee
Q psy2972 120 SELGIESQCEITFVKR 135 (143)
Q Consensus 120 ~dyGI~~g~tl~fv~r 135 (143)
.+||| +|++||++.|
T Consensus 74 ~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 74 QEYNV-GGKVIHLVER 88 (88)
T ss_dssp GGGTC-TTEEEEEEEC
T ss_pred HHcCC-CCcEEEEEEC
Confidence 99999 8999999976
No 25
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.62 E-value=1.9e-15 Score=103.24 Aligned_cols=77 Identities=17% Similarity=0.299 Sum_probs=66.6
Q ss_pred CCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhC
Q psy2972 45 GQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELG 123 (143)
Q Consensus 45 g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyG 123 (143)
...|+|+| ..+|+.+.+.| .+++||.+||+.|++.+ |++. .+++|+|+|+.| +|+.+|.+||
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v-~~~~tV~~lK~~i~~~~-------gip~--------~~qrLi~~Gk~L-~d~~tL~~~~ 65 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIV-GAQMNVKEFKEHIAASV-------SIPS--------EKQRLIYQGRVL-QDDKKLQEYN 65 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEE-ETTCBHHHHHHHHHHHH-------TCCG--------GGEEEEETTEEC-CTTSBGGGGT
T ss_pred CcEEEEEEEcCCCCEEEEEE-CCCCCHHHHHHHHHHHh-------CCCH--------HHEEEEECCeEC-CCCCCHHHcC
Confidence 35799999 88899999999 88999999999999964 4322 477999999999 5789999999
Q ss_pred CCCCCEEEEEeeeccc
Q psy2972 124 IESQCEITFVKRLKDK 139 (143)
Q Consensus 124 I~~g~tl~fv~rlr~k 139 (143)
| +|++||++.++++-
T Consensus 66 i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 66 V-GGKVIHLVERAPPQ 80 (90)
T ss_dssp C-TTEEEEEEECCCC-
T ss_pred C-CCcEEEEEecCCCC
Confidence 9 99999999998764
No 26
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=105.59 Aligned_cols=76 Identities=14% Similarity=0.280 Sum_probs=65.0
Q ss_pred CCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 45 GQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 45 g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
...|+|+|+. |+.+.+.| ++++||.+||++|++.. |+++ .+|+|+|+|+.| +|+.+|.+|||
T Consensus 17 ~~~m~I~Vk~-g~~~~l~v-~~~~TV~~LK~~I~~~~-------gip~--------~~qrLi~~Gk~L-~D~~tL~~y~I 78 (93)
T 2l7r_A 17 RGSMQLFVRA-QELHTFEV-TGQETVAQIKAHVASLE-------GIAP--------EDQVVLLAGAPL-EDEATLGQCGV 78 (93)
T ss_dssp ---CEEEEES-SSEEEEEC-CSSCBHHHHHHHHHHHH-------TCCG--------GGCEEEETTEEC-CTTSBHHHHTC
T ss_pred CCcEEEEEEC-CCEEEEEe-CCCCcHHHHHHHHHHHh-------CcCh--------hHEEEEECCEEC-CCCCcHHHCCC
Confidence 3469999955 89999999 88999999999999964 4322 577999999999 58899999999
Q ss_pred CCCCEEEEEeeecc
Q psy2972 125 ESQCEITFVKRLKD 138 (143)
Q Consensus 125 ~~g~tl~fv~rlr~ 138 (143)
++|++||++.|+||
T Consensus 79 ~~gstI~lv~rl~G 92 (93)
T 2l7r_A 79 EALTTLEVAGRMLG 92 (93)
T ss_dssp CSSCEEEEECCCCC
T ss_pred CCCCEEEEEEecCC
Confidence 99999999999998
No 27
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.62 E-value=1.7e-15 Score=107.52 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=64.1
Q ss_pred cCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 44 HGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 44 ~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
.+..|+|+| .+.|+++.|.| .+++||.+||+.|+++ +|++ |.+++|+|+|+.| +|+.||.+|
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v-~p~DTI~~LK~~I~~k-------~Gip--------~~qQrLif~Gk~L-kD~~TL~dY 80 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKC-LGEDSVGDFKKVLSLQ-------IGTQ--------PNKIVLQKGGSVL-KDHISLEDY 80 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEE-ETTSBHHHHHHHHHHH-------HTCC--------GGGEEEEETTEEC-CTTSBTGGG
T ss_pred CCceEEEEEECCCCCEEEEEE-CCcCHHHHHHHHHHHH-------hCCC--------HHHEEEEeCCEEc-cCcCCHHHc
Confidence 345799999 78999999999 9999999999999995 5653 4799999999999 589999999
Q ss_pred CCCCCCEEEEE
Q psy2972 123 GIESQCEITFV 133 (143)
Q Consensus 123 GI~~g~tl~fv 133 (143)
||++|++||+-
T Consensus 81 ~I~dgstLhL~ 91 (93)
T 3plu_A 81 EVHDQTNLELY 91 (93)
T ss_dssp TCCTTCEEEEE
T ss_pred CCCCCCEEEEE
Confidence 99999999974
No 28
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=2.2e-15 Score=107.97 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=62.9
Q ss_pred cEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCC
Q psy2972 47 SIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIE 125 (143)
Q Consensus 47 am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~ 125 (143)
.|+|+| .+.|+.+.|.| ++++||.+||+.|+++ +|++ |.+++|+|+|+.| +|+.+|.+|||+
T Consensus 28 mm~I~VKtl~Gk~i~lev-~p~dTV~~lK~~Ia~k-------~Gip--------~~qQrLi~~Gk~L-~D~~TL~dygI~ 90 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKC-NTDDTIGDLKKLIAAQ-------TGTR--------WNKIVLKKWYTIF-KDHVSLGDYEIH 90 (100)
T ss_dssp EEEEEEECSSSSCEEEEE-ETTSBHHHHHHHHHHH-------HCCC--------GGGCEEEETTEEC-CSSCBHHHHTCC
T ss_pred eEEEEEECCCCCEEEEEe-CCCCcHHHHHHHHHHH-------hCCC--------HHHEEEEECCEEC-CCCCCHHHcCCC
Confidence 499999 78899999999 8999999999999996 4543 3688999999999 689999999999
Q ss_pred CCCEEEEE
Q psy2972 126 SQCEITFV 133 (143)
Q Consensus 126 ~g~tl~fv 133 (143)
+|++||++
T Consensus 91 ~gstlhL~ 98 (100)
T 1uh6_A 91 DGMNLELY 98 (100)
T ss_dssp TTEEEEEE
T ss_pred CCCEEEEE
Confidence 99999986
No 29
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.60 E-value=5.3e-15 Score=102.97 Aligned_cols=75 Identities=19% Similarity=0.353 Sum_probs=66.5
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ..+|+.+.+.| ++++||.+||++|++.. |++ +.+++|+|+|+.| +|+.+|.+|||++
T Consensus 1 M~I~Vk~~~g~~~~~~v-~~~~TV~~LK~~I~~~~-------gi~--------~~~qrL~~~Gk~L-~D~~tL~~~gi~~ 63 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEV-EPSDTIENVKAKIQDKE-------GIP--------PDQQRLIFAGKQL-EDGRTLSDYNIQK 63 (98)
T ss_dssp CEEEEEETTSCEEEEEC-CTTCBHHHHHHHHHHHT-------CCC--------GGGEEEEETTEEC-CTTSBTGGGTCCT
T ss_pred CEEEEEeCCCCEEEEEE-CCCCcHHHHHHHHHHHH-------CcC--------hhhEEEEECCEEC-CCCCCHHHcCCCC
Confidence 89999 77899999999 88999999999999963 432 3578999999999 5789999999999
Q ss_pred CCEEEEEeeeccc
Q psy2972 127 QCEITFVKRLKDK 139 (143)
Q Consensus 127 g~tl~fv~rlr~k 139 (143)
|++|+++.+++|-
T Consensus 64 g~~i~l~~~~~gG 76 (98)
T 1yx5_B 64 ESTLHLVLRLRGG 76 (98)
T ss_dssp TCEEEEEECCCCC
T ss_pred CCEEEEEEeCCCC
Confidence 9999999999964
No 30
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.59 E-value=5.3e-15 Score=103.38 Aligned_cols=77 Identities=23% Similarity=0.347 Sum_probs=66.7
Q ss_pred CCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCccccccc-chhhhh
Q psy2972 45 GQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEK-SLLSEL 122 (143)
Q Consensus 45 g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~-~tL~dy 122 (143)
...|+|+| ..+| .+++.| ++++||.+||+.|++. +|+++ .+++|+|.|+.|. |+ .+|.+|
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v-~~~~TV~~LK~~I~~~-------~gip~--------~~QrLi~~Gk~L~-D~~~tL~~y 74 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEV-DRTETVSSLKDKIHIV-------ENTPI--------KRMQLYYSGIELA-DDYRNLNEY 74 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEE-CTTCBHHHHHHHHHHH-------SSSCT--------TTEEEEETTEEEC-CTTSBHHHH
T ss_pred CCCEEEEEEcCCc-EEEEEE-CCCCcHHHHHHHHHHH-------HCcCH--------HHEEEEECCEECC-CCcccHHHC
Confidence 35699999 5555 899999 8999999999999996 45433 6889999999995 66 999999
Q ss_pred CCCCCCEEEEEeeeccc
Q psy2972 123 GIESQCEITFVKRLKDK 139 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~k 139 (143)
||++|++|+++.|++|-
T Consensus 75 gI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 75 GITEFSEIVVFLKSINR 91 (94)
T ss_dssp TCCTTEEEEEEECCCSS
T ss_pred CCCCCCEEEEEEeCCCC
Confidence 99999999999999984
No 31
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.59 E-value=8.1e-15 Score=98.62 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=64.5
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
..|+|+| ..+|+.+.+.| ++++||.+||+.|++.+. .+|++ +.+++|+|+|+.| +|+.+|.+|||
T Consensus 4 ~~m~i~vk~~~g~~~~~~v-~~~~TV~~lK~~i~~~~~----~~gip--------~~~qrLi~~Gk~L-~D~~tL~~~~i 69 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRM-EPDETVKVLKEKIEAEKG----RDAFP--------VAGQKLIYAGKIL-SDDVPIRDYRI 69 (85)
T ss_dssp CCEEEEEEETTSCEEEEEE-CTTSBHHHHHHHHHHHHC----TTTCC--------GGGEEEEETTEEC-CTTSBGGGGCC
T ss_pred ceEEEEEEECCCCEEEEEE-CCCCCHHHHHHHHHhhcc----ccCCC--------HHHeEEEECCEEC-cCCCCHHHcCC
Confidence 4699999 77899999999 889999999999999631 13332 3588999999999 57899999999
Q ss_pred CCCCEEEEEee
Q psy2972 125 ESQCEITFVKR 135 (143)
Q Consensus 125 ~~g~tl~fv~r 135 (143)
++|++||++.+
T Consensus 70 ~~g~~i~l~~~ 80 (85)
T 2wyq_A 70 DEKNFVVVMVT 80 (85)
T ss_dssp CTTSEEEEEEC
T ss_pred CCCCEEEEEEc
Confidence 99999999865
No 32
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.58 E-value=5.2e-15 Score=105.87 Aligned_cols=76 Identities=18% Similarity=0.351 Sum_probs=67.6
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
..|+|+| ..+|+.+.+.| ++++||.+||++|++.. |++ +.+++|+|+|+.| +|+.+|++|||
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v-~~~~TV~~LK~~I~~~~-------gip--------~~~qrLi~~Gk~L-~D~~tL~~~gI 96 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEV-EPSDTIENVKAKIQDKE-------GIP--------PDQQRLIFAGKQL-EDGRTLSDYNI 96 (111)
T ss_dssp SCEEEEEECSSSCEEEEEE-CTTCBHHHHHHHHHHHH-------CCC--------TTTEEEEETTEEC-CSSCBTTTTTC
T ss_pred CeEEEEEEcCCCCEEEEEe-CCCCCHHHHHHHHHHHH-------CcC--------cccEEEEECCEEC-CCCCcHHHcCC
Confidence 4699999 77899999999 88999999999999964 332 3578999999999 57899999999
Q ss_pred CCCCEEEEEeeecc
Q psy2972 125 ESQCEITFVKRLKD 138 (143)
Q Consensus 125 ~~g~tl~fv~rlr~ 138 (143)
++|++||++.|+||
T Consensus 97 ~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 97 QKESTLHLVLRLRG 110 (111)
T ss_dssp CTTCEEEEEECCCC
T ss_pred CCCCEEEEEEeCCC
Confidence 99999999999997
No 33
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.58 E-value=7.1e-15 Score=112.85 Aligned_cols=76 Identities=18% Similarity=0.357 Sum_probs=67.2
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| .++|+.+.+.| ++++||.+||+.|++. +|++ +.+|+|+|+|+.| +|+.+|.+|||++
T Consensus 1 MqI~Vk~~~Gk~~~l~v-~~~~TV~~LK~~I~~~-------~gip--------~~~QrLi~~Gk~L-~D~~tL~~y~I~~ 63 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEV-ESSDTIDNVKSKIQDK-------EGIP--------PDQQRLIFAGKQL-EDGRTLSDYNIQK 63 (169)
T ss_dssp CEEEEEETTSCEEEEEC-CTTCBHHHHHHHHHHH-------HCCC--------TTTEEEEETTEEC-CTTSBGGGGTCCT
T ss_pred CEEEEEeCCCCEEEEEe-CCCCCHHHHHHHHHHH-------HCcC--------HHHEEEEECCccc-cCcCcHHHcCCCC
Confidence 89999 88999999999 8999999999999996 3443 3688999999999 5789999999999
Q ss_pred CCEEEEEeeecccc
Q psy2972 127 QCEITFVKRLKDKV 140 (143)
Q Consensus 127 g~tl~fv~rlr~k~ 140 (143)
|++||++.|+||-.
T Consensus 64 gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 64 ESTLHLVLRLRGGG 77 (169)
T ss_dssp TCEEEEEECCCC--
T ss_pred CCEEEEEEEecccc
Confidence 99999999999864
No 34
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.57 E-value=1.3e-14 Score=95.67 Aligned_cols=71 Identities=17% Similarity=0.340 Sum_probs=61.5
Q ss_pred EEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCC
Q psy2972 48 IMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQ 127 (143)
Q Consensus 48 m~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g 127 (143)
|+|+|+.+|+.+.+.| ++++||.+||+.|++.. |++ +.+++|+|+|+.| +|+.+|++|||++|
T Consensus 5 m~i~vk~~g~~~~~~v-~~~~tV~~LK~~i~~~~-------~i~--------~~~qrL~~~gk~L-~d~~tL~~~~i~~g 67 (77)
T 2bwf_A 5 LNIHIKSGQDKWEVNV-APESTVLQFKEAINKAN-------GIP--------VANQRLIYSGKIL-KDDQTVESYHIQDG 67 (77)
T ss_dssp EEEEEEETTEEEEEEE-CTTCBHHHHHHHHHHHH-------CCC--------GGGEEEEETTEEC-CTTSBTGGGTCCTT
T ss_pred EEEEEEECCEEEEEEE-CCCCcHHHHHHHHHHHh-------CCC--------HHHEEEEECCeEc-CCCCCHHHcCCCCC
Confidence 8899944999999999 88999999999999964 432 2578999999999 57899999999999
Q ss_pred CEEEEEee
Q psy2972 128 CEITFVKR 135 (143)
Q Consensus 128 ~tl~fv~r 135 (143)
++||++.+
T Consensus 68 ~~i~l~~~ 75 (77)
T 2bwf_A 68 HSVHLVKS 75 (77)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEc
Confidence 99999864
No 35
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=4.4e-15 Score=106.42 Aligned_cols=73 Identities=16% Similarity=0.159 Sum_probs=62.0
Q ss_pred EEEE-EeC----CceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhC
Q psy2972 49 MCCI-QAD----NKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELG 123 (143)
Q Consensus 49 ~l~V-k~~----g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyG 123 (143)
+|.| ..+ ++.+++.| ++++||.+||+.|+++ +|++ +.+|+|||+|+.| +|+.||.+||
T Consensus 17 ti~V~~~~~~~~~~~~~lev-~~~~TV~~lK~kI~~k-------~gip--------~~qQrLI~~GKiL-~D~~TL~~y~ 79 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLET-RLHITGRELRSKIAET-------FGLQ--------ENYIKIVINKKQL-QLGKTLEEQG 79 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEE-ESSSBHHHHHHHHHHH-------TTCC--------STTCEEEETTEEC-CTTSBHHHHT
T ss_pred EEEEEecCCCCCCcEEEEEe-CCcCHHHHHHHHHHHH-------HCcC--------HHHeEEEeCCeEC-CCCCcHHHcC
Confidence 4555 344 67899999 8999999999999996 4543 3689999999999 5889999999
Q ss_pred CCCCCEEEEEeeeccc
Q psy2972 124 IESQCEITFVKRLKDK 139 (143)
Q Consensus 124 I~~g~tl~fv~rlr~k 139 (143)
|++|++| ++.+|||-
T Consensus 80 I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 80 VAHNVKA-MVLELKQS 94 (100)
T ss_dssp CCSSEEE-EEECCCCC
T ss_pred CCCCCEE-EEEEECCC
Confidence 9999999 88999874
No 36
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.57 E-value=1.1e-14 Score=104.10 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=69.8
Q ss_pred ccCCcEEEEE-Ee---CCceEEEEecCC-CCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccc
Q psy2972 43 LHGQSIMCCI-QA---DNKKFDIVISPK-NTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKS 117 (143)
Q Consensus 43 ~~g~am~l~V-k~---~g~~~~V~V~~~-~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~ 117 (143)
.+...|+|+| .. +|+.+.+.| ++ ++||.+||+.|+.. .|++. .+++|+|+|+.| +|+.
T Consensus 23 ~~~~~i~i~Vk~~~~~~g~~~~l~v-~~l~~TV~~LK~~I~~~-------~gip~--------~~QrL~~~Gk~L-~D~~ 85 (111)
T 1we6_A 23 QHPGPATIRVSKPNENDGQFMEITV-QSLSENVGSLKEKIAGE-------IQIPA--------NKQKLSGKAGFL-KDNM 85 (111)
T ss_dssp HCCSCEEEEECCTTCSSSCCEEEEE-SCSSSBHHHHHHHHHHH-------TTCCT--------TTSEEECSSSBC-CTTS
T ss_pred hCCCcEEEEEEecccCCCcEEEEEe-cCCCCcHHHHHHHHHHH-------HCCCH--------HHeEEEECCEEC-CCCC
Confidence 3556799999 66 789999999 87 89999999999996 34432 577999999988 5789
Q ss_pred hhhhhCCCCCCEEEEEeeecccc
Q psy2972 118 LLSELGIESQCEITFVKRLKDKV 140 (143)
Q Consensus 118 tL~dyGI~~g~tl~fv~rlr~k~ 140 (143)
+|.+|||++|++||++.|+||-+
T Consensus 86 tL~~y~I~~g~~l~l~~r~~GGk 108 (111)
T 1we6_A 86 SLAHYNVGAGEILTLSLRERSGP 108 (111)
T ss_dssp BTTTTTCSSSCEEEEECSSCCSS
T ss_pred cHHHCCCCCCCEEEEEEEcCCCC
Confidence 99999999999999999999864
No 37
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=1.4e-14 Score=100.68 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=64.2
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ..+|+.+.+.| ++++||.+||+.|++.+. .+|++ +.+++|+|+|+.| +|+.+|.+|||++
T Consensus 1 M~I~Vk~~~g~~~~~~v-~~~~TV~~LK~~I~~~~~----~~gip--------~~~qrLi~~Gk~L-~D~~tL~~ygI~~ 66 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDI-DPEETVKALKEKIESEKG----KDAFP--------VAGQKLIYAGKIL-NDDTALKEYKIDE 66 (95)
T ss_dssp CEEEEEETTCCEEEEEC-CTTSBHHHHHHHHHHHHC----TTTCC--------TTTEEEEETTEEC-CTTSBGGGGTCCS
T ss_pred CEEEEEeCCCCEEEEEE-CCCCHHHHHHHHHHhhcc----cCCCC--------hhhEEEEECCEEC-CCcCcHHHCCCCC
Confidence 89999 77899999999 889999999999999631 13432 3688999999999 5789999999999
Q ss_pred CCEEEEEeee
Q psy2972 127 QCEITFVKRL 136 (143)
Q Consensus 127 g~tl~fv~rl 136 (143)
|++|+++.+.
T Consensus 67 g~~i~l~~~~ 76 (95)
T 1uel_A 67 KNFVVVMVTK 76 (95)
T ss_dssp SSEEEEEESS
T ss_pred CCEEEEEEeC
Confidence 9999998764
No 38
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=4.9e-15 Score=102.42 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=66.5
Q ss_pred CcEEEEE-EeCCc--eEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 46 QSIMCCI-QADNK--KFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 46 ~am~l~V-k~~g~--~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
..|+|+| ..+++ .+.|.| ++++||.+||+.|++.+ +.|.+ +.+|+|+|.|+.|. |+.+|.+|
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v-~~~~TV~~lK~~I~~~~-----~~~i~--------~~~QrLi~~Gk~L~-D~~tL~~~ 70 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSG-DRGWSVGHLKAHLSRVY-----PERPR--------PEDQRLIYSGKLLL-DHQCLRDL 70 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEEC-CTTSCHHHHHHHHHHHS-----TTCCC--------TTTCEEEETTEECC-SSSCHHHH
T ss_pred cEEEEEEEeCCCCeEEEEEec-CCCCcHHHHHHHHHHHh-----cCCCC--------hHHeEEEECCEECc-CcCCHHHH
Confidence 4699999 77777 577777 78999999999999963 12332 36889999999994 78999999
Q ss_pred --CCCCCCEEEEEeeecccc
Q psy2972 123 --GIESQCEITFVKRLKDKV 140 (143)
Q Consensus 123 --GI~~g~tl~fv~rlr~k~ 140 (143)
||++|++||++.++||-.
T Consensus 71 ~~~i~~~~~i~lv~~~~gg~ 90 (93)
T 1wgd_A 71 LPKQEKRHVLHLVCNVKSGP 90 (93)
T ss_dssp SCSSSCSEEEEEECCCCCCC
T ss_pred hcCCCCCCEEEEEeCCCCCC
Confidence 999999999999999853
No 39
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.56 E-value=1.3e-14 Score=107.81 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=71.1
Q ss_pred cCCcEEEEE-EeCCceE-EEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhh
Q psy2972 44 HGQSIMCCI-QADNKKF-DIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSE 121 (143)
Q Consensus 44 ~g~am~l~V-k~~g~~~-~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~d 121 (143)
-...|.|+| ..+|+.+ ++.+ ++++||.+||+.|+... .++++|+|.. ..+++|||+|+.| +|+.||++
T Consensus 13 ~~~~~~i~~kt~~G~~i~~l~v-~psdTV~~lK~kI~~~~--p~dkegiP~~------~~qQrLIy~GK~L-eD~~TLsd 82 (126)
T 1se9_A 13 VHNQLEIKFRLTDGSDIGPKAF-PDATTVSALKETVISEW--PREKENGPKT------VKEVKLISAGKVL-ENSKTVKD 82 (126)
T ss_dssp SCCCEEEEEEETTSCEEEEEEE-CTTCBHHHHHHHHHHHS--CTTCSSSCCS------GGGEEEEETTEEC-CTTSBGGG
T ss_pred hcccEEEEEEECCCCEEEeeec-CccCHHHHHHHHHHhhc--ccccccCCCC------hhhEEEEECCeEC-cCCCcHHH
Confidence 346899999 9999888 7999 89999999999998753 1234554321 2599999999999 58999999
Q ss_pred hCCCCC------CEEEEEeeeccc
Q psy2972 122 LGIESQ------CEITFVKRLKDK 139 (143)
Q Consensus 122 yGI~~g------~tl~fv~rlr~k 139 (143)
|+|.+| .++|+|.|+||-
T Consensus 83 y~I~~~~~~~~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 83 YRSPVSNLAGAVTTMHVIIQAPVT 106 (126)
T ss_dssp GSCCTTSCTTCCEEEEEEECCCSS
T ss_pred cCCCcCCccCCcEEEEEEeccCCc
Confidence 999999 689999999973
No 40
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=1e-14 Score=102.93 Aligned_cols=78 Identities=10% Similarity=0.207 Sum_probs=65.9
Q ss_pred cEEEEE-EeCC----ceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhh
Q psy2972 47 SIMCCI-QADN----KKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSE 121 (143)
Q Consensus 47 am~l~V-k~~g----~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~d 121 (143)
.|+|+| ..++ +.+.+.| ++++||.+||+.|++.. |++ +.+++|+|.|+.|.||..+|.+
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v-~~~~TV~~LK~~I~~~~-------gip--------~~~qrL~~~gk~L~D~~~tL~~ 70 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQV-NPDFELSNFRVLCELES-------GVP--------AEEAQIVYMEQLLTDDHCSLGS 70 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEE-CTTCBHHHHHHHHHHHT-------CCC--------GGGBCEEETTEEECCSSSBHHH
T ss_pred eEEEEEEECCCCcCceEEEEEc-CCCCCHHHHHHHHHHHH-------CcC--------hHHeEEEECCEECCCCcccHHH
Confidence 599999 5444 7899999 88999999999999964 432 2577999999999655589999
Q ss_pred hCCCCCCEEEEEeeecccc
Q psy2972 122 LGIESQCEITFVKRLKDKV 140 (143)
Q Consensus 122 yGI~~g~tl~fv~rlr~k~ 140 (143)
|||++|++||++.+.||-.
T Consensus 71 ygI~~g~~l~l~~~~~gg~ 89 (102)
T 1v5o_A 71 YGLKDGDMVVLLQKDNVGL 89 (102)
T ss_dssp HTCCTTEEEEECBCCCCCC
T ss_pred CCCCCCCEEEEEECCCCCC
Confidence 9999999999999998853
No 41
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=7.2e-15 Score=101.79 Aligned_cols=78 Identities=19% Similarity=0.285 Sum_probs=67.0
Q ss_pred CcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCC
Q psy2972 46 QSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIE 125 (143)
Q Consensus 46 ~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~ 125 (143)
..|+|+|+..|+.+.+.| ++++||.+||++|++. .|++ +.+++|+|.|+.| +|+.+|.+|||+
T Consensus 16 ~~m~i~Vk~~g~~~~~~v-~~~~TV~~LK~~I~~~-------~gip--------~~~qrL~~~Gk~L-~D~~tL~~~gi~ 78 (96)
T 1wx8_A 16 RIIRVSVKTPQDCHEFFL-AENSNVRRFKKQISKY-------LHCN--------ADRLVLIFTGKIL-RDQDILSQRGIL 78 (96)
T ss_dssp CEEEEEEECSSSEEEEEE-ETTCCHHHHHHHHHHH-------TCSC--------TTTBCCEETTEEC-CTTSCHHHHTCC
T ss_pred CcEEEEEEECCeEEEEEE-CCCCCHHHHHHHHHHH-------hCCC--------HHHEEEEECCEEC-CCcCCHHHCCCC
Confidence 469999944499999999 8899999999999996 3432 2577999999999 578999999999
Q ss_pred CCCEEEEEeeecccc
Q psy2972 126 SQCEITFVKRLKDKV 140 (143)
Q Consensus 126 ~g~tl~fv~rlr~k~ 140 (143)
+|++||++.+++|..
T Consensus 79 ~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 79 DGSTVHVVVRSHSGP 93 (96)
T ss_dssp TTEEEECCBCCSSCS
T ss_pred CCCEEEEEEeCCCCC
Confidence 999999999998853
No 42
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=2.2e-14 Score=101.80 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=67.1
Q ss_pred cCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 44 HGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 44 ~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
.+..|+|+| ..+|+.+.+.| .+++||.+||+.|+.. .|++. .+++|+|+|+.| +|+.+|.+|
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v-~~~~TV~~LK~~I~~~-------~gip~--------~~qrLi~~Gk~L-~D~~tL~~y 82 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVV-RSTDTVFHMKRRLHAA-------EGVEP--------GSQRWFFSGRPL-TDKMKFEEL 82 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEE-CTTSHHHHHHHHHHHT-------TCCCS--------TTCEEEETTEEC-CTTSHHHHC
T ss_pred CCCeEEEEEEcCCCCEEEEEe-CCCCcHHHHHHHHHHH-------HCcCc--------ccEEEEECCEEC-CCCCcHHHc
Confidence 456799999 77899999999 8899999999999985 45432 578999999999 588999999
Q ss_pred CCCCCCEEEEEeeecc
Q psy2972 123 GIESQCEITFVKRLKD 138 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~ 138 (143)
||++|++||++.+...
T Consensus 83 gI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 83 KIPKDYVVQVIVSQPV 98 (106)
T ss_dssp CCSSSCEEEEECCCSS
T ss_pred CCCCCCEEEEEEeCCC
Confidence 9999999999987654
No 43
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=1.7e-14 Score=101.80 Aligned_cols=76 Identities=17% Similarity=0.312 Sum_probs=65.7
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
..|+|+| ..+|+ +.+.| ++++||.+||+.|++.. |++. .+++|+|.|+.| +|+.+|.+|||
T Consensus 21 ~~m~I~Vk~~~g~-~~l~v-~~~~TV~~LK~~I~~~~-------gip~--------~~QrLi~~Gk~L-~D~~tL~~ygI 82 (100)
T 1yqb_A 21 HLIKVTVKTPKDK-EDFSV-TDTCTIQQLKEEISQRF-------KAHP--------DQLVLIFAGKIL-KDPDSLAQCGV 82 (100)
T ss_dssp TEEEEEEECSSCE-EEEEE-ETTCBHHHHHHHHHHHH-------TCCG--------GGEEEEETTEEC-CTTSBHHHHTC
T ss_pred CeEEEEEEcCCCc-EEEEE-CCCCcHHHHHHHHHHHH-------CcCh--------hhEEEEECCEEC-CCcCcHHHCCC
Confidence 4699999 66675 79999 88999999999999964 4322 578999999999 57899999999
Q ss_pred CCCCEEEEEeeeccc
Q psy2972 125 ESQCEITFVKRLKDK 139 (143)
Q Consensus 125 ~~g~tl~fv~rlr~k 139 (143)
++|++|+++.++++.
T Consensus 83 ~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 83 RDGLTVHLVIKRQHR 97 (100)
T ss_dssp CTTCEEEEEECCCCS
T ss_pred CCCCEEEEEEcCCCC
Confidence 999999999999875
No 44
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.3e-14 Score=102.61 Aligned_cols=80 Identities=16% Similarity=0.297 Sum_probs=70.0
Q ss_pred CCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhC
Q psy2972 45 GQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELG 123 (143)
Q Consensus 45 g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyG 123 (143)
-...+|+| .++|+.+++.| ++++||.+||++|++.. |+++ .+++|+|+|+.| +|+.+|.+||
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v-~~~~TV~~LK~~I~~~~-------gip~--------~~qrLi~~Gk~L-~D~~tL~~yg 69 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEV-ESSDTIDNVKSKIQDKE-------GIPP--------DQQRLIWAGKQL-EDGRTLSDYN 69 (114)
T ss_dssp CCCCEEEEEETTCCEEEEEC-CTTCBHHHHHHHHHHHH-------CCCG--------GGEEEEETTEEC-CTTCBTTTTT
T ss_pred CCcEEEEEEeCCCcEEEEEE-CCCCcHHHHHHHHHHHH-------CcCh--------HHEEEEECCEEC-CCCCcHHHCC
Confidence 34589999 99999999999 88999999999999963 4432 578999999999 5889999999
Q ss_pred CCCCCEEEEEeeeccccc
Q psy2972 124 IESQCEITFVKRLKDKVR 141 (143)
Q Consensus 124 I~~g~tl~fv~rlr~k~~ 141 (143)
|++|++|+++.+++|-..
T Consensus 70 I~~gstI~l~~~~~GG~~ 87 (114)
T 2kdi_A 70 IQRESTLHLVLRLRGGSM 87 (114)
T ss_dssp CCSSCEEEEEECCCSSCC
T ss_pred CCCCCEEEEEEEcCCCce
Confidence 999999999999998643
No 45
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.54 E-value=4.5e-14 Score=103.24 Aligned_cols=76 Identities=18% Similarity=0.350 Sum_probs=67.7
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
..|+|+| ..+|+.+.+.| ++++||.+||++|++.. |++ +.+++|+|.|+.| +|+.+|.+|||
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v-~~~~tv~~lK~~i~~~~-------gi~--------~~~qrL~~~g~~L-~d~~tL~~~~i 137 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEV-EPSDTIENVKAKIQDKE-------GIP--------PDQQRLIFAGKQL-EDGRTLSDYNI 137 (152)
T ss_dssp TCEEEEEEESSSCEEEEEE-CTTCBHHHHHHHHHHHH-------CCC--------GGGEEEEETTEEC-CTTSBTGGGTC
T ss_pred cccceeeeecCCCEEEEEe-CCCCcHHHHHHHHHHHh-------CcC--------hhhEEEEECCEEC-CCCCCHHHcCC
Confidence 4599999 88999999999 88999999999999963 433 2578999999999 58899999999
Q ss_pred CCCCEEEEEeeecc
Q psy2972 125 ESQCEITFVKRLKD 138 (143)
Q Consensus 125 ~~g~tl~fv~rlr~ 138 (143)
++|++||++.|+||
T Consensus 138 ~~~~~i~l~~r~~G 151 (152)
T 3b08_A 138 QKESTLHLVLRLRG 151 (152)
T ss_dssp CTTCEEEEEECCCC
T ss_pred CCCCEEEEEEecCC
Confidence 99999999999998
No 46
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.54 E-value=4.1e-14 Score=99.90 Aligned_cols=82 Identities=20% Similarity=0.342 Sum_probs=66.7
Q ss_pred hhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhh
Q psy2972 41 ELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLS 120 (143)
Q Consensus 41 al~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~ 120 (143)
.......|+|+|+..|+.+.+.| ++++||.+||+.|++.. |++. .+++|+|.|+.| +|+.+|.
T Consensus 19 ~~~~~~~m~I~Vk~~g~~~~l~v-~~~~TV~~LK~~I~~~~-------gip~--------~~qrLi~~Gk~L-~D~~tL~ 81 (101)
T 2klc_A 19 FQGHPKIMKVTVKTPKEKEEFAV-PENSSVQQFKEEISKRF-------KSHT--------DQLVLIFAGKIL-KDQDTLS 81 (101)
T ss_dssp ----CCCEEEEEECSSCEEEEEE-CSCCCHHHHHHHHHHHH-------TCCG--------GGEEEEETTEEE-CTTCCTG
T ss_pred cCCCCCeEEEEEEeCCcEEEEEE-CCCCCHHHHHHHHHHHH-------CcCh--------hhEEEEECCEEC-CCcCcHH
Confidence 33445679999944489999999 88999999999999964 4322 578999999999 5789999
Q ss_pred hhCCCCCCEEEEEeeeccc
Q psy2972 121 ELGIESQCEITFVKRLKDK 139 (143)
Q Consensus 121 dyGI~~g~tl~fv~rlr~k 139 (143)
+|||++|++|+++.+++.+
T Consensus 82 ~~gI~~g~~I~l~~~~~~~ 100 (101)
T 2klc_A 82 QHGIHDGLTVHLVIKTQNR 100 (101)
T ss_dssp GGTCCTTCEEEEEECCSSC
T ss_pred HcCCCCCCEEEEEEcCCCC
Confidence 9999999999999988653
No 47
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.2e-14 Score=103.44 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=62.6
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ..+|+.+.+.| ++++||.+||+.|++.+ |++. .+++|+|.|+.| +|+.+|.+|||++
T Consensus 2 m~I~Vk~~~g~~~~l~v-~~~~TV~~LK~~I~~~~-------gip~--------~~QrLi~~Gk~L-~D~~tL~~~~i~~ 64 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDL-EPSNTILETKTKLAQSI-------SCEE--------SQIKLIYSGKVL-QDSKTVSECGLKD 64 (106)
T ss_dssp -CEEEECTTCCEEEECC-CTTSBHHHHHHHHHHTT-------TSCG--------GGCEEEETTEEC-CTTSBTTTTTCCT
T ss_pred EEEEEEeCCCCEEEEEE-CCCCcHHHHHHHHHHHH-------CCCh--------hhEEEEECCEEC-CCcCCHHHcCCCC
Confidence 89999 67999999999 89999999999999953 4322 477999999999 5789999999999
Q ss_pred CCEEEEEeeec
Q psy2972 127 QCEITFVKRLK 137 (143)
Q Consensus 127 g~tl~fv~rlr 137 (143)
|++||++.+-.
T Consensus 65 g~~i~lv~~~~ 75 (106)
T 3m62_B 65 GDQVVFMVSQK 75 (106)
T ss_dssp TCEEEEECCC-
T ss_pred CCEEEEEEcCC
Confidence 99999998743
No 48
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=108.48 Aligned_cols=78 Identities=18% Similarity=0.365 Sum_probs=65.2
Q ss_pred cCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 44 HGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 44 ~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
....|+|+| ..+|+.+++.| .+++||.+||+.|+.. +|++. .+|+|+|+|+.| +|+.+|.+|
T Consensus 93 ~~gg~~i~Vk~~~g~~~~l~v-~~~~tV~~lK~~I~~~-------~gip~--------~~q~L~~~g~~L-~D~~tL~~y 155 (172)
T 3u30_A 93 LRGGMQIFVKTLTGKTITLEV-EPSDTIENVKAKIQDK-------EGIPP--------DQQRLIFAGKQL-EDGRTLSDY 155 (172)
T ss_dssp CCCCEEEEEEESSCCEEEEEE-CTTCBHHHHHHHHHHH-------HCCCG--------GGCCEEETTEEC-CTTSBSGGG
T ss_pred ccccccceeecccCcceeEEe-cCCCCHHHHHHHHHHH-------hCCCc--------eeEEEEECCccC-CCCCcHHHh
Confidence 334589999 88899999999 8999999999999996 45433 578999999999 588999999
Q ss_pred CCCCCCEEEEEeeecc
Q psy2972 123 GIESQCEITFVKRLKD 138 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~ 138 (143)
||++|++||++.|+||
T Consensus 156 ~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 156 NIQKESTLHLVLRLRG 171 (172)
T ss_dssp TCCTTCEEEECC----
T ss_pred CCCCCCEEEEEEecCC
Confidence 9999999999999998
No 49
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.52 E-value=2.8e-14 Score=105.56 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=68.5
Q ss_pred CCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHh-hcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 45 GQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMK-RKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 45 g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~-reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
+..|.|+| +++|+.+++.| ++++||.+||+.|++.+. .. +||++. -+.+++|||+|+.| +|+.||.+|
T Consensus 15 ~~~m~I~vktl~G~~~~lev-~~s~TV~~lK~~I~~~~p--~dwke~ip~------~~~~qrLIy~GK~L-eD~~TL~~y 84 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLF-SPNDSASDIAKHVYDNWP--MDWEEEQVS------SPNILRLIYQGRFL-HGNVTLGAL 84 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEE-CTTSBHHHHHHHHHSSCC--CSCCCCTTC------CGGGEEEESSSSEE-ESSCBTGGG
T ss_pred CCeEEEEEEeCCCCEEEEEe-CCccHHHHHHHHHHHHCC--cccccCCCC------ChHHEEEEECCcCC-CCCCcHHHc
Confidence 44599999 78899999999 999999999999998431 11 244321 04699999999999 588999999
Q ss_pred CCCCCC--EEEEEeeecc
Q psy2972 123 GIESQC--EITFVKRLKD 138 (143)
Q Consensus 123 GI~~g~--tl~fv~rlr~ 138 (143)
||..|+ ++|++.|+++
T Consensus 85 ~I~~~~~~tlhlv~r~~~ 102 (125)
T 2gow_A 85 KLPFGKTTVMHLVARETL 102 (125)
T ss_dssp CCCTTSEEEEEEEECSCC
T ss_pred CCCCCCceEEEEEecCCC
Confidence 999877 7899999986
No 50
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.52 E-value=2.7e-14 Score=112.21 Aligned_cols=78 Identities=18% Similarity=0.322 Sum_probs=68.9
Q ss_pred cEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCC
Q psy2972 47 SIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIE 125 (143)
Q Consensus 47 am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~ 125 (143)
.|+|+| .++|+.+++.| ++++||.+||+.|++.. |+++ .+|+|+|+|+.| +|+.+|.+|||+
T Consensus 105 eMqI~VKtl~Gkt~~l~V-~~s~TV~~LK~kI~~~~-------gIp~--------~~QrLi~~Gk~L-~D~~tL~dygI~ 167 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEV-EPSDTIENVKAKIQDKE-------GIPP--------DQQRLIFAGKQL-EDGRTLSDYNIQ 167 (189)
T ss_dssp CEEEEEECTTSCEEEEEE-CTTCBHHHHHHHHHHHH-------CCCG--------GGCCEEETTEEC-CTTCBGGGGTCC
T ss_pred ceeeeeecCCCCEEEEEe-CCCCcHHHHHHHHHhcc-------CCCH--------HHEEEEECCEEC-CCCCCHHHCCCC
Confidence 499999 78899999999 89999999999999963 4432 477999999999 578999999999
Q ss_pred CCCEEEEEeeeccccc
Q psy2972 126 SQCEITFVKRLKDKVR 141 (143)
Q Consensus 126 ~g~tl~fv~rlr~k~~ 141 (143)
+|++||++.|+||-..
T Consensus 168 ~gstI~LvlrlrGG~~ 183 (189)
T 3q3f_A 168 KESTLHLVLRLRGGGQ 183 (189)
T ss_dssp TTCEEEECCCCCCCCC
T ss_pred CCCEEEEEEEcCCCCc
Confidence 9999999999998644
No 51
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.52 E-value=4.3e-14 Score=100.35 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=61.8
Q ss_pred CCcEEEEE-EeCCceEEE--EecCCCCcHHHHHHHH-HHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhh
Q psy2972 45 GQSIMCCI-QADNKKFDI--VISPKNTRVSDLKRTI-ERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLS 120 (143)
Q Consensus 45 g~am~l~V-k~~g~~~~V--~V~~~~aTV~dLK~aI-~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~ 120 (143)
...|+|+| +++|+.|++ .| ++++||.+||+.| ++. +|++ +.+|+|+|+|+.| .|+.+|+
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v-~~~~TV~~lK~~I~~~~-------~gip--------~~~QrLi~~Gk~L-~D~~tL~ 79 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDF-SPSDTILQIKQHLISEE-------KASH--------ISEIKLLLKGKVL-HDNLFLS 79 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEE-CTTCBHHHHHHHHHHTT-------SCSC--------GGGEEEEETTEEE-CTTCBGG
T ss_pred CCCEEEEEEcCCCCEEEEEEec-CCCChHHHHHHHHHHHh-------cCCC--------hhhEEEEECCEEC-cCcCCHH
Confidence 45799999 889998777 56 6899999999999 552 4543 3689999999999 5889999
Q ss_pred hhCC-CCCCEEEEEee
Q psy2972 121 ELGI-ESQCEITFVKR 135 (143)
Q Consensus 121 dyGI-~~g~tl~fv~r 135 (143)
+||| ++|++|+++..
T Consensus 80 dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 80 DLKVTPANSTITVMIK 95 (98)
T ss_dssp GSCCBTTBCEEEEEEC
T ss_pred HcCcCCCCCEEEEEEe
Confidence 9999 99999999864
No 52
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=4.8e-14 Score=103.54 Aligned_cols=78 Identities=19% Similarity=0.324 Sum_probs=64.8
Q ss_pred cCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 44 HGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 44 ~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
....|+|+| .. |+.+.+.| ++++||.+||+.|++.+ |++ ..+|+|+|.|+.| +|+.+|.+|
T Consensus 29 ~~~~m~I~Vk~~-g~~~~l~v-~~~~TV~~LK~~I~~~~-------gip--------~~~QrLi~~Gk~L-~D~~tL~dy 90 (125)
T 1j8c_A 29 EPKIIKVTVKTP-KEKEEFAV-PENSSVQQFKEAISKRF-------KSQ--------TDQLVLIFAGKIL-KDQDTLIQH 90 (125)
T ss_dssp CCCCEEEEEECS-SCEEEEEE-CTTCCHHHHHHHHHHHH-------CSC--------SSSEEEEETTEEE-STTSCGGGT
T ss_pred CCCcEEEEEEeC-CeEEEEEE-CCCCcHHHHHHHHHHHH-------CcC--------cceEEEEECCEEc-CCCCCHHHc
Confidence 345799999 55 99999999 88999999999999963 432 2588999999999 578999999
Q ss_pred CCCCCCEEEEEeeeccc
Q psy2972 123 GIESQCEITFVKRLKDK 139 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~k 139 (143)
||++|++||++.+++|-
T Consensus 91 gI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 91 GIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp TCSSSEEEEEEEC----
T ss_pred CCCCCCEEEEEeccCCC
Confidence 99999999999999874
No 53
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.52 E-value=8.8e-14 Score=100.00 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=67.6
Q ss_pred cCCcEEEEEEe-----------CCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCccc
Q psy2972 44 HGQSIMCCIQA-----------DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKL 112 (143)
Q Consensus 44 ~g~am~l~Vk~-----------~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL 112 (143)
+...++|.|+. +|+.+.+.| ++++||.+||+.|+.. .|++ +.+|+|+|.|+.|
T Consensus 22 ~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v-~~~~TV~~LK~~I~~~-------~gip--------~~~QrL~~~Gk~L 85 (115)
T 1we7_A 22 NKGPVSIKVQVPNMQDKTEWKLNGQGLVFTL-PLTDQVSVIKVKIHEA-------TGMP--------AGKQKLQYEGIFI 85 (115)
T ss_dssp CCSCEEEEEEECCCSSSCSSCCSSEEEEEEE-CSCSBTHHHHHHHHHH-------SSCC--------TTTEEEEETTEEE
T ss_pred CCCCEEEEEEcCCCccccccccCCeEEEEEE-CCCCCHHHHHHHHHHH-------HCCC--------hHHEEEEECCEEC
Confidence 34578888833 467899999 8899999999999995 4543 3588999999999
Q ss_pred ccccchhhhhCCCCCCEEEEEeeecccc
Q psy2972 113 TNEKSLLSELGIESQCEITFVKRLKDKV 140 (143)
Q Consensus 113 ~~d~~tL~dyGI~~g~tl~fv~rlr~k~ 140 (143)
.|+.+|.+|||++|++||++.|+||-+
T Consensus 86 -~D~~tL~~y~i~~g~~i~lv~rl~GGk 112 (115)
T 1we7_A 86 -KDSNSLAYYNMASGAVIHLALKERSGP 112 (115)
T ss_dssp -CTTSBHHHHTCCSSCEEEEEECCCSCC
T ss_pred -CCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 578999999999999999999999853
No 54
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.9e-14 Score=100.08 Aligned_cols=72 Identities=18% Similarity=0.298 Sum_probs=61.1
Q ss_pred EEEEE-EeCCceEEEEec-CCCCcHHHHHHHH-HHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 48 IMCCI-QADNKKFDIVIS-PKNTRVSDLKRTI-ERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~-~~~aTV~dLK~aI-~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
|+|+| .++|+.+++.|. ++++||.+||+.| ++ .+|+++ .+++|+|+|+.| +|+.+|++|||
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~-------~~gip~--------~~QrLi~~Gk~L-~D~~tL~~y~I 65 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISE-------EKASHI--------SEIKLLLKGKVL-HDNLFLSDLKV 65 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHT-------TSCSSS--------TTEEEEETTEEC-CTTCBHHHHCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHH-------hcCCCh--------HHEEEEECCEEC-cCcCCHHHcCC
Confidence 89999 889998887750 4899999999999 66 356543 699999999999 58899999999
Q ss_pred -CCCCEEEEEee
Q psy2972 125 -ESQCEITFVKR 135 (143)
Q Consensus 125 -~~g~tl~fv~r 135 (143)
.+|++|++..+
T Consensus 66 ~~~~stl~v~~~ 77 (87)
T 2lxa_A 66 TPANSTITVMIK 77 (87)
T ss_dssp CGGGCEEEEEEC
T ss_pred CCCCCEEEEEcC
Confidence 69999998764
No 55
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.51 E-value=1.1e-15 Score=111.90 Aligned_cols=75 Identities=19% Similarity=0.359 Sum_probs=0.0
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ..+|+.+++.| ++++||.+||+.|++.. |++ +.+|+|+|+|+.| +|+.+|.+|||++
T Consensus 1 M~I~Vk~~~G~~~~l~v-~~~~TV~~LK~~I~~~~-------gip--------~~~QrLi~~Gk~L-~D~~tL~~~~I~~ 63 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEV-ESSDTIDNVKSKIQDKE-------GIP--------PDQQRLIFAGKQL-EDGRTLSDYNIQK 63 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEe-CCCCCHHHHHHHHHHHh-------CcC--------hHHEEEEECCEEC-CCCCchhhhccCC
Confidence 88999 88999999999 88999999999999964 332 2467999999999 5899999999999
Q ss_pred CCEEEEEeeeccc
Q psy2972 127 QCEITFVKRLKDK 139 (143)
Q Consensus 127 g~tl~fv~rlr~k 139 (143)
|++||++.+++|-
T Consensus 64 gsti~l~~rl~GG 76 (128)
T 3u5e_m 64 ESTLHLVLRLRGG 76 (128)
T ss_dssp -------------
T ss_pred CCEEEEEEEcCCC
Confidence 9999999999974
No 56
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.51 E-value=6.7e-14 Score=106.06 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=68.7
Q ss_pred ccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhh
Q psy2972 43 LHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSE 121 (143)
Q Consensus 43 ~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~d 121 (143)
+....|+|+| ..+|+.+.+.| .+++||.+||+.|+... |++. .+|+|+|+|+.| +|+.+|.+
T Consensus 16 ~~~~~m~i~Vk~~~g~~~~l~v-~~~~tV~~lK~~I~~~~-------gip~--------~~QrL~~~g~~L-~d~~tL~~ 78 (172)
T 3u30_A 16 PRGSHMQIFVKTLTGKTITLEV-EPSDTIENVKAKIQDKE-------GIPP--------DQQRLIFAGKQL-EDGRTLSD 78 (172)
T ss_dssp ---CCEEEEEEETTTEEEEEEE-CTTCBHHHHHHHHHHHH-------CCCG--------GGEEEEETTEEC-CTTCBTGG
T ss_pred CCCCcEEEEEEeCCCCEEEEEE-CCCCcHHHHHHHHHHHH-------CcCh--------HHEEEEECCccc-cccCCHhH
Confidence 3445799999 79999999999 89999999999999964 4332 578999999999 58899999
Q ss_pred hCCCCCCEEEEEeeeccc
Q psy2972 122 LGIESQCEITFVKRLKDK 139 (143)
Q Consensus 122 yGI~~g~tl~fv~rlr~k 139 (143)
|||++|++||++.+++|.
T Consensus 79 ~~i~~~~~l~l~~~~~gg 96 (172)
T 3u30_A 79 YNIQKESTLHLVLRLRGG 96 (172)
T ss_dssp GTCCTTCEEEEEECCCCC
T ss_pred cCCcccceeeeeeccccc
Confidence 999999999999999875
No 57
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=7.1e-14 Score=102.26 Aligned_cols=85 Identities=16% Similarity=0.145 Sum_probs=67.9
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHh-hcccccccccccccceEEEeeCCcccccccchhhhhC
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMK-RKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELG 123 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~-reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyG 123 (143)
..|.|+| +++|+.+++.| ++++||.+||+.|++.+. .. +||++. + +.+++|||+|+.| +|+.||.+||
T Consensus 15 ~~m~I~vKtl~G~t~~lev-~~s~TV~~lK~kI~~~~p--~dwke~~p~--p----~~qqrLIy~GK~L-eD~~TL~~y~ 84 (116)
T 1wgh_A 15 DMINLRLILVSGKTKEFLF-SPNDSASDIAKHVYDNWP--MDWEEEQVS--S----PNILRLIYQGRFL-HGNVTLGALK 84 (116)
T ss_dssp SSEEEEEECSSSCEEEEEE-CTTCBHHHHHHHHHHSSS--CCSSCCCCC--C----TTTEEEEETTEEE-CSSCBTTTTT
T ss_pred CeEEEEEEeCCCCEEEEEE-CCcCHHHHHHHHHHHhcc--cccccCCCC--C----hHHEEEEECCcCC-CCCCcHHHcC
Confidence 4699999 78999999999 999999999999998421 00 234320 1 4699999999999 5889999999
Q ss_pred CCCC--CEEEEEeeecccc
Q psy2972 124 IESQ--CEITFVKRLKDKV 140 (143)
Q Consensus 124 I~~g--~tl~fv~rlr~k~ 140 (143)
|..| .+||++.|+.+..
T Consensus 85 I~~~~~~tlhLvlr~~~~~ 103 (116)
T 1wgh_A 85 LPFGKTTVMHLVARETLPE 103 (116)
T ss_dssp CCSSCEEEEEEEECSSCSS
T ss_pred CCCCCceEEEEEccCCCCC
Confidence 9877 5789999887653
No 58
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=4.4e-14 Score=99.99 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=65.9
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
..|+|+| ..+|+ +.+.| ..++||.+||+.|++.. |++ ..+++|+|.|+.| +|+.+|.+|||
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v-~~~~TV~~LK~~I~~~~-------gip--------~~~qrLi~~Gk~L-~D~~tL~~~gi 77 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSV-TDTCTIQQLKEEISQRF-------KAH--------PDQLVLIFAGKIL-KDPDSLAQCGV 77 (106)
T ss_dssp SEEEEEEECSSCE-EEEEE-ETTCCHHHHHHHHHHHH-------TCC--------TTTEEEEETTEEC-CTTSCHHHHTC
T ss_pred ceEEEEEEeCCCc-EEEEE-CCCCcHHHHHHHHHHHH-------CcC--------hhhEEEEECCEEC-CCcCcHHHcCC
Confidence 4699999 66665 79999 88899999999999964 332 2578999999999 57899999999
Q ss_pred CCCCEEEEEeeecccc
Q psy2972 125 ESQCEITFVKRLKDKV 140 (143)
Q Consensus 125 ~~g~tl~fv~rlr~k~ 140 (143)
++|++||++.+++|..
T Consensus 78 ~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 78 RDGLTVHLVIKRQHRA 93 (106)
T ss_dssp CTTEEEEEEECCCCCS
T ss_pred CCCCEEEEEEcCCCCC
Confidence 9999999999998863
No 59
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.49 E-value=4.1e-14 Score=100.54 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=61.6
Q ss_pred CcEEEEE-EeCCc--eEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 46 QSIMCCI-QADNK--KFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 46 ~am~l~V-k~~g~--~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
..|+|+| ..+|+ .++|.| ++++||.+||+.|++++ +|+++ ..+|+|+|+|+.|. |+.+|.+|
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v-~~~~TV~~LK~~I~~~~------~g~pp-------~~~QrLIy~Gk~L~-D~~tL~~y 86 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISC-FLNWTVGKLKTHLSNVY------PSKPL-------TKDQRLVYSGRLLP-DHLQLKDI 86 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEE-CTTSBHHHHHHHHHHHS------TTCCC-------TTTCCEEETTEEEC-TTSBTHHH
T ss_pred CeEEEEEEcCCCCEEEEEEEc-CCCCHHHHHHHHHHHHh------cCCCC-------hhhEEEEECCEECC-CCCCHHHH
Confidence 4599999 66777 579999 89999999999999963 34422 36899999999995 88999999
Q ss_pred --CCCCCCEEEEE
Q psy2972 123 --GIESQCEITFV 133 (143)
Q Consensus 123 --GI~~g~tl~fv 133 (143)
||++|++||+|
T Consensus 87 ~~~I~~~~tihLv 99 (99)
T 2kdb_A 87 LRKQDEYHMVHLV 99 (99)
T ss_dssp HTTTCSEEEEEEC
T ss_pred hcCCCCCCEEEeC
Confidence 99999999986
No 60
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.48 E-value=4.7e-14 Score=97.61 Aligned_cols=75 Identities=19% Similarity=0.149 Sum_probs=65.0
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
..|+|+| ..+|+.+.+.| ++++||.+||+.|++.. +.+++|+|.|+.|.+++.+|.+|||
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v-~~~~TV~~LK~~i~~~~------------------~~~qrLi~~Gk~L~D~~~tL~~y~i 66 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVA-RPEDTVGTLKSKYFPGQ------------------ESQMKLIYQGRLLQDPARTLSSLNI 66 (95)
T ss_dssp CSEEEEEEETTTEEEEEEE-CSSSBHHHHHHHHSSST------------------TTTCEEEETTEECCCSSCBTTTTTC
T ss_pred CeEEEEEEeCCCCEEEEEE-CCCCcHHHHHHHHHhhC------------------cCcEEEEECCEEccCCcCCHHHcCC
Confidence 4699999 78899999999 89999999999998842 3578999999999644499999999
Q ss_pred CCCCEEEEEeeeccc
Q psy2972 125 ESQCEITFVKRLKDK 139 (143)
Q Consensus 125 ~~g~tl~fv~rlr~k 139 (143)
++|++||++.+..+.
T Consensus 67 ~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 67 TNNCVIHCHRSPPGA 81 (95)
T ss_dssp CTTEEEEEECCCCCC
T ss_pred CCCCEEEEEECCCCC
Confidence 999999999876543
No 61
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.48 E-value=1e-13 Score=102.09 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=64.0
Q ss_pred EEEEE--EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCC
Q psy2972 48 IMCCI--QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIE 125 (143)
Q Consensus 48 m~l~V--k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~ 125 (143)
|-+++ +.....+.+.| .+++||.+||+.|+.+ +|+++ .+++|+|+|+.| +|++||.+|||+
T Consensus 1 m~vFl~Ikr~ktTI~ldv-e~sdTV~~lK~kI~~~-------~giPp--------~qQrLI~~Gk~L-eD~kTL~dy~I~ 63 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDA-KESSTVFELKRIVEGI-------LKRPP--------DEQRLYKDDQLL-DDGKTLGECGFT 63 (118)
T ss_dssp CEEEEEEEEBTEEEEEEE-ETTSBHHHHHHHHHHH-------HCCCG--------GGEEEEETTEEC-CTTSBTTTTTCC
T ss_pred CceEEEEecCCEEEEEEc-CCCChHHHHHHHHHHH-------HCCCH--------HHeEEEeCCeEC-CCcCCHHHcCCC
Confidence 45566 77777899999 8999999999999996 56543 689999999999 689999999999
Q ss_pred C-------CCEEEEEeeecc
Q psy2972 126 S-------QCEITFVKRLKD 138 (143)
Q Consensus 126 ~-------g~tl~fv~rlr~ 138 (143)
+ +++||++.|..|
T Consensus 64 ~~ta~~q~~atl~Lvlr~~~ 83 (118)
T 4ajy_B 64 SQTARPQAPATVGLAFRADD 83 (118)
T ss_dssp GGGSBTTBCEEEEEEECCSS
T ss_pred cCcccCCCCCEEEEEEecCC
Confidence 9 999999999754
No 62
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.48 E-value=2.2e-13 Score=93.74 Aligned_cols=74 Identities=26% Similarity=0.464 Sum_probs=62.5
Q ss_pred CcEEEEEEeCCceEEEEecCCC-----CcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhh
Q psy2972 46 QSIMCCIQADNKKFDIVISPKN-----TRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLS 120 (143)
Q Consensus 46 ~am~l~Vk~~g~~~~V~V~~~~-----aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~ 120 (143)
..|+|+|+..|+.++|.| +++ +||.+||++|++.. |++ +.+++|+|.|+.|.+|+.+|.
T Consensus 6 ~~~~v~Vk~~~~~~~i~v-~~~~~~~~~TV~~LK~~i~~~~-------gip--------~~~qrL~~~Gk~L~D~~~~L~ 69 (92)
T 1wxv_A 6 SGLTVTVTHSNEKHDLHV-TSQQGSSEPVVQDLAQVVEEVI-------GVP--------QSFQKLIFKGKSLKEMETPLS 69 (92)
T ss_dssp SSEEEEEECSSSEEEEEE-CCCSSSSSCBHHHHHHHHHHHT-------CCC--------TTTCEEEETTEEECCSSSBHH
T ss_pred CeEEEEEEECCEEEEEEE-CCCcCcccCcHHHHHHHHHHHH-------CcC--------HHHEEEEECCeecCCCcccHH
Confidence 369999966799999999 664 99999999999963 433 257899999999976577999
Q ss_pred hhCCCCCCEEEEEee
Q psy2972 121 ELGIESQCEITFVKR 135 (143)
Q Consensus 121 dyGI~~g~tl~fv~r 135 (143)
+|||++|++||++.+
T Consensus 70 ~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 70 ALGIQDGCRVMLIGK 84 (92)
T ss_dssp HHTCCSSEEEEEESC
T ss_pred HCCCCCCCEEEEEec
Confidence 999999999999864
No 63
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=9.1e-14 Score=102.41 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=62.9
Q ss_pred CcEEEEEE-e-CCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhC
Q psy2972 46 QSIMCCIQ-A-DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELG 123 (143)
Q Consensus 46 ~am~l~Vk-~-~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyG 123 (143)
..|+|+|+ . +++.+.+.+ ++++||.+||++++..+. +|. .++||+|+|+.| .|+.||.+||
T Consensus 14 ~~itvkv~l~~~~~k~tv~v-~~d~TV~dLKe~ls~~~~-------iP~--------e~qrLIy~GKiL-KD~eTL~~~g 76 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPF-KVDTILKYLKDHFSHLLG-------IPH--------SVLQIRYSGKIL-KNNETLVQHG 76 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEE-CSSSCSHHHHHHHHHHHT-------CCT--------TTEEEEETTEEE-CSSCCHHHHS
T ss_pred ccEEEEEEEcCCCcEEEEEe-CCCCcHHHHHHHHHhhhC-------CCh--------HHEEEEECCeEc-CCcchHHHcC
Confidence 35788873 3 478899999 999999999999999763 332 478999999999 5899999999
Q ss_pred CCCCCEEEEEeee
Q psy2972 124 IESQCEITFVKRL 136 (143)
Q Consensus 124 I~~g~tl~fv~rl 136 (143)
|++|.+||++++=
T Consensus 77 Ik~g~TIhLvi~s 89 (118)
T 2daf_A 77 VKPQEIVQVEIFS 89 (118)
T ss_dssp CCSSCEEEEEEEE
T ss_pred CCCCCEEEEEEec
Confidence 9999999999864
No 64
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.46 E-value=2.4e-13 Score=101.27 Aligned_cols=75 Identities=19% Similarity=0.343 Sum_probs=65.1
Q ss_pred cEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEe-e-CCcccccccchhhhhC
Q psy2972 47 SIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLS-F-DGIKLTNEKSLLSELG 123 (143)
Q Consensus 47 am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Li-f-~gkkL~~d~~tL~dyG 123 (143)
+|+|+| .++|+.+++.| ++++||.+||+.|++.+ |+++ .+|+|+ | +|+.| +|+.+|++||
T Consensus 2 ~m~i~vk~~~g~~~~l~v-~~~~tV~~lK~~I~~~~-------gip~--------~~QrL~~~~~g~~L-~d~~tL~~y~ 64 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSL-SSSMSVSELKAQITQKI-------GVHA--------FQQRLAVHPSGVAL-QDRVPLASQG 64 (159)
T ss_dssp -CEEEEEETTSCEEEEEC-CTTCCHHHHHHHHHHHH-------CCCG--------GGEEEEEETTCCBC-CTTSCGGGGT
T ss_pred ceEEEEEECCCCEEEEEe-CCCCcHHHHHHHHHHHh-------CCCH--------HHEEEEEcCCCCCC-CCCCCHHHcC
Confidence 489999 79999999999 99999999999999974 4332 477999 9 79999 6899999999
Q ss_pred CCCCCEEEEEee-ecc
Q psy2972 124 IESQCEITFVKR-LKD 138 (143)
Q Consensus 124 I~~g~tl~fv~r-lr~ 138 (143)
|++|++||++.+ +++
T Consensus 65 i~~~~~l~l~~~~~~~ 80 (159)
T 3rt3_B 65 LGPGSTVLLVVDKSDE 80 (159)
T ss_dssp CCTTCEEEEEECCCCC
T ss_pred CCCCCEEEEEccCCCC
Confidence 999999999998 444
No 65
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.46 E-value=2.6e-13 Score=99.85 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=61.3
Q ss_pred EEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCC--
Q psy2972 48 IMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIE-- 125 (143)
Q Consensus 48 m~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~-- 125 (143)
|.|+|+...+.+.+.| .+++||.+||+.|+.+ +|+++ .+++|+|+|+.| +|+.||.+|||+
T Consensus 3 mfl~ir~~ktti~lev-~~sdTV~~lK~kI~~~-------egIP~--------~qQrLi~~Gk~L-eD~~TLsdy~I~~~ 65 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDA-KESSTVFELKRIVEGI-------LKRPP--------EEQRLYKDDQLL-DDGKTLGECGFTSQ 65 (118)
T ss_dssp EEEEEEEBTEEEEEEE-ETTSBHHHHHHHHHHH-------HCCCG--------GGEEEEETTEEC-CTTSBHHHHTCCTT
T ss_pred EEEEEecCCEEEEEEe-CCcChHHHHHHHHHHH-------hCCCH--------HHeEEEECCeEC-CCCCCHHHcCcccc
Confidence 5555544456799999 8899999999999996 66544 699999999999 689999999999
Q ss_pred -----CCCEEEEEeee
Q psy2972 126 -----SQCEITFVKRL 136 (143)
Q Consensus 126 -----~g~tl~fv~rl 136 (143)
++++||++.|.
T Consensus 66 ~a~~q~~stL~L~lr~ 81 (118)
T 2fnj_B 66 TARPQAPATVGLAFRA 81 (118)
T ss_dssp TSBTTBCEEEEEEEBS
T ss_pred cccCCCCCEEEEEecC
Confidence 79999999983
No 66
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.46 E-value=1.7e-13 Score=100.20 Aligned_cols=75 Identities=19% Similarity=0.353 Sum_probs=66.2
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ..+|+.+++.| ++++||.+||++|++.+ |.+ +.+++|+|.|+.| +|+.+|.+|||++
T Consensus 1 M~i~vk~~~g~~~~~~v-~~~~tv~~lK~~i~~~~-------gip--------~~~q~L~~~g~~L-~d~~tL~~~~i~~ 63 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEV-EPSDTIENVKAKIQDKE-------GIP--------PDQQRLIFAGKQL-EDGRTLSDYNIQK 63 (152)
T ss_dssp CEEEEEETTSCEEEEEC-CTTCBHHHHHHHHHHHH-------CCC--------GGGEEEEETTEEC-CTTSBTGGGTCCT
T ss_pred CEEEEEeCCCCEEEEEE-CCCCCHHHHHHHHHHHH-------CcC--------hHHeEEEECCeEC-cCcccHHHhccCC
Confidence 89999 78899999999 89999999999999974 432 3578999999999 5889999999999
Q ss_pred CCEEEEEeeeccc
Q psy2972 127 QCEITFVKRLKDK 139 (143)
Q Consensus 127 g~tl~fv~rlr~k 139 (143)
|++||++.+.++.
T Consensus 64 ~~~l~l~~~~~~~ 76 (152)
T 3b08_A 64 ESTLHLVLRLRGG 76 (152)
T ss_dssp TCEEEEEECCTTC
T ss_pred CCeeEEEeecccc
Confidence 9999999988764
No 67
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.45 E-value=5.8e-15 Score=112.29 Aligned_cols=75 Identities=19% Similarity=0.379 Sum_probs=0.0
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| .++|+.+++.| ++++||.+||+.|++.. |+++ .+|+|+|+|+.| +|+.+|.+|||++
T Consensus 1 MqI~VK~l~G~~~~l~V-~~~~TV~~LK~~I~~~~-------gip~--------~~QrLi~~Gk~L-~D~~tL~dygI~~ 63 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEV-ESSDTIDNVKSKIQDKE-------GIPP--------DQQRLIFAGKQL-EDGRTLSDYNIQK 63 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEE-CCCCCHHHHHHHHHHHh-------CCCH--------HHEEEEECCEEc-cccCcHHHcCCCC
Confidence 88999 88899999999 88999999999999964 3322 477999999999 5889999999999
Q ss_pred CCEEEEEeeeccc
Q psy2972 127 QCEITFVKRLKDK 139 (143)
Q Consensus 127 g~tl~fv~rlr~k 139 (143)
|++||++.|++|-
T Consensus 64 gstL~Lvlrl~GG 76 (152)
T 3u5c_f 64 ESTLHLVLRLRGG 76 (152)
T ss_dssp -------------
T ss_pred CCEEEEEeeccCC
Confidence 9999999999984
No 68
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.45 E-value=3.1e-14 Score=100.75 Aligned_cols=76 Identities=17% Similarity=0.316 Sum_probs=60.9
Q ss_pred ccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 43 LHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 43 ~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
+.+-.|+|+|+.+|+.+.+.| ++++||.+||+.|++.. |++. .+|+|+|+|+.| +|+.+|++|
T Consensus 24 ~~~m~i~I~Vk~~g~~~~l~v-~~~~TV~~LK~~I~~~~-------gip~--------~~QrLi~~Gk~L-~D~~tL~~~ 86 (101)
T 3m63_B 24 QGAMSLNIHIKSGQDKWEVNV-APESTVLQFKEAINKAN-------GIPV--------ANQRLIYSGKIL-KDDQTVESY 86 (101)
T ss_dssp -----CCEEEECSSCCCCBCC-CTTSBHHHHHHHHHHHH-------SCCS--------TTCCEEETTEEC-CTTSBTTTT
T ss_pred cCCcEEEEEEEECCEEEEEEe-CCCCCHHHHHHHHHHHH-------CcCh--------HHEEEEECCEEC-CCcCcHHHC
Confidence 344456677755899999999 89999999999999964 4332 467999999999 579999999
Q ss_pred CCCCCCEEEEEee
Q psy2972 123 GIESQCEITFVKR 135 (143)
Q Consensus 123 GI~~g~tl~fv~r 135 (143)
||++|++|+++.+
T Consensus 87 gI~~g~tI~lv~~ 99 (101)
T 3m63_B 87 HIQDGHSVHLVKS 99 (101)
T ss_dssp TCCTTEEEEECCC
T ss_pred CCCCCCEEEEEeC
Confidence 9999999999864
No 69
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.43 E-value=1.8e-13 Score=94.50 Aligned_cols=72 Identities=14% Similarity=0.264 Sum_probs=62.7
Q ss_pred CcEEEEEEeCCceEEE-EecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEe---eCCcccccccchhhh
Q psy2972 46 QSIMCCIQADNKKFDI-VISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLS---FDGIKLTNEKSLLSE 121 (143)
Q Consensus 46 ~am~l~Vk~~g~~~~V-~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Li---f~gkkL~~d~~tL~d 121 (143)
..|+|+|+..|+.++| .| ++++||.+||++|++.. |+++ .+|+|+ |.|+.| +|+.+|.+
T Consensus 6 ~~m~i~Vk~~g~~~~i~~v-~~~~TV~~lK~~I~~~~-------gip~--------~~QkLi~~k~~Gk~L-~D~~~L~~ 68 (90)
T 1v5t_A 6 SGLPIIVKWGGQEYSVTTL-SEDDTVLDLKQFLKTLT-------GVLP--------ERQKLLGLKVKGKPA-ENDVKLGA 68 (90)
T ss_dssp CSCCEEEEETTEEEEECSC-CSSSBHHHHHHHHHHHT-------CCCT--------TTCEEESCEETTEEC-CTTSBHHH
T ss_pred ceEEEEEEECCEEEEEEEe-CCCCCHHHHHHHHHHHH-------CcCH--------HHeEEEeeccCCcCc-CCCCCHHH
Confidence 4699999778999999 99 88999999999999964 4432 577999 999998 57899999
Q ss_pred hCCCCCCEEEEEe
Q psy2972 122 LGIESQCEITFVK 134 (143)
Q Consensus 122 yGI~~g~tl~fv~ 134 (143)
|||++|++||++.
T Consensus 69 ~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 69 LKLKPNTKIMMMG 81 (90)
T ss_dssp HTCCTTEEEEEEC
T ss_pred cCCCCCCEEEEEe
Confidence 9999999999974
No 70
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2.6e-13 Score=94.13 Aligned_cols=71 Identities=14% Similarity=0.216 Sum_probs=58.9
Q ss_pred cEEEEE-EeCCceE--EE-EecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeC--Ccccccccchhh
Q psy2972 47 SIMCCI-QADNKKF--DI-VISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFD--GIKLTNEKSLLS 120 (143)
Q Consensus 47 am~l~V-k~~g~~~--~V-~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~--gkkL~~d~~tL~ 120 (143)
.|+|+| .+.|+.+ .| .| ++++||.+||++|++.. +|++ +.+++|+|. |+.| +|+.+|+
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v-~~~~TV~~lK~~I~~~~------~~i~--------~~~QrL~~~~~Gk~L-~D~~tL~ 73 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKV-EPHATIAEIKNLFTKTH------PQWY--------PARQSLRLDPKGKSL-KDEDVLQ 73 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEE-CSSCBHHHHHHHHHHHC------SSSC--------TTTCCEESSTTSCCC-CTTCBTT
T ss_pred EEEEEEECCCCCEEeeEEeEc-CCCCcHHHHHHHHHHHh------cCCC--------hHHeEEEecCCCcCc-CCCCCHH
Confidence 399999 8887775 58 89 89999999999999952 3432 357788876 8899 5889999
Q ss_pred hhCCCCCCEEEEE
Q psy2972 121 ELGIESQCEITFV 133 (143)
Q Consensus 121 dyGI~~g~tl~fv 133 (143)
+|||++|++|||+
T Consensus 74 ~y~i~~~stl~~K 86 (88)
T 2dzj_A 74 KLPVGTTATLYFR 86 (88)
T ss_dssp TSSCCSEEEEEEC
T ss_pred HcCCCCCCEEEEE
Confidence 9999999999986
No 71
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=3.5e-13 Score=94.53 Aligned_cols=72 Identities=8% Similarity=0.130 Sum_probs=61.6
Q ss_pred CcEEEEEEeCCceE-EEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 46 QSIMCCIQADNKKF-DIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 46 ~am~l~Vk~~g~~~-~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
..|+|+|+..|+.+ +|.| ++++||.+||+.|++.. |++. .+|+|+|.|+.|. |+ +|.+|||
T Consensus 6 ~~m~i~Vk~~g~~~~~l~v-~~~~TV~~lK~~I~~~t-------gip~--------~~QkLi~~Gk~L~-D~-tL~~~~I 67 (96)
T 1wgg_A 6 SGYSVTVKWGKEKFEGVEL-NTDEPPMVFKAQLFALT-------GVQP--------ARQKVMVKGGTLK-DD-DWGNIKM 67 (96)
T ss_dssp CEEEEEEEETTEEEEEEEE-ESSSCHHHHHHHHHHHT-------CCCT--------TTSCCEETTEECC-SS-CCCSCCC
T ss_pred cEEEEEEEECCEEEEEEEE-CCCCcHHHHHHHHHHHH-------CcCH--------HHeEEEECCcCCC-CC-CHHHCCC
Confidence 46999998789999 6999 88999999999999964 4432 5778999999995 56 9999999
Q ss_pred CCCCEEEEEee
Q psy2972 125 ESQCEITFVKR 135 (143)
Q Consensus 125 ~~g~tl~fv~r 135 (143)
++|++||++..
T Consensus 68 ~~g~~i~l~~~ 78 (96)
T 1wgg_A 68 KNGMTVLMMGS 78 (96)
T ss_dssp CSSCEEECCCC
T ss_pred CCCCEEEEEec
Confidence 99999998753
No 72
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.41 E-value=1.3e-12 Score=94.28 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=59.5
Q ss_pred cEEEEE-EeCC--ceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhC
Q psy2972 47 SIMCCI-QADN--KKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELG 123 (143)
Q Consensus 47 am~l~V-k~~g--~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyG 123 (143)
.|+|+| ...+ ..+++.| .+++||.+||+.|++++ |+++ .+++++|+|+.+ +|+.||.+||
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V-~ps~TV~~LK~~I~~k~-------Gipp--------~~QRli~ggkll-~D~~TL~~yg 86 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTV-RPDMTVASLKDMVFLDY-------GFPP--------VLQQWVIGQRLA-RDQETLHSHG 86 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEE-CTTCBHHHHHHHHHHHH-------CCCG--------GGEEEEETTEEE-CTTCBTGGGT
T ss_pred EEEEEEEccCCCCceEEEEE-CCcChHHHHHHHHHHHh-------CCCH--------HHEEEeccCeEc-cCcCcHHHcC
Confidence 588888 6664 6799999 99999999999999975 4433 467899988744 7899999999
Q ss_pred C-CCCCEEEEEe
Q psy2972 124 I-ESQCEITFVK 134 (143)
Q Consensus 124 I-~~g~tl~fv~ 134 (143)
| ++|+++|++.
T Consensus 87 I~~~G~t~hL~l 98 (105)
T 4dbg_A 87 VRQNGDSAYLYL 98 (105)
T ss_dssp CCSTTCEEEEEE
T ss_pred CCCCCCEEEEEE
Confidence 9 5999999986
No 73
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.41 E-value=8.3e-13 Score=90.38 Aligned_cols=70 Identities=20% Similarity=0.288 Sum_probs=59.8
Q ss_pred EEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCC
Q psy2972 48 IMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQ 127 (143)
Q Consensus 48 m~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g 127 (143)
+.+.++.+|+.+.+.| ++++||.+||+.|++.. |+++ .+++|+|+|+.| +|+.+|.+|||++|
T Consensus 13 ~~~~~~~~g~~~~l~v-~~~~TV~~LK~~I~~~~-------gip~--------~~qrL~~~Gk~L-~D~~tL~~~gi~~g 75 (85)
T 2kd0_A 13 IKLTVKFGGKSIPLSV-SPDCTVKDLKSQLQPIT-------NVLP--------RGQKLIFKGKVL-VETSTLKQSDVGSG 75 (85)
T ss_dssp EEEEEEETTEEEEEEE-CTTSBHHHHHHHHHHHH-------CCCT--------TTCEEEETTEEC-CTTCBTTTTTCCTT
T ss_pred EEEEEEECCEEEEEEE-CCCCcHHHHHHHHHHHH-------CcCh--------HHEEEEECCeEC-CCcCCHHHCCCCCC
Confidence 4444499999999999 88999999999999964 4332 577999999999 57899999999999
Q ss_pred CEEEEEe
Q psy2972 128 CEITFVK 134 (143)
Q Consensus 128 ~tl~fv~ 134 (143)
++|+++.
T Consensus 76 ~~l~l~~ 82 (85)
T 2kd0_A 76 AKLMLMA 82 (85)
T ss_dssp EEEEEEC
T ss_pred CEEEEEE
Confidence 9999874
No 74
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=4.3e-13 Score=93.66 Aligned_cols=71 Identities=24% Similarity=0.337 Sum_probs=60.8
Q ss_pred CcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCC
Q psy2972 46 QSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIE 125 (143)
Q Consensus 46 ~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~ 125 (143)
..|+|+|+..|+.++|.| ++++||.+||+.|++.. |+++ .+|+|+|.|+.| +|. +|.+|||+
T Consensus 16 ~~~~i~Vk~~g~~~~i~v-~~~~TV~~LK~~I~~~t-------gip~--------~~QrL~~~Gk~L-dd~-tL~~~~i~ 77 (95)
T 1v86_A 16 ELVDLKIIWNKTKHDVKV-PLDSTGSELKQKIHSIT-------GLPP--------AMQKVMYKGLVP-EDK-TLREIKVT 77 (95)
T ss_dssp CCEEEEEEETTEEEEEEE-CTTSBHHHHHHHHHHHH-------CSCS--------TTCCCBSSSBCC-SSS-BHHHHCCC
T ss_pred ceEEEEEEECCEEEEEEE-CCCCcHHHHHHHHHHHH-------CcCH--------HHeEEEECCeeC-CcC-cHHHCCCC
Confidence 358888888899999999 89999999999999974 4322 477899999999 454 99999999
Q ss_pred CCCEEEEEe
Q psy2972 126 SQCEITFVK 134 (143)
Q Consensus 126 ~g~tl~fv~ 134 (143)
+|++||++.
T Consensus 78 ~g~~i~lv~ 86 (95)
T 1v86_A 78 SGAKIMVVG 86 (95)
T ss_dssp TTEEEEECC
T ss_pred CCCEEEEEe
Confidence 999999975
No 75
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.40 E-value=7.2e-13 Score=94.22 Aligned_cols=76 Identities=20% Similarity=0.278 Sum_probs=62.3
Q ss_pred cEEEEE-EeCC---ceEEEEecCC---------CCcHHHHHHHHHHHHhHhHhhcccccccccccccce-EEEeeCCccc
Q psy2972 47 SIMCCI-QADN---KKFDIVISPK---------NTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKS-YWLSFDGIKL 112 (143)
Q Consensus 47 am~l~V-k~~g---~~~~V~V~~~---------~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~-~~Lif~gkkL 112 (143)
.|+|+| ..++ +.++|.| ++ ++||.+||+.|++.. ++|++. .+ ++|+|.|+.|
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v-~~~~~~~v~~~~~TV~~LK~~i~~~~-----~~gip~--------~~~qrLi~~Gk~L 77 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQL-PETELGEYSLGGYSISFLKQLIAGKL-----QESVPD--------PELIDLIYCGRKL 77 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECC-CCCSSCSSCCCCCBHHHHHHHHHHHC-----TTTCCC--------SSSEEEEETTEEC
T ss_pred ceEEEEEeCCCCCccEEEEEe-cCccccccCcccCCHHHHHHHHHHHh-----ccCCCh--------hhcEEEEECCeEC
Confidence 489999 6667 6899996 44 599999999999962 115432 57 8999999999
Q ss_pred ccccchhhhhCCCCCCEEEEEeeec
Q psy2972 113 TNEKSLLSELGIESQCEITFVKRLK 137 (143)
Q Consensus 113 ~~d~~tL~dyGI~~g~tl~fv~rlr 137 (143)
+|+.+|.+|||++|++||++.+..
T Consensus 78 -~D~~tL~~y~i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 78 -KDDQTLDFYGIQPGSTVHVLRKSW 101 (107)
T ss_dssp -CTTCBHHHHTCCTTCEEEEEESSC
T ss_pred -CCCCcHHHcCCCCCCEEEEEeCCC
Confidence 578999999999999999998764
No 76
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.35 E-value=1.8e-12 Score=108.44 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=65.7
Q ss_pred ccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhh
Q psy2972 43 LHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSE 121 (143)
Q Consensus 43 ~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~d 121 (143)
.....|+|+| .++|+.+.+.| ++++||.+||+.|++.. |++. .+|+|+|.|+.| +|+.+|++
T Consensus 229 ~~~~~MqI~VKtl~Gk~~~leV-~~s~TV~dLK~kI~~~~-------GIp~--------~~QRLi~~Gk~L-~D~~TLsd 291 (307)
T 3ai5_A 229 GITGSMQIFVKTLTGKTITLEV-EPSDTIENVKAKIQDKE-------GIPP--------DQQRLIFAGKQL-EDGRTLSD 291 (307)
T ss_dssp SSCCCEEEEEECTTSCEEEEEE-CTTCBHHHHHHHHHHHH-------CCCG--------GGCEEEETTEEC-CTTSBTGG
T ss_pred CCCCeEEEEEEeCCCCEEEEEE-CCCCcHHHHHHHHHHHH-------CcCh--------HHEEEEeCCeec-CCCCCHHH
Confidence 3456899999 77899999999 88999999999999963 4432 577999999999 58899999
Q ss_pred hCCCCCCEEEEEeeec
Q psy2972 122 LGIESQCEITFVKRLK 137 (143)
Q Consensus 122 yGI~~g~tl~fv~rlr 137 (143)
|||++|++||++.|||
T Consensus 292 ygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 292 YNIQKESTLHLVLRLR 307 (307)
T ss_dssp GTCCTTCEEEEEC---
T ss_pred cCCCCCCEEEEEEeCC
Confidence 9999999999999986
No 77
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.35 E-value=2.9e-12 Score=90.10 Aligned_cols=79 Identities=22% Similarity=0.316 Sum_probs=68.8
Q ss_pred cCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 44 HGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 44 ~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
.+..|+|+| ..+|+.+.+.| .++.++..|++++.++ +|+++ .+++++|+|++| +++.|.++|
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v-~~~t~l~kl~~~y~~~-------~gi~~--------~~~rf~FdG~~l-~~~~Tp~dl 66 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKI-KRHTPLSKLMKAYCER-------QGLSM--------RQIRFRFDGQPI-NETDTPAQL 66 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEE-ETTSCTHHHHHHHHHH-------HTCCG--------GGEEEEETTEEC-CTTCCTTTT
T ss_pred CCCeEEEEEECCCCCEEEEEE-CCCCHHHHHHHHHHHH-------hCCCc--------ccEEEEECCEEc-CCCCCHHHc
Confidence 356799999 78899999999 9999999999999885 55433 689999999999 578999999
Q ss_pred CCCCCCEEEEEeeeccc
Q psy2972 123 GIESQCEITFVKRLKDK 139 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~k 139 (143)
+|++||+|+++.++||-
T Consensus 67 ~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 67 EMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp TCCTTCEEEEEECCEES
T ss_pred CCCCCCEEEEEEeccCC
Confidence 99999999999999985
No 78
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.33 E-value=6.9e-12 Score=88.27 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=59.8
Q ss_pred cEEEEEEeC-C--ceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeC--Cc---ccccccch
Q psy2972 47 SIMCCIQAD-N--KKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFD--GI---KLTNEKSL 118 (143)
Q Consensus 47 am~l~Vk~~-g--~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~--gk---kL~~d~~t 118 (143)
.++|+|+.+ + ..+++.| +++.||.+||+.|+.+ +|+|+ .+++|+|. |+ .|.+|+.+
T Consensus 15 ~v~l~It~s~~~~~~~~~~v-~~~~TV~~LK~kI~~~-------~GiP~--------~~QrL~~~~~g~~~~~L~~D~~t 78 (95)
T 2kjr_A 15 FIKVNVSNSHNDAVAFEVKL-AKDLTVAQLKTKLEIL-------TGGCA--------GTMKVQVFKGDTCVSTMDNNDAQ 78 (95)
T ss_dssp EEEEEEEESSCSCEEEEEEE-ETTCBHHHHHHHHHHH-------HCSCT--------TTEEEEEEETTEEEEECCCTTSB
T ss_pred eEEEEEEECCCCceEEEEEe-CccCHHHHHHHHHHHH-------HCcCH--------HHeEEEEecCCcccceeCCCCCC
Confidence 477778433 3 3799999 8899999999999996 56654 68999997 45 56678999
Q ss_pred hhhhCCCCCCEEEEEe
Q psy2972 119 LSELGIESQCEITFVK 134 (143)
Q Consensus 119 L~dyGI~~g~tl~fv~ 134 (143)
|.+|||++|++||++.
T Consensus 79 L~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 79 LGYYANSDGLRLHVVD 94 (95)
T ss_dssp HHHHCCSSSCEEEEEE
T ss_pred HhHCCcCCCCEEEEEC
Confidence 9999999999999985
No 79
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.31 E-value=1.1e-11 Score=87.71 Aligned_cols=72 Identities=17% Similarity=0.120 Sum_probs=60.0
Q ss_pred cEEEEEEeC-C--ceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCc---c---cccccc
Q psy2972 47 SIMCCIQAD-N--KKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGI---K---LTNEKS 117 (143)
Q Consensus 47 am~l~Vk~~-g--~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gk---k---L~~d~~ 117 (143)
.++|.|+.+ . ..+++.| +++.||.+||+.|+.+ +|+|+ .+++|+|.|+ . |.+|+.
T Consensus 14 ~v~l~It~s~~~~~~~e~~v-~~~~TV~~LK~kIe~~-------~Gip~--------~~QrLi~~g~~g~~~~~L~~D~~ 77 (97)
T 2kj6_A 14 SVHLHITHANLKSFSADARF-SPQMSVEAVKEKLWKK-------CGTSV--------NSMALELYDDSGSKVAVLSDDSR 77 (97)
T ss_dssp CEEEEEEETTSSCCCEEEEE-CTTCCHHHHHHHHHHH-------HCCCT--------TSEEEEEECSSSCBCCCSSGGGS
T ss_pred eEEEEEEECCCCceEEEEEe-CCCChHHHHHHHHHHH-------HCcCH--------HHeEEEEecCCCcccceecCCcC
Confidence 577888433 3 4799999 9999999999999996 56654 6999999884 3 567899
Q ss_pred hhhhhCCCCCCEEEEEe
Q psy2972 118 LLSELGIESQCEITFVK 134 (143)
Q Consensus 118 tL~dyGI~~g~tl~fv~ 134 (143)
+|.+|||++|++||++.
T Consensus 78 tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 78 PLGFFSPFDGFRLHIID 94 (97)
T ss_dssp CHHHHCCCSCCEEEEEE
T ss_pred CHHHCCCCCCCEEEEEe
Confidence 99999999999999986
No 80
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.30 E-value=4e-12 Score=90.56 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=60.8
Q ss_pred CcEEEEE-EeCCceEEEEecC-CCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCc-----------cc
Q psy2972 46 QSIMCCI-QADNKKFDIVISP-KNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGI-----------KL 112 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~-~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gk-----------kL 112 (143)
..|+|+| +.+|+. .|.| + +++||.+||+.|++++ |+++ .+|+|+|.|+ .|
T Consensus 6 ~~M~irvrs~~G~~-~v~v-~~~~~Tv~~LK~kI~~~~-------gip~--------~~QrL~~~~~~~~~k~~~~~~~l 68 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSV-DGPHITVSQLKTLIQDQL-------QIPI--------HNQTLSTNRNLLLAKSPSDFLAF 68 (107)
T ss_dssp CCEEEEEECSSCEE-EEEE-CCTTSBHHHHHHHHHHHS-------CCCT--------TTCCCBSSGGGGTCCSHHHHTTC
T ss_pred CeEEEEEECCCCCE-EEEE-CCCCCcHHHHHHHHHHHh-------CcCc--------ccCEEEECCccccccCccccccc
Confidence 3599999 788876 7899 7 8899999999999974 4332 4778999888 44
Q ss_pred ---ccccchhhhhCCCCCCEEEEEee
Q psy2972 113 ---TNEKSLLSELGIESQCEITFVKR 135 (143)
Q Consensus 113 ---~~d~~tL~dyGI~~g~tl~fv~r 135 (143)
.+|+.+|.+|||++|++||++..
T Consensus 69 ~~~l~d~~tL~~~gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 69 TDMADPNLRISSLNLAHGSMVYLAYE 94 (107)
T ss_dssp CSSCCTTCBGGGTCCCTTCEEECCCS
T ss_pred cccCCCCCCHHHCCCCCCCEEEEEeC
Confidence 57899999999999999999864
No 81
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=5.9e-12 Score=89.78 Aligned_cols=70 Identities=13% Similarity=0.302 Sum_probs=59.1
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEee--CCcccccccchhhhhCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSF--DGIKLTNEKSLLSELGI 124 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif--~gkkL~~d~~tL~dyGI 124 (143)
|.+++ +..|+.++|.| ++++||.+||+.|+++. |+++ .+|+|+| .|+ | +|+.+|.+|||
T Consensus 9 m~~~~vk~~Gk~~~v~v-~~~~TV~~LK~~I~~~t-------gIpp--------~~QkLi~~~~gk-L-~D~~tLs~~~I 70 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVL-EDTCTVGEIKQILENEL-------QIPV--------SKMLLKGWKTGD-V-EDSTVLKSLHL 70 (100)
T ss_dssp EEEEEEECSSCEEEEEE-ETTSBHHHHHHHHHHHH-------CCCT--------TTCCEECCSSSC-C-CTTSBHHHHCC
T ss_pred eEEEEEEeCCeEEEEEE-CCCCcHHHHHHHHHHHH-------CCCh--------hHeEEEccCCCC-C-CCcCCHHHcCC
Confidence 77777 99999999999 89999999999999974 5433 4667886 555 7 68899999999
Q ss_pred CCCCEEEEEee
Q psy2972 125 ESQCEITFVKR 135 (143)
Q Consensus 125 ~~g~tl~fv~r 135 (143)
++|++||++..
T Consensus 71 ~~gstL~lvl~ 81 (100)
T 2dzm_A 71 PKNNSLYVLTP 81 (100)
T ss_dssp CSEEEEEECCS
T ss_pred CCCCEEEEEec
Confidence 99999999864
No 82
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.28 E-value=1.1e-11 Score=86.21 Aligned_cols=71 Identities=18% Similarity=0.320 Sum_probs=59.0
Q ss_pred EEEEEEeCCc--eEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCC---cc---cccccchh
Q psy2972 48 IMCCIQADNK--KFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDG---IK---LTNEKSLL 119 (143)
Q Consensus 48 m~l~Vk~~g~--~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~g---kk---L~~d~~tL 119 (143)
++|+|+..+. .+++.| ++++||.+||+.|+.+ +|+++ .+|+|+|.| +. |.+|+.+|
T Consensus 8 v~l~I~~~~~~~~~~~~v-~~~~TV~~lK~ki~~~-------~gip~--------~~qrL~~~~~~g~~~~~l~~D~~tL 71 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRY-SRSLTIAEFKCKLELV-------VGSPA--------SCMELELYGADDKFYSKLDQEDALL 71 (95)
T ss_dssp EEEEEEETTSSSCEEEEE-CTTSBHHHHHHHHHHH-------TCSCT--------TTCBCEEECSSSCEEEECCCSSSBT
T ss_pred EEEEEEECCCCeeEEEEc-CccCHHHHHHHHHHHH-------HCCCH--------HHeEEEEeCCCCccccccCCCcCCH
Confidence 7777754555 699999 8999999999999996 56544 588999986 43 55789999
Q ss_pred hhhCCCCCCEEEEEe
Q psy2972 120 SELGIESQCEITFVK 134 (143)
Q Consensus 120 ~dyGI~~g~tl~fv~ 134 (143)
.+|||++|++||++.
T Consensus 72 ~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 72 GSYPVDDGCRIHVID 86 (95)
T ss_dssp TSSSCCTTCEEEEBC
T ss_pred hHCCCCCCCEEEEEE
Confidence 999999999999985
No 83
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.26 E-value=5.7e-12 Score=107.55 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=68.0
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
..|+|+| .++|+.|.|.| ..++||.+||+.|+..+. ++|++ +.+++|+|.|+.| +|+.+|.+|||
T Consensus 6 ~~M~I~VKtl~Gk~~~leV-~~~~TV~~LK~~I~~~~~----~~gip--------~~~QrLiy~GK~L-~D~~tL~dygI 71 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRM-EPDETVKVLKEKIEAEKG----RDAFP--------VAGQKLIYAGKIL-SDDVPIRDYRI 71 (368)
T ss_dssp CCCCEEEEETTTEEEEECC-CTTCBHHHHHHHHHHHTC----SSSCC--------STEEEEESSSSEE-CSSSBTTTTCC
T ss_pred ceEEEEEEeCCCCEEEEEe-CCCChHHHHHHHHHHHhC----cCCCC--------hhheEEEECCeec-CCcCCHHHcCC
Confidence 4699999 77899999999 889999999999999531 13432 3689999999999 57899999999
Q ss_pred CCCCEE-EEEeeeccc
Q psy2972 125 ESQCEI-TFVKRLKDK 139 (143)
Q Consensus 125 ~~g~tl-~fv~rlr~k 139 (143)
++|++| |++.|.|+.
T Consensus 72 ~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 72 DEKNFVVVMVTKTKAG 87 (368)
T ss_dssp CTTSCEEEEEECCCSS
T ss_pred CCCCEEEEEEecCCCC
Confidence 999999 899888864
No 84
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.25 E-value=1.7e-11 Score=84.74 Aligned_cols=71 Identities=7% Similarity=0.016 Sum_probs=57.7
Q ss_pred EEEEEEe---CCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEee-------CCcccccccc
Q psy2972 48 IMCCIQA---DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSF-------DGIKLTNEKS 117 (143)
Q Consensus 48 m~l~Vk~---~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif-------~gkkL~~d~~ 117 (143)
++|.|+. ....++..+ +++.||.+||+.|+.+ +|+|+ .+++|+| .|+.| +|+.
T Consensus 3 V~v~iths~~~~~~~E~r~-~~s~TI~~lK~ki~~~-------~Gip~--------~~QrLi~~~~~~~~~g~~l-~d~~ 65 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRY-GLAQTIESIKENVFTH-------FATPP--------EYMQLQLIDDRGITIEKNM-ANDK 65 (86)
T ss_dssp EEEEEEETTCSCCEEEEEE-ETTSBHHHHHHHHHTT-------SCCCG--------GGEEEEEECTTSCEEESSC-CTTS
T ss_pred EEEEEEEcCCCCeEEEEEc-CccCcHHHHHHHHHHH-------HCCCH--------HHEEEEEecCCCCceeeEc-CCCC
Confidence 4566632 345689999 8899999999999995 67655 6899997 46666 7899
Q ss_pred hhhhhCCCCCCEEEEEee
Q psy2972 118 LLSELGIESQCEITFVKR 135 (143)
Q Consensus 118 tL~dyGI~~g~tl~fv~r 135 (143)
+|.+|||++|++||++.+
T Consensus 66 tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 66 QLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp BGGGGTCCTTCEEEEEEC
T ss_pred CHHHCCCCCCCEEEEEeC
Confidence 999999999999999864
No 85
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.24 E-value=2.3e-11 Score=85.19 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=68.5
Q ss_pred CCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhC
Q psy2972 45 GQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELG 123 (143)
Q Consensus 45 g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyG 123 (143)
+..|+|+| ..+|+.+.+.| .++.++..|++++.++ +|++ +.+++++|+|++| .++.|..+||
T Consensus 3 ~~~i~ikVk~~~g~~v~~~v-k~~t~l~kl~~~y~~~-------~gi~--------~~~~rf~FdG~~l-~~~~Tp~dl~ 65 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKI-KRHTPLSKLMKAYCER-------QGLS--------MRQIRFRFDGQPI-NETDTPAQLE 65 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEE-ETTSCTHHHHHHHHHH-------TTCC--------STTEEEEETTEEC-CTTCCTTTTT
T ss_pred CCeEEEEEECCCCCEEEEEE-CCCChHHHHHHHHHHH-------hCCC--------cccEEEEECCEEc-CCCCCHHHcC
Confidence 56799999 77899999999 9999999999999884 5653 3689999999999 5789999999
Q ss_pred CCCCCEEEEEeeeccc
Q psy2972 124 IESQCEITFVKRLKDK 139 (143)
Q Consensus 124 I~~g~tl~fv~rlr~k 139 (143)
+.+||+|+++.+++|-
T Consensus 66 medgD~Idv~~~q~gg 81 (91)
T 2io0_B 66 MEDEDTIDVFQQQTGG 81 (91)
T ss_dssp CCTTEEEEEEECCCCC
T ss_pred CCCCCEEEEEEeccCC
Confidence 9999999999999883
No 86
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.24 E-value=3.4e-11 Score=87.66 Aligned_cols=72 Identities=21% Similarity=0.274 Sum_probs=59.6
Q ss_pred cEEEEEEeCCc--eEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCC---c---ccccccch
Q psy2972 47 SIMCCIQADNK--KFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDG---I---KLTNEKSL 118 (143)
Q Consensus 47 am~l~Vk~~g~--~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~g---k---kL~~d~~t 118 (143)
.|+|+|+..+. .+++.| ++++||.+||..|+.+ .|+++ .+++|+|.| + .|.+|+.+
T Consensus 6 ~v~l~V~~~~~~~~~e~~v-~~~~TV~~lK~ki~~~-------~Gip~--------~~qrL~~~g~~~~~~~~l~~D~~t 69 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKY-PAGMSLNDLKKKLELV-------VGTTV--------DSMRIQLFDGDDQLKGELTDGAKS 69 (122)
T ss_dssp EEEEEEEESSCCSCEEEEE-ETTSBHHHHHHHHHHH-------HCCCT--------TTEEEEEECSSSSEEEECCCCSSB
T ss_pred EEEEEEEECCCCccEEEEe-CCCCcHHHHHHHHHHH-------hCCCH--------HHeEEEEecCCCccccccCCCcCC
Confidence 47888844444 699999 8899999999999996 46544 588999977 4 35578999
Q ss_pred hhhhCCCCCCEEEEEe
Q psy2972 119 LSELGIESQCEITFVK 134 (143)
Q Consensus 119 L~dyGI~~g~tl~fv~ 134 (143)
|.+|||++|++||++.
T Consensus 70 L~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 70 LKDLGVRDGYRIHAVD 85 (122)
T ss_dssp TTTTTCCSSEEEEEEE
T ss_pred HHHCCCCCCCEEEEEe
Confidence 9999999999999986
No 87
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.21 E-value=4.7e-11 Score=83.53 Aligned_cols=79 Identities=22% Similarity=0.321 Sum_probs=66.8
Q ss_pred ccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhh
Q psy2972 43 LHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSE 121 (143)
Q Consensus 43 ~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~d 121 (143)
+.+..|+|+| ..+|+.+.+.| .++.++..|++++.++ +|++ +.+++++|+|++| .++.|..+
T Consensus 13 ~~~~~i~ikV~~~~g~~i~~~v-~~~t~l~kl~~~y~~~-------~gi~--------~~~~rf~fdG~~l-~~~~Tp~d 75 (93)
T 2d07_B 13 ENNDHINLKVAGQDGSVVQFKI-KRHTPLSKLMKAYCER-------QGLS--------MRQIRFRFDGQPI-NETDTPAQ 75 (93)
T ss_dssp --CCEEEEEEECTTSCEEEEEE-ETTSCHHHHHHHHHHH-------HTCC--------GGGEEEEETTEEC-CTTCCTTT
T ss_pred CCCCeEEEEEECCCCCEEEEEE-ccCCHHHHHHHHHHHH-------hCCC--------ccceEEEECCEEc-CCCCCHHH
Confidence 3567899999 77899999999 8999999999999885 4543 3589999999999 57899999
Q ss_pred hCCCCCCEEEEEeeecc
Q psy2972 122 LGIESQCEITFVKRLKD 138 (143)
Q Consensus 122 yGI~~g~tl~fv~rlr~ 138 (143)
||+.+||+|+++.+++|
T Consensus 76 l~medgD~Idv~~~q~G 92 (93)
T 2d07_B 76 LEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp TTCCTTEEEEEEECC--
T ss_pred cCCCCCCEEEEEeeccC
Confidence 99999999999999987
No 88
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.21 E-value=1.2e-12 Score=102.99 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=0.0
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| .++|+.+++.| ++++||.+||+.|+.. +|+++ .+|+|+|+|+.| .|+.+|. +
T Consensus 1 MqI~VKtL~GktitLeV-~~sdTV~~LK~kI~~k-------eGIP~--------~qQRLIf~GK~L-eD~~TLs-----~ 58 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTL-EQGTSVLDLKSQISQD-------MGFEI--------DMMTLVNNGFIA-PNTELVT-----D 58 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEE-CCcChHHHHHHHHHHH-------hCcCh--------hHEEEEecCeEC-CCCCccc-----C
Confidence 89999 89999999999 8899999999999995 45433 588999999999 4788998 9
Q ss_pred CCEEEEEeeecc
Q psy2972 127 QCEITFVKRLKD 138 (143)
Q Consensus 127 g~tl~fv~rlr~ 138 (143)
|++||++.||||
T Consensus 59 ~STLhLvlRLrG 70 (189)
T 2xzm_9 59 DVTYYLSLKLLG 70 (189)
T ss_dssp ------------
T ss_pred CCEEEEEEecCC
Confidence 999999999997
No 89
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.15 E-value=9.3e-11 Score=84.00 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=70.5
Q ss_pred cCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 44 HGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 44 ~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
.+..|+|+| ..+|+.+.+.| .++.++..|+.++.++ +|++ +.+++++|+|++| .++.|..+|
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kV-k~~t~l~kL~~~y~ek-------~gi~--------~~~~rf~FdG~~l-~~~~Tp~dl 83 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKI-KRHTPLSKLMKAYCER-------QGLS--------MRQIRFRFDGQPI-NETDTPAQL 83 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEE-CTTSCHHHHHHHHHHH-------HTCC--------TTTSCEESSSSBC-CTTSCTTTT
T ss_pred CCCeEEEEEECCCCCEEEEEE-cCCChHHHHHHHHHHH-------hCCC--------cceEEEEECCEEc-CCCCCHHHc
Confidence 456799999 77899999999 9999999999999885 4542 3588999999999 578999999
Q ss_pred CCCCCCEEEEEeeeccccc
Q psy2972 123 GIESQCEITFVKRLKDKVR 141 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~k~~ 141 (143)
++.+||+|+++.+++|-.+
T Consensus 84 ~medgD~Idv~~~q~GG~~ 102 (104)
T 1wz0_A 84 EMEDEDTIDVFQQQTSGPS 102 (104)
T ss_dssp TCCTTEEEEECCCCCCCSS
T ss_pred CCCCCCEEEEEEeccCCCC
Confidence 9999999999999998543
No 90
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.14 E-value=2.1e-11 Score=83.23 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=56.5
Q ss_pred EEEEE-EeCCceEEEE-ecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeC--Ccccc--cccchhhh
Q psy2972 48 IMCCI-QADNKKFDIV-ISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFD--GIKLT--NEKSLLSE 121 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~-V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~--gkkL~--~d~~tL~d 121 (143)
|+|.| ..+|+.. |. + ++++||.|||++|+++. |++ +.+|+|+|+ ++.|. +|+.+|++
T Consensus 1 m~i~vr~~~G~~~-v~~l-~~~~Tv~~Lk~~I~~~~-------gi~--------~~~qrL~~~~p~k~l~l~~~~~tL~~ 63 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGL-SSRTRLRELQGQIAAIT-------GIA--------PGSQRILVGYPPECLDLSDRDITLGD 63 (86)
T ss_dssp CCEEEEETTEEEE-ECSC-CTTCBHHHHHHHHHHHT-------CCC--------TTTCCCEESSCCCCCCCCCSSCBTTT
T ss_pred CEEEEEcCCCCEE-eeec-CCCCCHHHHHHHHHHHh-------CCC--------ccceEEEeCCCCcccccCCCCCCHHH
Confidence 78999 7778654 77 8 88999999999999964 332 246678886 47773 36889999
Q ss_pred hCCCCCCEEEEEee
Q psy2972 122 LGIESQCEITFVKR 135 (143)
Q Consensus 122 yGI~~g~tl~fv~r 135 (143)
|||++|++||++..
T Consensus 64 ~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 64 LPIQSGDMLIVEED 77 (86)
T ss_dssp SSCCTTCEEECCCC
T ss_pred cCCCCCCEEEEEeC
Confidence 99999999999865
No 91
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.12 E-value=1.6e-10 Score=83.64 Aligned_cols=78 Identities=23% Similarity=0.296 Sum_probs=69.0
Q ss_pred cCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 44 HGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 44 ~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
.+..|+|+| ..+|+.+.+.| .++.++..|+.++.++ +|++ +.+++++|+|++| .++.|..+|
T Consensus 23 ~~~~I~IkVk~~~g~~i~fkV-k~~t~l~kL~~ay~ek-------~gi~--------~~~~rfiFdG~~L-~~~~Tp~dl 85 (110)
T 2k8h_A 23 ETALVAVKVVNADGAEMFFRI-KSRTALKKLIDTYCKK-------QGIS--------RNSVRFLFDGTPI-DETKTPEEL 85 (110)
T ss_dssp CCCCEEEEEEETTSCCEEEEE-CTTSSHHHHHHHHHHH-------HTCC--------SSSCEEESSSCBC-CSSSHHHHH
T ss_pred CCCeEEEEEECCCCCEEEEEE-CCCChHHHHHHHHHHH-------hCCC--------cccEEEEECCEEc-CCCCCHHHc
Confidence 456799999 78899999999 9999999999999885 5543 3688999999999 478999999
Q ss_pred CCCCCCEEEEEeeecc
Q psy2972 123 GIESQCEITFVKRLKD 138 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~ 138 (143)
++.+||+|+++..++|
T Consensus 86 ~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 86 GMEDDDVIDAMVEQTG 101 (110)
T ss_dssp HCSSEEEEEEECCCCC
T ss_pred CCCCCCEEEEEEcccC
Confidence 9999999999999987
No 92
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.11 E-value=1.1e-10 Score=97.69 Aligned_cols=73 Identities=14% Similarity=0.262 Sum_probs=60.9
Q ss_pred CCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEe---eCCcccccccchhhh
Q psy2972 45 GQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLS---FDGIKLTNEKSLLSE 121 (143)
Q Consensus 45 g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Li---f~gkkL~~d~~tL~d 121 (143)
...|+|+|+.+|+.++|.| ++++||.+||++|++.. |+++ .+|+|+ |.|+.| +|+.+|++
T Consensus 3 ~~~i~i~Vk~~g~~~~v~v-~~~~Tv~~lK~~I~~~t-------gVpp--------~~QkLi~~k~~Gk~l-~D~~~L~~ 65 (320)
T 3shq_A 3 VKEVVVIVKWSGKEYPVDL-TDQDTVEVLRHEIFRKT-------QVRP--------ERQKLLNLKYKGKTA-ADNVKISA 65 (320)
T ss_dssp -CEEEEEEEETTEEEEEEE-ETTSBHHHHHHHHHHHH-------CCCG--------GGCEETTCBSSSSBC-CTTSBTTS
T ss_pred CceEEEEEEECCEEEEEEE-CCCCcHHHHHHHHHHHH-------CcCH--------HHeEEeecccCCccc-CccccHHH
Confidence 3568999999999999999 89999999999999974 4333 467899 899888 57899999
Q ss_pred hCCCCCCEEEEEe
Q psy2972 122 LGIESQCEITFVK 134 (143)
Q Consensus 122 yGI~~g~tl~fv~ 134 (143)
|||++|++||++-
T Consensus 66 ~~ik~g~~l~L~g 78 (320)
T 3shq_A 66 LELKPNFKLMMVG 78 (320)
T ss_dssp SCCC--CEEEEEC
T ss_pred cCCCCCCEEEEEc
Confidence 9999999999874
No 93
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.10 E-value=2.6e-10 Score=82.12 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=66.9
Q ss_pred ccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhh
Q psy2972 43 LHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSE 121 (143)
Q Consensus 43 ~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~d 121 (143)
..+..|+|+| . +|+.+.+.| ..+.++..|++++.++ +|++ +.+++++|+|++| .++.|..+
T Consensus 27 ~~~~~I~IkV~~-~g~~i~fkI-k~tt~l~kL~~ay~ek-------~gi~--------~~~~rF~FdG~rl-~~~~Tp~d 88 (106)
T 2eke_C 27 KPETHINLKVSD-GSSEIFFKI-KKTTPLRRLMEAFAKR-------QGKE--------MDSLRFLYDGIRI-QADQTPED 88 (106)
T ss_dssp CCCSEEEEEEEC-SSCEEEEEE-ETTSCTHHHHHHHHHH-------HTCC--------GGGEEEEETTEEC-CTTCCTTT
T ss_pred CCCCeEEEEEec-CCcEEEEEe-CCCCHHHHHHHHHHHH-------hCCC--------cccEEEEECCeEc-CCCCCHHH
Confidence 3556799999 7 999999999 9999999999998885 5543 3689999999999 47899999
Q ss_pred hCCCCCCEEEEEeeecc
Q psy2972 122 LGIESQCEITFVKRLKD 138 (143)
Q Consensus 122 yGI~~g~tl~fv~rlr~ 138 (143)
||+.+||+|+++.+++|
T Consensus 89 l~medgD~Idv~~~q~G 105 (106)
T 2eke_C 89 LDMEDNDIIEAHREQIG 105 (106)
T ss_dssp TTCCTTEEEEEEECC--
T ss_pred cCCCCCCEEEEEeeccc
Confidence 99999999999999987
No 94
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.09 E-value=3.3e-10 Score=75.32 Aligned_cols=69 Identities=25% Similarity=0.362 Sum_probs=61.0
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+| ..+|+.+.+.| .++.++..|++++.++ +|.+ +.+++++|+|++| .++.|.+++|+++
T Consensus 2 i~lkV~~~~g~~v~~~v-~~~t~l~kl~~~y~~~-------~gi~--------~~~~rf~fdG~~l-~~~~Tp~~l~med 64 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKI-KRHTPLSKLMKAYCER-------QGLS--------MRQIRFRFDGQPI-NETDTPAQLEMED 64 (72)
T ss_dssp EEEEEECTTSCEEEEEE-CTTSCTHHHHHHHHHH-------HTCC--------TTTCEEEETTEEC-CTTCCTTTTTCCT
T ss_pred EEEEEECCCCCEEEEEE-CCCChHHHHHHHHHHH-------hCCC--------cceEEEEECCEEc-CCCCCHHHcCCCC
Confidence 88999 77899999999 9999999999999885 5543 3688999999999 4789999999999
Q ss_pred CCEEEEE
Q psy2972 127 QCEITFV 133 (143)
Q Consensus 127 g~tl~fv 133 (143)
||+|++.
T Consensus 65 gD~Idv~ 71 (72)
T 1wm3_A 65 EDTIDVF 71 (72)
T ss_dssp TEEEEEE
T ss_pred CCEEEEE
Confidence 9999985
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.05 E-value=1.3e-09 Score=73.86 Aligned_cols=72 Identities=26% Similarity=0.343 Sum_probs=62.3
Q ss_pred CCcEEEEE-EeCCc-eEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 45 GQSIMCCI-QADNK-KFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 45 g~am~l~V-k~~g~-~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
+..|+|+| ..+|+ .+.+.| .++.++..|++++.++ +|.+ +.+++++|+|++| .++.|..+|
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i-~~~t~l~kl~~~y~~~-------~gi~--------~~~~rf~fdG~~l-~~~~Tp~~l 67 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISL-SPDSPLKVLMSHYEEA-------MGLS--------GHKLSFFFDGTKL-SGKELPADL 67 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEE-CTTSCHHHHHHHHHHH-------HTCT--------TCCCEEEETTEEC-CSCCCHHHH
T ss_pred CCEEEEEEEeCCCCEEEEEEE-CCCChHHHHHHHHHHH-------hCCC--------cccEEEEECCEEc-CCCCCHHHc
Confidence 45699999 77896 899999 9999999999999885 4542 3688999999999 578999999
Q ss_pred CCCCCCEEEEE
Q psy2972 123 GIESQCEITFV 133 (143)
Q Consensus 123 GI~~g~tl~fv 133 (143)
|+.+||+|++.
T Consensus 68 ~medgD~Idv~ 78 (79)
T 3a4r_A 68 GLESGDLIEVW 78 (79)
T ss_dssp TCCTTCEEEEE
T ss_pred CCCCCCEEEEe
Confidence 99999999974
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.85 E-value=3.8e-09 Score=73.41 Aligned_cols=72 Identities=17% Similarity=0.268 Sum_probs=58.0
Q ss_pred cEEEEEE----eCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCC-------cccccc
Q psy2972 47 SIMCCIQ----ADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDG-------IKLTNE 115 (143)
Q Consensus 47 am~l~Vk----~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~g-------kkL~~d 115 (143)
.++|+|+ .+|..+++.+ +.+.||.+||..|++.|...+ .+++|.|.+ ..|.+|
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l-~~~~TV~~LK~~i~~~~gip~---------------~~q~L~~~~~~~~~~~~~L~~d 72 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQL-PDSMTVQKVKGLLSRLLKVPV---------------SELLLSYESSKMPGREIELEND 72 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEE-ETTSBHHHHHHHHHTTTTCCT---------------TTCEEEEECTTSCSCEEECCCS
T ss_pred cEEEEEEecCCCCCcEEEEEC-CCCCCHHHHHHHHHHHHCCCh---------------hHeEEEEEcCCCCceeeccCCC
Confidence 4777773 4688999999 889999999999999874322 356787763 236788
Q ss_pred cchhhhhCCCCCCEEEEEe
Q psy2972 116 KSLLSELGIESQCEITFVK 134 (143)
Q Consensus 116 ~~tL~dyGI~~g~tl~fv~ 134 (143)
.++|..|||.+|++||++.
T Consensus 73 ~~~L~~y~i~~G~~I~V~d 91 (97)
T 1wjn_A 73 LQPLQFYSVENGDCLLVRW 91 (97)
T ss_dssp SSBSGGGTCCTTCEEEEEC
T ss_pred cccHhhcCCCCCCEEEEEe
Confidence 9999999999999999976
No 97
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.75 E-value=4e-08 Score=77.83 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=70.5
Q ss_pred ccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 43 LHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 43 ~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
..+.-|+|+|+.+|+.+.+.| ..+.++..|++++.+ |+|.+ +++++++|+|++| .++.|.+++
T Consensus 25 ~~~~~I~LkV~~~g~~v~fkI-k~~t~l~kL~~ay~e-------r~Gi~--------~~~~RF~FdG~rI-~~~~TP~dL 87 (200)
T 3pge_A 25 KPETHINLKVSDGSSEIFFKI-KKTTPLRRLMEAFAK-------RQGKE--------MDSLRFLYDGIRI-QADQTPEDL 87 (200)
T ss_dssp CCCCCEEEEEECSSCEEEEEE-CTTSCTHHHHHHHHH-------HHSSC--------GGGEEEEETTEEC-CTTCCTTTT
T ss_pred CCCCeEEEEEecCCCEEEEEE-ecCCHHHHHHHHHHH-------HhCCC--------hhhEEEEECCEEc-CCCCCHHHc
Confidence 456779999976999999999 999999999999887 46753 3699999999999 579999999
Q ss_pred CCCCCCEEEEEeeeccc
Q psy2972 123 GIESQCEITFVKRLKDK 139 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~k 139 (143)
|+.+||+|++..+++|=
T Consensus 88 ~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 88 DMEDNDIIEAHREQIGG 104 (200)
T ss_dssp TCCTTEEEEEEECCSCC
T ss_pred CCCCCCEEEEEeccCcC
Confidence 99999999999999874
No 98
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.59 E-value=1.8e-07 Score=68.27 Aligned_cols=75 Identities=20% Similarity=0.357 Sum_probs=64.3
Q ss_pred CCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhC
Q psy2972 45 GQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELG 123 (143)
Q Consensus 45 g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyG 123 (143)
+.-|+|.| ..+|+.+.+.| ..+.++..|+.++.++ +|.+ +++++++|+|++| .++.|..++|
T Consensus 38 ~~~I~LKV~~qdg~ev~fkI-k~tt~L~KLm~aY~er-------~Gl~--------~~~irFlFDG~rI-~~~~TP~dL~ 100 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKV-KMTTHLKKLKESYCQR-------QGVP--------MNSLRFLFEGQRI-ADNHTPKELG 100 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEE-ETTSCTHHHHHHHHHH-------HTCC--------TTSEEEEETTEEC-CTTCCTTTTT
T ss_pred CCeEEEEEEcCCCCEEEEEE-ccCChHHHHHHHHHHH-------hCCC--------hhhEEEEECCeEC-CCCCCHHHcC
Confidence 56799999 77899999999 8889999999988884 5542 3689999999999 4789999999
Q ss_pred CCCCCEEEEEeee
Q psy2972 124 IESQCEITFVKRL 136 (143)
Q Consensus 124 I~~g~tl~fv~rl 136 (143)
+.+||+|.+..+-
T Consensus 101 MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 101 MEEEDVIEVYQEQ 113 (115)
T ss_dssp CCTTCEEEEEECC
T ss_pred CCCCCEEEEEeec
Confidence 9999999998764
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.55 E-value=1.4e-07 Score=74.91 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=68.6
Q ss_pred ccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 43 LHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 43 ~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
..+.-|+|+|+.+|+.+.+.| ..+.++..|++++.++ +|.+. ++++++|+|++| +++.|..++
T Consensus 53 dp~e~InLKVk~dG~eV~FKI-KrtTpL~KLmeAYcER-------qGL~~--------~sIRFLFDGqRI-~~ddTPeDL 115 (207)
T 3tix_A 53 KPETHINLKVSDGSSEIFFKI-KKTTPLRRLMEAFAKR-------QGKEM--------DSLTFLYDGIEI-QADQTPEDL 115 (207)
T ss_dssp --CCEEEEEEECSSCEEEEEE-ETTSCTHHHHHHHHHH-------TTCCG--------GGSCEEETTEEC-CSSCCTTTT
T ss_pred CCCCcEEEEEecCCCEEEEEE-ccCChHHHHHHHHHHH-------hCCCc--------ccEEEEECCeec-CCCCCHHHc
Confidence 446779999976999999999 8899999999998884 56433 688999999999 479999999
Q ss_pred CCCCCCEEEEEeeeccc
Q psy2972 123 GIESQCEITFVKRLKDK 139 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~k 139 (143)
++.|||+|++..+.+|=
T Consensus 116 dMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 116 DMEDNDIIEAHREQIGG 132 (207)
T ss_dssp TCCTTEEEEECCCCCTT
T ss_pred CCCCCCEEEEEEeccCC
Confidence 99999999999999884
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.23 E-value=1.4e-07 Score=75.81 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=0.5
Q ss_pred ccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 43 LHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 43 ~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
+.+.-|+|+|..+|+.+.+.| ..+.++..|++++.++ +|.+. ++++++|+|+++ .++.|.+++
T Consensus 17 ~p~e~InLKV~qdGseV~FKI-KrtTpL~KLM~AYcER-------qGLs~--------~siRFLFDGqRI-~dddTPadL 79 (227)
T 3v7o_A 17 KPETHINLKVSDGSSEIFFKI-KKTTPLRRLMEAFAKR-------QGKEM--------DSLRFLYDGIRI-QADQTPEDL 79 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEEeCCCCEEEEEE-ccCChHHHHHHHHHHH-------hCCCc--------cceEEEECCEec-CCCCCHHHc
Confidence 456678999966899999999 8889999999988884 55432 588999999999 479999999
Q ss_pred CCCCCCEEEEEeeeccc
Q psy2972 123 GIESQCEITFVKRLKDK 139 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~k 139 (143)
|++|||+|+++.+.+|=
T Consensus 80 ~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 80 DMEDNDIIEAHREQIGG 96 (227)
T ss_dssp ----------------C
T ss_pred CCCCCCEEEEEecccCC
Confidence 99999999999999885
No 101
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.10 E-value=2.3e-05 Score=54.00 Aligned_cols=74 Identities=19% Similarity=0.326 Sum_probs=58.5
Q ss_pred cCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccc-eEEEeeCCcccccccchhhh
Q psy2972 44 HGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWK-SYWLSFDGIKLTNEKSLLSE 121 (143)
Q Consensus 44 ~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~-~~~Lif~gkkL~~d~~tL~d 121 (143)
|-+-+++.+ .....-+-+.| +.++||.+|=++...+ .|+ || . .++|.|+|..| +.++++++
T Consensus 6 ~~~~~~~~~~~~~~~dl~f~I-~~~t~v~kLi~ayc~~-------~~I----~~----~~~IrllFDGdRL-dp~~tp~D 68 (82)
T 3goe_A 6 HHKLITLLLRSSKSEDLRLSI-PVDFTVKDLIKRYCTE-------VKI----SF----HERIRLEFEGEWL-DPNDQVQS 68 (82)
T ss_dssp CCCEEEEEEEESSSCCEEEEE-ETTSBHHHHHHHHHHH-------HTC----CC----CTTCEEEETTEEC-CTTSBGGG
T ss_pred hhHHHHHhhhccCCCCeEEEe-cCCCCHHHHHHHHHHH-------cCC----Cc----CceEEEEEcCccc-CccCChhh
Confidence 445677777 44455599999 8999999998887774 443 42 4 78999999999 57999999
Q ss_pred hCCCCCCEEEEEe
Q psy2972 122 LGIESQCEITFVK 134 (143)
Q Consensus 122 yGI~~g~tl~fv~ 134 (143)
|++.|||+|-+++
T Consensus 69 lemeD~D~IDvmL 81 (82)
T 3goe_A 69 TELEDEDQVSVVL 81 (82)
T ss_dssp SSCCTTCEEEEEC
T ss_pred hCCcCCceeeeee
Confidence 9999999998764
No 102
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.08 E-value=6.2e-06 Score=56.76 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=56.4
Q ss_pred cCCcEEEEEEe---CCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhh
Q psy2972 44 HGQSIMCCIQA---DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLS 120 (143)
Q Consensus 44 ~g~am~l~Vk~---~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~ 120 (143)
||.-+.|++.+ .++.+++.| |..-||++|.+.+.+.+.+...+..+ -+.+....|.-| .++++|+
T Consensus 1 ~~~yI~ITidl~~y~~~~~DLRI-P~~~tvK~Li~~l~ea~~l~~~~~~~----------~~irv~NK~~~L-~~~~~L~ 68 (81)
T 2bps_A 1 HGSYIDITIDLKHYNGSVFDLRL-SDYHPVKKVIDIAWQAQSVSMPPREG----------HWIRVVNKDKVF-SGECKLS 68 (81)
T ss_dssp CCCEEEEEEECTTTTCCEEEEEE-ETTSBTTHHHHHHHHHSCCCSCCCTT----------CEEEEGGGTEEE-ETTSBTG
T ss_pred CCcEEEEEEEeeccCCceEEEEC-CCchhHHHHHHHHHHHhCCCcCCCCC----------CEEEEecCCEEE-cCCCEEe
Confidence 45556777754 689999999 88899999999999998654432211 033444445455 5899999
Q ss_pred hhCCCCCCEEEE
Q psy2972 121 ELGIESQCEITF 132 (143)
Q Consensus 121 dyGI~~g~tl~f 132 (143)
+|||.|||.|-+
T Consensus 69 d~~ItnGD~Lei 80 (81)
T 2bps_A 69 DCGITNGDRLEI 80 (81)
T ss_dssp GGTCCTTCEEEE
T ss_pred eCCcCCCCEEEE
Confidence 999999998853
No 103
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.04 E-value=2.2e-06 Score=58.17 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=50.5
Q ss_pred CcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCC-ccc-ccccchhhhhC
Q psy2972 46 QSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDG-IKL-TNEKSLLSELG 123 (143)
Q Consensus 46 ~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~g-kkL-~~d~~tL~dyG 123 (143)
.+|.|.|+..+-.+-|.| ++++||.+|+..|++.+......+ .+.+.|.- +.| ...+.+|+++|
T Consensus 3 ~~m~lRvrs~~G~~Ri~v-~~~~t~~~L~~~I~~~~~i~~~~~-------------~l~~~~~p~~~l~~~~~~~l~~lg 68 (80)
T 2pjh_A 3 ESIIIRVQSPDGVKRITA-TKRETAATFLKKVAKEFGFQNNGF-------------SVYINRNKTGEITASSSKSLHLLK 68 (80)
T ss_dssp CCCCCEEECSSEEEECCC-CSSCCHHHHHHHHHHHTCCCTTTC-------------CCCCSCCGGGGSSSCCCCTTTTTC
T ss_pred CcEEEEEECCCCCEEEEc-CCcChHHHHHHHHHHHcCCCCCcc-------------eEEecCCCCCcccCCCCCCHHHcC
Confidence 458899944434666778 888999999999999875332221 11233322 223 23678999999
Q ss_pred CCCCCEEEEEe
Q psy2972 124 IESQCEITFVK 134 (143)
Q Consensus 124 I~~g~tl~fv~ 134 (143)
|++||+|++..
T Consensus 69 l~hGd~l~l~~ 79 (80)
T 2pjh_A 69 IKHGDLLFLFP 79 (80)
T ss_dssp CCTTCCEEC--
T ss_pred CCCCCEEEEec
Confidence 99999999764
No 104
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.72 E-value=0.00021 Score=50.36 Aligned_cols=75 Identities=23% Similarity=0.362 Sum_probs=59.8
Q ss_pred hhccCCcEEEEE-EeCCc-eEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccch
Q psy2972 41 ELLHGQSIMCCI-QADNK-KFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSL 118 (143)
Q Consensus 41 al~~g~am~l~V-k~~g~-~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~t 118 (143)
+-+.+..++|.| ..+|+ .+.+.| ..+.++..|-.+..++ .|.+ ++++++.|+|.+| ..+.|
T Consensus 19 ~~~~~~~I~LkV~~~dg~~~v~fkI-k~~t~l~kLm~aY~~~-------~g~~--------~~~vrF~FDG~rI-~~~~T 81 (97)
T 2jxx_A 19 STETSQQLQLRVQGKEKHQTLEVSL-SRDSPLKTLMSHYEEA-------MGLS--------GRKLSFFFDGTKL-SGREL 81 (97)
T ss_dssp -CCSCSEEEEEEEESSSSCEEEEEE-ETTSCHHHHHHHHHHH-------TTCS--------SSCCEEEETTEEC-CSCSC
T ss_pred CCCCCCeEEEEEEcCCCCEEEEEEE-CCCChHHHHHHHHHHH-------HCCC--------cccEEEEECCEEc-CCCCC
Confidence 445667899999 66784 789999 8888888887776664 4432 3588999999999 47899
Q ss_pred hhhhCCCCCCEEEE
Q psy2972 119 LSELGIESQCEITF 132 (143)
Q Consensus 119 L~dyGI~~g~tl~f 132 (143)
-.++|+.+||+|-+
T Consensus 82 P~dLdMEDgD~IDv 95 (97)
T 2jxx_A 82 PADLGMESGDLIEV 95 (97)
T ss_dssp HHHHTCCTTEEEEE
T ss_pred HHHcCCCCCCEEEE
Confidence 99999999999976
No 105
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.67 E-value=6.1e-06 Score=70.39 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred ccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 43 LHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 43 ~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
+.+.-++|+|+.+|+.+.+.| ..++++..|+++..++ +|.+ ++++++.|+|+++. ++.|.+++
T Consensus 17 ~~~~~I~LKV~~~g~~v~FkI-k~~t~l~kLm~aY~~r-------~G~~--------~~~~rFlFdG~rI~-~~~TP~~L 79 (360)
T 3ix6_A 17 KPETHINLKVSDGSSEIFFKI-KKTTPLRRLMEAFAKR-------QGKE--------MDSLRFLYDGIRIQ-ADQTPEDL 79 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEEecCCcEEEEEE-ecCChHHHHHHHHHHH-------hCCC--------cceEEEEECCeECC-CCCChHHc
Confidence 345678899944788899999 8889999999988874 4542 26889999999994 78999999
Q ss_pred CCCCCCEEEEEeeeccc
Q psy2972 123 GIESQCEITFVKRLKDK 139 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~k 139 (143)
|+++||+|.+..+.+|-
T Consensus 80 ~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 80 DMEDNDIIEAHREQIGG 96 (360)
T ss_dssp -----------------
T ss_pred CCCccchhhhhhccCch
Confidence 99999999999998874
No 106
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.60 E-value=0.00012 Score=51.32 Aligned_cols=78 Identities=10% Similarity=0.123 Sum_probs=60.3
Q ss_pred hccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhh
Q psy2972 42 LLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLS 120 (143)
Q Consensus 42 l~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~ 120 (143)
.--|..|.|+| ..+++...|.| .++.|+.|+=+..-++|.+. |.+|.|.|+++.| |-.-.++
T Consensus 4 ~~~~~~m~v~Vl~~n~rr~~VKv-tp~t~L~~VL~eaC~K~gl~---------------~~~~~Lkh~~k~l-DLSlpfR 66 (90)
T 2al3_A 4 PAGGGGSAVSVLAPNGRRHTVKV-TPSTVLLQVLEDTCRRQDFN---------------PSEYDLKFQRTVL-DLSLQWR 66 (90)
T ss_dssp ------CCEEEECTTSCEEEECC-CTTSBHHHHHHHHHHHTTCC---------------GGGCEEEETTEEE-SSSCBHH
T ss_pred cccCCccEEEEEcCCCcEEEEEE-CCCCCHHHHHHHHHHHhCCC---------------hhhCeEEeCCEec-cccceeE
Confidence 34577899999 88899999999 89999999655555555432 3577999999998 6789999
Q ss_pred hhCCCCCCEEEEEeee
Q psy2972 121 ELGIESQCEITFVKRL 136 (143)
Q Consensus 121 dyGI~~g~tl~fv~rl 136 (143)
-.||-||+.|.++..=
T Consensus 67 lsgLpnnAkLELv~~s 82 (90)
T 2al3_A 67 FANLPNNAKLEMVPVS 82 (90)
T ss_dssp HHCCCSSCEEEEECSS
T ss_pred ecCCCCCCEEEEEEcc
Confidence 9999999999998754
No 107
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.58 E-value=0.0002 Score=56.14 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=67.7
Q ss_pred ccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 43 LHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 43 ~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
..+..+.|+|+.+|+.+.+.| ..+.++..|+++..++ +|.+. ++++++|+|+++ .++.|-++.
T Consensus 17 ~~~~~i~ikv~~~~~~v~~~i-~~~~~l~kl~~~y~~~-------~g~~~--------~~~~f~fdG~~i-~~~~Tpk~L 79 (209)
T 3uf8_A 17 KPETHINLKVSDGSSEIFFKI-KKTTPLRRLMEAFAKR-------QGKEM--------DSLRFLYDGIRI-QADQTPEDL 79 (209)
T ss_dssp -CCSEEEEEEECSSCEEEEEE-ETTSCTHHHHHHHHHH-------HTCCG--------GGCEEEETTEEC-CTTCCTTTT
T ss_pred CCCCcEEEEEEcCCCEEEEEE-eeCCHHHHHHHHHHHh-------hCCCh--------heEEEEECCEec-cCCCChHHh
Confidence 456679999944888999999 8889999999998884 56543 588999999999 579999999
Q ss_pred CCCCCCEEEEEeeeccc
Q psy2972 123 GIESQCEITFVKRLKDK 139 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~k 139 (143)
++.+||+|.+....+|-
T Consensus 80 ~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 80 DMEDNDIIEAHREQIGG 96 (209)
T ss_dssp TCCTTEEEEEECSCTTC
T ss_pred hhcccccchhhcccccc
Confidence 99999999999888773
No 108
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.30 E-value=0.0023 Score=45.20 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=61.2
Q ss_pred hccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhh
Q psy2972 42 LLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSE 121 (143)
Q Consensus 42 l~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~d 121 (143)
.+.+..+.|.|+.+|...-+.| ..+.-...|.+|..+ |+|... ++.+..|+|.++ .++.|-++
T Consensus 16 ~~~~~~IniKV~~~g~ev~FkI-K~tt~l~KL~~aYc~-------r~gv~~--------~sirFlfDG~rI-~~~~TP~~ 78 (95)
T 2l76_A 16 PETPRLFPLKIRCRADLVRLPL-RMSEPLQSVVDHMAT-------HLGVSP--------SRILLLFGETEL-SPTATPRT 78 (95)
T ss_dssp CSCCCCEEEEEECSSSEEEEEE-CSSSCTHHHHHHHHH-------HHTSCG--------GGEEEEETTEEC-CTTSCHHH
T ss_pred CCCCCeEEEEEEcCCcEEEEEE-ecCChHHHHHHHHHh-------hcCCCh--------hhEEEEECCcCC-CCCCCHhH
Confidence 5667789999966799999999 777666666666544 677644 688999999999 57899999
Q ss_pred hCCCCCCEEEEEe
Q psy2972 122 LGIESQCEITFVK 134 (143)
Q Consensus 122 yGI~~g~tl~fv~ 134 (143)
+|+.+||+|-+..
T Consensus 79 L~meD~DiID~~~ 91 (95)
T 2l76_A 79 LKLGVADIIDCVV 91 (95)
T ss_dssp HTCCSSCEEEEEE
T ss_pred cCCCCCCEEEEEE
Confidence 9999999997653
No 109
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.13 E-value=6.7e-05 Score=63.10 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=0.0
Q ss_pred ccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhh
Q psy2972 43 LHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122 (143)
Q Consensus 43 ~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dy 122 (143)
+.+..+.|+|..+|+.+.+.| ..+.+...|+++..++ +|.+. +++++.|+|+++ .++.|-+++
T Consensus 26 ~~~~~i~lkv~~~~~~~~~~i-~~~~~~~~l~~~y~~~-------~g~~~--------~~~~f~f~G~~i-~~~~Tp~~l 88 (389)
T 4da1_A 26 KPETHINLKVSDGSSEIFFKI-KKTTPLRRLMEAFAKR-------QGKEM--------DSLRFLYDGIRI-QADQAPEDL 88 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcEEEEEecCCcEEEEEE-CCCChHHHHHHHHHHH-------hCCCc--------ceEEEEECCEEc-CCCCCHHHc
Confidence 455678889933788889999 8888999999998885 44332 588999999999 478999999
Q ss_pred CCCCCCEEEEEeeeccc
Q psy2972 123 GIESQCEITFVKRLKDK 139 (143)
Q Consensus 123 GI~~g~tl~fv~rlr~k 139 (143)
|+++||+|.+....+|-
T Consensus 89 ~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 89 DMEDNDIIEAHREQIGG 105 (389)
T ss_dssp -----------------
T ss_pred CCCCCCEeeeeeccccc
Confidence 99999999999988864
No 110
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=96.28 E-value=0.018 Score=47.69 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=57.1
Q ss_pred cEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEee------CCcccccccchhh
Q psy2972 47 SIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSF------DGIKLTNEKSLLS 120 (143)
Q Consensus 47 am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif------~gkkL~~d~~tL~ 120 (143)
++.+.|...+..-.+.+ .++.||.|.-+.|.+++..... + -|..|.|.- .|.-|. +.++|.
T Consensus 3 ~~~~~~~~~~~~~~~~f-~~~~~v~~~~~~i~e~~~~~~~--~---------~~~~y~l~~~~~~~~~~~Wl~-~~~~l~ 69 (371)
T 3ivf_A 3 ALSLKISIGNVVKTMQF-EPSTMVYDACRMIRERIPEALA--G---------PPNDFGLFLSDDDPKKGIWLE-AGKALD 69 (371)
T ss_dssp CEEEEEEETTEEEEEEE-CTTCBHHHHHHHHHTTCGGGGS--S---------CGGGEEEEECCSSGGGCEECC-TTSBGG
T ss_pred cEEEEEEecceeEEEEE-CCCCCHHHHHHHHHHhcccccC--C---------CHHHCeEeccCCCCCcCEecc-CCCCHH
Confidence 46677766677788888 8999999999999998632111 1 267777766 234574 566999
Q ss_pred hhCCCCCCEEEEEeee
Q psy2972 121 ELGIESQCEITFVKRL 136 (143)
Q Consensus 121 dyGI~~g~tl~fv~rl 136 (143)
.||+++|+.+++..+-
T Consensus 70 ~y~~~~~~~l~~~~~~ 85 (371)
T 3ivf_A 70 YYMLRNGDTMEYRKKQ 85 (371)
T ss_dssp GGTCCTTCEEEEEECE
T ss_pred HhCCCCCceeeccCce
Confidence 9999999999998653
No 111
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=96.24 E-value=0.013 Score=41.10 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=40.1
Q ss_pred EEEE-EeC-CceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccc
Q psy2972 49 MCCI-QAD-NKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNE 115 (143)
Q Consensus 49 ~l~V-k~~-g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d 115 (143)
-|.| ..+ +....|.| .+..||..+|++|+++ +|++. .+|.|+|+|+.|.-+
T Consensus 14 vvHVf~~~~a~~h~v~I-~~~etv~~~ke~V~eq-------TgIp~--------~~Q~LL~eg~~l~l~ 66 (94)
T 4efo_A 14 VIHVFSLQQMTAHKIYI-HSYNTATIFHELVYKQ-------TKIIS--------SNQELIYEGRRLVLE 66 (94)
T ss_dssp EEEEEETTTTEEEEEEE-ETTCBHHHHHHHHHHH-------HCCCG--------GGEEEEETTEEECCC
T ss_pred eEEEEEcccceEEEEEe-ccchHHHHHHHHHHHH-------hCCCH--------HHHHHHhCCCccccC
Confidence 3455 444 78889999 7888999999999996 56644 689999999887533
No 112
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.06 E-value=0.055 Score=39.04 Aligned_cols=80 Identities=11% Similarity=0.067 Sum_probs=49.6
Q ss_pred CcEEEEE-Ee--CCceEEEEecCCCCcHHHHHHHHHHHHh---HhHhhcccccccccccccceEEEee----CCcccccc
Q psy2972 46 QSIMCCI-QA--DNKKFDIVISPKNTRVSDLKRTIERQIT---MQMKRKGLSKQISWRHVWKSYWLSF----DGIKLTNE 115 (143)
Q Consensus 46 ~am~l~V-k~--~g~~~~V~V~~~~aTV~dLK~aI~~~~~---~~~~reg~~~~IsW~~vw~~~~Lif----~gkkL~~d 115 (143)
++|+|+| -. ++..++|.| -+-+||.+.|+.|-.++- -+.+|-. ...+.|-+ .|..|.+.
T Consensus 10 ~~ltl~v~~~~~~~~~i~vkV-LdCDTItQvKeKiLd~vyk~~pyS~rP~----------~~~~dLEwr~g~~~~iL~D~ 78 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAIPVKV-LNCDTISQVKEKIIDQVYRGQPCSCWPR----------PDSVVLEWRPGSTAQILSDL 78 (111)
T ss_dssp CEEEEEEEETTSCCCCEEEEE-ETTCBHHHHHHHHHHHHTC-------------------CCSEEEEEC--CCCEECCSS
T ss_pred EEEEEEEEecCCCCCceeeee-eccCcHHHHHHHHHHHHHcCCccccCCC----------CCceeeEEecCCCCcccccc
Confidence 3577777 43 356699999 788999999999988862 0111100 01223332 12223221
Q ss_pred ------------cchhhhhCCCCCCEEEEEeee
Q psy2972 116 ------------KSLLSELGIESQCEITFVKRL 136 (143)
Q Consensus 116 ------------~~tL~dyGI~~g~tl~fv~rl 136 (143)
-.||+.|+|.||++|-|+.++
T Consensus 79 D~ts~~~~~wkrLNTL~HY~V~dgatl~l~~~~ 111 (111)
T 4e71_A 79 DLTSQREGRWKRVNTLMHYNVRDGATLILSKVG 111 (111)
T ss_dssp CTTSCC---CCCCCBHHHHTCCTTCEEEEEEC-
T ss_pred CccceecCcceEecchhhcCCCCCCEEEEEeCC
Confidence 158999999999999998763
No 113
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.70 E-value=0.024 Score=41.78 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=30.8
Q ss_pred EEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHh
Q psy2972 49 MCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQ 84 (143)
Q Consensus 49 ~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~ 84 (143)
.|+| -.||...++.| ..+.||.+++..|..++..+
T Consensus 13 ~LkV~llDg~~ktl~V-D~S~~V~~lv~~Ic~kigI~ 48 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMV-DDSKTVTDMLMTICARIGIT 48 (128)
T ss_dssp EEEEECTTSCEEEEEE-EECSSHHHHHHHHHHHHTCC
T ss_pred cEEEEcCCCCEEEEEe-CCCcCHHHHHHHHHHHhCCC
Confidence 5778 78899999999 99999999999999998643
No 114
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=95.59 E-value=0.063 Score=35.73 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=54.1
Q ss_pred CcEEEEEEe-CCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEe--eCCcccc--cccchhh
Q psy2972 46 QSIMCCIQA-DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLS--FDGIKLT--NEKSLLS 120 (143)
Q Consensus 46 ~am~l~Vk~-~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Li--f~gkkL~--~d~~tL~ 120 (143)
...+|.|++ +|+.+.-.. ..++||.+|...|... +. -+..|.|. |-.+.+. +.+.+|.
T Consensus 6 ~~~~i~iRlpdG~r~~~~F-~~~~tl~~v~~fv~~~--------~~--------~~~~f~L~t~fPrk~l~~~d~~~TL~ 68 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRF-LASNKLQIVFDFVASK--------GF--------PWDEYKLLSTFPRRDVTQLDPNKSLL 68 (84)
T ss_dssp CEEEEEEECTTSCEEEEEE-ETTSBHHHHHHHHHHT--------TC--------CTTTEEEECSSSCCBGGGSCTTSBTT
T ss_pred CeEEEEEECCCCCEEEEEe-CCCCCHHHHHHHHHHc--------CC--------CCCCeEEEeCCCCCCCcCCCCCCCHH
Confidence 356777844 588888888 8889999999999872 11 13466666 3467774 5578999
Q ss_pred hhCCCCCCEEEEEe
Q psy2972 121 ELGIESQCEITFVK 134 (143)
Q Consensus 121 dyGI~~g~tl~fv~ 134 (143)
+.|+.++++|.+..
T Consensus 69 e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 69 EVKLFPQETLFLEA 82 (84)
T ss_dssp TTTCCSEEEEEEEE
T ss_pred HCCCCCCCEEEEEe
Confidence 99999999998753
No 115
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.99 E-value=0.14 Score=35.90 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=61.3
Q ss_pred cCCCCCCCHHHHHhHHhhccCCcEEEEEEe-CCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceE
Q psy2972 25 SHLPQDVTVEEIKSEMELLHGQSIMCCIQA-DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSY 103 (143)
Q Consensus 25 ~dlp~~~t~~ev~~~ial~~g~am~l~Vk~-~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~ 103 (143)
..||.++..++ ....+|-||+ +|+.+.-.. ..++||.+|...|... +. .+..|
T Consensus 10 ~~lp~EP~~~~---------~~~~~IqiRlpdG~r~~rrF-~~~~tl~~v~~fv~~~--------~~--------~~~~f 63 (109)
T 2cr5_A 10 PDLPEEPSETA---------EEVVTVALRCPNGRVLRRRF-FKSWNSQVLLDWMMKV--------GY--------HKSLY 63 (109)
T ss_dssp CCCCCCCCSSC---------SSEEEEEEECTTSCEEEEEE-ESSSBTHHHHHHHHHH--------TC--------CTTTE
T ss_pred ccCCCCCCCCC---------CCcEEEEEECCCCCEEEEEe-CCCCCHHHHHHHHHhc--------CC--------CCCCe
Confidence 46777776321 3468888855 588888888 8889999999999863 11 23456
Q ss_pred EEe--eCCcccc-cccchhhhhCCCCCCEEEEEe
Q psy2972 104 WLS--FDGIKLT-NEKSLLSELGIESQCEITFVK 134 (143)
Q Consensus 104 ~Li--f~gkkL~-~d~~tL~dyGI~~g~tl~fv~ 134 (143)
.|+ |=.+.|. +.+.||++.|+.++..|.+..
T Consensus 64 ~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 64 RLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 665 4477786 468999999999999987754
No 116
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.95 E-value=0.16 Score=37.92 Aligned_cols=85 Identities=14% Similarity=0.188 Sum_probs=50.7
Q ss_pred CcEEEEE-EeC------CceEEEEecCCCCcHHHHHHHHHHHHhH---hHhhcc-cccccccccccceEEEeeCC-----
Q psy2972 46 QSIMCCI-QAD------NKKFDIVISPKNTRVSDLKRTIERQITM---QMKRKG-LSKQISWRHVWKSYWLSFDG----- 109 (143)
Q Consensus 46 ~am~l~V-k~~------g~~~~V~V~~~~aTV~dLK~aI~~~~~~---~~~reg-~~~~IsW~~vw~~~~Lif~g----- 109 (143)
++|+|.| -.+ ...++|.| -+-+||.+.|+.|-+++-. |.+|-. ..--+-||.== ...++-..
T Consensus 23 ~~ltl~v~~~~~~~~~~~~~i~VkV-LdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~-~g~liL~D~D~tS 100 (138)
T 2r2o_A 23 RPLTLNALLAVGPGAGEAQGVPVKV-LDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGV-AGHLILSDEDVTS 100 (138)
T ss_dssp CEEEEEEEEC-------CCCEEEEE-ETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSS-SCEEEECSSSTTC
T ss_pred EEEEEEEEccCCcccccCCceeEEE-eccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCC-cCceEeeccCCcc
Confidence 4688888 542 35699999 8889999999999988721 111100 00112232211 11221111
Q ss_pred ------cccccccchhhhhCCCCCCEEEEEeee
Q psy2972 110 ------IKLTNEKSLLSELGIESQCEITFVKRL 136 (143)
Q Consensus 110 ------kkL~~d~~tL~dyGI~~g~tl~fv~rl 136 (143)
++| .||+.|+|.||++|-++.+.
T Consensus 101 ~~~~~wkrL----NTL~HY~V~Dga~l~l~~~~ 129 (138)
T 2r2o_A 101 EVQGLWRRL----NTLQHYKVPDGATVALVPCL 129 (138)
T ss_dssp CEETTEEEC----CBHHHHTCCTTCEEEEEEC-
T ss_pred cccCCceee----cchhccCCCCCCEEEEEECC
Confidence 122 39999999999999999874
No 117
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=94.59 E-value=0.22 Score=36.09 Aligned_cols=89 Identities=15% Similarity=0.237 Sum_probs=50.1
Q ss_pred CcEEEEE-EeC---CceEEEEecCCCCcHHHHHHHHHHHHh----HhHhhcc-cccccccccc-cceEEEeeC--Ccccc
Q psy2972 46 QSIMCCI-QAD---NKKFDIVISPKNTRVSDLKRTIERQIT----MQMKRKG-LSKQISWRHV-WKSYWLSFD--GIKLT 113 (143)
Q Consensus 46 ~am~l~V-k~~---g~~~~V~V~~~~aTV~dLK~aI~~~~~----~~~~reg-~~~~IsW~~v-w~~~~Lif~--gkkL~ 113 (143)
++|+|+| -.+ ...++|.| -+-+||.+.|+.|-.++- +.+ |-. .....-|+.= -.+..|.-. -.++.
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkV-LdCDTItQvKeKiLd~vyk~~p~S~-rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~ 89 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKI-LNCDTITQVKEKILDAIFKNVPCSH-RPKAADMDLEWRQGSGARMILQDEDITTKIE 89 (117)
T ss_dssp CEEEEEECCC----CCCEEEEE-ETTSBHHHHHHHHHHHHTTTSCGGG-SCCGGGEEEEEECTTSCEEEECSSSTTCCC-
T ss_pred EEEEEEEEccCCCCCCceEeee-ecCCchHHHHHHHHHHHhcCCCccc-CCCCCceeEEEecCCCCceEeecCCCccEec
Confidence 4578887 433 45589999 788999999999988862 111 100 0112223221 011111110 00111
Q ss_pred c---ccchhhhhCCCCCCEEEEEeee
Q psy2972 114 N---EKSLLSELGIESQCEITFVKRL 136 (143)
Q Consensus 114 ~---d~~tL~dyGI~~g~tl~fv~rl 136 (143)
+ --.||+.|+|.||++|-++.|-
T Consensus 90 ~~wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 90 NDWKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp --CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred CcceEeccccccCCCCCCEEEEEeCC
Confidence 0 0158999999999999998763
No 118
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=94.32 E-value=0.12 Score=40.31 Aligned_cols=76 Identities=9% Similarity=0.195 Sum_probs=51.6
Q ss_pred EEEEE-EeCC--ceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeC---Ccccccccchhhh
Q psy2972 48 IMCCI-QADN--KKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFD---GIKLTNEKSLLSE 121 (143)
Q Consensus 48 m~l~V-k~~g--~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~---gkkL~~d~~tL~d 121 (143)
+.+++ +.+. ..+.+.+ ...+||.+|++.+.+.|...++++- ++| .+|. ...|.+++.||.+
T Consensus 128 ~~l~l~~~~~~~~~~~~~~-Sk~~ti~~l~~~~~~~~~i~~~~~~--------RlW----~~~~~~~~~~L~~~~~tl~~ 194 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRF-SKADTIDTIEKEIRKIFSIPDEKET--------RLW----NKYMSNTFEPLNKPDSTIQD 194 (217)
T ss_dssp EEEEEEETTEEEEEEEEEE-CTTSBHHHHHHHHHHHTTCCTTSCE--------EEE----EEEETTEEEECCCTTSBHHH
T ss_pred cEEEEEecCCCCcceEEEE-cccchHHHHHHHHHHHhCCCCCCce--------EEE----EecCCCCeeecCCCCCCHHH
Confidence 44455 3332 2366777 7789999999999999866544321 123 3332 2355555789999
Q ss_pred hCCCCCCEEEEEeee
Q psy2972 122 LGIESQCEITFVKRL 136 (143)
Q Consensus 122 yGI~~g~tl~fv~rl 136 (143)
++|.+|.+|-+-.|.
T Consensus 195 ~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 195 AGLYQGQVLVIEQKN 209 (217)
T ss_dssp HTCCTTCEEEEEECC
T ss_pred hCCCCCCEEEEEEec
Confidence 999999999887764
No 119
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.15 E-value=0.1 Score=41.15 Aligned_cols=65 Identities=8% Similarity=0.255 Sum_probs=47.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCC---cccccccchhhhhCCCCCCEEEEEee
Q psy2972 59 FDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDG---IKLTNEKSLLSELGIESQCEITFVKR 135 (143)
Q Consensus 59 ~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~g---kkL~~d~~tL~dyGI~~g~tl~fv~r 135 (143)
+.+.+ ...+||.+|++.+.+.|...++++- .+|.++++ ..|.+.+.||.++++.+|.+|-+-.|
T Consensus 154 ~~~~~-Sk~~ti~~l~~~~~~~~~i~~~~~~------------RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r 220 (231)
T 3jyu_A 154 LSCHF-SKADTIATIEKEMRKLFNIPAERET------------RLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQ 220 (231)
T ss_dssp EEEEE-CTTCBHHHHHHHHHHHTTCCTTSCE------------EEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEEC
T ss_pred EEEEe-cccCcHHHHHHHHHHHhCCCCCCeE------------EEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEe
Confidence 55667 6778999999999999866544221 23444422 45655679999999999999988776
Q ss_pred e
Q psy2972 136 L 136 (143)
Q Consensus 136 l 136 (143)
.
T Consensus 221 ~ 221 (231)
T 3jyu_A 221 N 221 (231)
T ss_dssp C
T ss_pred c
Confidence 4
No 120
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.73 E-value=0.68 Score=34.05 Aligned_cols=80 Identities=8% Similarity=0.069 Sum_probs=49.0
Q ss_pred cEEEEE-Ee--CCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccc--cceEEEee----CCc-cccc--
Q psy2972 47 SIMCCI-QA--DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHV--WKSYWLSF----DGI-KLTN-- 114 (143)
Q Consensus 47 am~l~V-k~--~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~v--w~~~~Lif----~gk-kL~~-- 114 (143)
+++|.+ -. ++..++|.| -+-+||.+.|+.|-.++- + +. ++.+- -..+.|-+ .|. .|.+
T Consensus 4 ~ltl~~~~~~~~~~~i~VkV-LdCDTItQvKeKiLd~vy----k-~~----p~S~rP~~~~~dLEwr~g~~~~~iL~D~D 73 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRA-MDTDTLTQVKEKILEAFC----K-NV----PYSQWPRAEDVDLEWFASSTQSYILRDLD 73 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEE-ETTSBHHHHHHHHHHHHS----T-TS----CGGGSCCGGGEEEEEECSSSCEEECCSSS
T ss_pred EEEEEEEecCCCCCceeeee-eccCchhhhhHHHHHHHh----c-cC----CcccCCCCcccceEEecCCCCceEeecCC
Confidence 456666 42 356699999 788999999999988862 0 00 00000 01333333 111 1221
Q ss_pred ------c----cchhhhhCCCCCCEEEEEeee
Q psy2972 115 ------E----KSLLSELGIESQCEITFVKRL 136 (143)
Q Consensus 115 ------d----~~tL~dyGI~~g~tl~fv~rl 136 (143)
+ -.||+.|+|.||++|-++.+.
T Consensus 74 ~ts~~~~~~krLNTL~HY~V~dgatv~l~~~~ 105 (127)
T 3h6n_A 74 DTSVVEDGRKKLNTLAHYKIPEGASLAMSLID 105 (127)
T ss_dssp TTSCEETTEECCCBTTTTTCCTTCEEEEEECC
T ss_pred CcceecCceeEeccccccCCCCCCEEEEEEcc
Confidence 1 158999999999999998764
No 121
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=93.38 E-value=0.34 Score=33.95 Aligned_cols=73 Identities=12% Similarity=0.261 Sum_probs=54.9
Q ss_pred cEEEEEEe-CCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEe--eCCcccc--cccchhhh
Q psy2972 47 SIMCCIQA-DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLS--FDGIKLT--NEKSLLSE 121 (143)
Q Consensus 47 am~l~Vk~-~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Li--f~gkkL~--~d~~tL~d 121 (143)
..+|-||+ ||+.+.-.. ..++||.+|...|.... ... +..|.|+ |-.+.+. +.+.||++
T Consensus 13 ~t~IqIRlpdG~rl~~rF-~~~~tl~~v~~fV~~~~------~~~---------~~~f~L~t~fPrk~l~~~d~~~TL~e 76 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQF-PSDAPLEEARQFAAQTV------GNT---------YGNFSLATMFPRREFTREDYKRRLLD 76 (109)
T ss_dssp CEEEEEECSSSCEEEEEE-CTTSBHHHHHHHHHHHH------TTS---------SCSCEEECSSSCCBCCTTTTTSBTGG
T ss_pred cEEEEEECCCCCEEEEEe-CCCCCHHHHHHHHHhcc------CCC---------CCceEEEcCCCCcCCcccccCCCHHH
Confidence 57788854 599999999 88999999999999862 110 2344454 4566675 45789999
Q ss_pred hCCCCCCEEEEEee
Q psy2972 122 LGIESQCEITFVKR 135 (143)
Q Consensus 122 yGI~~g~tl~fv~r 135 (143)
.|+.+...|++...
T Consensus 77 lgL~psa~L~v~~~ 90 (109)
T 2dzk_A 77 LELAPSASVVLLPA 90 (109)
T ss_dssp GTCSSEEEEEEECC
T ss_pred CCCCCceEEEEEEC
Confidence 99999999988764
No 122
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=92.86 E-value=0.8 Score=31.00 Aligned_cols=79 Identities=13% Similarity=0.103 Sum_probs=46.8
Q ss_pred cCCcEEEEEEeC-------C-ceEEEEecCCCCcHHHHHHHHHHHHhHhHhh----cccccccccccccceEEEeeCCcc
Q psy2972 44 HGQSIMCCIQAD-------N-KKFDIVISPKNTRVSDLKRTIERQITMQMKR----KGLSKQISWRHVWKSYWLSFDGIK 111 (143)
Q Consensus 44 ~g~am~l~Vk~~-------g-~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~r----eg~~~~IsW~~vw~~~~Lif~gkk 111 (143)
|-.+|+|+|+.= | ....+.+ ++.+||.+|.+.+...+.-.... +|. +.......-+|+.
T Consensus 6 ~~~~~~v~V~~FA~lre~~g~~~~~~e~-~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~--------~~~~v~v~VNg~~ 76 (98)
T 1vjk_A 6 HHGSVKVKVKYFARFRQLAGVDEEEIEL-PEGARVRDLIEEIKKRHEKFKEEVFGEGYD--------EDADVNIAVNGRY 76 (98)
T ss_dssp ---CEEEEEEECTHHHHHHSSSEEEEEE-CTTCBHHHHHHHHHHHCGGGGGSCBCSSSC--------TTSSBEEEETTBC
T ss_pred ccCcEEEEEEEhHHHHHHhCCCeEEEEC-CCCCCHHHHHHHHHhHChhHHHHhhccccc--------cCCcEEEEECCEE
Confidence 345688888432 2 4578888 77799999999998864210000 000 0122334446655
Q ss_pred cccccchhhhhCCCCCCEEEEEeeec
Q psy2972 112 LTNEKSLLSELGIESQCEITFVKRLK 137 (143)
Q Consensus 112 L~~d~~tL~dyGI~~g~tl~fv~rlr 137 (143)
.. .+.-+++||+|.|..-+-
T Consensus 77 v~------~~~~L~dGDeV~i~ppv~ 96 (98)
T 1vjk_A 77 VS------WDEELKDGDVVGVFPPVS 96 (98)
T ss_dssp CC------TTCBCCTTCEEEEESCC-
T ss_pred CC------CCCCCCCCCEEEEECCCC
Confidence 52 256799999999986554
No 123
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=92.70 E-value=0.49 Score=37.92 Aligned_cols=90 Identities=9% Similarity=0.110 Sum_probs=53.7
Q ss_pred CCCCCCHHHHHhHHhhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEE
Q psy2972 27 LPQDVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWL 105 (143)
Q Consensus 27 lp~~~t~~ev~~~ial~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~L 105 (143)
.|+.+++.. +.-..++.+.+.| -+|| .+.+.| .+++|+.||=..|.+...+.. . .-|.|
T Consensus 6 ~~~~~~~~~----~~~~~~~~~~~~V~lldg-~~~~~v-~~~t~~~el~~~v~~~l~L~e-~-------------~~FgL 65 (314)
T 1h4r_A 6 IASRMSFSS----LKRKQPKTFTVRIVTMDA-EMEFNC-EMKWKGKDLFDLVCRTLGLRE-T-------------WFFGL 65 (314)
T ss_dssp -------------------CEEEEEEECSSC-EEEEEE-ETTCBHHHHHHHHHHHHTCCC-G-------------GGEEE
T ss_pred CCccccccc----ccCCCCCeeEEEEEeCCc-eEEEEe-CCCCcHHHHHHHHHHHhCCCC-C-------------ccceE
Confidence 455555433 3333588999999 8888 789999 888999999999999875432 1 24566
Q ss_pred ee--CCcc-cccccchhhhhCCCCCCEEEEEeee
Q psy2972 106 SF--DGIK-LTNEKSLLSELGIESQCEITFVKRL 136 (143)
Q Consensus 106 if--~gkk-L~~d~~tL~dyGI~~g~tl~fv~rl 136 (143)
.| +|.. -.+.+++|.+.+++.+....|..|.
T Consensus 66 ~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr~ 99 (314)
T 1h4r_A 66 QYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA 99 (314)
T ss_dssp EEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEE
T ss_pred EEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEEE
Confidence 65 3332 1345678888887777666554443
No 124
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=92.67 E-value=0.38 Score=34.61 Aligned_cols=72 Identities=19% Similarity=0.279 Sum_probs=54.8
Q ss_pred CcEEEEEEe-CCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEe--eCCccc--ccccchhh
Q psy2972 46 QSIMCCIQA-DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLS--FDGIKL--TNEKSLLS 120 (143)
Q Consensus 46 ~am~l~Vk~-~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Li--f~gkkL--~~d~~tL~ 120 (143)
...+|.||+ +|+.+.-.. ..++||.+|...|... +. -+..|.|+ |-.+.| .+.+.+|.
T Consensus 42 ~~t~IqIRlPdG~rl~~rF-~~~~tl~~V~~fV~~~--------~~--------~~~~F~L~t~fPrk~l~~~d~~~TL~ 104 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITL-PEQAKLLALVKHVQSK--------GY--------PNERFELLTNFPRRKLSHLDYDITLQ 104 (124)
T ss_dssp CEEEEEEECTTSCEEEEEE-ETTSCHHHHHHHHHHH--------HC--------CTTTEEEECSSSCCEETSSCSSSCTT
T ss_pred CcEEEEEECCCCCEEEEEe-CCCCCHHHHHHHHHhc--------CC--------CCCCeEEecCCCCcCCccCCCCCCHH
Confidence 357788865 589999999 8889999999999763 11 12456565 457777 45589999
Q ss_pred hhCCCCCCEEEEEe
Q psy2972 121 ELGIESQCEITFVK 134 (143)
Q Consensus 121 dyGI~~g~tl~fv~ 134 (143)
+.|+.+...|.+..
T Consensus 105 e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 105 EAGLCPQETVFVQE 118 (124)
T ss_dssp TTTCCSSBCCEEEE
T ss_pred HCCCCCceEEEEEE
Confidence 99999999998865
No 125
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=92.41 E-value=1 Score=30.93 Aligned_cols=77 Identities=12% Similarity=0.201 Sum_probs=48.2
Q ss_pred CcEEEEEEeCCceEEEEecCCCCcHHHH-HHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCC
Q psy2972 46 QSIMCCIQADNKKFDIVISPKNTRVSDL-KRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124 (143)
Q Consensus 46 ~am~l~Vk~~g~~~~V~V~~~~aTV~dL-K~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI 124 (143)
.+|+|+|+..+..+-|..-+.+.||.+| ++|+.++....+.... +|-+| ..|-+.|-.|.+.++.|.+- +
T Consensus 1 ~~MKvtV~fg~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~-----~~v~V---~~l~~~~ggiLD~DD~l~dV-l 71 (85)
T 2ns5_A 1 SEFKVTVCFGRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPN-----YWIQV---HRLEHGDGGILDLDDILCDV-A 71 (85)
T ss_dssp CCEEEEEEETTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTT-----SCEEE---EEEECSSSCEECTTSCHHHH-S
T ss_pred CccEEEEEECCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCC-----cEEEE---EEEEeCCCcEeCcccchhhh-c
Confidence 3799999888888888884455699998 5577776554444211 33332 12445343444567788776 5
Q ss_pred CCCCEEE
Q psy2972 125 ESQCEIT 131 (143)
Q Consensus 125 ~~g~tl~ 131 (143)
.|++.|.
T Consensus 72 dD~e~i~ 78 (85)
T 2ns5_A 72 DDKDRLV 78 (85)
T ss_dssp CTTEEEE
T ss_pred cCcceEE
Confidence 6666653
No 126
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=92.17 E-value=1.3 Score=32.48 Aligned_cols=88 Identities=9% Similarity=0.083 Sum_probs=49.2
Q ss_pred CcEEEEE-E---eCC------ceEEEEecCCCCcHHHHHHHHHHHHhH---hHhhcc-cccccccccccceEEEeeC---
Q psy2972 46 QSIMCCI-Q---ADN------KKFDIVISPKNTRVSDLKRTIERQITM---QMKRKG-LSKQISWRHVWKSYWLSFD--- 108 (143)
Q Consensus 46 ~am~l~V-k---~~g------~~~~V~V~~~~aTV~dLK~aI~~~~~~---~~~reg-~~~~IsW~~vw~~~~Lif~--- 108 (143)
++++|.| . ..+ ..++|.| -+-+||.+.|+.|-.++-- .|.+.. .....-||.= .......+
T Consensus 18 ~tLtL~vv~~~~~~~~~~~~~~~v~VkV-LdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g-~~~~~L~D~D~ 95 (126)
T 3kuz_A 18 GTVALNVVFEKIPENESADVCRNISVNV-LDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMG-TRQKELLDIDS 95 (126)
T ss_dssp CEEEEEEEECCCTTSSCSCSCCEEEEEE-ETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEET-TEEEEECSSCT
T ss_pred EEEEEEEEeeccCCCcCcCcCCceEeee-ecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecC-CCcceeeccCC
Confidence 3578888 5 222 4689999 7889999999998887620 011000 0112223220 11111111
Q ss_pred -Ccccccc---cchhhhhCCCCCCEEEEEee
Q psy2972 109 -GIKLTNE---KSLLSELGIESQCEITFVKR 135 (143)
Q Consensus 109 -gkkL~~d---~~tL~dyGI~~g~tl~fv~r 135 (143)
.+.+.++ -.||+.|+|.+|++|-++++
T Consensus 96 tS~~~e~~wkrLNTL~HY~V~Dgatlal~kk 126 (126)
T 3kuz_A 96 SSVILEDGITKLNTIGHYEISNGSTIKVFKK 126 (126)
T ss_dssp TCCBCTTSCBCCCBTGGGTCCTTCEEEEEEC
T ss_pred cceEecCCeeEeccccccCCCCCCEEEEeeC
Confidence 0111111 25899999999999988753
No 127
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=91.87 E-value=0.46 Score=34.21 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=55.8
Q ss_pred HHhhccCC-cEEEEEE-eCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEe--eCCccccc
Q psy2972 39 EMELLHGQ-SIMCCIQ-ADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLS--FDGIKLTN 114 (143)
Q Consensus 39 ~ial~~g~-am~l~Vk-~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Li--f~gkkL~~ 114 (143)
.+.+..++ ..+|-|| -||+.+.-.. ..++||.+|...|.... .+. -+..|.|+ |-.+.+.+
T Consensus 43 ~~~~d~~~~~t~IqIRlpdG~rl~~rF-~~~~tl~~v~~fV~~~~------~~~--------~~~~f~L~t~fPrk~l~d 107 (127)
T 1s3s_G 43 SILINEAEPTTNIQIRLADGGRLVQKF-NHSHRISDIRLFIVDAR------PAM--------AATSFVLMTTFPNKELAD 107 (127)
T ss_dssp HSCCCTTSCCCCEEEEETTTTEEEEEC-CSSCBHHHHHHHHHHHC------SGG--------GTSCEEEEETTTTEECCS
T ss_pred CccccCCCCcEEEEEECCCCCEEEEEe-CCCCCHHHHHHHHHHhC------cCC--------CCCCeEEecCCCCCCCCC
Confidence 34455544 5778884 5699999999 88899999999999862 111 12456665 45778877
Q ss_pred ccchhhhhCCCCCCEE
Q psy2972 115 EKSLLSELGIESQCEI 130 (143)
Q Consensus 115 d~~tL~dyGI~~g~tl 130 (143)
++.||.+.|+.+...|
T Consensus 108 ~~~TL~eagL~psavl 123 (127)
T 1s3s_G 108 ENQTLKEANLLNAVIV 123 (127)
T ss_dssp TTCBHHHHTCSSCEEE
T ss_pred CCCcHHHCCCcCceEE
Confidence 7899999999985443
No 128
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=91.28 E-value=0.86 Score=29.16 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=44.6
Q ss_pred cEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 47 SIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 47 am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
.|+|+|........+.+ +..+||.+|.+.+.- .. .......+|+.+..|. -+++
T Consensus 4 ~m~i~vNg~~~~~~~~~-~~~~tv~~Ll~~l~~------~~-------------~~v~vavN~~~v~~~~------~L~~ 57 (70)
T 1ryj_A 4 GMKFTVITDDGKKILES-GAPRRIKDVLGELEI------PI-------------ETVVVKKNGQIVIDEE------EIFD 57 (70)
T ss_dssp CEEEEEEETTEEEEEEE-SSCCBHHHHHHHTTC------CT-------------TTEEEEETTEECCTTS------BCCT
T ss_pred eEEEEEeCccCceeEEC-CCCCcHHHHHHHhCC------CC-------------CCEEEEECCEECCCcc------cCCC
Confidence 48888855454556788 777899999987632 11 2335677888775432 6999
Q ss_pred CCEEEEEeeec
Q psy2972 127 QCEITFVKRLK 137 (143)
Q Consensus 127 g~tl~fv~rlr 137 (143)
||+|-|..-.-
T Consensus 58 gD~V~ii~~V~ 68 (70)
T 1ryj_A 58 GDIIEVIRVIY 68 (70)
T ss_dssp TCEEEEEECTT
T ss_pred CCEEEEEeccc
Confidence 99999986543
No 129
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=89.72 E-value=0.9 Score=31.24 Aligned_cols=64 Identities=6% Similarity=0.007 Sum_probs=48.4
Q ss_pred CCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCccc
Q psy2972 45 GQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKL 112 (143)
Q Consensus 45 g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL 112 (143)
|++|+|++...|..+-+.| +++.+..+|.+.+.+.|.+. .+.+-.+.|+.=-...|.+.+..-|
T Consensus 4 ~~~vkvK~~~~gdi~~~~v-~~~i~~~~L~~kv~~~~~~~---~~~~f~lky~DEeGD~itisSd~EL 67 (89)
T 1vd2_A 4 GSQVRVKAYYRGDIMITHF-EPSISFEGLCNEVRDMCSFD---NEQLFTMKWIDEEGDPCTVSSQLEL 67 (89)
T ss_dssp SSCEEEEEESSSCEEEEEE-CTTCCHHHHHHHHHHHTTCC---SSCCEEEEECCSSSCCEECCSHHHH
T ss_pred CCeEEEEEEeCCeEEEEEC-CCCCCHHHHHHHHHHHhCCC---CCCeEEEEEECCCCCcccccCHHHH
Confidence 5679999988899999999 88999999999999988643 2233445665555566777666655
No 130
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.34 E-value=2.2 Score=29.62 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=56.5
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEee---CCcccccccchhhh
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSF---DGIKLTNEKSLLSE 121 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif---~gkkL~~d~~tL~d 121 (143)
++.++-| -.-.+..-|-| .+.++..+|=-+|=++..+.++ ++.|.- +++.| +-+++|.|
T Consensus 9 ~TvRLvVNy~~tQKtVvRV-SP~vpL~ellp~IC~Kcefdp~---------------~~~Ll~d~~~~e~L-dLskSLnd 71 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRV-SPHASLQELAPIICSKCEFDPL---------------HTLLLKDYQSQEPL-DLTKSLND 71 (91)
T ss_dssp SCEEEEEEETTTEEEEEEE-CSSSCTTTHHHHHHHHTTCCTT---------------SEEEESCSSCCCBC-CTTSCHHH
T ss_pred cEEEEEEeecCcceeEEEe-CCCCcHHHHHHHHhhcccCChh---------------hEEEecCCCCCccc-chhcchhh
Confidence 5788888 44467777888 8889999999999999877665 455554 35566 57899999
Q ss_pred hCCCCCCEEEEEeeeccc
Q psy2972 122 LGIESQCEITFVKRLKDK 139 (143)
Q Consensus 122 yGI~~g~tl~fv~rlr~k 139 (143)
|||+ +|+....-|+.
T Consensus 72 lgir---ELya~d~~~e~ 86 (91)
T 2daj_A 72 LGLR---ELYAMDVNRES 86 (91)
T ss_dssp HTCS---EEEEEECCCCC
T ss_pred hhhh---hhheecccccc
Confidence 9999 58777665543
No 131
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=87.93 E-value=1.6 Score=30.96 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=45.5
Q ss_pred cEEEEEEeC-------C--ceEEEEecC---CCCcHHHHHHHHHHHHh-HhHhh--cccccccccccccceEEEee-CCc
Q psy2972 47 SIMCCIQAD-------N--KKFDIVISP---KNTRVSDLKRTIERQIT-MQMKR--KGLSKQISWRHVWKSYWLSF-DGI 110 (143)
Q Consensus 47 am~l~Vk~~-------g--~~~~V~V~~---~~aTV~dLK~aI~~~~~-~~~~r--eg~~~~IsW~~vw~~~~Lif-~gk 110 (143)
+|+|+|+.. | +...|++ + ..+||.+|-..+.+.|. ..+.- +.+. -+.+.++| +|.
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel-~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~--------lr~~i~VlVN~~ 81 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVAL-PGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS--------VRPGILVLINDA 81 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEE-CCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSS--------CCSSEEEEESSS
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEe-CCCCCCCCHHHHHHHHHHHccchhHhhCccCCc--------ccCCeEEEECCe
Confidence 488888433 2 2467888 5 33799999999998761 11111 1110 01223343 332
Q ss_pred ccccccchh--hhhCCCCCCEEEEEeeecc
Q psy2972 111 KLTNEKSLL--SELGIESQCEITFVKRLKD 138 (143)
Q Consensus 111 kL~~d~~tL--~dyGI~~g~tl~fv~rlr~ 138 (143)
|-..| -++-+++||+|.|+.-+-|
T Consensus 82 ----di~~l~gldt~L~dGDeV~iip~vaG 107 (114)
T 1wgk_A 82 ----DWELLGELDYQLQDQDSILFISTLHG 107 (114)
T ss_dssp ----BHHHHCTTTCBCCSSEEEEEEECSCC
T ss_pred ----eeeccCCcCcCCCCCCEEEEeCCCCC
Confidence 11122 2467999999999987655
No 132
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=87.84 E-value=2.5 Score=33.28 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=50.0
Q ss_pred cEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEee---CCcc-cccccchhhh
Q psy2972 47 SIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSF---DGIK-LTNEKSLLSE 121 (143)
Q Consensus 47 am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif---~gkk-L~~d~~tL~d 121 (143)
+|.+.| -.|| .+.+.| .+++|+.||=.+|.+...+... .-|.|.| +|.. ..+.++++.+
T Consensus 1 ~i~~~V~l~d~-~~~~~v-~~~tt~~el~~~v~~~l~L~e~--------------~~FgL~~~~~~~~~~wLd~~~~l~~ 64 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAI-QPNTTGKQLFDQVVKTIGLREV--------------WFFGLQYQDTKGFSTWLKLNKKVTA 64 (294)
T ss_dssp CEEEEEEETTE-EEEEEE-CTTCBHHHHHHHHHHHHTCCCG--------------GGEEEEEEBTTSCEEECCSSSBGGG
T ss_pred CEEEEEEECCc-eEEEEE-CCCCcHHHHHHHHHHHcCCCCc--------------ceeEEEEECCCCceeecccccCHHh
Confidence 478889 7777 688999 8999999999999998654221 2466666 2321 2245677888
Q ss_pred hCCCCCCEEEEEee
Q psy2972 122 LGIESQCEITFVKR 135 (143)
Q Consensus 122 yGI~~g~tl~fv~r 135 (143)
.+++.+....|..|
T Consensus 65 q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 65 QDVRKESPLLFKFR 78 (294)
T ss_dssp SCBCCCSSEEEEEE
T ss_pred hccCCCCCEEEEEE
Confidence 77766665544433
No 133
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=84.86 E-value=3.6 Score=37.32 Aligned_cols=85 Identities=7% Similarity=0.162 Sum_probs=49.6
Q ss_pred CcEEEEE-EeC---CceEEEEecCCCCcHHHHHHHHHHHHh---HhHhhcc-cccccccccccceEEEeeCC--------
Q psy2972 46 QSIMCCI-QAD---NKKFDIVISPKNTRVSDLKRTIERQIT---MQMKRKG-LSKQISWRHVWKSYWLSFDG-------- 109 (143)
Q Consensus 46 ~am~l~V-k~~---g~~~~V~V~~~~aTV~dLK~aI~~~~~---~~~~reg-~~~~IsW~~vw~~~~Lif~g-------- 109 (143)
+.|+|.| -.+ ...++|.| -+-+||.+.|+.|-.++- -+.+|-. ..-..-||+==. -.++-..
T Consensus 232 ~~ltL~v~~~~~~~~~~i~vkV-LdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~-g~~iL~D~D~ts~~~ 309 (627)
T 3ig3_A 232 KTLTLHCVCPESEGSAQVPVKV-LNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRM-ARIILQDEDITTKIE 309 (627)
T ss_dssp CEEEEEEECTTTC--CEEEEEE-ETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSS-CEEEECSSSTTCCEE
T ss_pred eeEEEEEeccCCCCCCceeeEe-eccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCC-CceeeccCCcccccc
Confidence 3578888 433 36699999 888999999999988762 0111100 001112322000 0111111
Q ss_pred ---cccccccchhhhhCCCCCCEEEEEeee
Q psy2972 110 ---IKLTNEKSLLSELGIESQCEITFVKRL 136 (143)
Q Consensus 110 ---kkL~~d~~tL~dyGI~~g~tl~fv~rl 136 (143)
++| .||+.|+|.||++|-++.+.
T Consensus 310 ~~wkrL----NTL~HY~V~Dga~v~L~p~~ 335 (627)
T 3ig3_A 310 CDWKRV----NSLAHYQVTDGSLVALVPKQ 335 (627)
T ss_dssp TTEEEC----CBTTTTTCCTTCEEEEEEC-
T ss_pred CceeEe----cchhhcCCCCCceEEEEecc
Confidence 122 48999999999999998875
No 134
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=84.79 E-value=2.5 Score=33.79 Aligned_cols=77 Identities=12% Similarity=0.133 Sum_probs=50.3
Q ss_pred cCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeC---Cc-ccccccch
Q psy2972 44 HGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFD---GI-KLTNEKSL 118 (143)
Q Consensus 44 ~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~---gk-kL~~d~~t 118 (143)
..+.|.+.| -+||+..++.| ++.+|+.||=..|.++..+.. . .-|-|.|. |. ...+.+++
T Consensus 14 ~~~~~~~~V~lldgt~~~~~v-d~~tt~~el~~~v~~~l~L~e-~-------------~~FgL~~~~~~~~~~wLd~~k~ 78 (296)
T 3qij_A 14 LYFQGHCKVSLLDDTVYECVV-EKHAKGQDLLKRVCEHLNLLE-E-------------DYFGLAIWDNATSKTWLDSAKE 78 (296)
T ss_dssp ---CCEEEEECTTSCEEEEEC-CTTCBHHHHHHHHHHHHTCSS-G-------------GGEEEEEEEETTEEEECCTTSB
T ss_pred CCceEEEEEEccCCCEEEEEE-CCCCCHHHHHHHHHHHcCCCC-c-------------ceeEEEEEcCCCccchhccchh
Confidence 345799999 88999999999 899999999999999875432 1 13455542 21 22345677
Q ss_pred hhhhCCCCCCEEEEEee
Q psy2972 119 LSELGIESQCEITFVKR 135 (143)
Q Consensus 119 L~dyGI~~g~tl~fv~r 135 (143)
+.+.......+++|..+
T Consensus 79 i~~q~~~~~~~l~frvk 95 (296)
T 3qij_A 79 IKKQVRGVPWNFTFNVK 95 (296)
T ss_dssp HHHHC---CCEEEEEES
T ss_pred HHHhcCCCCcEEEEEEE
Confidence 77765444556666544
No 135
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=84.65 E-value=3.8 Score=37.23 Aligned_cols=86 Identities=15% Similarity=0.158 Sum_probs=48.4
Q ss_pred CcEEEEE-EeCC------ceEEEEecCCCCcHHHHHHHHHHHHh---HhHhhcc-ccccccccccc-ceEEEee------
Q psy2972 46 QSIMCCI-QADN------KKFDIVISPKNTRVSDLKRTIERQIT---MQMKRKG-LSKQISWRHVW-KSYWLSF------ 107 (143)
Q Consensus 46 ~am~l~V-k~~g------~~~~V~V~~~~aTV~dLK~aI~~~~~---~~~~reg-~~~~IsW~~vw-~~~~Lif------ 107 (143)
+.++|.| -.+| ..++|.| -+-+||.+.|+.|-.++- -+.+|-. ..-..-||.== .+..|.-
T Consensus 256 ~~ltL~v~~~~~~~~~~~~~i~VkV-LdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 256 RPLTLNALLAVGPGAGEAQGVPVKV-LDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp CEEEEEEECC-------CCCEEEEE-ETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred eeEEEEEeecCccccCCCCceeeEe-eccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccce
Confidence 3578887 4332 4599999 888999999999887751 0111100 00111232200 0111111
Q ss_pred --CC-cccccccchhhhhCCCCCCEEEEEeee
Q psy2972 108 --DG-IKLTNEKSLLSELGIESQCEITFVKRL 136 (143)
Q Consensus 108 --~g-kkL~~d~~tL~dyGI~~g~tl~fv~rl 136 (143)
+| ++| .||+.|+|.||++|-++.+.
T Consensus 335 ~~~~wkrL----NTL~HY~V~dga~v~L~p~~ 362 (644)
T 3hm6_X 335 VQGLWRRL----NTLQHYKVPDGATVALVPCL 362 (644)
T ss_dssp EETTEEEC----CBTTTTTCCTTCEEEEEEC-
T ss_pred ecCcceee----cchhhcCCCCCcEEEEEecc
Confidence 00 122 59999999999999998765
No 136
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=84.50 E-value=2.6 Score=37.34 Aligned_cols=76 Identities=13% Similarity=0.177 Sum_probs=52.6
Q ss_pred CCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeC---Cc-ccccccchh
Q psy2972 45 GQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFD---GI-KLTNEKSLL 119 (143)
Q Consensus 45 g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~---gk-kL~~d~~tL 119 (143)
|+.|.+.| -.|| .+.|.| .+++|+.||=..|.....+... .-|.|.|. |. ...+.+.++
T Consensus 2 ~k~i~v~V~llDg-t~e~~v-d~~tt~~ell~~V~~~LgL~e~--------------~~FGL~~~d~~~~~~WLd~~k~i 65 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAI-QQTTTGKQLFDQVVKTIGLREV--------------WFFGLQYTDSKGDLTWIKLYKKV 65 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEE-ETTCBHHHHHHHHHHHHTCCCG--------------GGEEEEEEBTTSCEEECCTTSBG
T ss_pred CceEEEEEEeCCC-eEEEEE-CCCCCHHHHHHHHHHHcCCCCc--------------cceeEEEEecCcchhHhhccccH
Confidence 57899999 7787 688999 8889999999999998654211 24666663 21 223456788
Q ss_pred hhhCCCCCCEEEEEeee
Q psy2972 120 SELGIESQCEITFVKRL 136 (143)
Q Consensus 120 ~dyGI~~g~tl~fv~rl 136 (143)
.+.+++.+....|..|.
T Consensus 66 ~~q~~~~~~~~~L~FRv 82 (575)
T 2i1j_A 66 MQQDVKKENPLQFKFRA 82 (575)
T ss_dssp GGSCBCCCSSEEEEEEE
T ss_pred HHhcccCCCCeEEEEEE
Confidence 88887777766554443
No 137
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=84.41 E-value=0.57 Score=30.74 Aligned_cols=64 Identities=11% Similarity=0.209 Sum_probs=42.3
Q ss_pred EEEEEEeCCce-EEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCIQADNKK-FDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~Vk~~g~~-~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|+|+|++.|.. -.+++ +..+||.||=+.+.- + ++.....-+|+.+..|. +.+
T Consensus 1 M~v~Vkl~g~~~~~~ev-~~g~Tv~dLL~~Lgl-----------~--------~~~VvV~vNG~~v~~d~-------~l~ 53 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAV-DDDGTYADLVRAVDL-----------S--------PHEVTVLVDGRPVPEDQ-------SVE 53 (74)
T ss_dssp CEEEEECSSSSEEEEEC-STTCSHHHHHHTTCC-----------C--------SSCCCEECCCCCCCTTS-------SSC
T ss_pred CEEEEEEeCccceeEEc-CCCCcHHHHHHHcCC-----------C--------cceEEEEECCEECCHHH-------CCC
Confidence 78888766653 45788 888999998654432 1 12334555888775544 446
Q ss_pred CCEEEEEeeecc
Q psy2972 127 QCEITFVKRLKD 138 (143)
Q Consensus 127 g~tl~fv~rlr~ 138 (143)
||+|.++.-..|
T Consensus 54 GD~VeIv~~V~G 65 (74)
T 2l32_A 54 VDRVKVLRLIKG 65 (74)
T ss_dssp CCCEEECSSCSC
T ss_pred CCEEEEEEeecc
Confidence 999998876554
No 138
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=84.39 E-value=3.1 Score=27.18 Aligned_cols=66 Identities=8% Similarity=0.020 Sum_probs=40.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHHhHhH----hhcccccccccccccce-EEEeeCCcccccccchhhhhCCCCCCEEE
Q psy2972 57 KKFDIVISPKNTRVSDLKRTIERQITMQM----KRKGLSKQISWRHVWKS-YWLSFDGIKLTNEKSLLSELGIESQCEIT 131 (143)
Q Consensus 57 ~~~~V~V~~~~aTV~dLK~aI~~~~~~~~----~reg~~~~IsW~~vw~~-~~Lif~gkkL~~d~~tL~dyGI~~g~tl~ 131 (143)
....+.+ +..+||.+|.+++...+.--. ..+|. ++. ....-+|+... . ++-+++||+|.
T Consensus 18 ~~~~~~~-~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~---------l~~~~~v~VN~~~v~-~-----~~~l~~gDeV~ 81 (89)
T 3po0_A 18 RTVRVDV-DGDATVGDALDALVGAHPALESRVFGDDGE---------LYDHINVLRNGEAAA-L-----GEATAAGDELA 81 (89)
T ss_dssp SEEEEEC-CTTCBHHHHHHHHHHHCGGGHHHHBCTTSC---------BCTTSEEEETTEECC-T-----TSBCCTTCEEE
T ss_pred CeEEEEC-CCCCcHHHHHHHHHHHCcHHHHHHhccCCc---------ccccEEEEECCEECC-C-----CcccCCCCEEE
Confidence 5678888 777899999999988753110 00110 112 23333565542 2 55699999999
Q ss_pred EEeeecc
Q psy2972 132 FVKRLKD 138 (143)
Q Consensus 132 fv~rlr~ 138 (143)
|..-+-|
T Consensus 82 i~Ppv~G 88 (89)
T 3po0_A 82 LFPPVSG 88 (89)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 9875543
No 139
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=83.51 E-value=5.8 Score=26.77 Aligned_cols=84 Identities=7% Similarity=0.010 Sum_probs=45.2
Q ss_pred CcEEEEEEeCCce------EEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceE-------EEeeCCccc
Q psy2972 46 QSIMCCIQADNKK------FDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSY-------WLSFDGIKL 112 (143)
Q Consensus 46 ~am~l~Vk~~g~~------~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~-------~Lif~gkkL 112 (143)
..|+|+|+.-+.. -.+++ + .+||.||.+++...+.-. ++.. ..+..+...+ ....+|+..
T Consensus 2 ~mm~v~V~~fa~lr~~~g~~~~~l-~-~~tv~~ll~~L~~~~p~l--~~~l---~~~g~l~~~v~~~~~~~~v~VNg~~v 74 (99)
T 2l52_A 2 HMAEVKVKLFANLREAAGTPELPL-S-GEKVIDVLLSLTDKYPAL--KYVI---FEKGDEKSEILILCGSINILINGNNI 74 (99)
T ss_dssp CCCEEEEEECTHHHHHHSSSEEEE-E-CSSHHHHHHHHHHHCGGG--TTTS---BCSCCTTSSCCCBCSSCEEEETTSCG
T ss_pred CceEEEEEEeHHHHHHhCCCeEEE-e-CCcHHHHHHHHHHHChhH--HHHH---hcccccccceeccccccEEEECCEEc
Confidence 3577777544321 24566 4 689999999998865210 0000 0000011122 455566544
Q ss_pred ccccchhhhhCCCCCCEEEEEeeecc
Q psy2972 113 TNEKSLLSELGIESQCEITFVKRLKD 138 (143)
Q Consensus 113 ~~d~~tL~dyGI~~g~tl~fv~rlr~ 138 (143)
.. ..=.++-+++||+|.|..-+-|
T Consensus 75 ~~--~~~~~~~L~~gD~V~i~ppv~G 98 (99)
T 2l52_A 75 RH--LEGLETLLKDSDEIGILPPVSG 98 (99)
T ss_dssp GG--TTSTTSCCCTTEEEEEECCCSC
T ss_pred cc--cCCCCCCCCCCCEEEEECCCCC
Confidence 21 1112456999999999876543
No 140
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=81.14 E-value=9.3 Score=25.05 Aligned_cols=69 Identities=4% Similarity=-0.031 Sum_probs=38.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhHhHh---hc--ccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEE
Q psy2972 59 FDIVISPKNTRVSDLKRTIERQITMQMK---RK--GLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFV 133 (143)
Q Consensus 59 ~~V~V~~~~aTV~dLK~aI~~~~~~~~~---re--g~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv 133 (143)
-.+.+ +.+||.+|.+++...+.--.. .+ ++ .+...+...-+|+-.. ...- .+.-+++||+|.|.
T Consensus 19 ~~~~~--~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g-------~~~~~~~v~VN~~~v~-~~~~-~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 19 KSVSA--SGDTLGAVISDLEANYSGISERLMDPSSPG-------KLHRFVNIYVNDEDVR-FSGG-LATAIADGDSVTIL 87 (93)
T ss_dssp SEEEE--CCSBHHHHHHHHHHHSTTHHHHHBCSSSTT-------SBCTTEEEEETTEEGG-GTTG-GGCBCCTTCEEEEE
T ss_pred eEEec--CCCCHHHHHHHHHHHChhHHHHHhccccCC-------cccCCEEEEECCEEcc-CcCC-CCcCCCCCCEEEEE
Confidence 34666 458999999999987531100 00 11 0112233444665442 1111 24569999999998
Q ss_pred eeecc
Q psy2972 134 KRLKD 138 (143)
Q Consensus 134 ~rlr~ 138 (143)
.-+-|
T Consensus 88 Ppv~G 92 (93)
T 3dwg_C 88 PAVAG 92 (93)
T ss_dssp ECCTT
T ss_pred CCCCC
Confidence 76554
No 141
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.00 E-value=4.7 Score=26.22 Aligned_cols=54 Identities=9% Similarity=0.207 Sum_probs=40.9
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.+ +.+|.. +.++ .-.+..+-.+|++..
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~g~~~g~afV---~f~~~~~A~~A~~~l 75 (103)
T 2d9p_A 19 YVKNLDDGIDDERLRKAFS-PFGTITSAKVMMEGGRSKGFGFV---CFSSPEEATKAVTEM 75 (103)
T ss_dssp EEECCCTTCCHHHHHHTTT-TTSCEEEEEEEECSSSEEEEEEE---EESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcCCCCcCEEEEE---EECCHHHHHHHHHHh
Confidence 3568999999999998887 7898888888 555554 4432 346888888888863
No 142
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=79.91 E-value=6.7 Score=32.01 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=64.0
Q ss_pred CCCHHH--HHhHHhhccCC-cEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEE
Q psy2972 30 DVTVEE--IKSEMELLHGQ-SIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWL 105 (143)
Q Consensus 30 ~~t~~e--v~~~ial~~g~-am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~L 105 (143)
.-|++. +.+..+++++. .+.+.| -.||+...+.| .+++|+.||=..|.++..+.. +.-|.|
T Consensus 65 ~~~l~~y~~~~~~~l~~~~~~~~~~V~l~dg~~~~~~v-d~~tt~~el~~~v~~~l~L~e--------------~~~FgL 129 (371)
T 3ivf_A 65 GKALDYYMLRNGDTMEYRKKQRPLKIRMLDGTVKTIMV-DDSKTVTDMLMTICARIGITN--------------HDEYSL 129 (371)
T ss_dssp TSBGGGGTCCTTCEEEEEECEEEEEEECTTSCEEEEEE-ETTSBHHHHHHHHHHHTTCSC--------------GGGEEE
T ss_pred CCCHHHhCCCCCceeeccCceeEEEEECcCCCEEEEEE-CCCCCHHHHHHHHHHHcCCCC--------------ccccEE
Confidence 347776 55566777774 688899 88899999999 889999999999999764422 124666
Q ss_pred eeCC---------cccccccchhhhhCCCCCCEEEEEee
Q psy2972 106 SFDG---------IKLTNEKSLLSELGIESQCEITFVKR 135 (143)
Q Consensus 106 if~g---------kkL~~d~~tL~dyGI~~g~tl~fv~r 135 (143)
.+.. .-| +-++++.+.|+....+++|..+
T Consensus 130 ~~~~~~~~~~~~~~wL-~~~k~l~~q~~~~~~~l~frvK 167 (371)
T 3ivf_A 130 VRELMEEKKDDELNWL-DHGRTLREQGVEEHETLLLRRK 167 (371)
T ss_dssp ECCC----------CC-CTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEecccccchHHHHH-hcCchhHhhCCCCCceEEEEEE
Confidence 6532 233 3466777778777778887544
No 143
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=78.73 E-value=8.1 Score=24.89 Aligned_cols=67 Identities=12% Similarity=0.163 Sum_probs=38.7
Q ss_pred EEEecCCCCcHHHHHHHHHHHHh-HhHh----hcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEEe
Q psy2972 60 DIVISPKNTRVSDLKRTIERQIT-MQMK----RKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVK 134 (143)
Q Consensus 60 ~V~V~~~~aTV~dLK~aI~~~~~-~~~~----reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~ 134 (143)
.+++ +..+||.+|.+++...+. +... .+| +........+|+.... ..-.+.-+++||+|.|..
T Consensus 18 ~~~~-~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g---------~~~~v~v~vN~~~v~~--~~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETF-NGISKISELLERLKVEYGSEFTKQMYDGNN---------LFKNVIILVNGNNITS--MKGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEE-SSCCBHHHHHHHHHHHSCHHHHHHHCCSSC---------STTTCEEEESSSBGGG--TCSSSCBCCTTCEEEEEC
T ss_pred EEEc-CCCCcHHHHHHHHHHHCcchhhhccccccC---------cCcceEEEECCEEccc--cCCCCcCCCCCCEEEEeC
Confidence 4567 556899999999988642 1110 011 0123345556765521 111244699999999987
Q ss_pred eecc
Q psy2972 135 RLKD 138 (143)
Q Consensus 135 rlr~ 138 (143)
-+-|
T Consensus 86 pv~G 89 (90)
T 2g1e_A 86 PVAG 89 (90)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 5543
No 144
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=78.02 E-value=0.89 Score=31.73 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=42.0
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccc-c-ceEEEeeCC-cccc-----cccchhhhhCCCCCC
Q psy2972 57 KKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHV-W-KSYWLSFDG-IKLT-----NEKSLLSELGIESQC 128 (143)
Q Consensus 57 ~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~v-w-~~~~Lif~g-kkL~-----~d~~tL~dyGI~~g~ 128 (143)
...++.| .+++|+.||=+.+.+...++.. .+.|+ +. = +.--|+..+ ..|. +-.++|.+.|+.+|+
T Consensus 5 ~~~~l~v-~~~~TL~~lid~L~~~p~~qlk----~PSlt--t~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ 77 (98)
T 1y8x_B 5 LPQNIQF-SPSAKLQEVLDYLTNSASLQMK----SPAIT--ATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQ 77 (98)
T ss_dssp CCCCEEC-CTTCBHHHHHHHHHHCTTCCCS----SCEEE--EEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTC
T ss_pred CcEEEEE-CCchhHHHHHHHHHhChHhhcc----CCeee--eecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCC
Confidence 3567888 8889999999888884333222 12121 00 0 011233333 1221 135789999999999
Q ss_pred EEEEEe
Q psy2972 129 EITFVK 134 (143)
Q Consensus 129 tl~fv~ 134 (143)
+|++..
T Consensus 78 ei~VtD 83 (98)
T 1y8x_B 78 ELAVAD 83 (98)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 998753
No 145
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=76.93 E-value=4.6 Score=27.28 Aligned_cols=66 Identities=17% Similarity=0.121 Sum_probs=42.2
Q ss_pred cEEEEEEeCCceEEEEecCCC-CcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCC
Q psy2972 47 SIMCCIQADNKKFDIVISPKN-TRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIE 125 (143)
Q Consensus 47 am~l~Vk~~g~~~~V~V~~~~-aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~ 125 (143)
.|+| +.+|+.+ ++ +.. +||.||-+.+.- .. +......+|+.+. .....+.-++
T Consensus 20 ~M~I--~vNGe~~--el-~~~~~Tv~dLL~~L~~------~~-------------~~vaVavNg~iV~--~~~~~~~~L~ 73 (87)
T 1tyg_B 20 RHML--QLNGKDV--KW-KKDTGTIQDLLASYQL------EN-------------KIVIVERNKEIIG--KERYHEVELC 73 (87)
T ss_dssp --CE--EETTEEE--CC-SSSCCBHHHHHHHTTC------TT-------------SCCEEEETTEEEC--GGGTTTSBCC
T ss_pred ceEE--EECCEEE--EC-CCCCCcHHHHHHHhCC------CC-------------CCEEEEECCEECC--hhhcCCcCCC
Confidence 4544 4567744 45 565 899999887632 11 2335666887763 4455567799
Q ss_pred CCCEEEEEeeecc
Q psy2972 126 SQCEITFVKRLKD 138 (143)
Q Consensus 126 ~g~tl~fv~rlr~ 138 (143)
+||+|-|+.-+-|
T Consensus 74 dGD~Vei~~~V~G 86 (87)
T 1tyg_B 74 DRDVIEIVHFVGG 86 (87)
T ss_dssp SSSEEEEEEECCC
T ss_pred CCCEEEEEccccc
Confidence 9999999876543
No 146
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=76.83 E-value=2.9 Score=26.65 Aligned_cols=59 Identities=8% Similarity=0.186 Sum_probs=35.1
Q ss_pred EEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEEeeecc
Q psy2972 60 DIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVKRLKD 138 (143)
Q Consensus 60 ~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~rlr~ 138 (143)
++++ +.+||.||.+++.... + |+.+.......-+|+... + .+.-+++||+|.|..-.-|
T Consensus 15 ~~e~--~~~tv~~ll~~L~~~~-------~------l~~~l~~~~vavN~~~v~-~----~~~~l~~gDeV~i~PpvsG 73 (74)
T 3rpf_C 15 NFFI--KANDLKELRAILQEKE-------G------LKEWLGVCAIALNDHLID-N----LNTPLKDGDVISLLPPVCG 73 (74)
T ss_dssp CEEE--ECSSHHHHHHHHHTCT-------T------TTTTTTTCEEEESSSEEC-C----TTCCCCTTCEEEEECCBCC
T ss_pred EEee--CCCcHHHHHHHHHHCc-------C------HHHHhhccEEEECCEEcC-C----CCcCCCCCCEEEEECCCCC
Confidence 3555 4479999999997631 1 111112233344665532 2 2456999999999876544
No 147
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=76.23 E-value=11 Score=23.45 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=40.3
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.+ +.++ .-.+..+-.+|++..
T Consensus 10 ~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV---~f~~~~~A~~A~~~l 68 (87)
T 3bs9_A 10 FVGDLSPEITTAAIAAAFA-PFGRISDARVVKDMATGKSKGYGFV---SFFNKWDAENAIQQM 68 (87)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEE---EESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCccceEEEE---EECCHHHHHHHHHHc
Confidence 3568999999999999987 7898778888 53 4544 3332 346888988888863
No 148
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=75.50 E-value=13 Score=32.00 Aligned_cols=50 Identities=20% Similarity=0.326 Sum_probs=41.7
Q ss_pred CCCHHHHHhHHhhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhH
Q psy2972 30 DVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITM 83 (143)
Q Consensus 30 ~~t~~ev~~~ial~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~ 83 (143)
.++..|+.+ +..++.+.+.| -.||....|.| ...+|+.||=..|.++..+
T Consensus 202 ~Ps~~Ei~a---~~~~~~~~~~V~l~dg~~~~~~v-~~~tt~~el~~~v~~~lgL 252 (555)
T 3au4_A 202 VPSRDEIEA---LIHRQEMTSTVYCHGGGSCKITI-NSHTTAGEVVEKLIRGLAM 252 (555)
T ss_dssp CCCHHHHHH---HHTTCCEEEEEEETTSCEEEEEE-CTTCBHHHHHHHHHHHTTC
T ss_pred CCCHHHHHH---HHhCCCcceEEEecCCCeEEEEe-CCCCcHHHHHHHHHHHcCC
Confidence 347777765 45577899999 89999999999 9999999999999997643
No 149
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=74.02 E-value=6.4 Score=28.81 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=37.3
Q ss_pred CCCcHHHHHHHHHHHHhHhHhhccccccccccccc--ceEEEeeCCcccccccchhhhhCCCCCCEEEEEe
Q psy2972 66 KNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVW--KSYWLSFDGIKLTNEKSLLSELGIESQCEITFVK 134 (143)
Q Consensus 66 ~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw--~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~ 134 (143)
..+|..+|=+.++.++.+.. -|| |- .+.+|+|+=--=.+-.++|.+.||++|+.|++..
T Consensus 18 ~~~TL~dLV~~l~~~~gy~~-------eiS---V~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 18 NKMKLSDFVVLIREKYSYPQ-------DIS---LLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HHCBHHHHHHHHHHHHTCCS-------SEE---EEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred cccCHHHHHHHHHHhcCCCC-------cEE---EEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 44899999888888764321 122 11 1234555321111236899999999999999875
No 150
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=73.87 E-value=13 Score=23.29 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=40.5
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.+ +.+|..--+-. -.-.+..+..+|++.-
T Consensus 12 ~V~nlp~~~t~~~l~~~f~-~~G~v~~~~i~~~~g~~~g~af-V~f~~~~~a~~a~~~l 68 (92)
T 2dgv_A 12 FVRNLPFDFTWKMLKDKFN-ECGHVLYADIKMENGKSKGCGV-VKFESPEVAERACRMM 68 (92)
T ss_dssp EECSCCTTCCHHHHHHHHH-TTSCEEEEEEEESSSCEEEEEE-EEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEccCCCcceEEE-EEECCHHHHHHHHHHh
Confidence 4568999999999998876 4788888888 65555422222 2346888999988863
No 151
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=73.10 E-value=5.2 Score=25.21 Aligned_cols=60 Identities=8% Similarity=0.123 Sum_probs=39.0
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEEeee
Q psy2972 57 KKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVKRL 136 (143)
Q Consensus 57 ~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~rl 136 (143)
+..++.+ +..+||.||.+++...+ ++ |+.+ .+...-+|+.... +.-+++||+|.|..-+
T Consensus 16 ~~~~~~~-~~~~tv~~ll~~l~~~~---p~---------~~~v--~~~v~vNg~~v~~------~~~L~~gD~V~i~ppv 74 (77)
T 2q5w_D 16 AQEDIVL-EQALTVQQFEDLLFERY---PQ---------INNK--KFQVAVNEEFVQK------SDFIQPNDTVALIPPV 74 (77)
T ss_dssp SEEECCC-SSCEEHHHHHHHHHHHC---GG---------GTTC--CCEEEETTEEECT------TSEECTTCEEEEECSC
T ss_pred CEEEEEC-CCCCCHHHHHHHHHHHC---cc---------hhcc--eEEEEECCEECCC------CCCcCCCCEEEEECCC
Confidence 3466777 67789999999987753 11 1112 1245557766532 3569999999997654
Q ss_pred c
Q psy2972 137 K 137 (143)
Q Consensus 137 r 137 (143)
-
T Consensus 75 ~ 75 (77)
T 2q5w_D 75 S 75 (77)
T ss_dssp C
T ss_pred C
Confidence 3
No 152
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=71.85 E-value=14 Score=24.69 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=19.5
Q ss_pred ceEEEEecC--CCCcHHHHHHHHHHHH
Q psy2972 57 KKFDIVISP--KNTRVSDLKRTIERQI 81 (143)
Q Consensus 57 ~~~~V~V~~--~~aTV~dLK~aI~~~~ 81 (143)
+...+.+ + +.+||.+|...+.+.+
T Consensus 20 ~~~~~~l-~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 20 RVHKIKM-DKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp CEEEEEE-CSCSCCBHHHHHHHHHHHT
T ss_pred cEEEEec-CCCCCCcHHHHHHHHHHHC
Confidence 4577888 6 6789999999998865
No 153
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=71.68 E-value=14 Score=24.76 Aligned_cols=54 Identities=15% Similarity=0.324 Sum_probs=41.2
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-++|....+ .+|.-..+.| +..+.+ |-++ .-.+..+-.+||+..
T Consensus 9 fV~nLp~~~te~~L~~~F~-~~G~v~~v~i~~d~~~~kg~afV---~f~~~~~A~~Ai~~l 65 (115)
T 4f25_A 9 FIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDENGSKGYGFV---HFETQEAAERAIEKM 65 (115)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEETTEEEEEEEE---EESCHHHHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHHHh-ccCCEEEEEEeecCCCCCceEEE---EECCHHHHHHHHHHc
Confidence 4568999999999998886 6898888888 655543 5443 346889999999873
No 154
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=71.32 E-value=14 Score=24.31 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=39.8
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.. +.++ .-.+..+..+|++.
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV---~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 19 FVGDLSPEITTEDIKAAFA-PFGRISDARVVKDMATGKSKGYGFV---SFFNKWDAENAIQQ 76 (115)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEE---EESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEE---EECCHHHHHHHHHH
Confidence 3568999999999999888 8898777777 43 4444 4443 34688888888876
No 155
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=71.14 E-value=11 Score=23.19 Aligned_cols=62 Identities=5% Similarity=0.080 Sum_probs=38.4
Q ss_pred EEEEEEe-CCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCC
Q psy2972 48 IMCCIQA-DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIES 126 (143)
Q Consensus 48 m~l~Vk~-~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~ 126 (143)
|.++|+. +|+. ..+ +..+|+.||-+.+...+ ... ......+|+... - ++-+++
T Consensus 1 m~i~i~~p~g~~--~~~-~~g~T~~dla~~i~~~l----~~~-------------~vaa~vNg~lvd-l-----~~~L~~ 54 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRL-PQGATALDFAYSLHSDL----GDH-------------CIGAKVNHKLVP-L-----SYVLNS 54 (73)
T ss_dssp CCEEEECTTCCE--EEE-CTTCBHHHHHHHHCSHH----HHT-------------EEEEEETTEECC-T-----TCBCCS
T ss_pred CeEEEEcCCCCE--EEc-CCCCcHHHHHHHHhhcc----ccc-------------eEEEEECCEEeC-C-----CcCcCC
Confidence 6677755 5775 556 67799999988774322 111 112334675542 2 356788
Q ss_pred CCEEEEEee
Q psy2972 127 QCEITFVKR 135 (143)
Q Consensus 127 g~tl~fv~r 135 (143)
|+.|-|+..
T Consensus 55 ~~~Veivt~ 63 (73)
T 2kmm_A 55 GDQVEVLSS 63 (73)
T ss_dssp SSBEEEEEC
T ss_pred CCEEEEEEC
Confidence 999988754
No 156
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=70.65 E-value=15 Score=24.22 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=40.0
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.| +. +|.. +.++ .-.+..+-.+|++..
T Consensus 29 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV---~f~~~~~a~~A~~~l 87 (115)
T 2cpz_A 29 FIYHLPQEFGDQDLLQMFM-PFGNVVSAKVFIDKQTNLSKCFGFV---SYDNPVSAQAAIQSM 87 (115)
T ss_dssp EEESCCSSCCHHHHHHHHG-GGSCCSEEEEEECSSSCSEEEEEEE---ECSSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCCcCccEEE---EECCHHHHHHHHHHc
Confidence 3568999999999999888 7888767777 43 4544 4443 346899999998773
No 157
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=70.44 E-value=15 Score=24.12 Aligned_cols=54 Identities=20% Similarity=0.347 Sum_probs=39.8
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-E--eCCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-Q--ADNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k--~~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-++|....+ .+|.-..+.+ + .+|.+ +.++ .-.+..+-.+|++.-
T Consensus 23 fV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~afV---~f~~~~~A~~Ai~~l 81 (99)
T 4fxv_A 23 IVNYLPQNMTQDELRSLFS-SIGEVESAKLIRDKVAGHSLGYGFV---NYVTAKDAERAINTL 81 (99)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEE---EESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEeEeeecCCCCcccccEEE---EECCHHHHHHHHHHh
Confidence 4568999999999998886 6898777777 4 33555 4432 236888999998873
No 158
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=70.33 E-value=11 Score=26.43 Aligned_cols=33 Identities=9% Similarity=0.321 Sum_probs=23.0
Q ss_pred CCcEEEEE-EeCCce--EEEEecCCCCcHHHHHHHHHHHHh
Q psy2972 45 GQSIMCCI-QADNKK--FDIVISPKNTRVSDLKRTIERQIT 82 (143)
Q Consensus 45 g~am~l~V-k~~g~~--~~V~V~~~~aTV~dLK~aI~~~~~ 82 (143)
|++|++++ +.++.. ++|+| +-.+++.++.+.+.
T Consensus 1 ~~~M~v~~e~~~~~~~~l~v~v-----~~~~~~~~~~~~~~ 36 (121)
T 1p9y_A 1 GSHMQVSVETTQGLGRRVTITI-----AADSIETAVKSELV 36 (121)
T ss_dssp ---CEEEEEECSTTEEEEEEEE-----CHHHHHHHHHHHHH
T ss_pred CCcceEEEEECCCcEEEEEEEE-----CHHHHHHHHHHHHH
Confidence 67899999 888765 66666 55677788877765
No 159
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=69.54 E-value=3.1 Score=27.35 Aligned_cols=64 Identities=9% Similarity=0.120 Sum_probs=41.4
Q ss_pred EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEE
Q psy2972 53 QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITF 132 (143)
Q Consensus 53 k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~f 132 (143)
+.+|+.+++.. +...||.+|-+.+.- . | .+......+|..+. .....++-+++||.|-+
T Consensus 4 ~vNGe~~e~~~-~~~~Tl~~LL~~l~~----~-----------~---~~~vAVavNg~iVp--r~~~~~~~L~dGD~IEI 62 (78)
T 2k5p_A 4 TVNGKPSTVDG-AESLNVTELLSALKV----A-----------Q---AEYVTVELNGEVLE--REAFDATTVKDGDAVEF 62 (78)
T ss_dssp EETTEEEECSS-CSCEEHHHHHHHHTC----S-----------C---TTTCCEEETTEECC--TTHHHHCEECSSBCEEE
T ss_pred EECCEEEEcCC-CCCCcHHHHHHHcCC----C-----------C---CCcEEEEECCEECC--hHHcCcccCCCCCEEEE
Confidence 44677554421 166899999775532 1 1 11235777888874 56777788999999988
Q ss_pred Eeeec
Q psy2972 133 VKRLK 137 (143)
Q Consensus 133 v~rlr 137 (143)
+.-.-
T Consensus 63 v~~Vg 67 (78)
T 2k5p_A 63 LYFMG 67 (78)
T ss_dssp CCCCC
T ss_pred Eeeec
Confidence 76554
No 160
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.78 E-value=18 Score=23.25 Aligned_cols=54 Identities=15% Similarity=0.061 Sum_probs=40.4
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee-CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA-DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~-~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++-.+|....+.| +. +|.+ +.++ .-.+..+-.+|++.
T Consensus 13 ~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV---~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 13 FVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFV---KFTDELEQKRALTE 70 (104)
T ss_dssp EEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEE---EESCHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEE---EECCHHHHHHHHHH
Confidence 456899999999999988866898777777 43 4544 4443 34688888888876
No 161
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=67.95 E-value=18 Score=25.15 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=31.3
Q ss_pred CcEEEEEEeC--------CceEEEEecCCCCcHHHHHHHHHHHHhHh
Q psy2972 46 QSIMCCIQAD--------NKKFDIVISPKNTRVSDLKRTIERQITMQ 84 (143)
Q Consensus 46 ~am~l~Vk~~--------g~~~~V~V~~~~aTV~dLK~aI~~~~~~~ 84 (143)
++|+|.|..+ +..+.+.| +++.+..+|...|.+++.+.
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V-~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLV-EKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEE-CTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEe-cCCCCHHHHHHHHHHHHcCC
Confidence 4688999433 45699999 99999999999999999764
No 162
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=67.93 E-value=5.5 Score=24.77 Aligned_cols=62 Identities=6% Similarity=0.142 Sum_probs=40.1
Q ss_pred EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEE
Q psy2972 53 QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITF 132 (143)
Q Consensus 53 k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~f 132 (143)
+.+|+.+ .+ +..+||.+|.+.+.. .+ .......+|+... .....+.-+++||+|.|
T Consensus 4 ~vNg~~~--~~-~~~~tv~~ll~~l~~------~~-------------~~v~vavN~~~v~--~~~~~~~~L~~gD~v~i 59 (66)
T 1f0z_A 4 LFNDQAM--QC-AAGQTVHELLEQLDQ------RQ-------------AGAALAINQQIVP--REQWAQHIVQDGDQILL 59 (66)
T ss_dssp EESSCEE--CC-CTTCCHHHHHHHHTC------CC-------------SSEEEEETTEEEC--HHHHTTCCCCTTEEECE
T ss_pred EECCEEE--Ec-CCCCcHHHHHHHcCC------CC-------------CCEEEEECCEECC--chhcCCcCCCCCCEEEE
Confidence 4567654 45 667899999887632 11 2334556776663 33444567999999999
Q ss_pred Eeeecc
Q psy2972 133 VKRLKD 138 (143)
Q Consensus 133 v~rlr~ 138 (143)
+.-.-|
T Consensus 60 ~~~V~G 65 (66)
T 1f0z_A 60 FQVIAG 65 (66)
T ss_dssp EESCCC
T ss_pred Eeeccc
Confidence 875543
No 163
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=67.65 E-value=17 Score=23.09 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=38.4
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeC---C--ce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QAD---N--KK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~---g--~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.-..+.+ +.. | .. +.++ .-.+..+-.+|++.
T Consensus 9 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~gt~~~~g~afV---~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 9 FIKNLNFSTTEETLKGVFS-KVGAIKSCTISKKKNKAGVLLSMGFGFV---EYKKPEQAQKALKQ 69 (98)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEEECTTCCEEEEEEEEE---EESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCcCcccEEEE---EECCHHHHHHHHHH
Confidence 4568999999999998887 7888777777 432 2 33 4443 23688888888876
No 164
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=67.44 E-value=14 Score=23.89 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=38.8
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee-CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA-DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~-~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+..||.++|-++|...+. .+|.-..+.+ +. +|.+ +.++ .-.+..+-.+|++..
T Consensus 34 V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV---~f~~~~~a~~A~~~l 90 (107)
T 3ulh_A 34 VSNLDFGVSDADIQELFA-EFGTLKKAAVHYDRSGRSLGTADV---HFERKADALKAMKQY 90 (107)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTSCEEEEEEE---EESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCcceEEEE---EECCHHHHHHHHHHh
Confidence 458999999999998887 7888767777 33 4554 3332 346889999998863
No 165
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.24 E-value=14 Score=23.63 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=39.1
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee-CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA-DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~-~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.. +.++ .-.+..+-.+|++..
T Consensus 21 ~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV---~f~~~~~a~~A~~~l 78 (100)
T 2do4_A 21 FISGLPFSCTKEELEEICK-AHGTVKDLRLVTNRAGKPKGLAYV---EYENESQASQAVMKM 78 (100)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTSCEEEEEEE---EESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECCCCCEEeEEEE---EECCHHHHHHHHHHh
Confidence 3558999999999998887 6888777777 43 3443 4432 346888988988763
No 166
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.66 E-value=15 Score=24.12 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=39.4
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-E-eCCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-Q-ADNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k-~~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.| + .+|.+ +.++ .-.+..+-.+|++..
T Consensus 19 ~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~g~~~g~afV---~f~~~~~a~~A~~~l 76 (114)
T 2do0_A 19 FVANLDYKVGWKKLKEVFS-MAGVVVRADILEDKDGKSRGIGTV---TFEQSIEAVQAISMF 76 (114)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTCSEEEEEEE---EESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCeeeEEEE---EECCHHHHHHHHHHh
Confidence 3568999999999998887 7888777777 4 23543 4443 246888999998863
No 167
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=66.14 E-value=8.8 Score=28.46 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=25.8
Q ss_pred cCCcEEEEEEeCCceEEEEecCCCCcHHHHHH
Q psy2972 44 HGQSIMCCIQADNKKFDIVISPKNTRVSDLKR 75 (143)
Q Consensus 44 ~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~ 75 (143)
.++.|.++++.+|+.+.+.+ ++..|+.+.=+
T Consensus 6 ~~~~m~i~~~ing~~~~~~v-~~~~tlL~~Lr 36 (168)
T 1t3q_A 6 ESQLMRISATINGKPRVFYV-EPRMHLADALR 36 (168)
T ss_dssp -CCCEEEEEEETTEEEEEEE-CTTSBHHHHHH
T ss_pred CCCcceEEEEECCEEEEEec-CCCCcHHHHHH
Confidence 35779999999999999999 88899988543
No 168
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=66.14 E-value=11 Score=25.68 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=30.7
Q ss_pred CcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHH
Q psy2972 46 QSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQI 81 (143)
Q Consensus 46 ~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~ 81 (143)
++|+|.+--.+.-|.+.| |++.+..+|+..|....
T Consensus 11 ~~~KVK~yy~DDIiAIrv-P~di~~~~L~dKi~~RL 45 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALML-KGDTTYKELRSKIAPRI 45 (85)
T ss_dssp CCEEEEECBTTCCEEEEE-CSCCCHHHHHHHHHHHH
T ss_pred CceEEEEEecCcEEEEEC-CCCCCHHHHHHHHHHHh
Confidence 679999955567999999 99999999999999964
No 169
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=66.11 E-value=31 Score=24.28 Aligned_cols=74 Identities=12% Similarity=0.349 Sum_probs=50.6
Q ss_pred EEEEE-EeCC---ceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCc--ccccccchhhh
Q psy2972 48 IMCCI-QADN---KKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGI--KLTNEKSLLSE 121 (143)
Q Consensus 48 m~l~V-k~~g---~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gk--kL~~d~~tL~d 121 (143)
++|+| -.+. ....+.| ..+.-|.-+=-.+-++.. +++ -|..+-|-...+ -|..-..||..
T Consensus 20 L~V~V~d~~~~~~~~~~lrV-~GdlHIGGvmlklVEki~-------i~~------dWSDhaLWW~~k~~WLlkt~~tLDk 85 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRV-SGDLHIGGVMLKLVEQMN-------IAQ------DWSDYALWWEQKRCWLLKTHWTLDK 85 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEE-CSCCBHHHHHHHHHHHHC-------CSS------CCSSEEEEETTTTEEECCTTSBHHH
T ss_pred EEEEEecCCcccCccEEEEE-eeccccchhhhhhhhhcc-------ccc------chHHhhhhhhhhchhhhhhhhhhhh
Confidence 55555 3332 5588888 666788887777766531 222 366676666443 45567889999
Q ss_pred hCCCCCCEEEEEee
Q psy2972 122 LGIESQCEITFVKR 135 (143)
Q Consensus 122 yGI~~g~tl~fv~r 135 (143)
|||+..+.++|-..
T Consensus 86 ygiqADa~L~ftp~ 99 (102)
T 2kmc_A 86 CGVQADANLLFTPQ 99 (102)
T ss_dssp HTCCTTSCEEEEEC
T ss_pred hceeeeeeeeccCC
Confidence 99999999999764
No 170
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=64.86 E-value=13 Score=27.56 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=48.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhHhHhhcccc----ccccc-----ccccceEEEeeCCcccccccchhhhhCCCCCCE
Q psy2972 59 FDIVISPKNTRVSDLKRTIERQITMQMKRKGLS----KQISW-----RHVWKSYWLSFDGIKLTNEKSLLSELGIESQCE 129 (143)
Q Consensus 59 ~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~----~~IsW-----~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~t 129 (143)
+.|=. =.+||+.||=.-|.+..... |..+. +.|.+ +|+-+..--.+.|.+-.+|++||.+.+..-||=
T Consensus 56 lQIYT-W~daTLrEL~~Lvk~~~p~a--r~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDy 132 (143)
T 4a6q_A 56 LQIYT-WMDATLKELTSLVKEVYPEA--RKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDY 132 (143)
T ss_dssp EEEEE-CTTCBHHHHHHHHHHHCGGG--GSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCE
T ss_pred eEEee-CCCCCHHHHHHHHHHhCccc--cCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCE
Confidence 44444 46799999999999876321 22221 11111 244455666667777778899999999999998
Q ss_pred EEEEe
Q psy2972 130 ITFVK 134 (143)
Q Consensus 130 l~fv~ 134 (143)
|-...
T Consensus 133 idvaI 137 (143)
T 4a6q_A 133 LDIAI 137 (143)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87765
No 171
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=64.45 E-value=19 Score=23.24 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=39.1
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee-CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA-DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~-~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.-..+.| +. +|.+ +.++ .-.+..+-.+|++.
T Consensus 19 ~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV---~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 19 FVGMLNKQQSEEDVLRLFQ-PFGVIDECTVLRGPDGSSKGCAFV---KFSSHTEAQAAIHA 75 (105)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECSSSCEEEEEEE---EESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCcCcEEEE---EeCCHHHHHHHHHH
Confidence 3568999999999998887 7888777777 43 3433 4443 34688898898876
No 172
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.29 E-value=18 Score=23.30 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=39.0
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.. +.++ .-.+..+-.+|++.
T Consensus 19 ~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV---~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 19 RVTNLSEDTRETDLQELFR-PFGSISRIYLAKDKTTGQSKGFAFI---SFHRREDAARAIAG 76 (103)
T ss_dssp EEESCCTTCCHHHHHTTST-TTCCEEEEEEEECSSSCSEEEEEEE---EESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeecCCCCceeeEEEE---EECCHHHHHHHHHH
Confidence 4568999999999998776 6888777777 43 4544 4432 34688899999886
No 173
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=62.59 E-value=15 Score=32.89 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=42.6
Q ss_pred CCCHHHHHhHHhhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhH
Q psy2972 30 DVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITM 83 (143)
Q Consensus 30 ~~t~~ev~~~ial~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~ 83 (143)
-+|..|+.+.. .++.|.+.| -.||....+.| ...+|+.||=..|..+..+
T Consensus 249 ~Ps~~Ei~Ai~---~~~~i~~~V~llDgt~~~~~v-ds~Tt~~ell~~V~~~LgL 299 (655)
T 3pvl_A 249 PPSWLELQATK---SKKPIMLPVTFMDGTTKTLLT-DSATTARELCNALADKISL 299 (655)
T ss_dssp CCCHHHHHHHH---HTCCEEEEEEETTSCEEEEEE-CTTCBHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHH---cCCceEEEEEecCCceEEEEE-ccCCcHHHHHHHHHHHcCC
Confidence 46788887654 577899999 89999999999 9999999999999998654
No 174
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.64 E-value=22 Score=22.52 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=37.9
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIE 78 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~ 78 (143)
+...||.++|-++|...++ .+|.-..|.. +.+|. +.++- -.+..+..+|++
T Consensus 12 ~V~nl~~~~t~~~l~~~F~-~~G~v~~v~~~~~~g~-~afV~---f~~~~~a~~ai~ 63 (94)
T 2e5g_A 12 FVSGFPRGVDSAQLSEYFL-AFGPVASVVMDKDKGV-FAIVE---MGDVGAREAVLS 63 (94)
T ss_dssp EEECCCTTCCHHHHHHHGG-GTSCEEEEEECSSSCC-EEEEE---ESSHHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCeEEEEEcCCCCc-EEEEE---ECCHHHHHHHHh
Confidence 4568999999999998887 7888777744 55666 55533 356788888877
No 175
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.23 E-value=29 Score=22.14 Aligned_cols=53 Identities=11% Similarity=0.203 Sum_probs=39.2
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.+ +.++ .-.+..+-.+|++.
T Consensus 12 ~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV---~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 12 FVGNIPYEATEEQLKDIFS-EVGPVVSFRLVYDRETGKPKGYGFC---EYQDQETALSAMRN 69 (104)
T ss_dssp EEESCCTTSCHHHHHHHHH-TTSCCSEEEEEEETTTTEEEEEEEE---ECSCHHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHH-hcCCeeEEEEEeCCCCCccceEEEE---EECCHHHHHHHHHH
Confidence 4568999999999998887 6887767777 43 4544 4443 34688888888876
No 176
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=61.19 E-value=61 Score=25.80 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhhcc-CCcccCCCCCCCHHHHHhHHhhccCCcE-EEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHh
Q psy2972 5 DQLLTETKEAIKNIRT-QNTLSHLPQDVTVEEIKSEMELLHGQSI-MCCIQADNKKFDIVISPKNTRVSDLKRTIERQIT 82 (143)
Q Consensus 5 ~~~~~~~~~~l~~il~-d~~L~dlp~~~t~~ev~~~ial~~g~am-~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~ 82 (143)
+.+-..+.+.|+.+|. ||- ..+|.+|+...+.--..+.+ .++.........+.+ .+..|+.++++.+++...
T Consensus 273 ~~~~~~l~~ll~~~L~~dP~-----~R~s~~e~l~~l~~il~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~t~ 346 (396)
T 4eut_A 273 RGLQVLLTPVLANILEADQE-----KCWGFDQFFAETSDILHRMVIHVFSLQQMTAHKIYI-HSYNTATIFHELVYKQTK 346 (396)
T ss_dssp HHHHHHHHHHHHHHSCCCTT-----TSCCHHHHHHHHHHHHTCEEEEEEETTTTEEEEEEE-CTTCBHHHHHHHHHHHHC
T ss_pred hHHHhhchHHHHHhhccChh-----hhccHHHHHHHHHHHhhceEEEEEEeccceEEEEEc-CchhHHHHHHHHHHHhcC
Confidence 4455677788888888 774 45788997766644444433 233233456677888 788899999999999752
Q ss_pred HhHhhcccccccccccccceEEEeeCCccc
Q psy2972 83 MQMKRKGLSKQISWRHVWKSYWLSFDGIKL 112 (143)
Q Consensus 83 ~~~~reg~~~~IsW~~vw~~~~Lif~gkkL 112 (143)
++ ..++-|.|.+..+
T Consensus 347 -------i~--------~~~q~~l~~~~~~ 361 (396)
T 4eut_A 347 -------II--------SSNQELIYEGRRL 361 (396)
T ss_dssp -------CC--------STTEEEESSSSEE
T ss_pred -------CC--------hhhhHHHhcCCCC
Confidence 21 2466788887444
No 177
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.69 E-value=21 Score=22.85 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=35.4
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .++ .+.+.. +.++.. +.++ .-.+..+-.+|++.-
T Consensus 19 ~V~nLp~~~t~~~l~~~F~-~~~-~~~~~~~~~~~~~~g~afV---~f~~~~~A~~A~~~l 74 (102)
T 2fc8_A 19 FVKGLSEDTTEETLKESFD-GSV-RARIVTDRETGSSKGFGFV---DFNSEEDAKAAKEAM 74 (102)
T ss_dssp EEECCCTTCCHHHHHHTST-TCS-EEEEEECSSSCSEEEEEEE---ECSSHHHHHHHHHHH
T ss_pred EEeCCCCccCHHHHHHHhc-CCe-EEEEEecCCCCCcCcEEEE---EECCHHHHHHHHHHh
Confidence 4568999999999998887 332 233333 344544 4443 346889999998863
No 178
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=58.37 E-value=21 Score=24.04 Aligned_cols=36 Identities=3% Similarity=0.104 Sum_probs=30.1
Q ss_pred cEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHHHhHh
Q psy2972 47 SIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQ 84 (143)
Q Consensus 47 am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~ 84 (143)
.|+|+|... -.+.+.| +..++..+|...|.+++.+.
T Consensus 5 ~~~VKV~~~-~tvairv-p~~~~y~~L~~~l~~kL~l~ 40 (83)
T 1oey_A 5 AYTLKVHYK-YTVVMKT-QPGLPYSQVRDMVSKKLELR 40 (83)
T ss_dssp CEEEEEESS-SEEEEEE-CTTCCHHHHHHHHHHHTTCC
T ss_pred cEEEEEEEE-EEEEEEC-CCCCCHHHHHHHHHHHhCCC
Confidence 488888443 6899999 99999999999999997544
No 179
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=57.68 E-value=30 Score=22.97 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=38.6
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-++|...++ .+|.-..+.+ +..| +.++. -.+..+-++||+.-
T Consensus 14 ~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~g--~afV~---f~~~~~A~~Ai~~l 66 (111)
T 1whx_A 14 LAKNLPAGTLAAEIQETFS-RFGSLGRVLLPEGGI--TAIVE---FLEPLEARKAFRHL 66 (111)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEECCSSSS--CEEEE---ESCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeCCCC--EEEEE---eCCHHHHHHHHHHh
Confidence 3558999999999999887 6898777777 5323 34332 36788888898874
No 180
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=56.11 E-value=31 Score=24.86 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=56.4
Q ss_pred ccCCcEEEEEEeCC-----ceEEEEecCCCCcHHHHHHHHHH-HHhHhHhhcccccccccccccceEEEeeCCcccccc-
Q psy2972 43 LHGQSIMCCIQADN-----KKFDIVISPKNTRVSDLKRTIER-QITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNE- 115 (143)
Q Consensus 43 ~~g~am~l~Vk~~g-----~~~~V~V~~~~aTV~dLK~aI~~-~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d- 115 (143)
.++.++-|+|-=++ +.+.+-| ++..|..+|=+.+-. .|...|+= .+|.|.- -+|+. +|+....|
T Consensus 19 nF~g~qLlYigWd~HllFcap~~~p~-pP~mpFg~lv~~vl~~~~~~hPDf----a~idws~---v~W~l-~g~pftPD~ 89 (119)
T 3u52_E 19 NFHGMQLLYVYWPDHLLFCAPFALLV-QPGMTFSALVDEILKPATAAHPDS----AKADFLN---AEWLL-NDEPFTPKA 89 (119)
T ss_dssp GGTTCEEEEEECTTCTTSCSCEEEEE-CTTSBHHHHHHHTHHHHTTTSTTG----GGCCTTS---SEEEE-TTEEECCCT
T ss_pred hCCCCEEEEEEecCCeeecCceeecC-CCCCCHHHHHHHhcchhhhcCCcc----ccCCcch---heEEE-CCccCCCCh
Confidence 35666778883332 4588999 888999998775544 33333332 3456533 23554 68888666
Q ss_pred cchhhhhCCCCCCEEEEE
Q psy2972 116 KSLLSELGIESQCEITFV 133 (143)
Q Consensus 116 ~~tL~dyGI~~g~tl~fv 133 (143)
+++|.+.||.-.|.|+|.
T Consensus 90 ~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 90 DASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp TSBTTTTTCCTTEEEEEE
T ss_pred hhhHHHcCCCchheEEEe
Confidence 899999999999999986
No 181
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=55.69 E-value=35 Score=21.39 Aligned_cols=56 Identities=11% Similarity=0.095 Sum_probs=38.3
Q ss_pred cccCCCCCCCHHHHHhHHhhccC--CcEEEEE-E--eCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHG--QSIMCCI-Q--ADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g--~am~l~V-k--~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-+++...++ .+| .-..+.+ + .+|++--+-. -.-.+..+..+|++..
T Consensus 5 ~V~nL~~~~t~~~l~~~F~-~~G~~~v~~v~i~~~~~~g~~kG~af-V~f~~~~~a~~Ai~~l 65 (90)
T 3p5t_L 5 YIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFAL-VGVGSEASSKKLMDLL 65 (90)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTTCCCCCCEEEEECTTTCCEEEEEE-ECC-CHHHHHHHHHHG
T ss_pred EEeCCCCCCCHHHHHHHHH-HhCCCceEEEEEEecCCCCccCcEEE-EEECCHHHHHHHHHHc
Confidence 4568999999999998875 677 6556666 3 3566533322 2456889999999873
No 182
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.95 E-value=21 Score=22.98 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=38.5
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCC--ceEEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADN--KKFDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g--~~~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+...||.++|-++|...++ .+|.-..+.+ +..+ +.+.++- -.+..+-.+|++.
T Consensus 19 ~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~g~afV~---f~~~~~a~~A~~~ 74 (103)
T 2cq3_A 19 HVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNERGSKGFGFVT---FENSADADRAREK 74 (103)
T ss_dssp EEESCCTTCCHHHHHHHGG-GTSCEEEEEEECCTTTTCCEEEEE---ESCHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCcEEEEEE---ECCHHHHHHHHHH
Confidence 3568999999999998876 6888778888 4433 2244433 3678888888876
No 183
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=54.60 E-value=33 Score=20.78 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=38.8
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-+++...++ .+|.-..+.+ +. +|.+ +.++ .-.+..+-.+|++.-
T Consensus 5 ~V~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV---~f~~~~~a~~a~~~l 63 (83)
T 3md1_A 5 FVGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFV---SFTSQDDAQNAMDSM 63 (83)
T ss_dssp EEECCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEE---EESCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCccceEEE---EECCHHHHHHHHHHh
Confidence 3568999999999998875 6788777777 44 3444 4432 336888888888763
No 184
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.34 E-value=14 Score=22.87 Aligned_cols=53 Identities=13% Similarity=0.106 Sum_probs=38.2
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...+. .+|.-..+.+ +. +|.+ +.++- -.+..+-.+|++.
T Consensus 9 ~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~---f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 9 YIRGLQPGTTDQDLVKLCQ-PYGKIVSTKAILDKTTNKCKGYGFVD---FDSPSAAQKAVTA 66 (85)
T ss_dssp EEESCCTTCCHHHHHTTST-TTSCEEEEEEECCSSSCSCCSEEEEE---ESCHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCcEEEEE---ECCHHHHHHHHHH
Confidence 3568999999999998877 7888777777 33 2433 44432 3678888888875
No 185
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=53.87 E-value=16 Score=31.37 Aligned_cols=73 Identities=7% Similarity=0.217 Sum_probs=46.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH--HhHhHhhc--ccc--ccc--ccccccceEEEeeCC--cccccccchhhhhCCC
Q psy2972 56 NKKFDIVISPKNTRVSDLKRTIERQ--ITMQMKRK--GLS--KQI--SWRHVWKSYWLSFDG--IKLTNEKSLLSELGIE 125 (143)
Q Consensus 56 g~~~~V~V~~~~aTV~dLK~aI~~~--~~~~~~re--g~~--~~I--sW~~vw~~~~Lif~g--kkL~~d~~tL~dyGI~ 125 (143)
...++|.| +.++|+.+.=++.++. |+|..+ + .|+ ..| -+.. =++||..+.+ +.+ ..=..+|.++
T Consensus 329 ~~~~~Vtv-~~gssll~vLk~A~e~~~F~F~~~-es~~G~fItSInG~~~~-~~~YW~l~~~p~~pl---~~Gv~~y~~~ 402 (414)
T 2bb6_A 329 SYRHSVSV-PAGSSLEDILKNAQEHGRFRFRTQ-ASLSGPFLTSVLGRKAG-EREFWQVLRDPDTPL---QQGIADYRPK 402 (414)
T ss_dssp CEEEEEEE-ETTCCHHHHHHHHHHSSSCCEEEE-CCTTSCEEEEETTEECC-TTEEEEEEETTTEEC---SSCTTTCCCC
T ss_pred ccceEEEe-cCCCCHHHHHHHHHhccCCceEee-ecCCCceEEEECCCccC-CCceEEEEECCCCcc---cccccceecC
Confidence 34489999 8889999988877775 222211 1 010 000 0001 2588888866 554 3567899999
Q ss_pred CCCEEEEEe
Q psy2972 126 SQCEITFVK 134 (143)
Q Consensus 126 ~g~tl~fv~ 134 (143)
||+.|.|..
T Consensus 403 ~ge~I~f~~ 411 (414)
T 2bb6_A 403 DGETIELRL 411 (414)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEe
Confidence 999999864
No 186
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=53.35 E-value=42 Score=23.28 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=38.4
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+..||.++|-++|...++ .+|.-..|.| +. ++.+ +.++. -.+..+..+|++.
T Consensus 44 V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~---f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 44 VGNLSFYTTEEQIYELFS-KSGDIKKIIMGLDKMKKTACGFCFVE---YYSRADAENAMRY 100 (156)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEE---ESSHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEE---ECCHHHHHHHHHH
Confidence 457999999999998885 6788777777 44 2443 44433 4688899999886
No 187
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=53.06 E-value=41 Score=21.35 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=38.0
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEE--------EEE-E--eCCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIM--------CCI-Q--ADNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~--------l~V-k--~~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
...||.++|-++|...++ .+|.... +.+ + .+|.+ +.++. -.+..+..+|++..
T Consensus 18 V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~---f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 18 VQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVS---FDDPPSAKAAIDWF 83 (99)
T ss_dssp EECCCSSCCHHHHHHHHT-TTSCBCEETTTTEESEEEEECTTTCSEEEEEEEE---BSSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-HhCCEeeccccccccEEEEecCCCCCeeeEEEEE---ECCHHHHHHHHHHh
Confidence 458999999999999887 6787655 666 3 33544 54433 46888888888763
No 188
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=52.66 E-value=23 Score=21.88 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=36.2
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTI 77 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI 77 (143)
+...||.++|-+++...++ .+|.-..+.+ +. +|.+ +.++- -.+..+..+|+
T Consensus 10 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~---f~~~~~a~~a~ 65 (89)
T 3ucg_A 10 YVGNVDYGATAEELEAHFH-GCGSVNRVTILCDKFSGHPKGFAYIE---FSDKESVRTSL 65 (89)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGCCEEEEEEEESCSSSSCCEEEEEE---ESSTHHHHHHG
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCcceEEEEE---ECCHHHHHHHH
Confidence 4568999999999999887 6888777777 43 3433 44433 24667777777
No 189
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.25 E-value=42 Score=21.19 Aligned_cols=55 Identities=7% Similarity=0.108 Sum_probs=38.0
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcE-EEEE-Ee--CCceEEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSI-MCCI-QA--DNKKFDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am-~l~V-k~--~g~~~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+...||.++|-+++...++ .+|.-. .+.+ +. +|..--+-. -.-.+..+-.+|++.
T Consensus 13 ~V~nLp~~~t~~~l~~~F~-~~G~i~~~v~i~~~~~~g~~~g~af-V~f~~~~~a~~A~~~ 71 (99)
T 2div_A 13 WMGDLEPYMDENFISRAFA-TMGETVMSVKIIRNRLTGIPAGYCF-VEFADLATAEKCLHK 71 (99)
T ss_dssp EECSCCTTCCHHHHHHHHH-HTTCCCCEEEEEECSSSCCEEEEEE-EECSCHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-HhCCcceEEEEeecCCCCCcCCEEE-EEeCCHHHHHHHHHH
Confidence 4568999999999998775 578755 6666 33 455432222 234688888888875
No 190
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.20 E-value=16 Score=24.12 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=38.6
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.-..+.| +. ++.+ +.++- -.+..+-.+|++.
T Consensus 21 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~---f~~~~~a~~Ai~~ 78 (116)
T 2cqd_A 21 FVGGLPYHTTDASLRKYFE-GFGDIEEAVVITDRQTGKSRGYGFVT---MADRAAAERACKD 78 (116)
T ss_dssp EEECCCSSCCHHHHHHHHH-TTSCEEEEEESCCSSSCCCCSEEEEE---ESSHHHHHHHHTC
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCeeEEEEEEcCCCCccceEEEEE---ECCHHHHHHHHHh
Confidence 3568999999999999887 7898778888 43 2333 44433 3578888888765
No 191
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.12 E-value=25 Score=22.11 Aligned_cols=54 Identities=11% Similarity=0.220 Sum_probs=39.0
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.+ +.++- -.+..+-.+|++..
T Consensus 9 ~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~---f~~~~~a~~A~~~l 67 (95)
T 2dnz_A 9 YVGSLHFNITEDMLRGIFE-PFGKIDNIVLMKDSDTGRSKGYGFIT---FSDSECARRALEQL 67 (95)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEEECCSSSCCCCSEEEEE---ESCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEeEEEEeecCCCCceeeEEEEE---ECCHHHHHHHHHHh
Confidence 3568999999999998886 6888778888 43 2333 44432 36788888888863
No 192
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=49.96 E-value=62 Score=23.26 Aligned_cols=76 Identities=20% Similarity=0.386 Sum_probs=49.8
Q ss_pred CCHHHHHhH---HhhccCCcEEEEE-EeCCce-------EEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccc
Q psy2972 31 VTVEEIKSE---MELLHGQSIMCCI-QADNKK-------FDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHV 99 (143)
Q Consensus 31 ~t~~ev~~~---ial~~g~am~l~V-k~~g~~-------~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~v 99 (143)
-|+|+...+ |.-.++..+-|.| +..++. -.+-| +.+.||.++-..|.+...+.++
T Consensus 16 ~~~e~R~~e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflV-p~~~tv~qf~~~iRkrL~l~~~------------- 81 (130)
T 2zjd_A 16 RTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLV-PDHVNMSELIKIIRRRLQLNAN------------- 81 (130)
T ss_dssp SCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEE-ETTCBHHHHHHHHHHHHTCCTT-------------
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEc-CCCCcHHHHHHHHHHHhCCCCC-------------
Confidence 355654433 4456778889999 887655 34567 8889999999999998755443
Q ss_pred cceEEEeeCCcccccccchhhh
Q psy2972 100 WKSYWLSFDGIKLTNEKSLLSE 121 (143)
Q Consensus 100 w~~~~Lif~gkkL~~d~~tL~d 121 (143)
+.+.|.|.++.+-.-+.++.+
T Consensus 82 -~alFl~~vn~~~p~~~~~m~~ 102 (130)
T 2zjd_A 82 -QAFFLLVNGHSMVSVSTPISE 102 (130)
T ss_dssp -CCEEEEETTTEECCTTSBHHH
T ss_pred -ceEEEEEECCccCCccchHHH
Confidence 234554655555444555544
No 193
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=49.70 E-value=53 Score=22.05 Aligned_cols=54 Identities=22% Similarity=0.374 Sum_probs=38.9
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-+++...++ .+|.-..+.+ +. +|.+ +.++ .-.+..+-.+|++..
T Consensus 6 ~v~nlp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV---~f~~~~~A~~a~~~l 64 (167)
T 1fxl_A 6 IVNYLPQNMTQEEFRSLFG-SIGEIESCKLVRDKITGQSLGYGFV---NYIDPKDAEKAINTL 64 (167)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCCEEEEEEE---EESSHHHHHHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCcceeEEEE---EECCHHHHHHHHHHc
Confidence 3568999999999998887 6888777777 43 4443 3332 336888888888763
No 194
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=49.43 E-value=36 Score=21.41 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=26.9
Q ss_pred CHHHHHhHHhhccCCcEEEEEEeCCceEEEEe
Q psy2972 32 TVEEIKSEMELLHGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 32 t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V 63 (143)
+.+++...++-..|+.+.++|.++|+.+.+.+
T Consensus 38 ~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v 69 (91)
T 2zpm_A 38 QWVTFVMLVRDNPGXSLALEIERQGSPLSLTL 69 (91)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEEETTEEEEEEE
T ss_pred CHHHHHHHHhcCCCCeEEEEEEECCeEEEEEE
Confidence 67888888877678899999966888888888
No 195
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=48.85 E-value=24 Score=22.39 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=38.2
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.. +.++- -.+..+-.+|++.
T Consensus 12 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~---f~~~~~a~~A~~~ 69 (99)
T 1whw_A 12 FVRNLSYTSSEEDLEKLFS-AYGPLSELHYPIDSLTKKPKGFAFVT---FMFPEHAVKAYAE 69 (99)
T ss_dssp EEECCCTTCCHHHHHHHHH-TTSCEEEEECCCCTTTCCCCSEEEEE---ESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCCcCeEEEEE---ECCHHHHHHHHHH
Confidence 3568999999999998887 6788777777 43 3332 44432 3678888888876
No 196
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=48.26 E-value=28 Score=23.30 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=38.8
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee-CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA-DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~-~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+...||.++|-++|...++ .+|.-..+.+ +. +|.. +.++- -.+..+..+|++.
T Consensus 11 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~---F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 11 FIGGLNRETNEKMLKAVFG-KHGPISEVLLIKDRTSKSRGFAFIT---FENPADAKNAAKD 67 (116)
T ss_dssp EEECCTTTCCHHHHHHHHH-TSSCCSEEEEECSTTTTCCCEEEEE---CSSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCcccEEEEE---ECCHHHHHHHHHH
Confidence 4568999999999998886 6788777777 32 3433 55433 4688899998876
No 197
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=48.16 E-value=38 Score=21.12 Aligned_cols=57 Identities=9% Similarity=0.071 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEEeeecc
Q psy2972 66 KNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVKRLKD 138 (143)
Q Consensus 66 ~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~rlr~ 138 (143)
+.+||.+|.+++...+.-.... +. -.......+|+... .+.-+++||+|.|..-.-|
T Consensus 24 ~~~tv~~ll~~L~~~~p~~~~~------l~----~~~~~v~vN~~~v~------~~~~l~~gD~V~i~Ppv~G 80 (81)
T 1fm0_D 24 DFPTVEALRQHMAAQSDRWALA------LE----DGKLLAAVNQTLVS------FDHPLTDGDEVAFFPPVTG 80 (81)
T ss_dssp CCSBHHHHHHHHHTTCHHHHHH------HC----CTTCEEEETTEECC------TTCBCCTTCEEEEECCCCC
T ss_pred CCCCHHHHHHHHHHHChhHHHH------hc----CCCEEEEECCEECC------CCCCCCCCCEEEEeCCCCC
Confidence 5679999999988654210000 00 01123445665542 2557999999999876543
No 198
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=47.86 E-value=9.7 Score=28.26 Aligned_cols=33 Identities=9% Similarity=0.206 Sum_probs=28.0
Q ss_pred cCCcEEEEEEeCCceEEEEecCCCC---cHHHHHHHH
Q psy2972 44 HGQSIMCCIQADNKKFDIVISPKNT---RVSDLKRTI 77 (143)
Q Consensus 44 ~g~am~l~Vk~~g~~~~V~V~~~~a---TV~dLK~aI 77 (143)
.++.|+|.++.++..+.++. .+++ |..+|.+++
T Consensus 26 ~~~~~~I~i~~~~~~~~a~L-~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 26 RGVEMRLRIRFESAECEVEL-YEEWAPETVRAIADAL 61 (153)
T ss_dssp CSSCCCEEEEETTEEEEECC-CTTSCHHHHHHHHHTC
T ss_pred ccCCeEEEEEECCEEEEEEE-cCCCCHHHHHHHHHhC
Confidence 36789999988889999999 8888 999988764
No 199
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=47.67 E-value=28 Score=22.09 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=39.0
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.+ +.++ .-.+..+-.+|++..
T Consensus 6 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV---~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 6 YLGSIPYDQTEEQILDLCS-NVGPVINLKMMFDPQTGRSKGYAFI---EFRDLESSASAVRNL 64 (96)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTCCBCSEEEE---EESSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCccceEEEE---EECCHHHHHHHHHHh
Confidence 4568999999999998887 6888778887 43 2332 4442 236888888888763
No 200
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=47.37 E-value=22 Score=30.43 Aligned_cols=70 Identities=11% Similarity=0.194 Sum_probs=43.7
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH---HhHhHhh----------cccccccccccccceEEEeeCC-cccccccchhhhh
Q psy2972 57 KKFDIVISPKNTRVSDLKRTIERQ---ITMQMKR----------KGLSKQISWRHVWKSYWLSFDG-IKLTNEKSLLSEL 122 (143)
Q Consensus 57 ~~~~V~V~~~~aTV~dLK~aI~~~---~~~~~~r----------eg~~~~IsW~~vw~~~~Lif~g-kkL~~d~~tL~dy 122 (143)
..+.|.| +..+|+.+.=++.++. |+|..+. +|... ..==++||..+.+ +.+ ..=..+|
T Consensus 313 ~~~~Vtv-~~gssll~vLk~a~e~n~~F~F~~~e~~~G~fItSInG~~~----~~~~~~YW~l~~~g~~~---~~G~~~y 384 (399)
T 2pmv_A 313 ETINVSV-KSGSVLLVVLEEAQRKNPMFKFETTMTSWGLVVSSINNIAE----NVNHKTYWQFLSGVTPL---NEGVADY 384 (399)
T ss_dssp CCEEEES-SSCSCHHHHHHHHHHSCCSCCEEEEEETTEEEEEEESSCBC----CGGGTEEEEEEETTEEC---SSCTTTC
T ss_pred cceEEEe-cCCCCHHHHHHHHHHhCcCCceEEeecCCCceEEeECCCcc----CcCCCeeEEEEECCeec---ccchhhe
Confidence 3379999 8889999988888776 2211110 01000 0001367777755 554 3467899
Q ss_pred CCCCCCEEEEEe
Q psy2972 123 GIESQCEITFVK 134 (143)
Q Consensus 123 GI~~g~tl~fv~ 134 (143)
.++||+.|.|..
T Consensus 385 ~~~~gd~I~f~~ 396 (399)
T 2pmv_A 385 IPFNHEHITANF 396 (399)
T ss_dssp CCCTTCEEEEEE
T ss_pred ecCCCCEEEEEE
Confidence 999999999953
No 201
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.31 E-value=55 Score=21.12 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=38.3
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEEEeCCc--eEEEEecCCCCcHHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNK--KFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~Vk~~g~--~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+..||.++|-++|...++- +|.-..+.+..++. -+.++. -.+..+-.+|++..
T Consensus 27 V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~~~~~g~afV~---f~~~~~A~~A~~~l 81 (109)
T 1x4a_A 27 VGNLPPDIRTKDIEDVFYK-YGAIRDIDLKNRRGGPPFAFVE---FEDPRDAEDAVYGR 81 (109)
T ss_dssp EESCCTTCCHHHHHHHHGG-GSCEEEEEECCSSSSSCCEEEE---ESCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCcEEEEE---ECCHHHHHHHHHHc
Confidence 5589999999999988764 78877788833333 244433 36889999998763
No 202
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=47.15 E-value=47 Score=21.08 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=39.4
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-++|...++ .+|.-..+.+..+.+.+.++- -.+..+..+|++.-
T Consensus 4 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~afV~---f~~~~~a~~A~~~l 57 (101)
T 2hvz_A 4 YVGNLGTGAGKGELERAFS-YYGPLRTVWIARNPPGFAFVE---FEDPRDAEDAVRGL 57 (101)
T ss_dssp EEECCCSSCSHHHHHHHHH-HHCCCSEEEEESSSSSEEEEE---CSSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeCCCCEEEEE---ECCHHHHHHHHHHH
Confidence 3568999999999998886 678877788833344455543 36788888888863
No 203
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=46.95 E-value=44 Score=23.10 Aligned_cols=47 Identities=19% Similarity=0.407 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHH
Q psy2972 27 LPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 27 lp~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+|.-+..+||..-..-.+|+.|.+.-+ +..+.|.+ .|=.||-+||+-
T Consensus 20 f~RPvkf~dl~qkv~~afGq~ldl~y~--nnEL~iPL----~~Q~DLDkAvel 66 (94)
T 2jrh_A 20 FSRPVKYEDVEHKVTTVFGQPLDLHYM--NNELSILL----KNQDDLDKAIDI 66 (94)
T ss_dssp ECSSCCHHHHHHHHHHHHCSSEEEEEE--CSSCEEEC----CSHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEe--cceeEEec----cCHHHHHHHHHH
Confidence 578899999999999999999999885 33344433 688999999987
No 204
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=46.88 E-value=36 Score=20.74 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=38.4
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-+++...++ .+|.-..+.+ +. +|.. +.++ .-.+..+-.+|++.-
T Consensus 11 ~V~nl~~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV---~f~~~~~a~~A~~~l 69 (85)
T 3mdf_A 11 YVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFV---EFELAEDAAAAIDNM 69 (85)
T ss_dssp EEECCCTTCCHHHHHHHHG-GGSCEEEEECCEETTTTEECSEEEE---EESSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHh-ccCCEEEEEEEECCCCCccccEEEE---EECCHHHHHHHHHHh
Confidence 3568999999999998875 6888777777 43 3433 3332 236788888888763
No 205
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=46.85 E-value=20 Score=23.92 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=39.0
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.| +. +|.+ +.++. -.+..+-.+|++..
T Consensus 26 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~---f~~~~~a~~A~~~l 84 (126)
T 3ex7_B 26 FVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVE---YETYKEAQAAMEGL 84 (126)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTSSBCSCEEEE---ESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEE---ECCHHHHHHHHHHh
Confidence 3458999999999998886 7888777777 44 3433 44432 36888888888863
No 206
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=46.71 E-value=23 Score=23.26 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=39.3
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEEEeCCc--eEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNK--KFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~Vk~~g~--~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-++|...++ .+|.-..+.+..++. .+.++- -.+..+-.+|++..
T Consensus 12 ~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~g~afV~---f~~~~~A~~A~~~l 67 (115)
T 3lqv_A 12 YIRNLPYKITAEEMYDIFG-KYGPIRQIRVGNTPETRGTAYVV---YEDIFDAKNAVDHL 67 (115)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEEEECSTTTTTCEEEE---ESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeCCCCCcEEEEE---ECCHHHHHHHHHHc
Confidence 4568999999999998886 788888888833333 244432 36788888898864
No 207
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=46.27 E-value=49 Score=22.50 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=38.9
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee-CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA-DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~-~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+..||.++|-+++...++ .+|.-..+.+ +. +|.+ +.+ | .-.+..+-.+|++.-
T Consensus 100 v~nl~~~~t~~~l~~~F~-~~G~i~~v~~~~~~~g~~~g~af-V--~f~~~~~A~~A~~~l 156 (175)
T 3nmr_A 100 IGMISKKCTENDIRVMFS-SFGQIEECRILRGPDGLSRGCAF-V--TFTTRAMAQTAIKAM 156 (175)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTSCEEEEEE-E--EESSHHHHHHHHHHH
T ss_pred EcCCCCcCCHHHHHHHHH-hCCCEEEEEEEECCCCCEEEEEE-E--EECCHHHHHHHHHHh
Confidence 447999999999999886 7888777777 43 3543 333 2 347889999998874
No 208
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.13 E-value=26 Score=22.69 Aligned_cols=54 Identities=7% Similarity=0.075 Sum_probs=39.1
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.| +. +|.. +.++- -.+..+-.+|++..
T Consensus 19 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~---f~~~~~A~~A~~~~ 77 (111)
T 1x4h_A 19 FIRNLSFDSEEEALGEVLQ-QFGDLKYVRVVLHPDTEHSKGCAFAQ---FMTQEAAQKCLAAA 77 (111)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCCBCSEEEEE---ESSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCccEEEEE---ECCHHHHHHHHHHh
Confidence 3568999999999999886 6888777777 33 2333 55433 36888988988873
No 209
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=45.90 E-value=56 Score=22.79 Aligned_cols=55 Identities=11% Similarity=0.135 Sum_probs=38.6
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCceEEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKKFDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...+. .+|.-..+.+ +. +|.+--+-. -.-.+..+-.+|++.
T Consensus 108 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~af-V~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 108 FVGGIKEDTEEHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAF-VTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEECCTTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEE-EEESSHHHHHHHHHC
T ss_pred EEeCCCCCCCHHHHHHHHh-cCCCeEEEEEeecCCCCCccceEE-EEECCHHHHHHHHHh
Confidence 3558999999999999887 7898777777 54 354422222 134678888888864
No 210
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.56 E-value=33 Score=21.86 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=39.2
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.+ +. ++.. +.++- -.+..+-.+|++..
T Consensus 16 ~v~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~---f~~~~~A~~A~~~l 74 (102)
T 1x5s_A 16 FVGGLSFDTNEQSLEQVFS-KYGQISEVVVVKDRETQRSRGFGFVT---FENIDDAKDAMMAM 74 (102)
T ss_dssp EEESCCTTCCHHHHHHHHH-HHSCCCEEEECCCSSSCSCCSEEEEE---CSSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEE---ECCHHHHHHHHHHh
Confidence 3568999999999998886 6788777777 43 3332 55533 46888988888763
No 211
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=45.35 E-value=61 Score=22.60 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=39.3
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.+ +.++. -++..+-.+|++.
T Consensus 17 ~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~---f~~~~~A~~A~~~ 74 (196)
T 1l3k_A 17 FIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVT---YATVEEVDAAMNA 74 (196)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEE---ESSHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEEcCCCCCccceEEEE---eCCHHHHHHHHhc
Confidence 4568999999999998887 6888777777 43 3433 55443 3678888888865
No 212
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=44.97 E-value=33 Score=23.53 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=38.7
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.. +.++- -.+..+-.+|++.-
T Consensus 50 ~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~---F~~~~~A~~Ai~~l 108 (129)
T 2kxn_B 50 GVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVY---FENVDDAKEAKERA 108 (129)
T ss_dssp CEETCTTSCCHHHHHHHHT-TTSCEEEEEEECCSSSSCCCCEEEEE---ESCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEE---ECCHHHHHHHHHHh
Confidence 3558999999999998886 6888777777 32 2332 44432 36888999998863
No 213
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=44.96 E-value=18 Score=23.23 Aligned_cols=60 Identities=8% Similarity=0.161 Sum_probs=40.4
Q ss_pred EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEE
Q psy2972 53 QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITF 132 (143)
Q Consensus 53 k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~f 132 (143)
+.+|+.+++ +..||.+|-+.+.- .. +......+|..+. .....++-+++||.|-+
T Consensus 4 ~vNG~~~e~----~~~Tl~~LL~~l~~------~~-------------~~vAV~vNg~iVp--r~~~~~~~L~dGD~veI 58 (73)
T 2kl0_A 4 TINGEQREV----QSASVAALMTELDC------TG-------------GHFAVALNYDVVP--RGKWDETPVTAGDEIEI 58 (73)
T ss_dssp EETTEEECC----CCSBHHHHHHHTTC------CS-------------SSCEEEESSSEEC--HHHHTTCBCCTTCEEEE
T ss_pred EECCEEEEc----CCCcHHHHHHHcCC------CC-------------CcEEEEECCEECC--hHHcCcccCCCCCEEEE
Confidence 446775554 23799999775432 11 2336777888873 56677788999999998
Q ss_pred Eeeec
Q psy2972 133 VKRLK 137 (143)
Q Consensus 133 v~rlr 137 (143)
+.-.-
T Consensus 59 v~~Vg 63 (73)
T 2kl0_A 59 LTPRQ 63 (73)
T ss_dssp ECCCC
T ss_pred Ecccc
Confidence 86554
No 214
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=44.93 E-value=56 Score=22.05 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=38.5
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
...||.++|-+|+..+.+ .+|+-..+.+ + ++-+.++- -.+..+-++||+.-
T Consensus 26 V~NLp~~~te~~L~~lF~-~fG~V~~v~i~~--~kg~AFVe---f~~~~~A~~Av~~l 77 (100)
T 3r27_A 26 IRGLIDGVVEADLVEALQ-EFGPISYVVVMP--KKRQALVE---FEDVLGACNAVNYA 77 (100)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEET--TTTEEEEE---ESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHh-ccCCEEEEEEEc--CCCEEEEE---ECCHHHHHHHHHHh
Confidence 458999999999987765 7899777777 4 33455544 36889999999874
No 215
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=44.70 E-value=62 Score=21.71 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=38.8
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||..+|-+++..... .+|.-..+.+ +. +|.+--+.. -.-.+..+-.+|++.-
T Consensus 92 ~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~af-V~f~~~~~A~~A~~~l 150 (167)
T 1fxl_A 92 YVSGLPKTMTQKELEQLFS-QYGRIITSRILVDQVTGVSRGVGF-IRFDKRIEAEEAIKGL 150 (167)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEE-EEESSHHHHHHHHHHH
T ss_pred EECCCCCcCCHHHHHHHHH-hcCCEeEEEEEecCCCCCccceEE-EEeCCHHHHHHHHHHh
Confidence 3557999999999998887 6888777777 43 344322211 1346888888888874
No 216
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.33 E-value=29 Score=22.28 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=38.8
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee---CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA---DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~---~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.. +.++ .-.+..+-.+|++.
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~g~afV---~f~~~~~a~~A~~~ 77 (107)
T 2cph_A 19 LVRNIPFQANQREIRELFS-TFGELKTVRLPKKMTGTGAHRGFGFV---DFITKQDAKKAFNA 77 (107)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEECCCCCSSSCSSCSEEEE---EESSHHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHH-ccCCeEEEEEecCCCCCCCcCceEEE---EECCHHHHHHHHHH
Confidence 3558999999999998876 5888778888 54 3433 4443 23688888888886
No 217
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=44.18 E-value=28 Score=24.09 Aligned_cols=81 Identities=5% Similarity=0.085 Sum_probs=51.2
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccc---cccc-eEEEeeCCcccccccchhh
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWR---HVWK-SYWLSFDGIKLTNEKSLLS 120 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~---~vw~-~~~Lif~gkkL~~d~~tL~ 120 (143)
+..-|+| ..||++-.|.| ++.+|+.|+=+.+.++... ..-.+|. +.+. +..=+|.+..+. -..+.
T Consensus 8 ~k~vvkvf~~Dgssksi~V-~~~~Ta~dv~~~L~~K~~~-------~~~~~WaLvE~~P~L~~ER~~EDHE~v--vevl~ 77 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEV-AAGATARHVCEMLVQRAHA-------LSDETWGLVECHPHLALERGLEDHESV--VEVQA 77 (100)
T ss_dssp SCEEEEEEETTSCEEEEEE-CTTCCHHHHHHHHHCSSSC-------CCCCCCCEEEEETTTTEEEEECSSSCH--HHHHT
T ss_pred CCEEEEEEecCCCEEEEEE-CCCCcHHHHHHHHHHHcCC-------CCCCCeEEEEecCCCCcEEeccCchhH--HHHHh
Confidence 4578889 99999999999 9999999999988887532 2223453 2221 111122222211 12355
Q ss_pred hhCCCCCCEEEEEeee
Q psy2972 121 ELGIESQCEITFVKRL 136 (143)
Q Consensus 121 dyGI~~g~tl~fv~rl 136 (143)
..++.....+.|.+|.
T Consensus 78 ~W~~~s~nr~~F~kr~ 93 (100)
T 1wgr_A 78 AWPVGGDSRFVFRKNF 93 (100)
T ss_dssp TSCSSSCCEEEECSCC
T ss_pred hCccCCCcEEEEecch
Confidence 6677778888887664
No 218
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=44.10 E-value=19 Score=21.63 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=35.7
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIE 78 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~ 78 (143)
++..||.++|-+++...++ .+|.-..+.+ +. +|.+ +.++- -.+..+.++|++
T Consensus 3 ~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~---f~~~~~a~~a~~ 59 (75)
T 2mss_A 3 FVGGLSVNTTVEDVKHYFE-QFGKVDDAMLMFDKTTNRHRGFGFVT---FESEDIVEKVCE 59 (75)
T ss_dssp EEECCCSSCCHHHHHHHHH-TTSCCSEECCCBCSSSTTSCBEEEEE---CSCHHHHHHHHS
T ss_pred EEecCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcCcEEEEE---ECCHHHHHHHHH
Confidence 3568999999999998886 5788777777 43 3433 55443 346677666654
No 219
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=44.07 E-value=54 Score=20.39 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=38.3
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee-CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA-DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~-~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.+ +.++ .-.+..+-.+|++..
T Consensus 20 ~v~nlp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV---~f~~~~~a~~A~~~l 77 (95)
T 2ywk_A 20 FVGNLEARVREEILYELFL-QAGPLTKVTICKDREGKPKSFGFV---CFKHPESVSYAIALL 77 (95)
T ss_dssp EEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTSCEEEEEEE---EESSTHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCCceEEEE---EECCHHHHHHHHHHh
Confidence 3568999999999998875 4788777777 43 2443 4432 236788888888863
No 220
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=43.83 E-value=30 Score=23.94 Aligned_cols=36 Identities=28% Similarity=0.870 Sum_probs=21.5
Q ss_pred EEEEecCCCCcH---HHHHHHHHHHHhHhHhhcccccccccccccc
Q psy2972 59 FDIVISPKNTRV---SDLKRTIERQITMQMKRKGLSKQISWRHVWK 101 (143)
Q Consensus 59 ~~V~V~~~~aTV---~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~ 101 (143)
++|.+ |.+.+- .++|.. ++.+....+++| -|+|+|+
T Consensus 7 m~V~~-P~~~~~~~~~~~~a~-Eka~a~eLq~~G-----~~~~lWR 45 (96)
T 1mli_A 7 MTVKL-PVDMDPAKATQLKAD-EKELAQRLQREG-----TWRHLWR 45 (96)
T ss_pred EEeeC-CCCCCHHHHHHHHHH-HHHHHHHHHhCC-----eeEEEEE
Confidence 56777 555443 444443 333345667788 5888887
No 221
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.78 E-value=56 Score=20.25 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=38.4
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.. +.++ .-.+..+-.+|++..
T Consensus 19 ~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV---~f~~~~~A~~A~~~l 77 (95)
T 2cqc_A 19 GVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFV---YFENVDDAKEAKERA 77 (95)
T ss_dssp EEESCCSSCCHHHHHHHHH-TTSCEEEEEEEECSSSSSEEEEEEE---EESSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCcccEEEE---EECCHHHHHHHHHHh
Confidence 3568999999999998886 4788777777 43 2443 3432 346888888888863
No 222
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=43.70 E-value=24 Score=23.82 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=24.2
Q ss_pred EEEEEEeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 48 IMCCIQADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 48 m~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++|.|..||+.+.+.+ .-+|-.+|.+|+++-
T Consensus 8 itikiqrdgqeieidi--rvstgkeleralqel 38 (96)
T 2jvf_A 8 ITIKIQRDGQEIEIDI--RVSTGKELERALQEL 38 (96)
T ss_dssp EEEEEEETTEEEEEEE--ECCSSSHHHHHHHHH
T ss_pred EEEEEeeCCeEEEEEE--EEcccHHHHHHHHHH
Confidence 5666688999988888 446888888888774
No 223
>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, PTP synthase, PTPS, lyase; 2.33A {Pseudomonas aeruginosa} PDB: 3qn0_A 3qn9_A 3qna_A*
Probab=42.90 E-value=37 Score=24.43 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHhhccCCcccCCCC--CCCHHHHHhHH
Q psy2972 3 DLDQLLTETKEAIKNIRTQNTLSHLPQ--DVTVEEIKSEM 40 (143)
Q Consensus 3 ~~~~~~~~~~~~l~~il~d~~L~dlp~--~~t~~ev~~~i 40 (143)
|..++-+.+++.+ .-++-.+|+|+|+ ++|.|-+-..|
T Consensus 71 Df~~lk~~~~~vi-~~lDH~~Lndv~~~~~pTaEnlA~~i 109 (138)
T 2oba_A 71 DFAEIKAIFKPIY-EQLDHNYLNDIPGLENPTSENLCRWI 109 (138)
T ss_dssp CHHHHHHHHHHHH-HHHTTSBGGGSTTCSSCCHHHHHHHH
T ss_pred eHHHHHHHHHHHH-HhCCCccchhcCCCCCCCHHHHHHHH
Confidence 6677778888766 6678899999984 68888766655
No 224
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=42.45 E-value=30 Score=23.35 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=37.7
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeC-Cce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QAD-NKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~-g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
...||.++|-++|...++ .+|.-..+.+ +.. |++ +.++ .-.+..+-.+|++..
T Consensus 5 V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~g~afV---~f~~~~~a~~A~~~l 61 (166)
T 3md3_A 5 VGNLDKAITEDILKQYFQ-VGGPIANIKIMIDKNNKNVNYAFV---EYHQSHDANIALQTL 61 (166)
T ss_dssp EEEEETTCCHHHHHHHHG-GGSCEEEEEEECCCC-CCEEEEEE---EESSHHHHHHHHHHH
T ss_pred ECCCCCcCCHHHHHHHHH-hcCCeEEEEEEECCCCCCCCEEEE---EeCCHHHHHHHHHHc
Confidence 467999999999999887 7888766777 322 333 3432 346888999998764
No 225
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=42.26 E-value=52 Score=22.43 Aligned_cols=52 Identities=10% Similarity=0.203 Sum_probs=37.5
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
...||..+|-+++....+ .+|.-..+.+ +. +|.+ +.++ .-.+..+-.+|++.
T Consensus 99 v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV---~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 99 IGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSATGLSKGYAFC---EYVDINVTDQAIAG 155 (172)
T ss_dssp EECCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCSEEEEEEE---EESSTTHHHHHHHH
T ss_pred EEcCCCcCCHHHHHHHHH-hcCCceEEEEEecCCCCCcceEEEE---EeCCHHHHHHHHHH
Confidence 457999999999999888 7898777777 54 4544 3332 23567777778776
No 226
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=42.14 E-value=68 Score=20.76 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=38.3
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+...||.++|-++|...++ .+|.-..+.|-.+| +.++. -++..+..+||+.
T Consensus 19 ~V~nLp~~~t~~~l~~~F~-~~G~i~~~~i~~~g--~afV~---f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 19 VVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRDG--TGVVE---FVRKEDMTYAVRK 69 (108)
T ss_dssp EEESCCSSCCHHHHHHHHG-GGSCEEEEEEETTT--EEEEE---ESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEeEEEEecCC--EEEEE---ECCHHHHHHHHHH
Confidence 3568999999999998887 78887778883343 34322 3688999999986
No 227
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=41.78 E-value=78 Score=22.23 Aligned_cols=54 Identities=9% Similarity=0.090 Sum_probs=39.4
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||..+|-++|...++ .+|.-..+.| +. +|.+ +.++ .-.+..+-.+||+..
T Consensus 76 ~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV---~f~~~~~A~~Ai~~l 134 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFC-DYGEIKNIHLNLDRRTGFSKGYALV---EYETHKQALAAKEAL 134 (165)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTSSEEEEEEE---EESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHhh-cCCCEEEEEEEecCCCCcEeeEEEE---EECCHHHHHHHHHHh
Confidence 3458999999999998885 6788777777 43 4444 4443 346889999998863
No 228
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=41.57 E-value=95 Score=22.88 Aligned_cols=67 Identities=6% Similarity=0.062 Sum_probs=38.3
Q ss_pred EEEecCCCCcHHHHHHHHHHHHhHhHhh---cccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEEEeee
Q psy2972 60 DIVISPKNTRVSDLKRTIERQITMQMKR---KGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVKRL 136 (143)
Q Consensus 60 ~V~V~~~~aTV~dLK~aI~~~~~~~~~r---eg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~fv~rl 136 (143)
++++ +. +||.+|.+.+...+.-.... +++ +.......-+|+... . ..-.++-+++||+|.|..-+
T Consensus 17 ~~ev-~~-~TV~dLl~~L~~~~p~l~~~l~~~~~--------l~~~v~VaVNg~~v~-~-~~~~dt~L~dGDeVai~PpV 84 (168)
T 1v8c_A 17 QLEL-PG-ATVGEVLENLVRAYPALKEELFEGEG--------LAERVSVFLEGRDVR-Y-LQGLSTPLSPGATLDLFPPV 84 (168)
T ss_dssp EEEC-CC-SBHHHHHHHHHHHCGGGHHHHEETTE--------ECTTCEEEETTEEGG-G-TTGGGCBCCTTCEEEEECSC
T ss_pred eEEE-CC-CcHHHHHHHHHhhChhhhhhhhcccc--------cCCcEEEEECCEECC-C-cCCCccCCCCCCEEEEECcc
Confidence 5567 55 89999999998764211000 000 112233444665542 1 12234569999999998765
Q ss_pred cc
Q psy2972 137 KD 138 (143)
Q Consensus 137 r~ 138 (143)
-|
T Consensus 85 sG 86 (168)
T 1v8c_A 85 AG 86 (168)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 229
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=41.49 E-value=46 Score=21.98 Aligned_cols=51 Identities=6% Similarity=0.128 Sum_probs=37.5
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTI 77 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI 77 (143)
+...||.++|-++|...++ .+|.-..+.+ +. +|.+ +.++. -.+..+..+|+
T Consensus 40 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~---f~~~~~a~~A~ 95 (124)
T 2jwn_A 40 YVGNVDYGSTAQDLEAHFS-SCGSINRITILCDKFSGHPKGYAYIE---FAERNSVDAAV 95 (124)
T ss_dssp EEEEECTTCCHHHHHHHHH-TTSCEEEEEEEEECTTSSCEEEEEEE---ESSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcccEEEEE---ECCHHHHHHHH
Confidence 4568999999999998887 6888777777 43 4544 44433 46788888888
No 230
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.36 E-value=23 Score=23.34 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=37.9
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCC--ceEEEEecCCCCcHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADN--KKFDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g--~~~~V~V~~~~aTV~dLK~aI~~ 79 (143)
...||.++|-++|...++ .+|.-..+.+ +..+ +.+.++- -.+..+-.+|++.
T Consensus 34 V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~kg~afV~---f~~~~~A~~Ai~~ 88 (109)
T 2err_A 34 VSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNERGSKGFGFVT---FENSADADRAREK 88 (109)
T ss_dssp EESCCTTCCHHHHHHHGG-GTCCCSCEEECCBTTBCTTEEEEE---CCCSHHHHHHHHH
T ss_pred EECCCCcCCHHHHHHHHH-hcCCEEEEEEEECCCCCceEEEEE---ECCHHHHHHHHHH
Confidence 457999999999998876 6888777777 5443 3355543 3577888888876
No 231
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=41.10 E-value=74 Score=20.82 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=38.8
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.+ +.++ .-.+..+-.+|++..
T Consensus 30 ~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV---~F~~~~~A~~Ai~~l 88 (108)
T 2jrs_A 30 YVGSLHFNITEDMLRGIFE-PFGRIESIQLMMDSETGRSKGYGFI---TFSDSECAKKALEQL 88 (108)
T ss_dssp EEECCCSSCCHHHHHHHHT-TTSCEEEEEEEEETTTTEEEEEEEE---EESCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEE---EECCHHHHHHHHHHc
Confidence 3568999999999998885 6788777777 43 3443 4432 346888888888763
No 232
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=40.96 E-value=50 Score=21.88 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=38.1
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-++|...++ .+|.-..+.|-.+ -+.++. -++..+..+||+..
T Consensus 20 ~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~--g~afV~---f~~~~~a~~Ai~~l 71 (115)
T 3beg_B 20 VVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD--GTGVVE---FVRKEDMTYAVRKL 71 (115)
T ss_dssp EEEECCSSCCTTHHHHHHG-GGSCEEEEEECTT--SEEEEE---ESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEecC--CEEEEE---ECCHHHHHHHHHHh
Confidence 3558999999999998876 7888777777333 334322 36889999999874
No 233
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=39.37 E-value=54 Score=23.24 Aligned_cols=47 Identities=19% Similarity=0.407 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHH
Q psy2972 27 LPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 27 lp~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+|.-+..+||..-..-.+|+.|.+.-+ +..+.|.+ .|=.||-+||+-
T Consensus 47 f~RPvkf~dl~qkv~~afGq~ldl~y~--nnEL~IPL----~~Q~DLDkAvel 93 (111)
T 2c60_A 47 FSRPVKYEDVEHKVTTVFGQPLDLHYM--NNELSILL----KNQDDLDKAIDI 93 (111)
T ss_dssp ECSSCCHHHHHHHHHHHHSSCCEEEEE--CSSCEEEC----CSHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEe--cceEEEec----ccHHHHHHHHHH
Confidence 678899999999999999999999885 33344433 678899999987
No 234
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=39.27 E-value=11 Score=24.19 Aligned_cols=53 Identities=26% Similarity=0.445 Sum_probs=37.5
Q ss_pred cccCCCCCCCHHHHHhHHhhccC-CcEEEEE-E--eCCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHG-QSIMCCI-Q--ADNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g-~am~l~V-k--~~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+| .-..|.| + .+|.+ |.++- -++..+-.+|++.
T Consensus 5 ~v~nLp~~~te~~l~~~F~-~~G~~v~~v~i~~d~~t~~~rg~aFV~---F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 5 MLRMLPQAATEDDIRGQLQ-SHGVQAREVRLMRNKSSGQSRGFAFVE---FSHLQDATRWMEA 63 (91)
T ss_dssp EEETCCSSCCHHHHHHHHH-HHTCCCSBCCSSSCSSSCCCSSEEEEE---CSSHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-HhCCEeEEEEEEecCCCCCcCceEEEE---ecCHHHHHHHHHh
Confidence 4678999999999999886 567 4444555 3 33443 55533 4688898888875
No 235
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=39.26 E-value=64 Score=19.59 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=37.9
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCC-----ceEEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADN-----KKFDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g-----~~~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-+++...++ .+|.-..+.+ +... +.+.++. -.+..+-.+|++.
T Consensus 8 ~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~~~~~~g~afV~---f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 8 HIGRLTRNVTKDHIMEIFS-TYGKIKMIDMPVERMHPHLSKGYAYVE---FENPDEAEKALKH 66 (88)
T ss_dssp EEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTEEEEECSEEEEE---ESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEeCCCCCCCCCcEEEEE---EecHHHHHHHHHH
Confidence 4568999999999998875 5888777777 5431 2244432 3678888888886
No 236
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.40 E-value=16 Score=23.53 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=36.8
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeC--Cce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QAD--NKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~--g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.-..+.+ +.. |.+ +.++- -.+..+-.+|++.
T Consensus 17 ~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~---f~~~~~A~~A~~~ 74 (103)
T 2dnm_A 17 KVDNLTYRTSPDSLRRVFE-KYGRVGDVYIPREPHTKAPRGFAFVR---FHDRRDAQDAEAA 74 (103)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEECCBCSSSCSBCSCEEEE---ESSSSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCCCeEEEEE---ECCHHHHHHHHHH
Confidence 3568999999999998887 6888777777 432 332 44332 2566777788875
No 237
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=38.20 E-value=65 Score=20.74 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=26.3
Q ss_pred CHHHHHhHHhhc-cCCcEEEEEEeCCceEEEEe
Q psy2972 32 TVEEIKSEMELL-HGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 32 t~~ev~~~ial~-~g~am~l~Vk~~g~~~~V~V 63 (143)
+.+++...++-. .|+.++|+|.++|+.+.+.+
T Consensus 38 ~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v 70 (94)
T 2kl1_A 38 TSEQIVSYVREKQAGDRVRVTFIRDRKQHEAEL 70 (94)
T ss_dssp CHHHHHHHHHHSCTTCCEEEEEEETTEEEEEEE
T ss_pred CHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEE
Confidence 568888888764 68999999966899888888
No 238
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=38.17 E-value=54 Score=22.64 Aligned_cols=85 Identities=7% Similarity=0.100 Sum_probs=46.9
Q ss_pred ccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcc--ccccccc-ccc-----cceEEEee-CCccc
Q psy2972 43 LHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKG--LSKQISW-RHV-----WKSYWLSF-DGIKL 112 (143)
Q Consensus 43 ~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg--~~~~IsW-~~v-----w~~~~Lif-~gkkL 112 (143)
+-.++++|.| ..++..-.+.|.+...|+.|+=++.. .+..+ ++ |+ +|.= ..+ =+.||... +|+.+
T Consensus 4 ~g~k~i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~~---~ve~e-~s~~G~-fITsI~G~~ad~~~~~yW~~~vng~~~ 78 (101)
T 3u7z_A 4 EGEKHITVTVIHGDQTENVFEFDTDAKYLGEVLESEN---LVDGE-SGEYGL-FITTVDEETADDSKQQWWCITKGGEQV 78 (101)
T ss_dssp -CCEEEEEEEECTTSCEEEEEEEECCSBHHHHHHHTT---CEEEE-CCTTSC-EEEEETTEECCGGGTEEEEEEETTEEC
T ss_pred cceeEEEEEEEcCCCceeEEEEcCCccHHHHHHHHcC---ccccc-cccccc-eEEEEcCEecCCCCCCEEEEEECCEEh
Confidence 3346789999 76776655556445577877655444 22211 11 00 0000 000 02444444 55555
Q ss_pred ccccchhhhhCCCCCCEEEEEee
Q psy2972 113 TNEKSLLSELGIESQCEITFVKR 135 (143)
Q Consensus 113 ~~d~~tL~dyGI~~g~tl~fv~r 135 (143)
..-..+|-++|||.+.|...
T Consensus 79 ---~~Ga~~~~v~dGD~i~~~~t 98 (101)
T 3u7z_A 79 ---NTSADQTPVSDGDAFELTLK 98 (101)
T ss_dssp ---CSCGGGCBCCTTCEEEEEEE
T ss_pred ---hhchhheEecCCCEEEEEEe
Confidence 34678899999999999754
No 239
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=38.04 E-value=53 Score=20.06 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=44.0
Q ss_pred CCcHHHHHHHHHHHHHhhccCCcccCCCCCCCH-HH--HHhHHhhccCCcEEEEEEeCCceEEEEec----CCCCcHHHH
Q psy2972 1 MKDLDQLLTETKEAIKNIRTQNTLSHLPQDVTV-EE--IKSEMELLHGQSIMCCIQADNKKFDIVIS----PKNTRVSDL 73 (143)
Q Consensus 1 ~~~~~~~~~~~~~~l~~il~d~~L~dlp~~~t~-~e--v~~~ial~~g~am~l~Vk~~g~~~~V~V~----~~~aTV~dL 73 (143)
|-+.+++.+.+.+.+..++.-+ -.++.++.++ ++ ++|+-+++.-..+ .+.|.+.++ ....||.+|
T Consensus 1 Mm~~~~i~~~l~~ii~~~l~~~-~~~i~~~~~l~~dlG~DSl~~~el~~~l-------e~~fgi~i~~~~~~~~~Tv~~l 72 (81)
T 2lol_A 1 MSTTDKIEQKVIEMVAEKLNKD-KAIITTDSRFIEDLKADSLDTVELMMAI-------EVEYGIDIPDDEATKIKTVSDV 72 (81)
T ss_dssp CCSHHHHHHHHHHHHHHHSCCC-TTTCCTTCCHHHHTTCCHHHHHHHHHHH-------HHHHCCCCCGGGGGGSSSHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCC-hhhCCCCCcHHHhcCCcHHHHHHHHHHH-------HHHHCCCCCHHHHHHcCCHHHH
Confidence 5678889999999999998832 2567777777 45 5666555322110 011111110 244789998
Q ss_pred HHHHHHH
Q psy2972 74 KRTIERQ 80 (143)
Q Consensus 74 K~aI~~~ 80 (143)
-..|.++
T Consensus 73 ~~~i~~~ 79 (81)
T 2lol_A 73 IKYIKER 79 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887764
No 240
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=37.69 E-value=72 Score=21.14 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=40.0
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeC--Cce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QAD--NKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~--g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-+++....+ .+|.-..+.| +.. |++ |.++. -.+..+-++||+.-
T Consensus 10 fV~nL~~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~aFV~---f~~~~~A~~Ai~~l 68 (110)
T 3s8s_A 10 TFARLNDNVRETFLKDMCR-KYGEVEEVEILLHPRTRKHLGLARVL---FTSTRGAKETVKNL 68 (110)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEE---ESSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCceeeEEEEE---ECCHHHHHHHHHHh
Confidence 3468999999999998875 7898888887 433 444 55433 36788999999874
No 241
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=37.61 E-value=64 Score=22.53 Aligned_cols=47 Identities=30% Similarity=0.505 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHH
Q psy2972 27 LPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 27 lp~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+|.-+..+||..-..-.+|+.|.+.-+ +.. +.| +-.+=.||-+||+-
T Consensus 36 f~RPv~f~el~~kv~~afGq~ldl~y~--nnE--L~i--PL~~Q~DLDkAvel 82 (100)
T 2npt_B 36 FPRPVKLEDLRSKAKIAFGQSMDLHYT--NNE--LVI--PLTTQDDLDKAVEL 82 (100)
T ss_dssp ECSSCCHHHHHHHHHHHHTSCEEEEEE--ETT--EEE--ECCCHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEe--cce--eEE--ecccHHHHHHHHHH
Confidence 678899999999999999999999885 232 344 33688999999987
No 242
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.48 E-value=82 Score=20.29 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=38.6
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-++|...++ .+|.-..+.+..+ +.+.++- -.+..+-.+|++..
T Consensus 29 ~V~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~-~g~afV~---f~~~~~a~~A~~~l 81 (109)
T 1x4g_A 29 YCGGIASGLTDQLMRQTFS-PFGQIMEIRVFPE-KGYSFVR---FSTHESAAHAIVSV 81 (109)
T ss_dssp EEECCSSCCCHHHHHHHHH-HHSCEEEEEEETT-TTEEEEE---ESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeCC-CCEEEEE---ECCHHHHHHHHHHc
Confidence 3568999999999998887 6898778888333 3344432 36788888888763
No 243
>1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, PTE synthesis; HET: BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB: 1b6z_A 1gtq_A 3i2b_A
Probab=37.43 E-value=68 Score=22.91 Aligned_cols=55 Identities=24% Similarity=0.257 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHHHhhccCCccc-CCCC----CCCHHHHHhHH------hhccCCcEEEEE-EeCCc
Q psy2972 3 DLDQLLTETKEAIKNIRTQNTLS-HLPQ----DVTVEEIKSEM------ELLHGQSIMCCI-QADNK 57 (143)
Q Consensus 3 ~~~~~~~~~~~~l~~il~d~~L~-dlp~----~~t~~ev~~~i------al~~g~am~l~V-k~~g~ 57 (143)
|..++-+++++.+..-++-.+|+ |+|. .+|.|-+--.| .|..++-.+|+| -.+..
T Consensus 67 Df~~lK~~i~~~i~~~lDH~~Ln~dvp~f~~~~pTaEnlA~~i~~~l~~~l~~~~l~~V~v~Et~~~ 133 (140)
T 1b66_A 67 NLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQRLLPVGALYKVKVYETDNN 133 (140)
T ss_dssp CHHHHHHHHHHHTHHHHTTEEHHHHCGGGTSSCCCHHHHHHHHHHHHHHHSCTTCEEEEEEEEETTE
T ss_pred EHHHHHHHHHHHHhhcCCCCcccccCcccCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEEeCCCC
Confidence 56677777777676778888899 8873 78988776655 223334677777 44443
No 244
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=37.26 E-value=88 Score=20.96 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=37.7
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+..||.++|-++|...++ .+|.-..+.+ +. +|.+ +.++. -.+..+..+|++.
T Consensus 47 V~nLp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~---f~~~~~a~~A~~~ 103 (139)
T 1u6f_A 47 VNYIPTTVDEVQLRQLFE-RYGPIESVKIVCDRETRQSRGYGFVK---FQSGSSAQQAIAG 103 (139)
T ss_dssp EESCSTTCCHHHHHHHHH-HHSCEEEEEEEEETTTTEEEEEEEEE---ESSHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEE---ECCHHHHHHHHHH
Confidence 558999999999998875 5788777777 44 2433 44432 3688888888886
No 245
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=37.17 E-value=44 Score=24.84 Aligned_cols=27 Identities=4% Similarity=0.066 Sum_probs=22.7
Q ss_pred cEEEEEEeCCceEEEEecCCCCcHHHHH
Q psy2972 47 SIMCCIQADNKKFDIVISPKNTRVSDLK 74 (143)
Q Consensus 47 am~l~Vk~~g~~~~V~V~~~~aTV~dLK 74 (143)
.|+|+++.+|+.+.+.+ ++..|+.+.=
T Consensus 3 ~~~i~~~vNG~~~~~~v-~~~~tLLd~L 29 (166)
T 1n62_A 3 KAHIELTINGHPVEALV-EPRTLLIHFI 29 (166)
T ss_dssp CEEEEEEETTEEEEEEE-CTTCBHHHHH
T ss_pred CceEEEEECCEEEEEec-CCCCcHHHHH
Confidence 36778889999999999 8889998843
No 246
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.16 E-value=80 Score=20.08 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=36.4
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+...||.++|-++|...++ .+|.-..+.+ +. +|.+ +.++- -.+..+..+|++.
T Consensus 20 ~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~---f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 20 FVGGLDWSTTQETLRSYFS-QYGEVVDCVIMKDKTTNQSRGFGFVK---FKDPNCVGTVLAS 77 (105)
T ss_dssp CCBSCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEE---ESSTTHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeCCCCCCcceEEEEE---ECCHHHHHHHHHh
Confidence 4568999999999998876 5788777777 43 3443 44332 2456677777765
No 247
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.97 E-value=40 Score=21.55 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=38.0
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.+ +.++- -++..+..+|++.
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~---f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 19 YVGGLDEKVSEPLLWELFL-QAGPVVNTHMPKDRVTGQHQGYGFVE---FLSEEDADYAIKI 76 (105)
T ss_dssp EEECCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCSBCSCEEEE---ESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCcCCcEEEEE---ECCHHHHHHHHHH
Confidence 3568999999999988876 5788777777 43 3333 44322 3688898888876
No 248
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=36.97 E-value=90 Score=20.63 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=37.9
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
...||.++|-++|....+ .+|.-..|.+ + ++.+.++- -.+..+-.+|++..
T Consensus 20 V~nLp~~~te~~L~~~F~-~fG~V~~v~i~~--~kg~aFVe---f~~~~~A~~Ai~~l 71 (104)
T 1wex_A 20 VRGLCESVVEADLVEALE-KFGTICYVMMMP--FKRQALVE---FENIDSAKECVTFA 71 (104)
T ss_dssp EESCCSSCCHHHHHHHHT-TTSCEEEEEEET--TTTEEEEE---ESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hCCCEEEEEEEC--CCCEEEEE---ECCHHHHHHHHHHh
Confidence 458999999999987775 7898777777 4 34455533 36788888888763
No 249
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.78 E-value=27 Score=21.95 Aligned_cols=53 Identities=9% Similarity=0.169 Sum_probs=37.5
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEE-EE-E--eCCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMC-CI-Q--ADNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l-~V-k--~~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.-..+ .| + .+|.+ +.++- -.+..+-.+|++.
T Consensus 9 ~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~i~~~~~~g~~~g~afV~---f~~~~~A~~A~~~ 67 (96)
T 1x5t_A 9 FIGNLDPEIDEKLLYDTFS-AFGVILQTPKIMRDPDTGNSKGYAFIN---FASFDASDAAIEA 67 (96)
T ss_dssp EEECCCTTCCHHHHHHHHH-TTSCBSSCCEECCCTTTCSCCSEEEEE---BSSHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEEcCCCCCcCeEEEEE---ECCHHHHHHHHHH
Confidence 4568999999999998876 57876666 66 4 33443 55433 3678888888875
No 250
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=36.76 E-value=1e+02 Score=22.39 Aligned_cols=54 Identities=15% Similarity=0.324 Sum_probs=40.7
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||..+|-++|...++ .+|.-..+.| +..+.+ +-++ .-.+..+-.+||+.-
T Consensus 107 ~v~nl~~~~t~~~l~~~F~-~~G~i~~~~i~~d~~~~~g~~fV---~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 107 FIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDENGSKGYGFV---HFETQEAAERAIEKM 163 (213)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEETTEEEEEEEE---EESSHHHHHHHHHHH
T ss_pred eECCcccccHHHHHHHHHh-hcCCeEEEEeeccCCCCceEEEE---EeCCHHHHHHHHHHh
Confidence 4558999999999998886 6888888888 655544 4332 346889999999873
No 251
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.00 E-value=77 Score=19.58 Aligned_cols=51 Identities=24% Similarity=0.385 Sum_probs=36.9
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-++|...++ .+|.-..+.+..+ +.++- -.+..+-.+|++..
T Consensus 13 ~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~~~~---~afV~---f~~~~~a~~A~~~l 63 (90)
T 2dnp_A 13 FVGNVSAACTSQELRSLFE-RRGRVIECDVVKD---YAFVH---MEKEADAKAAIAQL 63 (90)
T ss_dssp EEESCCTTCCHHHHHHHHH-HHSCEEEEEECSS---CEEEE---ESCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-cCCCEEEEEEECC---EEEEE---ECCHHHHHHHHHHh
Confidence 3568999999999998886 6888777777222 33322 36888889998863
No 252
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.99 E-value=51 Score=21.00 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=38.2
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeC--CceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QAD--NKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~--g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.+ +.. ++-+.++- -.+..+-.+|++..
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~g~afV~---f~~~~~a~~A~~~l 75 (103)
T 2cqi_A 19 YVGNLSRDVTEVLILQLFS-QIGPCKSCKMITEHTSNDPYCFVE---FYEHRDAAAALAAM 75 (103)
T ss_dssp EEESCCTTCCHHHHHHHHH-HHSCEEEEEEECCCCSSCCEEEEE---ESSHHHHHHHHHHH
T ss_pred EEeCCCccCCHHHHHHHHH-hcCCEeEEEEEecCCCCCCEEEEE---ECCHHHHHHHHHHh
Confidence 3558999999999988774 5787777777 432 23355433 36888888888863
No 253
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=35.72 E-value=1.1e+02 Score=21.64 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=39.4
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.| +. +|.+--+-. -.-.+..+-.+|++.-
T Consensus 129 ~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~af-V~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 129 YVASVHQDLSDDDIKSVFE-AFGKIKSATLARDPTTGKHKGYGF-IEYEKAQSSQDAVSSM 187 (216)
T ss_dssp EEECCCTTCCHHHHHHHHT-TSSCEEEEEEEECTTTCCEEEEEE-EEESSHHHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcCceEE-EEecCHHHHHHHHHHc
Confidence 3458999999999998885 6888777887 54 344422222 1347889999998874
No 254
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.58 E-value=30 Score=20.68 Aligned_cols=53 Identities=13% Similarity=0.290 Sum_probs=35.7
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+...||.++|-+++....+ .+|.-..+.+ +. +|.+ +.++ .-.+..+-.+|++.
T Consensus 4 ~v~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV---~f~~~~~a~~a~~~ 61 (77)
T 1uaw_A 4 FIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFV---TFMDQAGVDKVLAQ 61 (77)
T ss_dssp EEESCCSSCCSHHHHHHHT-TTSCCCCEEEECCCCSSSCSSEEEE---CCCCTTHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEecCCCCCCcCceEEE---EEcCHHHHHHHHHh
Confidence 4568999999999998876 5777666666 32 3433 5543 33466677777765
No 255
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=35.49 E-value=50 Score=24.47 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=22.0
Q ss_pred EEEEEEeCCceEEEEecCCCCcHHHHH
Q psy2972 48 IMCCIQADNKKFDIVISPKNTRVSDLK 74 (143)
Q Consensus 48 m~l~Vk~~g~~~~V~V~~~~aTV~dLK 74 (143)
|.|+++.+|+.+.+.+ ++..|+.+.=
T Consensus 4 ~~i~~~vNG~~~~~~v-~~~~tLLd~L 29 (163)
T 1ffv_A 4 KIITVNVNGKAQEKAV-EPRTLLIHFL 29 (163)
T ss_dssp EEEEEEETTEEEEEEE-CTTCBHHHHH
T ss_pred ceEEEEECCEEEEEec-CCCCcHHHHH
Confidence 5677789999999999 8888998843
No 256
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=35.36 E-value=84 Score=19.81 Aligned_cols=52 Identities=10% Similarity=0.010 Sum_probs=37.0
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+...||.++|-+++...++ .+|.-..+.+. ..+.+.++. -.+..+-.+|+..
T Consensus 31 ~V~nlp~~~~~~~l~~~f~-~~G~i~~~~~~-~~~g~afV~---f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 31 YIGNIPHFATEADLIPLFQ-NFGFILDFKHY-PEKGCCFIK---YDTHEQAAVCIVA 82 (101)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCCSEEEEE-TTTTEEEEE---CSSHHHHHHHHHH
T ss_pred EEcCCCcccCHHHHHHHHH-hCCCEEEEEEe-cCCCEEEEE---ECCHHHHHHHHHH
Confidence 3568999999999998875 67887777772 123344433 3678888888876
No 257
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.23 E-value=79 Score=19.51 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=36.7
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee-CCce--EEEEecCCCCcHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA-DNKK--FDIVISPKNTRVSDLKRTIE 78 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~-~g~~--~~V~V~~~~aTV~dLK~aI~ 78 (143)
++..||.++|-++|...++-- ....+.+ +. +|++ +.++. -.+..+..+|++
T Consensus 14 ~v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~~~g~~~g~afV~---f~~~~~a~~A~~ 68 (91)
T 2dgw_A 14 KLRGAPFNVTEKNVMEFLAPL--KPVAIRIVRNAHGNKTGYIFVD---FSNEEEVKQALK 68 (91)
T ss_dssp EEECCCSSCCHHHHHHHHTTS--CCSEEEEEECTTSCEEEEEEEE---CSSHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHhhC--CceEEEEEECCCCCCceEEEEE---ECCHHHHHHHHH
Confidence 356899999999999888744 5667777 43 3544 55533 468888888887
No 258
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=35.13 E-value=64 Score=20.03 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=35.3
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCc--EEEEE-EeCCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQS--IMCCI-QADNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~a--m~l~V-k~~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.. ..+.. +.+|.. +.++ .-.+..+..+|++.
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~g~~~g~afV---~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 19 KVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMV---AFESRDEATAAVID 76 (95)
T ss_dssp EEECCCTTCCHHHHHHHTT-TSCBCTTCCEEEECTTSCEEEEEEE---EESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCccceEEEEeCCCCCEeeEEEE---EECCHHHHHHHHHH
Confidence 3568999999999998775 45653 33333 344544 4432 34688899999886
No 259
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.07 E-value=45 Score=21.14 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=38.7
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-E--eCCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-Q--ADNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k--~~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.+ + .+|.. +.++ .-.+..+-.+|++..
T Consensus 16 ~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV---~f~~~~~A~~A~~~l 74 (102)
T 2cqb_A 16 YVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFV---EFELAEDAAAAIDNM 74 (102)
T ss_dssp EEESCCSSCCHHHHHHHHT-TTSCCCCEECCCCSSSCCCSSEEEE---CCSSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHhh-ccCCEEEEEEEecCCCCCcceEEEE---EECCHHHHHHHHHHh
Confidence 3568999999999998886 4787666777 3 23433 4443 457889999998763
No 260
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=35.02 E-value=70 Score=20.58 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=26.6
Q ss_pred HhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 40 MELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 40 ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+.|.-|+. .++|+.+|.+..+.- |++.+|++.|+..
T Consensus 15 ~~L~tG~~-~vsV~ydgr~V~Y~~----asi~~L~~~I~~l 50 (68)
T 1hyw_A 15 HDLMTGKR-VATVQKDGRRVEFTA----TSVSDLKKYIAEL 50 (68)
T ss_dssp HHHTTSCC-CEEEECSSCEEEECT----TTHHHHHHHHHHH
T ss_pred HHHhcCCc-eEEEEECCEEEEEec----CCHHHHHHHHHHH
Confidence 35555764 378866888766644 8999999999885
No 261
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=34.87 E-value=21 Score=23.54 Aligned_cols=54 Identities=11% Similarity=0.160 Sum_probs=37.9
Q ss_pred cccCCCCCCCHHHHHhHHhhccCC--cEEEEE---EeCCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQ--SIMCCI---QADNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~--am~l~V---k~~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||+.+|-++|...++ .+|. ...|.+ +.+|++ |.++- -.+..+-.+|++.-
T Consensus 13 fV~nL~~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~tg~srG~aFV~---f~~~~~A~~Ai~~l 73 (95)
T 2lkz_A 13 ILRNIAPHTVVDSIMTALS-PYASLAVNNIRLIKDKQTQQNRGFAFVQ---LSSAMDASQLLQIL 73 (95)
T ss_dssp EEESCCTTCCHHHHHHHST-TTCCCCGGGEECCCCSSSSSCSSEEEEE---CSSSHHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHH-hhCCccEEEEEEEecCCCCCCceEeEEE---ECCHHHHHHHHHHh
Confidence 4568999999999999886 5674 334555 344554 66644 35788888888874
No 262
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.77 E-value=40 Score=22.07 Aligned_cols=51 Identities=16% Similarity=0.086 Sum_probs=35.9
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee-CCce--EEEEecCCCCcHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA-DNKK--FDIVISPKNTRVSDLKRTIE 78 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~-~g~~--~~V~V~~~~aTV~dLK~aI~ 78 (143)
++..||.++|-+||...++ .+| .+.+.| +. +|++ +.++. -++..+..+|++
T Consensus 19 ~V~nLp~~~te~~l~~~F~-~~G-~~~v~i~~d~~g~~~G~afV~---F~~~~~a~~Al~ 73 (102)
T 1wez_A 19 HMRGLPYRATENDIYNFFS-PLN-PMRVHIEIGPDGRVTGEADVE---FATHEDAVAAMA 73 (102)
T ss_dssp EEESCCTTCCHHHHHHSSC-SCC-CSEEEEEESSSSCEEEEEEEE---CSSSHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-HcC-ceEEEEEECCCCCEeeEEEEE---ECCHHHHHHHHH
Confidence 3568999999999998776 456 446666 32 4554 55543 468888888884
No 263
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.51 E-value=53 Score=21.62 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=37.6
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeC-Cce--EEEEecCCCCcHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QAD-NKK--FDIVISPKNTRVSDLKRTIE 78 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~-g~~--~~V~V~~~~aTV~dLK~aI~ 78 (143)
+...||.++|-++|....+ .+|.-..+.+ +.. |.+ +.++. -++..+..+|+.
T Consensus 15 fV~~Lp~~~te~~L~~~F~-~~G~v~~v~i~~d~~g~~rG~aFV~---F~~~e~a~~Ai~ 70 (103)
T 1s79_A 15 YIKGFPTDATLDDIKEWLE-DKGQVLNIQMRRTLHKAFKGSIFVV---FDSIESAKKFVE 70 (103)
T ss_dssp EEECCCTTCCHHHHHHHHH-TSSCEEEEEEECCCTTSCCCEEEEE---ESSHHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHh-hcCCEEEEEEEECCCCCCccEEEEE---ECCHHHHHHHHH
Confidence 3458999999999998886 6898777888 422 332 55433 357888888887
No 264
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=34.29 E-value=0.69 Score=30.91 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.9
Q ss_pred ccchhhhhCCCCCCEEEEEeeeccc
Q psy2972 115 EKSLLSELGIESQCEITFVKRLKDK 139 (143)
Q Consensus 115 d~~tL~dyGI~~g~tl~fv~rlr~k 139 (143)
+..+|++.||+.||.|.+.+++..|
T Consensus 40 ~~~~Lr~LGi~eGDIIrVmk~l~~k 64 (72)
T 3idw_A 40 NNSMLRTLGLREGDIVRVMKHLDKK 64 (72)
T ss_dssp CHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHcCCchhhHHHHHHHHHHH
Confidence 5789999999999999888887766
No 265
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=33.93 E-value=31 Score=22.66 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=37.2
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+...||.++|-++|...+. .+|.-..+.+ +. +|+. +-++- -.+..+-.++++.
T Consensus 44 ~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~---f~~~~~A~~A~~~ 101 (118)
T 2khc_A 44 FIYHLPQEFTDTDLASTFL-PFGNVISAKVFIDKQTSLSKCFGFVS---FDNPDSAQVAIKA 101 (118)
T ss_dssp EEECSCTTCCHHHHHHHTT-TSCEEEEEEECCCSSSSCCCCEEEEE---EESSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCcCcEEEEE---ECCHHHHHHHHHH
Confidence 3568999999999998887 6888777777 43 2332 44432 2567788888876
No 266
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.85 E-value=97 Score=21.39 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=38.3
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+..||.++|-+||....+ .+|.-..+.| +. +-|.++- -.+..+-.+|++.
T Consensus 36 VgNLp~~vte~dL~~lF~-~fG~V~~v~i~~~--kG~AFVe---F~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 36 IRKLPIDVTEGEVISLGL-PFGKVTNLLMLKG--KNQAFIE---MNTEEAANTMVNY 86 (119)
T ss_dssp EESCCTTCCHHHHHHHHT-TTSCCCEEEEEGG--GTEEEEE---CSCHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEEEEEEeCC--CCEEEEE---ECCHHHHHHHHHH
Confidence 458999999999987765 7999888888 43 4566644 3678888888875
No 267
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=33.77 E-value=54 Score=24.31 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=22.9
Q ss_pred cEEEEEEeCCceEEEEecCCCCcHHHHH
Q psy2972 47 SIMCCIQADNKKFDIVISPKNTRVSDLK 74 (143)
Q Consensus 47 am~l~Vk~~g~~~~V~V~~~~aTV~dLK 74 (143)
.|.|+++.+|+.+.+.+ ++..|+.+.=
T Consensus 3 ~~~i~~~vNG~~~~v~v-~p~~tLLd~L 29 (160)
T 3hrd_D 3 KITINLNLNGEARSIVT-EPNKRLLDLL 29 (160)
T ss_dssp CEEEEEEETTEEEEEEE-CSSSBHHHHH
T ss_pred cceEEEEECCEEEEEec-CCCCCHHHHH
Confidence 37788899999999999 8888998853
No 268
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=33.73 E-value=58 Score=22.04 Aligned_cols=52 Identities=13% Similarity=0.212 Sum_probs=37.3
Q ss_pred ccCCCCCCCHHHHHhHHhhccC-CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHG-QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g-~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~ 79 (143)
...||.++|-+++....+ .+| .-..+.| +...+-|.++- -++..+..+||+.
T Consensus 33 VgnLp~~~te~dL~~~F~-~~G~~v~~v~i~~~~~rGfaFV~---F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 33 MKNLPEGCSWQDLKDLAR-ENSLETTFSSVNTRDFDGTGALE---FPSEEILVEALER 86 (111)
T ss_dssp EECSSCCCCHHHHHHHHH-HHTCCCSEEECSSCSSSCCEEEE---ESSHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHH-HhCCeeEEEEEEcCCCCCEEEEE---ECCHHHHHHHHHH
Confidence 458999999999988775 567 5556666 44444455533 3688999999987
No 269
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=33.57 E-value=1.4e+02 Score=21.97 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=27.6
Q ss_pred cEEEEEEeCCce----EEEEecCCCCcHHHHHHHHHHHHh
Q psy2972 47 SIMCCIQADNKK----FDIVISPKNTRVSDLKRTIERQIT 82 (143)
Q Consensus 47 am~l~Vk~~g~~----~~V~V~~~~aTV~dLK~aI~~~~~ 82 (143)
..++.|.+.+.. =.|.| +.++|..+|=.+|+..|.
T Consensus 8 iy~lrV~L~~~~p~iWRri~V-p~~~TL~~LH~vIq~afg 46 (188)
T 2i1s_A 8 VYHLKLSIKGITPQIWRRIQV-PENYTFLDLHKAIQAVMD 46 (188)
T ss_dssp EEEEEEEETTCSSCEEEEEEE-ETTCBHHHHHHHHHHHTT
T ss_pred EEEEEEEECCCCCCeEEEEEE-CCCCCHHHHHHHHHHHhC
Confidence 456677666532 57888 899999999999999985
No 270
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.31 E-value=92 Score=19.64 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=38.1
Q ss_pred cccCCCCCCCHHHHH----hHHhhccCCcEEEEE-Ee-CCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIK----SEMELLHGQSIMCCI-QA-DNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~----~~ial~~g~am~l~V-k~-~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-+++. ...+ .+|.-..+.| +. .++.+.++- -.+..+-.+|++.-
T Consensus 13 ~V~nL~~~~~~~~l~~~l~~~F~-~~G~v~~v~i~~~~~~rg~afV~---f~~~~~A~~Ai~~l 72 (96)
T 2dgx_A 13 QVSNIDYRLSRKELQQLLQEAFA-RHGKVKSVELSPHTDYQLKAVVQ---MENLQDAIGAVNSL 72 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEECSCCSTTCCEEEE---ESSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHhcc-ccCcEEEEEEEeCCCCCeEEEEE---ECCHHHHHHHHHHh
Confidence 356899999999998 4444 7788778888 33 234455533 36788888888873
No 271
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.13 E-value=92 Score=19.59 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=37.1
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-++|...++ .+|.-..+.+..+ +-+.++- -.+..+-.+|++.-
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~~~-kg~afV~---f~~~~~a~~a~~~l 71 (99)
T 2cpj_A 19 FVGNLPPDITEEEMRKLFE-KYGKAGEVFIHKD-KGFGFIR---LETRTLAEIAKVEL 71 (99)
T ss_dssp EEESCCTTCCHHHHHHHTS-TTCCCSEEEEETT-TTEEEEE---CSSSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHh-hcCCeEEEEEecC-CCEEEEE---ECCHHHHHHHHHHh
Confidence 3558999999999988775 6788777777322 3355433 35677888888763
No 272
>2lez_A Secreted effector protein PIPB2; structural genomics, northeast structural genomics consortiu bacterial effector, virulence factor; NMR {Salmonella enterica subsp}
Probab=32.93 E-value=32 Score=25.58 Aligned_cols=61 Identities=11% Similarity=0.229 Sum_probs=46.6
Q ss_pred CcHHHHHHHHHHHHHhhccCCcccCCCCCCCHHHHHhHH-------hhccCCcEEEEEEeCCceEEEEe
Q psy2972 2 KDLDQLLTETKEAIKNIRTQNTLSHLPQDVTVEEIKSEM-------ELLHGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 2 ~~~~~~~~~~~~~l~~il~d~~L~dlp~~~t~~ev~~~i-------al~~g~am~l~Vk~~g~~~~V~V 63 (143)
|-|+|+|+...++|.....|+ =+-+|...-+|+++..- +-++....+|.|+.+|+...=+|
T Consensus 36 ~~y~e~~e~mt~aL~~~~~d~-~~~~pe~i~l~dinGc~V~Fs~p~~~~~~g~VtVEV~k~g~t~t~eV 103 (145)
T 2lez_A 36 TQYQELIETMAETLKSTMPDR-GAPLPENIILDDMDGCRVEFNLPGENNEAGQVIVRVSKGDHSETREI 103 (145)
T ss_dssp HHHHHHHHHHHHHHHHHSSSS-SSCCCSEEEEEEETTEEEEEECCCTTCSSCEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccCC-CCCCcceEEEeccCCEEEEecCCCccccCCcEEEEEcCCCceeeeee
Confidence 348999999999999999999 55788777777776542 11445557777788899888888
No 273
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=32.81 E-value=47 Score=22.20 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=37.4
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+..||.++|-++|...++ .+|.-..+.+ +. +|.. +.++- -.+..+-.+|++.
T Consensus 68 v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~---f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 68 VGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVE---FELAEDAAAAIDN 124 (140)
T ss_dssp EECCCTTCCHHHHHHHHG-GGSCEEEEECCCCTTTCCCCSEEEEE---ESCHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHH-hcCCEEEEEEeecCCCCCcCcEEEEE---ECCHHHHHHHHHH
Confidence 457999999999998885 5788777777 43 2332 44432 3688888888876
No 274
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=32.77 E-value=86 Score=21.56 Aligned_cols=46 Identities=11% Similarity=0.234 Sum_probs=33.3
Q ss_pred HHhhccCCcEEEEE-EeCCceEE------EEecCCCCcHHHHHHHHHHHHhHhH
Q psy2972 39 EMELLHGQSIMCCI-QADNKKFD------IVISPKNTRVSDLKRTIERQITMQM 85 (143)
Q Consensus 39 ~ial~~g~am~l~V-k~~g~~~~------V~V~~~~aTV~dLK~aI~~~~~~~~ 85 (143)
.|.-.++..+-|.| +..++.++ +.| +.+.||.++-..|.+...+.+
T Consensus 19 ~ir~k~p~~IPVive~~~~~~~p~l~k~KflV-p~~~tv~~~~~~iRk~l~l~~ 71 (110)
T 2r2q_A 19 KIRKKYPDRVPVIVEKAPKARVPDLDKRKYLV-PSDLTVGQFYFLIRKRIHLRP 71 (110)
T ss_dssp HHHHHCTTEEEEEEEECTTCCSCCCSCCEEEE-ETTCBHHHHHHHHHHHTTCCT
T ss_pred HHHHhCCCceEEEEEecCCCCCCccceeEEEe-CCCCcHHHHHHHHHHHhcCCC
Confidence 34456777888999 77655433 467 778999999999998764443
No 275
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=32.46 E-value=48 Score=23.31 Aligned_cols=48 Identities=27% Similarity=0.466 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 27 LPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 27 lp~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+|.-++.+||..-+.-.+|++|.+.-. +..+-|.+ .+=.||=+||+..
T Consensus 24 f~RPv~f~eL~~Kv~~~fGq~ldL~y~--n~EllIpl----~sQeDLDkaIell 71 (103)
T 2cu1_A 24 FPRPVKLEDLRSKAKIAFGQSMDLHYT--NNELVIPL----TTQDDLDKAVELL 71 (103)
T ss_dssp EESSCCHHHHHHHHHHHHSSCEEEEEC--SSSSCEEC----CSHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHHHHHhCCeeeEEEe--cceEEEec----cCHHHHHHHHHHH
Confidence 577899999999999999999988874 33344444 5789999999983
No 276
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=32.44 E-value=76 Score=22.23 Aligned_cols=36 Identities=6% Similarity=0.087 Sum_probs=28.0
Q ss_pred CCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHH
Q psy2972 45 GQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQI 81 (143)
Q Consensus 45 g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~ 81 (143)
.....|.. -=+|-.+++.+ +.++|+.++|..+-+.-
T Consensus 17 ~~~v~v~~LlPnGi~i~l~~-~~~~tl~eiK~~lw~eA 53 (108)
T 2v1y_A 17 PPRILVECLLPNGMIVTLEC-LREATLITIKHELFKEA 53 (108)
T ss_dssp CSEEEEEEECTTSCEEEEEE-ETTCBHHHHHHHHHHHG
T ss_pred CCcEEEEEEcCcEEEEEEEe-eccccHHHHHHHHHHHH
Confidence 34455555 44588999999 88999999999887754
No 277
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=32.35 E-value=1.3e+02 Score=21.26 Aligned_cols=53 Identities=8% Similarity=0.124 Sum_probs=39.7
Q ss_pred cccCCCCCCCHHHHHhHHhhccC--CcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHG--QSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g--~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+...||.++|-++|...++ .+| .-..+.| +. +|.+ |-++. -.+..+..+||+.
T Consensus 59 fVgnLp~~~te~~L~~~F~-~~G~i~v~~v~i~~d~~tg~skGfaFV~---f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 59 YVGSFSWWTTDQQLIQVIR-SIGVYDVVELKFAENRANGQSKGYAEVV---VASENSVHKLLEL 118 (156)
T ss_dssp EEECCCTTCCHHHHHHHHH-HTTCCCEEEEEEEECTTTCCEEEEEEEE---ESCHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-HHCCccEEEEEEEecCCCCccceEEEEE---ECCHHHHHHHHHH
Confidence 4558999999999998884 688 7777777 43 5655 55543 3688899999887
No 278
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=32.10 E-value=72 Score=19.97 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=35.4
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCc--EEEEE-EeCCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQS--IMCCI-QADNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~a--m~l~V-k~~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.- ..+.. +.+|.+ +.++ .-.+..+-.+|++.
T Consensus 19 ~v~nLp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~g~~~g~afV---~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 19 KVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMV---AFESRDEATAAVID 76 (98)
T ss_dssp EEESCCTTCCHHHHHHHTT-TSCCCTTTCEEEECSSSCEEEEEEE---EESCHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-HcCCccceEEEEECCCCCeeeEEEE---EECCHHHHHHHHHH
Confidence 3568999999999998875 45553 23333 445544 4443 24688888888876
No 279
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=31.87 E-value=40 Score=21.58 Aligned_cols=54 Identities=7% Similarity=0.162 Sum_probs=38.4
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-++|...++ .+|.-..+.+ +. +|.+ +.++- -.+..+-.+|++..
T Consensus 17 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~---f~~~~~A~~A~~~l 75 (106)
T 2dgp_A 17 FIGQIPRNLDEKDLKPLFE-EFGKIYELTVLKDRFTGMHKGCAFLT---YCERESALKAQSAL 75 (106)
T ss_dssp EEESCCTTCCHHHHHHHHH-HHSCCCEEECCCCSSSCSCCSEEEEE---ESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEecCCCCCcceEEEEE---ECCHHHHHHHHHHh
Confidence 3568999999999998876 5787777777 42 2332 44432 36888888998863
No 280
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.78 E-value=70 Score=20.68 Aligned_cols=52 Identities=12% Similarity=0.065 Sum_probs=34.5
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCc----EEEEEEeCCc--eEEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQS----IMCCIQADNK--KFDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~a----m~l~Vk~~g~--~~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.- +.+.+ .+|. -+.++. -.+..+-.+|++.
T Consensus 29 ~V~nLp~~~t~~~l~~~f~-~~G~v~~~~~~~~~-~~g~~~g~afV~---f~~~~~a~~Ai~~ 86 (115)
T 2cpx_A 29 YLKNLSPRVTERDLVSLFA-RFQEKKGPPIQFRM-MTGRMRGQAFIT---FPNKEIAWQALHL 86 (115)
T ss_dssp EEECCCTTCCHHHHHHHTH-HHHHSSSSCCEEEE-ECSSSCSEEEEE---CSSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-HhCCccceEEEEEc-CCCccceEEEEE---ECCHHHHHHHHHH
Confidence 3558999999999987665 34543 34444 2443 355543 4688888888876
No 281
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=31.68 E-value=97 Score=19.41 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=24.1
Q ss_pred CHHHHHhHHhh-ccCCcEEEEEEeCCceEEEEe
Q psy2972 32 TVEEIKSEMEL-LHGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 32 t~~ev~~~ial-~~g~am~l~Vk~~g~~~~V~V 63 (143)
+.+++...++- ..|+.+.++|.++|+.+.+.+
T Consensus 53 ~~~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v 85 (87)
T 2i6v_A 53 DPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYI 85 (87)
T ss_dssp CHHHHHHHHHTGGGCSEEEEEEEETTEEEEEEE
T ss_pred CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence 56788777754 568899999966888777765
No 282
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=31.64 E-value=41 Score=20.58 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=36.7
Q ss_pred ccCCCCCC------CHHHHHhHHhhccCCcEEEEE-EeCCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 24 LSHLPQDV------TVEEIKSEMELLHGQSIMCCI-QADNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 24 L~dlp~~~------t~~ev~~~ial~~g~am~l~V-k~~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
...||..+ |-+++....+ .+|.-..+.+ +.+|++ +.++- -.+..+-.+|++.
T Consensus 6 V~nLp~~~~~~~~~t~~~l~~~F~-~~G~i~~v~i~~~~g~~~g~afV~---f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 6 VDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYPEEDGKTKGYIFLE---YASPAHAVDAVKN 66 (81)
T ss_dssp EESCCCCCTTTHHHHHHHHHHHHH-TTCCEEEEECCCBTTBCCCEEEEE---ESSHHHHHHHHTT
T ss_pred EeCCCCCcHHHHHHHHHHHHHHHh-hcCCeEEEEecCCCCcEeEEEEEE---ECCHHHHHHHHHH
Confidence 45799888 5677877764 6888778888 766654 54433 3578888888875
No 283
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=31.52 E-value=51 Score=24.18 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=21.7
Q ss_pred EEEEEeCCceEEEEecCCCCcHHHHHHH
Q psy2972 49 MCCIQADNKKFDIVISPKNTRVSDLKRT 76 (143)
Q Consensus 49 ~l~Vk~~g~~~~V~V~~~~aTV~dLK~a 76 (143)
.|+++.+|+.+.+.+ ++..|+.+.=+.
T Consensus 4 ~i~~~vNG~~~~v~~-~~~~tLL~~Lr~ 30 (161)
T 1rm6_C 4 ILRLTLNGRAREDLV-PDNMLLLDYLRE 30 (161)
T ss_dssp EEEEEETTEEEEEEE-ETTCBHHHHHHH
T ss_pred eEEEEECCEEEEEec-CCcCcHHHHHHH
Confidence 456688999999999 788899876543
No 284
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=31.07 E-value=87 Score=21.54 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=25.4
Q ss_pred CHHHHHhHHhhc-cCCcEEEEEEeCCceEEEEe
Q psy2972 32 TVEEIKSEMELL-HGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 32 t~~ev~~~ial~-~g~am~l~Vk~~g~~~~V~V 63 (143)
+.+++...++-. .|..++|+|.++|+.+++.|
T Consensus 90 ~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v 122 (134)
T 2l97_A 90 SSTDLQSALYNHSIGDTIKITYYRNGKEETTSI 122 (134)
T ss_dssp CHHHHHHHHHHSSTTCEEEEEEEETTEEEEEEE
T ss_pred CHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEE
Confidence 457787777654 68999999966898888887
No 285
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.90 E-value=1e+02 Score=19.45 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=37.9
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.-..+.| +. +|.+ +.++- -.+..+-.+|++.
T Consensus 19 ~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~---f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 19 IVLGLPWKTTEQDLKEYFS-TFGEVLMVQVKKDLKTGHSKGFGFVR---FTEYETQVKVMSQ 76 (103)
T ss_dssp EEESCCSSCCHHHHHHHHG-GGSCEEEEEEEECSSSCSEEEEEEEE---ESSHHHHHHHHHS
T ss_pred EEEcCCCcCCHHHHHHHHH-hcCCeEEEEEEecCCCCCccceEEEE---ECCHHHHHHHHHc
Confidence 3568999999999998885 5788777777 43 3554 44433 3678888888874
No 286
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=30.89 E-value=1.3e+02 Score=21.75 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=39.0
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-++|...++ .+|.-..+.| +. +|++ +.++ .-.+..+-.+|++..
T Consensus 19 fVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV---~F~~~~~A~~Ai~~~ 77 (213)
T 4f02_A 19 YVGDLHPDVTEAMLYEKFS-PAGPILSIRVCRDMITRRSLGYAYV---NFQQPADAERALDTM 77 (213)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEE---EESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hhCCEEEEEEecccCCCCccccccc---eeCCHHHHHHHHHHh
Confidence 4568999999999998875 6788777777 42 3554 4433 346888888898764
No 287
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.74 E-value=1e+02 Score=19.35 Aligned_cols=52 Identities=12% Similarity=0.212 Sum_probs=36.5
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+...||.++|-++|...++ .+|.- .+.+ +...+.+.++. -.+..+-.+|++.
T Consensus 23 ~V~nL~~~~t~~~l~~~F~-~~G~v-~~~~~~~~~~g~afV~---f~~~~~a~~A~~~ 75 (97)
T 2e5j_A 23 YVGNLPRDARVSDLKRALR-ELGSV-PLRLTWQGPRRRAFLH---YPDSAAAQQAVSC 75 (97)
T ss_dssp EEECCCTTCCHHHHHHHHH-HTTCC-CSEEEEETTTTEEEEE---CSSHHHHHHHHHH
T ss_pred EEeCCCCcCcHHHHHHHHH-hcCCE-EEEEEcCCCCcEEEEE---ECCHHHHHHHHHH
Confidence 3457999999999998876 66763 3455 54445566644 3578888888876
No 288
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=30.45 E-value=33 Score=29.84 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=44.6
Q ss_pred EEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeC------Ccccccccchhhhh--CCCCCCEEEE
Q psy2972 61 IVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFD------GIKLTNEKSLLSEL--GIESQCEITF 132 (143)
Q Consensus 61 V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~------gkkL~~d~~tL~dy--GI~~g~tl~f 132 (143)
+.| +.+++|.+|-..|.+.+.+.+..+ ...|+ -.+|.+.+.|+.+. +|.+||.|-|
T Consensus 151 ~~v-~~~~kv~~l~~~i~~~~g~p~dt~---------------l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~f 214 (530)
T 2ylm_A 151 IYT-PISCKIRDLLPVMCDRAGFIQDTS---------------LILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVF 214 (530)
T ss_dssp EEE-ETTCBGGGTHHHHHHHHTCCTTCC---------------EEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEE
T ss_pred EEE-CCCCCHHHHHHHHHHHcCCCCCCc---------------eEEEEecCCCceeEcccccccHHHHHhcccCCCEEEE
Confidence 567 778999999999999875544321 33333 23554357899999 9999999999
Q ss_pred Eeeec
Q psy2972 133 VKRLK 137 (143)
Q Consensus 133 v~rlr 137 (143)
-....
T Consensus 215 Q~~~~ 219 (530)
T 2ylm_A 215 QKDDP 219 (530)
T ss_dssp EECCG
T ss_pred EecCC
Confidence 88654
No 289
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=30.40 E-value=32 Score=23.73 Aligned_cols=41 Identities=15% Similarity=0.331 Sum_probs=32.5
Q ss_pred CCcHHHHHHHHHHHHHhhccCCcccCCCCCCCHHHHHhHHhhccCC
Q psy2972 1 MKDLDQLLTETKEAIKNIRTQNTLSHLPQDVTVEEIKSEMELLHGQ 46 (143)
Q Consensus 1 ~~~~~~~~~~~~~~l~~il~d~~L~dlp~~~t~~ev~~~ial~~g~ 46 (143)
|-+-+++|+.+++.|+++|- +-+..+|++++...-.-..|.
T Consensus 2 ~~~~~~~l~~vkk~irslLi-----S~K~gvtl~~L~~dYr~~~G~ 42 (102)
T 3s93_A 2 MSEQERIQECLRKEIRSLLI-----STKDGLSPQELEKEYLLMVGN 42 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----SSSSCBCHHHHHHHHHHHHSS
T ss_pred CccHHHHHHHHHHHHHHhhe-----eCCCCcCHHHHHHHHHHHcCC
Confidence 34568999999999999874 356789999988887766665
No 290
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=30.23 E-value=51 Score=22.71 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=38.1
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+..||.++|-++|...+ -.+|.-..+.| +. +|.+ +.++- -.+..+-.+|++.
T Consensus 75 v~nl~~~~~~~~l~~~F-~~~G~v~~~~i~~~~~~g~~~g~afV~---f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 75 VDNLTYRTSPDTLRRVF-EKYGRVGDVYIPRDRYTKESRGFAFVR---FHDKRDAEDAMDA 131 (158)
T ss_dssp EESCCTTCCHHHHHHHH-HHHSCEEEEECCCCSSCTTSCCEEEEE---ESBHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHH-HhcCCeEEEEEeecCCCCccceEEEEE---ECCHHHHHHHHHH
Confidence 45799999999999888 47888777777 43 3443 44432 3688888888876
No 291
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.19 E-value=1.1e+02 Score=19.68 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=37.5
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee-CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA-DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~-~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+...||.++|-+++...++ .+|.-..+.| +. +|.+ +.++- -.+..+-.+|++.
T Consensus 29 ~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~g~~~g~afV~---f~~~~~a~~A~~~ 85 (114)
T 1x5o_A 29 YISNLPLSMDEQELENMLK-PFGQVISTRILRDSSGTSRGVGFAR---MESTEKCEAVIGH 85 (114)
T ss_dssp EEESCCTTCCHHHHHHTTT-TTSCEEEEEEEECSSSCEEEEEEEE---ESCHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCcceEEEEE---ECCHHHHHHHHHH
Confidence 3558999999999988775 5787777777 43 3443 44432 3678888888886
No 292
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=29.84 E-value=1.3e+02 Score=20.20 Aligned_cols=55 Identities=11% Similarity=0.253 Sum_probs=38.3
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+..||..+|-+++...+. .+|.-..+.+ +. +|.+--+.. -.-.+..+-.+|++..
T Consensus 94 v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~af-V~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 94 VTNLPRTITDDQLDTIFG-KYGSIVQKNILRDKLTGRPRGVAF-VRYNKREEAQEAISAL 151 (168)
T ss_dssp EESCCTTCCHHHHHHHHT-SSSCEEEEEEEECTTTCCEEEEEE-EEESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHhhh-cCCcEEEEEEEEcCCCCCcceEEE-EEECCHHHHHHHHHHh
Confidence 457999999999999886 6887767777 43 344322221 1346889998988874
No 293
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.78 E-value=76 Score=19.96 Aligned_cols=52 Identities=8% Similarity=0.233 Sum_probs=37.6
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIE 78 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~ 78 (143)
+...||.++|-++|...++ .+|.-..+.+ +. +|.+ +.++- -.+..+-.+|++
T Consensus 14 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~---f~~~~~a~~A~~ 70 (99)
T 2dgs_A 14 FVGGIPHNCGETELREYFK-KFGVVTEVVMIYDAEKQRPRGFGFIT---FEDEQSVDQAVN 70 (99)
T ss_dssp EEESCCSSCCHHHHHHHHS-SSSCEEEEEECCCTTTCSCCSEEEEE---ESSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCCCceEEEE---ECCHHHHHHHHH
Confidence 3568999999999998876 5788778888 43 2332 55433 367888888886
No 294
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=29.72 E-value=74 Score=20.75 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=30.8
Q ss_pred CCccc--CCC-CCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEe
Q psy2972 21 QNTLS--HLP-QDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 21 d~~L~--dlp-~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V 63 (143)
|-+++ +.+ ...+.+++...+.-..|+.+.+.|..+|+.+.+.+
T Consensus 49 D~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~ 94 (112)
T 1qau_A 49 DIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHL 94 (112)
T ss_dssp CEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEECCTTSEEEE
T ss_pred CEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeCCcccceEe
Confidence 66655 332 33568999998887778999999966677766666
No 295
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=29.66 E-value=99 Score=25.65 Aligned_cols=33 Identities=6% Similarity=0.374 Sum_probs=24.0
Q ss_pred CCcEEEEE-EeCCce--EEEEecCCCCcHHHHHHHHHHHHh
Q psy2972 45 GQSIMCCI-QADNKK--FDIVISPKNTRVSDLKRTIERQIT 82 (143)
Q Consensus 45 g~am~l~V-k~~g~~--~~V~V~~~~aTV~dLK~aI~~~~~ 82 (143)
|.+|++++ +.++.. ++|+| +-.+++.++.+.+.
T Consensus 1 ~~~M~v~~e~~~~~~~~l~v~v-----~~~~~~~~~~~~~~ 36 (392)
T 1t11_A 1 GSHMQVTVETLEGLQRRLNITV-----PAANIEDAVAAELR 36 (392)
T ss_dssp --CCEEEEEECSTTEEEEEEEE-----CHHHHHHHHHHHHH
T ss_pred CCcceEEEEEcCCcEEEEEEEE-----cHHHHHHHHHHHHH
Confidence 66799999 888765 67777 45678888888775
No 296
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.55 E-value=42 Score=21.80 Aligned_cols=54 Identities=19% Similarity=0.138 Sum_probs=37.1
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcE--------EEEE-E--eCCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSI--------MCCI-Q--ADNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am--------~l~V-k--~~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|... .+.| + .+|.. +.++- -.+..+..+|++..
T Consensus 19 ~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~---f~~~~~A~~Ai~~l 85 (113)
T 2cpe_A 19 YVQGLNDSVTLDDLADFFK-QCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVS---YEDPPTAKAAVEWF 85 (113)
T ss_dssp EEECCCTTCCHHHHHHHHT-TTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEE---BSSHHHHHHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHHH-hcCCEeEccccCccCEEEEEeCCCCCeeeEEEEE---ECCHHHHHHHHHHc
Confidence 3568999999999998775 466543 3666 3 33543 55533 46889999998863
No 297
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=29.47 E-value=52 Score=21.61 Aligned_cols=53 Identities=13% Similarity=0.281 Sum_probs=38.4
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeC--Cce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QAD--NKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~--g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+...||.++|-+++...+. .+|.-..+.| +.. |.+ +.++. -.+..+..+|++.
T Consensus 29 fV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~tg~~kg~afV~---f~~~~~A~~Ai~~ 86 (109)
T 2rs2_A 29 FIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVT---FMDQAGVDKVLAQ 86 (109)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEECCCTTTCCCTTCEEEE---ESSHHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHHH-ccCCeEEEEEEECCCCCCcCcEEEEE---ECCHHHHHHHHHH
Confidence 3557999999999998886 6888888888 432 433 55433 3578888888875
No 298
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=29.38 E-value=91 Score=26.16 Aligned_cols=53 Identities=13% Similarity=0.227 Sum_probs=39.5
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-E--eCCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-Q--ADNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k--~~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
|+..||.++|-++|...++ .+|....|.| . .+|.+ |.++. -++..+..+||+.
T Consensus 106 fV~nL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~---F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 106 FVARVNYDTTESKLRREFE-VYGPIKRIHMVYSKRSGKPRGYAFIE---YEHERDMHSAYKH 163 (437)
T ss_pred EEeCCCCCCCHHHHHHHHH-HcCCeeEEEeeccCCCCCccceEEEe---eccHHHHHHHHHH
Confidence 4568999999999998886 4888777777 3 34544 55543 4688899999877
No 299
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=29.30 E-value=72 Score=24.13 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=38.7
Q ss_pred cccCCCCCCCHHHHHhHHhhccC--CcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHG--QSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g--~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
|+..||.++|-++|...++ .+| .-..|.| +. +|++ |-++. -.+..+.++||+.
T Consensus 72 fVgnL~~~~te~~L~~~F~-~~G~~~v~~v~i~~d~~tg~skGfaFV~---f~~~~~a~~Ai~~ 131 (229)
T 3q2s_C 72 YIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVG---VGSEASSKKLMDL 131 (229)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTTCCCEEEEEEEECTTTCCEEEEEEEE---ESCTTHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-HHCCcceEEEEEEecCCCCccceEEEEE---ECCHHHHHHHHHH
Confidence 5668999999999999885 788 7777777 43 4554 55543 3566777888875
No 300
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=29.21 E-value=63 Score=19.58 Aligned_cols=61 Identities=3% Similarity=0.022 Sum_probs=39.0
Q ss_pred EeCCceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCCcccccccchhhhhCCCCCCEEEE
Q psy2972 53 QADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITF 132 (143)
Q Consensus 53 k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~gkkL~~d~~tL~dyGI~~g~tl~f 132 (143)
+.+|+.+++ +.+||.+|.+.+.. .+ +......+|+... ...-.+.-+++||+|-|
T Consensus 3 ~vNg~~~~~----~~~tv~~ll~~l~~------~~-------------~~v~vavN~~~v~--~~~~~~~~L~dgD~v~i 57 (64)
T 2cu3_A 3 WLNGEPRPL----EGKTLKEVLEEMGV------EL-------------KGVAVLLNEEAFL--GLEVPDRPLRDGDVVEV 57 (64)
T ss_dssp EETTEEECC----TTCCHHHHHHHHTB------CG-------------GGEEEEETTEEEE--GGGCCCCCCCTTCEEEE
T ss_pred EECCEEEEc----CCCcHHHHHHHcCC------CC-------------CcEEEEECCEECC--ccccCCcCCCCCCEEEE
Confidence 456776654 34799999887732 11 1335556777663 33344567999999999
Q ss_pred Eeeecc
Q psy2972 133 VKRLKD 138 (143)
Q Consensus 133 v~rlr~ 138 (143)
+.-.-|
T Consensus 58 ~~~V~G 63 (64)
T 2cu3_A 58 VALMQG 63 (64)
T ss_dssp EECCCC
T ss_pred Eeeccc
Confidence 876543
No 301
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.95 E-value=1.1e+02 Score=20.30 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=37.9
Q ss_pred ccCCCC-CCCHHHHHhHHhhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 24 LSHLPQ-DVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 24 L~dlp~-~~t~~ev~~~ial~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
...||. ++|-+||..+.+ .+|.-..+.| +..| +.++- -++..+-.+||+..
T Consensus 20 V~nLp~~~~te~dL~~lF~-~fG~V~~v~i~~~kg--~aFVe---f~~~~~A~~Ai~~l 72 (102)
T 1x4d_A 20 IMDFQRGKNLRYQLLQLVE-PFGVISNHLILNKIN--EAFIE---MATTEDAQAAVDYY 72 (102)
T ss_dssp EESCCCSSSHHHHHHTTTG-GGSCEEEEEECSSSS--CEEEE---ESSHHHHHHHHHHH
T ss_pred EeCCCCCcCCHHHHHHHHH-hcCCEEEEEEEcCCC--EEEEE---ECCHHHHHHHHHHH
Confidence 468999 999999987664 8999888888 5433 44432 36788888888863
No 302
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=28.84 E-value=76 Score=20.73 Aligned_cols=32 Identities=9% Similarity=0.225 Sum_probs=23.4
Q ss_pred CHHHHHhHHh-hccCCcEEEEEEeCCceEEEEe
Q psy2972 32 TVEEIKSEME-LLHGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 32 t~~ev~~~ia-l~~g~am~l~Vk~~g~~~~V~V 63 (143)
+.+++...++ +..|..+.|+|.++|+.+.+.+
T Consensus 71 ~~~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v 103 (105)
T 2i4s_A 71 DPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYI 103 (105)
T ss_dssp STTHHHHHHHHHTTCSEEEEEEEETTEEEEEEE
T ss_pred CHHHHHHHHHhcCCCCeEEEEEEECCEEEEEEE
Confidence 4567776665 3568899999966888877765
No 303
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=28.82 E-value=77 Score=21.16 Aligned_cols=26 Identities=12% Similarity=0.316 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHHh
Q psy2972 56 NKKFDIVISPKNTRVSDLKRTIERQIT 82 (143)
Q Consensus 56 g~~~~V~V~~~~aTV~dLK~aI~~~~~ 82 (143)
+..+.+.| +..||=.|+|+||+.-|.
T Consensus 22 ~n~~~F~V-~~~AnK~qIK~ave~lf~ 47 (85)
T 1vq8_S 22 QNKLQFAV-DDRASKGEVADAVEEQYD 47 (85)
T ss_dssp SCEEEEEE-CTTCCHHHHHHHHHHHHC
T ss_pred CCEEEEEE-CCCCCHHHHHHHHHHHhC
Confidence 35688999 899999999999999985
No 304
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=28.61 E-value=94 Score=21.93 Aligned_cols=54 Identities=13% Similarity=0.303 Sum_probs=37.8
Q ss_pred CHHHHHhH---HhhccCCcEEEEE-EeCCceE------EEEecCCCCcHHHHHHHHHHHHhHhHh
Q psy2972 32 TVEEIKSE---MELLHGQSIMCCI-QADNKKF------DIVISPKNTRVSDLKRTIERQITMQMK 86 (143)
Q Consensus 32 t~~ev~~~---ial~~g~am~l~V-k~~g~~~------~V~V~~~~aTV~dLK~aI~~~~~~~~~ 86 (143)
|+++...+ |.-.+..-+=|.| +..++.+ .+-| +.+.||.++...|.+...+.++
T Consensus 13 ~~e~R~~e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflV-p~~~tv~qf~~~iRkrl~l~~~ 76 (119)
T 3h9d_A 13 TFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLV-PSDLTVGQFVSVLRKRVQLEAE 76 (119)
T ss_dssp CHHHHHHHHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEE-ETTCBHHHHHHHHHHHHTCCTT
T ss_pred CHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEc-CCCCCHHHHHHHHHHHhCCCcc
Confidence 45554433 3456777788888 8776543 3457 8889999999999998765543
No 305
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=28.59 E-value=61 Score=22.08 Aligned_cols=23 Identities=9% Similarity=0.346 Sum_probs=21.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHh
Q psy2972 59 FDIVISPKNTRVSDLKRTIERQIT 82 (143)
Q Consensus 59 ~~V~V~~~~aTV~dLK~aI~~~~~ 82 (143)
+.+.| +..||=.|+|+||+..|.
T Consensus 25 y~F~V-~~~anK~eIK~aVE~lf~ 47 (95)
T 2zjr_Q 25 YSFWV-SPKATKTEIKDAIQQAFG 47 (95)
T ss_dssp CEEEE-CSSCTHHHHHHHHHHHHC
T ss_pred EEEEE-cCCCCHHHHHHHHHHHhC
Confidence 88889 899999999999999985
No 306
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.53 E-value=1.1e+02 Score=19.10 Aligned_cols=52 Identities=8% Similarity=0.126 Sum_probs=37.9
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-++|...++ .+|.-..+.+ +. +.+.++- -.+..+-.+|++.-
T Consensus 21 ~V~nlp~~~t~~~l~~~F~-~~G~v~~v~~~~~--~g~afV~---f~~~~~A~~A~~~l 73 (97)
T 1why_A 21 WVGGLGPNTSLAALAREFD-RFGSIRTIDHVKG--DSFAYIQ---YESLDAAQAACAKM 73 (97)
T ss_dssp EEECCCSSCCHHHHHHHHH-TTSCEEEEEECSS--SCCEEEE---ESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeeEEEEeCC--CCEEEEE---ECCHHHHHHHHHHH
Confidence 3458999999999998775 7888777777 43 3355433 36788888888863
No 307
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=28.35 E-value=60 Score=20.22 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=17.5
Q ss_pred CCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEe
Q psy2972 30 DVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 30 ~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V 63 (143)
+.+.+++...++-. +..+.++|..+|+.+.+.+
T Consensus 58 ~~~~~~~~~~l~~~-~~~v~l~v~r~g~~~~~~v 90 (92)
T 3cyy_A 58 NMSLTDAKTLIERS-KGKLKMVVQRDERATLLNV 90 (92)
T ss_dssp TCCHHHHHHHHHTT-TTEEEEEEEC---------
T ss_pred CCCHHHHHHHHHcC-CCcEEEEEEeCCceeeeeC
Confidence 45788988877653 4588888866777777766
No 308
>3d7j_A Uncharacterized protein SCO6650; T-fold, unknown function; 1.45A {Streptomyces coelicolor}
Probab=28.32 E-value=57 Score=23.74 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHHhhccCCcccCCCC----CCCHHHHHhHH
Q psy2972 3 DLDQLLTETKEAIKNIRTQNTLSHLPQ----DVTVEEIKSEM 40 (143)
Q Consensus 3 ~~~~~~~~~~~~l~~il~d~~L~dlp~----~~t~~ev~~~i 40 (143)
|..++-+++++ +-.-++-.+|+++|. ++|.|.+--.|
T Consensus 71 DF~~lK~~ik~-i~~~lDH~~Ln~~p~f~~~npTaEnlA~~i 111 (152)
T 3d7j_A 71 DIGLATQELGA-VVGALNYRNLDNEPDFAGVNTSTEFLAKVI 111 (152)
T ss_dssp CHHHHHHHHHH-HHHTTTTEEGGGCGGGTTSCCCHHHHHHHH
T ss_pred EHHHHHHHHHH-HHHhcCCcccccccccCCCCCCHHHHHHHH
Confidence 56677777777 445678889999883 78887765555
No 309
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=28.28 E-value=1.1e+02 Score=19.66 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=25.1
Q ss_pred CHHHHHhHHhh-ccCCcEEEEEEeCCceEEEEe
Q psy2972 32 TVEEIKSEMEL-LHGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 32 t~~ev~~~ial-~~g~am~l~Vk~~g~~~~V~V 63 (143)
+.+++...++- ..|+.+.|+|.++|+...+.+
T Consensus 40 ~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v 72 (100)
T 3i18_A 40 SSQEFIDYIHSKKVGDTVKINYKHGDKNEQADI 72 (100)
T ss_dssp SHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEE
T ss_pred CHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEE
Confidence 56788888875 468899999966888877777
No 310
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=27.94 E-value=1e+02 Score=21.44 Aligned_cols=52 Identities=10% Similarity=0.203 Sum_probs=36.1
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+..||..+|-++|...++ .+|.-..+.+ +. +|.+ +.++ .-.+..+-.+|++.
T Consensus 119 v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~~~~~~~~~~g~afV---~f~~~~~a~~A~~~ 175 (198)
T 2yh0_A 119 IGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSATGLSKGYAFC---EYVDINVTDQAIAG 175 (198)
T ss_dssp EECCCTTCCHHHHHHHHH-TBSCEEEEEEEECTTTCSEEEEEEE---EESSSSHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-HcCCccEEEEeecCCCCCcceEEEE---EECCHHHHHHHHHH
Confidence 457999999999998887 5888777777 54 4543 3332 23566677777775
No 311
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=27.86 E-value=50 Score=23.97 Aligned_cols=53 Identities=15% Similarity=0.148 Sum_probs=38.0
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee-CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA-DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~-~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.-..+.| .. +|.+ +.++. -.+..+-.+|++.
T Consensus 92 ~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~g~~kG~afV~---F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 92 LVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDRSGRSLGTADVH---FERRADALKAMKQ 148 (177)
T ss_dssp EEECCCSCCCHHHHHHHHH-HTSCCSEEEECCCTTSSCSCCEEEE---ESCHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCEeeEEEEE---eCCHHHHHHHHHH
Confidence 3557999999999998887 5888777777 32 3432 44433 3678888888886
No 312
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=27.86 E-value=1.2e+02 Score=22.10 Aligned_cols=52 Identities=21% Similarity=0.320 Sum_probs=37.6
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee-CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA-DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~-~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
...||.++|.++|....+ .+|.-..|.+ +. +|.+ +.++- -.|..+..+|++.
T Consensus 114 V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~~~~~~kG~aFVe---F~~~e~A~~A~~~ 169 (193)
T 2voo_A 114 IKGFPTDATLDDIKEWLE-DKGQVLNIQMRRTLHKAFKGSIFVV---FDSIESAKKFVET 169 (193)
T ss_dssp EECCCTTCCHHHHHHHHT-TSCCEEEEEEEECTTCCEEEEEEEE---ESSHHHHHHHHHC
T ss_pred ecCCCCcCCHHHHHHHHh-cCCCEEEEEEEECCCCCcccEEEEE---ECCHHHHHHHHHh
Confidence 458999999999998887 7898778888 42 2433 44432 3678888888854
No 313
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=27.80 E-value=1.4e+02 Score=20.06 Aligned_cols=54 Identities=7% Similarity=0.070 Sum_probs=38.4
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeC-C---ce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QAD-N---KK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~-g---~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-++|...+. .+|.-..+.+ +.. + .+ +.++ .-.+..+-.+|++..
T Consensus 7 ~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~~g~afV---~f~~~~~A~~A~~~l 67 (175)
T 3nmr_A 7 FVGQVPRTWSEKDLRELFE-QYGAVYEINVLRDRSQNPPQSKGCCFV---TFYTRKAALEAQNAL 67 (175)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEECSSSSCEEEEEEEE---EESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCCCcceEEEE---EECCHHHHHHHHHHh
Confidence 3568999999999998876 6788777777 433 2 23 4433 346888888888764
No 314
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=27.66 E-value=42 Score=23.91 Aligned_cols=29 Identities=7% Similarity=0.213 Sum_probs=23.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhHhHhhc
Q psy2972 59 FDIVISPKNTRVSDLKRTIERQITMQMKRK 88 (143)
Q Consensus 59 ~~V~V~~~~aTV~dLK~aI~~~~~~~~~re 88 (143)
.++-| ..++|+.+|+..|.+.+...+.+.
T Consensus 58 ~~~rv-~k~~~~~~~~~~va~~lg~~~~~~ 86 (130)
T 2kvr_A 58 TVFKV-LKNSSLAEFVQSLSQTMGFPQDQI 86 (130)
T ss_dssp EEEEC-CTTSBHHHHHHHHHHHHCCCGGGC
T ss_pred ceEEE-eccCcHHHHHHHHHHHhCCCcccE
Confidence 35678 788999999999999987655543
No 315
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=27.50 E-value=1.1e+02 Score=18.62 Aligned_cols=53 Identities=13% Similarity=0.386 Sum_probs=36.3
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+...||.++|-++|...++ .+|.-..+.+ +. +|.+ +.++- -.+..+..+|++.
T Consensus 15 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~---f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 15 FVGGLSWDTSKKDLKDYFT-KFGEVVDCTIKMDPNTGRSRGFGFIL---FKDAASVEKVLDQ 72 (87)
T ss_dssp EEECCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEE---ESSTHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccccEEEEE---ECCHHHHHHHHHh
Confidence 3558999999999998874 6788777777 43 3544 44432 3567777777743
No 316
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.43 E-value=96 Score=19.24 Aligned_cols=54 Identities=9% Similarity=0.221 Sum_probs=36.9
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEE-EE-EeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMC-CI-QADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l-~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-++|...++ .+|.-..+ .+ +.......+ | .-.+..+-.+|+...
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~i~~~~~~~~af-V--~f~~~~~a~~Ai~~l 74 (96)
T 2e44_A 19 QIRNIPPHLQWEVLDSLLV-QYGVVESCEQVNTDSETAVVN-V--TYSSKDQARQALDKL 74 (96)
T ss_dssp EEEEECSSSCHHHHHHHHH-HHSCEEEEEEECCSSSSEEEE-E--EESSHHHHHHHHHHH
T ss_pred EEEcCCCCCCHHHHHHHHH-hcCCeEEEEEeecCCCCCEEE-E--EECCHHHHHHHHHHh
Confidence 3457999999999998887 78887777 46 432222222 2 236788888888863
No 317
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.40 E-value=1.2e+02 Score=19.17 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=35.5
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeC---Cce--EEEEecCCCCcHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QAD---NKK--FDIVISPKNTRVSDLKRTI 77 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~---g~~--~~V~V~~~~aTV~dLK~aI 77 (143)
++..||.++|-++|...++ .+| ...+.| +.. |.+ +.++- -.+..+..+|+
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~---f~~~~~a~~A~ 74 (104)
T 1wi8_A 19 FLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAE---FEDLDSLLSAL 74 (104)
T ss_dssp EEESCCSSCCHHHHHHHTT-TSC-EEEEECCBCSSCTTSBCSCEEEE---ESSHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHH-HCC-ceEEEEecCCCCCCCcCeEEEEE---ECCHHHHHHHH
Confidence 3568999999999998887 567 777777 432 332 44432 36888888888
No 318
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=27.37 E-value=69 Score=20.58 Aligned_cols=54 Identities=9% Similarity=0.066 Sum_probs=38.0
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.+ +.++- -.+..+-.+|+...
T Consensus 30 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~---f~~~~~A~~Ai~~l 88 (110)
T 1oo0_B 30 FVTSIHEEAQEDEIQEKFC-DYGEIKNIHLNLDRRTGFSKGYALVE---YETHKQALAAKEAL 88 (110)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEECCBCTTTSSBCSEEEEE---ESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcceEEEEE---ECCHHHHHHHHHHc
Confidence 3558999999999998775 6788777777 43 2332 44432 36888888888863
No 319
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=27.28 E-value=35 Score=21.39 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=17.7
Q ss_pred cchhhhhCCCCCCEEEEEee
Q psy2972 116 KSLLSELGIESQCEITFVKR 135 (143)
Q Consensus 116 ~~tL~dyGI~~g~tl~fv~r 135 (143)
...|.+.|+..|++|.++.+
T Consensus 28 ~~rL~~lGi~~G~~v~v~~~ 47 (77)
T 3e19_A 28 RQKLVSMGLTPGATIQVLES 47 (77)
T ss_dssp HHHHHTTTCSTTCEEEEEEC
T ss_pred HHHHHHCCCCCCCEEEEEEe
Confidence 47899999999999999865
No 320
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=27.04 E-value=80 Score=20.85 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=37.8
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee-CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA-DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~-~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.. +.++- -.+..+-.+|++..
T Consensus 39 ~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~g~~~g~afV~---f~~~~~A~~Ai~~l 96 (124)
T 2kt5_A 39 LVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDRSGRSLGTADVH---FERRADALKAMKQY 96 (124)
T ss_dssp EEESCCSSCCHHHHHHHHH-TTSCCSEEEEECCSSSSCCSEEEEE---ESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCEeeEEEEE---ECCHHHHHHHHHHc
Confidence 3568999999999998876 4787667777 32 3433 44432 36888989998863
No 321
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=26.86 E-value=37 Score=20.94 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=17.7
Q ss_pred cchhhhhCCCCCCEEEEEee
Q psy2972 116 KSLLSELGIESQCEITFVKR 135 (143)
Q Consensus 116 ~~tL~dyGI~~g~tl~fv~r 135 (143)
...|.+.||..|++|.++.+
T Consensus 24 ~~rL~~lGl~~G~~v~v~~~ 43 (75)
T 2h3j_A 24 RQRLFSMGLLPGAALRVVRI 43 (75)
T ss_dssp HHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHcCCCCCCEEEEEEE
Confidence 36899999999999999876
No 322
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=26.73 E-value=28 Score=22.18 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhccCCcccCCCCCCCHHHHHhHHh
Q psy2972 4 LDQLLTETKEAIKNIRTQNTLSHLPQDVTVEEIKSEME 41 (143)
Q Consensus 4 ~~~~~~~~~~~l~~il~d~~L~dlp~~~t~~ev~~~ia 41 (143)
+++=++.++..|..+..+.-|+.+-...+++++...|.
T Consensus 50 L~~r~~~le~~l~~l~~~~~l~~~~~~~s~~~i~~~l~ 87 (89)
T 3coq_A 50 VESRLERLEQLFLLIFPREDLDMILKMDSLQDIKALLT 87 (89)
T ss_dssp HHHHHHHHHHHHHHHCSSSCHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCchhhHHhhcCCCHHHHHHHHh
Confidence 45556777888888888888887777888898887764
No 323
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=26.60 E-value=40 Score=21.88 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=25.5
Q ss_pred CHHHHHhHHhhc-cCCcEEEEEEeCCceEEEEe
Q psy2972 32 TVEEIKSEMELL-HGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 32 t~~ev~~~ial~-~g~am~l~Vk~~g~~~~V~V 63 (143)
+.+++...|+-. .|+.++|+|.++|+.+++.|
T Consensus 34 ~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v 66 (91)
T 2kjp_A 34 SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTL 66 (91)
T ss_dssp SHHHHHHHHSSCCSSCEECEEEESSSCEECCCE
T ss_pred CHHHHHHHHHcCCCCCEEEEEEEECCEEEEEEE
Confidence 567888888765 68999999966888877776
No 324
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.52 E-value=77 Score=20.62 Aligned_cols=53 Identities=15% Similarity=0.342 Sum_probs=37.5
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+...||.++|-++|...++ .+|.-..+.+ +. +|.+ +.++. -.+..+..+|++.
T Consensus 31 ~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~---f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 31 FIGGLSFETTEESLRNYYE-QWGKLTDCVVMRDPASKRSRGFGFVT---FSSMAEVDAAMAA 88 (116)
T ss_dssp EEECCTTCCCHHHHHHHHT-SSCCCSEEEEECCTTTSSCCSEEEEE---CSSHHHHHHHHTS
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCCcCceEEEE---eCCHHHHHHHHHh
Confidence 4568999999999998874 6888777777 42 2433 55543 3577777777755
No 325
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=26.19 E-value=1.6e+02 Score=22.03 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=39.4
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee-CCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA-DNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~-~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+..||..+|-++|...++ .+|.-..+.| +. +|.+ +.++ .-++..+-.+|+..-
T Consensus 101 v~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV---~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 101 VKNLSPVVSNELLEQAFS-QFGPVEKAVVVVDDRGRATGKGFV---EFAAKPPARKALERC 157 (261)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEEETTSCEEEEEEE---EESSHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHH-hcCCeEEEEeeeCCCCCcCcEEEE---EeCCHHHHHHHHHHh
Confidence 447999999999998885 6898778888 44 3544 3332 347889999999874
No 326
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=25.64 E-value=97 Score=20.72 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=32.0
Q ss_pred CCccc--CCC-CCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEe
Q psy2972 21 QNTLS--HLP-QDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 21 d~~L~--dlp-~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V 63 (143)
|-+++ +.+ ...+.+|+...+.-..|+.+.|.|..+|+.+.+.+
T Consensus 56 D~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~ 101 (127)
T 1b8q_A 56 DIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHL 101 (127)
T ss_dssp TCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECCCCSEEECC
T ss_pred CEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEeCCceEEEEE
Confidence 66655 333 34568999998877778999999976788887777
No 327
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=25.58 E-value=1.1e+02 Score=19.91 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=22.0
Q ss_pred CCcEEEEEE-eCCceEEEEecCCCCcHHHH
Q psy2972 45 GQSIMCCIQ-ADNKKFDIVISPKNTRVSDL 73 (143)
Q Consensus 45 g~am~l~Vk-~~g~~~~V~V~~~~aTV~dL 73 (143)
|...+|++. .+|....|.+ ++..|+.|.
T Consensus 1 ~~~~~v~~~~~~g~~~~~~~-~~g~tlL~a 29 (103)
T 2wlb_A 1 GTGIKVFFVTPEGREIMIEG-NEGDSILDL 29 (103)
T ss_dssp CCCEEEEEECTTCCEEEEEE-CTTCBHHHH
T ss_pred CCceEEEEEeCCCCEEEEEE-CCCCHHHHH
Confidence 456788885 8898888899 788898774
No 328
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=25.42 E-value=80 Score=21.41 Aligned_cols=25 Identities=8% Similarity=0.324 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHHh
Q psy2972 57 KKFDIVISPKNTRVSDLKRTIERQIT 82 (143)
Q Consensus 57 ~~~~V~V~~~~aTV~dLK~aI~~~~~ 82 (143)
..+.+.| +..||=-|+|+||+.-|.
T Consensus 28 n~~~F~V-~~~AnK~eIK~AVE~lf~ 52 (93)
T 3r8s_T 28 NTIVLKV-AKDATKAEIKAAVQKLFE 52 (93)
T ss_dssp SEEEEEE-CSSCCHHHHHHHHHHHSC
T ss_pred CEEEEEE-CCCCCHHHHHHHHHHHcC
Confidence 5688899 899999999999999985
No 329
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=25.30 E-value=1.4e+02 Score=22.36 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=38.4
Q ss_pred cccCCCCCCCHHHHHh---HHhhccCCcEEEEE-EeCCce--EEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKS---EMELLHGQSIMCCI-QADNKK--FDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~---~ial~~g~am~l~V-k~~g~~--~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-++|+. .+--.+|.-..|.+ + +|+. +.++- -.+..+-.+|++..
T Consensus 13 ~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~---f~~~~~a~~A~~~l 72 (282)
T 3pgw_A 13 YINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVI---FKEVSSATNALRSM 72 (282)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEE---ECCHHHHHHHHHHh
Confidence 3568999999999874 23347788888888 5 5543 55533 46888888888764
No 330
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=24.81 E-value=1.7e+02 Score=19.90 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=38.2
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
...||.++|-+++...++ .+|.-..+.+..+.+-+.++- -.+..+-.+|++..
T Consensus 78 V~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~afV~---f~~~~~a~~A~~~l 130 (150)
T 2i2y_A 78 VGNLGNNGNKTELERAFG-YYGPLRSVWVARNPPGFAFVE---FEDPRDAADAVREL 130 (150)
T ss_dssp EESCCSCCSCHHHHHHHH-HHSCEEEEEECSSSCSEEEEE---ESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hhCCEEEEEEeeCCCcEEEEE---ECCHHHHHHHHHHc
Confidence 457999999999998886 578877788822334455433 35788888888763
No 331
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=24.78 E-value=47 Score=21.17 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=17.6
Q ss_pred cchhhhhCCCCCCEEEEEee
Q psy2972 116 KSLLSELGIESQCEITFVKR 135 (143)
Q Consensus 116 ~~tL~dyGI~~g~tl~fv~r 135 (143)
...|.+.||..|++|.++.+
T Consensus 25 ~~rL~~lGl~pG~~v~V~~~ 44 (81)
T 2k5l_A 25 KRRIMDMGITRGCEIYIRKV 44 (81)
T ss_dssp HHHHHHHTCCTTCEEEEEEE
T ss_pred HHHHHHCCCCCCCEEEEEEe
Confidence 36899999999999999876
No 332
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=24.66 E-value=87 Score=19.73 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=29.6
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCCceEEEEe
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVI 63 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g~~~~V~V 63 (143)
+...||.++|-+++....+ .+|.-..+.| + +.+-|.++-
T Consensus 15 ~V~~Lp~~~te~~L~~~F~-~~G~i~~v~i~~-~srGfaFV~ 54 (89)
T 3d2w_A 15 FVGRCTEDMTAEELQQFFC-QYGEVVDVFIPK-PFRAFAFVT 54 (89)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEECCS-SCCSEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHh-ccCCEEEEEEee-CCCCEEEEE
Confidence 4568999999999999887 6898888888 5 344465543
No 333
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.16 E-value=96 Score=20.75 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHHh
Q psy2972 56 NKKFDIVISPKNTRVSDLKRTIERQIT 82 (143)
Q Consensus 56 g~~~~V~V~~~~aTV~dLK~aI~~~~~ 82 (143)
...+.+.| ...||=.|+|+||+.-|.
T Consensus 23 ~n~~~F~V-d~~AnK~qIK~AVe~lf~ 48 (86)
T 3j21_T 23 ENKLTFIV-DRRATKQDIKRAVEEIFN 48 (86)
T ss_dssp SCEEEEEE-CTTCCHHHHHHHHHHHTT
T ss_pred CCEEEEEE-cCCCCHHHHHHHHHHHcC
Confidence 35688899 899999999999999885
No 334
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=23.88 E-value=1.9e+02 Score=20.28 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=38.4
Q ss_pred cCCCCCCCHHHHHhHHhhccCCcEEEEE-EeCCceE-EEEecCCCCcHHHHHHHHHHH
Q psy2972 25 SHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKKF-DIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 25 ~dlp~~~t~~ev~~~ial~~g~am~l~V-k~~g~~~-~V~V~~~~aTV~dLK~aI~~~ 80 (143)
..||..+|.+++....+ .+|.-.+|.+ +.. +.| .++. -.++.+=++|++.-
T Consensus 34 ~NL~~~vte~~L~~lFs-~yG~V~~V~i~~~~-~gfqAFVe---f~~~~~A~~Ai~~L 86 (130)
T 3zzy_A 34 ENLFYPVTLDVLHQIFS-KFGTVLKIITFTKN-NQFQALLQ---YADPVSAQHAKLSL 86 (130)
T ss_dssp ESCCSCCCHHHHHHHHT-TSSCEEEEEEEEET-TEEEEEEE---ESCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHh-CcCCEEEEEEEcCC-CCcEEEEE---ECCHHHHHHHHHHc
Confidence 47999999999886654 8999888888 654 344 5443 35788999999874
No 335
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=23.80 E-value=49 Score=19.61 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=35.4
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
+...||.++|-+++...+. .+|.-..+.+ +. +|.+ +.++- -.+..+..+|++.
T Consensus 3 ~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~---f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 3 FVGGLSPDTPEEKIREYFG-GFGEVESIELPMDNKTNKRRGFCFIT---FKEEEPVKKIMEK 60 (75)
T ss_dssp EESCCCSSCCHHHHHHHHH-HHSCCSEECCCCSCCCSSSCCCEEEE---CSSSHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCCEEEEE---ECCHHHHHHHHHh
Confidence 4578999999999988876 4787666666 32 2332 55433 3466777777763
No 336
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=23.72 E-value=45 Score=19.70 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=11.6
Q ss_pred CCcHHHHHHHHHHH
Q psy2972 67 NTRVSDLKRTIERQ 80 (143)
Q Consensus 67 ~aTV~dLK~aI~~~ 80 (143)
+.||.+||..|++-
T Consensus 2 sntvkelknyiqel 15 (46)
T 3he4_B 2 SNTVKELKNYIQEL 15 (46)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 45999999999985
No 337
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.57 E-value=86 Score=19.34 Aligned_cols=51 Identities=25% Similarity=0.401 Sum_probs=36.0
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-++|...++ .+|.-..+.+. .| +.++- -.+..+-.+|++..
T Consensus 12 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~-~g--~afV~---f~~~~~A~~A~~~l 62 (90)
T 2dnq_A 12 FIGNLPREATEQEIRSLFE-QYGKVLECDII-KN--YGFVH---IEDKTAAEDAIRNL 62 (90)
T ss_dssp EEESCCSSCCHHHHHHHHH-TSSCEEEEEEE-TT--EEEEE---ESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEE-CC--EEEEE---ECCHHHHHHHHHHh
Confidence 3568999999999998876 67876666663 12 33322 25788888888763
No 338
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=23.47 E-value=1.2e+02 Score=19.73 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=23.9
Q ss_pred CHHHHHhHHhhccCCcEEEEEEeCCceEEEEe
Q psy2972 32 TVEEIKSEMELLHGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 32 t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V 63 (143)
+.+++...+ ..|+.+.|+|.++|+.+.+.+
T Consensus 69 ~~~~~~~~l--~~g~~v~l~v~R~g~~~~~~v 98 (112)
T 2p3w_A 69 DSSELQEAV--LTESPLLLEVRRGNDDLLFSI 98 (112)
T ss_dssp SHHHHHHHH--HHCSSEEEEEEETTEEEEEEE
T ss_pred CHHHHHHHH--hCCCeEEEEEEECCEEEEEEE
Confidence 567777776 468899999966888888888
No 339
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=23.39 E-value=1.2e+02 Score=24.41 Aligned_cols=35 Identities=6% Similarity=0.209 Sum_probs=29.1
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHH
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQI 81 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~ 81 (143)
+.+.|.| ..||++..|.| ++..|+.||=+.+..+-
T Consensus 30 ~k~ivkv~~~D~ss~~l~V-~~~~TA~dv~~~L~~k~ 65 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMV-DERQTVRQVLDNLMDKS 65 (281)
T ss_dssp CEEEEEEEETTSCEEEEEE-ETTCBHHHHHHHHHHHS
T ss_pred ccEEEEEEecCCCEEEEEE-CCCCcHHHHHHHHHHhc
Confidence 3567888 88999999999 88899999987776654
No 340
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=23.11 E-value=50 Score=26.27 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=23.7
Q ss_pred cEEEEE-EeCCceEEEEecCC--CCcHHHHH
Q psy2972 47 SIMCCI-QADNKKFDIVISPK--NTRVSDLK 74 (143)
Q Consensus 47 am~l~V-k~~g~~~~V~V~~~--~aTV~dLK 74 (143)
-++|.| -+||+...+.| .. ++|+.||-
T Consensus 5 ~~~i~V~l~dg~~~~~~i-~~~~~tt~~el~ 34 (322)
T 4dxa_B 5 FEKVRIYRMDGSYRSVEL-KHGNNTTVQQIM 34 (322)
T ss_dssp CCEEEEECTTSCEEEEEC-TTGGGCCHHHHH
T ss_pred ceEEEEEEECCcEEEEEE-cCCCCCcHHHHH
Confidence 478899 89999999999 77 79999993
No 341
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.08 E-value=1.5e+02 Score=18.69 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=35.3
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTI 77 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI 77 (143)
++..||.++|-++|...++-- | ...+.+ +. +|.. +.++- -.+..+..+|+
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~~~~~~g~~~g~afV~---f~~~~~a~~A~ 73 (103)
T 2dng_A 19 YVGNLPFNTVQGDIDAIFKDL-S-IRSVRLVRDKDTDKFKGFCYVE---FDEVDSLKEAL 73 (103)
T ss_dssp EEESCCTTCCHHHHHHHTTTS-C-EEEEEEEECSSSCSEEEEEEEE---ESSHHHHHHHG
T ss_pred EEeCCCCCCCHHHHHHHHHhC-C-ceEEEEeecCCCCccceEEEEE---ECCHHHHHHHH
Confidence 356899999999999988755 6 666777 43 2443 44432 36788888888
No 342
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=22.95 E-value=1.2e+02 Score=20.49 Aligned_cols=37 Identities=14% Similarity=0.085 Sum_probs=23.8
Q ss_pred CCcEEEEEEeC--CceEEEEecCCCCcHHHHHHHHHHHH
Q psy2972 45 GQSIMCCIQAD--NKKFDIVISPKNTRVSDLKRTIERQI 81 (143)
Q Consensus 45 g~am~l~Vk~~--g~~~~V~V~~~~aTV~dLK~aI~~~~ 81 (143)
|....|+-|.- ...-.|.+.-...+|.|||++|..+-
T Consensus 4 ~~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~ 42 (86)
T 2c7h_A 4 GSMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGRE 42 (86)
T ss_dssp TTBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHH
T ss_pred cceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHh
Confidence 33334444332 34466777445689999999999863
No 343
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=22.76 E-value=1.2e+02 Score=21.65 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=37.4
Q ss_pred CHHHHHhH---HhhccCCcEEEEE-EeCCceE------EEEecCCCCcHHHHHHHHHHHHhHhHh
Q psy2972 32 TVEEIKSE---MELLHGQSIMCCI-QADNKKF------DIVISPKNTRVSDLKRTIERQITMQMK 86 (143)
Q Consensus 32 t~~ev~~~---ial~~g~am~l~V-k~~g~~~------~V~V~~~~aTV~dLK~aI~~~~~~~~~ 86 (143)
|+++...+ |.-.+..-+=|.| +.+++.+ .+-| +.+.||.++...|.+...+.++
T Consensus 18 s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflV-p~~~tv~qf~~~IRkrl~L~~~ 81 (125)
T 3m95_A 18 SFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLV-PSDLTVGQFYFLIRKRIHLRPE 81 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEE-ETTSBHHHHHHHHHHHTTCCTT
T ss_pred CHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEc-CCCCEeeeehhhhHhhcCCCcc
Confidence 45444333 3446777788888 8776543 3457 8889999999999998755443
No 344
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=22.65 E-value=55 Score=21.16 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=17.5
Q ss_pred cchhhhhCCCCCCEEEEEee
Q psy2972 116 KSLLSELGIESQCEITFVKR 135 (143)
Q Consensus 116 ~~tL~dyGI~~g~tl~fv~r 135 (143)
...|.+.||..|.+|.++.+
T Consensus 28 ~~rL~~mGl~pG~~V~V~~~ 47 (86)
T 2k4y_A 28 RRKIMDMGIVRGTEIYIEGK 47 (86)
T ss_dssp HHHHHHHTCCTTCEEEEEEE
T ss_pred HHHHHHCCCCCCCEEEEEEe
Confidence 46899999999999998865
No 345
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=22.59 E-value=51 Score=21.16 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.2
Q ss_pred cchhhhhCCCCCCEEEEEeee
Q psy2972 116 KSLLSELGIESQCEITFVKRL 136 (143)
Q Consensus 116 ~~tL~dyGI~~g~tl~fv~rl 136 (143)
...|.+.||..|.+|.++.+-
T Consensus 28 ~~rL~~lGl~pG~~v~V~~~~ 48 (85)
T 3mhx_A 28 ARRLRELGFVKGEEVRMVAKG 48 (85)
T ss_dssp HHHHHHTTCCTTCEEEEEESC
T ss_pred HHHHHHCCCCCCCEEEEEEeC
Confidence 368999999999999998764
No 346
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=22.57 E-value=1.5e+02 Score=18.67 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=36.0
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
+...||.++|-++|...++ .+|.-..+.+.. | +.++ .-.+..+-.+|++..
T Consensus 15 ~V~nl~~~~t~~~l~~~F~-~~G~i~~v~~~~-~--~afV---~f~~~~~a~~A~~~l 65 (103)
T 2dgu_A 15 FVRNLANTVTEEILEKAFS-QFGKLERVKKLK-D--YAFI---HFDERDGAVKAMEEM 65 (103)
T ss_dssp EEECCCTTCCHHHHHHHHH-HHSCEEEEEECS-S--CEEE---EESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEC-C--EEEE---EeCCHHHHHHHHHHH
Confidence 4568999999999998776 578766766621 2 3332 236888889998863
No 347
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=22.51 E-value=66 Score=21.77 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=37.2
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEE-Ee--CCce--EEEEecCCCCcHHHHHHHHHH
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QA--DNKK--FDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~V-k~--~g~~--~~V~V~~~~aTV~dLK~aI~~ 79 (143)
++..||.++|-++|...++ .+|.-..+.+ +. +|.+ +.++- -.+..+-.+|++.
T Consensus 7 ~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~---f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 7 FIGGLNWDTTEDNLREYFG-KYGTVTDLKIMKDPATGRSRGFGFLS---FEKPSSVDEVVKT 64 (167)
T ss_dssp EECSCCTTCCHHHHHHHHT-TTCCEEEEECCCCTTTSSCCSCEEEE---ESSTHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEECCCCCCccceEEEE---EccHHHHHHHHhc
Confidence 4578999999999998876 5788777777 43 3433 44432 2567777788874
No 348
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.49 E-value=1.3e+02 Score=17.99 Aligned_cols=51 Identities=8% Similarity=0.138 Sum_probs=36.0
Q ss_pred ccCCCCCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEecCCCCcHHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIER 79 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V~~~~aTV~dLK~aI~~ 79 (143)
...||.++|-+++...++ .+|.-..+.+..+ +.+.++- -.+..+-.+|++.
T Consensus 17 V~~l~~~~t~~~l~~~f~-~~G~i~~~~~~~~-kg~afV~---f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 17 VGGLGDTITETDLRNHFY-QFGEIRTITVVQR-QQCAFIQ---FATRQAAEVAAEK 67 (85)
T ss_dssp EECCTTTSCHHHHHHHHH-TTSCEEEEEEEGG-GTEEEEE---ESSHHHHHHHHHT
T ss_pred EcCCCCCCCHHHHHHHHH-hCCCEeEEEEECC-CCEEEEE---ECCHHHHHHHHHH
Confidence 458999999999998876 6888777777222 2344322 2577888888775
No 349
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=22.40 E-value=1.2e+02 Score=22.91 Aligned_cols=36 Identities=6% Similarity=0.173 Sum_probs=30.7
Q ss_pred CcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHh
Q psy2972 46 QSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQIT 82 (143)
Q Consensus 46 ~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~ 82 (143)
+.+.|.| ..||....+.| +++.|+.|+=+.+..++.
T Consensus 33 ~k~~v~v~~~d~~~k~i~v-~~~~ta~ev~~~L~~k~~ 69 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKSLMV-DERQLARDVLDNLFEKTH 69 (291)
T ss_dssp CEEEEEEECTTSCEEEEEE-ETTCBHHHHHHHHHHHHC
T ss_pred cceEEEEEcCCCceEEEEe-CCCCcHHHHHHHHHHHhC
Confidence 3477888 88999999999 889999999998888753
No 350
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=22.21 E-value=58 Score=19.27 Aligned_cols=20 Identities=5% Similarity=-0.004 Sum_probs=16.4
Q ss_pred ccchhhhhCCCCCCEEEEEe
Q psy2972 115 EKSLLSELGIESQCEITFVK 134 (143)
Q Consensus 115 d~~tL~dyGI~~g~tl~fv~ 134 (143)
-..-.+.+||+.||.|.|..
T Consensus 17 Pk~ir~~lgi~~Gd~v~i~~ 36 (53)
T 2l66_A 17 PAKVRQKFQIKEGDLVKVTF 36 (53)
T ss_dssp CHHHHHHSCCCTTCEEEEEE
T ss_pred CHHHHHHcCcCCCCEEEEEE
Confidence 35667789999999998875
No 351
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=22.16 E-value=77 Score=21.78 Aligned_cols=40 Identities=28% Similarity=0.462 Sum_probs=30.5
Q ss_pred hhccCCcEEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHH
Q psy2972 41 ELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQI 81 (143)
Q Consensus 41 al~~g~am~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~ 81 (143)
...-|..=.+.| ..+|-.|.|+| |.+.-+..-|+++++--
T Consensus 30 eslagkremviisf~ngatfqvev-pgsqh~~sqk~~~ermk 70 (104)
T 3chb_D 30 ESLAGKREMAIITFKNGATFQVEV-PGSQHIDSQKKAIERMK 70 (104)
T ss_dssp EECSTTCCEEEEECTTCCEEEECC-CCTTSCHHHHHHHHHHH
T ss_pred HhhcCceeEEEEEecCCcEEEEec-CcchhhhhhhhHHHHHH
Confidence 334455445556 77899999999 88889999999998854
No 352
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=22.08 E-value=28 Score=24.84 Aligned_cols=75 Identities=12% Similarity=0.304 Sum_probs=48.5
Q ss_pred cEEEEEEeC--CceEEEEecCCCCcHHHHHHHHHHHHhHhHhhcccccccccccccceEEEeeCC--cccccccchhhhh
Q psy2972 47 SIMCCIQAD--NKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDG--IKLTNEKSLLSEL 122 (143)
Q Consensus 47 am~l~Vk~~--g~~~~V~V~~~~aTV~dLK~aI~~~~~~~~~reg~~~~IsW~~vw~~~~Lif~g--kkL~~d~~tL~dy 122 (143)
+..|+|..+ +....+.| ..+.-|.-+=-.+-++. .+++ + |..+-|-... +-|..-..||..|
T Consensus 24 SWeL~V~V~d~~~~~~lrV-~GdlHIGGvmLkLVE~i-------~i~~--d----WSDhaLWWp~k~~WLlkt~~tLDk~ 89 (112)
T 2lgx_A 24 TWELSVHVTDVNRDVTLRV-TGEVHIGGVMLKLVEKL-------DVKK--D----WSDHALWWEKKRTWLLKTHWTLDKY 89 (112)
T ss_dssp CCCEECCBTTTTBCCEECC-CTTSCHHHHHHHHHHHC-------CSCC--C----SSSSBEEETTTTEEECCTTSCHHHH
T ss_pred cEEEEEEEecCCccEEEEE-eeccccccchhhhhhhh-------cccc--c----chHhhhhhhhhchhhhcchhhHhhh
Confidence 444555222 37788888 66678888777666653 1222 3 5555555533 3455668899999
Q ss_pred CCCCCCEEEEEee
Q psy2972 123 GIESQCEITFVKR 135 (143)
Q Consensus 123 GI~~g~tl~fv~r 135 (143)
||+..+.++|-..
T Consensus 90 giqADa~L~ftp~ 102 (112)
T 2lgx_A 90 GIQADAKLQFTPQ 102 (112)
T ss_dssp TCCTTCBBCBBC-
T ss_pred ceeccccceecCC
Confidence 9999999999765
No 353
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.66 E-value=52 Score=20.35 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=28.5
Q ss_pred cccCCCCCCCHHHHHhHHhhccCCcEEEEEEeCCceEEEEe
Q psy2972 23 TLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 23 ~L~dlp~~~t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V 63 (143)
+...||.++|-+++...++ .+|.-..+.+..+.+-+.++-
T Consensus 9 ~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~g~afV~ 48 (88)
T 1wf0_A 9 FVGRCTGDMTEDELREFFS-QYGDVMDVFIPKPFRAFAFVT 48 (88)
T ss_dssp EEESCCSSSCHHHHHHHST-TTSCCCEEECCSSCCSCCEEE
T ss_pred EEeCCCCCCCHHHHHHHHH-HcCCeeEEEEecCCCCEEEEE
Confidence 3568999999999998876 788877777722334455543
No 354
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=21.63 E-value=81 Score=21.99 Aligned_cols=34 Identities=9% Similarity=0.333 Sum_probs=28.5
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHHHh
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQIT 82 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~~~ 82 (143)
+-..| ..|.+.+++.+ +-++|+.+++.++.++..
T Consensus 10 i~~~Vy~~Dhsy~tvr~-~v~~sa~eIl~~va~kl~ 44 (104)
T 1wgy_A 10 IFCHVYITEHSYVSVKA-KVSSIAQEILKVVAEKIQ 44 (104)
T ss_dssp CCEEEECSSSCEEEECC-CTTCBSHHHHHHHHHHHT
T ss_pred eEEEEEeccCceEEEEE-eccchHHHHHHHHHHHhc
Confidence 34556 67888999999 888999999999999863
No 355
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.48 E-value=1.2e+02 Score=20.00 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=35.1
Q ss_pred ccCCCCCCCHHHHHhHHhhccCC-----cEEEEEEeCCce--EEEEecCCCCcHHHHHHHHH
Q psy2972 24 LSHLPQDVTVEEIKSEMELLHGQ-----SIMCCIQADNKK--FDIVISPKNTRVSDLKRTIE 78 (143)
Q Consensus 24 L~dlp~~~t~~ev~~~ial~~g~-----am~l~Vk~~g~~--~~V~V~~~~aTV~dLK~aI~ 78 (143)
+..||.++|-+||...+.= +|. .++|....+|++ +.++- -.+..+.++|++
T Consensus 22 V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~g~~~G~afV~---F~~~~~a~~Al~ 79 (118)
T 2db1_A 22 LRGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTREGRQSGEAFVE---LESEDDVKLALK 79 (118)
T ss_dssp EESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSSSCEEEEEEEE---BSSHHHHHHHGG
T ss_pred EeCCCCCCCHHHHHHHHHH-cCCccCceeEEEEECCCCCCCeEEEEE---ECCHHHHHHHHh
Confidence 5689999999999988753 454 444444223654 55543 468888888887
No 356
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=21.13 E-value=1.8e+02 Score=18.86 Aligned_cols=30 Identities=7% Similarity=0.238 Sum_probs=24.2
Q ss_pred CHHHHHhHHhhccCCcEEEEEEeCCceEEEEe
Q psy2972 32 TVEEIKSEMELLHGQSIMCCIQADNKKFDIVI 63 (143)
Q Consensus 32 t~~ev~~~ial~~g~am~l~Vk~~g~~~~V~V 63 (143)
+.+++...++- |..+.|+|.++|+.+.+.+
T Consensus 69 ~~~~~~~~l~~--~~~v~l~v~R~g~~~~~~v 98 (113)
T 2pzd_A 69 NAEDVYEAVRT--QSQLAVQIRRGRETLTLYV 98 (113)
T ss_dssp SHHHHHHHHHH--CSSEEEEEEETTEEEEEEE
T ss_pred CHHHHHHHHhC--CCeEEEEEEECCEEEEEEE
Confidence 57787777653 7899999966889888888
No 357
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=21.10 E-value=86 Score=24.79 Aligned_cols=32 Identities=13% Similarity=0.056 Sum_probs=26.9
Q ss_pred EEEEE-EeCCceEEEEecCCCCcHHHHHHHHHHH
Q psy2972 48 IMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQ 80 (143)
Q Consensus 48 m~l~V-k~~g~~~~V~V~~~~aTV~dLK~aI~~~ 80 (143)
--|+| ..||++..|.| +++.|+.||=..+..+
T Consensus 9 ~ivkv~~~d~ss~~l~V-~~~mta~ev~~~l~~k 41 (256)
T 3hk0_A 9 QDVKVFSEDGTSKVVEI-LADMTARDLCQLLVYK 41 (256)
T ss_dssp EEEEEEETTSCEEEEEE-CTTCBHHHHHHHHHCC
T ss_pred eEEEEEecCCcEEEEEE-CCCCCHHHHHHHHHHh
Confidence 45677 78899999999 8899999998777664
No 358
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=21.07 E-value=1.1e+02 Score=20.71 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=22.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHHh
Q psy2972 57 KKFDIVISPKNTRVSDLKRTIERQIT 82 (143)
Q Consensus 57 ~~~~V~V~~~~aTV~dLK~aI~~~~~ 82 (143)
..+.+.| +..||=.|+|+||+.-|.
T Consensus 22 n~~~F~V-~~~AnK~qIK~aVe~lf~ 46 (92)
T 3tve_T 22 GKYTFWV-HPKATKTEIKNAVETAFK 46 (92)
T ss_dssp TEEEEEE-CTTCCHHHHHHHHHHHTT
T ss_pred CEEEEEE-CCCCCHHHHHHHHHHHhC
Confidence 5688999 899999999999999985
No 359
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.26 E-value=1e+02 Score=19.80 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=21.8
Q ss_pred CCCHHHHHhHHhhcc-CCcEEEEEEeCCc
Q psy2972 30 DVTVEEIKSEMELLH-GQSIMCCIQADNK 57 (143)
Q Consensus 30 ~~t~~ev~~~ial~~-g~am~l~Vk~~g~ 57 (143)
..+.+|+...|.-.. |..++|+|.+++.
T Consensus 64 ~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 92 (96)
T 1ujv_A 64 NLSHTEVVDILKDCPIGSETSLIIHRGSG 92 (96)
T ss_dssp SCCHHHHHHHHHHSCTTSEEEEEEECCSS
T ss_pred CCCHHHHHHHHHcCCCCCEEEEEEEECCC
Confidence 457899999998764 8999999955554
Done!