Your job contains 1 sequence.
>psy2972
MKDLDQLLTETKEAIKNIRTQNTLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFD
IVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLS
ELGIESQCEITFVKRLKDKVRIK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2972
(143 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-050417-179 - symbol:zgc:112000 "zgc:112000"... 210 4.1e-17 1
UNIPROTKB|Q3ZBQ4 - symbol:SNRNP25 "U11/U12 small nuclear ... 207 8.6e-17 1
MGI|MGI:1925622 - symbol:Snrnp25 "small nuclear ribonucle... 207 8.6e-17 1
UNIPROTKB|Q9BV90 - symbol:SNRNP25 "U11/U12 small nuclear ... 204 1.8e-16 1
TAIR|locus:2077447 - symbol:AT3G07860 "AT3G07860" species... 156 2.2e-11 1
TAIR|locus:2145502 - symbol:AT5G25340 "AT5G25340" species... 116 5.6e-07 1
TAIR|locus:2016244 - symbol:AT1G80060 "AT1G80060" species... 117 7.4e-07 1
TAIR|locus:2116495 - symbol:AT4G32270 "AT4G32270" species... 116 9.1e-07 1
FB|FBgn0085342 - symbol:CG34313 species:7227 "Drosophila ... 90 3.2e-06 2
RGD|1310922 - symbol:Snrnp25 "small nuclear ribonucleopro... 103 9.0e-06 1
>ZFIN|ZDB-GENE-050417-179 [details] [associations]
symbol:zgc:112000 "zgc:112000" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND]
ZFIN:ZDB-GENE-050417-179 InterPro:IPR019955 PROSITE:PS50053
eggNOG:NOG69365 GeneTree:ENSGT00390000002628 HOGENOM:HOG000232002
HOVERGEN:HBG054397 KO:K13153 OMA:SWRYVWR OrthoDB:EOG43TZWN
EMBL:CU463855 EMBL:BC093151 IPI:IPI00511365 RefSeq:NP_001017690.1
UniGene:Dr.77390 SMR:Q567J5 Ensembl:ENSDART00000006783
GeneID:550385 KEGG:dre:550385 InParanoid:Q567J5 NextBio:20879636
Uniprot:Q567J5
Length = 173
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 45/135 (33%), Positives = 83/135 (61%)
Query: 6 QLLTETKEAIKNIRTQNTLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVIS 64
++L +E + I L LP VT+EE+ S++ L +GQ++ + +AD + IV+
Sbjct: 40 EILDIFEEGLALIVQDPLLCDLPIQVTLEEVNSQVALEYGQAMTVRVCKADGEVMPIVVV 99
Query: 65 PKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGI 124
T V DLK+ I R + ++ +R+G K +SW++VW+++ L F+G KL +++ L + G+
Sbjct: 100 QSAT-VLDLKKAIRRYMELKQQREGGVKHVSWKYVWRTFHLVFNGEKLEDDRRKLKDYGV 158
Query: 125 ESQCEITFVKRLKDK 139
++ E+TF K+L+ K
Sbjct: 159 RNRDEVTFSKKLRKK 173
>UNIPROTKB|Q3ZBQ4 [details] [associations]
symbol:SNRNP25 "U11/U12 small nuclear ribonucleoprotein 25
kDa protein" species:9913 "Bos taurus" [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
GO:GO:0008380 GO:GO:0006397 PROSITE:PS50053 GO:GO:0005689
EMBL:BC103171 IPI:IPI00698585 RefSeq:NP_001160084.1
UniGene:Bt.49366 ProteinModelPortal:Q3ZBQ4 SMR:Q3ZBQ4
Ensembl:ENSBTAT00000026387 GeneID:513526 KEGG:bta:513526 CTD:79622
eggNOG:NOG69365 GeneTree:ENSGT00390000002628 HOGENOM:HOG000232002
HOVERGEN:HBG054397 InParanoid:Q3ZBQ4 KO:K13153 OMA:SWRYVWR
OrthoDB:EOG43TZWN NextBio:20870895 ArrayExpress:Q3ZBQ4
Uniprot:Q3ZBQ4
Length = 123
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 41/117 (35%), Positives = 76/117 (64%)
Query: 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQIT 82
L LP VT+EE+ S++ L +GQ++ + + D + +V+ +N V DLK+ I+R +
Sbjct: 8 LCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVV-QNATVLDLKKAIQRYVQ 66
Query: 83 MQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVKRLKDK 139
++ +R+G + ISW +VW++Y L+ G KLT ++ L + GI ++ E++F+K+L+ K
Sbjct: 67 LRQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLRQK 123
>MGI|MGI:1925622 [details] [associations]
symbol:Snrnp25 "small nuclear ribonucleoprotein 25
(U11/U12)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] MGI:MGI:1925622 GO:GO:0008380 GO:GO:0006397
PROSITE:PS50053 GO:GO:0005689 EMBL:AY016021 CTD:79622
eggNOG:NOG69365 GeneTree:ENSGT00390000002628 HOGENOM:HOG000232002
HOVERGEN:HBG054397 KO:K13153 OMA:SWRYVWR OrthoDB:EOG43TZWN
EMBL:AK019452 EMBL:BC028766 IPI:IPI00314633 RefSeq:NP_084369.2
UniGene:Mm.29952 PDB:1V2Y PDBsum:1V2Y ProteinModelPortal:Q8VIK1
SMR:Q8VIK1 STRING:Q8VIK1 PRIDE:Q8VIK1 Ensembl:ENSMUST00000039601
GeneID:78372 KEGG:mmu:78372 InParanoid:Q8VIK1
EvolutionaryTrace:Q8VIK1 NextBio:348757 Bgee:Q8VIK1
Genevestigator:Q8VIK1 GermOnline:ENSMUSG00000040767 Uniprot:Q8VIK1
Length = 123
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 41/117 (35%), Positives = 76/117 (64%)
Query: 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQIT 82
L LP VT+EE+ S++ L +GQ++ + + D + +V+ +N V DLK+ I+R +
Sbjct: 8 LCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVV-QNATVLDLKKAIQRYVQ 66
Query: 83 MQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEITFVKRLKDK 139
++ +R+G + ISW +VW++Y L+ G KLT ++ L + GI ++ E++F+K+L+ K
Sbjct: 67 LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLRQK 123
>UNIPROTKB|Q9BV90 [details] [associations]
symbol:SNRNP25 "U11/U12 small nuclear ribonucleoprotein 25
kDa protein" species:9606 "Homo sapiens" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IC] GO:GO:0008380 EMBL:AE006462
GO:GO:0006397 InterPro:IPR019955 PROSITE:PS50053 GO:GO:0005689
EMBL:DQ431198 CTD:79622 eggNOG:NOG69365 HOGENOM:HOG000232002
HOVERGEN:HBG054397 KO:K13153 OMA:SWRYVWR OrthoDB:EOG43TZWN
EMBL:AK026593 EMBL:BC001381 EMBL:BC009179 EMBL:BK005201
IPI:IPI00550775 RefSeq:NP_078847.1 UniGene:Hs.15277
ProteinModelPortal:Q9BV90 SMR:Q9BV90 STRING:Q9BV90 DMDM:68052377
PRIDE:Q9BV90 DNASU:79622 Ensembl:ENST00000383018 GeneID:79622
KEGG:hsa:79622 UCSC:uc002cfj.4 GeneCards:GC16P000103
HGNC:HGNC:14161 neXtProt:NX_Q9BV90 PharmGKB:PA164726099
InParanoid:Q9BV90 PhylomeDB:Q9BV90 ChiTaRS:SNRNP25 GenomeRNAi:79622
NextBio:68693 ArrayExpress:Q9BV90 Bgee:Q9BV90 CleanEx:HS_SNRNP25
Genevestigator:Q9BV90 GermOnline:ENSG00000161981 Uniprot:Q9BV90
Length = 132
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 42/129 (32%), Positives = 79/129 (61%)
Query: 12 KEAIKNIRTQNTLSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRV 70
+E + + L LP VT+EE+ S++ L +GQ++ + + D + +V+ T V
Sbjct: 5 QEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSAT-V 63
Query: 71 SDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNEKSLLSELGIESQCEI 130
DLK+ I+R + ++ +R+G + ISW +VW++Y L+ G KLT ++ L + GI ++ E+
Sbjct: 64 LDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEV 123
Query: 131 TFVKRLKDK 139
+F+K+L+ K
Sbjct: 124 SFIKKLRQK 132
>TAIR|locus:2077447 [details] [associations]
symbol:AT3G07860 "AT3G07860" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0006626 "protein targeting to
mitochondrion" evidence=RCA] EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003676 GO:GO:0030529
eggNOG:NOG69365 KO:K13153 OMA:SWRYVWR EMBL:BT002826 EMBL:BT014863
IPI:IPI00521425 RefSeq:NP_187443.2 UniGene:At.40289
ProteinModelPortal:Q84WS8 EnsemblPlants:AT3G07860.1 GeneID:819977
KEGG:ath:AT3G07860 TAIR:At3g07860 InParanoid:Q84WS8
PhylomeDB:Q84WS8 ProtClustDB:CLSN2690777 ArrayExpress:Q84WS8
Genevestigator:Q84WS8 Uniprot:Q84WS8
Length = 165
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 36/139 (25%), Positives = 81/139 (58%)
Query: 10 ETK-EAIKNIRTQ----NTLSHLPQDVTVEEIKSEMELLHGQSI-MCCIQADNKKFDIVI 63
ETK E +K++ +Q L+ +P++ T+ ++ + + L G ++ + ++ D D+ +
Sbjct: 9 ETKREKLKSVLSQLLADPILADVPRNPTLSDVVTLVSLEKGSAMRLSVVKLDGSSLDVAV 68
Query: 64 SPKNTRVSDLKRTIERQITMQMKRKGLS-KQISWRHVWKSYWLSFDGIKLTNEKSLLSEL 122
T + DLK I++++ +M++ + + ISW+HVW ++ LS + KL ++ ++L ++
Sbjct: 69 MNSAT-LKDLKLLIKKKVN-EMEQANMGHRHISWKHVWSNFCLSCNNEKLLDDNAVLQDV 126
Query: 123 GIESQCEITFVKRLKDKVR 141
GI + ++TF+ + K R
Sbjct: 127 GIRNNSQVTFMPYVMKKGR 145
>TAIR|locus:2145502 [details] [associations]
symbol:AT5G25340 "AT5G25340" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] EMBL:CP002688 GenomeReviews:BA000015_GR
UniGene:At.19865 UniGene:At.72267 EMBL:BT005530 EMBL:AK118230
IPI:IPI00533362 RefSeq:NP_197916.1 ProteinModelPortal:Q8GXI1
SMR:Q8GXI1 DNASU:832606 EnsemblPlants:AT5G25340.1 GeneID:832606
KEGG:ath:AT5G25340 TAIR:At5g25340 eggNOG:NOG273177
HOGENOM:HOG000015150 InParanoid:Q8GXI1 OMA:SKISWSH PhylomeDB:Q8GXI1
ProtClustDB:CLSN2916406 ArrayExpress:Q8GXI1 Genevestigator:Q8GXI1
Uniprot:Q8GXI1
Length = 208
Score = 116 (45.9 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 28/81 (34%), Positives = 41/81 (50%)
Query: 52 IQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIK 111
++ D FD+ + T V DLK IE + + +KG SK ISW HVW + L F G K
Sbjct: 24 LKLDGSSFDVYVLTSAT-VGDLKVAIETAFS-HVPKKGPSK-ISWSHVWGHFCLCFGGQK 80
Query: 112 LTNEKSLLSELGIESQCEITF 132
L + + G++ E+ F
Sbjct: 81 LITDTDCIGNYGMKDGDEVRF 101
>TAIR|locus:2016244 [details] [associations]
symbol:AT1G80060 "AT1G80060" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] InterPro:IPR000626 SMART:SM00213
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0016301 EMBL:BT015934
EMBL:BT020549 IPI:IPI00517748 RefSeq:NP_178123.1 UniGene:At.33993
ProteinModelPortal:Q5XEN2 SMR:Q5XEN2 EnsemblPlants:AT1G80060.1
GeneID:844346 KEGG:ath:AT1G80060 TAIR:At1g80060 eggNOG:NOG331097
HOGENOM:HOG000140258 InParanoid:Q5XEN2 OMA:KTSIRYL PhylomeDB:Q5XEN2
ProtClustDB:CLSN2681882 Genevestigator:Q5XEN2 Uniprot:Q5XEN2
Length = 243
Score = 117 (46.2 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 26/93 (27%), Positives = 53/93 (56%)
Query: 45 GQSIMCCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQ-MKRKGLSKQISWRHVWKSY 103
G+ + ++ + FD+ ++ K+ V++LKR +E+ T+ ++ G+ ISW HVW +
Sbjct: 51 GRIKLSVVKLNGSLFDVEVA-KDCSVAELKRAVEQVFTISPLEGHGM---ISWSHVWGHF 106
Query: 104 WLSFDGIKLTNEKSLLSELGIESQCEITFVKRL 136
L + +L N+K+ + LG+ ++ FV+ L
Sbjct: 107 CLCYRDQRLVNDKTSIRYLGLNDGDQLHFVRHL 139
>TAIR|locus:2116495 [details] [associations]
symbol:AT4G32270 "AT4G32270" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005886 "plasma membrane" evidence=IDA]
GO:GO:0005886 EMBL:CP002687 GenomeReviews:CT486007_GR
HOGENOM:HOG000015150 EMBL:AK117743 IPI:IPI00536154
RefSeq:NP_194954.2 UniGene:At.46745 ProteinModelPortal:Q8GYB5
SMR:Q8GYB5 EnsemblPlants:AT4G32270.1 GeneID:829360
KEGG:ath:AT4G32270 TAIR:At4g32270 OMA:RFIRHIS PhylomeDB:Q8GYB5
ProtClustDB:CLSN2699109 Genevestigator:Q8GYB5 Uniprot:Q8GYB5
Length = 239
Score = 116 (45.9 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 52 IQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIK 111
++ D F I + K V +LK +E + + G K ISW HVW + LS++ +
Sbjct: 43 LKLDGSSFGIQVL-KTATVGELKMAVEAAFS-HLPISGPGK-ISWPHVWGQFCLSYEDKR 99
Query: 112 LTNEKSLLSELGIESQCEITFVKRLKD 138
L NE L+E GI+ ++ F++ + +
Sbjct: 100 LINESEYLTEFGIKDGDQLRFIRHISN 126
>FB|FBgn0085342 [details] [associations]
symbol:CG34313 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] EMBL:AE014134 RefSeq:NP_001097169.1 UniGene:Dm.4037
ProteinModelPortal:A8DZ10 EnsemblMetazoa:FBtr0112511 GeneID:5740766
KEGG:dme:Dmel_CG34313 UCSC:CG34313-RA FlyBase:FBgn0085342
eggNOG:NOG256220 InParanoid:A8DZ10 OMA:WRFLWRC OrthoDB:EOG48PK21
PhylomeDB:A8DZ10 NextBio:20891804 Uniprot:A8DZ10
Length = 281
Score = 90 (36.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 7 LLTETKEAIKNI-RTQNTLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADN-KKFDIVIS 64
+L T E ++ I + TLS +P D+T E++ E+ + G++ +Q D +V+
Sbjct: 92 MLASTSEELRRILQDVETLSDIPHDITNVELQGEIAIAEGRATTIYVQRDGLSTLTVVLH 151
Query: 65 PKNTRVSDLKRTIERQITMQMKR 87
++ LKR I Q KR
Sbjct: 152 QHEPTIAQLKRAIALISRAQHKR 174
Score = 66 (28.3 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 94 ISWRHVWKSYWL-SFDGIK-LTNEKS----LLSELGIESQCEITFVKRLK 137
+SWR +W+ + L + D + + +++S L ELGIE+ + FV R+K
Sbjct: 224 VSWRFLWRCFGLLNVDTNQPIDDQRSSGRATLKELGIENAATLKFVHRVK 273
>RGD|1310922 [details] [associations]
symbol:Snrnp25 "small nuclear ribonucleoprotein 25 (U11/U12)"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] RGD:1310922 OrthoDB:EOG43TZWN EMBL:AC096051
IPI:IPI00951966 Ensembl:ENSRNOT00000067079 UCSC:RGD:1310922
ArrayExpress:D3ZR09 Uniprot:D3ZR09
Length = 119
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 24 LSHLPQDVTVEEIKSEMELLHGQSIMCCI-QADNKKFDIVISPKNTRVSDLKRTIERQIT 82
L LP VT+EE+ S++ L +GQ++ + + D + +V+ +N V DLK+ I+R +
Sbjct: 8 LCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVV-QNATVLDLKKAIQRYVQ 66
Query: 83 MQMKRKGLSKQIS 95
++ +R+G + IS
Sbjct: 67 LKQEREGGVQHIS 79
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.131 0.372 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 143 143 0.00091 102 3 11 22 0.44 31
30 0.48 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 583 (62 KB)
Total size of DFA: 139 KB (2086 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.74u 0.07s 16.81t Elapsed: 00:00:16
Total cpu time: 16.74u 0.07s 16.81t Elapsed: 00:00:16
Start: Thu Aug 15 11:59:00 2013 End: Thu Aug 15 11:59:16 2013