RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2972
(143 letters)
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: d.15.1.1
Length = 105
Score = 89.3 bits (221), Expect = 3e-24
Identities = 30/86 (34%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 54 ADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLT 113
D + +V+ +N V DLK+ I+R + ++ +R+G + ISW +VW++Y L+ G KLT
Sbjct: 15 MDGEVMPVVV-VQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLT 73
Query: 114 NEKSLLSELGIESQCEITFVKRLKDK 139
++ L + GI ++ E++F+K+L K
Sbjct: 74 EDRKKLRDYGIRNRDEVSFIKKLGQK 99
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 5e-04
Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 30/139 (21%)
Query: 17 NIRTQNTLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKFDIVI-------SPKNTR 69
+I T LS + DV ++ + LH S ++ K+ I I K
Sbjct: 386 HIPTI-LLSLIWFDVIKSDVMVVVNKLHKYS---LVEKQPKESTISIPSIYLELKVKLEN 441
Query: 70 VSDL-KRTIER-QITMQMKRKGLSKQISWRHVWKSYWLSFDG-----IKLTNEKSLLSEL 122
L + ++ I L Y+ S G I+ +L +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPP-----YLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 123 GIESQCEITFVKRLKDKVR 141
+ + F+++ K+R
Sbjct: 497 FL----DFRFLEQ---KIR 508
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.003
Identities = 7/41 (17%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 1 MKDLDQLLTETKEAIKNIRTQN-TLSHLPQDVTVEEIKSEM 40
++ LD + + I+ Q + L + +++EE++ +
Sbjct: 1859 LRALDTV----TNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco,
photosynthesis, alpha/beta barrel, N-methylmethioni
translational modification, lyase; HET: KCX CAP; 1.35A
{Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S*
8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C*
1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S*
4rub_S*
Length = 128
Score = 29.2 bits (65), Expect = 0.24
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 16 KNIRTQNTLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKF 59
+ I+ TLS+LP +TVE++ ++E L + C++ F
Sbjct: 7 EGIKKFETLSYLP-PLTVEDLLKQIEYLLRSKWVPCLEFSKVGF 49
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 28.5 bits (63), Expect = 0.76
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 50 CCIQADNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDG 109
C + A + + ++ V L+ I ++ M + + S +G
Sbjct: 441 CYVCASKPEVTVRLNVHKVTVLTLQDKIVKE-KFAMVAPDVQIEDGKG---TILISSEEG 496
Query: 110 IKLTNEKSLLSELGIESQCEIT 131
N LSE GI + +
Sbjct: 497 ETEANNHKKLSEFGIRNGSRLQ 518
>3r7a_A Phosphoglycerate mutase, putative; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE EPE; 1.84A {Bacillus anthracis}
Length = 237
Score = 28.4 bits (64), Expect = 0.79
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 8/44 (18%)
Query: 56 NKKFDIVISPKNTRVSDLKRTIE--RQITMQMKRKGLSKQISWR 97
+ F S SD R IE + ++ L + +
Sbjct: 57 DIHFMNAYS------SDSGRAIETANLVLKYSEQSKLKLEQRKK 94
>1uf0_A Serine/threonine-protein kinase dcamkl1; structural genomics,
ubiquitin-like fold, microtubule- binding; NMR {Homo
sapiens} SCOP: d.15.11.1
Length = 116
Score = 26.8 bits (59), Expect = 1.4
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 2 KDLDQLLTE-TKEAIKNIRTQNTLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKF 59
+ + LL + T+ N+ + + +++I S +L+ G+S +C + F
Sbjct: 36 RSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGESYVCG---SIEPF 91
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: d.15.1.1
Length = 102
Score = 26.5 bits (58), Expect = 1.8
Identities = 9/87 (10%), Positives = 30/87 (34%), Gaps = 16/87 (18%)
Query: 55 DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTN 114
F + ++P + +S+ + E + + + + + LT+
Sbjct: 20 TEVTFSLQVNP-DFELSNFRVLCELESGVPA-----EEAQ----------IVYMEQLLTD 63
Query: 115 EKSLLSELGIESQCEITFVKRLKDKVR 141
+ L G++ + +++ +R
Sbjct: 64 DHCSLGSYGLKDGDMVVLLQKDNVGLR 90
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel,
lyase; 1.80A {Halothiobacillus neapolitanus} SCOP:
d.73.1.1
Length = 110
Score = 26.5 bits (58), Expect = 2.3
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 16 KNIRTQNTLSHLPQDVTVEEIKSEMELLHGQSIMCCIQADNKKF 59
K T S+LP + E I+++++ Q I+ K
Sbjct: 8 KQSLKYETFSYLP-PMNAERIRAQIKYAIAQGWSPGIEHVEVKN 50
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 26.3 bits (58), Expect = 3.8
Identities = 6/73 (8%), Positives = 19/73 (26%), Gaps = 17/73 (23%)
Query: 54 ADNKKFDIVISPKNTR----------------VSDLKRTIERQITMQMKRKGLSKQISWR 97
+ +++ V ++K +E + + S R
Sbjct: 56 VPGRPGKVLVPKFKREIFENFLKQSGVQYKLEVENVKEQLELEDQLLAAAAAKSNSTRSR 115
Query: 98 HVWKSYWLSFDGI 110
+ S++ +
Sbjct: 116 LSFDKIH-SYEEV 127
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 327
Score = 26.3 bits (59), Expect = 4.2
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 1 MKDLDQLLTETKEAIKNIRTQNTLSHL 27
M L +L+ K AI L ++
Sbjct: 1 MSHLAELVASAKAAISQASDVAALDNV 27
>1a78_A Galectin-1; S-lectin, carbohydrate binding, complex
(lectin/saccharide); HET: TDG; 2.00A {Bufo arenarum}
SCOP: b.29.1.3 PDB: 1gan_A*
Length = 134
Score = 25.6 bits (56), Expect = 4.8
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 34 EEIKSEMELLHGQSIMCCIQADNKKFDIVI 63
E+ + G +M C + +K I
Sbjct: 72 EQREEVFPFQQGAEVMVCFEYQTQKIIIKF 101
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: d.15.1.1 PDB: 2kx3_A
Length = 90
Score = 24.5 bits (53), Expect = 9.0
Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 56 NKKFDIVISPKNTRVSDLKRTIERQITMQMKR-KGLSKQISWRHVWKSYWLSFDGIK 111
+++ + ++ V DLK+ ++ + +R K L ++ + L +K
Sbjct: 16 GQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLK 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.372
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,061,852
Number of extensions: 106434
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 21
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.8 bits)