RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2972
(143 letters)
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 105
Score = 60.5 bits (146), Expect = 1e-13
Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 55 DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTN 114
D + +V+ T V DLK+ I+R + ++ +R+G + ISW +VW++Y L+ G KLT
Sbjct: 16 DGEVMPVVVVQNAT-VLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTE 74
Query: 115 EKSLLSELGIESQCEITFVKRLKDK 139
++ L + GI ++ E++F+K+L K
Sbjct: 75 DRKKLRDYGIRNRDEVSFIKKLGQK 99
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Alcaligenes eutrophus [TaxId:
106590]}
Length = 129
Score = 28.6 bits (64), Expect = 0.15
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 20 TQNTLSHLPQDVTVEEIKSEMELLHGQ 46
TQ T S LP ++T E+I ++E Q
Sbjct: 4 TQGTFSFLP-ELTDEQITKQLEYCLNQ 29
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Galdieria partita [TaxId:
83374]}
Length = 138
Score = 27.9 bits (62), Expect = 0.33
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 20 TQNTLSHLPQDVTVEEIKSEMELL 43
TQ T S LP D+T E+IK +++ +
Sbjct: 4 TQGTFSFLP-DLTDEQIKKQIDYM 26
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 92
Score = 26.7 bits (59), Expect = 0.52
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 33 VEEIKSEMELLHGQSIMCCIQADNKKFDIVISP 65
++I G I + N++ I + P
Sbjct: 49 GDDIAKATGDWKGLRITVKLTIQNRQAQIEVVP 81
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 26.5 bits (58), Expect = 0.57
Identities = 9/88 (10%), Positives = 28/88 (31%), Gaps = 16/88 (18%)
Query: 55 DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTN 114
F + ++P +S+ + E + + + + LT+
Sbjct: 20 TEVTFSLQVNPDFE-LSNFRVLCELE---------------SGVPAEEAQIVYMEQLLTD 63
Query: 115 EKSLLSELGIESQCEITFVKRLKDKVRI 142
+ L G++ + +++ +R
Sbjct: 64 DHCSLGSYGLKDGDMVVLLQKDNVGLRT 91
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 90
Score = 25.7 bits (56), Expect = 0.97
Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 13/80 (16%)
Query: 56 NKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTNE 115
+++ + ++ V DLK+ ++ + +R+ K L G N+
Sbjct: 16 GQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQ------------KLLGLKVKGKPAEND 63
Query: 116 KSLLSELGIESQCEITFVKR 135
L L ++ +I +
Sbjct: 64 VK-LGALKLKPNTKIMMMGT 82
>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor
TrkA, different domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 26.1 bits (56), Expect = 1.1
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 4/31 (12%)
Query: 25 SHLPQDVTVEEIKSEMELLHGQSIMCCIQAD 55
SH+P V + +H I +
Sbjct: 1 SHMPASVQLHTAVE----MHHWCIPFSVDGQ 27
>d1ulea_ b.29.1.3 (A:) Galectin-2 {Inky cap fungus (Coprinopsis
cinerea) [TaxId: 5346]}
Length = 150
Score = 26.0 bits (57), Expect = 1.5
Identities = 5/30 (16%), Positives = 8/30 (26%)
Query: 34 EEIKSEMELLHGQSIMCCIQADNKKFDIVI 63
EE E + + +F I
Sbjct: 75 EERIPYAEKFRPPNPSITVIDHGDRFQIRF 104
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500
(2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 24.9 bits (54), Expect = 2.4
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 19/81 (23%)
Query: 55 DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKGLSKQISWRHVWKSYWLSFDGIKLTN 114
++ + V P++T V LK QMK L + G L +
Sbjct: 16 NDTEELAVARPEDT-VGTLKSKYFPGQESQMK------------------LIYQGRLLQD 56
Query: 115 EKSLLSELGIESQCEITFVKR 135
LS L I + C I +
Sbjct: 57 PARTLSSLNITNNCVIHCHRS 77
>d2nn8a1 b.29.1.3 (A:114-250) Galectin-3 CRD {Human (Homo sapiens)
[TaxId: 9606]}
Length = 137
Score = 24.5 bits (53), Expect = 3.8
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 34 EEIKSEMELLHGQSIMCCIQADNKKFDIVI 63
EE +S G+ + + F + +
Sbjct: 71 EERQSVFPFESGKPFKIQVLVEPDHFKVAV 100
>d1hlca_ b.29.1.3 (A:) S-lac lectin, L-14-II {Human (Homo sapiens)
[TaxId: 9606]}
Length = 129
Score = 24.0 bits (52), Expect = 6.7
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 34 EEIKSEMELLHGQSIMCCIQADNKKFDIVI 63
E+ + + G + + ++ KF + +
Sbjct: 65 EQREDHLCFSPGSEVKFTVTFESDKFKVKL 94
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 280
Score = 24.2 bits (51), Expect = 7.1
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 12/89 (13%)
Query: 55 DNKKFDIVISPKNTRVSDLKRTIERQITMQMKRKG------LSKQISWRHVWKSYWLSFD 108
+ +K+D + + + + +S W +WK Y F
Sbjct: 120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFP 179
Query: 109 GIKLTNE------KSLLSELGIESQCEIT 131
L +L LG++ +C
Sbjct: 180 QDDLCQYITSDDLTQMLDNLGLKYECYDL 208
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.372
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 514,615
Number of extensions: 21831
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 23
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.4 bits)