BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2973
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 82/202 (40%), Gaps = 34/202 (16%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRF 254
K + C C F R L +H + H KP KC CGKSFS+ L H TH + +
Sbjct: 20 KPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPY 78
Query: 255 KCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSV 314
KCP CGK + H H+G+ Y C C KSF L+ H H+ E KC
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE 138
Query: 315 CDRLYKSDYLRRKHERSHSSIFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCND 374
C + + + H+R+H+ E+P++C +
Sbjct: 139 CGKSFSREDNLHTHQRTHTG--------------------------------EKPYKCPE 166
Query: 375 CGSTFRLKRHLNSHINRLHKLK 396
CG +F + LN H R H K
Sbjct: 167 CGKSFSRRDALNVH-QRTHTGK 187
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 3/165 (1%)
Query: 146 KSFTKKLHTRKYNDKFSFGENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMK 205
KSF++ H ++ + GE +KC C F + +H H K +KC C
Sbjct: 29 KSFSRSDHLAEHQRTHT-GEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKCPECGKS 86
Query: 206 FHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRH 265
F ++ +L+ H + H KP C CGKSFS + L+ H TH + +KCP CGK
Sbjct: 87 FSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSR 145
Query: 266 KQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTS 310
+ H H+G+ Y C C KSF + +L H H+ + TS
Sbjct: 146 EDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS 190
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 14/180 (7%)
Query: 275 MHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSHSS 334
+ G+ Y C C KSF L H H+ E KC C + + +H+R+H+
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 335 --IFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRL 392
++C C K S +R H E+P+ C +CG +F HL +H R
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTH------TGEKPYACPECGKSFSQLAHLRAH-QRT 127
Query: 393 H--KLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVH 450
H + C C F+ + L+ H T H+G K +KC +C F L H + H
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTHQRT-HTG--EKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 74/180 (41%), Gaps = 19/180 (10%)
Query: 336 FQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLH-- 393
+ C C K S + H E+P++C +CG +F K+ L H R H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTH------TGEKPYKCPECGKSFSDKKDLTRH-QRTHTG 74
Query: 394 KLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVHEKN 453
+ C C F+ + L H T H+G K + C +C F +L+ H + H
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRT-HTG--EKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Query: 454 RNMLDSSCNECGKQYKWESFLQKHKKICTTT----CKSCGKRYSSIYVLRNHVKSCYGQQ 509
+ C ECGK + E L H++ T C CGK +S L H ++ G++
Sbjct: 132 KPY---KCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 37/150 (24%)
Query: 364 DNTERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGP 423
+ E+P+ C +CG +F HL H QR H+G
Sbjct: 16 EPGEKPYACPECGKSFSRSDHLAEH---------------------QRT-------HTG- 46
Query: 424 NYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKICTT 483
K +KC +C F K+L RH + H + C ECGK + + L+ H++ T
Sbjct: 47 -EKPYKCPECGKSFSDKKDLTRHQRTHTGEKPY---KCPECGKSFSQRANLRAHQRTHTG 102
Query: 484 ----TCKSCGKRYSSIYVLRNHVKSCYGQQ 509
C CGK +S + LR H ++ G++
Sbjct: 103 EKPYACPECGKSFSQLAHLRAHQRTHTGEK 132
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 39/81 (48%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYT 283
KP KC CGKSFS +S L+ H TH + +KCP CGK H H+G+ Y
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 284 CTYCEKSFLYKKSLKHHLFVH 304
C C KSF L H H
Sbjct: 63 CPECGKSFSRSDHLSRHQRTH 83
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRF 254
K +KC C F + +L+KH + H KP KC CGKSFS +S L+ H TH + +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 255 KCPICGKHIRHKQTFDDHMNMH 276
KCP CGK + DH++ H
Sbjct: 62 KCPECGKSF----SRSDHLSRH 79
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 254 FKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+KCP CGK H H+G+ Y C C KSF L+ H H+ E KC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 314 VCDRLY-KSDYLRRKHERSH 332
C + + +SD+L R H+R+H
Sbjct: 65 ECGKSFSRSDHLSR-HQRTH 83
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 165 ENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLKLK 224
E +KC C F Q +KH H K +KC C F + L+KH + H K
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKH-QRTHTGEK 59
Query: 225 PCKCEVCGKSFSNNSTLKVHSTTHAD 250
P KC CGKSFS + L H TH +
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQRTHQN 85
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKICTTT- 484
K +KC +C F + NL++H + H + C ECGK + S LQKH++ T
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPY---KCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 485 ---CKSCGKRYSSIYVLRNHVKS 504
C CGK +S L H ++
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQRT 82
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH--KLKLNCVHCQAIFTNKQRLNYHILTKHSGPN 424
E+P++C +CG +F +L H R H + C C F+ L H T H+G
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRT-HTG-- 57
Query: 425 YKAWKCEKCDMRFVTNKNLKRHMKVHE 451
K +KC +C F + +L RH + H+
Sbjct: 58 EKPYKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 311 KCSVCDRLYKSDYLRRKHERSHSS--IFQCRICDKILSNIQGIRRHMENMHNSDKDNTER 368
KC C + + +KH+R+H+ ++C C K S +++H E+
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH------TGEK 59
Query: 369 PFQCNDCGSTFRLKRHLNSHINRLHKLK 396
P++C +CG +F HL+ H R H+ K
Sbjct: 60 PYKCPECGKSFSRSDHLSRH-QRTHQNK 86
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 146 KSFTKKLHTRKYNDKFSFGENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMK 205
KSF++ + +K+ + GE +KC C F Q +KH H K +KC C
Sbjct: 12 KSFSQSSNLQKHQRTHT-GEKPYKCPECGKSFSQSSDLQKHQR-THTGEKPYKCPECGKS 69
Query: 206 FHRQVSLKKH 215
F R L +H
Sbjct: 70 FSRSDHLSRH 79
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%)
Query: 254 FKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
F C ICGK + T H+ +HS Y C YC K F K +K H F+H+ E KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 314 VCDRLYKSDYLRRKHERSHSS 334
VC + + H R H+
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 168 FKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCK 227
F C+ C F++ H+ +H + + C+ C +FH++ +KKH +H KP K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHK 59
Query: 228 CEVCGKSFSNNSTLKVHSTTHA 249
C+VCGK+FS +S L HS H
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHT 81
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%)
Query: 228 CEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYC 287
C++CGKSF +STL H H+D + C CGK K H +H+G+ + C C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 288 EKSFLYKKSLKHH 300
K+F +L H
Sbjct: 64 GKAFSQSSNLITH 76
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 197 FKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
F C++C F R +L H+ +H +P C+ CGK F S +K H+ H + KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 257 PICGKHIRHKQTFDDHMNMHSG 278
+CGK H H+G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 427 AWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKICTTT-- 484
++ C+ C F + L H+ +H R C CGK++ +S ++KH I T
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPY---PCQYCGKRFHQKSDMKKHTFIHTGEKP 57
Query: 485 --CKSCGKRYSSIYVLRNHVK 503
C+ CGK +S L H +
Sbjct: 58 HKCQVCGKAFSQSSNLITHSR 78
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 264 RHKQTFDDHMNM-HSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSD 322
R K DDH + G V Y C C++S++ SL+ H +HS E C C++++
Sbjct: 4 RMKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLA 63
Query: 323 YLRRKHERSHSS--IFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGS 377
R KHE H+ +QC C K N Q + H++++H+ D + ++ + C S
Sbjct: 64 EYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRS 120
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 228 CEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYC 287
C VC +S+ ++L+ H H+ + ++ C C K + H H+G+ +Y C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 288 EKSFLYKKSLKHHL-FVHSSE 307
KSF+ + + H+ VHS +
Sbjct: 85 GKSFINYQFMSSHIKSVHSQD 105
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 197 FKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
+ C VC + SL++H +H K C C K F H H + R++C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFN-IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQC 81
Query: 257 PICGKHIRHKQTFDDHM-NMHSGD 279
CGK + Q H+ ++HS D
Sbjct: 82 LACGKSFINYQFMSSHIKSVHSQD 105
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 428 WKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKICTTT--- 484
+ C C +V +L+RH +H + C C K + + KH+ T
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKY---PCRYCEKVFPLAEYRTKHEIHHTGERRY 79
Query: 485 -CKSCGKRYSSIYVLRNHVKSCYGQ 508
C +CGK + + + +H+KS + Q
Sbjct: 80 QCLACGKSFINYQFMSSHIKSVHSQ 104
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 227 KCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMN---MHSGDVKYT 283
+C C K F + LKVH+ H + F+CP CGK K+ +H M+ + +T
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 284 CTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSH 332
C+ C+++F + L+ H+ H+ E KCS C + ++++K +SH
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQ----QFMQKKDLQSH 113
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 198 KCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHA---DQGRF 254
+C C KF + LK H H KP +C CGK + L H + + F
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 255 KCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLF-VHSS 306
C +C + R + HM H+G++ Y C+ C + F+ KK L+ H+ +HS
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 11/122 (9%)
Query: 277 SGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSH---- 332
SG C C K FL K LK H H+ E +C C + Y +HE +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 333 -SSIFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINR 391
+F C +C + +R HM + E P++C+ C F K+ L SH+ +
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVS------HTGEMPYKCSSCSQQFMQKKDLQSHMIK 116
Query: 392 LH 393
LH
Sbjct: 117 LH 118
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 311 KCSVCDRLYKSDYLRRKHERSHSS--IFQCRICDKILSNIQGIRRHMENMHNSDKDNTER 368
+C C + + S Y + H R H+ F+C C K + + +E+ + + +E+
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENL---LEHEARNCMNRSEQ 65
Query: 369 PFQCNDCGSTFRLKRHLNSH-INRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPN 424
F C+ C TFR + L H ++ ++ C C F K+ L H++ HSGP+
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 146 KSFTKKLHTRKYNDKFSFGENKFKCQFCPMWFEQRGKRRKHV--NGVHLKIKRFKCEVCP 203
K F K + + +N K + GE F+C C + ++ +H N ++ + F C VC
Sbjct: 15 KKFLSKYYLKVHNRKHT-GEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQ 73
Query: 204 MKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVH 244
F R++ L+ H+ H P KC C + F L+ H
Sbjct: 74 ETFRRRMELRLHM-VSHTGEMPYKCSSCSQQFMQKKDLQSH 113
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 198 KCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCP 257
KCEVC F R+ LK H+ H +KP KC+ C + +++S+L H H+D+ FKC
Sbjct: 10 KCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 258 ICGKHIRHKQTFDDHMNMHSGD 279
IC R+ H+ H+GD
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGD 90
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%)
Query: 249 ADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEF 308
G KC +CGK K HM H+G Y C C+ + SL HL +HS E
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
Query: 309 TSKCSVCDRLYKSDYLRRKHERSHS 333
KC +C ++ H RSH+
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSHT 88
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%)
Query: 225 PCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTC 284
P KCEVCGK FS LK H H +KC C + + H+ +HS + + C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 285 TYCEKSFLYKKSLKHHLFVHSSE 307
C + L HL H+ +
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGD 90
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 311 KCSVCDRLYKSDYLRRKHERSHSSI--FQCRICDKILSNIQGIRRHMENMHNSDKDNTER 368
KC VC + + + H R H+ + ++C+ CD ++ + +H+ +H+ ER
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSD-----ER 63
Query: 369 PFQCNDCGSTFR----LKRHLNSHIN 390
PF+C C R L HL SH
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 399 CVHCQAIFTNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNR 454
C C F+ K +L H+ H+G K +KC+ CD + +L +H+++H R
Sbjct: 11 CEVCGKCFSRKDKLKTHMRC-HTG--VKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 222 KLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVK 281
KL PC+C GKSF++ S H + H + C +CGK + K HM +H+G
Sbjct: 9 KLYPCQC---GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 282 YTCTYCEKSFLYKKSLKHHL 301
Y C C K F+++ S H+
Sbjct: 66 YECNICAKRFMWRDSFHRHV 85
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 259 CGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRL 318
CGK HK D HM+MH G Y C C K F K L H+ +H+ +C++C +
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 319 Y 319
+
Sbjct: 75 F 75
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRF 254
K + C+ C F + +H+ ++HL L+P C VCGK F L H H +
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPY 66
Query: 255 KCPICGKHIRHKQTFDDHMN 274
+C IC K + +F H+
Sbjct: 67 ECNICAKRFMWRDSFHRHVT 86
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 396 KLNCVHCQAIFTNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRN 455
KL C FT+K + + H ++ H G + + C C +F +L HMK+H
Sbjct: 9 KLYPCQCGKSFTHKSQRDRH-MSMHLG--LRPYGCGVCGKKFKMKHHLVGHMKIHT---G 62
Query: 456 MLDSSCNECGKQYKWESFLQKHKKICT 482
+ CN C K++ W +H CT
Sbjct: 63 IKPYECNICAKRFMWRDSFHRHVTSCT 89
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 277 SGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSHSSI- 335
SGD Y C C KSF +K H+ +H C VC + +K + H + H+ I
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 336 -FQCRICDKILSNIQGIRRHMEN 357
++C IC K RH+ +
Sbjct: 65 PYECNICAKRFMWRDSFHRHVTS 87
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKICTTT- 484
K + C+ C F RHM +H R C CGK++K + L H KI T
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPY---GCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 485 ---CKSCGKRYSSIYVLRNHVKSC 505
C C KR+ HV SC
Sbjct: 65 PYECNICAKRFMWRDSFHRHVTSC 88
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 368 RPFQCNDCGSTFRLKRHLNSHINRLHKLK-LNCVHCQAIFTNKQRLNYHILTKHSGPNYK 426
RP+ C CG F++K HL H+ +K C C F + + H+ + +Y+
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTS--CTKSYE 93
Query: 427 AWKCEK 432
A K E+
Sbjct: 94 AAKAEQ 99
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 146 KSFTKKLHTRKYNDKFSFGENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMK 205
KSFT K R + G + C C F+ + H+ +H IK ++C +C +
Sbjct: 17 KSFTHKSQ-RDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKR 74
Query: 206 FHRQVSLKKHVEAVHLKLKPCKCE 229
F + S +HV + + K E
Sbjct: 75 FMWRDSFHRHVTSCTKSYEAAKAE 98
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 202 CPMKFHRQVSLKKHVEA----VHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCP 257
C F +++KH+ VH+ C CGK+F +S LK H H + F+C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHV------CAECGKAFVESSKLKRHQLVHTGEKPFQCT 66
Query: 258 I--CGKHIRHKQTFDDHMNMHSGDVKYTCTY--CEKSFLYKKSLKHHLFVHS 305
CGK H+ +H+GD Y C + C K F +LK H+ H+
Sbjct: 67 FEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 226 CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
C + C K F +NS ++ H TH + C CGK H +H+G+ + CT
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLHTHGPRVHV-CAECGKAFVESSKLKRHQLVHTGEKPFQCT 66
Query: 286 Y--CEKSFLYKKSLKHHLFVHSSEFTSKCSV--CDRLYKSDYLRRKHERSHS 333
+ C K F +L+ H+ +H+ + C C++ + + H +H+
Sbjct: 67 FEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 423 PNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKICT 482
P A + C F N +++H+ H ++ C ECGK + S L++H+ + T
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHV----CAECGKAFVESSKLKRHQLVHT 58
Query: 483 T------TCKSCGKRYSSIYVLRNHVK 503
T + CGKR+S + LR HV+
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTHVR 85
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 259 CGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSV--CD 316
C K R H++ H V + C C K+F+ LK H VH+ E +C+ C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRV-HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 317 RLYKSDYLRRKHERSHSS 334
+ + D+ R H R H+
Sbjct: 72 KRFSLDFNLRTHVRIHTG 89
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 37/144 (25%)
Query: 315 CDRLYKSDYLRRKHERSHSS-IFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCN 373
C ++++ + RKH +H + C C K ++RH + +H E+PFQC
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRH-QLVHTG-----EKPFQCT 66
Query: 374 --DCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYKAWKCE 431
CG F L +L +H+ H+G +
Sbjct: 67 FEGCGKRFSLDFNLRTHVR----------------------------IHTGDRPYVCPFD 98
Query: 432 KCDMRFVTNKNLKRHMKVHEKNRN 455
C+ +F + NLK H+ H K +N
Sbjct: 99 GCNKKFAQSTNLKSHILTHAKAKN 122
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 228 CEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYC 287
C+ CG+ F+ + L +H TH D+ + C IC K R + DH +HS + + C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 288 EKSFLYKKSLKHHLFVH 304
K F ++L H +H
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 167 KFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPC 226
+F C+FC F + H H + + C++C F RQ L+ H +H K KP
Sbjct: 17 EFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPF 74
Query: 227 KCEVCGKSFSNNSTLKVHSTTH 248
KC+ CGK F + TL VH T H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRF 254
K F C+ C F + +L H E H +P C++C K+F L+ H H+ + F
Sbjct: 16 KEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 255 KCPICGKHIRHKQTFDDHMNMH 276
KC CGK +T H +H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 254 FKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
F C CG+H H H+ + YTC C K+F + L+ H ++HS E KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 314 VCDRLY 319
C + +
Sbjct: 78 ECGKGF 83
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 254 FKCPI--CGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSK 311
+ CP+ C + K D H+ +H+G + C C ++F + SL H+ H+ E
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 312 CSVCDRLYKSDYLRRKHERSH 332
C +C R + + + R +H + H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 200 EVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPIC 259
E C +F ++ +L H+ +H KP +C +C ++FS ++L H TH + F C IC
Sbjct: 10 ESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDIC 68
Query: 260 GKHIRHKQTFDDHMNMH 276
G+ T H +H
Sbjct: 69 GRKFATLHTRTRHTKIH 85
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 226 CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
C E C + FS + L H H Q F+C IC ++ + + + H+ H+G+ + C
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACD 66
Query: 286 YCEKSFLYKKSLKHHLFVH 304
C + F + H +H
Sbjct: 67 ICGRKFATLHTRTRHTKIH 85
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 165 ENKFKC--QFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLK 222
E + C + C F Q+ H+ +H K F+C +C F +Q SL H+ H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIR-THTG 59
Query: 223 LKPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP C++CG+ F+ T H+ H Q
Sbjct: 60 EKPFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 367 ERPFQC--NDCGSTFRLKRHLNSHINRLH--KLKLNCVHCQAIFTNKQRLNYHILTKHSG 422
ERP+ C C F K +L++HI R+H + C C F+ + LN HI T H+G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQQASLNAHIRT-HTG 59
Query: 423 PNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRN 455
K + C+ C +F T RH K+H + ++
Sbjct: 60 E--KPFACDICGRKFATLHTRTRHTKIHLRQKD 90
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 427 AWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKICTT--- 483
A E CD RF NL H+++H + C C + + ++ L H + T
Sbjct: 6 ACPVESCDRRFSQKTNLDTHIRIHTGQKPF---QCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 484 -TCKSCGKRYSSIYVLRNHVK 503
C CG+++++++ H K
Sbjct: 63 FACDICGRKFATLHTRTRHTK 83
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 282 YTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSHSS--IFQ 337
Y C C++ F K +L H+ +H+ + +C +C R + H R+H+ F
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 338 CRICDKILSNIQGIRRHMENMHNSDKD 364
C IC + + + RH + +H KD
Sbjct: 65 CDICGRKFATLHTRTRHTK-IHLRQKD 90
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLKL 223
G+ F+C+ C F Q+ H+ H K F C++C KF + +H + +HL+
Sbjct: 31 GQKPFQCRICMRNFSQQASLNAHIR-THTGEKPFACDICGRKFATLHTRTRHTK-IHLRQ 88
Query: 224 K 224
K
Sbjct: 89 K 89
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 200 EVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPIC 259
E C +F ++ +L H+ +H KP +C +C ++FS ++ L H TH + F C IC
Sbjct: 10 ESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDIC 68
Query: 260 GKHIRHKQTFDDHMNMH 276
G+ T D H +H
Sbjct: 69 GRKFATLHTRDRHTKIH 85
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 254 FKCPI--CGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSK 311
+ CP+ C + K D H+ +H+G + C C ++F L H+ H+ E
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 312 CSVCDRLYKSDYLRRKHERSH 332
C +C R + + + R +H + H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%)
Query: 226 CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
C E C + FS + L H H Q F+C IC ++ + H+ H+G+ + C
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACD 66
Query: 286 YCEKSFLYKKSLKHHLFVH 304
C + F + H +H
Sbjct: 67 ICGRKFATLHTRDRHTKIH 85
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 165 ENKFKC--QFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLK 222
E + C + C F Q+ H+ +H K F+C +C F + L +H+ H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIR-THTG 59
Query: 223 LKPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP C++CG+ F+ T H+ H Q
Sbjct: 60 EKPFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 367 ERPFQC--NDCGSTFRLKRHLNSHINRLHKLK--LNCVHCQAIFTNKQRLNYHILTKHSG 422
ERP+ C C F K +L++HI R+H + C C F+ LN HI T H+G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQHTGLNQHIRT-HTG 59
Query: 423 PNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRN 455
K + C+ C +F T RH K+H + ++
Sbjct: 60 E--KPFACDICGRKFATLHTRDRHTKIHLRQKD 90
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 427 AWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKICTT--- 483
A E CD RF NL H+++H + C C + + + L +H + T
Sbjct: 6 ACPVESCDRRFSQKTNLDTHIRIHTGQKPF---QCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 484 -TCKSCGKRYSSIYVLRNHVK 503
C CG+++++++ H K
Sbjct: 63 FACDICGRKFATLHTRDRHTK 83
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 282 YTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSHSS--IFQ 337
Y C C++ F K +L H+ +H+ + +C +C R + +H R+H+ F
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 338 CRICDKILSNIQGIRRHMENMHNSDKD 364
C IC + + + RH + +H KD
Sbjct: 65 CDICGRKFATLHTRDRHTK-IHLRQKD 90
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLKL 223
G+ F+C+ C F Q +H+ H K F C++C KF + +H + +HL+
Sbjct: 31 GQKPFQCRICMRNFSQHTGLNQHIR-THTGEKPFACDICGRKFATLHTRDRHTK-IHLRQ 88
Query: 224 K 224
K
Sbjct: 89 K 89
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 228 CEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDV--KYTCT 285
CE+CGK F + L H +H+ + + CP+CG + K H+ H G V Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 286 YCEKSFLYKKSLKHHL 301
C K F L H+
Sbjct: 70 SCGKGFSRPDHLNGHI 85
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 331 SHSSIFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTF----RLKRHLN 386
S SS C IC KI ++ + RH + + E+P+ C CG F R+ H+
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLS------HSGEKPYSCPVCGLRFKRKDRMSYHVR 56
Query: 387 SHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPN 424
SH + K + C C F+ LN HI HSGP+
Sbjct: 57 SHDGSVGKPYI-CQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 312 CSVCDRLYKSDYLRRKHERSHSS--IFQCRICDKILSNIQGIRRHMENMHNSDKDNTERP 369
C +C ++++ Y +H+ SHS + C +C + H+ S + +P
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR----SHDGSVGKP 65
Query: 370 FQCNDCGSTFRLKRHLNSHINRLH 393
+ C CG F HLN HI ++H
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVH 89
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 397 LNCVHCQAIFTNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRNM 456
+ C C IF + LN H L+ HSG K + C C +RF + H++ H+ +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLS-HSGE--KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 457 LDSSCNECGKQYKWESFLQKHKK 479
C CGK + L H K
Sbjct: 65 -PYICQSCGKGFSRPDHLNGHIK 86
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 162 SFGENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHL 221
S G + C+ C F +H H K + C VC ++F R+ + HV +
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 222 KL-KPCKCEVCGKSFSNNSTLKVH 244
+ KP C+ CGK FS L H
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGH 84
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 199 CEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTH-ADQGR-FKC 256
CE+C F L +H + H KP C VCG F + H +H G+ + C
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 257 PICGKHIRHKQTFDDHM-NMHSG 278
CGK + H+ +HSG
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSG 91
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHVNGVHLKI-KRFKCEVCPMKFHRQVSLKKHVEAVH 220
GE + C C + F+++ + HV + K + C+ C F R L H++ VH
Sbjct: 32 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 200 EVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPIC 259
E C +F R L +H+ +H KP +C +C ++FS + L H TH + F C IC
Sbjct: 10 ESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 260 GKHIRHKQTFDDHMNMH 276
G+ H +H
Sbjct: 69 GRKFARSDERKRHTKIH 85
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%)
Query: 226 CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
C E C + FS ++ L H H Q F+C IC ++ H+ H+G+ + C
Sbjct: 7 CPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 286 YCEKSFLYKKSLKHHLFVH 304
C + F K H +H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 165 ENKFKC--QFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLK 222
E + C + C F + +H+ +H K F+C +C F R L H+ H
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 223 LKPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP C++CG+ F+ + K H+ H Q
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 254 FKCPI--CGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSK 311
+ CP+ C + H+ +H+G + C C ++F L H+ H+ E
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 312 CSVCDRLYKSDYLRRKHERSH 332
C +C R + R++H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 367 ERPFQC--NDCGSTFRLKRHLNSHINRLH--KLKLNCVHCQAIFTNKQRLNYHILTKHSG 422
ERP+ C C F L HI R+H + C C F+ L HI T H+G
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG 59
Query: 423 PNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRN 455
K + C+ C +F + KRH K+H + ++
Sbjct: 60 --EKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 282 YTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLY-KSDYLRRKHERSHSS--IF 336
Y C C++ F L H+ +H+ + +C +C R + +SD+L H R+H+ F
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHL-TTHIRTHTGEKPF 63
Query: 337 QCRICDKILSNIQGIRRHMENMHNSDKD 364
C IC + + +RH + +H KD
Sbjct: 64 ACDICGRKFARSDERKRHTK-IHLRQKD 90
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 200 EVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPIC 259
E C +F R L +H+ +H KP +C +C ++FS + L H TH + F C IC
Sbjct: 10 ESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 260 GKHIRHKQTFDDHMNMH 276
G+ H +H
Sbjct: 69 GRKFARSDERKRHTKIH 85
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%)
Query: 226 CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
C E C + FS ++ L H H Q F+C IC ++ H+ H+G+ + C
Sbjct: 7 CPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 286 YCEKSFLYKKSLKHHLFVH 304
C + F K H +H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 165 ENKFKC--QFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLK 222
E + C + C F + + +H+ +H K F+C +C F R L H+ H
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 223 LKPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP C++CG+ F+ + K H+ H Q
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 254 FKCPI--CGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSK 311
+ CP+ C + H+ +H+G + C C ++F L H+ H+ E
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 312 CSVCDRLYKSDYLRRKHERSH 332
C +C R + R++H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 367 ERPFQC--NDCGSTFRLKRHLNSHINRLH--KLKLNCVHCQAIFTNKQRLNYHILTKHSG 422
ERP+ C C F L HI R+H + C C F+ L HI T H+G
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG 59
Query: 423 PNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRN 455
K + C+ C +F + KRH K+H + ++
Sbjct: 60 E--KPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 282 YTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLY-KSDYLRRKHERSHSS--IF 336
Y C C++ F L H+ +H+ + +C +C R + +SD+L H R+H+ F
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHL-TTHIRTHTGEKPF 63
Query: 337 QCRICDKILSNIQGIRRHMENMHNSDKD 364
C IC + + +RH + +H KD
Sbjct: 64 ACDICGRKFARSDERKRHTK-IHLRQKD 90
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%)
Query: 226 CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
C E C + FS++S L H H Q F+C IC ++ H+ H+G+ + C
Sbjct: 7 CPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 286 YCEKSFLYKKSLKHHLFVH 304
C + F K H +H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 200 EVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPIC 259
E C +F +L +H+ +H KP +C +C ++FS + L H TH + F C IC
Sbjct: 10 ESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 260 GKHIRHKQTFDDHMNMH 276
G+ H +H
Sbjct: 69 GRKFARSDERKRHTKIH 85
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 165 ENKFKC--QFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLK 222
E + C + C F +H+ +H K F+C +C F R L H+ H
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 223 LKPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP C++CG+ F+ + K H+ H Q
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 254 FKCPI--CGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSK 311
+ CP+ C + H+ +H+G + C C ++F L H+ H+ E
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 312 CSVCDRLYKSDYLRRKHERSH 332
C +C R + R++H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 367 ERPFQC--NDCGSTFRLKRHLNSHINRLH--KLKLNCVHCQAIFTNKQRLNYHILTKHSG 422
ERP+ C C F +L HI R+H + C C F+ L HI T H+G
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG 59
Query: 423 PNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRN 455
K + C+ C +F + KRH K+H + ++
Sbjct: 60 --EKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 427 AWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKICTT--- 483
A E CD RF + NL RH+++H + C C + + L H + T
Sbjct: 6 ACPVESCDRRFSDSSNLTRHIRIHTGQKPF---QCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 484 -TCKSCGKRYSSIYVLRNHVK 503
C CG++++ + H K
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 282 YTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLY-KSDYLRRKHERSHSS--IF 336
Y C C++ F +L H+ +H+ + +C +C R + +SD+L H R+H+ F
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHL-TTHIRTHTGEKPF 63
Query: 337 QCRICDKILSNIQGIRRHMENMHNSDKD 364
C IC + + +RH + +H KD
Sbjct: 64 ACDICGRKFARSDERKRHTK-IHLRQKD 90
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 200 EVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPIC 259
E C +F R L +H+ +H KP +C +C ++FS + L H TH + F C IC
Sbjct: 10 ESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 260 GKHIRHKQTFDDHMNMH 276
G+ H +H
Sbjct: 69 GRKFARSDERKRHTKIH 85
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%)
Query: 226 CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
C E C + FS + L H H Q F+C IC ++ H+ H+G+ + C
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 286 YCEKSFLYKKSLKHHLFVH 304
C + F K H +H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 165 ENKFKC--QFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLK 222
E + C + C F + + +H+ +H K F+C +C F R L H+ H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 223 LKPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP C++CG+ F+ + K H+ H Q
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 254 FKCPI--CGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSK 311
+ CP+ C + H+ +H+G + C C ++F L H+ H+ E
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 312 CSVCDRLYKSDYLRRKHERSH 332
C +C R + R++H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 367 ERPFQC--NDCGSTFRLKRHLNSHINRLH--KLKLNCVHCQAIFTNKQRLNYHILTKHSG 422
ERP+ C C F L HI R+H + C C F+ L HI T H+G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG 59
Query: 423 PNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRN 455
K + C+ C +F + KRH K+H + ++
Sbjct: 60 E--KPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 282 YTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLY-KSDYLRRKHERSHSS--IF 336
Y C C++ F L H+ +H+ + +C +C R + +SD+L H R+H+ F
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL-TTHIRTHTGEKPF 63
Query: 337 QCRICDKILSNIQGIRRHMENMHNSDKD 364
C IC + + +RH + +H KD
Sbjct: 64 ACDICGRKFARSDERKRHTK-IHLRQKD 90
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 200 EVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPIC 259
E C +F R L +H+ +H KP +C +C ++FS + L H TH + F C IC
Sbjct: 9 ESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 67
Query: 260 GKHIRHKQTFDDHMNMH 276
G+ H +H
Sbjct: 68 GRKFARSDERKRHTKIH 84
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%)
Query: 226 CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
C E C + FS + L H H Q F+C IC ++ H+ H+G+ + C
Sbjct: 6 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 65
Query: 286 YCEKSFLYKKSLKHHLFVH 304
C + F K H +H
Sbjct: 66 ICGRKFARSDERKRHTKIH 84
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 165 ENKFKC--QFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLK 222
E + C + C F + + +H+ +H K F+C +C F R L H+ H
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 58
Query: 223 LKPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP C++CG+ F+ + K H+ H Q
Sbjct: 59 EKPFACDICGRKFARSDERKRHTKIHLRQ 87
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 254 FKCPI--CGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSK 311
+ CP+ C + H+ +H+G + C C ++F L H+ H+ E
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 312 CSVCDRLYKSDYLRRKHERSH 332
C +C R + R++H + H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 367 ERPFQC--NDCGSTFRLKRHLNSHINRLH--KLKLNCVHCQAIFTNKQRLNYHILTKHSG 422
ERP+ C C F L HI R+H + C C F+ L HI T H+G
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG 58
Query: 423 PNYKAWKCEKCDMRFVTNKNLKRHMKVH 450
K + C+ C +F + KRH K+H
Sbjct: 59 --EKPFACDICGRKFARSDERKRHTKIH 84
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 315 CDRLY-KSDYLRRKHERSHSS--IFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQ 371
CDR + +SD L R H R H+ FQCRIC + S + H+ E+PF
Sbjct: 11 CDRRFSRSDELTR-HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH------TGEKPFA 63
Query: 372 CNDCGSTF----RLKRHLNSHI 389
C+ CG F KRH H+
Sbjct: 64 CDICGRKFARSDERKRHTKIHL 85
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 282 YTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLY-KSDYLRRKHERSHSS--IF 336
Y C C++ F L H+ +H+ + +C +C R + +SD+L H R+H+ F
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL-TTHIRTHTGEKPF 62
Query: 337 QCRICDKILSNIQGIRRH 354
C IC + + +RH
Sbjct: 63 ACDICGRKFARSDERKRH 80
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 200 EVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPIC 259
E C +F + SL +H+ +H KP +C +C ++FS + L H TH + F C IC
Sbjct: 10 ESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 260 GKHIRHKQTFDDHMNMH 276
G+ H +H
Sbjct: 69 GRKFARSDERKRHTKIH 85
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%)
Query: 226 CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
C E C + FS + +L H H Q F+C IC ++ H+ H+G+ + C
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 286 YCEKSFLYKKSLKHHLFVH 304
C + F K H +H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 165 ENKFKC--QFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLK 222
E + C + C F Q G +H+ +H K F+C +C F R L H+ H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 223 LKPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP C++CG+ F+ + K H+ H Q
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 254 FKCPI--CGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSK 311
+ CP+ C + + H+ +H+G + C C ++F L H+ H+ E
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 312 CSVCDRLYKSDYLRRKHERSH 332
C +C R + R++H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 367 ERPFQC--NDCGSTFRLKRHLNSHINRLH--KLKLNCVHCQAIFTNKQRLNYHILTKHSG 422
ERP+ C C F L HI R+H + C C F+ L HI T H+G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG 59
Query: 423 PNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRN 455
K + C+ C +F + KRH K+H + ++
Sbjct: 60 --EKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 282 YTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLY-KSDYLRRKHERSHSS--IF 336
Y C C++ F SL H+ +H+ + +C +C R + +SD+L H R+H+ F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHL-TTHIRTHTGEKPF 63
Query: 337 QCRICDKILSNIQGIRRHMENMHNSDKD 364
C IC + + +RH + +H KD
Sbjct: 64 ACDICGRKFARSDERKRHTK-IHLRQKD 90
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 200 EVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPIC 259
E C +F R L +H+ +H KP +C +C ++FS + L H TH + F C IC
Sbjct: 10 ESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 260 GK 261
G+
Sbjct: 69 GR 70
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 220 HLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGD 279
H + C E C + FS + L H H Q F+C IC ++ H+ H+G+
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 280 VKYTCTYCEKSFLYKKSLKHHLFVH 304
+ C C + F K H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 254 FKCPI--CGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSK 311
+ CP+ C + H+ +H+G + C C ++F L H+ H+ E
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 312 CSVCDRLYKSDYLRRKHERSH 332
C +C R + R++H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 367 ERPFQC--NDCGSTFRLKRHLNSHINRLH--KLKLNCVHCQAIFTNKQRLNYHILTKHSG 422
ERP+ C C F L HI R+H + C C F+ L HI T H+G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG 59
Query: 423 PNYKAWKCEKCDMRFVTNKNLKRHMKVH 450
K + C+ C +F + KRH K+H
Sbjct: 60 E--KPFACDICGRKFARSDERKRHTKIH 85
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 131 PSEKTDVKQLRLDKMKSFTKKLHTRKYNDKFSFGENKFKCQFCPMWFEQRGKRRKHVNGV 190
P E D + R D++ + +HT G+ F+C+ C F + H+
Sbjct: 8 PVESCDRRFSRSDELTRHIR-IHT---------GQKPFQCRICMRNFSRSDHLTTHIR-T 56
Query: 191 HLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLK 222
H K F C++C KF R K+H + +HL+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTK-IHLR 87
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 282 YTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLY-KSDYLRRKHERSHSS--IF 336
Y C C++ F L H+ +H+ + +C +C R + +SD+L H R+H+ F
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL-TTHIRTHTGEKPF 63
Query: 337 QCRICDKILSNIQGIRRH 354
C IC + + +RH
Sbjct: 64 ACDICGRKFARSDERKRH 81
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 22/173 (12%)
Query: 315 CDRLYKSDYLRRKHERSHSS--IFQCR--ICDKILSNIQGIRRHMENMHNSDKDNTERPF 370
C Y ++ + H H+ F C+ C+K +++ + RH S E+ F
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH------SLTHTGEKNF 73
Query: 371 QCND--CGSTFRLKRHLNSHINRLHKLKLNCVH------CQAIFTNKQRLNYHILTKHSG 422
C+ C F K ++ H NR H +K+ CV+ C F +L H +
Sbjct: 74 TCDSDGCDLRFTTKANMKKHFNRFHNIKI-CVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Query: 423 PNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQ 475
Y+ E CD RF LKRH KVH D SC+ GK W +L+
Sbjct: 133 LPYECPH-EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKT--WTLYLK 182
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 164 GENKFKC--QFCPMWFEQRGKRRKHVNGVHLKIKRFKCEV--CPMKFHRQVSLKKHVEAV 219
GE F C + C F +H + H K F C+ C ++F + ++KKH
Sbjct: 39 GEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Query: 220 H---LKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCP--ICGKHIRHKQTFDDHMN 274
H + + C E CGK+F ++ LKVH +H Q ++CP C K H
Sbjct: 98 HNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 157
Query: 275 MHSG 278
+H+G
Sbjct: 158 VHAG 161
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 191 HLKIKRFKCEV--CPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTH 248
H K ++C+ C +F R LK+H + H +KP +C+ C + FS + LK H+ TH
Sbjct: 31 HTGEKPYQCDFKDCERRFSRSDQLKRH-QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
Query: 249 ADQGRFKC--PICGKHIRHKQTFDDHMNMH 276
+ F C P C K H NMH
Sbjct: 90 TGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 220 HLKLKPCKCEV--CGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHS 277
H KP +C+ C + FS + LK H H F+C C + H H+
Sbjct: 31 HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHT 90
Query: 278 GDVKYTCTY--CEKSFLYKKSLKHHLFVH 304
G+ ++C + C+K F L H +H
Sbjct: 91 GEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 257 PICGKHIRHKQTFDDHMNMHSGDVKYTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSV 314
P C K H H+G+ Y C + CE+ F LK H H+ +C
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT 71
Query: 315 CDRLY-KSDYLRRKHERSHSS--IFQCRI--CDKILSNIQGIRRHMENMH 359
C R + +SD+L + H R+H+ F CR C K + + RH NMH
Sbjct: 72 CQRKFSRSDHL-KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH-HNMH 119
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 226 CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPI--CGKHIRHKQTFDDHMNMHSGDVKYT 283
C C K + S L++HS H + ++C C + H H+G +
Sbjct: 9 CAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ 68
Query: 284 CTYCEKSFLYKKSLKHHLFVHSSE--FTSKCSVCDRLY-KSDYLRRKH 328
C C++ F LK H H+ E F+ + C + + +SD L R H
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH 116
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 360 NSDKDNTERPFQCN--DCGSTFRLKRHLNSHINRLHKLK-LNCVHCQAIFTNKQRLNYHI 416
+S K E+P+QC+ DC F L H R +K C CQ F+ L H
Sbjct: 27 HSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT 86
Query: 417 LTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVH 450
T H+G + + C +F + L RH +H
Sbjct: 87 RT-HTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 231 CGKSFSNNSTLKVHSTTHADQGRFK---------CPICGKHIRHKQTFDDHMNMHSGDVK 281
C ++FS L H T G + CP GK + K +H+ +H+G+
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 282 YTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSV--CDRLYKSDYLRRKHERSHSS 334
+ C + C K F ++LK H H+ E KC CDR + + R+KH H+S
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 341 CDKILSNIQGIRRH--MENMHNSDKDNTERPFQ-CNDCGSTFRLKRHLNSHINRLH---- 393
CD+ S + + H ME++ +++N ++ C G +F+ K L +HI R+H
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-RVHTGEK 89
Query: 394 KLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYKAWKCE--KCDMRFVTNKNLKRHMKVHE 451
C IF + L H T H+G K +KCE CD RF + + K+HM VH
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRT-HTG--EKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Query: 452 KNRNMLDSS 460
+++ S
Sbjct: 147 SDKSGPSSG 155
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 227 KCEVCGKSFSNNSTLKVHSTTHADQGRFKCPI--CGKHIRHKQTFDDHMNMHSGDVKYTC 284
+C GKSF L H H + F CP CGK + H H+G+ + C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 285 TY--CEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ C++ F K H+ VH+S+ + S
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 185 KHVNGVHLKIKRFKCEVCPMK---FHRQVSLKKHVEAVHLKLKPCKCEV--CGKSFSNNS 239
+HV G E CP + F + L H+ VH KP C CGK F+ +
Sbjct: 48 EHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSE 106
Query: 240 TLKVHSTTHADQGRFKCPICGKHIRHKQTFD--DHMNMHSGD 279
LK+H TH + FKC G R + D HM++H+ D
Sbjct: 107 NLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 227 KCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSG 278
KC+ CGKSFS++S L H TH + +KC CGK + H +H+G
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%)
Query: 253 RFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTS 310
R+KC CGK H H H+G+ Y C C K+F+ + L H VH+ S
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQG 252
+R+KC+ C F L KH H KP KC+ CGK+F S L H H G
Sbjct: 17 RRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKICTTTC 485
+ +KC++C F + +L +H + H + C+ECGK + S L H ++ T +
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPY---KCDECGKAFIQRSHLIGHHRVHTGSG 73
Query: 486 KSCG 489
S G
Sbjct: 74 PSSG 77
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 336 FQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLH 393
++C C K S+ + +H E+P++C++CG F + HL H +R+H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTH------TGEKPYKCDECGKAFIQRSHLIGH-HRVH 69
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 394 KLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVH 450
+ + C C F++ L+ H T H+G K +KC++C F+ +L H +VH
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRT-HTGE--KPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 281 KYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLY 319
+Y C C KSF + L H H+ E KC C + +
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGD 279
KP KC+ C SF L H T H + ++C ICG H +HSG+
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
K +KC+ C F + +L H + VH KP +C +CG F+ + LK H+ H+ +
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 279 DVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSHSS 334
D Y C C+ SF YK +L H VH+ E +C++C + + H R HS
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 254 FKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSE 307
+KC C R+K H +H+G+ Y C C F +LK H +HS E
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKI 480
K +KC++C F NL H VH + CN CG Q+ + L+ H +I
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPY---RCNICGAQFNRPANLKTHTRI 67
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 399 CVHCQAIFTNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVH 450
C CQA F K L H T H+G K ++C C +F NLK H ++H
Sbjct: 20 CDRCQASFRYKGNLASH-KTVHTG--EKPYRCNICGAQFNRPANLKTHTRIH 68
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 17/152 (11%)
Query: 226 CKCEVCGKSFSNNSTLKVHSTT---HADQGRFKCPICG-----KHIRHKQTFDDHMNMHS 277
C+ + C + F + L H + H ++ F C G + + + HM H+
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 278 GDVKYTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKC--SVCDRLYKSDYLRRKHE-RSH 332
G+ + CT+ C KS+ ++LK HL H+ E C C + + + R KH+ R+H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 333 SS--IFQCRI--CDKILSNIQGIRRHMENMHN 360
S+ + C++ C K ++ +R+H++ +H
Sbjct: 124 SNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 19/145 (13%)
Query: 173 CPMWFEQRGKRRKHVNGVHLKIKR--FKC-------EVCPMKFHRQVSLKKHVEAVHLKL 223
C F+ + + H+N H+ +R F C E+ P K Q L H+ H
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKA--QYMLVVHMRR-HTGE 65
Query: 224 KPCKC--EVCGKSFSNNSTLKVHSTTHADQGRFKC--PICGKHIRHKQTFDDHMN-MHSG 278
KP KC E C KS+S LK H +H + + C C K + H N HS
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Query: 279 DVKYTCTY--CEKSFLYKKSLKHHL 301
+ Y C C K + SL+ H+
Sbjct: 126 EKPYVCKLPGCTKRYTDPSSLRKHV 150
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 164 GENKFKCQF--CPMWFEQRGKRRKHVNGVHLKIKRFKCEV--CPMKFHRQVSLKKHVEAV 219
GE + C+ C F R KH N H K + C++ C ++ SL+KHV+ V
Sbjct: 94 GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Query: 220 H 220
H
Sbjct: 154 H 154
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 255 KCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHL 301
+C CGK R + H+ H+G+ Y C +CE + K SL++HL
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHL 52
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 227 KCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMH 276
+C CGK F +N L +H TH + +KC C K + H+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 311 KCSVCDRLYKSDYLRRKHERSHSS--IFQCRICDKILSNIQGIRRHMENMH 359
+CS C + ++S+Y H R+H+ ++C C+ + +R H+E H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 399 CVHCQAIFTNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVHEK 452
C +C F + LN H+ T H+G K +KCE C+ +L+ H++ H K
Sbjct: 7 CSYCGKFFRSNYYLNIHLRT-HTGE--KPYKCEFCEYAAAQKTSLRYHLERHHK 57
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 225 PCKCEVCGKSFSNNSTLKVHS-TTHADQGRFKCP--ICGKHIRHKQTFDDHMNMHSGDVK 281
PC CG+ FSN L H H Q F CP CGK K+ +HM +HS
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Query: 282 YTCTYCEKS 290
Y C + S
Sbjct: 69 YICEFSGPS 77
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 402 CQAIFTNKQRLNYHILTKHSGPNYKAWKCEK--CDMRFVTNKNLKRHMKVHEKNRNML 457
C IF+N+Q LN+H +H + K++ C + C F K+LK HMK+H R+ +
Sbjct: 15 CGRIFSNRQYLNHHKKYQHI--HQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYI 70
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 223 LKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGK 261
+KP +C +C ++FS + L H TH + F C ICG+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 39
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 194 IKRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVH 244
+K F+C +C F R L H+ H KP C++CG+ F+ + K H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 50
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 254 FKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHH 300
F+C IC ++ H+ H+G+ + C C + F K H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 336 FQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTF 379
FQCRIC + S + H+ E+PF C+ CG F
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT------HTGEKPFACDICGRKF 41
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHS 277
KP C CGK+FS +S L H H + +KC CGK +H +H+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHAD 250
K + C C F R L +H + VH KP KC CGK+FS NS L H H
Sbjct: 13 KPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 254 FKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTS 310
+ C CGK H +H+G+ Y C C K+F L +H +H+S +S
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKICTT 483
K + C +C F + L +H +VH + C ECGK + S L H++I T+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPY---KCLECGKAFSQNSGLINHQRIHTS 67
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 281 KYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSHSS 334
Y C C K+F L H VH+ E KC C + + + H+R H+S
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 460 SCNECGKQYKWESFLQKHKKICTTT----CKSCGKRYSSIYVLRNH 501
C ECGK + S L +H+++ T C CGK +S L NH
Sbjct: 16 GCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 398 NCVHCQAIFTNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVH 450
CV C F+ L H H+G K +KC +C F N L H ++H
Sbjct: 16 GCVECGKAFSRSSILVQHQRV-HTGE--KPYKCLECGKAFSQNSGLINHQRIH 65
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 187 VNGVHLKIKRFKCEV--CPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVH 244
+N V K++ + C V C +F R L +H+ +H KP +C +C ++FS + L H
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH 68
Query: 245 STTHA 249
TH
Sbjct: 69 IRTHT 73
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 222 KLKP--CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHS 277
K++P C E C + FS + L H H Q F+C IC ++ H+ H+
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 417 LTKHSGPNYKAWKC--EKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFL 474
L + P + + C E CD RF + L RH+++H + C C + + L
Sbjct: 9 LLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPF---QCRICMRNFSRSDHL 65
Query: 475 QKH 477
H
Sbjct: 66 TTH 68
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 287 CEKSFLYKKSLKHHLFVHSSEFTSKCSV--CD-RLYKSDYLRRKHERSHSSI--FQCRIC 341
C K + LK HL H+ E KC+ CD R +SD L R H R H+ FQC +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTR-HYRKHTGAKPFQCGVC 81
Query: 342 DKILSNIQGIRRHMENMHN 360
++ S + HM+ N
Sbjct: 82 NRSFSRSDHLALHMKRHQN 100
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 190 VHLKIKRFKC--EVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTT 247
H K +KC E C +F R L +H H KP +C VC +SFS + L +H
Sbjct: 39 THTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Query: 248 H 248
H
Sbjct: 98 H 98
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 257 PICGKHIRHKQTFDDHMNMHSGDVKYTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSV 314
P C K H+ H+G+ Y CT+ C+ F L H H+ +C V
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV 80
Query: 315 CDRLY-KSDYL 324
C+R + +SD+L
Sbjct: 81 CNRSFSRSDHL 91
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 226 CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQT--FDDHMNMHSGDVKYT 283
C C K ++ +S LK H TH + +KC G R ++ H H+G +
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 284 CTYCEKSFLYKKSLKHHLFVH 304
C C +SF L H+ H
Sbjct: 78 CGVCNRSFSRSDHLALHMKRH 98
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 402 CQAIFTNKQRLNYHILTKHSGPNYKAWKC--EKCDMRFVTNKNLKRHMKVHEKNRNMLDS 459
C ++T L H+ T H+G K +KC E CD RF + L RH + H +
Sbjct: 23 CTKVYTKSSHLKAHLRT-HTGE--KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCG 79
Query: 460 SCN 462
CN
Sbjct: 80 VCN 82
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 202 CPMKFHRQVSLKKHVEAVHLKLKPCKC--EVCGKSFSNNSTLKVHSTTHADQGRFKCPIC 259
C + + LK H+ H KP KC E C F+ + L H H F+C +C
Sbjct: 23 CTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 260 GKHIRHKQTFDDHMNMH 276
+ HM H
Sbjct: 82 NRSFSRSDHLALHMKRH 98
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 197 FKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHS 245
F CEVC F RQ LK+H + H KP C +C ++F+ L H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 228 CEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMN-MHSGDV 280
CEVC ++F+ LK H +H ++ + C +C + + H +HSG++
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 282 YTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLY-KSDYLRRKHERSHSS 334
+ C C ++F ++ LK H H++E C +C+R + + D L R ++ HS
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 312 CSVCDRLYKSDYLRRKHERSHSS--IFQCRICDKILSNIQGIRRHMENMHNSD 362
C VC R + ++H RSH++ + C +C++ + + RH + +H+ +
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 336 FQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLHKL 395
F C +C + + + ++RH + N E+P+ C C F + L H ++H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN------EKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Query: 396 KLN 398
L
Sbjct: 57 NLG 59
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMH 276
+P C CGK++ + S L H H CP CGK R + + H+ +H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 366 TERPFQCNDCGSTFR----LKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHS 421
+ERPF CN CG T+R L RH +H+ + +C C F ++ +N H+ +
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPR---SCPECGKCFRDQSEVNRHLKVHQN 57
Query: 422 GP 423
P
Sbjct: 58 KP 59
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 197 FKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
F C C + L +H A HL +P C CGK F + S + H H ++
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRA-HLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 254 FKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVH 304
F C CGK R H H G +C C K F + + HL VH
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 336 FQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHI 389
F C C K + G+ RH RP C +CG FR + +N H+
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGY------RPRSCPECGKCFRDQSEVNRHL 52
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKI 480
+ + C C + L RH + H R SC ECGK ++ +S + +H K+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYR---PRSCPECGKCFRDQSEVNRHLKV 54
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 226 CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPI--CGKHIRHKQTFDDHMNMHSGDVKYT 283
C CGK+++ +S LK H TH + + C CG H H+G +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 284 CTYCEKSFLYKKSLKHHLFVH 304
C C+++F L H+ H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 280 VKYTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSV--CD-RLYKSDYLRRKHERSHSS 334
+TC Y C K++ LK HL H+ E C C + +SD L R H R H+
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTR-HYRKHTG 62
Query: 335 --IFQCRICDKILSNIQGIRRHME 356
FQC+ CD+ S + HM+
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMK 86
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 375 CGSTFRLKRHLNSHINRLH----KLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYKAWKC 430
CG T+ HL +H+ R H + C F L H KH+G ++ ++C
Sbjct: 13 CGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTG--HRPFQC 68
Query: 431 EKCDMRFVTNKNLKRHMKVH 450
+KCD F + +L HMK H
Sbjct: 69 QKCDRAFSRSDHLALHMKRH 88
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 190 VHLKIKRFKCEV--CPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTT 247
H K + C+ C KF R L +H H +P +C+ C ++FS + L +H
Sbjct: 29 THTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Query: 248 H 248
H
Sbjct: 88 H 88
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
ERPF+CN+CG F + HL H+ RLH
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHL-RLH 35
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 226 CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPI--CGKHIRHKQTFDDHMNMHSGDVKYT 283
C CGK+++ +S LK H TH + + C CG H H+G +
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 284 CTYCEKSFLYKKSLKHHL 301
C C+++F L H+
Sbjct: 69 CQKCDRAFSRSDHLALHM 86
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 280 VKYTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSV--CD-RLYKSDYLRRKHERSHSS 334
+TC Y C K++ LK HL H+ E C C + +SD L R H R H+
Sbjct: 5 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTR-HYRKHTG 63
Query: 335 --IFQCRICDKILSNIQGIRRHME 356
FQC+ CD+ S + HM+
Sbjct: 64 HRPFQCQKCDRAFSRSDHLALHMK 87
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 375 CGSTFRLKRHLNSHINRLH----KLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYKAWKC 430
CG T+ HL +H+ R H + C F L H KH+G ++ ++C
Sbjct: 14 CGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTG--HRPFQC 69
Query: 431 EKCDMRFVTNKNLKRHMKVH 450
+KCD F + +L HMK H
Sbjct: 70 QKCDRAFSRSDHLALHMKRH 89
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 190 VHLKIKRFKCEV--CPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTT 247
H K + C+ C KF R L +H H +P +C+ C ++FS + L +H
Sbjct: 30 THTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKCDRAFSRSDHLALHMKR 88
Query: 248 H 248
H
Sbjct: 89 H 89
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 374 DCGSTF----RLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYKAWK 429
DCG+ + +L+ HL+ H C+ FT+ L H LT H+G
Sbjct: 10 DCGAAYNKNWKLQAHLSKHTGE-KPFPCKEEGCEKGFTSLHHLTRHSLT-HTGEKNFTCD 67
Query: 430 CEKCDMRFVTNKNLKRHM 447
+ CD+RF T N+K+H
Sbjct: 68 SDGCDLRFTTKANMKKHF 85
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 195 KRFKCEV--CPMKFHRQVSLKKHVEA-VHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KR+ C C +++ L+ H+ K PCK E C K F++ L HS TH +
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 252 GRFKCPICGKHIR 264
F C G +R
Sbjct: 62 KNFTCDSDGCDLR 74
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 253 RFKCPI--CGKHIRHKQTFDDHMNMHSGDVKYTC--TYCEKSFLYKKSLKHHLFVHSSE- 307
R+ C CG H++ H+G+ + C CEK F L H H+ E
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 308 -FTSKCSVCDRLYKSDYLRRKH 328
FT CD + + +KH
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKH 84
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 169 KCQFCPMW---FEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVH 220
+C CP+ F +G + +H+ +H + F C+ CP F+ L +H+ H
Sbjct: 27 ECHLCPVCGESFASKGAQERHLRLLH-AAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 256 CPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHL 301
CP+CG+ K + H+ + + C YC +F L H+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 312 CSVCDRLYKSDYLRRKHER--SHSSIFQCRICDKILSNIQGIRRHMENMHNSD 362
C VC + S + +H R + +F C+ C + G+ RH+ H S+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE 83
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 365 NTERPFQCNDCGSTFRLKRHLNSHINRLHK---LKLNCVHCQAIFTNKQRLNYHILTKH- 420
+ E+P++C C + F + HI + H K +C HC + K L H+ +H
Sbjct: 11 SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
Query: 421 -SGPN 424
SGP+
Sbjct: 71 YSGPS 75
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHVNGVHLK-IKRFKCEVCPMKFHRQVSLKKHVEAVHLK 222
GE ++C C F Q G + H+ H + + +F C C R+ L H+ H
Sbjct: 12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
Query: 223 LKP 225
P
Sbjct: 72 SGP 74
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 276 HSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSK--CSVCDRLY--KSD---YLRRKH 328
HSG+ Y C C F ++K H+ +E +K C CD + KSD +LR++H
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Query: 329 ERSHSS 334
S S
Sbjct: 70 SYSGPS 75
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 226 CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCP--ICGKHIRHKQTFDDHMNMHSG 278
C E CGK+F ++ LKVH +H Q ++CP C K H +H+G
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 431 EKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQ 475
E CD RF LKRH KVH D SC+ GK W +L+
Sbjct: 37 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGK--TWTLYLK 79
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 226 CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCP--ICGKHIRHKQTFDDHMNMHSG 278
C E CGK+F ++ LKVH +H Q ++CP C K H +H+G
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 431 EKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQ 475
E CD RF LKRH KVH D SC+ GK W +L+
Sbjct: 37 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKT--WTLYLK 79
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+PF+C +CG FR HL SH+ R+H
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHL-RIH 35
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHAD 250
KPCKC CGK+F S L +H TH D
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVD 37
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 32.7 bits (73), Expect = 0.45, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQG 252
KP +C+ CGKSFS +L VH H G
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTGSG 37
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 361 SDKDNTERPFQCNDCGSTFRLKRHLNSHINRLH 393
S + E+P+QC +CG +F + L H RLH
Sbjct: 2 SSGSSGEKPYQCKECGKSFSQRGSLAVH-ERLH 33
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P+ CN CG F L HLN H+ R+H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHL-RVH 35
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH-----KLKLNCVHCQAIFTNKQRLNYHI 416
E+P+ C+ C TFR K+ L+ H R H C C FT + + H
Sbjct: 13 EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 276 HSGDVKYTCTYCEKSFLYKKSLKHHL-FVHSSEFTSKCSVCDRLYKSDYLRRKHERSHS 333
H+G+ Y C++C+K+F K+ L H H F VC + K+ + RR H+
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKT-FTRRNTMARHA 67
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMK-VHEKNRNMLDSSCNECGKQYKWESFLQKHKKICT 482
K + C CD F + L H K H+ N C++CGK + + + +H C
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCA 71
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 194 IKRFKCEVCPMKFHRQVSLKKHVEAV-HLKLKPCKCEVCGKSFSNNST 240
I +F C +C M F VSLK+H+ H K+ C VC K F++ +
Sbjct: 72 ISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV----CPVCKKEFTSTDS 115
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.63, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP +C CGK+F NS L VH TH+ +
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KPC+C +CGK+F+ S+L H H +
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P+ CN+CG +F K HLN H R+H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRH-RRIH 35
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.82, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP KC CGK+F S+L +H TH+ +
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGE 38
Score = 28.9 bits (63), Expect = 7.5, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSH 388
E+P++CN+CG FR + L H
Sbjct: 10 EKPYKCNECGKAFRARSSLAIH 31
>pdb|2GQJ|A Chain A, Solution Structure Of The Two Zf-C2h2 Like
Domains(493-575) Of Human Zinc Finger Protein Kiaa1196
Length = 98
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 385 LNSHINRLHKLK--LNCVHCQAIFTNKQRLNYHILTKHSG 422
L H+ KL+ L C HC+ F +K LNYH + +HS
Sbjct: 41 LKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP +C VCGK+FS+ +L VH H+ +
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGK 38
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 254 FKCPICGKHIRHKQTFDDHMNMHSG 278
++C +CGK H+Q+ H +HSG
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSH 388
E PF+CN+CG TF HL+ H
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKH 31
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSS 460
K +KCE+C RF N L H +VH + SS
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP KCE CGK F+ NS L H H +
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGE 38
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 277 SGDVKYTCTYCEKSFLYKKSLKHHLFVHSSE 307
SG + +TC YC K F +K SL+ HL +H++E
Sbjct: 6 SGKI-FTCEYCNKVFKFKHSLQAHLRIHTNE 35
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP KC++CGKSF S L HS H +
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAE 38
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+PFQC +CG F HL+SH R+H
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSH-QRVH 35
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSS 460
K ++CE+C RF N +L H +VH + SS
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP +CE CGK F+ NS L H H +
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGE 38
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 254 FKCPICGKHIRHKQTFDDHMNMHSGD 279
+ C ICG RH QT H+ +H+G
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGS 37
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQG 252
KP CE+CG F + TLK H H G
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSG 38
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 429 KCEKCDMRFVTNKNLKRHMKVH 450
KC +C +F T+ NLKRH+++H
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIH 25
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP +C +CGKSF+ S L VH H +
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGE 38
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP C C K+FS+ S L VH THA++
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEE 36
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQG 252
KP +C+ CGK+FS +L VH H G
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 368 RPFQCNDCGSTFRLKRHLNSHINRLH 393
+P+ C CG F HLN HI ++H
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVH 36
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSH 388
E+P++CN+CG FR +L +H
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTH 31
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++CN+CG F HL +H R+H
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHW-RIH 35
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINR 391
ERP+ CN+CG F HL H+ R
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKR 34
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 227 KCEVCGKSFSNNSTLKVHSTTHADQG---RFKCPICGKHIRHKQTFDDH 272
+CE+CG + ++L H HA+ RF C CGK + H
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 254 FKCPICGKHIRHKQTFDDHMNMHSGDV---KYTCTYCEKSFLYKKSLKHH 300
+C ICG R K + + H H+ V ++ C +C K F S+ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP +C CGKSFS NS L VH H +
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGE 38
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSS 460
K WKC +CDM F +L+ H VH + SS
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++CN+CG F HL +H R+H
Sbjct: 10 EKPYKCNECGKVFTQNSHLANH-QRIH 35
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSH 388
E+P+ CN+CG TF K L++H
Sbjct: 10 EKPYGCNECGKTFSQKSILSAH 31
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP C CGK+FS S L H TH +
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGE 38
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP C CGK+FS+ S L +H TH+ +
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGE 38
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 361 SDKDNTERPFQCNDCGSTFRLKRHLNSH 388
S + E+P++C DCG F LK L H
Sbjct: 2 SSGSSGEKPYECTDCGKAFGLKSQLIIH 29
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP +C CGK+F S L +H TH +
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICG 260
KP KC CGK+F+ S L +H +H + R P G
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGE-RHSGPSSG 46
>pdb|3FLO|B Chain B, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|D Chain D, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|F Chain F, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|H Chain H, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
Length = 206
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 347 NIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIF 406
N+Q + + ++ KD C C F ++S+ R+ L C HC+ +F
Sbjct: 1 NLQPLETTITDVERF-KDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLF 59
Query: 407 TNKQRLNY--HILTKHSGPNYKAW-KCEKCDMRFVT 439
T Q + H + H Y W +C+ VT
Sbjct: 60 TPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVT 95
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHA 249
KP +C CGK+F S L VH THA
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHA 36
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 461 CNECGKQYKWESFLQKHKK 479
CNECGK + W+S L H++
Sbjct: 15 CNECGKAFIWKSLLIVHER 33
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSH 388
E+P++CN CG F ++ L +H
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTH 31
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP KC+VC KSF S+L VH H +
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGE 38
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 360 NSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLH 393
S + E+P+ CN+CG F K +L H R+H
Sbjct: 1 GSSGSSGEKPYGCNECGKDFSSKSYLIVH-QRIH 33
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 336 FQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLHKL 395
++C++C ++ ++I RH H + + + C C F K ++ +H+ +HK+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRN----VKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++CN+CG FR +L+ H R+H
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRH-QRIH 35
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK ++ S+L +H++I T
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHT 36
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSS 460
K +KC +C F N +L RH +VH + SS
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++CN+CG F HL H R+H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARH-RRVH 35
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSS 460
K +KCEKC + + NL H KVH R SS
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP KC+VCGK+F +S L H + H+ +
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGE 38
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSH 388
E+P++C CG FR+ HL H
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQH 31
>pdb|2LVH|A Chain A, Solution Structure Of The Zinc Finger Afv1p06 Protein From
The Hyperthermophilic Archaeal Virus Afv1
Length = 59
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 362 DKDNTERPFQCNDCGSTFRLKRHLNSHI 389
+ + ER +QC CG TFR K+ L H+
Sbjct: 3 EVSSMERVYQCLRCGLTFRTKKQLIRHL 30
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 366 TERPFQCNDCGSTFRLKRHLNSH 388
E+PF+C+ C +FR + LNSH
Sbjct: 9 AEKPFRCDTCDKSFRQRSALNSH 31
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP C+ CGK+F+ +S L +H H +
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
++PF+C CG +FR K +L +H R+H
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTH-QRIH 35
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 223 LKPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
+KP C CGK+F + S L +H TH +
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGE 36
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C++CG F HLN H R+H
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEH-RRIH 35
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP KC CGK FS S L VH H +
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGE 38
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 361 SDKDNTERPFQCNDCGSTFRLKRHLNSH 388
S + E+P+ CN+CG F K L H
Sbjct: 2 SSGSSGEKPYSCNECGKAFTFKSQLIVH 29
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 361 SDKDNTERPFQCNDCGSTFRLKRHLNSHINRLH 393
S + ++P+ CN+CG F LK L H R+H
Sbjct: 2 SSGSSGQKPYVCNECGKAFGLKSQLIIH-ERIH 33
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP KC CGKSF+ S L++H H +
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 223 LKPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
+KP C CGK+F + S L +H+ TH +
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSH 388
E+P++C +CG FR + +L +H
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTH 31
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+PF+C +CG ++ + HL H R+H
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQH-QRVH 35
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 361 SDKDNTERPFQCNDCGSTFRLKRHLNSH 388
S + E+P+ C+DCG F K L H
Sbjct: 2 SSGSSGEKPYVCSDCGKAFTFKSQLIVH 29
>pdb|2ELP|A Chain A, Solution Structure Of The 13th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 37
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 421 SGPNYKAWKCEKCDMRFVTN-KNLKRHMKVHE 451
SG + +A KC CD F+ N +L+RH+ HE
Sbjct: 3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHE 34
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 227 KCEVCGKSFSNNSTLKVHSTTHADQ 251
KC+VCGK FS +S L+ H H +
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTGE 38
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C+DCG +F K L+ H R+H
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVH-QRIH 35
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+PF+C +CG +F + L +H R+H
Sbjct: 10 EKPFECAECGKSFSISSQLATH-QRIH 35
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP +C CGKSFS +S L H H +
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGE 38
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 461 CNECGKQYKWESFLQKHKKI 480
C ECGK ++W S L KH+++
Sbjct: 15 CKECGKSFRWASCLLKHQRV 34
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSH 388
E+P++C++CG FR HL H
Sbjct: 10 EKPYKCHECGKVFRRNSHLARH 31
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 461 CNECGKQYKWESFLQKHKKI 480
CNECGK ++ S L KH++I
Sbjct: 13 CNECGKTFRQSSCLSKHQRI 32
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 360 NSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLH 393
S + ++P CN+CG TFR L+ H R+H
Sbjct: 1 GSSGSSGKKPLVCNECGKTFRQSSCLSKH-QRIH 33
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSH 388
E+P++CN+CG F HL H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARH 31
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 371 QCNDCGSTFRLKRHLNSHINRLH 393
QC++CG F LK HLN H R+H
Sbjct: 14 QCHECGRGFTLKSHLNQH-QRIH 35
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP KCE CGK F NS H +H+ +
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGE 38
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 28.5 bits (62), Expect = 8.3, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQG 252
KP KCE CG F + L+ H H G
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSG 38
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
ERP +CN+CG +F HL H R+H
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQH-QRIH 35
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 448 KVHEKNRNMLDSSCNECGKQYKWESFLQKHKKICTTTCKSCGKRY 492
+V E + +M C +C + Y W F++ K C+ CG Y
Sbjct: 113 RVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYY 157
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 253 RFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHL 301
++ C CG + H+ H+ Y CTYC SF K +L H+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KP KC CGK+F +NS+ H H Q
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQ 38
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 223 LKPCKCEVCGKSFSNNSTLKVHSTTH 248
+KP +C+ CG+SFS+ ++ H TH
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETH 26
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C +CG F K +L H R+H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQH-QRIH 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,718,841
Number of Sequences: 62578
Number of extensions: 656921
Number of successful extensions: 2823
Number of sequences better than 100.0: 170
Number of HSP's better than 100.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1571
Number of HSP's gapped (non-prelim): 1036
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)