RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2973
(514 letters)
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 36.4 bits (84), Expect = 0.007
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 194 IKRFKCEVCPMKFHRQVSLKKHVE-AVHLKLKPCKCEVCGKSFSNNSTLKVH 244
+ + C +C M F VSLK+H+ H K C VCGK F N + H
Sbjct: 71 VSPYVCPLCLMPFSSSVSLKQHIRYTEHSK----VCPVCGKEFRNTDSTLDH 118
Score = 29.5 bits (66), Expect = 1.6
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 225 PCKCEVCGKSFSNNSTLKVH--STTHADQGRFKCPICGKHIRHKQTFDDHM 273
P C +C FS++ +LK H T H+ CP+CGK R+ + DH+
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEHSK----VCPVCGKEFRNTDSTLDHV 119
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 37.4 bits (86), Expect = 0.016
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 20/72 (27%)
Query: 195 KRFKCEV--CPMKFHRQVSLKKHVEAVH------------------LKLKPCKCEVCGKS 234
K +KC V C K+ Q LK H+ H K KP +CEVC K
Sbjct: 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKR 407
Query: 235 FSNNSTLKVHST 246
+ N + LK H
Sbjct: 408 YKNLNGLKYHRK 419
Score = 30.5 bits (68), Expect = 2.2
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 224 KPCKCEV--CGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVK 281
KP KC V C K + N + LK H H Q + H+ + MN+ S K
Sbjct: 348 KPYKCPVEGCNKKYKNQNGLKYHML-HGHQNQ---------KLHENPSPEKMNIFSAKDK 397
Query: 282 -YTCTYCEKSFLYKKSLKHH 300
Y C C+K + LK+H
Sbjct: 398 PYRCEVCDKRYKNLNGLKYH 417
Score = 30.5 bits (68), Expect = 2.5
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 16/63 (25%)
Query: 402 CQAIFTNKQRLNYHILTKHSGP----------------NYKAWKCEKCDMRFVTNKNLKR 445
C + N+ L YH+L H K ++CE CD R+ LK
Sbjct: 357 CNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKY 416
Query: 446 HMK 448
H K
Sbjct: 417 HRK 419
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 29.6 bits (67), Expect = 0.21
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 429 KCEKCDMRFVTNKNLKRHMKVH 450
KC C F NLKRH++ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 28.9 bits (65), Expect = 0.39
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 227 KCEVCGKSFSNNSTLKVHSTTH 248
KC CGKSFS S LK H TH
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 25.4 bits (56), Expect = 6.2
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 255 KCPICGKHIRHKQTFDDHMNMH 276
KCP CGK K H+ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 28.2 bits (63), Expect = 0.64
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 428 WKCEKCDMRFVTNKNLKRHMKVH 450
++C +C F + L+ HM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 26.3 bits (58), Expect = 3.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 282 YTCTYCEKSFLYKKSLKHHLFVH 304
Y C C K F K +L+ H+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 4.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 254 FKCPICGKHIRHKQTFDDHMNMH 276
++CP CGK + K +HM H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 4.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 227 KCEVCGKSFSNNSTLKVHSTTH 248
+C CGK F + S L+ H TH
Sbjct: 2 RCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 31.5 bits (71), Expect = 1.2
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 375 CGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRL-NYHILTKH-----SGPNYKAW 428
CGS LK+H + + L C+ + F N+ RL L H +K
Sbjct: 163 CGSLKELKKHYKAQHGFV--LCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGH 220
Query: 429 -KCEKCDMRFVTNKNLKRHMKV-HEK 452
C C + F + L+RH ++ HE
Sbjct: 221 PLCIFCKIYFYDDDELRRHCRLRHEA 246
>gnl|CDD|144157 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate
binding domain. This family includes transketolase
enzymes EC:2.2.1.1. and also partially matches to
2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4.
Both these enzymes utilise thiamine pyrophosphate as a
cofactor, suggesting there may be common aspects in
their mechanism of catalysis.
Length = 333
Score = 30.8 bits (70), Expect = 1.8
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 17 VSDESQIQFAMQVPKKEE----ETLEDGLDQSTLENDRIIDTAHIKGETLKPNVIKVRIK 72
+ E++I F K+ E +E I+ A K E KP +I R
Sbjct: 187 IDGETEISFTEDTAKRFEAYGWHVIEVEDGHDVEAIAAAIEEA--KAEKDKPTLIICRTV 244
Query: 73 KKRGEPRKAN 82
G P K
Sbjct: 245 IGYGSPNKQG 254
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 27.0 bits (60), Expect = 2.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLY 293
HM H+G+ Y C C KSF
Sbjct: 5 HMRTHTGEKPYKCPVCGKSFSS 26
Score = 26.6 bits (59), Expect = 2.6
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 211 SLKKHVEAVHLKLKPCKCEVCGKSFSN 237
+L++H+ H KP KC VCGKSFS+
Sbjct: 1 NLRRHM-RTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 30.4 bits (68), Expect = 2.4
Identities = 32/203 (15%), Positives = 52/203 (25%), Gaps = 27/203 (13%)
Query: 193 KIKRFKCEVCPMKFHRQVSLKKHVEAVHLKLKP-----CKCEVCGKSFSNNSTLKVHSTT 247
K + C + F R L +H+ +V+ + C +CGK FS N LK H
Sbjct: 286 FSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILL 345
Query: 248 HADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSE 307
H K + + L + + +
Sbjct: 346 HTSISPAKEKLLNSSSKFSPLL---------------NNEPPQSLQQYKDLKNDKKSETL 390
Query: 308 FTSKCSVCDRLYKSDYLRRKHERSHSSIFQCRICDKILSNIQGIRRHMENMHNSDKDNTE 367
S R H + C K + + H +
Sbjct: 391 SNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKK------IHTNH 444
Query: 368 RPFQCNDCGSTFRLKRHLNSHIN 390
P C+ S R L++H
Sbjct: 445 APLLCSILKSFRRD-LDLSNHGK 466
>gnl|CDD|188750 cd09364, LIM1_LIMK, The first LIM domain of LIMK (LIM domain Kinase
). The first LIM domain of LIMK (LIM domain Kinase ):
LIMK protein family is comprised of two members LIMK1
and LIMK2. LIMK contains two LIM domains, a PDZ domain
and a kinase domain. LIMK is involved in the regulation
of actin polymerization and microtubule disassembly.
LIMK influences architecture of the actin cytoskeleton
by regulating the activity of the cofilin family
proteins cofilin1, cofilin2, and destrin. The mechanism
of the activation is to phosphorylates cofilin on serine
3 and inactivates its actin-severing activity, and
altering the rate of actin depolymerisation. LIMKs can
function in both cytoplasm and nucleus and are expressed
in all tissues. Both LIMK1 and LIMK2 can act in the
nucleus to suppress Rac/Cdc42-dependent cyclin D1
expression. However, LIMK1 and LIMk2 have different
cellular locations. While LIMK1 localizes mainly at
focal adhesions, LIMK2 is found in cytoplasmic punctae,
suggesting that they may have different cellular
functions. The LIM domains of LIMK have been shown to
play an important role in regulating kinase activity and
likely also contribute to LIMK function by acting as
sites of protein-to-protein interactions. All LIM
domains are 50-60 amino acids in size and share two
characteristic zinc finger motifs. The two zinc fingers
contain eight conserved residues, mostly cysteines and
histidines, which coordinately bond to two zinc atoms.
LIM domains function as adaptors or scaffolds to support
the assembly of multimeric protein complexes.
Length = 53
Score = 27.5 bits (61), Expect = 2.5
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 315 CDRLYKSDYLRRKHERSHSSIFQCRICDKILSN 347
++ S Y++ ++ H F+C +C LSN
Sbjct: 5 RGKILDSQYVQALNQDWHCDCFRCSVCSDSLSN 37
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 30.4 bits (68), Expect = 2.8
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 32 KEEETLEDGLDQSTLENDRIIDTAHIKGETLKPNV-IKVRIKKKRGEPRKANP 83
KE LE G L+ +RIID I +LK IKV+ K + + P
Sbjct: 65 KENFHLEKGFGNKQLQVERIID--RIFQSSLKNRTEIKVKPKNNPQKKQNIKP 115
>gnl|CDD|177288 PHA00616, PHA00616, hypothetical protein.
Length = 44
Score = 26.7 bits (59), Expect = 3.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 370 FQCNDCGSTFRLKRHLNSHINRLHK 394
+QC CG FR K+ + H+ +HK
Sbjct: 2 YQCLRCGGIFRKKKEVIEHLLSVHK 26
>gnl|CDD|227176 COG4839, FtsL, Protein required for the initiation of cell division
[Cell division and chromosome partitioning].
Length = 120
Score = 28.5 bits (64), Expect = 3.4
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 33 EEETLEDGLDQSTLEN---DRIIDTAHIKGETLKPNVIKV 69
E++T D L Q + +RI+D A G L +KV
Sbjct: 78 EQKTENDDLKQEVKDLSSPERILDIAKKAGLKLNNENVKV 117
>gnl|CDD|107360 cd06365, PBP1_Pheromone_receptor, Ligand-binding domain of the V2R
phermone receptor, a member of the family C receptors
within the G-protein coupled receptor superfamily.
Ligand-binding domain of the V2R phermone receptor, a
member of the family C receptors within the G-protein
coupled receptor superfamily, which also includes the
metabotropic glutamate receptor, the GABAb receptor, the
calcium-sensing receptor (CaSR), the T1R taste receptor,
and a small group of uncharacterized orphan receptors.
Length = 469
Score = 29.9 bits (68), Expect = 3.5
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 144 KMKSFTKKLHTRKY-NDKF--SFGENKFKCQF 172
K F + ++ KY D F F C
Sbjct: 296 GFKDFLQTVNPSKYPEDIFLEKLWWIYFNCSL 327
>gnl|CDD|235023 PRK02277, PRK02277, orotate phosphoribosyltransferase-like protein;
Provisional.
Length = 200
Score = 29.1 bits (66), Expect = 4.3
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 18/79 (22%)
Query: 15 TPVSDESQIQFAMQVPKKEEETLEDGLDQSTLEN------------DRIIDTAHIKGETL 62
T V+DE A+ PKK + + S N D +I + G T+
Sbjct: 101 TLVADELGKDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITS----GTTM 156
Query: 63 KPNVIKVRIKKKRGEPRKA 81
K I+ +K+ G+P
Sbjct: 157 K-ETIEY-LKEHGGKPVAV 173
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 26.1 bits (57), Expect = 4.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 428 WKCEKCDMRFVTNKNLKRHMKVH 450
+KC C F + LKRH++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 25.3 bits (55), Expect = 8.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 197 FKCEVCPMKFHRQVSLKKHVEAVH 220
FKC +C F + +LK+H+ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKHH 24
Score = 25.3 bits (55), Expect = 8.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 336 FQCRICDKILSNIQGIRRHMENMH 359
F+C +C K S+ ++RH+ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKHH 24
>gnl|CDD|224487 COG1571, COG1571, Predicted DNA-binding protein containing a
Zn-ribbon domain [General function prediction only].
Length = 421
Score = 29.6 bits (67), Expect = 4.6
Identities = 9/41 (21%), Positives = 11/41 (26%), Gaps = 11/41 (26%)
Query: 227 KCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQ 267
C CG A + F+C CG R
Sbjct: 352 VCPRCGGR-----------MKSAGRNGFRCKKCGTRARETL 381
>gnl|CDD|223452 COG0375, HybF, Zn finger protein HypA/HybF (possibly regulating
hydrogenase expression) [General function prediction
only].
Length = 115
Score = 28.0 bits (63), Expect = 5.6
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 22/94 (23%)
Query: 176 WFEQRGKRRKHVNGVHLKIKRFKC-EVCPMKFHRQVSLKKHVEA----VHLKLKP--CKC 228
E+ G +R V V L+I C E ++F +V + + A +H++ +P C C
Sbjct: 17 QAEKHGAKR--VTAVWLEIGELSCVEPEALRFAFEV-VAEGTIAEGAELHIEEEPAECWC 73
Query: 229 EVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKH 262
CG+ ++ ++CP CG
Sbjct: 74 LDCGQEVE------------LEELDYRCPKCGSI 95
>gnl|CDD|238704 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which
includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus
solfataricus ssSir2, and several bacterial homologs; and
are members of the SIR2 family of proteins, silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation. Sir2
proteins have been shown to regulate gene silencing, DNA
repair, metabolic enzymes, and life span. The Sir2
homolog from the archaea Sulfolobus solftaricus
deacetylates the non-specific DNA protein Alba to
mediate transcription repression.
Length = 222
Score = 28.9 bits (65), Expect = 5.8
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 448 KVHEKNRNMLDSSCNECGKQYKWESFLQKHKKICTTTCKSCG 489
V E + + + C CG +Y E KK C CG
Sbjct: 103 NVIELHGTLQTAYCVNCGSKYDLEEVK-YAKKHEVPRCPKCG 143
>gnl|CDD|188713 cd09327, LIM1_abLIM, The first LIM domain of actin binding LIM
(abLIM) proteins. The first LIM domain of actin binding
LIM (abLIM) proteins: Three homologous members of the
abLIM protein family have been identified; abLIM-1,
abLIM-2 and abLIM-3. The N-terminal of abLIM consists of
four tandem repeats of LIM domains and the C-terminal of
acting binding LIM protein is a villin headpiece domain,
which has strong actin binding activity. The abLIM-1,
which is expressed in retina, brain, and muscle tissue,
has been indicated to function as a tumor suppressor.
AbLIM-2 and -3, mainly expressed in muscle and neuronal
tissue, bind to F-actin strongly. They may serve as a
scaffold for signaling modules of the actin cytoskeleton
and thereby modulate transcription. It has shown that
LIM domains of abLIMs interact with STARS (striated
muscle activator of Rho signaling), which directly binds
actin and stimulates serum-response factor
(SRF)-dependent transcription. All LIM domains are 50-60
amino acids in size and share two characteristic highly
conserved zinc finger motifs. The two zinc fingers
contain eight conserved residues, mostly cysteines and
histidines, which coordinately bond to two zinc atoms.
LIM domains function as adaptors or scaffolds to support
the assembly of multimeric protein complexes.
Length = 52
Score = 26.5 bits (59), Expect = 6.1
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 312 CSVCDRLYKSDYLRRKHERSHSSIFQCRICDKILSN 347
C C + K + LR + + H F C++C L+
Sbjct: 1 CYKCGKKCKGEVLRVQDKYFHIKCFTCKVCGCDLAQ 36
>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain. Ig: immunoglobulin (Ig) domain
found in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
this group are components of immunoglobulin, neuroglia,
cell surface glycoproteins, such as, T-cell receptors,
CD2, CD4, CD8, and membrane glycoproteins, such as,
butyrophilin and chondroitin sulfate proteoglycan core
protein. A predominant feature of most Ig domains is a
disulfide bridge connecting the two beta-sheets with a
tryptophan residue packed against the disulfide bond.
Length = 74
Score = 27.1 bits (59), Expect = 6.1
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 232 GKSFSNNSTLKVHSTTHADQGRFKC 256
+ S +STL + + T D G + C
Sbjct: 36 RGTSSGSSTLTISNVTLEDSGTYTC 60
>gnl|CDD|201787 pfam01423, LSM, LSM domain. The LSM domain contains Sm proteins as
well as other related LSM (Like Sm) proteins. The U1,
U2, U4/U6, and U5 small nuclear ribonucleoprotein
particles (snRNPs) involved in pre-mRNA splicing contain
seven Sm proteins (B/B', D1, D2, D3, E, F and G) in
common, which assemble around the Sm site present in
four of the major spliceosomal small nuclear RNAs. The
U6 snRNP binds to the LSM (Like Sm) proteins. Sm
proteins are also found in archaebacteria, which do not
have any splicing apparatus suggesting a more general
role for Sm proteins. All Sm proteins contain a common
sequence motif in two segments, Sm1 and Sm2, separated
by a short variable linker. This family also includes
the bacterial Hfq (host factor Q) proteins. Hfq are also
RNA-binding proteins, that form hexameric rings.
Length = 66
Score = 26.4 bits (59), Expect = 7.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 269 FDDHMNMHSGDVKYTCTYCEKSFL 292
FD MN+ DV+ T + + L
Sbjct: 28 FDQFMNLVLDDVEETIKDGKVNKL 51
>gnl|CDD|132813 cd07280, PX_YPT35, The phosphoinositide binding Phox Homology
domain of the fungal protein YPT35. The PX domain is a
phosphoinositide (PI) binding module present in many
proteins with diverse functions such as cell signaling,
vesicular trafficking, protein sorting, and lipid
modification, among others. This subfamily is composed
of YPT35 proteins from the fungal subkingdom Dikarya.
The PX domain is involved in targeting of proteins to
PI-enriched membranes, and may also be involved in
protein-protein interaction. The PX domain of YPT35
binds to phosphatidylinositol 3-phosphate (PI3P). It
also serves as a protein interaction domain, binding to
members of the Yip1p protein family, which localize to
the ER and Golgi. YPT35 is mainly associated with
endosomes and together with Yip1p proteins, may be
involved in a specific function in the endocytic
pathway.
Length = 120
Score = 27.7 bits (62), Expect = 7.3
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 490 KRYSSIYVLRNHVKSCYGQQK 510
KRYS LR + + + K
Sbjct: 43 KRYSEFVQLREALLDEFPRHK 63
>gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family
[Transcription].
Length = 250
Score = 28.4 bits (64), Expect = 8.1
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 455 NMLDSSCNECGKQYKWESFLQKHKKICTTTCKSCGKRYSSIYVLRNHV 502
++ C++CG QY E ++ + C CG VLR V
Sbjct: 119 SLKRVRCSKCGNQYYDEDVIKFIEDGLIPRCPKCGG-----PVLRPDV 161
>gnl|CDD|128804 smart00531, TFIIE, Transcription initiation factor IIE.
Length = 147
Score = 27.7 bits (62), Expect = 8.4
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 254 FKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYC 287
+KCP C K TF + + D +TC C
Sbjct: 100 YKCPNCQS----KYTFLEANQLLDMDGTFTCPRC 129
>gnl|CDD|203513 pfam06750, DiS_P_DiS, Bacterial Peptidase A24 N-terminal domain.
This family is found at the N-terminus of the pre-pilin
peptidases (pfam01478). It's function has not been
specifically determined; however some of the family have
been characterized as bifunctional, and this domain may
contain the N-methylation activity (EC:2.1.1.-). It
consists of an intracellular region between a pair of
transmembrane. This region contains an invariant proline
and two almost fully conserved disulphide bridges -
hence the name DiS-P-DiS. The cysteines have been shown
to be essential to the overall function of the enzyme
in, but their role was incorrectly ascribed.
Length = 86
Score = 26.7 bits (60), Expect = 9.6
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 13/47 (27%)
Query: 459 SSCNECGKQYKWE------SFL-QKHKKICTTTCKSCGKRYSSIYVL 498
S C CG + +W S+L + + C+ CG S Y L
Sbjct: 28 SHCPHCGHKLRWYDNIPILSYLLLRGR------CRYCGAPISIRYPL 68
>gnl|CDD|227051 COG4707, COG4707, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 107
Score = 27.1 bits (60), Expect = 9.7
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 124 NGSRIHYPSEKTDVKQLRLDKMKSFTKKLHTRKYNDKFSFGENK 167
NG ++YP +K + +M F K ++ F G
Sbjct: 68 NGGWVYYPEKKGERWSFIAKEMMEFINK----EFYQIFLGGSGD 107
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.134 0.423
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,413,274
Number of extensions: 2238961
Number of successful extensions: 2554
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2526
Number of HSP's successfully gapped: 140
Length of query: 514
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 413
Effective length of database: 6,457,848
Effective search space: 2667091224
Effective search space used: 2667091224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.3 bits)