RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2973
(514 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 82.1 bits (204), Expect = 2e-18
Identities = 67/279 (24%), Positives = 92/279 (32%), Gaps = 98/279 (35%)
Query: 204 MKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHI 263
+ S A+ KP C CGKSFS + L H TH + +KCP CGK
Sbjct: 1 ISEFGSSSSVAQ-AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSF 59
Query: 264 RHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDY 323
K+ H H+G+ Y C C KSF + +L
Sbjct: 60 SDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANL-------------------------- 93
Query: 324 LRRKHERSHSSIFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKR 383
R H+R+H+ E+P+ C +CG +F
Sbjct: 94 --RAHQRTHTG--------------------------------EKPYACPECGKSFSQLA 119
Query: 384 HLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNL 443
HL +H QR H+G K +KC +C F NL
Sbjct: 120 HLRAH---------------------QRT-------HTGE--KPYKCPECGKSFSREDNL 149
Query: 444 KRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKI 480
H + H EK C ECGK + L H++
Sbjct: 150 HTHQRTHTGEK-----PYKCPECGKSFSRRDALNVHQRT 183
Score = 77.5 bits (192), Expect = 8e-17
Identities = 53/169 (31%), Positives = 73/169 (43%), Gaps = 2/169 (1%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLKL 223
GE + C C F + +H H K +KC C F + L +H + H
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGE 75
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYT 283
KP KC CGKSFS + L+ H TH + + CP CGK H H+G+ Y
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYK 135
Query: 284 CTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSH 332
C C KSF + +L H H+ E KC C + + H+R+H
Sbjct: 136 CPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 70.9 bits (175), Expect = 2e-14
Identities = 59/274 (21%), Positives = 89/274 (32%), Gaps = 101/274 (36%)
Query: 234 SFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLY 293
S +S+ + + + CP CGK +H H+G+ Y C C KSF
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 294 KKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSHSSIFQCRICDKILSNIQGIRR 353
KK L +H+R+H+
Sbjct: 62 KKDL----------------------------TRHQRTHTG------------------- 74
Query: 354 HMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLN 413
E+P++C +CG +F + +L +H QR
Sbjct: 75 -------------EKPYKCPECGKSFSQRANLRAH---------------------QRT- 99
Query: 414 YHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWE 471
H+G K + C +C F +L+ H + H EK C ECGK + E
Sbjct: 100 ------HTGE--KPYACPECGKSFSQLAHLRAHQRTHTGEK-----PYKCPECGKSFSRE 146
Query: 472 SFLQKHKKICTT----TCKSCGKRYSSIYVLRNH 501
L H++ T C CGK +S L H
Sbjct: 147 DNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 56.3 bits (137), Expect = 2e-09
Identities = 41/115 (35%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLKL 223
GE +KC C F QR R H H K + C C F + L+ H + H
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAH-QRTHTGE 131
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSG 278
KP KC CGKSFS L H TH + +KCP CGK + + H H+G
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 37.4 bits (88), Expect = 0.005
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 435 MRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKICTT----TCKSC 488
+ + + + EK C ECGK + L +H++ T C C
Sbjct: 1 ISEFGSSSSVAQAALEPGEKPYA-----CPECGKSFSRSDHLAEHQRTHTGEKPYKCPEC 55
Query: 489 GKRYSSIYVLRNH 501
GK +S L H
Sbjct: 56 GKSFSDKKDLTRH 68
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 71.8 bits (177), Expect = 2e-15
Identities = 38/173 (21%), Positives = 60/173 (34%), Gaps = 63/173 (36%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHM---NMHSGDV 280
+C C K F + LKVH+ H + F+CP CGK K+ +H M+ +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ 65
Query: 281 KYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSHSSIFQCRI 340
+TC+ C+++F + L R H SH+
Sbjct: 66 VFTCSVCQETFRRRMEL----------------------------RLHMVSHTG------ 91
Query: 341 CDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLH 393
E P++C+ C F K+ L SH+ +LH
Sbjct: 92 --------------------------EMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 71.4 bits (176), Expect = 3e-15
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVH---STTHADQ 251
+C C KF + LK H H KP +C CGK + L H + + +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 252 GRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSL-KHHLFVHSSE 307
F C +C + R + HM H+G++ Y C+ C + F+ KK L H + +HS
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP 121
Score = 58.3 bits (142), Expect = 1e-10
Identities = 28/123 (22%), Positives = 41/123 (33%), Gaps = 22/123 (17%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH------KLKLNCVHCQAIFTNKQRLNYH--ILT 418
+C C F K +L H NR H + C C + K+ L H
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFE----CPKCGKCYFRKENLLEHEARNC 59
Query: 419 KHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQK 476
+ + + C C F L+ HM H E C+ C +Q+ + LQ
Sbjct: 60 MNRSE--QVFTCSVCQETFRRRMELRLHMVSHTGEM-----PYKCSSCSQQFMQKKDLQS 112
Query: 477 HKK 479
H
Sbjct: 113 HMI 115
Score = 46.3 bits (111), Expect = 1e-06
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKH--VNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHL 221
GE F+C C + ++ +H N ++ + F C VC F R++ L+ H H
Sbjct: 32 GEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH-MVSHT 90
Query: 222 KLKPCKCEVCGKSFSNNSTLKVH 244
P KC C + F L+ H
Sbjct: 91 GEMPYKCSSCSQQFMQKKDLQSH 113
Score = 35.6 bits (83), Expect = 0.009
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 461 CNECGKQYKWESFLQKHKKICTT----TCKSCGKRYSSIYVLRNH 501
C C K++ + +L+ H + T C CGK Y L H
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 68.4 bits (168), Expect = 6e-14
Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 14/153 (9%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVEA--VHLKLKPCKCEVCG-----KSFSNNSTLKVHSTT 247
+ + C +F Q L H+ + +H + K C G + F L VH
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 248 HADQGRFKCPI--CGKHIRHKQTFDDHMNMHSGDVKYTCTY--CEKSFLYKKSL-KHHLF 302
H + KC C K + H+ H+G+ Y C + C K+F KH
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121
Query: 303 VHSSE--FTSKCSVCDRLYKSDYLRRKHERSHS 333
HS+E + K C + Y RKH ++
Sbjct: 122 THSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 65.3 bits (160), Expect = 6e-13
Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 42/182 (23%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTT---HADQGRFKCPICGKHIRHKQ-----TFDDHMNM 275
C+ + C + F + L H + H ++ F C G + HM
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 276 HSGDVKYTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSHS 333
H+G+ + CT+ C KS+ ++LK HL H+ E C
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEG----------------- 104
Query: 334 SIFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCN--DCGSTFRLKRHLNSHINR 391
C K SN +H H+++K P+ C C + L H+ +
Sbjct: 105 -------CSKAFSNASDRAKHQNRTHSNEK-----PYVCKLPGCTKRYTDPSSLRKHV-K 151
Query: 392 LH 393
Sbjct: 152 TV 153
Score = 58.8 bits (143), Expect = 1e-10
Identities = 43/159 (27%), Positives = 57/159 (35%), Gaps = 30/159 (18%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLHK---------LKLNCVHCQAIFTNKQRLNYHIL 417
E + + C F + L HIN H C F + L H+
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 418 TKHSGPNYKAWKC--EKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNE--CGKQYKWE 471
H+G K KC E C + +NLK H++ H EK C C K +
Sbjct: 61 R-HTGE--KPHKCTFEGCRKSYSRLENLKTHLRSHTGEK-----PYMCEHEGCSKAFSNA 112
Query: 472 SFLQKHKKICTT-----TCKS--CGKRYSSIYVLRNHVK 503
S KH+ + CK C KRY+ LR HVK
Sbjct: 113 SDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 46.4 bits (111), Expect = 2e-06
Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 14/127 (11%)
Query: 164 GENKFKCQFCPMW-----FEQRGKRRKHVNGVHLKIKRFKC--EVCPMKFHRQVSLKKHV 216
+F C + F+ + H+ H K KC E C + R +LK H+
Sbjct: 31 ERKEFVCHWGGCSRELRPFKAQYMLVVHMR-RHTGEKPHKCTFEGCRKSYSRLENLKTHL 89
Query: 217 EAVHLKLKPCKCE--VCGKSFSNNSTLKVHST-THADQGRFKCPI--CGKHIRHKQTFDD 271
H KP CE C K+FSN S H TH+++ + C + C K +
Sbjct: 90 R-SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRK 148
Query: 272 HMNMHSG 278
H+ G
Sbjct: 149 HVKTVHG 155
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 66.7 bits (164), Expect = 7e-14
Identities = 26/90 (28%), Positives = 42/90 (46%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYT 283
K C+ CG+ F+ + L +H TH D+ + C IC K R + DH +HS + +
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 284 CTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
C C K F ++L H +H + +
Sbjct: 76 CQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 50.9 bits (123), Expect = 3e-08
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLKL 223
+ +F C+FC F + H H + + C++C F RQ L+ H +H K
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKE 71
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP KC+ CGK F + TL VH T H
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 48.2 bits (116), Expect = 2e-07
Identities = 25/116 (21%), Positives = 38/116 (32%), Gaps = 37/116 (31%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYK 426
++ F C CG F +L H +R H+ +
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIH---------------------ERT-------HTDE--R 44
Query: 427 AWKCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKI 480
+ C+ C F +L+ H +H EK C ECGK + L HK +
Sbjct: 45 PYTCDICHKAFRRQDHLRDHRYIHSKEK-----PFKCQECGKGFCQSRTLAVHKTL 95
Score = 42.8 bits (102), Expect = 2e-05
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKICTT 483
K + C+ C F + NL H + H E+ +C+ C K ++ + L+ H+ I +
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDER-----PYTCDICHKAFRRQDHLRDHRYIHSK 70
Query: 484 ----TCKSCGKRYSSIYVLRNH 501
C+ CGK + L H
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVH 92
Score = 41.3 bits (98), Expect = 6e-05
Identities = 27/123 (21%), Positives = 41/123 (33%), Gaps = 35/123 (28%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLY-KSDYLRRKHER 330
++ C +C + F +L H H+ E C +C + + + D+L R H
Sbjct: 8 GRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL-RDHRY 66
Query: 331 SHSSIFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHIN 390
HS E+PF+C +CG F R L H
Sbjct: 67 IHSK--------------------------------EKPFKCQECGKGFCQSRTLAVH-K 93
Query: 391 RLH 393
LH
Sbjct: 94 TLH 96
Score = 34.7 bits (81), Expect = 0.011
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 32/88 (36%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYK 426
ERP+ C+ C FR + HL H + + HS K
Sbjct: 43 ERPYTCDICHKAFRRQDHLRDH---------------------RYI-------HSKE--K 72
Query: 427 AWKCEKCDMRFVTNKNLKRHMKVH--EK 452
+KC++C F ++ L H +H
Sbjct: 73 PFKCQECGKGFCQSRTLAVHKTLHMQTS 100
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 66.3 bits (163), Expect = 8e-14
Identities = 26/89 (29%), Positives = 36/89 (40%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYT 283
P KCEVCGK FS LK H H +KC C + + H+ +HS + +
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 284 CTYCEKSFLYKKSLKHHLFVHSSEFTSKC 312
C C + L HL H+ +
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 63.6 bits (156), Expect = 6e-13
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 189 GVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTH 248
G KCEVC F R+ LK H H +KP KC+ C + +++S+L H H
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Query: 249 ADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTC 284
+D+ FKC IC R+ H+ H+GD +
Sbjct: 60 SDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 50.5 bits (122), Expect = 3e-08
Identities = 26/118 (22%), Positives = 40/118 (33%), Gaps = 37/118 (31%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYK 426
P +C CG F K L +H R H+G K
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTH---------------------MRC-------HTGV--K 35
Query: 427 AWKCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKICT 482
+KC+ CD + +L +H+++H E+ C C + S L H + T
Sbjct: 36 PYKCKTCDYAAADSSSLNKHLRIHSDERPFK-----CQICPYASRNSSQLTVHLRSHT 88
Score = 47.4 bits (114), Expect = 4e-07
Identities = 22/82 (26%), Positives = 27/82 (32%), Gaps = 11/82 (13%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKICTT 483
KCE C F LK HM+ H K C C S L KH +I +
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVK-----PYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 484 ----TCKSCGKRYSSIYVLRNH 501
C+ C + L H
Sbjct: 62 ERPFKCQICPYASRNSSQLTVH 83
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 67.7 bits (166), Expect = 1e-13
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 13/129 (10%)
Query: 219 VHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFK---------CPICGKHIRHKQTF 269
+ + C ++FS L H T G + CP GK + K
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 270 DDHMNMHSGDVKYTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSV--CDRLYKSDYLR 325
+H+ +H+G+ + C + C K F ++LK H H+ E KC CDR + + R
Sbjct: 79 VNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDR 138
Query: 326 RKHERSHSS 334
+KH H+S
Sbjct: 139 KKHMHVHTS 147
Score = 66.2 bits (162), Expect = 4e-13
Identities = 32/136 (23%), Positives = 47/136 (34%), Gaps = 12/136 (8%)
Query: 190 VHLKIKRFKCEVCPMKFHRQVSLKKHVEAVH--------LKLKPCKCEVCGKSFSNNSTL 241
+ + C F L HV H +C GKSF L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 242 KVHSTTHADQGRFKCPI--CGKHIRHKQTFDDHMNMHSGDVKYTCTY--CEKSFLYKKSL 297
H H + F CP CGK + H H+G+ + C + C++ F
Sbjct: 79 VNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDR 138
Query: 298 KHHLFVHSSEFTSKCS 313
K H+ VH+S+ + S
Sbjct: 139 KKHMHVHTSDKSGPSS 154
Score = 55.4 bits (134), Expect = 2e-09
Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 21/158 (13%)
Query: 231 CGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYT------- 283
G S Q C + H+ M
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 284 --CTYCEKSFLYKKSLKHHLFVHSSEFTSKCSV--CDRLYKSDYLRRKHERSHSSI--FQ 337
C KSF K L +H+ VH+ E C C +++ + H+R+H+ F+
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 338 CRI--CDKILSNIQGIRRHMENMHNSDKDNTERPFQCN 373
C CD+ +N ++HM ++H SDK +
Sbjct: 123 CEFEGCDRRFANSSDRKKHM-HVHTSDK-----SGPSS 154
Score = 49.6 bits (119), Expect = 2e-07
Identities = 30/131 (22%), Positives = 44/131 (33%), Gaps = 20/131 (15%)
Query: 364 DNTERPFQCNDCGSTFRLKRHLNSHINRLH----------KLKLNCVHCQAIFTNKQRLN 413
D + C TF L +H+ H C F K +L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 414 YHILTKHSGPNYKAWKC--EKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYK 469
HI H+G K + C C F ++NLK H + H EK C +++
Sbjct: 80 NHIRV-HTGE--KPFPCPFPGCGKIFARSENLKIHKRTHTGEKP---FKCEFEGCDRRFA 133
Query: 470 WESFLQKHKKI 480
S +KH +
Sbjct: 134 NSSDRKKHMHV 144
Score = 47.7 bits (114), Expect = 9e-07
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 12/108 (11%)
Query: 406 FTNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVH------EKNRNMLDS 459
++ Q + + K + + CD F T L H+ + + N
Sbjct: 4 GSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE 63
Query: 460 SCNECGKQYKWESFLQKHKKICT----TTCKS--CGKRYSSIYVLRNH 501
C GK +K + L H ++ T C CGK ++ L+ H
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH 111
Score = 41.5 bits (98), Expect = 1e-04
Identities = 28/106 (26%), Positives = 36/106 (33%), Gaps = 15/106 (14%)
Query: 164 GENKFKCQFCPMW---------FEQRGKRRKHVNGVHLKIKRFKCEV--CPMKFHRQVSL 212
+ W F+ + K H+ VH K F C C F R +L
Sbjct: 50 VGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENL 108
Query: 213 KKHVEAVHLKLKPCKCEV--CGKSFSNNSTLKVHSTTHADQGRFKC 256
K H H KP KCE C + F+N+S K H H
Sbjct: 109 KIHKR-THTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 40.3 bits (95), Expect = 3e-04
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 336 FQCRICDKILSNIQGIRRHMENMH---NSDKDNTERPFQCNDCGSTFRLKRHLNSHINRL 392
+ CD+ S + + H+ H ++ +C G +F+ K L +HI R+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-RV 84
Query: 393 HK----LKLNCVHCQAIFTNKQRLNYHILTKHSGPNYKAWKC--EKCDMRFVTNKNLKRH 446
H C IF + L H T H+G K +KC E CD RF + + K+H
Sbjct: 85 HTGEKPFPCPFPGCGKIFARSENLKIHKRT-HTGE--KPFKCEFEGCDRRFANSSDRKKH 141
Query: 447 MKVH 450
M VH
Sbjct: 142 MHVH 145
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 65.6 bits (161), Expect = 1e-13
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVK-- 281
CE+CGK F + L H +H+ + + CP+CG + K H+ H G V
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65
Query: 282 YTCTYCEKSFLYKKSLKHHL 301
Y C C K F L H+
Sbjct: 66 YICQSCGKGFSRPDHLNGHI 85
Score = 51.7 bits (125), Expect = 1e-08
Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGR- 253
CE+C F L +H + H KP C VCG F + H +H
Sbjct: 6 SGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 254 -FKCPICGKHIRHKQTFDDHMNM-HSG 278
+ C CGK + H+ HSG
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 48.6 bits (117), Expect = 1e-07
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 13/86 (15%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKICTT 483
CE C F +L RH H EK SC CG ++K + + H +
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEK-----PYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 484 ------TCKSCGKRYSSIYVLRNHVK 503
C+SCGK +S L H+K
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIK 86
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 64.8 bits (159), Expect = 3e-13
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRF 254
K + C+ C F + +H ++HL L+P C VCGK F L H H +
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPY 66
Query: 255 KCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSL 297
+C IC K + +F H ++ S Y E++
Sbjct: 67 ECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 57.5 bits (140), Expect = 2e-10
Identities = 28/164 (17%), Positives = 42/164 (25%), Gaps = 63/164 (38%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYT 283
K C+ CGKSF++ S H + H + C +CGK + K HM +H+G Y
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Query: 284 CTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSHSSIFQCRICDK 343
C C K F+ F H S
Sbjct: 68 CNICAKR-----------FMWRDSF-------------------HRHVTSC--------- 88
Query: 344 ILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNS 387
+ ++ +S
Sbjct: 89 -----------------------TKSYEAAKAEQNTTEASGPSS 109
Score = 43.2 bits (103), Expect = 1e-05
Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 44/133 (33%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYK 426
++ + C CG +F K + H + H G +
Sbjct: 8 DKLYPC-QCGKSFTHKSQRDRH---------------------MSM-------HLGL--R 36
Query: 427 AWKCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKICTT- 483
+ C C +F +L HMK+H K CN C K++ W H+ + +
Sbjct: 37 PYGCGVCGKKFKMKHHLVGHMKIHTGIK-----PYECNICAKRFMWRDSF--HRHVTSCT 89
Query: 484 ---TCKSCGKRYS 493
+ +
Sbjct: 90 KSYEAAKAEQNTT 102
Score = 37.8 bits (89), Expect = 0.001
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 35/108 (32%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYK 426
RP+ C CG F++K HL H ++ H+G K
Sbjct: 35 LRPYGCGVCGKKFKMKHHLVGH---------------------MKI-------HTGI--K 64
Query: 427 AWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFL 474
++C C RF+ + RH+ K + + S
Sbjct: 65 PYECNICAKRFMWRDSFHRHVTSCTK-----SYEAAKAEQNTTEASGP 107
Score = 29.7 bits (68), Expect = 0.74
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 463 ECGKQYKWESFLQKHKKICTT----TCKSCGKRYSSIYVLRNH 501
+CGK + +S +H + C CGK++ + L H
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 56
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 62.4 bits (152), Expect = 1e-12
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQG---RFKCPICGKHIRHKQTFDDHMNMHSGDV 280
+CE+CG + ++L H HA+ RF C CGK + H + +
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 281 KYTC 284
Sbjct: 66 LLAP 69
Score = 51.6 bits (124), Expect = 8e-09
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVE--AVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQG 252
+CE+C ++ SL H A + CE CGK F ++ H +
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 253 RFKCPICGK 261
Sbjct: 66 LLAPQESSG 74
Score = 48.9 bits (117), Expect = 6e-08
Identities = 18/84 (21%), Positives = 22/84 (26%), Gaps = 27/84 (32%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYK 426
QC CG T R K LN H R H +
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQ-RKH------------------------AETVA--AL 37
Query: 427 AWKCEKCDMRFVTNKNLKRHMKVH 450
+ CE C RF ++ H
Sbjct: 38 RFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 48.9 bits (117), Expect = 7e-08
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHVNGVHLKI---KRFKCEVCPMKFHRQVSLKKHVEAVH 220
G + +C+ C Q+ H H + RF CE C +F + S+ H H
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 221 LKLKPCKCEVCGKSF 235
L E G S
Sbjct: 63 PALLLAPQESSGPSS 77
Score = 45.5 bits (108), Expect = 1e-06
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 429 KCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKICTT----- 483
+CE C +L H + H + L C CGK+++ + H+
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA 68
Query: 484 TCKSCGK 490
+S G
Sbjct: 69 PQESSGP 75
Score = 42.8 bits (101), Expect = 8e-06
Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 3/64 (4%)
Query: 336 FQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLHKL 395
QC IC + H H F C CG F + +H ++ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQ-RKHAETV--AALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Query: 396 KLNC 399
L
Sbjct: 65 LLLA 68
Score = 38.9 bits (91), Expect = 2e-04
Identities = 15/61 (24%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 276 HSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSK---CSVCD-RLYKSDYLRRKHERS 331
SG C C + K SL H H+ + C C R K D + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAA-HRSK 60
Query: 332 H 332
Sbjct: 61 S 61
Score = 32.8 bits (75), Expect = 0.035
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 460 SCNECGKQYKWESFLQKHKKICTT-------TCKSCGKRYSSIYVLRNHVK 503
C CG + ++ L H++ C+ CGKR+ + H
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS 59
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 65.3 bits (160), Expect = 1e-12
Identities = 45/212 (21%), Positives = 71/212 (33%), Gaps = 45/212 (21%)
Query: 195 KRFKCEV--CPMKFHRQVSLKKHVEAVHLKLKPCKCE--VCGKSFSNNSTLKVHSTTHAD 250
KR+ C C +++ L+ H H KP C+ C K F++ L HS TH
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 69
Query: 251 QGRFKC--PICGKHIRHKQTFDDHMNMHSG--DVKYTCTY--CEKSFLYKKSLKHHLFVH 304
+ F C C K H N Y C + C K+F LK H F H
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Query: 305 SSEFTSKCS--VCDRLYKSDYLRRKHERSHSSIFQCRICDKILSNIQGIRRHMENMHNSD 362
+ + +C CD+ + ++HE+ H+
Sbjct: 130 TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---------------------------- 161
Query: 363 KDNTERPFQCNDCGSTFRLKRHLNSHINRLHK 394
++ C+ G T+ H+ H+
Sbjct: 162 -YPCKKDDSCSFVGKTW---TLYLKHVAECHQ 189
Score = 55.3 bits (134), Expect = 4e-09
Identities = 48/228 (21%), Positives = 79/228 (34%), Gaps = 61/228 (26%)
Query: 272 HMNMHSGDVKYTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCS--VCDRLYKSDYLRRK 327
+ +Y C++ C ++ L+ HL H+ E C C++ + S + +
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 328 HERSHSSIFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCND--CGSTFRLKRHL 385
H +H+ E+ F C+ C F K ++
Sbjct: 63 HSLTHTG--------------------------------EKNFTCDSDGCDLRFTTKANM 90
Query: 386 NSHINRLHKLKL-----NCVHCQAIFTNKQRLNYHILTKHSGPNYKAWKC--EKCDMRFV 438
H NR H +K+ + +C F +L H + H+ ++C E CD RF
Sbjct: 91 KKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS-HTQQ--LPYECPHEGCDKRFS 147
Query: 439 TNKNLKRHMKVH-----EKNRNMLDSSCNECGKQYKWESFLQKHKKIC 481
LKRH KVH +K + C K + KH C
Sbjct: 148 LPSRLKRHEKVHAGYPCKK--------DDSCSFVGKTWTLYLKHVAEC 187
Score = 52.6 bits (127), Expect = 3e-08
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 25/153 (16%)
Query: 367 ERPFQCN--DCGSTFRLKRHLNSHINRLHK----LKLNCVHCQAIFTNKQRLNYHILTKH 420
+ + C+ DCG+ + L +H+ H C+ FT+ L H LT H
Sbjct: 10 YKRYICSFADCGAAYNKNWKLQAHL-CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT-H 67
Query: 421 SGPNYKAWKCE--KCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCN--ECGKQYKWESFL 474
+G K + C+ CD+RF T N+K+H K C+ CGK +K + L
Sbjct: 68 TGE--KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVY---VCHFENCGKAFKKHNQL 122
Query: 475 QKHKKICTT----TCK--SCGKRYSSIYVLRNH 501
+ H+ T C C KR+S L+ H
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
Score = 43.0 bits (102), Expect = 6e-05
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 12/87 (13%)
Query: 193 KIKRFKCEV--CPMKFHRQVSLKKHVEAVHLKLKPCKC--EVCGKSFSNNSTLKVHSTTH 248
KI + C C F + LK H + H + P +C E C K FS S LK H H
Sbjct: 101 KICVYVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Query: 249 ADQGRFKCPICGK-------HIRHKQT 268
A K C +++H
Sbjct: 160 AGYPCKKDDSCSFVGKTWTLYLKHVAE 186
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 63.3 bits (155), Expect = 2e-12
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 16/123 (13%)
Query: 195 KRFKC--EVCPMKFHRQVSLKKHV----EAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTH 248
+ C + C F +++KH+ + C CGK+F +S LK H H
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHGP------RVHVCAECGKAFVESSKLKRHQLVH 57
Query: 249 ADQGRFKCPI--CGKHIRHKQTFDDHMNMHSGDVKYTCTY--CEKSFLYKKSLKHHLFVH 304
+ F+C CGK H+ +H+GD Y C + C K F +LK H+ H
Sbjct: 58 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Query: 305 SSE 307
+
Sbjct: 118 AKA 120
Score = 49.4 bits (119), Expect = 1e-07
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 367 ERPFQC--NDCGSTFRLKRHLNSHINRLHKLKL-NCVHCQAIFTNKQRLNYHILTKHSGP 423
R C C FR + H+ H ++ C C F +L H L H+G
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHL-HTHGPRVHVCAECGKAFVESSKLKRHQLV-HTGE 60
Query: 424 NYKAWKC--EKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKK 479
K ++C E C RF + NL+ H+++H ++ + C K++ + L+ H
Sbjct: 61 --KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP---YVCPFDGCNKKFAQSTNLKSHIL 115
Query: 480 I 480
Sbjct: 116 T 116
Score = 40.2 bits (95), Expect = 2e-04
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 430 CEKCDMRFVTNKNLKRHMKVH-EKNRNMLDSSCNECGKQYKWESFLQKHKKICTT----- 483
+ C F N +++H+ H + C ECGK + S L++H+ + T
Sbjct: 10 HKGCTKMFRDNSAMRKHLHTHGPR-----VHVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Query: 484 -TCKSCGKRYSSIYVLRNH 501
T + CGKR+S + LR H
Sbjct: 65 CTFEGCGKRFSLDFNLRTH 83
Score = 39.0 bits (92), Expect = 5e-04
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEV--CPMKFHRQVSLKKHVEAVHL 221
G C C F + K ++H VH K F+C C +F +L+ HV +H
Sbjct: 31 GPRVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHT 88
Query: 222 KLKP--CKCEVCGKSFSNNSTLKVHSTTH 248
+P C + C K F+ ++ LK H TH
Sbjct: 89 GDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 38.7 bits (91), Expect = 6e-04
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLHK----LKLNCVHCQAIFTNKQRLNYHILTKHSG 422
R C +CG F L H +H + C F+ L H+ H+G
Sbjct: 32 PRVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI-HTG 89
Query: 423 PNYKAWKC--EKCDMRFVTNKNLKRHMKVH 450
+ + C + C+ +F + NLK H+ H
Sbjct: 90 D--RPYVCPFDGCNKKFAQSTNLKSHILTH 117
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 61.7 bits (151), Expect = 2e-12
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 224 KP--CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVK 281
+P C E C + FS + +L H H Q F+C IC ++ H+ H+G+
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 282 YTCTYCEKSFLYKKSLKHHLFVHSSE 307
+ C C + F K H +H +
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 44.8 bits (107), Expect = 2e-06
Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 39/118 (33%)
Query: 367 ERPFQC--NDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPN 424
ERP+ C C F L H R+ H+G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRH---------------------IRI-------HTGQ- 32
Query: 425 YKAWKCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKI 480
K ++C C F + +L H++ H EK +C+ CG+++ ++H KI
Sbjct: 33 -KPFQCRICMRNFSRSDHLTTHIRTHTGEK-----PFACDICGRKFARSDERKRHTKI 84
Score = 44.0 bits (105), Expect = 5e-06
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 426 KAWKC--EKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKIC 481
+ + C E CD RF + +L RH+++H +K C C + + L H +
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQK-----PFQCRICMRNFSRSDHLTTHIRTH 57
Query: 482 TT----TCKSCGKRYSSIYVLRNHVK 503
T C CG++++ + H K
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTK 83
Score = 26.7 bits (60), Expect = 6.0
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKH 215
G+ F+C+ C F + H+ H K F C++C KF R K+H
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRH 81
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 59.5 bits (145), Expect = 2e-11
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGR----FKCPICGKHIRHKQTFDDHMNMHSGD 279
KP C C K+F L +H + D F C CGK + T H + +G
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP 73
Query: 280 VKYTCTYCEKSF 291
S
Sbjct: 74 DGVEGENSGPSS 85
Score = 44.8 bits (107), Expect = 2e-06
Identities = 20/104 (19%), Positives = 30/104 (28%), Gaps = 37/104 (35%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPNY- 425
E+P+ C+ C TFR K+ L+ H + + PN+
Sbjct: 13 EKPYACSHCDKTFRQKQLLDMH---------------------FKR-------YHDPNFV 44
Query: 426 -KAWKCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGK 466
A+ C KC F + RH G
Sbjct: 45 PAAFVCSKCGKTFTRRNTMARHADNCAGPD-----GVEGENSGP 83
Score = 43.7 bits (104), Expect = 5e-06
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDS-SCNECGKQYKWESFLQKHKKICTT- 483
K + C CD F + L H K + + + C++CGK + + + +H C
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP 73
Query: 484 ---TCKSCGK 490
++ G
Sbjct: 74 DGVEGENSGP 83
Score = 38.3 bits (90), Expect = 5e-04
Identities = 16/113 (14%), Positives = 34/113 (30%), Gaps = 38/113 (33%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTS----KCSVCDRLY-KSDYLRR 326
H+G+ Y C++C+K+F K+ L H + CS C + + + + + R
Sbjct: 6 SGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65
Query: 327 KHERSHSSIFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTF 379
H + + + + G +
Sbjct: 66 -HADNCAG--------------------------------PDGVEGENSGPSS 85
Score = 37.9 bits (89), Expect = 7e-04
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHV---NGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVH 220
GE + C C F Q+ H + + F C C F R+ ++ +H
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH-ADNC 70
Query: 221 LKLKPCKCEVCGKSF 235
+ E G S
Sbjct: 71 AGPDGVEGENSGPSS 85
Score = 36.3 bits (85), Expect = 0.002
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 15/70 (21%)
Query: 442 NLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKICTT--------TCKSCGKR 491
+ + H EK +C+ C K ++ + L H K C CGK
Sbjct: 2 SSGSSGRTHTGEK-----PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKT 56
Query: 492 YSSIYVLRNH 501
++ + H
Sbjct: 57 FTRRNTMARH 66
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 59.8 bits (146), Expect = 3e-11
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 224 KPCKCE--VCGKSFSNNSTLKVHSTTHADQGRFKCPI--CGKHIRHKQTFDDHMNMHSGD 279
+P C C K + S L++HS H + ++C C + H H+G
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 280 VKYTCTYCEKSFLYKKSLKHHLFVHSSE--FTSKCSVCDRLY-KSDYLRRKHERSH 332
+ C C++ F LK H H+ E F+ + C + + +SD L R H H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVR-HHNMH 119
Score = 51.4 bits (124), Expect = 2e-08
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 195 KRFKCEV--CPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQG 252
K ++C+ C +F R LK+H + H +KP +C+ C + FS + LK H+ TH +
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRH-QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEK 93
Query: 253 RFKC--PICGKHIRHKQTFDDHMNMH 276
F C P C K H NMH
Sbjct: 94 PFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 51.4 bits (124), Expect = 3e-08
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 19/124 (15%)
Query: 367 ERPFQCN--DCGSTFRLKRHLNSHINRLHK----LKLNCVHCQAIFTNKQRLNYHILTKH 420
+RPF C C + HL H R H + + C+ F+ +L H H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-H 61
Query: 421 SGPNYKAWKCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCN--ECGKQYKWESFLQK 476
+G K ++C+ C +F + +LK H + H EK SC C K++ L +
Sbjct: 62 TGV--KPFQCKTCQRKFSRSDHLKTHTRTHTGEK-----PFSCRWPSCQKKFARSDELVR 114
Query: 477 HKKI 480
H +
Sbjct: 115 HHNM 118
Score = 40.2 bits (95), Expect = 2e-04
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 367 ERPFQCN--DCGSTFRLKRHLNSHINRLH------KLKLNCVHCQAIFTNKQRLNYHILT 418
E+P+QC+ DC F L H R H + C CQ F+ L H T
Sbjct: 34 EKPYQCDFKDCERRFSRSDQLKRHQ-RRHTGVKPFQ----CKTCQRKFSRSDHLKTHTRT 88
Query: 419 KHSGPNYKAWKCEK--CDMRFVTNKNLKRHMKVH 450
H+G K + C C +F + L RH +H
Sbjct: 89 -HTGE--KPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 39.8 bits (94), Expect = 3e-04
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 426 KAWKCE--KCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCN--ECGKQYKWESFLQKHKK 479
+ + C C+ R+ +L+ H + H EK C+ +C +++ L++H++
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKP-----YQCDFKDCERRFSRSDQLKRHQR 59
Query: 480 ICTT----TCKSCGKRYSSIYVLRNH 501
T CK+C +++S L+ H
Sbjct: 60 RHTGVKPFQCKTCQRKFSRSDHLKTH 85
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 56.8 bits (138), Expect = 1e-10
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 225 PCKCEVCGKSFSNNSTLKVHS-TTHADQGRFKCP--ICGKHIRHKQTFDDHMNMHSGDVK 281
PC CG+ FSN L H H Q F CP CGK K+ +HM +HS
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Query: 282 YTCTYCEKSF 291
Y C + S
Sbjct: 69 YICEFSGPSS 78
Score = 41.4 bits (98), Expect = 3e-05
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 164 GENKFKCQF--CPMWFEQRGKRRKHVNGVHLKIKRFKCE--VCPMKFHRQVSLKKHVEAV 219
G + C F C F R H H+ K F C C F+ + LK+H +
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH-MKL 62
Query: 220 HLKLKPCKCEVCGKSF 235
H + CE G S
Sbjct: 63 HSDTRDYICEFSGPSS 78
Score = 38.3 bits (90), Expect = 4e-04
Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 40/106 (37%)
Query: 367 ERPFQCN--DCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPN 424
C+ CG F +++LN H ++ +H
Sbjct: 5 SSGMPCDFPGCGRIFSNRQYLNHH---------------------KKY------QHIHQ- 36
Query: 425 YKAWKCE--KCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGK 466
K++ C C F K+LK HMK+H + D C G
Sbjct: 37 -KSFSCPEPACGKSFNFKKHLKEHMKLHSDTR-----DYICEFSGP 76
Score = 34.1 bits (79), Expect = 0.010
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 14/73 (19%)
Query: 429 KCEKCDMRFVTNKNLKRHMKV---HEKNRNMLDSSCNE--CGKQYKWESFLQKHKKICTT 483
C F + L H K H+K SC E CGK + ++ L++H K+ +
Sbjct: 11 DFPGCGRIFSNRQYLNHHKKYQHIHQK-----SFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 484 ----TCKSCGKRY 492
C+ G
Sbjct: 66 TRDYICEFSGPSS 78
Score = 33.7 bits (78), Expect = 0.015
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 37/109 (33%)
Query: 276 HSGDVKYTCTY--CEKSFLYKKSLKHHL-FVHSSEFTSKCS--VCDRLYKSDYLRRKHER 330
SG C + C + F ++ L HH + H + + C C + + ++H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 331 SHSSIFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTF 379
HS R + C G +
Sbjct: 62 LHSD--------------------------------TRDYICEFSGPSS 78
Score = 29.8 bits (68), Expect = 0.37
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 460 SCNECGKQYKWESFLQKHKKICTT-----TCK--SCGKRYSSIYVLRNH 501
CG+ + +L HKK +C +CGK ++ L+ H
Sbjct: 11 DFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH 59
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 56.7 bits (138), Expect = 1e-10
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 194 IKRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGR 253
+K F+C +C F R L H+ H KP C++CG+ F+ + K H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQHIL-P 58
Query: 254 FKCPICGK---HIRHKQTFDDHMNMHSG 278
+ H + + G
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKLVG 86
Score = 51.3 bits (124), Expect = 1e-08
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 429 KCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKICT---T 483
+C C F + +L H++ H EK +C+ CG+++ ++H+ I
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEK-----PFACDICGRKFARSDERKRHRDIQHILPI 59
Query: 484 TCKSCGKRYSSIYVLRNHVK 503
+ S Y L N V
Sbjct: 60 LEDKVEELLSKNYHLENEVA 79
Score = 48.3 bits (116), Expect = 1e-07
Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 36/113 (31%)
Query: 368 RPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYKA 427
+PFQC C F HL +H R H+G K
Sbjct: 2 KPFQCRICMRNFSRSDHLTTH---------------------IRT-------HTGE--KP 31
Query: 428 WKCEKCDMRFVTNKNLKRHMKVH-EKNRNMLDSSCNECGKQYKWESFLQKHKK 479
+ C+ C +F + KRH + ++ + L+
Sbjct: 32 FACDICGRKFARSDERKRHRDIQHILP-----ILEDKVEELLSKNYHLENEVA 79
Score = 44.8 bits (107), Expect = 2e-06
Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 38/116 (32%)
Query: 223 LKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKY 282
+KP +C +C ++FS + L H + H+G+ +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTH----------------------------IRTHTGEKPF 32
Query: 283 TCTYCEKSFLYKKSLKHHLFVHSSEFTSK---CSVCDRLY-KSDYLRR--KHERSH 332
C C + F K H + + L K+ +L +
Sbjct: 33 ACDICGRKFARSDERKRHRDIQ----HILPILEDKVEELLSKNYHLENEVARLKKL 84
Score = 32.1 bits (74), Expect = 0.080
Identities = 12/81 (14%), Positives = 19/81 (23%), Gaps = 31/81 (38%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLKL 223
GE F C C F + +R++H
Sbjct: 28 GEKPFACDICGRKFARSDERKRH-----------------RDIQHI-------------- 56
Query: 224 KPCKCEVCGKSFSNNSTLKVH 244
P + + S N L+
Sbjct: 57 LPILEDKVEELLSKNYHLENE 77
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 55.2 bits (134), Expect = 4e-10
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 211 SLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGR--FKCPICGKHIRHKQT 268
S H KP +C +C F+ + T+K+H + F CP C I K
Sbjct: 2 SSGSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 269 FDDHM-NMHSGDVKYT 283
H+ HS +
Sbjct: 61 LGVHLRKQHSYSGPSS 76
Score = 44.0 bits (105), Expect = 4e-06
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 399 CVHCQAIFTNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMK 448
C C A FT + HIL N + C CD +L H++
Sbjct: 18 CYICHARFTQSGTMKMHILQ-KHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 41.7 bits (99), Expect = 2e-05
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 326 RKHERSHS--SIFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKR 383
R+HS ++C IC + ++ H+ +++ F C C + K
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QKHTEN---VAKFHCPHCDTVIARKS 59
Query: 384 HLNSHINRLH 393
L H+ + H
Sbjct: 60 DLGVHLRKQH 69
Score = 41.4 bits (98), Expect = 3e-05
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 24/92 (26%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERS 331
HSG+ Y C C F ++K H+ +E +K
Sbjct: 6 SGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK-------------------- 45
Query: 332 HSSIFQCRICDKILSNIQGIRRHMENMHNSDK 363
F C CD +++ + H+ H+
Sbjct: 46 ----FHCPHCDTVIARKSDLGVHLRKQHSYSG 73
Score = 40.6 bits (96), Expect = 6e-05
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 13/70 (18%)
Query: 442 NLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKICTT------TCKSCGKRYS 493
+ + H EK C C ++ ++ H T C C +
Sbjct: 2 SSGSSGRTHSGEK-----PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIA 56
Query: 494 SIYVLRNHVK 503
L H++
Sbjct: 57 RKSDLGVHLR 66
Score = 37.1 bits (87), Expect = 8e-04
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHVNGVHL--KIKRFKCEVCPMKFHRQVSLKKHVEAVHL 221
GE ++C C F Q G + H+ + +F C C R+ L H+ H
Sbjct: 12 GEKPYECYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
Query: 222 KLKP 225
P
Sbjct: 71 YSGP 74
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 52.8 bits (128), Expect = 3e-09
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 197 FKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
F C++C F R +L H +H +P C+ CGK F S +K H+ H + KC
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 257 PICGKHIRHKQTFDDHMNMHSG 278
+CGK H H+G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 45.9 bits (110), Expect = 9e-07
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 190 VHLKI----KRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHS 245
HL I + + C+ C +FH++ +KKH +H KP KC+VCGK+FS +S L HS
Sbjct: 19 THLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKCQVCGKAFSQSSNLITHS 77
Query: 246 TTH 248
H
Sbjct: 78 RKH 80
Score = 43.2 bits (103), Expect = 7e-06
Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 37/115 (32%)
Query: 370 FQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYKAWK 429
F C CG +F+ L++H + HS + +
Sbjct: 2 FDCKICGKSFKRSSTLSTH---------------------LLI-------HSDT--RPYP 31
Query: 430 CEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKICT 482
C+ C RF ++K+H +H EK C CGK + S L H + T
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGEKPHK-----CQVCGKAFSQSSNLITHSRKHT 81
Score = 42.8 bits (102), Expect = 9e-06
Identities = 29/79 (36%), Positives = 37/79 (46%)
Query: 254 FKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
F C ICGK + T H+ +HS Y C YC K F K +K H F+H+ E KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 314 VCDRLYKSDYLRRKHERSH 332
VC + + H R H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 42.0 bits (100), Expect = 2e-05
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 429 KCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKICTT--- 483
C+ C F + L H+ +H + C CGK++ +S ++KH I T
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTR-----PYPCQYCGKRFHQKSDMKKHTFIHTGEKP 57
Query: 484 -TCKSCGKRYSSIYVLRNH 501
C+ CGK +S L H
Sbjct: 58 HKCQVCGKAFSQSSNLITH 76
Score = 33.2 bits (77), Expect = 0.026
Identities = 19/84 (22%), Positives = 26/84 (30%), Gaps = 30/84 (35%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYK 426
RP+ C CG F K + H + H+G K
Sbjct: 27 TRPYPCQYCGKRFHQKSDMKKH---------------------TFI-------HTGE--K 56
Query: 427 AWKCEKCDMRFVTNKNLKRHMKVH 450
KC+ C F + NL H + H
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSRKH 80
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 50.3 bits (121), Expect = 1e-08
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 188 NGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSN 237
K + C+ C F R L H++ VH +P KC+V S+
Sbjct: 4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 44.1 bits (105), Expect = 2e-06
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 218 AVHLKLKPCKCEVCGKSFSNNSTLKVHS-TTHADQGRFKCPICGK 261
+ KP C+ CGK FS L H H + KC +
Sbjct: 5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
Score = 36.4 bits (85), Expect = 9e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
+P+ C CG F HLN HI ++H
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 34.9 bits (81), Expect = 0.003
Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHM-NMHSGDVKYTCTYCEKSF 291
++ + + C CGK + H+ +H+ + + C
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 32.9 bits (76), Expect = 0.015
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 461 CNECGKQYKWESFLQKHKKICTT-----TCKSCGKRYSS 494
C CGK + L H K T C+ SS
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 32.6 bits (75), Expect = 0.024
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHL-FVHSSEFTSKCSVCDR 317
+ S Y C C K F L H+ VH+SE KC V
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
Score = 29.1 bits (66), Expect = 0.39
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 328 HERSHSSI--FQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTF 379
S S + C+ C K S + H++ +H +ERP +C S
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT-----SERPHKCQVWVSGP 51
Score = 26.8 bits (60), Expect = 2.5
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKF 206
+ CQ C F + H+ VH + KC+V
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 50.5 bits (122), Expect = 1e-08
Identities = 19/55 (34%), Positives = 24/55 (43%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSG 278
KP KC+ C SF L H T H + ++C ICG H +HSG
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 41.3 bits (98), Expect = 3e-05
Identities = 20/69 (28%), Positives = 27/69 (39%)
Query: 239 STLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLK 298
HS +KC C R+K H +H+G+ Y C C F +LK
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 299 HHLFVHSSE 307
H +HS E
Sbjct: 63 THTRIHSGE 71
Score = 40.5 bits (96), Expect = 5e-05
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKICT 482
K +KC++C F NL H VH EK CN CG Q+ + L+ H +I +
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEK-----PYRCNICGAQFNRPANLKTHTRIHS 69
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 442 NLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKICTT----TCKSCGKRYSSI 495
+ H + +K C+ C ++++ L HK + T C CG +++
Sbjct: 4 HHHHHSHMTHSDKPYK-----CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRP 58
Query: 496 YVLRNH 501
L+ H
Sbjct: 59 ANLKTH 64
Score = 30.9 bits (71), Expect = 0.15
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++CN CG+ F +L +H R+H
Sbjct: 43 EKPYRCNICGAQFNRPANLKTH-TRIH 68
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 48.3 bits (116), Expect = 8e-08
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHV-EAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTH 248
++C+VC + + +H + +K C C K F+ + H
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 47.9 bits (115), Expect = 1e-07
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGR--FKCPICGKHIRHKQTFDDHMNMHSG 278
+C+VC + +++ S H T + + CP C K K H+ +
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 40.6 bits (96), Expect = 4e-05
Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 329 ERSHSS--IFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLN 386
E + ++C++C ++ ++I RH H + + + C C F K ++
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRN----VKVYPCPFCFKEFTRKDNMT 57
Query: 387 SHINRLHKL 395
+H+ +HK+
Sbjct: 58 AHVKIIHKI 66
Score = 40.2 bits (95), Expect = 5e-05
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 28/86 (32%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYK 426
E ++C C + + H ++ N K
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRH---------------------YVTSHK-------RNVK 39
Query: 427 AWKCEKCDMRFVTNKNLKRHMKVHEK 452
+ C C F N+ H+K+ K
Sbjct: 40 VYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 461 CNECGKQYKWESFLQKHKKICTTT------CKSCGKRYSSIYVLRNHVK 503
C C + Y S +H C C K ++ + HVK
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 36.0 bits (84), Expect = 0.002
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 429 KCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKI 480
+C+ C + N RH K RN+ C C K++ + + H KI
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHK-RNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 35.2 bits (82), Expect = 0.004
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHV-NGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVH 220
GE+ ++C+ C + +H +K + C C +F R+ ++ HV+ +H
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 34.5 bits (80), Expect = 0.006
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 276 HSGDVKYTCTYCEKSFLYKKSLKHHL--FVHSSEFTSKCSVCDRLY-KSDYLRRKHERSH 332
G+ Y C C + + + + H + C C + + + D + H +
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTA-HVKII 63
Query: 333 SSI 335
I
Sbjct: 64 HKI 66
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 47.9 bits (115), Expect = 1e-07
Identities = 13/60 (21%), Positives = 19/60 (31%)
Query: 254 FKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
KC C K H +H D + C YC +L H+ + + S
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 44.0 bits (105), Expect = 3e-06
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTH 248
KC C + +L+ H E +H +P KC C S L H
Sbjct: 8 HPEKCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 38.2 bits (90), Expect = 3e-04
Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 30/84 (35%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYK 426
P +C++C + K L H +R H +
Sbjct: 7 GHPEKCSECSYSCSSKAALRIH---------------------ER-------IHCTD--R 36
Query: 427 AWKCEKCDMRFVTNKNLKRHMKVH 450
+KC C NL +HMK
Sbjct: 37 PFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 37.1 bits (87), Expect = 9e-04
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 276 HSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSH 332
S C+ C S K +L+ H +H ++ KC+ C K KH +
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 32.5 bits (75), Expect = 0.038
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 461 CNECGKQYKWESFLQKHKKICTT----TCKSCGKRYSSIYVLRNHVK 503
C+EC ++ L+ H++I T C C L H+K
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 30.2 bits (69), Expect = 0.23
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 336 FQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLH 393
+C C S+ +R H +H T+RPF+CN C + +L+ H+ +
Sbjct: 10 EKCSECSYSCSSKAALRIHER-IHC-----TDRPFKCNYCSFDTKQPSNLSKHM-KKF 60
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 47.5 bits (114), Expect = 3e-07
Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 7/88 (7%)
Query: 191 HLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLKLKP--CKCEVCGKSFSNNSTLKVHSTTH 248
C + + LK H H KP C + CG F+ + L H H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 249 ADQGRFKCPICGKHIRHKQTFDDHMNMH 276
F+C C + DH+ +H
Sbjct: 61 TGHRPFQCQKCDRAFSRS----DHLALH 84
Score = 46.8 bits (112), Expect = 4e-07
Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 32/116 (27%)
Query: 220 HLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGD 279
C CGK+++ +S LK H + H+G+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAH----------------------------LRTHTGE 33
Query: 280 VKYTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLY-KSDYLRRKHERSH 332
Y C + C F L H H+ +C CDR + +SD+L H + H
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL-ALHMKRH 88
Score = 39.0 bits (92), Expect = 2e-04
Identities = 26/116 (22%), Positives = 33/116 (28%), Gaps = 36/116 (31%)
Query: 276 HSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCD---RLYKSDYLRRKHERSH 332
+ C K++ LK HL H+ E C + +SD L R H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTR-HYRKH 60
Query: 333 SSIFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSH 388
+ RPFQC C F HL H
Sbjct: 61 TG--------------------------------HRPFQCQKCDRAFSRSDHLALH 84
Score = 39.0 bits (92), Expect = 3e-04
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLHK----LKLNCVHCQAIFTNKQRLNYHILTKHSG 422
CG T+ HL +H+ R H + C F L H KH+G
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRH-YRKHTG 62
Query: 423 PNYKAWKCEKCDMRFVTNKNLKRHMKVH 450
++ ++C+KCD F + +L HMK H
Sbjct: 63 --HRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 36.4 bits (85), Expect = 0.002
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKC--EVCPMKFHRQVSLKKHVEAVHL 221
+ C + + + H+ H K + C + C KF R L +H H
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYR-KHT 61
Query: 222 KLKPCKCEVCGKSFSNNSTLKVHSTTH 248
+P +C+ C ++FS + L +H H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 31.7 bits (73), Expect = 0.10
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 419 KHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCN--ECGKQYKWESFL 474
K + C + + +LK H++ H EK C+ CG ++ L
Sbjct: 1 KRTAT--HTCDYAGCGKTYTKSSHLKAHLRTHTGEK-----PYHCDWDGCGWKFARSDEL 53
Query: 475 QKHKKICTT----TCKSCGKRYSSIYVLRNHVK 503
+H + T C+ C + +S L H+K
Sbjct: 54 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 48.0 bits (113), Expect = 3e-07
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 3/86 (3%)
Query: 278 GDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSHS-SIF 336
Y C C H + + C C + S L+++HE
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAA--VCPYCSLRFFSPELKQEHESKCEYKKL 70
Query: 337 QCRICDKILSNIQGIRRHMENMHNSD 362
C C + + I RH +HN +
Sbjct: 71 TCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 42.2 bits (98), Expect = 3e-05
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 227 KCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTY 286
+C +C S+ H + CP C + +H + K TC
Sbjct: 18 QCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLE 74
Query: 287 CEKSFLYKKSLKHH 300
C ++F S+ H
Sbjct: 75 CMRTFKSSFSIWRH 88
Score = 41.8 bits (97), Expect = 4e-05
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 306 SEFTSKCSVCDRLYKSDYLRRKHERSHSSIFQCRICDKILSNIQGIRRHMENMHNSDKDN 365
++ +C +C+ S + HER + C C + + + H
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESK-------C 65
Query: 366 TERPFQCNDCGSTFRLKRHLNSHINRLH 393
+ C +C TF+ + H +H
Sbjct: 66 EYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 41.0 bits (95), Expect = 9e-05
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 423 PNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKICT 482
N + ++C C+ + + H ++ + C C ++ Q+H+ C
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCRNA-----AVCPYCSLRFFSPELKQEHESKCE 66
Query: 483 T---TCKSCGKRYSSIYVLRNHVKSCYGQQ 509
TC C + + S + + H + Q
Sbjct: 67 YKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 38.7 bits (89), Expect = 5e-04
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 335 IFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLHK 394
++QCR+C+ LS++ H N+ C C F H ++
Sbjct: 16 VYQCRLCNAKLSSLLEQGSHERLCRNA--------AVCPYCSLRFFSPELKQEHESKCEY 67
Query: 395 LKLNCVHCQAIFTNKQRLNYHILTKHS 421
KL C+ C F + + H + H+
Sbjct: 68 KKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 34.9 bits (79), Expect = 0.012
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 399 CVHCQAIFTNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLD 458
C C A ++ H + A C C +RF + + + H E +
Sbjct: 19 CRLCNAKLSSLLEQGSHERLCRN-----AAVCPYCSLRFFSPELKQEHESKCEYKK---- 69
Query: 459 SSCNECGKQYKWESFLQKHKK 479
+C EC + +K + +H+
Sbjct: 70 LTCLECMRTFKSSFSIWRHQV 90
Score = 32.6 bits (73), Expect = 0.087
Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLKL 223
+ ++C+ C ++ H C C ++F ++H +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCR---NAAVCPYCSLRFFSPELKQEH--ESKCEY 67
Query: 224 KPCKCEVCGKSFSNNSTLKVH 244
K C C ++F ++ ++ H
Sbjct: 68 KKLTCLECMRTFKSSFSIWRH 88
Score = 31.8 bits (71), Expect = 0.16
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 165 ENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVH 220
N C +C + F +++H + K+ C C F S+ +H VH
Sbjct: 40 RNAAVCPYCSLRFFSPELKQEH--ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 46.1 bits (110), Expect = 7e-07
Identities = 27/108 (25%), Positives = 37/108 (34%), Gaps = 27/108 (25%)
Query: 226 CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
C E CGK+F ++ LKVH +H Q ++CP G
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEG------------------------- 38
Query: 286 YCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYK-SDYLRRKHERSH 332
C+K F LK H VH+ K C + K + H
Sbjct: 39 -CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 39.9 bits (94), Expect = 1e-04
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 199 CEVCPMKFHRQVSLKKHVEAVHLKLKPCKC--EVCGKSFSNNSTLKVHSTTHADQGRFKC 256
E C F + LK H + H + P +C E C K FS S LK H HA K
Sbjct: 6 FENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 257 PICGKHIRHKQTFDDHMNMH 276
C + T+ ++
Sbjct: 65 DSCSFVGK---TWTLYLKHV 81
Score = 36.4 bits (85), Expect = 0.002
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 398 NCVHCQAIFTNKQRLNYHILTKHSGPNYKAWKC--EKCDMRFVTNKNLKRHMKVHEKNRN 455
+ +C F +L H + H+ ++C E CD RF LKRH KVH
Sbjct: 5 HFENCGKAFKKHNQLKVHQFS-HTQQ--LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 456 MLDSSCNECGKQYKWESFLQKHKK 479
D SC+ GK + + KH
Sbjct: 62 KKDDSCSFVGKTW---TLYLKHVA 82
Score = 31.8 bits (73), Expect = 0.081
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 19/85 (22%)
Query: 430 CEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNE--CGKQYKWESFLQKHKKICT--- 482
E C F + LK H H + C C K++ S L++H+K+
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQL-----PYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 483 ----TTCKSCGKRYSSIYVLRNHVK 503
+C GK ++ HV
Sbjct: 61 CKKDDSCSFVGKTWTL---YLKHVA 82
Score = 29.1 bits (66), Expect = 0.69
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 12/81 (14%)
Query: 146 KSFTK----KLHTRKYNDKFSFGENKFKCQF--CPMWFEQRGKRRKHVNGVHLKIKRFKC 199
K+F K K+H + + ++C C F + ++H VH K
Sbjct: 11 KAFKKHNQLKVHQFSHT-----QQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKD 64
Query: 200 EVCPMKFHRQVSLKKHVEAVH 220
+ C KHV H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
Score = 28.7 bits (65), Expect = 0.89
Identities = 21/117 (17%), Positives = 35/117 (29%), Gaps = 38/117 (32%)
Query: 282 YTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSV--CDRLY-KSDYLRRKHERSHSSIF 336
Y C + C K+F LK H F H+ + +C CD+ + L+R HE+ H+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKR-HEKVHAG-- 58
Query: 337 QCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLH 393
+ + C + H+ H
Sbjct: 59 ------------------------------YPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 28.0 bits (63), Expect = 1.6
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 460 SCNECGKQYKWESFLQKHKKICTT----TCK--SCGKRYSSIYVLRNHVK 503
CGK +K + L+ H+ T C C KR+S L+ H K
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 54
Score = 27.2 bits (61), Expect = 3.6
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 195 KRFKC--EVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVC---GKSFSNNSTLKVHSTTH 248
++C E C +F LK+H E VH K + C GK+++ LK + H
Sbjct: 30 LPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCKKDDSCSFVGKTWT--LYLKHVAECH 85
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 47.1 bits (111), Expect = 8e-07
Identities = 16/89 (17%), Positives = 24/89 (26%), Gaps = 4/89 (4%)
Query: 189 GVHLKIKRFKCEVCPMKFHRQVSLKKHV----EAVHLKLKPCKCEVCGKSFSNNSTLKVH 244
+ +F+C+ C + V L H+ + S +L
Sbjct: 12 SIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEM 71
Query: 245 STTHADQGRFKCPICGKHIRHKQTFDDHM 273
Q KC CG Q HM
Sbjct: 72 EGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
Score = 45.1 bits (106), Expect = 4e-06
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHC---QAIFTNKQRLNYHILTKHSGP 423
F+C DC + + L H+N + + +K R + +
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 424 NYKAWKCEKCDMRFVTNKNLKRHMK 448
K KC C F + ++L HM
Sbjct: 77 AQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 43.6 bits (102), Expect = 1e-05
Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 5/103 (4%)
Query: 236 SNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNM-----HSGDVKYTCTYCEKS 290
S+ S+ K++ + +F+C C HMN S
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 291 FLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSHS 333
K+SL ++ KC C ++S H
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 42.8 bits (100), Expect = 2e-05
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 164 GENKFKCQFCPMWFEQRGKRRKHVNGV-HLKIKRFKCEVCPMKFHRQVSLKKHV--EAVH 220
G +KF+C+ C ++ + H+N H + + + K + + + E
Sbjct: 16 GASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKE 75
Query: 221 LKLKPCKCEVCGKSFSNNSTLKVH 244
K KC CG SF + L VH
Sbjct: 76 DAQKVLKCMYCGHSFESLQDLSVH 99
Score = 40.5 bits (94), Expect = 1e-04
Identities = 14/122 (11%), Positives = 36/122 (29%), Gaps = 27/122 (22%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERS 331
+ ++ +G K+ C C ++ L H+ + + D
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETD--------------- 53
Query: 332 HSSIFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINR 391
+ + K++ ++ +C CG +F + L+ H+ +
Sbjct: 54 -----NNNPKRWSKPRKRSLLEMEG------KEDAQKVLKCMYCGHSFESLQDLSVHMIK 102
Query: 392 LH 393
Sbjct: 103 TK 104
Score = 39.0 bits (90), Expect = 5e-04
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 6/86 (6%)
Query: 425 YKAWKCEKCDMRFVTNKNLKRHMKV--HEKNRNMLDSSCNECGKQYKWESFLQKHKKICT 482
++C+ C + T L HM H ++ N + N + L + +
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 483 T----TCKSCGKRYSSIYVLRNHVKS 504
C CG + S+ L H+
Sbjct: 77 AQKVLKCMYCGHSFESLQDLSVHMIK 102
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 44.7 bits (105), Expect = 1e-06
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 253 RFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSE 307
++ C CG + H+ H+ Y CTYC SF K +L H+ +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 43.2 bits (101), Expect = 4e-06
Identities = 17/55 (30%), Positives = 20/55 (36%)
Query: 227 KCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVK 281
CE CG S LK H TH D + C C + K HM + K
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 35.5 bits (81), Expect = 0.002
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 196 RFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHA 249
++ CE C ++ + LKKH+ H ++P C C SF L H + A
Sbjct: 1 KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 34.7 bits (79), Expect = 0.004
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 281 KYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSHS 333
KY C C LK H+ H+ C+ C+ +K+ KH +S +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 31.6 bits (71), Expect = 0.049
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 461 CNECGKQYKWESFLQKHKKICTT----TCKSCGKRYSSIYVLRNHVKSCYGQQK 510
C ECG + K S L+KH + T C C + + L H+KS +K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 31.2 bits (70), Expect = 0.071
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 429 KCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKICT 482
CE+C +R LK+H++ H R C C +K + L KH K
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPY---HCTYCNFSFKTKGNLTKHMKSKA 53
Score = 27.4 bits (60), Expect = 1.6
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 336 FQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHI 389
+ C C +++H+ RP+ C C +F+ K +L H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT------HTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 25.4 bits (55), Expect = 8.2
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 399 CVHCQAIFTNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVH 450
C C L HI T H+ + + C C+ F T NL +HMK
Sbjct: 4 CEECGIRXKKPSMLKKHIRT-HTDV--RPYHCTYCNFSFKTKGNLTKHMKSK 52
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 45.1 bits (108), Expect = 1e-06
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 211 SLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFD 270
S + E + + KC+ CGKSFS++S L H TH + +KC CGK +
Sbjct: 5 SSGRS-EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLI 63
Query: 271 DHMNMHSG 278
H +H+G
Sbjct: 64 GHHRVHTG 71
Score = 43.2 bits (103), Expect = 5e-06
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTH 248
+R+KC+ C F L KH H KP KC+ CGK+F S L H H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 39.7 bits (94), Expect = 1e-04
Identities = 19/70 (27%), Positives = 30/70 (42%)
Query: 238 NSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSL 297
+ + ++ R+KC CGK H H H+G+ Y C C K+F+ + L
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 298 KHHLFVHSSE 307
H VH+
Sbjct: 63 IGHHRVHTGS 72
Score = 36.3 bits (85), Expect = 0.002
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 11/66 (16%)
Query: 442 NLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKICTT----TCKSCGKRYSSI 495
+ R + C+ECGK + S L KH++ T C CGK +
Sbjct: 5 SSGRSEWQQRERR-----RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQR 59
Query: 496 YVLRNH 501
L H
Sbjct: 60 SHLIGH 65
Score = 34.0 bits (79), Expect = 0.013
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKICT 482
+ +KC++C F + +L +H + H EK C+ECGK + S L H ++ T
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYK-----CDECGKAFIQRSHLIGHHRVHT 70
Score = 32.0 bits (74), Expect = 0.065
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C++CG F + HL H +R+H
Sbjct: 44 EKPYKCDECGKAFIQRSHLIGH-HRVH 69
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 43.6 bits (104), Expect = 4e-06
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTH 248
K + C C F R L +H + VH KP KC CGK+FS NS L H H
Sbjct: 13 KPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 39.0 bits (92), Expect = 2e-04
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 28/84 (33%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYT 283
KP C CGK+FS +S L ++H++ H+G+ Y
Sbjct: 13 KPYGCVECGKAFSRSSIL---------------------VQHQRV-------HTGEKPYK 44
Query: 284 CTYCEKSFLYKKSLKHHLFVHSSE 307
C C K+F L +H +H+S
Sbjct: 45 CLECGKAFSQNSGLINHQRIHTSG 68
Score = 35.1 bits (82), Expect = 0.004
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKICT 482
K + C +C F + L +H +VH EK C ECGK + S L H++I T
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEK-----PYKCLECGKAFSQNSGLINHQRIHT 66
Score = 34.8 bits (81), Expect = 0.005
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 461 CNECGKQYKWESFLQKHKKICTT----TCKSCGKRYSSIYVLRNH 501
C ECGK + S L +H+++ T C CGK +S L NH
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 33.2 bits (77), Expect = 0.019
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERS 331
+HSG+ Y C C K+F L H VH+ E KC C + + + H+R
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Query: 332 HS 333
H+
Sbjct: 65 HT 66
Score = 32.4 bits (75), Expect = 0.036
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C +CG F L +H R+H
Sbjct: 40 EKPYKCLECGKAFSQNSGLINH-QRIH 65
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 44.2 bits (105), Expect = 5e-06
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 193 KIKRFKCEV--CPMKFHRQVSLKKHVEAVHLKLKP--CKCEVCGKSFSNNSTLKVHSTTH 248
K + C+ C + + LK H+ H KP C E C F+ + L H H
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 249 ADQGRFKCPICGKHIRHKQTFDDHMNMH 276
F+C +C + HM H
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 41.1 bits (97), Expect = 7e-05
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 195 KRFKC--EVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHAD 250
K +KC E C +F R L +H H KP +C VC +SFS + L +H H +
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 38.8 bits (91), Expect = 4e-04
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 10/99 (10%)
Query: 359 HNSDKDNTERPFQCN--DCGSTFRLKRHLNSHINRLHK----LKLNCVHCQAIFTNKQRL 412
+ R C+ C + HL +H+ R H K C F L
Sbjct: 5 SSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARSDEL 63
Query: 413 NYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVHE 451
H H+G K ++C C+ F + +L HMK H+
Sbjct: 64 TRHYRK-HTG--AKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 34.1 bits (79), Expect = 0.015
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 268 TFDDHMNMHSGDVKYTCT--YCEKSFLYKKSLKHHLFVHSSEFTSKCSV--CDRLY-KSD 322
+ + C C K + LK HL H+ E KC+ CD + +SD
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 323 YLRRKHERSHSSI--FQCRICDK 343
L R H R H+ FQC +C++
Sbjct: 62 ELTR-HYRKHTGAKPFQCGVCNR 83
Score = 33.8 bits (78), Expect = 0.022
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 401 HCQAIFTNKQRLNYHILTKHSGPNYKAWKC--EKCDMRFVTNKNLKRHMKVH--EKNRNM 456
C ++T L H+ T H+G K +KC E CD RF + L RH + H K
Sbjct: 22 GCTKVYTKSSHLKAHLRT-HTG--EKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP--- 75
Query: 457 LDSSCNECGKQYKWESFLQKHKKI 480
C C + + L H K
Sbjct: 76 --FQCGVCNRSFSRSDHLALHMKR 97
Score = 29.9 bits (68), Expect = 0.45
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
Query: 429 KCEK--CDMRFVTNKNLKRHMKVH--EKNRNMLDSSCN--ECGKQYKWESFLQKHKKICT 482
C+ C + + +LK H++ H EK C C ++ L +H + T
Sbjct: 17 YCDYPGCTKVYTKSSHLKAHLRTHTGEK-----PYKCTWEGCDWRFARSDELTRHYRKHT 71
Query: 483 T----TCKSCGKRYSSIYVLRNHVK 503
C C + +S L H+K
Sbjct: 72 GAKPFQCGVCNRSFSRSDHLALHMK 96
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 42.5 bits (101), Expect = 7e-06
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHS 245
+ F CEVC F RQ LK+H H KP C +C ++F+ L H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 42.5 bits (101), Expect = 8e-06
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMN-MHSGDV 280
+ CEVC ++F+ LK H +H ++ + C +C + + H +HSG++
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 35.5 bits (83), Expect = 0.002
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P+ C C F + L H ++H
Sbjct: 28 EKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 33.2 bits (77), Expect = 0.016
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKK 479
+++ CE C F ++LKRH + H EK C C + + L +H +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK-----PYPCGLCNRAFTRRDLLIRHAQ 51
Score = 32.5 bits (75), Expect = 0.025
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 461 CNECGKQYKWESFLQKHKKICTT----TCKSCGKRYSSIYVLRNHVK 503
C C + + + L++H + T C C + ++ +L H +
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 32.1 bits (74), Expect = 0.041
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 282 YTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLY-KSDYLRRKHERSHS 333
+ C C ++F ++ LK H H++E C +C+R + + D L R ++ HS
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 30.5 bits (70), Expect = 0.13
Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 11/61 (18%)
Query: 368 RPFQCNDCGSTFRLKRHLNSHINRLH------KLKLNCVHCQAIFTNKQRLNYHILTKHS 421
R F C C F + HL H R H C C FT + L H HS
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY-RSHTNEKPYP----CGLCNRAFTRRDLLIRHAQKIHS 55
Query: 422 G 422
G
Sbjct: 56 G 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 8e-06
Identities = 62/433 (14%), Positives = 140/433 (32%), Gaps = 105/433 (24%)
Query: 85 ELYTPDFFQSLFGFSIFDCQDSE--WRDVLKKKQ--GVLHLKANGSRIHYPSEKTDVKQL 140
++ F + FDC+D + + +L K++ ++ K S KQ
Sbjct: 23 SVFEDAFVDN------FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 141 RLDKMKSFTKKLHTRKYN---DKFSFGENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRF 197
+ ++ F +++ Y E + M+ EQR + N + K
Sbjct: 77 EM--VQKFVEEVLRINYKFLMSPIKT-EQRQPSMMTRMYIEQRDRLY---NDNQVFAKYN 130
Query: 198 KCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEV------CGKSFSNNSTLKVHSTTHADQ 251
V ++ + + L++ + L+L+P K + GK++ + Q
Sbjct: 131 ---VSRLQPYLK--LRQAL----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKV----Q 177
Query: 252 GRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSK 311
+ I ++++ + + + M ++ + ++ + ++ + ++
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEM----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 312 CSVCDRLYKSDYLRRKHERS--------HSSI-----FQCRIC----DKILSNI--QGIR 352
RL KS + +E ++ C+I K +++
Sbjct: 234 LR---RLLKS----KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 353 RHMENMHNSD---KDNTERPF-QCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTN 408
H+ H+S D + + DC L R + + TN
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLPR-------------------EVLTTN 326
Query: 409 KQRLNYHILTKHSGPN-YKAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQ 467
+RL+ + G + WK + N + + E + N+L+ E K
Sbjct: 327 PRRLSIIAESIRDGLATWDNWK----------HVNCDKLTTIIESSLNVLEP--AEYRKM 374
Query: 468 YKWESFLQKHKKI 480
+ S I
Sbjct: 375 FDRLSVFPPSAHI 387
Score = 39.5 bits (91), Expect = 0.003
Identities = 64/464 (13%), Positives = 133/464 (28%), Gaps = 127/464 (27%)
Query: 92 FQSLFGFSIF-----DCQDSEWRDVLKKKQGVLH--------LKANGSRIHYPSEKTDVK 138
Q F IF +C E VL+ Q +L+ + S I +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPE--TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 139 QLRLDKMKSFTKKL------HTRKYNDKFSFGENKFKCQFCPMWFEQR---------GKR 183
RL K K + L K + F+ C + R
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--------CKILLTTRFKQVTDFLSAAT 285
Query: 184 RKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKH---VEAVHLKLKPCKCEVCGKSFSN--- 237
H++ H + EV + + + + E L P + + +S +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREV--LTTNPRRLSIIAESIRDGLA 342
Query: 238 -------------NSTLKVHSTTHAD----QGRFK-CPICGKHIRHKQTFDDHMNMHS-- 277
+ ++ S + + F + F ++ +
Sbjct: 343 TWDNWKHVNCDKLTTIIES-SLNVLEPAEYRKMFDRLSV----------FPPSAHIPTIL 391
Query: 278 -----GDVKYTCTYCEKSFLYKKSL------KHHLFVHSSEFTSKCSVCDRLYKSDYLRR 326
DV + + L+K SL + + + S K K +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV-------KLENEYA 444
Query: 327 KHER--SHSSIFQCRICDKILSNI------QGIRRHMENMHNSDKDNTERPFQCNDCGST 378
H H +I + D ++ I H++N+ + ++ R +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD----- 499
Query: 379 FR-LKRHLNSHINRLHKLKLNCVHCQAIFTNKQRL-NY--HILTKHSGPNYKAWKCEKCD 434
FR L++ ++ +I Q+L Y +I P Y+
Sbjct: 500 FRFLEQ-------KIRHDSTAWNASGSILNTLQQLKFYKPYICDND--PKYERLVNAI-- 548
Query: 435 MRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHK 478
+ F+ ++ ++ + K ++L + + E+ Q +
Sbjct: 549 LDFL--PKIEENL-ICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 34.4 bits (78), Expect = 0.12
Identities = 44/294 (14%), Positives = 90/294 (30%), Gaps = 92/294 (31%)
Query: 272 HMNMHSGDVKYT-----------------CTYCE---KSFLYKKSLKHHLFVHSSE---- 307
HM+ +G+ +Y C + KS L K+ + H + +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 308 --FTSKCSVCDRLYK---SDYLRRKHERSHSSI-FQCRICDKILSNIQGIRRHMENMHNS 361
F + S + + + + LR ++ S I + R + I + + ++N
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR--QPSMMTRMYIEQR-DRLYND 122
Query: 362 ----DKDNTERPFQCND---------------------CGST---------FRLKRHLNS 387
K N R G T ++++ ++
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 388 HINRLHKLKLNCVHC-QAIFTNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTN---KNL 443
I L L + + + Q+L Y I PN+ + +++ + L
Sbjct: 183 KI---FWLNLKNCNSPETVLEMLQKLLYQI-----DPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 444 KRHMKVHEKNRNM--LDSSCNECGKQYKWESFLQKHKKICTTTCKSCGKRYSSI 495
+R +K + L + N W +F K + TT R+ +
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNA----KAWNAFNLSCKILLTT-------RFKQV 277
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP CE+CG F + TLK H H
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYT 283
S + + + C ICG RH QT H+ +H+G +
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 33.6 bits (78), Expect = 0.006
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P+ C CG+ FR + L SH+ R+H
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHL-RIH 34
Score = 32.9 bits (76), Expect = 0.014
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSE 307
G+ Y C C F + ++LK HL +H+
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGS 37
Score = 30.5 bits (70), Expect = 0.074
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVH--EK 452
K + CE C RF + LK H+++H
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSG 38
Score = 26.7 bits (60), Expect = 1.9
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 460 SCNECGKQYKWESFLQKHKKICT 482
C CG +++ L+ H +I T
Sbjct: 13 PCEICGTRFRHLQTLKSHLRIHT 35
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 41.5 bits (97), Expect = 4e-05
Identities = 14/75 (18%), Positives = 18/75 (24%), Gaps = 8/75 (10%)
Query: 190 VHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCK--------CEVCGKSFSNNSTL 241
+ + C F L HV H+ C GKSF L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 242 KVHSTTHADQGRFKC 256
H H +
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 40.7 bits (95), Expect = 7e-05
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 21/96 (21%)
Query: 219 VHLKLKPCKCEVCGKSFSNNSTLKVH-STTHADQGRFKCPICGKHIRHKQTFDDHMNMHS 277
+ + C ++FS L H + H +C
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE--------------- 63
Query: 278 GDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
C KSF K L +H+ VH+ E + S
Sbjct: 64 -----ECPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 34.9 bits (80), Expect = 0.009
Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 13/77 (16%)
Query: 364 DNTERPFQCNDCGSTFRLKRHLNSHINRLHK----------LKLNCVHCQAIFTNKQRLN 413
D + C TF L +H+ H C F K +L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 414 YHILTKHSGPNYKAWKC 430
HI H+G K+
Sbjct: 80 NHIRV-HTG--EKSGPS 93
Score = 34.6 bits (79), Expect = 0.012
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 399 CVHCQAIFTNKQRLNYHILTKHSGPNYKA-----WK-CEKCDMRFVTNKNLKRHMKVH 450
C F+ L H+ +H G + W+ C + F L H++VH
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Score = 29.9 bits (67), Expect = 0.53
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 336 FQCRICDKILSNIQGIRRHMENMHNSDKDNTE---RPFQCNDCGSTFRLKRHLNSHINRL 392
+ CD+ S + + H+ H + +C G +F+ K L +HI R+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-RV 84
Query: 393 H 393
H
Sbjct: 85 H 85
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 41.8 bits (97), Expect = 7e-05
Identities = 14/74 (18%), Positives = 25/74 (33%)
Query: 287 CEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSHSSIFQCRICDKILS 346
L + S + L + C +C + S ++H R C +C K +
Sbjct: 52 HNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFT 111
Query: 347 NIQGIRRHMENMHN 360
+ H+ HN
Sbjct: 112 STDSALDHVCKKHN 125
Score = 40.7 bits (94), Expect = 2e-04
Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 16/128 (12%)
Query: 274 NMHSGDVKYTCTY--CEKSFLYKKSLKHHLFVHSSE------FTSKCSVCDRLYKSDYLR 325
++ SG KY + ++ ++H + + L +S YL
Sbjct: 5 DVDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLY 64
Query: 326 RKHERSHSSIFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHL 385
R S F C +C S+ +++H+ TE C C F
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRY--------TEHTKVCPVCKKEFTSTDSA 116
Query: 386 NSHINRLH 393
H+ + H
Sbjct: 117 LDHVCKKH 124
Score = 38.4 bits (88), Expect = 0.001
Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 17/138 (12%)
Query: 358 MHNSDKDNTERPFQCND--CGSTFRLKRHLNSHINRLHKLKL------NCVHCQAIFTNK 409
M SD D+ + + N L+ H + +L +H +
Sbjct: 1 MTESDVDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDES 60
Query: 410 QRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYK 469
L + +K + C C M F ++ +LK+H++ E + C C K++
Sbjct: 61 SYLYRLLASKAISQ----FVCPLCLMPFSSSVSLKQHIRYTEHTK-----VCPVCKKEFT 111
Query: 470 WESFLQKHKKICTTTCKS 487
H C S
Sbjct: 112 STDSALDHVCKKHNICVS 129
Score = 36.1 bits (82), Expect = 0.007
Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
Query: 124 NGSRIHYPSEKTDVKQLRLDKMKSFTKKLHTRKYNDKFSFGENKFKCQFCPMWFEQRGKR 183
+GS+ + + K + L+++K + + +K + P ++
Sbjct: 8 SGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIR----AIVKTLIHNPQLLDESSYL 63
Query: 184 RKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKV 243
+ + I +F C +C M F VSLK+H+ C VC K F++ +
Sbjct: 64 YRLLA--SKAISQFVCPLCLMPFSSSVSLKQHI---RYTEHTKVCPVCKKEFTSTDSALD 118
Query: 244 H 244
H
Sbjct: 119 H 119
Score = 29.1 bits (64), Expect = 1.7
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 167 KFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVH 220
+F C C M F ++H+ C VC +F S HV H
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHI---RYTEHTKVCPVCKKEFTSTDSALDHVCKKH 124
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 38.7 bits (91), Expect = 1e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP C C K+FS+ S L VH THA++
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 32.9 bits (76), Expect = 0.014
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+PF C+ C F K +L H + H
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVH-QQTH 33
Score = 31.4 bits (72), Expect = 0.042
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 276 HSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
SG+ + C+ CEK+F K L H H+ E S S
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 26.0 bits (58), Expect = 3.9
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ C K + +S+L H++
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHA 34
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KPCKC CGK+F S L +H TH D
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 31.4 bits (72), Expect = 0.052
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P +C +CG F K L H R H
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMH-QRTH 35
Score = 31.4 bits (72), Expect = 0.054
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ CT C K+F +K L H H + S S
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 29.1 bits (66), Expect = 0.32
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK + W+S L H++
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHV 36
Score = 28.7 bits (65), Expect = 0.41
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + KC CGK K H H D +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 39.2 bits (92), Expect = 2e-04
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 204 MKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHI 263
M+ H +L +V ++ C E C + FS + L H H Q F+C IC ++
Sbjct: 1 MEPHPMNNLLNYVV-PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Query: 264 RHKQTFDDHMNMHS 277
H+ H+
Sbjct: 60 SRSDHLTTHIRTHT 73
Score = 38.8 bits (91), Expect = 2e-04
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 195 KRFKC--EVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTH 248
+ + C E C +F R L +H+ +H KP +C +C ++FS + L H TH
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 30.7 bits (70), Expect = 0.17
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 417 LTKHSGPNYKAWKC--EKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFL 474
L + P + + C E CD RF + L RH+++H + C C + + L
Sbjct: 9 LLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPF---QCRICMRNFSRSDHL 65
Query: 475 QKHKKICT 482
H + T
Sbjct: 66 TTHIRTHT 73
Score = 30.4 bits (69), Expect = 0.18
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 32/86 (37%)
Query: 367 ERPFQCN--DCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPN 424
RP+ C C F L HI H+G
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIR----------------------------IHTG-- 46
Query: 425 YKAWKCEKCDMRFVTNKNLKRHMKVH 450
K ++C C F + +L H++ H
Sbjct: 47 QKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 30.4 bits (69), Expect = 0.19
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 282 YTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLY-KSDYLRRKHERSHS 333
Y C C++ F L H+ +H+ + +C +C R + +SD+L H R+H+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL-TTHIRTHT 73
Score = 30.0 bits (68), Expect = 0.29
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 164 GENKFKC--QFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHV 216
+ C + C F + + +H+ +H K F+C +C F R L H+
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 28.0 bits (63), Expect = 1.3
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 325 RRKHERSHSSIFQCRI--CDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLK 382
+ + C + CD+ S + RH+ +H ++PFQC C F
Sbjct: 9 LLNYVVPKMRPYACPVESCDRRFSRSDELTRHIR-IHTG-----QKPFQCRICMRNFSRS 62
Query: 383 RHLNSHINR 391
HL +HI
Sbjct: 63 DHLTTHIRT 71
Score = 25.7 bits (57), Expect = 8.2
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 435 MRFVTNKNLKRHMKVHEKNRNMLDSSCN--ECGKQYKWESFLQKHKKICTT----TCKSC 488
M NL ++ + +C C +++ L +H +I T C+ C
Sbjct: 1 MEPHPMNNLLNYVVPKMRP-----YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRIC 55
Query: 489 GKRYSSIYVLRNHVK 503
+ +S L H++
Sbjct: 56 MRNFSRSDHLTTHIR 70
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 39.3 bits (91), Expect = 2e-04
Identities = 18/72 (25%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
Query: 211 SLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFD 270
S K + +HL + KC CG F STL T C C K + +
Sbjct: 5 SSGKR-QKIHLGDRSQKCSKCGIIFIRRSTLSRRKT-------PMCEKCRKDSCQEAALN 56
Query: 271 DHMNMHSGDVKY 282
SG
Sbjct: 57 KDEGNESGKKTS 68
Score = 37.7 bits (87), Expect = 6e-04
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 8/59 (13%)
Query: 190 VHLKIKRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTH 248
+HL + KC C + F R+ +L + K CE C K + L
Sbjct: 12 IHLGDRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEAALNKDEGNE 62
Score = 31.9 bits (72), Expect = 0.054
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 268 TFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRK 327
+ +H GD C+ C F+ + + S T C C + + K
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALNK 57
Query: 328 HERSHS 333
E + S
Sbjct: 58 DEGNES 63
Score = 31.9 bits (72), Expect = 0.063
Identities = 14/72 (19%), Positives = 19/72 (26%), Gaps = 7/72 (9%)
Query: 239 STLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLK 298
+ H KC CG + T S C C K + +L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALN 56
Query: 299 HHLFVHSSEFTS 310
S + TS
Sbjct: 57 KDEGNESGKKTS 68
Score = 30.4 bits (68), Expect = 0.21
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 442 NLKRHMKVH--EKNRNMLDSSCNECGKQYKWESFLQKHKKICTTTCKSCGKRYSSIYVLR 499
+ + K+H ++++ C++CG + S L + K T C+ C K L
Sbjct: 5 SSGKRQKIHLGDRSQK-----CSKCGIIFIRRSTLSRRK---TPMCEKCRKDSCQEAALN 56
Query: 500 NH 501
Sbjct: 57 KD 58
Score = 29.6 bits (66), Expect = 0.38
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKHKKICT 482
++ KC KC + F+ L R C +C K E+ L K + +
Sbjct: 17 RSQKCSKCGIIFIRRSTLSRRKT----------PMCEKCRKDSCQEAALNKDEGNES 63
Score = 26.5 bits (58), Expect = 5.3
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 160 KFSFGENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKH 215
K G+ KC C + F +R + K CE C ++ +L K
Sbjct: 11 KIHLGDRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEAALNKD 58
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 219 VHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
+ K KC+VCGK FS +S L+ H H +
Sbjct: 6 SGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.035
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+ ++C+ CG F HL +H R+H
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTH-QRVH 35
Score = 28.6 bits (65), Expect = 0.39
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ G+ Y C C K F L+ H VH+ E S S
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.65
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ CGK++ S LQ H+++ T
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHT 36
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 217 EAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
+ KP +C CGKSFS + L H TH +
Sbjct: 4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 32.9 bits (76), Expect = 0.016
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ G+ Y C+ C KSF L H H+ E S S
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 32.1 bits (74), Expect = 0.024
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P+QC++CG +F L H H
Sbjct: 10 EKPYQCSECGKSFSGSYRLTQH-WITH 35
Score = 27.5 bits (62), Expect = 1.2
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ECGK + L +H T
Sbjct: 15 CSECGKSFSGSYRLTQHWITHT 36
Score = 26.7 bits (60), Expect = 1.9
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + ++C CGK H H+ + +
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 37.5 bits (88), Expect = 3e-04
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KCE CG F + L+ H H
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIH 34
Score = 32.1 bits (74), Expect = 0.026
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C CG+ F HL +H+ +H
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHV-LIH 34
Score = 30.2 bits (69), Expect = 0.11
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSE 307
G+ Y C C F+ L+ H+ +H+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGS 37
Score = 30.2 bits (69), Expect = 0.13
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVH 450
K +KCE C RFV +L+ H+ +H
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIH 34
Score = 27.1 bits (61), Expect = 1.3
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C CG ++ + L+ H I T
Sbjct: 14 CETCGARFVQVAHLRAHVLIHT 35
Score = 26.3 bits (59), Expect = 2.4
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYT 283
S + + +KC CG H+ +H+G +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KC+VC KSF S+L VH H
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 31.7 bits (73), Expect = 0.041
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C KSF Y SL H +H+ E S S
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.053
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C+ C +FR L H R+H
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVH-QRIH 35
Score = 29.8 bits (68), Expect = 0.16
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ C K +++ S L H++I T
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHT 36
Score = 27.1 bits (61), Expect = 1.7
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + +KC +C K R+ + H +H+G+ +
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
K KC C K+F+ +S+L VH H
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 32.1 bits (74), Expect = 0.030
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G + C C+K+F SL H +H+ E S S
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.030
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
++ F+CN+C TF L H R+H
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVH-QRIH 35
Score = 27.5 bits (62), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNEC K + S L H++I T
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHT 36
Score = 25.5 bits (57), Expect = 5.1
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ A + FKC C K + H +H+G+ +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KC++CGKSF S L HS H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 32.5 bits (75), Expect = 0.021
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+PF+C+ CG +F + LN H + +H
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRH-SMVH 35
Score = 30.9 bits (71), Expect = 0.064
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ + C C KSF + L H VH++E S S
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.23
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ CGK + S L +H + T
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHT 36
Score = 29.0 bits (66), Expect = 0.32
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 243 VHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + FKC ICGK + + H +H+ + +
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 25.1 bits (56), Expect = 8.8
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 189 GVHLKI----KRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKCE 229
G K FKC++C F + L +H VH KP
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRH-SMVHTAEKPSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP KC CGK+F S+L +H TH+ +
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.021
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++CN+CG FR + L H H
Sbjct: 10 EKPYKCNECGKAFRARSSLAIH-QATH 35
Score = 29.4 bits (67), Expect = 0.21
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K+F + SL H HS E S S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK ++ S L H+ +
Sbjct: 15 CNECGKAFRARSSLAIHQATHS 36
Score = 26.0 bits (58), Expect = 3.6
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + +KC CGK R + + H HSG+ +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.2 bits (87), Expect = 4e-04
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 217 EAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTH 248
+ K C+ CGK+F S L++H H
Sbjct: 4 GSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 36.0 bits (84), Expect = 0.001
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ SG+ +TC C K+F Y +L+ H VH E S S
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 30.3 bits (69), Expect = 0.11
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+ C++CG F L H R+H
Sbjct: 10 EKSHTCDECGKNFCYISALRIH-QRVH 35
Score = 27.9 bits (63), Expect = 0.74
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ECGK + + S L+ H+++
Sbjct: 15 CDECGKNFCYISALRIHQRVHM 36
Score = 26.0 bits (58), Expect = 4.3
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + + C CGK+ + H +H G+ +
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 36.8 bits (85), Expect = 5e-04
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPIC 259
K CE+CGK F + L H +H+ + +
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 29.5 bits (66), Expect = 0.27
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 246 TTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYC 287
++ + + C ICGK R + H HSG+ Y+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 28.8 bits (64), Expect = 0.51
Identities = 9/35 (25%), Positives = 10/35 (28%)
Query: 281 KYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVC 315
+ C C K F L H HS E
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 28.4 bits (63), Expect = 0.59
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 363 KDNTERPFQCNDCGSTFRLKRHLNSH 388
T + C CG FR HLN H
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRH 31
Score = 25.3 bits (55), Expect = 7.4
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVHEKNR 454
K CE C F +L RH H +
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEK 39
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.8 bits (86), Expect = 6e-04
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
+ QC++CG F LK HLN H R+H
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQH-QRIH 35
Score = 34.8 bits (81), Expect = 0.003
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
K +C CG+ F+ S L H H
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 31.0 bits (71), Expect = 0.064
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ S + C C + F K L H +H+ E S S
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.47
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ECG+ + +S L +H++I T
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHT 36
Score = 26.4 bits (59), Expect = 3.1
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + +C CG+ K + H +H+G+ +
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 6e-04
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 219 VHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP KC CGK+F +S L H H +
Sbjct: 6 SGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.036
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++CN+CG FR +L +H +H
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTH-QVIH 35
Score = 29.8 bits (68), Expect = 0.15
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK ++ S L H+ I T
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHT 36
Score = 29.4 bits (67), Expect = 0.22
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K+F +L H +H+ E S S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 7.8
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + +KC CGK R H +H+G+ +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 6e-04
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP +C C K+F+ S L VH TH
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTH 35
Score = 32.1 bits (74), Expect = 0.030
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSH 388
E+PF+C++C F K +L H
Sbjct: 10 EKPFECSECQKAFNTKSNLIVH 31
Score = 30.1 bits (69), Expect = 0.14
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ + C+ C+K+F K +L H H+ E S S
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 3.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+EC K + +S L H++ T
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHT 36
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 7e-04
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 219 VHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
+KP C CGK+FS S+L H H +
Sbjct: 6 SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.069
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
+P+ CN+CG F + L +H +H
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTH-QVIH 35
Score = 30.6 bits (70), Expect = 0.10
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G Y C C K+F SL H +H+ E S S
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.36
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK + S L H+ I T
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHT 36
Score = 25.2 bits (56), Expect = 9.0
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTC 284
++ + C CGK + H +H+G+
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 7e-04
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 219 VHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP KC CGK F +NS L H H +
Sbjct: 6 SGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.016
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++CN+CG FR +L+ H R+H
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRH-QRIH 35
Score = 30.2 bits (69), Expect = 0.12
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K F + L H +H+ E S S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.24
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK ++ S+L +H++I T
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHT 36
Score = 26.3 bits (59), Expect = 2.7
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + +KC CGK RH H +H+G+ +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 7e-04
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP +C CGKSFS NS L VH H
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIH 35
Score = 31.0 bits (71), Expect = 0.064
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P +C +CG +F L H R+H
Sbjct: 10 EKPHECRECGKSFSFNSQLIVH-QRIH 35
Score = 31.0 bits (71), Expect = 0.076
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ + C C KSF + L H +H+ E S S
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 27.1 bits (61), Expect = 1.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK + + S L H++I T
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHT 36
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 7e-04
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 219 VHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP +C CGK+F++ S L H H +
Sbjct: 6 SGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.052
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 271 DHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K+F + +L H +H+ E S S
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.083
Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C +CG F + +L +H ++H
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTH-QKIH 35
Score = 26.3 bits (59), Expect = 2.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK + S L H+KI T
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHT 36
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 7e-04
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP C CGK+FS+ S L +H TH
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 31.8 bits (73), Expect = 0.034
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P+ C++CG F K +L H R H
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIH-MRTH 35
Score = 31.0 bits (71), Expect = 0.071
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C+ C K+F K L H+ HS E S S
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ECGK + +S+L H + +
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHS 36
Score = 26.4 bits (59), Expect = 3.4
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ A + + C CGK K HM HSG+ +
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 36.4 bits (85), Expect = 7e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
K KC C FS S+L++H H
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVH 35
Score = 33.7 bits (78), Expect = 0.008
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ G+ + C C+ F SL+ H VH E S S
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.16
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+ ++C +C F L H +H
Sbjct: 10 EKTWKCRECDMCFSQASSLRLH-QNVH 35
Score = 28.7 bits (65), Expect = 0.43
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + +KC C + H N+H G+ +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVH 450
K WKC +CDM F +L+ H VH
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVH 35
Score = 27.5 bits (62), Expect = 1.2
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C EC + S L+ H+ +
Sbjct: 15 CRECDMCFSQASSLRLHQNVHV 36
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 8e-04
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 219 VHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP KCE CGK ++ L +H H +
Sbjct: 6 SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 31.7 bits (73), Expect = 0.034
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ S + Y C C K + + +L H VH E TS S
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 31.3 bits (72), Expect = 0.052
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C DCG + + +L+ H R+H
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMH-QRVH 35
Score = 29.0 bits (66), Expect = 0.37
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C +CGK Y L H+++
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHM 36
Score = 25.5 bits (57), Expect = 6.7
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + + +KC CGK + D H +H G+ +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 8e-04
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP +C +CGKSF+ S L VH H
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIH 35
Score = 31.0 bits (71), Expect = 0.064
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C+ CG +F K L+ H ++H
Sbjct: 10 EKPYECSICGKSFTKKSQLHVH-QQIH 35
Score = 29.8 bits (68), Expect = 0.16
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C+ C KSF K L H +H+ E S S
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 7.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ CGK + +S L H++I T
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHT 36
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 36.3 bits (85), Expect = 9e-04
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
P +C CGK FS L H TH
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTH 35
Score = 31.3 bits (72), Expect = 0.052
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSH 388
E P++C +CG F K L SH
Sbjct: 10 ENPYECCECGKVFSRKDQLVSH 31
Score = 27.8 bits (63), Expect = 0.88
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK + + L H+K +
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHS 36
Score = 26.7 bits (60), Expect = 2.3
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSE 307
+ +G+ Y C C K F K L H HS +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 217 EAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
+ +P KC CGK F S L H H+ +
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 33.7 bits (78), Expect = 0.008
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
ERPF+CN+CG F + HL H RLH
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGH-LRLH 35
Score = 32.5 bits (75), Expect = 0.019
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ SG+ + C C K F + L HL +HS E +S S
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 28.3 bits (64), Expect = 0.60
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK + S L H ++ +
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHS 36
Score = 27.1 bits (61), Expect = 1.5
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + + FKC CGK + H+ +HS + +
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KC CGK FS S L VH H
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLH 35
Score = 31.7 bits (73), Expect = 0.034
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+PF+C +CG F + LN H ++LH
Sbjct: 10 EKPFKCVECGKGFSRRSALNVH-HKLH 35
Score = 31.0 bits (71), Expect = 0.059
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 271 DHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ + C C K F + +L H +H+ E S S
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK + S L H K+ T
Sbjct: 15 CVECGKGFSRRSALNVHHKLHT 36
Score = 26.3 bits (59), Expect = 3.0
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + FKC CGK + + H +H+G+ +
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KCE CGK F NS H +H
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 31.4 bits (72), Expect = 0.043
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+PF+C +CG F SH R H
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSH-QRSH 35
Score = 30.6 bits (70), Expect = 0.077
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ SG+ + C C K F H HS E S S
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.4
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK + S H++ +
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHS 36
Score = 26.4 bits (59), Expect = 3.0
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + + FKC CGK H HSG+ +
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP +CE CGK F+ NS L H H
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 32.9 bits (76), Expect = 0.013
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+PFQC +CG F HL+SH R+H
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSH-QRVH 35
Score = 29.8 bits (68), Expect = 0.17
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 271 DHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ SG+ + C C K F L H VH+ E S S
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 26.4 bits (59), Expect = 2.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK++ S L H+++ T
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHT 36
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KCE CGK F+ NS L H H
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 31.7 bits (73), Expect = 0.038
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+PF+C +CG F L+SH R+H
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSH-QRVH 35
Score = 31.0 bits (71), Expect = 0.070
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 271 DHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ SG+ + C C K F L H VH+ E S S
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK++ S L H+++ T
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHT 36
Score = 25.6 bits (57), Expect = 5.2
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + + FKC CGK H +H+G+ +
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
P KC C KSFS L VH H
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 34.1 bits (79), Expect = 0.005
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G Y C+ CEKSF K L H +H+ E S S
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 30.6 bits (70), Expect = 0.096
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
P++C+ C +F K L H R+H
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVH-QRMH 35
Score = 28.7 bits (65), Expect = 0.47
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ A +KC C K K H MH+ + +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 26.7 bits (60), Expect = 2.3
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C++C K + + L H+++ T
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHT 36
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
K KC CGK FS NS L H H +
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.058
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+ ++CN+CG F L+ H ++H
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQH-QKIH 35
Score = 28.6 bits (65), Expect = 0.52
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ +Y C C K F L H +H+ E S S
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK + S L +H+KI T
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHT 36
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KCE CGK F L H H
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVH 35
Score = 30.2 bits (69), Expect = 0.11
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C +CG F +R L +H + +H
Sbjct: 10 EKPYKCEECGKGFICRRDLYTH-HMVH 35
Score = 29.8 bits (68), Expect = 0.17
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 271 DHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K F+ ++ L H VH+ E S S
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.17
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK + L H + T
Sbjct: 15 CEECGKGFICRRDLYTHHMVHT 36
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP KC CGKSF+ S L++H H +
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 33.3 bits (77), Expect = 0.010
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C+ C KSF +K L+ H H+ E S S
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 31.7 bits (73), Expect = 0.030
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C+DCG +F K L H + H
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIH-QKCH 35
Score = 28.7 bits (65), Expect = 0.43
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C++CGK + W+S L+ H+K T
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHT 36
Score = 26.0 bits (58), Expect = 3.6
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + +KC CGK K H H+G+ +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 0.001
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP +C VCGK+FS+ +L VH H
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 30.9 bits (71), Expect = 0.061
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C+ C K+F +++SL H +HS + S S
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 30.2 bits (69), Expect = 0.14
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C+ CG F ++ L+ H R+H
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVH-QRIH 35
Score = 26.3 bits (59), Expect = 3.3
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ CGK + L H++I +
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHS 36
Score = 25.5 bits (57), Expect = 6.0
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 243 VHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + ++C +CGK H+Q+ H +HSG +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 0.001
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
P C CGK F++ + L +H H
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIH 35
Score = 31.7 bits (73), Expect = 0.035
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E PF C++CG F K +L H ++H
Sbjct: 10 ENPFICSECGKVFTHKTNLIIH-QKIH 35
Score = 31.3 bits (72), Expect = 0.051
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ + C+ C K F +K +L H +H+ E S S
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 26.3 bits (59), Expect = 2.7
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + F C CGK HK H +H+G+ +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 26.3 bits (59), Expect = 3.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ECGK + ++ L H+KI T
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHT 36
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP KC+VCGK+F +S L H + H+ +
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 32.1 bits (74), Expect = 0.026
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C CG FR+ HL H + +H
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQH-HSVH 35
Score = 27.9 bits (63), Expect = 0.76
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K+F L H VHS E S S
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 27.9 bits (63), Expect = 0.84
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C CGK ++ S L +H + +
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHS 36
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP +C+ CGK+FS +L VH H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 31.8 bits (73), Expect = 0.031
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C+ CG F K L HI R+H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHI-RVH 34
Score = 30.2 bits (69), Expect = 0.10
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSE 307
G+ Y C C K+F K SL H+ VH+
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 26.0 bits (58), Expect = 4.1
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C++CGK + + L H ++ T
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHT 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP +C CGKSF S L VH H
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 32.1 bits (74), Expect = 0.026
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C+DCG +F K L+ H R+H
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVH-QRIH 35
Score = 31.4 bits (72), Expect = 0.046
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C+ C KSF+ K L H +H+ E S S
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 25.2 bits (56), Expect = 7.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C++CGK + +S L H++I T
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHT 36
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 0.002
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KC CGK F+ NS L H H
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 31.7 bits (73), Expect = 0.033
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++CN+CG F HL H +H
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRH-RGIH 35
Score = 28.2 bits (64), Expect = 0.60
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK + S L +H+ I T
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHT 36
Score = 27.4 bits (62), Expect = 1.1
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K F L H +H+ E S S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 35.3 bits (82), Expect = 0.002
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
P C CGKSF+ +L VH +
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 31.5 bits (72), Expect = 0.040
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E P+ C CG +F + L H R
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVH-QRSC 34
Score = 29.6 bits (67), Expect = 0.20
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSE 307
G+ Y C C KSF + SL H S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQS 37
Score = 28.4 bits (64), Expect = 0.59
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C +CGK + L H++ C+
Sbjct: 14 CGQCGKSFTQRGSLAVHQRSCS 35
Score = 24.9 bits (55), Expect = 9.3
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSG 278
S + + + C CGK + + H S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQ 36
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
+ +C CGK F S H H
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 31.7 bits (73), Expect = 0.030
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
ER +C+DCG F + H R+H
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQH-RRIH 35
Score = 28.3 bits (64), Expect = 0.63
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ G+ + C+ C K FL + H +H+ E S S
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C++CGK + S +H++I T
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHT 36
Score = 26.3 bits (59), Expect = 3.2
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + +C CGK F H +H+G+ +
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 0.002
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KC CGK F+ NS L H H
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 32.1 bits (74), Expect = 0.028
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++CN+CG F HL +H R+H
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNH-WRIH 35
Score = 29.8 bits (68), Expect = 0.20
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ SG+ Y C C K F L +H +H+ E S S
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.65
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK + S L H +I T
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHT 36
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KC CGK+FS S L H H
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIH 35
Score = 31.3 bits (72), Expect = 0.052
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++CN+CG F L H R+H
Sbjct: 10 EKPYKCNECGKAFSQTSKLARH-QRIH 35
Score = 29.0 bits (66), Expect = 0.28
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K+F L H +H+ E S S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK + S L +H++I T
Sbjct: 15 CNECGKAFSQTSKLARHQRIHT 36
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
+R ++C +CG +FR K L H R+H
Sbjct: 8 QRVYECQECGKSFRQKGSLTLH-ERIH 33
Score = 33.3 bits (77), Expect = 0.009
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
+ +C+ CGKSF +L +H H
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIH 33
Score = 26.8 bits (60), Expect = 1.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK ++ + L H++I T
Sbjct: 13 CQECGKSFRQKGSLTLHERIHT 34
Score = 25.6 bits (57), Expect = 4.7
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 274 NMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSE 307
+ SG Y C C KSF K SL H +H+
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGS 36
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KC CGK F+ NS L H H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVH 35
Score = 31.3 bits (72), Expect = 0.045
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++CN+CG F HL H R+H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARH-RRVH 35
Score = 27.9 bits (63), Expect = 0.82
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK + S L +H+++ T
Sbjct: 15 CNECGKVFTQNSHLARHRRVHT 36
Score = 27.5 bits (62), Expect = 1.1
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K F L H VH+ S S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KC CGK+F+ S L +H +H
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 32.1 bits (74), Expect = 0.023
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C+DCG F K L+ H + H
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIH-QQSH 35
Score = 29.8 bits (68), Expect = 0.17
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C+ C K+F K L H H+ E S S
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 26.3 bits (59), Expect = 3.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C++CGK + +S L H++ T
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHT 36
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KCE CGK +++ L +H H
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 31.3 bits (72), Expect = 0.054
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C CG + K +L+ H ++H
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMH-QKVH 35
Score = 29.8 bits (68), Expect = 0.18
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K + K +L H VH+ E S S
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 27.9 bits (63), Expect = 0.91
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C +CGK Y + L H+K+ T
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHT 36
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KC CGK F+ NS L H H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIH 35
Score = 31.7 bits (73), Expect = 0.034
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++CN+CG F HL H +H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARH-RGIH 35
Score = 28.2 bits (64), Expect = 0.73
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK + S L +H+ I T
Sbjct: 15 CNECGKVFTQNSHLARHRGIHT 36
Score = 27.1 bits (61), Expect = 1.8
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K F L H +H+ E S S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.1 bits (82), Expect = 0.002
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP +C C K+F+ S L VH TH +
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 32.1 bits (74), Expect = 0.029
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++CN+C F K +L H R H
Sbjct: 10 EKPYECNECQKAFNTKSNLMVH-QRTH 35
Score = 27.8 bits (63), Expect = 0.92
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNEC K + +S L H++ T
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHT 36
Score = 27.1 bits (61), Expect = 1.5
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKC 312
+ +G+ Y C C+K+F K +L H H+ E
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KC CGK F+ NS L H H
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIH 35
Score = 31.7 bits (73), Expect = 0.037
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++CN+CG F HL +H R+H
Sbjct: 10 EKPYKCNECGKVFTQNSHLANH-QRIH 35
Score = 28.6 bits (65), Expect = 0.47
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K F L +H +H+ S S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 27.5 bits (62), Expect = 1.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK + S L H++I T
Sbjct: 15 CNECGKVFTQNSHLANHQRIHT 36
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP C C K+FS S L VH +H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 32.5 bits (75), Expect = 0.022
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
+P+ C+ C TF LK L H R H
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVH-QRSH 35
Score = 29.0 bits (66), Expect = 0.34
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G Y C+ C K+F K L H H+ S S
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 26.7 bits (60), Expect = 2.5
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C++C K + +S L H++ T
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHT 36
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP C+ CGK+F ++ L H H
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 31.3 bits (72), Expect = 0.052
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P+ C+ CG F L L H R+H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRH-QRIH 35
Score = 29.8 bits (68), Expect = 0.16
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ SG+ Y C YC K+F L H +H+ E S S
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.69
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ CGK + + L +H++I T
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHT 36
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
+P C VCGK+F++ S L H H
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 30.9 bits (71), Expect = 0.064
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y CT C K+F + +L H +H+ E S S
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.14
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
ERP+ C CG F + +L H ++H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKH-QKIH 35
Score = 26.7 bits (60), Expect = 2.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C CGK + S L KH+KI T
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHT 36
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP C CGK+F + S L +H+ TH
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 32.1 bits (74), Expect = 0.023
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
+P+ CN+CG FR K +L H R H
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIH-TRTH 35
Score = 28.2 bits (64), Expect = 0.59
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK ++ +S+L H + T
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHT 36
Score = 26.3 bits (59), Expect = 3.1
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSE 307
+ +G Y C C K+F K L H H+ E
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP +C CGKSF L H H +
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 34.1 bits (79), Expect = 0.005
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
++PF+C CG +FR K +L +H R+H
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTH-QRIH 35
Score = 30.2 bits (69), Expect = 0.14
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G + CT+C KSF K +L H +H+ E + S
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 28.3 bits (64), Expect = 0.66
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ Q F+C CGK R K H +H+G+ +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 26.0 bits (58), Expect = 3.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C CGK ++ + L H++I T
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHT 36
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP C CGK+FS S L H TH
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTH 35
Score = 33.3 bits (77), Expect = 0.011
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P+ CN+CG TF K L++H R H
Sbjct: 10 EKPYGCNECGKTFSQKSILSAH-QRTH 35
Score = 30.2 bits (69), Expect = 0.14
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ SG+ Y C C K+F K L H H+ E S S
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK + +S L H++ T
Sbjct: 15 CNECGKTFSQKSILSAHQRTHT 36
Score = 26.7 bits (60), Expect = 1.9
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 243 VHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + + + C CGK K H H+G+ +
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 219 VHLKLKPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KC CGK + L H H
Sbjct: 6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 31.7 bits (73), Expect = 0.037
Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C +CG ++ + L+ H R+H
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFH-QRVH 35
Score = 31.0 bits (71), Expect = 0.065
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 271 DHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ SG+ Y C C K + + L H VH+ E S S
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 26.7 bits (60), Expect = 2.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK YK L H+++ T
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHT 36
Score = 26.0 bits (58), Expect = 3.8
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + + +KC CGK + + D H +H+G+ +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 39.8 bits (92), Expect = 0.002
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 219 VHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGR 253
+C VC + L H +H G
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGN 208
Score = 35.2 bits (80), Expect = 0.060
Identities = 8/54 (14%), Positives = 15/54 (27%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHS 277
E S + T + ++C +C + D H+ H
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Score = 30.6 bits (68), Expect = 1.4
Identities = 7/54 (12%), Positives = 9/54 (16%)
Query: 254 FKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSE 307
+ S Y C C L H+ H
Sbjct: 153 RIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP C CGK+F+ S L H H
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIH 35
Score = 30.6 bits (70), Expect = 0.083
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P+ C +CG F ++ +L H ++H
Sbjct: 10 EKPYICAECGKAFTIRSNLIKH-QKIH 35
Score = 30.6 bits (70), Expect = 0.089
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K+F + +L H +H+ + S S
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 27.5 bits (62), Expect = 1.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK + S L KH+KI T
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHT 36
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP +C CGKSFS +S L H H
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIH 35
Score = 32.5 bits (75), Expect = 0.019
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+PF+C +CG +F + L +H R+H
Sbjct: 10 EKPFECAECGKSFSISSQLATH-QRIH 35
Score = 30.2 bits (69), Expect = 0.13
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ + C C KSF L H +H+ E S S
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 2.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK + S L H++I T
Sbjct: 15 CAECGKSFSISSQLATHQRIHT 36
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
+P KC CGKSF ++ L H H +
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.023
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
ERP +CN+CG +F HL H R+H
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQH-QRIH 35
Score = 29.8 bits (68), Expect = 0.16
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ + C C KSF+ L H +H+ E S S
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 3.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK + + L +H++I T
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHT 36
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.9 bits (81), Expect = 0.003
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP +C+ CG +FS + +L H +H
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 32.9 bits (76), Expect = 0.012
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ + C C +F + SL HL H S S
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 31.0 bits (71), Expect = 0.072
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+PFQC +CG F L H+ R H
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHL-RSH 35
Score = 29.9 bits (68), Expect = 0.18
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 461 CNECGKQYKWESFLQKHKKI 480
C ECG + W L KH +
Sbjct: 15 CKECGMNFSWSCSLFKHLRS 34
Score = 27.2 bits (61), Expect = 1.4
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTC 284
++ + F+C CG + + H+ H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 26.0 bits (58), Expect = 3.4
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVH 450
K ++C++C M F + +L +H++ H
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 25.2 bits (56), Expect = 8.8
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVEAVHLKLKPCKC 228
K F+C+ C M F SL KH H + P
Sbjct: 11 KPFQCKECGMNFSWSCSLFKH-LRSHERTDPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP CE CGK+F ++S L+ H H
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 31.0 bits (71), Expect = 0.075
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K+F++ L+ H +H+ E S S
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.14
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P+ C +CG F L H R+H
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEH-QRIH 35
Score = 29.4 bits (67), Expect = 0.26
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK + +S LQ+H++I T
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHT 36
Score = 25.2 bits (56), Expect = 7.2
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + + C CGK H +H +H+G+ +
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP KC+ CGK+F N L H H +
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.012
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+PF+C +CG FR HL SH R+H
Sbjct: 10 EKPFKCKECGKAFRQNIHLASH-LRIH 35
Score = 28.2 bits (64), Expect = 0.72
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ SG+ + C C K+F L HL +H+ E S S
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK ++ L H +I T
Sbjct: 15 CKECGKAFRQNIHLASHLRIHT 36
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.9 bits (81), Expect = 0.003
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP KC CGK+F +NS+ H H Q
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 29.9 bits (68), Expect = 0.15
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C +CG F H RLH
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQH-QRLH 35
Score = 28.7 bits (65), Expect = 0.41
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K+F S H +H+ + S S
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 27.9 bits (63), Expect = 0.71
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK + S +H+++ T
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHT 36
Score = 26.0 bits (58), Expect = 3.7
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + +KC CGK + H +H+G +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 217 EAVHLKLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
+ +P C CGK+F +S L H H +
Sbjct: 4 GSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ SG+ Y C C K+F L HL H E +S S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 32.9 bits (76), Expect = 0.014
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
ERP+ CN+CG F HL H + H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEH-LKRH 35
Score = 28.6 bits (65), Expect = 0.42
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 461 CNECGKQYKWESFLQKHKKI 480
CNECGK + S L +H K
Sbjct: 15 CNECGKNFGRHSHLIEHLKR 34
Score = 25.9 bits (58), Expect = 4.1
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + + + C CGK+ +H+ H + +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP +C+ CGK+FS + L H H +
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.062
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C +CG F HL H R+H
Sbjct: 10 EKPYECKECGKAFSQTTHLIQH-QRVH 35
Score = 28.2 bits (64), Expect = 0.63
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K+F L H VH+ E S S
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 3.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK + + L +H+++ T
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHT 36
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KC CGK F+ NS L H H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIH 35
Score = 31.7 bits (73), Expect = 0.032
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
++P++CN+CG F HL H +H
Sbjct: 10 KKPYKCNECGKVFTQNSHLARH-RGIH 35
Score = 28.6 bits (65), Expect = 0.50
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK + S L +H+ I T
Sbjct: 15 CNECGKVFTQNSHLARHRGIHT 36
Score = 27.1 bits (61), Expect = 1.4
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G Y C C K F L H +H+ E S S
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
+P +C CGK+F S+L H +H
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSH 35
Score = 31.7 bits (73), Expect = 0.039
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
+RP++C +CG F+ K L H R H
Sbjct: 10 QRPYECIECGKAFKTKSSLICH-RRSH 35
Score = 31.0 bits (71), Expect = 0.067
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G Y C C K+F K SL H H+ E S S
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.78
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK +K +S L H++ T
Sbjct: 15 CIECGKAFKTKSSLICHRRSHT 36
Score = 25.2 bits (56), Expect = 7.0
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ Q ++C CGK + K + H H+G+ +
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP +C+VC K+FS++++L H H
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVH 35
Score = 30.2 bits (69), Expect = 0.14
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K+F + SL H VHS E S S
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.15
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C+ C F L H R+H
Sbjct: 10 EKPYECDVCRKAFSHHASLTQH-QRVH 35
Score = 27.9 bits (63), Expect = 0.77
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ C K + + L +H+++ +
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHS 36
Score = 25.5 bits (57), Expect = 5.8
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 243 VHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + ++C +C K H + H +HSG+ +
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 34.6 bits (80), Expect = 0.003
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP C C ++FS+N+ L H H
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMH 33
Score = 32.3 bits (74), Expect = 0.020
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P+ C +C TF L H ++H
Sbjct: 8 EKPYSCAECKETFSDNNRLVQH-QKMH 33
Score = 29.2 bits (66), Expect = 0.27
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 276 HSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKC 312
SG+ Y+C C+++F L H +H+ +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 26.9 bits (60), Expect = 1.5
Identities = 6/40 (15%), Positives = 13/40 (32%)
Query: 245 STTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTC 284
S+ + + + C C + H MH+ +
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 26.9 bits (60), Expect = 1.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 460 SCNECGKQYKWESFLQKHKKICT 482
SC EC + + + L +H+K+ T
Sbjct: 12 SCAECKETFSDNNRLVQHQKMHT 34
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 34.8 bits (81), Expect = 0.003
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP +C CGK+F S L VH TH
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTH 35
Score = 30.6 bits (70), Expect = 0.079
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++CN+CG F K L H R H
Sbjct: 10 EKPYECNECGKAFIWKSLLIVH-ERTH 35
Score = 30.6 bits (70), Expect = 0.091
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK + W+S L H++
Sbjct: 15 CNECGKAFIWKSLLIVHERTHA 36
Score = 28.3 bits (64), Expect = 0.66
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSE 307
+ SG+ Y C C K+F++K L H H+
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGV 38
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP +C+VC K+F+ + L H TH +
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.015
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C C F K HL H + H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQH-QKTH 35
Score = 27.5 bits (62), Expect = 1.0
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K+F K L H H+ E S S
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 2.3
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C C K + ++ L +H+K T
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHT 36
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP C CGK+FS++ L H H
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 32.9 bits (76), Expect = 0.014
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+PF C DCG F LN H R+H
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQH-RRIH 35
Score = 29.4 bits (67), Expect = 0.24
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ + C C K+F L H +H+ E S S
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.86
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C +CGK + L +H++I T
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHT 36
Score = 25.9 bits (58), Expect = 4.6
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + F C CGK + H +H+G+ +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
K C+ CGKSFS L H H
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLH 35
Score = 31.0 bits (71), Expect = 0.061
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+ + C +CG +F L H RLH
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKH-ERLH 35
Score = 30.6 bits (70), Expect = 0.079
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C KSF L H +HS E S S
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.58
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK + L KH+++ +
Sbjct: 15 CKECGKSFSRAPCLLKHERLHS 36
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.004
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
+ +C CGK+F STL +H H
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIH 35
Score = 31.3 bits (72), Expect = 0.049
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
ER ++C++CG F K L+ H R+H
Sbjct: 10 ERHYECSECGKAFIQKSTLSMH-QRIH 35
Score = 29.4 bits (67), Expect = 0.23
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C+ C K+F+ K +L H +H E S S
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 25.9 bits (58), Expect = 4.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ECGK + +S L H++I
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHR 36
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.005
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP KC CGK F NS L H H +
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.027
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C++CG FR HL H +H
Sbjct: 10 EKPYKCHECGKVFRRNSHLARH-QLIH 35
Score = 27.8 bits (63), Expect = 0.76
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ECGK ++ S L +H+ I T
Sbjct: 15 CHECGKVFRRNSHLARHQLIHT 36
Score = 27.8 bits (63), Expect = 0.87
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K F L H +H+ E S S
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 34.1 bits (79), Expect = 0.005
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP C+ CGKSF S L H H+ +
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.059
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P+ C +CG +FR L H R+H
Sbjct: 10 EKPYNCKECGKSFRWASCLLKH-QRVH 35
Score = 30.6 bits (70), Expect = 0.099
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK ++W S L KH+++ +
Sbjct: 15 CKECGKSFRWASCLLKHQRVHS 36
Score = 30.2 bits (69), Expect = 0.12
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C KSF + L H VHS E S S
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 26.0 bits (58), Expect = 4.2
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + + C CGK R H +HSG+ +
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.005
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP C VCGK+F ++ L H H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 33.6 bits (78), Expect = 0.008
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P+ CN CG F L HLN H R+H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQH-LRVH 35
Score = 32.9 bits (76), Expect = 0.015
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y+C C K+F+ L HL VH+ E S S
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 27.9 bits (63), Expect = 0.94
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CN CGK + + L +H ++ T
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHT 36
Score = 26.3 bits (59), Expect = 2.8
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + + C +CGK + H+ +H+ + +
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.006
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
K +C CGK+F+ STL +H H
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIH 35
Score = 32.5 bits (75), Expect = 0.021
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
+ F+C +CG F K L+ H ++H
Sbjct: 10 GKHFECTECGKAFTRKSTLSMH-QKIH 35
Score = 30.2 bits (69), Expect = 0.11
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G + CT C K+F K +L H +H+ E S S
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 2.4
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ F+C CGK K T H +H+G+ +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 3.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK + +S L H+KI T
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHT 36
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 33.6 bits (78), Expect = 0.006
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
P +C CGK+F+ L H TH
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTH 33
Score = 31.7 bits (73), Expect = 0.029
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E P++C++CG F K L SH R H
Sbjct: 8 ENPYECSECGKAFNRKDQLISH-QRTH 33
Score = 25.9 bits (58), Expect = 4.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 274 NMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKC 312
+ SG+ Y C+ C K+F K L H H+ E
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 25.6 bits (57), Expect = 4.6
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ECGK + + L H++
Sbjct: 13 CSECGKAFNRKDQLISHQRTHA 34
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.006
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP C CGKSF S L H H
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIH 35
Score = 33.3 bits (77), Expect = 0.010
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P+ CN+CG +F K HLN H R+H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRH-RRIH 35
Score = 29.0 bits (66), Expect = 0.35
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C KSF+ K L H +H+ E S S
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.66
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK + +S L +H++I T
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHT 36
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.1 bits (79), Expect = 0.006
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
++P++C +C TF HLN H R+H
Sbjct: 10 KKPYECKECRKTFIQIGHLNQH-KRVH 35
Score = 34.1 bits (79), Expect = 0.006
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP +C+ C K+F L H H +
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 30.2 bits (69), Expect = 0.12
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ SG Y C C K+F+ L H VH+ E +S S
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 27.1 bits (61), Expect = 1.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C EC K + L +HK++ T
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHT 36
Score = 25.2 bits (56), Expect = 6.8
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTC 284
++ + + ++C C K + H +H+G+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 0.007
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP +C CGK+FS S L H H +
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.049
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
+P+QCN+CG F L H R+H
Sbjct: 10 GKPYQCNECGKAFSQTSKLARH-QRVH 35
Score = 29.0 bits (66), Expect = 0.35
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G Y C C K+F L H VH+ E S S
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK + S L +H+++ T
Sbjct: 15 CNECGKAFSQTSKLARHQRVHT 36
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.007
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
P +C CGK+FS L H TH
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTH 35
Score = 32.1 bits (74), Expect = 0.024
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E P++C++CG F K L SH R H
Sbjct: 10 ENPYECHECGKAFSRKYQLISH-QRTH 35
Score = 29.0 bits (66), Expect = 0.33
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K+F K L H H+ E S S
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 26.7 bits (60), Expect = 2.0
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ECGK + + L H++
Sbjct: 15 CHECGKAFSRKYQLISHQRTHA 36
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.007
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
+ +C CGK+F+ STL +H H
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIH 35
Score = 32.1 bits (74), Expect = 0.026
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
ER ++C++CG F K L H R+H
Sbjct: 10 ERHYECSECGKAFARKSTLIMH-QRIH 35
Score = 30.9 bits (71), Expect = 0.078
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C+ C K+F K +L H +H+ E S S
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 25.5 bits (57), Expect = 5.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ECGK + +S L H++I T
Sbjct: 15 CSECGKAFARKSTLIMHQRIHT 36
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 0.007
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP +C CGK+FS S+L H H
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 31.3 bits (72), Expect = 0.048
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++CN CG F ++ L +H +H
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTH-QAIH 35
Score = 31.0 bits (71), Expect = 0.067
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K+F + SL H +H+ + S S
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 27.5 bits (62), Expect = 1.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CN+CGK + S L H+ I T
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHT 36
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 34.9 bits (79), Expect = 0.008
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 195 KRFKCEVCPMKFHRQVS-LKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHS 245
C C + + + LKKH+E KC+ C K F + + L H+
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHT 74
Score = 31.1 bits (69), Expect = 0.22
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 370 FQCNDCGSTFRLK-RHLNSHINRLHKLK--LNCVHCQAIFTNKQRLNYHILTKHS 421
C C R L H+ KL+ L C HC+ F +K LNYH + +HS
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Score = 30.3 bits (67), Expect = 0.38
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 250 DQGRFKCPICGKHIRHK-QTFDDHMNM-HSGDVKYTCTYCEKSFLYKKSLKHHLFV-HSS 306
++G CP C R HM + C +C K F K L +H HS+
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
Query: 307 EFTSK 311
+ +
Sbjct: 81 KPSDA 85
Score = 29.9 bits (66), Expect = 0.52
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 336 FQCRICDKIL-SNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLH 393
C C+ + + G+++HME + +C C F+ K LN H H
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKL-----QDALKCQHCRKQFKSKAGLNYHTMAEH 78
Score = 27.2 bits (59), Expect = 5.0
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 184 RKHVNGVHLKIKRFKCEVCPMKFHRQVSLKKHVEAVH 220
+KH+ KC+ C +F + L H A H
Sbjct: 42 KKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Score = 26.8 bits (58), Expect = 7.4
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 460 SCNECGK-QYKWESFLQKHKKICTT-----TCKSCGKRYSSIYVLRNHVKSCYGQQKNLS 513
C C K L+KH ++C C+ C K++ S L H + + + + +
Sbjct: 26 VCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDA 85
Query: 514 H 514
Sbjct: 86 E 86
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 33.2 bits (77), Expect = 0.009
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP +C CGK+F+ + L H H
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIH 35
Score = 32.1 bits (74), Expect = 0.024
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C +CG F K +L H R+H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQH-QRIH 35
Score = 29.4 bits (67), Expect = 0.24
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ Y C C K+F K +L H +H+ E S S
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK + ++ L +H++I T
Sbjct: 15 CGECGKAFAQKANLTQHQRIHT 36
Score = 25.2 bits (56), Expect = 8.0
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + ++C CGK K H +H+G+ +
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.010
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+PF+C +CG ++ + HL H R+H
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQH-QRVH 35
Score = 32.5 bits (75), Expect = 0.017
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP KC CGKS++ L H H +
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.22
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ + C C KS+ + L H VH+ E S S
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 2.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C ECGK Y L +H+++ T
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHT 36
Score = 24.8 bits (55), Expect = 9.7
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCT 285
++ + FKC CGK + H +H+G+ +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.018
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
KP KC CGK+F ++ L H H
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 31.7 bits (73), Expect = 0.031
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E+P++C++CG F HLN H R+H
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEH-RRIH 35
Score = 28.2 bits (64), Expect = 0.68
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
C+ECGK + + L +H++I T
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHT 36
Score = 28.2 bits (64), Expect = 0.71
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ SG+ Y C+ C K+F L H +H+ S S
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 32.2 bits (74), Expect = 0.027
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 224 KPCKCEVCGKSFSNNSTLKVH 244
KP +C CGK+F N++L H
Sbjct: 11 KPYECIECGKAFIQNTSLIRH 31
Score = 31.8 bits (73), Expect = 0.031
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
++P++C +CG F L H H
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 29.1 bits (66), Expect = 0.29
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSL-KHHLFVHSSEFTSKCS 313
+ +G Y C C K+F+ SL +H + H+ E S S
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 33.6 bits (76), Expect = 0.028
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 239 STLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVK----YTCTYCEKSFLYK 294
+ +G ++C C F H++ +V Y C C
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 295 KSLK-HHLFVHSSEFTSKCSVCDR 317
+L H+L H E K ++ R
Sbjct: 64 DALSEHNLKYHPGEENFKLTMVKR 87
Score = 33.6 bits (76), Expect = 0.034
Identities = 10/76 (13%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 318 LYKSDYLRRKHERSHSSIFQCRICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGS 377
+ + + + ++C+ C ++ H+++ H + N+ + C +C
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNS--SYVCVECNF 58
Query: 378 TFRLKRHLNSHINRLH 393
+ L+ H + H
Sbjct: 59 LTKRYDALSEHNLKYH 74
Score = 33.2 bits (75), Expect = 0.044
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHVEAVH--LKLKPC-KCEVCGKSFSNNSTLKVHSTT-HAD 250
++C+ C + HV++ H + L C C L H+ H
Sbjct: 17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
Query: 251 QGRFKC 256
+ FK
Sbjct: 77 EENFKL 82
Score = 29.4 bits (65), Expect = 0.95
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 165 ENKFKCQFCPMWFEQRGKRRKHVNGVHLKIKR---FKCEVCPMKFHRQVSLKKHVEAVHL 221
E ++C++C HV+ H + + C C R +L +H H
Sbjct: 16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP 75
Query: 222 KLKPCKCEV 230
+ K +
Sbjct: 76 GEENFKLTM 84
Score = 28.2 bits (62), Expect = 2.3
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 413 NYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDS-SCNECGKQYKWE 471
++H + + ++C+ C + H+ N + S C EC K
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 472 SFLQKH 477
L +H
Sbjct: 64 DALSEH 69
Score = 27.0 bits (59), Expect = 5.3
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 354 HMENMHNSDKDNTERPFQCNDCGSTFR----LKRHLNS-HINRLHKLKLNCVHCQAIFTN 408
H + HN E ++C C H++S H N + CV C +
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 409 KQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNL 443
L+ H L H G K + + + + +
Sbjct: 63 YDALSEHNLKYHPGEENFKLTMVKRNNQTIFEQTI 97
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 31.8 bits (73), Expect = 0.030
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSH 388
+ + CN+CG F HL H
Sbjct: 10 SKSYNCNECGKAFTRIFHLTRH 31
Score = 31.8 bits (73), Expect = 0.033
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
K C CGK+F+ L H H
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 27.9 bits (63), Expect = 0.70
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 461 CNECGKQYKWESFLQKHKKICT 482
CNECGK + L +H+KI T
Sbjct: 15 CNECGKAFTRIFHLTRHQKIHT 36
Score = 26.4 bits (59), Expect = 2.4
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 271 DHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKC 312
+ + Y C C K+F L H +H+ +
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 32.4 bits (74), Expect = 0.035
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 191 HLKIKRFKCEV--CPMKFHRQVSLKKHVEAVHLKLKPCKCEV--CGKSFSNNSTLKVHST 246
+I+ C C + + LK H H KP C C + F+ + L H
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFARSDELSRHRR 70
Query: 247 TH 248
TH
Sbjct: 71 TH 72
Score = 32.0 bits (73), Expect = 0.048
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 220 HLKLKPCKCEV--CGKSFSNNSTLKVHSTTHADQGRFKC--PICGK 261
+++ C CGK++ +S LK H+ TH + F C C +
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCER 57
Score = 28.9 bits (65), Expect = 0.68
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 272 HMNMHSGDVKYTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCSV--CD-RLYKSDYLRR 326
S + C++ C K++ LK H H+ E CS C+ R +SD L R
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSR 67
Query: 327 KHERSH 332
H R+H
Sbjct: 68 -HRRTH 72
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 31.0 bits (70), Expect = 0.056
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINRLH 393
E PF+C+ C F + +L H R H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQH-ERTH 35
Score = 30.6 bits (69), Expect = 0.10
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
P KC C + F+ + L H THA +
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 29.8 bits (67), Expect = 0.19
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSE 307
+ +G+ + C+ C++ F + L H H+ +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 26.7 bits (59), Expect = 2.1
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 244 HSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSG 278
++ A + FKC C + + H H+
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 26.4 bits (58), Expect = 2.5
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 418 TKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVH 450
+ +G +KC KCD F L +H + H
Sbjct: 5 SSGAGE--NPFKCSKCDRVFTQRNYLVQHERTH 35
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 31.1 bits (71), Expect = 0.070
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 272 HMNMHSGDVKYTCTY--CEKSFLYKKSLKHHLFVHSSEFTSKCS 313
+ +G+ + CT+ C F L H HS S S
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 30.7 bits (70), Expect = 0.085
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 224 KPCKC--EVCGKSFSNNSTLKVHSTTHADQGRFKC 256
KP C CG FS + L H +H+
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 26.5 bits (59), Expect = 3.2
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 367 ERPFQCN--DCGSTFR----LKRHLNSH 388
E+PF C CG F L RH SH
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSH 37
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 31.8 bits (72), Expect = 0.074
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 370 FQCNDCGSTFRLKRHLNSHINRLHK-LKLNCVHCQAIFTN 408
F CN CG + + K + H++ L+C+ C F
Sbjct: 11 FTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG 49
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 32.1 bits (72), Expect = 0.093
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 425 YKAWKCEKCD-MRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKH 477
+ C C + T + LK+HM+ ++ +C+ CGKQ + + ++ H
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHMENCKQEM----FTCHHCGKQLRSLAGMKYH 81
Score = 29.8 bits (66), Expect = 0.58
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 370 FQCNDCGS-TFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHILTKHS 421
C C + + L H+ + C HC + + YH++ H+
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
Score = 29.1 bits (64), Expect = 0.97
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 250 DQGRFKCPICGKHIRHK-QTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHL 301
D+G CP C R + HM ++ +TC +C K +K+H+
Sbjct: 31 DKGSVSCPTCQAVGRKTIEGLKKHMENCKQEM-FTCHHCGKQLRSLAGMKYHV 82
Score = 28.3 bits (62), Expect = 2.1
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 195 KRFKCEVCPMKFHRQVS-LKKHVEAVHLKLKPCKCEVCGKSFSNNSTLKVHS 245
C C + + LKKH+E + K + C CGK + + +K H
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHME--NCKQEMFTCHHCGKQLRSLAGMKYHV 82
Score = 27.5 bits (60), Expect = 4.0
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 336 FQCRICDKIL-SNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLH 393
C C + I+G+++HMEN + F C+ CG R + H+ H
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENCK-------QEMFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 26.4 bits (57), Expect = 7.8
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 311 KCSVCDRLYKSDY--LRRKHERSHSSIFQCRICDKILSNIQGIRRHMENMHNSDKDNTE 367
C C + + L++ E +F C C K L ++ G++ H+ HNS
Sbjct: 36 SCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGPS 94
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 30.1 bits (67), Expect = 0.11
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
KPC+C +CGK+F+ S+L H H +
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 29.6 bits (67), Expect = 0.16
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 220 HLKLKPCKCEVCGKSFSNNSTLKVHSTTH 248
+KP +C C +SFS + L +H H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.8 bits (65), Expect = 0.37
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSHINR 391
+PFQC DC +F HL H R
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 28.1 bits (63), Expect = 0.59
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 419 KHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVH 450
+G K ++C CD F + +L H K H
Sbjct: 5 GSTG--IKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.1 bits (63), Expect = 0.67
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 191 HLKIKRFKCEVCPMKFHRQVSLKKHV 216
IK F+C C F R L H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHR 31
Score = 27.3 bits (61), Expect = 1.3
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 272 HMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVH 304
+G + C C++SF L H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.20
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 282 YTCTYCEKSFLYKKSLKHHLFVHSSE 307
+TC YC K F +K SL+ HL +H++E
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNE 35
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 29.1 bits (64), Expect = 0.36
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 245 STTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDV 280
S+ + + + CP+CG + K H+ H G V
Sbjct: 2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 37
Score = 26.0 bits (56), Expect = 3.7
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 361 SDKDNTERPFQCNDCGSTFRLKRHLNSHI 389
S + E+P+ C CG F+ K ++ H+
Sbjct: 2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHV 30
Score = 25.6 bits (55), Expect = 6.3
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 220 HLKLKPCKCEVCGKSFSNNSTLKVHSTTH 248
KP C VCG F + H +H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 32.1 bits (72), Expect = 0.37
Identities = 6/52 (11%), Positives = 15/52 (28%)
Query: 256 CPICGKHIRHKQTFDDHMNMHSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSE 307
K + H N+ G+ + E+ + L+ + +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLR 234
Score = 28.2 bits (62), Expect = 5.1
Identities = 5/49 (10%), Positives = 16/49 (32%)
Query: 228 CEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMH 276
E K + S +H + R + + + + + +++
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 27.5 bits (60), Expect = 9.5
Identities = 4/34 (11%), Positives = 14/34 (41%)
Query: 417 LTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVH 450
+ ++ K + EK + ++L+ + +
Sbjct: 198 IHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 29.6 bits (66), Expect = 0.38
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 341 CDKILSNIQGIRRHMENMH-NSDKDNTERPFQC--NDCGSTFRLKRHLNSHINRLH 393
C + S++ ++RH+ H + D + P C DC + +HIN H
Sbjct: 9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.6 bits (63), Expect = 0.47
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 421 SGPNYKAWKCEKCDMRFVTNKNLKRHMKVHEK 452
SG K +KC KC+ F +K L +H ++H +
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 26.3 bits (57), Expect = 3.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSH 388
E+ F+CN C TF ++L H
Sbjct: 10 EKCFKCNKCEKTFSCSKYLTQH 31
Score = 25.2 bits (54), Expect = 9.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 461 CNECGKQYKWESFLQKHKKICTTTCKS 487
CN+C K + +L +H++I T KS
Sbjct: 15 CNKCEKTFSCSKYLTQHERIHTRGVKS 41
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 31.7 bits (71), Expect = 0.48
Identities = 15/80 (18%), Positives = 23/80 (28%), Gaps = 21/80 (26%)
Query: 358 MHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHIL 417
+ K+ R C+ C + R + C HC+ + L Y L
Sbjct: 197 IRQGGKETGLRYLSCSLCACEWHYVR-------------IKCSHCE----ESKHLAYLSL 239
Query: 418 TKHSGPN----YKAWKCEKC 433
P +A C C
Sbjct: 240 EHDGQPAEKAVLRAETCPSC 259
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 29.2 bits (66), Expect = 0.52
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 306 SEFTSKCSVCDRLYKSDYLRRKHERSHSSIFQCRICDKILSN 347
S +S C C + + + + + H F C C K LS
Sbjct: 2 SSGSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSG 43
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.4 bits (68), Expect = 0.89
Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 7/35 (20%)
Query: 253 RFKCPICGKHIRHKQTFDDHMNMHSGDVKYTCTYC 287
CP C + + + GD C C
Sbjct: 21 VLTCPECKVY--PPKIVERF---SEGD--VVCALC 48
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 28.5 bits (64), Expect = 0.92
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 306 SEFTSKCSVCDRLYKSDYLRRKHERSHSSIFQCRICDKILSN 347
S +S C C++ S + + + H+ F C C K L+
Sbjct: 2 SSGSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAG 43
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 30.6 bits (70), Expect = 0.95
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 455 NMLDSSCNECGKQYKWESFLQKHKKICTTTCKSCG 489
+M C +C + Y W F++ K C+ CG
Sbjct: 120 SMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCG 154
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 31.0 bits (70), Expect = 1.0
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 3/79 (3%)
Query: 303 VHSSEFTSKCSVCDRLYKSDYLRRKHERSHSSIFQCRICDKILSNIQGIRRHMENMHN-S 361
H S T+ C C + + K + C C K + + S
Sbjct: 155 CHGSFATATCVTCHWNLPGERIFNKIRNLE--LPLCPYCYKKRREYFPEGYNNKVGVAAS 212
Query: 362 DKDNTERPFQCNDCGSTFR 380
+ERP + +
Sbjct: 213 QGSMSERPPYILNSYGVLK 231
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.5 bits (60), Expect = 1.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 228 CEVCGKSFSNNSTLKVHSTTHADQG 252
C++CGK F + TLK H H G
Sbjct: 12 CDMCGKKFKSKGTLKSHKLLHTADG 36
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger,
transcription activator; 3.00A {Escherichia coli} SCOP:
e.64.1.1
Length = 192
Score = 30.4 bits (68), Expect = 1.1
Identities = 29/112 (25%), Positives = 38/112 (33%), Gaps = 25/112 (22%)
Query: 175 MWFEQRGKRRKHVNGVHLKIK--RFKCEVCPMK-------FHRQVSLKKHVEAVHLKLKP 225
Q + NGV IK R E CP R +L + VE+ L+L
Sbjct: 77 CNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSS 136
Query: 226 CKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPIC------GKHIRHKQTFDD 271
C C CG +F + H G F C +C K + Q D
Sbjct: 137 CNC--CGGNFITH--------AHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 27.3 bits (61), Expect = 1.1
Identities = 11/25 (44%), Positives = 11/25 (44%), Gaps = 4/25 (16%)
Query: 368 RPFQCNDCGSTFR----LKRHLNSH 388
R F C C F LKRH SH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 25.0 bits (55), Expect = 7.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHSTTH 248
+ CEVC ++F+ LK H +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 24.6 bits (54), Expect = 9.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 195 KRFKCEVCPMKFHRQVSLKKHV 216
+ F CEVC F RQ LK+H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 30.3 bits (68), Expect = 1.1
Identities = 7/51 (13%), Positives = 22/51 (43%)
Query: 234 SFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVKYTC 284
+F+ + +L++ + D G ++ I K ++ + +++ T
Sbjct: 65 NFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTN 115
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 28.8 bits (64), Expect = 1.2
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 225 PCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICG---KHIRHKQTFDDHM 273
P K +VCG ++ ++ +++ + + + CP G IR D
Sbjct: 20 PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEA 71
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 28.1 bits (63), Expect = 1.5
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 304 HSSEFTSKCSVCDRLYKSDYLRRKHERSHSSIFQCRICDKILSN 347
+ ++F +C+ C + + + + H C C L+
Sbjct: 10 YENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAG 53
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.6
Identities = 6/23 (26%), Positives = 9/23 (39%), Gaps = 6/23 (26%)
Query: 68 KVRIKKKRGEPRKANPQELYTPD 90
K +KK + + LY D
Sbjct: 19 KQALKKLQASLK------LYADD 35
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 29.7 bits (66), Expect = 1.7
Identities = 25/161 (15%), Positives = 48/161 (29%), Gaps = 11/161 (6%)
Query: 333 SSIFQCRICDKILSN-IQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLK--RHLNSHI 389
S ++C IC L +Q H K + +C N
Sbjct: 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAK 75
Query: 390 NRLHKLKLNCVHCQAIFTNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKV 449
+ L + C + + + R H+ + + C +C F ++ H+
Sbjct: 76 REILSLMVKCPNEGCLHKMELR---HLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILK 131
Query: 450 HEKNRNMLDSSCNECGKQYKWESFLQKHKKICTTTCKSCGK 490
R + SC+ C +E + H + C +
Sbjct: 132 DCPRRQV---SCDNCAASMAFED-KEIHDQNCPLALEHHHH 168
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 28.5 bits (63), Expect = 2.4
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 423 PNYKAWKCEKCDMRFVTNKNLKRHM--KVHEKNRNML 457
P +C C F+ + NLK H K H+K L
Sbjct: 46 PGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQL 82
>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV,
proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV
DMU; 1.95A {Bos taurus}
Length = 129
Score = 28.5 bits (63), Expect = 2.5
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSH 388
+C CG+ ++L H +H
Sbjct: 108 GEAQRCPSCGTHYKLVPHQLAH 129
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 28.3 bits (63), Expect = 2.7
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 234 SFSNNSTLKVHSTTHADQGRFKC 256
+ L + S T D G + C
Sbjct: 66 APGPGLGLTLQSLTVNDTGEYFC 88
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 29.5 bits (67), Expect = 2.8
Identities = 4/48 (8%), Positives = 14/48 (29%), Gaps = 15/48 (31%)
Query: 328 HER--SHSSI-------------FQCRICDKILSNIQGIRRHMENMHN 360
ER + + + +++ + I + + H+
Sbjct: 310 QERSGAGWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLGADESHHHH 357
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 26.3 bits (57), Expect = 2.9
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 276 HSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFT 309
SG + C C +F K + HL VH+ +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS 35
Score = 25.9 bits (56), Expect = 4.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVH 450
+ + C C F T N RH+KVH
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVH 30
Score = 25.1 bits (54), Expect = 6.6
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 365 NTERPFQCNDCGSTFRLK----RHLNSHINRL 392
+ +RPF C C S F K RHL H + L
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTDTL 34
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 29.5 bits (66), Expect = 3.0
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 12/58 (20%)
Query: 333 SSIFQCRICDKILSNIQG------------IRRHMENMHNSDKDNTERPFQCNDCGST 378
+ + C K N +G + E + D E +C +CG
Sbjct: 18 ACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCR 75
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 28.4 bits (62), Expect = 3.0
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 368 RPFQCNDCGSTFRLKRHLNSHIN-RLHKLKLN---CVHCQAIFTNKQRLNYHILTKHSGP 423
QC C + + +H R H K+ ++ ++ G
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 424 NYKAWKCEKCDMRFVTNKNLKRHM--KVHEKN 453
+ ++ C C+M F + + H K H KN
Sbjct: 91 D-RSKCCPVCNMTFSSPVVAESHYIGKTHIKN 121
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 26.4 bits (57), Expect = 3.1
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 246 TTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGD 279
++ A + +C CGK RH +H +H+G+
Sbjct: 5 SSGAAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 26.3 bits (58), Expect = 3.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 426 KAWKCEKCDMRFVTNKNLKRHMKVHEKNRNML 457
+++ C C F + + L HM VH ++R L
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDRARL 36
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 29.3 bits (66), Expect = 3.2
Identities = 5/35 (14%), Positives = 9/35 (25%)
Query: 455 NMLDSSCNECGKQYKWESFLQKHKKICTTTCKSCG 489
++C C + + E C C
Sbjct: 136 TFASATCTVCQRPFPGEDIRADVMADRVPRCPVCT 170
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE]
hydrogenase maturation, zinc-finger, nickel binding,
metal-binding; HET: FME; 2.30A {Pyrococcus
kodakaraensis} PDB: 3a44_A*
Length = 139
Score = 28.5 bits (63), Expect = 3.3
Identities = 9/46 (19%), Positives = 11/46 (23%), Gaps = 9/46 (19%)
Query: 226 CKCEVCGKSFS---------NNSTLKVHSTTHADQGRFKCPICGKH 262
KC C + +H CP CG H
Sbjct: 71 FKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME
TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F*
1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F*
2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F*
3ag1_F* 3ag2_F* ...
Length = 98
Score = 27.6 bits (61), Expect = 3.3
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 367 ERPFQCNDCGSTFRLKRHLNSH 388
+C CG+ ++L H +H
Sbjct: 77 GEAQRCPSCGTHYKLVPHQLAH 98
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A
{Nitrosomonas europaea} SCOP: a.138.1.3
Length = 546
Score = 29.4 bits (64), Expect = 3.4
Identities = 19/162 (11%), Positives = 44/162 (27%), Gaps = 5/162 (3%)
Query: 347 NIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIF 406
++ + ++ +M + T + C DC K + + C C
Sbjct: 120 KLEEVENNLRSMGKLGEKETLKEVGCIDCHVDVNKKDKADHTKDIRMPTADTCGTCHLRE 179
Query: 407 TNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLD-----SSC 461
++ + +G D + M E + C
Sbjct: 180 FAERESERDTMVWPNGQWPAGRPSHALDYTANIETTVWATMPQREVAEGCTMCHTNQNKC 239
Query: 462 NECGKQYKWESFLQKHKKICTTTCKSCGKRYSSIYVLRNHVK 503
+ C ++++ + + + C T Y + H K
Sbjct: 240 DNCHTRHEFSAAESRKPEACATCHSGVDHNNWEAYTMSKHGK 281
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 29.2 bits (65), Expect = 4.2
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 232 GKSFSNNSTLKVHSTTHADQGRFKC 256
G + L + T + G + C
Sbjct: 597 GIPQQHTQVLFIAKITPNNNGTYAC 621
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 25.6 bits (55), Expect = 4.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 197 FKCEVCPMKFHRQVSLKKHVEAVH 220
+ C +C KF + L+ H+ VH
Sbjct: 8 YVCALCLKKFVSSIRLRSHIREVH 31
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 27.1 bits (59), Expect = 4.5
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 276 HSGDVKYTCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDR 317
+ Y C +C+ L HL +H+ EF + +R
Sbjct: 20 RLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER 61
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 28.5 bits (63), Expect = 4.5
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 359 HNSDKDNTERPFQCNDCGSTF-----RLKRHLNSHINR 391
+ + +C CG TF +LK HL +
Sbjct: 159 RGTLTSLFQEDLKCWRCGETFGRHFTKLKAHLQEEYDD 196
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 28.7 bits (64), Expect = 5.0
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 12/58 (20%)
Query: 333 SSIFQCRICDKILSNIQG------------IRRHMENMHNSDKDNTERPFQCNDCGST 378
+ +C C K N + + H + D D + +C +CG
Sbjct: 23 KCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRK 80
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.6 bits (55), Expect = 5.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 421 SGPNYKAWKCEKCDMRFVTNKNLKRHMKVH 450
SG K ++C KC F K+L +H K H
Sbjct: 6 SGHTRKRYECSKCQATFNLRKHLIQHQKTH 35
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 6.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 421 SGPNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNR 454
SG + K +KC C+ + NLK HM H +
Sbjct: 3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 28.2 bits (63), Expect = 6.1
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 455 NMLDSSCNECGKQYKWESFLQKHKKICTT---TCKSCG 489
+ C CGK Y + F K + C CG
Sbjct: 133 SFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCG 170
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
protein, structural protein; 2.70A {Staphylococcus
epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Length = 729
Score = 28.4 bits (63), Expect = 6.3
Identities = 19/184 (10%), Positives = 48/184 (26%), Gaps = 8/184 (4%)
Query: 306 SEFTSKCSVCDRLYKSDYLRRKHER--SHSSIFQ-CRICDKILSNIQGIRR-----HMEN 357
+ F K S C+ ++++ +R H R + + + + + + R
Sbjct: 146 NSFLRKQSACNIIFRTAIVRAHHIRFNENLNTYVDWSFVLEYMKYVNKFVRIFNFPFYFR 205
Query: 358 MHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNCVHCQAIFTNKQRLNYHIL 417
D T + N I R K+ +
Sbjct: 206 GEVYDPFETLTLSEQNFDILFKDYVNSFYDAIKRATNPKVREFIVTKMGNKIANEFEPTR 265
Query: 418 TKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGKQYKWESFLQKH 477
+ +F+ +K +++ +L ++ + + +H
Sbjct: 266 YDINERYQTHKDTLVELSKFLHVHLVKNQKLINKIETILLMNNETDKAFKVNQFRKTLRH 325
Query: 478 KKIC 481
K
Sbjct: 326 VKNI 329
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 25.1 bits (54), Expect = 6.6
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 223 LKPCKCEVCGKSFSNNSTLKVHSTTHADQ 251
+KP C C + F++ L+ H H +
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 24.7 bits (53), Expect = 9.0
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 282 YTCTYCEKSFLYKKSLKHHLFVHSSE 307
Y C +C++ F +L+ H+ +H+ E
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGE 29
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 28.4 bits (62), Expect = 6.8
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 253 RFKCPICGKHIRHKQTFD--DHMNMHSGDVKYTCTYCEKSFLYK 294
R K P + +H Q FD ++ + C C+ +
Sbjct: 258 RMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 25.1 bits (54), Expect = 6.9
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 421 SGPNYKAWKCEKCDMRFVTN-KNLKRHMKVHE 451
SG + +A KC CD F+ N +L+RH+ HE
Sbjct: 3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHE 34
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 27.9 bits (63), Expect = 7.0
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 455 NMLDSSCNECGKQYKWESFLQKHKKICTTTCKSCG 489
N+ + C C K+Y E ++K + C C
Sbjct: 118 NVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCN 152
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 25.6 bits (55), Expect = 7.1
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 363 KDNTERPFQCNDCGSTFRLKRHLNSHINRLH 393
+ +E+P C C + R R+L H+ H
Sbjct: 18 RSQSEQPATCPICYAVIRQSRNLRRHLELRH 48
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 25.2 bits (55), Expect = 7.1
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 363 KDNTERPFQC--NDCGSTFRLKRHLNSHI 389
K+ ++ F+C C TF+ + ++ SHI
Sbjct: 12 KEMPDKTFECLFPGCTKTFKRRYNIRSHI 40
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 24.8 bits (53), Expect = 7.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 368 RPFQCNDCGSTFRLKRHLNSH 388
RP+ C+ CG F LK + +H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETH 22
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 28.3 bits (63), Expect = 7.6
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 234 SFSNNSTLKVHSTTHADQGRFKC 256
S L++ +D+G ++C
Sbjct: 360 QIVGGSNLRILGVVKSDEGFYQC 382
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.5 bits (55), Expect = 7.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 224 KPCKCEVCGKSFSNNSTLKVHST 246
KP C++CGK + N L H
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYA 28
>1m0w_A Glutathione synthetase; amine/carboxylate ligase, structural
genomics, PSI, protein structure initiative; HET: ANP
3GC; 1.80A {Saccharomyces cerevisiae} SCOP: c.30.1.4
d.142.1.6 PDB: 1m0t_A*
Length = 491
Score = 28.2 bits (62), Expect = 7.9
Identities = 22/136 (16%), Positives = 38/136 (27%), Gaps = 14/136 (10%)
Query: 350 GIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNC---VHCQAIF 406
GI R + + + N +F L+ ++RLH I+
Sbjct: 125 GIFRSDYLIDKKKGTEQIKQVEFNTVSVSFA---GLSEKVDRLHSYLNRANKYDPKGPIY 181
Query: 407 TNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSSCNECGK 466
++ + S KA + K T + V RN+ D
Sbjct: 182 NDQNMVISDSGYLLSKALAKAVESYKSQQSSSTTSDPIVAFIVQRNERNVFD-------- 233
Query: 467 QYKWESFLQKHKKICT 482
Q E L + +
Sbjct: 234 QKVLELNLLEKFGTKS 249
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 28.2 bits (63), Expect = 8.2
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 237 NNSTLKVHSTTHADQGRFKC 256
++ TL + T D G + C
Sbjct: 395 SDGTLNFTNVTVQDTGMYTC 414
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 28.2 bits (62), Expect = 8.6
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 236 SNNSTLKVHSTTHADQGRFKC 256
N L + D+G + C
Sbjct: 717 DGNRNLTIRRVRKEDEGLYTC 737
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.2 bits (54), Expect = 8.7
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 421 SGPNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDSS 460
SG K+ +C +C F +L H +H +N SS
Sbjct: 6 SGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSS 45
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 28.1 bits (61), Expect = 8.8
Identities = 27/275 (9%), Positives = 53/275 (19%), Gaps = 5/275 (1%)
Query: 222 KLKPCKCEVCGKSFSNNSTLKVHSTTHADQGRFKCPICGKHIRHKQTFDDHMNMHSGDVK 281
+L+ + + CP +
Sbjct: 250 QLEHNFNAKYTYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDICPKA 309
Query: 282 Y--TCTYCEKSFLYKKSLKHHLFVHSSEFTSKCSVCDRLYKSDYLRRKHERSHSSIFQCR 339
T S S F++ ++ D + R
Sbjct: 310 CDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFR 369
Query: 340 ICDKILSNIQGIRRHMENMHNSDKDNTERPFQCNDCGSTFRLKRHLNSHINRLHKLKLNC 399
+I + I+ NM + + S L I L L
Sbjct: 370 TVREITGFLN-IQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKE 428
Query: 400 VHCQAIFTNKQRLNYHILTKHSGPNYKAWKCEKCDMRFVTNKNLKRHMKVHEKNRNMLDS 459
+ I+ + T + + + + K + N
Sbjct: 429 ISAGNIYITDNSNLCYYHTINWTTLFST--INQRIVIRDNRKAENCTAEGMVCNHLCSSD 486
Query: 460 SCNECGKQYKWESFLQKHKKICTTTCKSCGKRYSS 494
C G +IC +C +
Sbjct: 487 GCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFRE 521
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 24.6 bits (53), Expect = 9.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 431 EKCDMRFVTNKNLKRHMKVHEKN 453
CD FV N +L RH K H++
Sbjct: 9 PGCDKAFVRNHDLIRHKKSHQEK 31
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2,
initiation factor 2 alpha subunit, initiation factor 2
beta subunit; 2.80A {Sulfolobus solfataricus} PDB:
2nxu_A 2qmu_C* 3v11_C*
Length = 139
Score = 26.8 bits (59), Expect = 9.6
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 461 CNECGKQYKWESFLQKHKKICTTTCKSCGKRYS 493
C+ C ++ L+K KK C +CG +
Sbjct: 106 CSTCKS---LDTILKKEKKSWYIVCLACGAQTP 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.423
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,518,235
Number of extensions: 432732
Number of successful extensions: 3708
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3085
Number of HSP's successfully gapped: 1090
Length of query: 514
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 416
Effective length of database: 3,965,535
Effective search space: 1649662560
Effective search space used: 1649662560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.2 bits)