BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2974
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Query: 26 FSKIGDSFKSQDKDECMTNNG---GCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCK 82
F+ + + D DEC C H C N IG Y CSC GY L + C+
Sbjct: 109 FTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSD 168
Query: 83 YEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLNPTDIISISE 131
T GVI +P+ P+ YP EC++ G + L DI I +
Sbjct: 169 NLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIED 217
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 90 GVIKTPNHPDYYPSKRECIWHFTTTPGHRIKL 121
G I++P +PD YPS E W+ T G RIKL
Sbjct: 10 GQIQSPGYPDSYPSDSEVTWNITVPDGFRIKL 41
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Query: 26 FSKIGDSFKSQDKDECMTNNG---GCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCK 82
F+ + + D DEC C H C N IG Y CSC GY L + C+
Sbjct: 109 FTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSD 168
Query: 83 YEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLNPTDIISISE 131
T GVI +P+ P+ YP EC++ G + L DI I +
Sbjct: 169 NLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIED 217
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 90 GVIKTPNHPDYYPSKRECIWHFTTTPGHRIKL 121
G I++P +PD YPS E W+ T G RIKL
Sbjct: 10 GQIQSPGYPDSYPSDSEVTWNITVPDGFRIKL 41
>pdb|1NT0|A Chain A, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
pdb|1NT0|G Chain G, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
Length = 286
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 16 NESPHDTLTVFSKIGDSFKSQDKDECMTNNG---GCQHECRNTIGSYICSCHNGYTLLEN 72
NE P F + ++D DEC T+ G C H C +G Y CSC GY L +N
Sbjct: 104 NEKPFTGFEAF------YAAEDVDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYILHQN 157
Query: 73 GHDCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN 122
H C T +G + +P +P YP C ++ G I L+
Sbjct: 158 KHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLD 207
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 38 KDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCK-------EGGCKYEITAPNG 90
++ C NNGGC +C+ G+ C+CH GY L E+G C+ EG C T G
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEG 62
Query: 91 VIKTPNHPDY--YPSKREC 107
+ Y P +R C
Sbjct: 63 AFQCWCEAGYELRPDRRSC 81
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 38 KDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 78
K+ C NNGGC H C + +Y C+C G+ + N H C +
Sbjct: 347 KNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKI-NSHACAQ 386
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 31 DSFKSQDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGG 80
D QD +EC G C C N+ G++ C C GY L + CK G
Sbjct: 37 DGRTCQDVNEC-AEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALG 85
>pdb|2WNO|A Chain A, X-Ray Structure Of Cub_c Domain From Tsg-6
Length = 149
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 39/114 (34%), Gaps = 38/114 (33%)
Query: 81 CKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN------------------ 122
C T P + K+P P+ Y + C WH G RI L+
Sbjct: 7 CGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDDPGCLADYVE 66
Query: 123 --------------------PTDIISISEGLLVRFRSDDTVVGKGFSASYIAID 156
P DIIS + ++F SD +V GF Y+A+D
Sbjct: 67 IYDSYDDVHGFVGRYCGDELPDDIISTGNVMTLKFLSDASVTAGGFQIKYVAMD 120
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 8 IEDKCNNCNESPHDTLTVFSKIGDSFKSQDKDECMTNNG---GCQHECRNTIGSYICSCH 64
I + + NE P F + ++D DEC G C H C N +G + CSC
Sbjct: 100 ITFRSDYSNEKPFTGFEAF------YAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCR 153
Query: 65 NGYTLLENGHDCKE 78
GY L N C E
Sbjct: 154 AGYVLHRNKRTCSE 167
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 42.0 bits (97), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 39 DECMTNNGGCQHECRNTIGS--YICSCHNGYTLLENGHDCKEGGCKYEITA 87
+ C +NGGC H C + Y C+C G LLENG CK+G + + A
Sbjct: 265 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA 315
Score = 30.4 bits (67), Expect = 0.61, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
+ C NGGC H C C+C G+ L+ + C
Sbjct: 571 NPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTC 608
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 42.0 bits (97), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 39 DECMTNNGGCQHECRNTIGS--YICSCHNGYTLLENGHDCKEGGCKYEITA 87
+ C +NGGC H C + Y C+C G LLENG CK+G + + A
Sbjct: 273 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA 323
Score = 30.4 bits (67), Expect = 0.62, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
+ C NGGC H C C+C G+ L+ + C
Sbjct: 579 NPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTC 616
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 41 CMTNNGGCQHECRNTIGS--YICSCHNGYTLLENGHDCKEGGCKYEITA 87
C +NGGC H C + Y C+C G LLENG CK+G + + A
Sbjct: 267 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA 315
>pdb|1APQ|A Chain A, Structure Of The Egf-Like Module Of Human C1r, Nmr, 19
Structures
Length = 53
Score = 40.4 bits (93), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 37 DKDECMTNNGG--------CQHECRNTIGSYICSCHNGYTLLENGHDCK 77
D DEC + + CQH C N +G Y CSC GY L E+ H C+
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
>pdb|3KQ4|B Chain B, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|D Chain D, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|F Chain F, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
Length = 457
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 81 CKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKL 121
C +T G I++P HP+ YP C WH P H I L
Sbjct: 1 CGEILTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHL 41
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 38/116 (32%)
Query: 75 DCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKL------------- 121
D GC +T +G +PN+P Y EC W ++ G +L
Sbjct: 228 DGSSTGCGGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHHPNC 287
Query: 122 -------------------------NPTDIISISEGLLVRFRSDDTVVGKGFSASY 152
P I S + + ++ R+D+ G+GF A Y
Sbjct: 288 TLDYLAVYDGPSSNSHLLTQLCGDEKPPLIRSSGDSMFIKLRTDEGQQGRGFKAEY 343
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 41 CMTNNGGCQHECRNTIGS--YICSCHNGYTLLENGHDCKEG 79
C +NGGC H C + Y C+C G LLENG CK+G
Sbjct: 270 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG 310
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NG C C S +CSC GYTL +NG C
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 34 KSQDKDECMTNNGGCQHECRNTIGSYICSCHNGY 67
K +D D+C T+ Q +C++ +G Y C+C G+
Sbjct: 38 KYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NG C C S +CSC GYTL +NG C
Sbjct: 44 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 79
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 37 DKDECMTNNGGCQHECRNTIGSYICSCHNGY 67
D D+C T+ Q +C++ +G Y C+C G+
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 31
>pdb|4GZ9|A Chain A, Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2b1b2)
pdb|4GZA|H Chain H, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
Length = 577
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 49/141 (34%)
Query: 67 YTLLENGHDCKEGGCKYEITAPNGVIKTPNHPDYYPSKREC------------------- 107
Y + + G +C + TAP GVIK+P P+ YP+ EC
Sbjct: 120 YEIFKRGPECSQ-----NYTAPTGVIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESF 174
Query: 108 --------------------IWHFTTTPGHRI-----KLNPTDIISISEGLLVRFRSDDT 142
IW G I + P I S S L + F +D
Sbjct: 175 DLEQDSNPPGGMFCRYDRLEIWDGFPEVGPHIGRYCGQKTPGRIRSSSGVLSMVFYTDSA 234
Query: 143 VVGKGFSASYIAIDTQGSKEF 163
+ +GFSA+Y + + S++F
Sbjct: 235 IAKEGFSANYSVLQSSISEDF 255
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 120 KLNPTDIISISEGLLVRFRSDDTVVGKGFSASY 152
K+ P+ ++S L ++F SD G GFS Y
Sbjct: 88 KIAPSPVVSSGPFLFIKFVSDYETHGAGFSIRY 120
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 70
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 32
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 34 KSQDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGG 80
+ +D DEC + C C N G Y C C G+ L + CK G
Sbjct: 36 RCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG 81
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 41 CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 76
C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 91 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 37 DKDECMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 76
D+ C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 87 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
>pdb|2GD4|L Chain L, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|A Chain A, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 58
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NG C C S +CSC GYTL +NG C
Sbjct: 5 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 40
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 70
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 41 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 72
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 34 KSQDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGG 80
+ +D DEC + C C N G Y C C G+ L + CK G
Sbjct: 76 RCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG 121
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NG C C S +CSC GYTL +NG C
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 34 KSQDKDECMTNNGGCQHECRNTIGSYICSCHNGY 67
K +D D+C T+ Q +C++ +G Y C+C G+
Sbjct: 38 KYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 37 DKDECMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 76
D+ C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 87 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 37 DKDECMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 76
D+ C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 87 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
>pdb|2BOK|L Chain L, Factor Xa- Cation
pdb|2JKH|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|K Chain K, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|L Chain L, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|K Chain K, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBW|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 55
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NG C C S +CSC GYTL +NG C
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
>pdb|3KL6|B Chain B, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
Length = 57
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NG C C S +CSC GYTL +NG C
Sbjct: 7 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 42
>pdb|2Y5F|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|L Chain L, Factor Xa - Cation Inhibitor Complex
Length = 54
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NG C C S +CSC GYTL +NG C
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 38
>pdb|1KLI|L Chain L, Cofactor-And Substrate-Assisted Activation Of Factor
Viia
pdb|1KLJ|L Chain L, Crystal Structure Of Uninhibited Factor Viia
Length = 69
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 37 DKDECMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 76
D+ C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 4 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 44
>pdb|2D1J|B Chain B, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2P3F|L Chain L, Crystal Structure Of The Factor XaNAP5 COMPLEX
pdb|2EI6|B Chain B, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|B Chain B, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|B Chain B, Factor Xa In Complex With The Inhibitor
(1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,
N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|B Chain B, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|B Chain B, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|B Chain B, Factor Xa In Complex With D102-4380
pdb|3TK6|B Chain B, Factor Xa In Complex With D46-5241
Length = 54
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGG 80
C +NG C C S +CSC GYTL +NG C G
Sbjct: 5 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 44
>pdb|2BMG|A Chain A, Crystal Structure Of Factor Xa In Complex With 50
Length = 53
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NG C C S +CSC GYTL +NG C
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
>pdb|2BQ6|A Chain A, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|A Chain A, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
45
Length = 52
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGG 80
C +NG C C S +CSC GYTL +NG C G
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 43
>pdb|1FJS|L Chain L, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1V3X|B Chain B, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|2FZZ|L Chain L, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|L Chain L, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|L Chain L, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|L Chain L, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|L Chain L, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2P16|L Chain L, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,
4- C]pyridine-3-Carboxamide
pdb|2P3U|A Chain A, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|A Chain A, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|3CEN|L Chain L, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|L Chain L, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,
4-C]pyridin- 7(4h)-One
pdb|3FFG|L Chain L, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,
4-C]pyridin- 7(4h)-One
pdb|3KQB|L Chain L, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|L Chain L, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon
Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|L Chain L, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|L Chain L, Factor Xa In Complex With The Inhibitor
3-Methyl-1-(3-(5- Ox
Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3M36|L Chain L, Factor Xa In Complex With The Inhibitor
1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-
3- (Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|L Chain L, Factor Xa In Complex With The Inhibitor
1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
pdb|1Z6E|L Chain L, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
Length = 52
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NG C C S +CSC GYTL +NG C
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 38
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NG C C S +CSC GYTL +NG C
Sbjct: 46 CSLDNGDCDQFCHEEQASVVCSCARGYTLADNGKAC 81
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 70
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 313 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 344
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 34 KSQDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGG 80
+ +D DEC + C C N G Y C C G+ L + CK G
Sbjct: 348 RCEDIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG 393
>pdb|2RA0|L Chain L, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
Length = 51
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGG 80
C +NG C C S +CSC GYTL +NG C G
Sbjct: 2 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 41
>pdb|1MQ5|L Chain L, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|L Chain L, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|2W26|B Chain B, Factor Xa In Complex With Bay59-7939
Length = 51
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGG 80
C +NG C C S +CSC GYTL +NG C G
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 42
>pdb|2PR3|B Chain B, Factor Xa Inhibitor
pdb|2Q1J|B Chain B, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2PHB|B Chain B, An Orally Efficacious Factor Xa Inhibitor
pdb|2W3I|B Chain B, Crystal Structure Of Fxa In Complex With
4,4-disubstituted Pyrrolidine-1,2-dicarboxamide
Inhibitor 2
pdb|2W3K|B Chain B, Crystal Structure Of Fxa In Complex With
4,4-Disubstituted Pyrrolidine-1,2-Dicarboxamide
Inhibitor 1
pdb|3LIW|B Chain B, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
Length = 51
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGG 80
C +NG C C S +CSC GYTL +NG C G
Sbjct: 2 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 41
>pdb|1HCG|B Chain B, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
Length = 51
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NG C C S +CSC GYTL +NG C
Sbjct: 1 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 36
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NG C C S +CSC GYTL +NG C
Sbjct: 89 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 124
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 34 KSQDKDECMTNNGGCQHECRNTIGSYICSCHNGY 67
K +D D+C T+ Q +C++ +G Y C+C G+
Sbjct: 43 KYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 76
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 70
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 295 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 326
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 34 KSQDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGG 80
+ +D DEC + C C N G Y C C G+ L + CK G
Sbjct: 330 RCEDIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG 375
>pdb|1JBU|L Chain L, Coagulation Factor Vii Zymogen (Egf2PROTEASE) IN COMPLEX
WITH Inhibitory Exosite Peptide A-183
pdb|1YGC|L Chain L, Short Factor Viia With A Small Molecule Inhibitor
Length = 63
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 41 CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 76
C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 38
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 34.3 bits (77), Expect = 0.039, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 39 DECMTNNGGCQHECRNT-IGSYICSCHNGYTLLENGHDC 76
+EC ++NG C H C +G ++C C Y+L + C
Sbjct: 271 NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 309
Score = 28.9 bits (63), Expect = 1.9, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 41 CMTNNGGCQHECR-NTIGSYICSCHNGYTLLENGHDC 76
C +NGGC H C G+ CSC LL++ C
Sbjct: 587 CAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 623
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 34.3 bits (77), Expect = 0.041, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 39 DECMTNNGGCQHECRNT-IGSYICSCHNGYTLLENGHDC 76
+EC ++NG C H C +G ++C C Y+L + C
Sbjct: 264 NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 302
Score = 30.0 bits (66), Expect = 0.75, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 41 CMTNNGGCQHECR-NTIGSYICSCHNGYTLLENGHDCKE 78
C +NGGC H C G+ CSC LL++ C E
Sbjct: 580 CAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGE 618
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 34.3 bits (77), Expect = 0.041, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 39 DECMTNNGGCQHECRNT-IGSYICSCHNGYTLLENGHDC 76
+EC ++NG C H C +G ++C C Y+L + C
Sbjct: 266 NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 304
Score = 29.6 bits (65), Expect = 0.92, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 41 CMTNNGGCQHECR-NTIGSYICSCHNGYTLLENGHDCKEGGCK 82
C +NGGC H C G+ CSC LL++ C GG K
Sbjct: 582 CAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC--GGTK 622
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 37 DKDECMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 76
D+ C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 39 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 79
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule,
S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NG C C S +CSC GYTL +NG C
Sbjct: 46 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 81
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-
(2-oxo-2-
Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-
(2-oxo-2-
Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2-
Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2-
Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NG C C S +CSC GYTL +NG C
Sbjct: 45 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 80
>pdb|1W8B|L Chain L, Factor7 - 413 Complex
Length = 57
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 41 CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 76
C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 4 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 40
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 38 KDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
K+ C NNGGC H C + +Y C+C G+ + N H C
Sbjct: 304 KNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKI-NSHAC 341
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGG 80
+EC G C C N+ G++ C C GY L + CK G
Sbjct: 2 NEC-AEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALG 42
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NG C C S +CSC GYTL +NG C
Sbjct: 44 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 79
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NG C C S +CSC GYTL +NG C
Sbjct: 45 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 80
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 37 DKDECMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 76
D+ C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 46 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 86
>pdb|1CVW|L Chain L, Crystal Structure Of Active Site-inhibited Human
Coagulation Factor Viia (des-gla)
pdb|1W7X|L Chain L, Factor7- 413 Complex
pdb|4ISI|L Chain L, Structure Of Factor Viia In Complex With The Inhibitor
(6s)-n-(4-
Carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,
8-diethyl-4-oxo-
4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
Length = 55
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 41 CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 76
C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 38
>pdb|2QQK|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
pdb|2QQL|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
Length = 579
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 81 CKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLNPTDIISISEGLLVRFRSD 140
C T+PNG I++P P+ YP +C + P I I + L+ D
Sbjct: 127 CSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEI---------ILQFLIFDLEHD 177
Query: 141 DTVVGKG 147
VG+G
Sbjct: 178 PLQVGEG 184
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 33/102 (32%), Gaps = 39/102 (38%)
Query: 90 GVIKTPNHPDYYPSKRECIW-HFTTTPGHRIKLN-------------------------- 122
G I +P +P YPS + C W + P +I LN
Sbjct: 16 GYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEKHDCKYDFIEIRDGDSES 75
Query: 123 ------------PTDIISISEGLLVRFRSDDTVVGKGFSASY 152
P IIS L ++F SD G GFS Y
Sbjct: 76 ADLLGKHCGNIAPPTIISSGSMLYIKFTSDYARQGAGFSLRY 117
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 37 DKDECMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 76
D+ C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 40 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 80
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 37 DKDECMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 76
D+ C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 39 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 79
>pdb|2QQM|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-1
Length = 450
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 48/135 (35%), Gaps = 45/135 (33%)
Query: 74 HDCKEGG-CKYEITAPNGVIKTPNHPDYYPSKREC------------------------- 107
H K G C T P+GVIK+P P+ YP+ EC
Sbjct: 3 HMFKRGPECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDS 62
Query: 108 --------------IWHFTTTPGHRI-----KLNPTDIISISEGLLVRFRSDDTVVGKGF 148
IW G I + P I S S L + F +D + +GF
Sbjct: 63 NPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGF 122
Query: 149 SASYIAIDTQGSKEF 163
SA+Y + + S++F
Sbjct: 123 SANYSVLQSSVSEDF 137
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 35 SQDKDECMTNNGGCQH--ECRNTIGSYICSCHNGYT 68
+QD DEC C+H +C NT+GS+ C C GYT
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT 37
>pdb|2BZ6|L Chain L, Orally Available Factor7a Inhibitor
Length = 53
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 41 CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 76
C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 38
>pdb|2QQO|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-2
pdb|2QQO|B Chain B, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-2
Length = 460
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 81 CKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLNPTDIISISEGLLVRFRSD 140
C T+PNG I++P P+ YP +C + P I I + L+ D
Sbjct: 8 CSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEI---------ILQFLIFDLEHD 58
Query: 141 DTVVGKG 147
VG+G
Sbjct: 59 PLQVGEG 65
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 33.5 bits (75), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 70
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 30 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 61
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 33.1 bits (74), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 31 DSFKSQDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLL 70
+ K +EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 38 EPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 77
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 70
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 34
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding
Epidermal Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 70
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 34
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 36 QDKDECMTNNGGCQH--ECRNTIGSYICSCHNGYT 68
QD DEC C+H +C NT+GS+ C C GYT
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT 35
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 70
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 6 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 37
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 36 QDKDECMTNNGGCQH-ECRNTIGSYICSCHNGYTLLENGHDC 76
+D DEC G CQ +C NT GS+ C C GY L E+ C
Sbjct: 120 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 36 QDKDECMTNNGGCQH-ECRNTIGSYICSCHNGYTLLENGHDC 76
+D DEC G CQ +C NT GS+ C C GY L E+ C
Sbjct: 120 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 38 KDECM-TNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
K+EC GCQH C SY CSC GY L E+ C
Sbjct: 2 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQC 41
>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
pdb|1NZI|B Chain B, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
Length = 159
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 26 FSKIGDSFKSQDKDECMTN-NGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
F+ + + D +EC + C H C N IG Y CSC Y L ++ +C
Sbjct: 105 FTGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 90 GVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLNPTDI-ISISEGLL---VRFRSDDTVVG 145
G I +PN+P YPS+ E W G+ I L T + I +SE V+ S DT G
Sbjct: 6 GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTEEG 65
Query: 146 K 146
+
Sbjct: 66 R 66
>pdb|3KCG|L Chain L, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 59
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 41 CMTNNGGCQHECRNTI-GSYICSCHNGYTLLENGHDCK 77
C NG C+ C+N+ +CSC GY L EN C+
Sbjct: 5 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCE 42
>pdb|2WPH|E Chain E, Factor Ixa Superactive Triple Mutant
pdb|2WPI|E Chain E, Factor Ixa Superactive Double Mutant
pdb|2WPJ|E Chain E, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|E Chain E, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|E Chain E, Factor Ixa Superactive Triple Mutant, Edta-Soaked
pdb|2WPM|E Chain E, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 59
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 41 CMTNNGGCQHECRNTI-GSYICSCHNGYTLLENGHDCK 77
C NG C+ C+N+ +CSC GY L EN C+
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCE 39
>pdb|1RFN|B Chain B, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|B Chain B, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|D Chain D, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|B Chain B, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 57
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 41 CMTNNGGCQHECRNTI-GSYICSCHNGYTLLENGHDCK 77
C NG C+ C+N+ +CSC GY L EN C+
Sbjct: 3 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCE 40
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 38 KDECMTN-NGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
K+EC GCQH C SY CSC GY L E+ C
Sbjct: 43 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQC 82
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 70
+EC+ NNGGC + C + Y C C +G+ L+
Sbjct: 30 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLV 61
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTL 69
C +NGGC H C +G CSC GY L
Sbjct: 57 CSLDNGGCTHYCLEEVGWRRCSCAPGYKL 85
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTL 69
C +NGGC H C +G CSC GY L
Sbjct: 50 CSLDNGGCTHYCLEEVGWRRCSCAPGYKL 78
>pdb|1KIG|L Chain L, Bovine Factor Xa
Length = 51
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NGGC CR CSC +GY L ++ C
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSC 36
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 70
+EC+ NNGGC + C + Y C C +G+ L+
Sbjct: 6 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLV 37
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 34 KSQDKDECMTNNGGCQHE-CRNTIGSYICSCHNGYTLLENGHDC 76
+ +D DEC G C++ C NT GS+ C C +G TL G C
Sbjct: 103 QCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
>pdb|3POB|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain In Complex With
The Collagen- Like Domain Of Mbl
pdb|3POE|A Chain A, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POF|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POF|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|A Chain A, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|B Chain B, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|C Chain C, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POI|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Methylamine
pdb|3POI|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Methylamine
pdb|3POJ|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Ethylamine
pdb|3POJ|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Ethylamine
Length = 115
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 85 ITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLNPTDIISISE 131
T G I +P++P+ YP EC + G + L DI I +
Sbjct: 9 FTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIED 55
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 36 QDKDECMTNNGGCQHE--CRNTIGSYICSCHNGY 67
QD DEC + C C NT+GSY C C G+
Sbjct: 94 QDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGW 127
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 106 ECIWHFTTTPGHRIKLNPTDIISISEGLLVRFRS 139
E +++F T GHR+ L P S++ LL + RS
Sbjct: 86 EQMFNFITKGGHRVALRPEMTPSLARQLLAKGRS 119
>pdb|1G1Q|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1R|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1S|A Chain A, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
pdb|1G1S|B Chain B, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
Length = 162
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 49 QHECRNTIGSYICSCHNGY 67
Q EC TIG+Y CSC+ G+
Sbjct: 130 QGECLETIGNYTCSCYPGF 148
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 35 SQDKDECMTNNGGCQH-ECRNTIGSYICSCHNGYTLLEN----------GHDCKEGGCK- 82
+ D DEC + C+H +C NT GSY C C GY L N G+ C G CK
Sbjct: 2 AVDMDECKEPDV-CKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKN 60
Query: 83 ----YEITAPNGVIKTP 95
+E T G P
Sbjct: 61 VIGGFECTCEEGFEPGP 77
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 26 FSKIGDSFKSQDKDECMTNNGGCQHECRNTIGSYICSCHNGY 67
F I + D DEC N C+N IG + C+C G+
Sbjct: 32 FGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGF 73
>pdb|1FSB|A Chain A, Structure Of The Egf Domain Of P-Selectin, Nmr, 19
Structures
Length = 40
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 49 QHECRNTIGSYICSCHNGY 67
Q EC TIG+Y CSC+ G+
Sbjct: 12 QGECLETIGNYTCSCYPGF 30
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 41 CMTNNGGCQHECRNTIGSYI-CSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTPNHP 98
C NG C+ C+ S + CSC GY L + CK + P G + + P
Sbjct: 88 CNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPA-----VPFPCGRVSVSHSP 141
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 26 FSKIGDSFKSQDKDE-CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDCKEGGCKY 83
+ ++G K+ + D C NG C+ C+ S +CSC GY L + CK
Sbjct: 72 WCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPA---- 127
Query: 84 EITAPNGVIKTPNHP 98
+ P G + + P
Sbjct: 128 -VPFPCGRVSVSHSP 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,095,149
Number of Sequences: 62578
Number of extensions: 262235
Number of successful extensions: 581
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 176
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)