RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2974
(186 letters)
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 106 bits (265), Expect = 2e-28
Identities = 41/163 (25%), Positives = 58/163 (35%), Gaps = 40/163 (24%)
Query: 32 SFKSQDKDECM---TNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAP 88
+ + D DEC C H C N IG Y CSC GY L + C+ T
Sbjct: 115 HYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQR 174
Query: 89 NGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN-------------------------- 122
GVI +P+ P+ YP EC++ G + L
Sbjct: 175 TGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVGP 234
Query: 123 -----------PTDIISISEGLLVRFRSDDTVVGKGFSASYIA 154
P I + S +L+ F SD++ +G+ SY A
Sbjct: 235 KVLGPFCGEKAPEPISTQSHSVLILFHSDNSGENRGWRLSYRA 277
Score = 63.0 bits (153), Expect = 2e-12
Identities = 28/119 (23%), Positives = 40/119 (33%), Gaps = 44/119 (36%)
Query: 83 YEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN-------------------- 122
E+ G I++P +PD YPS E W+ T G RIKL
Sbjct: 3 VELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVE 62
Query: 123 ----------------------PTDIISISEGLLVRFRSDDTV--VGKGFSASYIAIDT 157
++S + + FRSD + GF A Y+A+D
Sbjct: 63 TEDQVLATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHYMAVDV 121
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 98.1 bits (244), Expect = 6e-25
Identities = 41/169 (24%), Positives = 59/169 (34%), Gaps = 40/169 (23%)
Query: 32 SFKSQDKDECM---TNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAP 88
+ + D DEC C H C N IG Y CSC GY L + C+ T
Sbjct: 115 HYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQR 174
Query: 89 NGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN-------------------------- 122
GVI +P+ P+ YP EC++ G + L
Sbjct: 175 TGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVGP 234
Query: 123 -----------PTDIISISEGLLVRFRSDDTVVGKGFSASYIAIDTQGS 160
P I + S +L+ F SD++ +G+ SY A +
Sbjct: 235 KVLGPFCGEKAPEPISTQSHSVLILFHSDNSGENRGWRLSYRAAGNECP 283
Score = 59.2 bits (143), Expect = 6e-11
Identities = 28/119 (23%), Positives = 40/119 (33%), Gaps = 44/119 (36%)
Query: 83 YEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN-------------------- 122
E+ G I++P +PD YPS E W+ T G RIKL
Sbjct: 3 VELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVE 62
Query: 123 ----------------------PTDIISISEGLLVRFRSDDTV--VGKGFSASYIAIDT 157
++S + + FRSD + GF A Y+A+D
Sbjct: 63 TEDQVLATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHYMAVDV 121
Score = 32.3 bits (73), Expect = 0.079
Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 26/82 (31%)
Query: 37 DKDECMTNNGGCQHECRNTIGSY------ICSCHNGYTLLENGHD--------------- 75
+EC + + Y + SC GY +L++ +
Sbjct: 278 AGNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWS 337
Query: 76 -----CKEGGCKYEITAPNGVI 92
CK+ E + +
Sbjct: 338 NKIPTCKKNEIDLESELKSEQV 359
Score = 27.3 bits (60), Expect = 3.6
Identities = 4/51 (7%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 80 GCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLNPTDIISIS 130
C +G I+ ++ + G+++ + ++ +
Sbjct: 281 ECPELQPPVHGKIEPSQAKYFFK----DQVLVSCDTGYKVLKDNVEMDTFQ 327
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB
domain, EGF like domain., hydrolase, sugar binding
protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP:
b.23.1.1 b.23.1.1 g.3.11.1
Length = 286
Score = 97.0 bits (241), Expect = 7e-25
Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 40/164 (24%)
Query: 33 FKSQDKDECMTNNG---GCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPN 89
+ ++D DEC T+ G C H C +G Y CSC GY L +N H C T +
Sbjct: 115 YAAEDVDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYILHQNKHTCSALCSGQVFTGRS 174
Query: 90 GVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN--------------------------- 122
G + +P +P YP C ++ G I L+
Sbjct: 175 GFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHPEAQCPYDSLKIQTDKR 234
Query: 123 ----------PTDIISISEGLLVRFRSDDTVVGKGFSASYIAID 156
P I + S + + F +D++ G+ Y +
Sbjct: 235 EYGPFCGKTLPPRIETDSNKVTITFTTDESGNHTGWKIHYTSTA 278
Score = 51.1 bits (122), Expect = 3e-08
Identities = 16/108 (14%), Positives = 26/108 (24%), Gaps = 42/108 (38%)
Query: 87 APNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN------------------------ 122
G + +P P+ Y + ++ W T PG R++L
Sbjct: 6 PVFGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELSYRCEYDFVKLTSGTK 65
Query: 123 ------------------PTDIISISEGLLVRFRSDDTVVGKGFSASY 152
S+ L V F SD +
Sbjct: 66 VLATLCGQESTDTERAPGNDTFYSLGPSLKVTFHSDYSNEKPFTGFEA 113
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell
adhesion, extracellular matrix; 2.30A {Homo sapiens}
Length = 149
Score = 78.2 bits (193), Expect = 5e-19
Identities = 28/115 (24%), Positives = 39/115 (33%), Gaps = 38/115 (33%)
Query: 80 GCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN----------------- 122
C T P + K+P P+ Y + C WH G RI L+
Sbjct: 6 ECGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDDPGCLADYV 65
Query: 123 ---------------------PTDIISISEGLLVRFRSDDTVVGKGFSASYIAID 156
P DIIS + ++F SD +V GF Y+A+D
Sbjct: 66 EIYDSYDDVHGFVGRYCGDELPDDIISTGNVMTLKFLSDASVTAGGFQIKYVAMD 120
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 80.1 bits (197), Expect = 3e-18
Identities = 30/124 (24%), Positives = 40/124 (32%), Gaps = 45/124 (36%)
Query: 74 HDCKEG-GCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN---------- 122
H K G C T P+GVIK+P P+ YP+ EC + I L
Sbjct: 3 HMFKRGPECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDS 62
Query: 123 ----------------------------------PTDIISISEGLLVRFRSDDTVVGKGF 148
P I S S L + F +D + +GF
Sbjct: 63 NPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGF 122
Query: 149 SASY 152
SA+Y
Sbjct: 123 SANY 126
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding
site, complex with ethylamine, COMP protein, lectin
pathway of complement; 1.45A {Rattus norvegicus} PDB:
3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Length = 115
Score = 72.3 bits (178), Expect = 4e-17
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 37/107 (34%)
Query: 85 ITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN---------------------- 122
T G I +P++P+ YP EC + G + L
Sbjct: 9 FTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHPEVPCPYDYIKI 68
Query: 123 ---------------PTDIISISEGLLVRFRSDDTVVGKGFSASYIA 154
P I + S + + FRSD++ +G+ SY A
Sbjct: 69 KAGSKVWGPFCGEKSPEPISTQSHSIQILFRSDNSGENRGWRLSYRA 115
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease
M disulfide bond, glycoprotein, secreted, transport,
choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo
sapiens}
Length = 457
Score = 74.5 bits (183), Expect = 3e-16
Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 38/123 (30%)
Query: 74 HDCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN----------- 122
D GC +T +G +PN+P Y EC W ++ G +L
Sbjct: 227 WDGSSTGCGGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHHPN 286
Query: 123 ---------------------------PTDIISISEGLLVRFRSDDTVVGKGFSASYIAI 155
P I S + + ++ R+D+ G+GF A Y
Sbjct: 287 CTLDYLAVYDGPSSNSHLLTQLCGDEKPPLIRSSGDSMFIKLRTDEGQQGRGFKAEYRQT 346
Query: 156 DTQ 158
Sbjct: 347 CEN 349
Score = 73.8 bits (181), Expect = 5e-16
Identities = 26/114 (22%), Positives = 37/114 (32%), Gaps = 36/114 (31%)
Query: 81 CKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN------------------ 122
C +T G I++P HP+ YP C WH P H I L
Sbjct: 1 CGEILTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEFHYNCTNDYLE 60
Query: 123 ------------------PTDIISISEGLLVRFRSDDTVVGKGFSASYIAIDTQ 158
P + S L++ F +D + +GF +Y AI
Sbjct: 61 VYDTDSETSLGRYCGKSIPPSLTSSGNSLMLVFVTDSDLAYEGFLINYEAISAA 114
Score = 61.1 bits (148), Expect = 2e-11
Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 35/107 (32%)
Query: 81 CKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN------------------ 122
+ G++++ +P+ Y + C W T G+ +
Sbjct: 349 NVVIVNQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFDLEHHINCSTDYLE 408
Query: 123 ----------------PTDIISISEGLLVRFRSDDTVV-GKGFSASY 152
P + S L V +D KGF +
Sbjct: 409 LYDGPRQMGRYCGVDLPPPGSTTSSKLQVLLLTDGVGRREKGFQMQW 455
Score = 52.6 bits (126), Expect = 1e-08
Identities = 28/121 (23%), Positives = 39/121 (32%), Gaps = 39/121 (32%)
Query: 76 CKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN------------- 122
C + T G +PN P+ YP+ ECI+ T G I ++
Sbjct: 112 SAATACLQDYTDDLGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSLEEAIGNY 171
Query: 123 --------------------------PTDIISISEGLLVRFRSDDTVVGKGFSASYIAID 156
P IIS S L ++F+SD GFSA +
Sbjct: 172 YTDFLEIRDGGYEKSPLLGIFYGSNLPPTIISHSNKLWLKFKSDQIDTRSGFSAYWDGSS 231
Query: 157 T 157
T
Sbjct: 232 T 232
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted,
protease, hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 66.3 bits (162), Expect = 2e-15
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 38 KDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 78
+ C +NG C C S +CSC GYTL +NG C
Sbjct: 1 RKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP 41
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex (seminal
plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Length = 109
Score = 67.8 bits (166), Expect = 2e-15
Identities = 14/107 (13%), Positives = 30/107 (28%), Gaps = 36/107 (33%)
Query: 80 GCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN----------------- 122
C +T G I T P EC+W P +++ ++
Sbjct: 5 ACGGRLTDDYGTIFTYKGPK-----TECVWTLQVDPKYKLLVSIPTLNLTCGKEYVEVLE 59
Query: 123 --------------PTDIISISEGLLVRFRSDDTVVGKGFSASYIAI 155
+ + S G+ V+++ D + ++
Sbjct: 60 GAPGSKSLGKFCEGLSILNRGSSGMTVKYKRDSGHPASPYEIIFLRD 106
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease;
NMR {Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 65.2 bits (159), Expect = 4e-15
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 37 DKDECMTNNGG--------CQHECRNTIGSYICSCHNGYTLLENGHDCK 77
D DEC + + CQH C N +G Y CSC GY L E+ H C+
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding
domain, developmental protein, differentiation,
glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Length = 460
Score = 70.9 bits (173), Expect = 6e-15
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 75 DCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN 122
D C T+PNG I++P P+ YP +C + P I L
Sbjct: 2 DPGSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQ 49
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex (seminal
plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Length = 116
Score = 65.5 bits (160), Expect = 2e-14
Identities = 11/114 (9%), Positives = 25/114 (21%), Gaps = 38/114 (33%)
Query: 80 GCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN----------------- 122
C I +G I + C W P ++++
Sbjct: 8 ECGRVIKDTSGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLNLACGKEYVEVFD 62
Query: 123 ---------------PTDIISISEGLLVRFRSDDTVVGKGFSASYIAIDTQGSK 161
+S + + +++ F + GS+
Sbjct: 63 GLLSGPSYGKLCAGAAIVFLSTANTMTIKYNRISGNSSSPFLIYFYGSS-PGSE 115
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 63.5 bits (155), Expect = 2e-14
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C +NGGC CR CSC +GY L ++ C
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSC 36
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal
fluid protein, CUB domain, X-RAY growth factor; 1.90A
{Bos taurus} SCOP: b.23.1.1
Length = 114
Score = 65.0 bits (159), Expect = 3e-14
Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 37/111 (33%)
Query: 77 KEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN-------------- 122
+ C + +GVI T Y K C+W P + ++++
Sbjct: 6 RNTNCGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLNCNKESLE 60
Query: 123 ------------------PTDIISISEGLLVRFRSDDTVVGKGFSASYIAI 155
D S + V++ + + Y
Sbjct: 61 IIDGLPGSPVLGKICEGSLMDYRSSGSIMTVKYIREPEHPASFYEVLYFQD 111
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Length = 579
Score = 67.3 bits (164), Expect = 1e-13
Identities = 28/121 (23%), Positives = 38/121 (31%), Gaps = 40/121 (33%)
Query: 78 EGGCKYEITAPN-GVIKTPNHPDYYPSKRECIWHFT-TTPGHRIKLN------------- 122
+ C + + + G I +P +P YPS + C W P +I LN
Sbjct: 3 DPPCGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEKHDCK 62
Query: 123 -------------------------PTDIISISEGLLVRFRSDDTVVGKGFSASYIAIDT 157
P IIS L ++F SD G GFS Y T
Sbjct: 63 YDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSMLYIKFTSDYARQGAGFSLRYEIFKT 122
Query: 158 Q 158
Sbjct: 123 G 123
Score = 61.9 bits (150), Expect = 9e-12
Identities = 25/119 (21%), Positives = 37/119 (31%), Gaps = 44/119 (36%)
Query: 78 EGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN--------------- 122
C T+PNG I++P P+ YP +C + P I L
Sbjct: 124 SEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGE 183
Query: 123 -----------------------------PTDIISISEGLLVRFRSDDTVVGKGFSASY 152
P+++ S + L + F +D V GFSA Y
Sbjct: 184 GDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILSLTFHTDMAVAKDGFSARY 242
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted
catalysis, hydrolase; 1.69A {Homo sapiens} SCOP:
g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 61.7 bits (150), Expect = 1e-13
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 36 QDKDECMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDCKE 78
D+ C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 3 DDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 46
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 61.1 bits (149), Expect = 4e-13
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 36 QDKDECMTNNGGC-QHECRNTIGSYICSCHNGYTLLENGHDC 76
+D DEC C C+N G + C C GY C
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSC 42
Score = 52.7 bits (127), Expect = 5e-10
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 36 QDKDECMTNNGGCQHECRNTIGSYICSC--HNGYTLLENGHDCK 77
+D DEC N C C N G Y C C G+ L ++ C+
Sbjct: 43 EDIDECSENM--CAQLCVNYPGGYTCYCDGKKGFKLAQDQKSCE 84
>2w2n_E LDL receptor, low-density lipoprotein receptor;
hydrolase-receptor complex, PCSK9, proprotein converta
low-density lipoprotein receptor, EGF; 2.30A {Homo
sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E
3gcx_E 1hz8_A 1i0u_A 1hj7_A
Length = 107
Score = 61.6 bits (150), Expect = 4e-13
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 36 QDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGH 74
+EC+ NNGGC + C + Y C C +G+ L+
Sbjct: 27 MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRR 65
Score = 58.9 bits (143), Expect = 4e-12
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 36 QDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCK 77
+D DEC + C C N G Y C C G+ L + CK
Sbjct: 67 EDIDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK 107
Score = 32.7 bits (75), Expect = 0.019
Identities = 2/20 (10%), Positives = 4/20 (20%)
Query: 50 HECRNTIGSYICSCHNGYTL 69
H + + Y
Sbjct: 4 HHHHHPMSDYDIPTTENLYF 23
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan
syndrome, connective tissue, extracellular matrix,
structural protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1
Length = 86
Score = 58.5 bits (142), Expect = 4e-12
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 36 QDKDECMTNNGGCQ-HECRNTIGSYICSCHNGYTLLENGHDC 76
D DEC + C+ C NT GSY C C G+ L N C
Sbjct: 44 MDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 85
Score = 52.7 bits (127), Expect = 6e-10
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 37 DKDECMTNNGGC-QHECRNTIGSYICSCHNGYTL-LENGHDC 76
D DEC + C + +C NT G + C C GY +C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC 43
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 59.0 bits (143), Expect = 4e-12
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 37 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 78
C +NGGC H C +G CSC GY L ++ C
Sbjct: 53 SFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHP 94
Score = 35.1 bits (81), Expect = 0.003
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 30 GDSFKSQDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGC 81
GD + + C + IGS+ C C +G+ + C
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNC 57
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 57.4 bits (139), Expect = 5e-12
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 41 CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDCKE 78
C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 40
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 57.1 bits (138), Expect = 8e-12
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 41 CMTNNGGCQHECRNTIG-SYICSCHNGYTLLENGHDC 76
C NG C+ C+N+ +CSC GY L EN C
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 38
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 57.2 bits (139), Expect = 1e-11
Identities = 12/45 (26%), Positives = 17/45 (37%)
Query: 30 GDSFKSQDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGH 74
+ D DEC N C+N IG + C+C G+
Sbjct: 36 LAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPMMT 80
Score = 55.3 bits (134), Expect = 5e-11
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 36 QDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
D DEC + +C NT GSY C C GY L G++C
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNEC 41
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 60.9 bits (147), Expect = 1e-11
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 37 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 78
++ C NNGGC +C+ G+ C+CH GY L E+G C++
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQD 43
Score = 46.3 bits (109), Expect = 1e-06
Identities = 23/111 (20%), Positives = 33/111 (29%), Gaps = 2/111 (1%)
Query: 9 EDKCNNCNESPHDTLTV-FSKIGDSFKSQDKDECMTNNGGCQHECRNTIGSYICSCHNGY 67
KC + T + D QD +EC G C C N+ G++ C C GY
Sbjct: 14 AQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNEC-AEEGYCSQGCTNSEGAFQCWCEAGY 72
Query: 68 TLLENGHDCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHR 118
L + CK G + + N + P
Sbjct: 73 ELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDF 123
Score = 44.0 bits (103), Expect = 9e-06
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 33 FKSQDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 78
+ K+ C NNGGC H C + +Y C+C G+ N H C +
Sbjct: 342 RQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFR-KINSHACAQ 386
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 58.9 bits (143), Expect = 1e-11
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 26 FSKIGDSFKSQDKDECMTNNGGCQ-HECRNTIGSYICSCHNGYTLLENGHDC 76
F + +D DEC G CQ +C NT GS+ C C GY L E+ C
Sbjct: 110 FRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 58.5 bits (142), Expect = 2e-11
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 37 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
D +EC+ C NT GSYIC C + L C
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGC 41
Score = 52.4 bits (126), Expect = 4e-09
Identities = 2/44 (4%), Positives = 7/44 (15%)
Query: 34 KSQDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCK 77
+ + +C G+ +
Sbjct: 77 CCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILE 120
Score = 47.7 bits (114), Expect = 2e-07
Identities = 10/56 (17%), Positives = 12/56 (21%), Gaps = 3/56 (5%)
Query: 26 FSKIGDSFKSQDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGC 81
F D N R G CS G + + C G
Sbjct: 32 FELNPTRVGCVDTRSG---NCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKA 84
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 58.1 bits (141), Expect = 2e-11
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 36 QDKDECMTNNGGCQH-ECRNTIGSYICSCHNGYTLLENGHDC 76
+D DEC G C++ C NT GS+ C C +G TL G C
Sbjct: 105 EDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 53.5 bits (129), Expect = 9e-10
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 35 SQDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
S D DEC ++ C+N+ GS+IC C + TL C
Sbjct: 1 SADIDEC-ESSPCINGVCKNSPGSFICECSSESTLDPTKTIC 41
Score = 42.3 bits (100), Expect = 1e-05
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 12 CNNCNESP-HDTLTVFSKIGDSFKSQDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLL 70
C + T+ + + K +C ++ G T+ C GY+
Sbjct: 41 CIETIKGTCWQTVIDGRCEININGATLKSQC-CSSLGAAWGSPCTLCQVDPICGKGYS-R 98
Query: 71 ENGHDC 76
G C
Sbjct: 99 IKGTQC 104
Score = 25.8 bits (57), Expect = 6.1
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 48 CQHECRNTIGSYICSCHNGYTLLENGHDCKEGGC 81
+ C T+ C + L++ G
Sbjct: 45 IKGTCWQTVIDGRCEININGATLKSQCCSSLGAA 78
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 53.9 bits (130), Expect = 4e-10
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 36 QDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLL-ENGHDC 76
D DEC N G C C N G++ C C L + G DC
Sbjct: 78 TDIDEC-ENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118
Score = 47.7 bits (114), Expect = 9e-08
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 36 QDKDECMTNNGGCQHECRN-TIGSYICSCHNGYTLLENGHDC 76
+ D C C+++C+ SY+C C G+ + +
Sbjct: 2 EPVDPC--FRANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHR 41
Score = 43.9 bits (104), Expect = 2e-06
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 36 QDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
+ + N C +C C C GY L++G C
Sbjct: 39 PHRCQMFCNQTACPADCDPN-TQASCECPEGYI-LDDGFIC 77
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 54.0 bits (130), Expect = 7e-10
Identities = 18/107 (16%), Positives = 27/107 (25%), Gaps = 42/107 (39%)
Query: 88 PNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN------------------------- 122
G I +PN+P YPS+ E W G+ I L
Sbjct: 4 MYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTE 63
Query: 123 -----------------PTDIISISEGLLVRFRSDDTVVGKGFSASY 152
+ L V F+SD + + +
Sbjct: 64 EGRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSDFSNEERFTGFAA 110
Score = 48.7 bits (116), Expect = 7e-08
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 32 SFKSQDKDECM-TNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCK 77
+ + D +EC + C H C N IG Y CSC Y L ++ +C
Sbjct: 111 YYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCG 157
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 53.8 bits (129), Expect = 1e-09
Identities = 24/125 (19%), Positives = 35/125 (28%), Gaps = 45/125 (36%)
Query: 80 GCKYEITAP-NGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLN---------------- 122
+ P G + +P P Y + +E W T PG+R++L
Sbjct: 2 PLGPKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDF 61
Query: 123 --------------------------PTDIISISEGLLVRFRSDDTVV--GKGFSASYIA 154
S+ L + FRSD + GF A Y A
Sbjct: 62 VKLSSGAKVLATLCGQESTDTERAPGKDTFYSLGSSLDITFRSDYSNEKPFTGFEAFYAA 121
Query: 155 IDTQG 159
D
Sbjct: 122 EDIDE 126
Score = 48.4 bits (115), Expect = 1e-07
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 32 SFKSQDKDECMTNNG---GCQHECRNTIGSYICSCHNGYTLLENGHDCKE 78
+ ++D DEC G C H C N +G + CSC GY L N C E
Sbjct: 118 FYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
>3p5b_L Low density lipoprotein receptor variant; B-propellor,
convertase, hydrolase-lipid binding P complex; 3.30A
{Homo sapiens} PDB: 3p5c_L
Length = 400
Score = 52.5 bits (125), Expect = 1e-08
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGH 74
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR 36
Score = 48.3 bits (114), Expect = 4e-07
Identities = 20/109 (18%), Positives = 29/109 (26%), Gaps = 1/109 (0%)
Query: 9 EDKCNNCNESPHDTLTVFSKIGDSFKSQDKDECMTNNGGCQHECRNTIGSYICSCHNGYT 68
CN+ ++ + +D DEC + C C N G Y C C G+
Sbjct: 11 SHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQ 69
Query: 69 LLENGHDCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGH 117
L + CK G + N D
Sbjct: 70 LDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 118
Score = 39.1 bits (90), Expect = 4e-04
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 40 ECMTNNGGCQHECRNT------IGSYICSCHNGYTLLENGHDC 76
+NGGCQ+ C + C+C +G L + C
Sbjct: 354 RTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 50.1 bits (120), Expect = 7e-08
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 38 KDECMT-NNGGCQHECRNTIGSYICSCHNGYTLLENGHDCK 77
K+EC GCQH C SY CSC GY L E+ C
Sbjct: 2 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCV 42
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 47.7 bits (114), Expect = 1e-07
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 78
C +NG C C S +CSC GYTL +NG C
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP 121
Score = 34.2 bits (79), Expect = 0.008
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 36 QDKDECMTNNGGCQHE--CRNTIGSYICSCHNGYT 68
+D D+C T+ CQ++ C++ +G Y C+C G+
Sbjct: 40 KDGDQCETSP--CQNQGKCKDGLGEYTCTCLEGFE 72
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 48.6 bits (116), Expect = 1e-07
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 78
C +NG C C S +CSC GYTL +NG C
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP 121
Score = 37.8 bits (88), Expect = 7e-04
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 36 QDKDECMTNNGGCQHECRNTIGSYICSCHNGYT 68
+D D+C T+ Q +C++ +G Y C+C G+
Sbjct: 40 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE 72
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 47.9 bits (114), Expect = 1e-07
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 30 GDSFKSQDKDECMTNNGGCQH--ECRNTIGSYICSCHNGYTLLENGHDC 76
QD DEC + C C NT+GSY C C G+ +
Sbjct: 88 ESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNN 136
Score = 45.6 bits (108), Expect = 7e-07
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 36 QDKDECMTNNGGC---QHECRNTIGSYICSCHNGYTLLENGHDCKEG 79
D +EC T + +C NT GSY C C GY + K
Sbjct: 42 DDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNE 88
Score = 31.3 bits (71), Expect = 0.087
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 44 NNGGCQHECR---NTIGSYICSCHNGYTLLENGHDCKEGGC 81
++ GC C + + + C C+ G++ C
Sbjct: 1 DSRGCARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETC 41
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 46.9 bits (112), Expect = 2e-07
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 36 QDKDECMTN---NGGCQHECRNTIGS-YICSCHNGYTLLENGHDCKE 78
KD+ + NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 83 THKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 129
Score = 35.4 bits (82), Expect = 0.003
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 36 QDKDECMTNNGGCQHECRNTIGSYICSCHNGYT 68
D D+C ++ C++ + SYIC C +
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFE 77
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 47.6 bits (112), Expect = 5e-07
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTPNHP 98
+EC G C C N+ G++ C C GY L + CK G + + N + P
Sbjct: 2 NEC-AEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 60
Query: 99 DYY 101
Sbjct: 61 HRS 63
Score = 39.5 bits (91), Expect = 3e-04
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 78
C NNGGC H C + +Y C+C G+ + N H C
Sbjct: 307 CGDNNGGCTHLCLPSGQNYTCACPTGFRKI-NSHACAL 343
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 46.7 bits (110), Expect = 1e-06
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 41 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C NGGC H C C+C G+ L+ + C
Sbjct: 581 CAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTC 616
Score = 26.7 bits (58), Expect = 5.3
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 36 QDKDECMTNNGGCQHEC--RNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIK 93
+ C +NGGC H C Y C+C G LLENG CK+G + + A ++
Sbjct: 270 NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLR 329
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 44.3 bits (105), Expect = 7e-06
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 35 SQDKDECMTN-NGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGC 81
K+EC GCQH C SY CSC GY L E+ C
Sbjct: 40 ELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQ 87
Score = 32.8 bits (75), Expect = 0.050
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 37 DKDECMTN---NGGCQHECRNTIGSYICSCHNGY 67
C++ + G C+++I Y C+C GY
Sbjct: 4 GGSPCISQPCLHNG---SCQDSIWGYTCTCSPGY 34
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 42.3 bits (100), Expect = 1e-05
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 36 QDKDECMTNNGGCQHECRNT-IGSYICSCHNGYTLLENGHDCKE 78
D NG C+ C+ +CSC GY L + CK
Sbjct: 84 LDATCN-IKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKP 126
Score = 35.0 bits (81), Expect = 0.005
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 36 QDKDECMTNNGGCQHECRNTIGSYICSCHNGYT 68
D D+C N C++ I SY C C G+
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFE 78
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 40.8 bits (95), Expect = 1e-04
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 41 CMTNNGGCQHEC--RNTIGSYICSCHNGYTLLENGHDCKEG 79
C +NGGC H C Y C+C G LLENG CK+G
Sbjct: 270 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG 310
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 38.7 bits (91), Expect = 2e-04
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 35 SQDKDECMTNNGGCQHE--CRNTIGSYICSCHNGYTLLENGHDC 76
+QD DEC C+H C NT+GS+ C C GYT G C
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRC 41
Score = 32.6 bits (75), Expect = 0.031
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 10/44 (22%)
Query: 36 QDKDECMTN---NGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
+ DEC ++ + G C + I + C C G+T GH C
Sbjct: 81 VNTDECASSPCLHNG---RCLDKINEFQCECPTGFT----GHLC 117
Score = 31.8 bits (73), Expect = 0.057
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 36 QDKDECMTNNGGCQHE--CRNTIGSYICSCHNGYTLLENGHDC 76
D +EC++N CQ++ C + IG + C C GY G C
Sbjct: 43 IDVNECVSNP--CQNDATCLDQIGEFQCICMPGYE----GVHC 79
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 40.1 bits (93), Expect = 2e-04
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 36 QDKDECMTNNGGC--QHECRNTIGSYICSCHNGYTLLENGHDCKE 78
+ C N C ECR+ + C C YT NG C
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYT--GNGRQCVA 45
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 39.7 bits (92), Expect = 3e-04
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 39 DECMTNNGGCQHECRNT------IGSYICSCHNGYTLLENGHDC 76
+ +NGGCQ+ C + C+C +G L + C
Sbjct: 271 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 39.8 bits (92), Expect = 3e-04
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 3 RLDPRIEDKCNNCNESPHDTLTVFSKIGDSFKSQDKDECMTNNGGCQHECRNT-IGSYIC 61
++D + + + + + + C +NGGC H C G+ C
Sbjct: 544 KIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRC 603
Query: 62 SCHNGYTLLENGHDCKE 78
SC LL++ C
Sbjct: 604 SCPMHLVLLQDELSCGG 620
Score = 38.2 bits (88), Expect = 0.001
Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 28/152 (18%)
Query: 31 DSFKSQDKDECMTNNGGCQHEC-RNTIGSYICSCHNGYTLLENGHDCKEGGC-------- 81
S + +EC ++NG C H C +G ++C C Y+L + C
Sbjct: 258 HSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKS 317
Query: 82 -----------KYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPG-HRIKLNPTDIISI 129
+I P ++ DY P ++ W + + + + + ++
Sbjct: 318 AINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTV 377
Query: 130 SEGLLVRFRSDDTVVGKGFSASYIAIDTQGSK 161
S ++ID
Sbjct: 378 -------VVSSVPSQNLEIQPYDLSIDIYSRY 402
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 37.7 bits (86), Expect = 8e-04
Identities = 10/40 (25%), Positives = 13/40 (32%)
Query: 37 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
+ C C N G Y C C G+T + C
Sbjct: 138 GETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVC 177
Score = 33.9 bits (76), Expect = 0.018
Identities = 9/62 (14%), Positives = 18/62 (29%)
Query: 40 ECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTPNHPD 99
C ++ + Y C C GYTL E+ + +++ +
Sbjct: 55 ACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQ 114
Query: 100 YY 101
Sbjct: 115 SA 116
Score = 30.0 bits (66), Expect = 0.29
Identities = 5/45 (11%), Positives = 11/45 (24%)
Query: 37 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGC 81
+ + + + C C+ G L + C
Sbjct: 3 EASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNEC 47
Score = 28.5 bits (62), Expect = 0.92
Identities = 9/40 (22%), Positives = 12/40 (30%)
Query: 35 SQDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGH 74
+ +G C E + I S CSC G
Sbjct: 92 DVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDE 131
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 36.4 bits (83), Expect = 0.004
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 39 DECMTNNGGCQHEC------RNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVI 92
+ +NGGCQ+ C + C+C +G L + C T +
Sbjct: 665 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVATQETSTV 724
Query: 93 KTPNHPDYYPSK 104
+ ++
Sbjct: 725 RLKVSSTAVRTQ 736
Score = 32.9 bits (74), Expect = 0.055
Identities = 17/80 (21%), Positives = 27/80 (33%)
Query: 39 DECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTPNHP 98
+EC+ NNGGC H C + Y C C +G+ L+ C+ T +
Sbjct: 313 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 372
Query: 99 DYYPSKRECIWHFTTTPGHR 118
+ + T
Sbjct: 373 KCQCEEGFQLDPHTKACKAV 392
Score = 31.7 bits (71), Expect = 0.12
Identities = 20/102 (19%), Positives = 29/102 (28%), Gaps = 1/102 (0%)
Query: 9 EDKCNNCNESPHDTLTVFSKIGDSFKSQDKDECMTNNGGCQHECRNTIGSYICSCHNGYT 68
CN+ ++ + +D DEC + C C N G Y C C G+
Sbjct: 323 SHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQ 381
Query: 69 LLENGHDCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWH 110
L + CK G + N D
Sbjct: 382 LDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNL 423
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 36.3 bits (83), Expect = 0.004
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 39 DECMTNNGGCQHEC------RNTIGSYICSCHNGYTLLENGHDCKEG 79
+ +NGGCQ+ C + C+C +G L + C
Sbjct: 647 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 693
Score = 31.7 bits (71), Expect = 0.12
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
Query: 38 KDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENG--HDCKEGGCKYEITAPNGVIKTP 95
+EC+ NNGGC H C + Y C C +G+ L+ D E + ++
Sbjct: 294 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG 353
Query: 96 NHPDYYPSKRECIWHFTTTPGHR 118
+
Sbjct: 354 YKCQCEEGFQLDPHTKACKAVGS 376
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 32.5 bits (75), Expect = 0.005
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 10/43 (23%)
Query: 37 DKDECMTN---NGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
D D+C +N NGG C++ I SY C C G+ G +C
Sbjct: 2 DGDQCESNPCLNGG---SCKDDINSYECWCPFGFE----GKNC 37
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens}
PDB: 2rhp_A*
Length = 634
Score = 34.2 bits (78), Expect = 0.019
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 6/45 (13%)
Query: 30 GDSFKSQDKDECMTNNGGCQ-----HECRNTIGSYIC-SCHNGYT 68
G+ +D DEC C C NT + C C Y
Sbjct: 36 GNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYR 80
Score = 26.5 bits (58), Expect = 6.6
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 6/39 (15%)
Query: 36 QDKDECMTNNGGCQ------HECRNTIGSYICSCHNGYT 68
+ ++ C C + + Y C C GY
Sbjct: 100 EPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYA 138
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 32.0 bits (73), Expect = 0.061
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 38 KDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 78
C + EC TI +Y C C G++ G C++
Sbjct: 119 TAACTNTSCSGHGECVETINNYTCKCDPGFS----GLKCEQ 155
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 30.8 bits (70), Expect = 0.12
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 10/45 (22%)
Query: 35 SQDKDECMTN---NGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
+ +EC NGG C + + +Y C C + G +C
Sbjct: 94 QHNINECEVEPCKNGG---ICTDLVANYSCECPGEFM----GRNC 131
Score = 26.6 bits (59), Expect = 3.1
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 12/43 (27%)
Query: 39 DECMTN---NGGCQHECRNTI--GSYICSCHNGYTLLENGHDC 76
D C N NGG C + GS+ C C +G+T +C
Sbjct: 1 DICDPNPCENGG---ICLPGLADGSFSCECPDGFT----DPNC 36
Score = 26.6 bits (59), Expect = 3.9
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 11/54 (20%)
Query: 30 GDSFKSQDKDECMTN---NGG-CQHE---CRNTIGSYICSCHNGYTLLENGHDC 76
D + C N NGG C+ +T Y+C C G+ G C
Sbjct: 44 SDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFN----GIHC 93
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 29.0 bits (65), Expect = 0.67
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 38 KDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
C + Q EC TIG+Y CSC+ G+ G +C
Sbjct: 119 TASCQDMSCSKQGECLETIGNYTCSCYPGFY----GPEC 153
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 28.1 bits (63), Expect = 1.2
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 35 SQDKDECMTNNGGCQH--ECRNT-IGSYICSCHNGYTLLENGHDC 76
+D + C T+ C + C NT Y CSC GY+ G +C
Sbjct: 128 DKDLNYCGTHQP-CLNGGTCSNTGPDKYQCSCPEGYS----GPNC 167
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 28.7 bits (64), Expect = 1.2
Identities = 6/70 (8%), Positives = 15/70 (21%), Gaps = 7/70 (10%)
Query: 12 CNNCNESPHDTLTVFSKIGDSFKSQDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLE 71
+ +V QD + + + + + N
Sbjct: 89 NVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIV---MNSEGNTILKTPQNAIF--- 142
Query: 72 NGHDCKEGGC 81
C++ C
Sbjct: 143 -FKTCQQAEC 151
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics,
montreal-kingston BA structural genomics initiative,
BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Length = 246
Score = 27.2 bits (60), Expect = 2.9
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
Query: 112 TTTPGHRIKLNPTDIISISEGLLVRFRSDDTVVGKGFSASYIAIDTQGSKEFSEIDDDDE 171
T G +++L+P + I + GL F ++ GF + E S ++DDD
Sbjct: 167 KHTAGSQLRLSPGESICLPPGLYHSFWAE-----AGFGDVLVG-------EVSSVNDDDH 214
Query: 172 D 172
D
Sbjct: 215 D 215
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand,
laminin G- like domain; 2.2A {Homo sapiens} SCOP:
b.29.1.4 b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 27.1 bits (59), Expect = 4.3
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 61 CSCHNGYTLLENGHDCKEGGCKY 83
C G L ++ C++
Sbjct: 6 CDGRGGLKLSQDMDTCEDILPCV 28
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 25.8 bits (56), Expect = 4.4
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 26 FSKIGDSFKSQDKDECMTNNGGC--QHECRNTI-GSYICSCHNGYT 68
F + C NGGC + EC+ +C C +
Sbjct: 34 FKEDAGKCVPAPNMTCKDKNGGCAPEAECKMNDKNEIVCKCTKEGS 79
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 26.3 bits (58), Expect = 4.7
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 38 KDECMTNNGGCQHECRNTIGSYICSCHNGY 67
C + EC I +Y C+C GY
Sbjct: 119 TASCQPWSCSGHGECVEIINNYTCNCDVGY 148
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 25.5 bits (56), Expect = 4.9
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 8/39 (20%)
Query: 35 SQDKDECMTN---NGGCQHECRNTI--GSYICSCHNGYT 68
S C NGG C+ + ++C C G+
Sbjct: 45 SVPVKSCSEPRCFNGG---TCQQALYFSDFVCQCPEGFA 80
>2joi_A Hypothetical protein TA0095; structural genomics, COG4004
orthologous group, structural genomics consortium, SGC,
unknown function; NMR {Thermoplasma acidophilum}
Length = 118
Score = 26.1 bits (57), Expect = 4.9
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 94 TPNHPDYYPSKRECIW---HFTTTPGHR-IKLNPTDIISISEGLLVRFRSDDTVVGKGFS 149
T +H ++ S RE ++ H P + + I L +S+ ++
Sbjct: 3 TSHHHHHHSSGRENLYFQGHMREYPVKKGFPTDYDSIKRKISELGFDVKSEGDLIIASIP 62
Query: 150 A-SYIAIDTQGSKEFSEIDDDDEDEDNTDLNSRRGNYL 186
S I I K D D D D + +++
Sbjct: 63 GISRIEIKPDKRKILVNTGDYDSDADKLAVVRTYNDFI 100
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 24.4 bits (53), Expect = 5.9
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 44 NNGGCQHECRNTIGSYICSCHNGYT 68
N G C H ++ SY C+C GY+
Sbjct: 16 NGGVCMH--IESLDSYTCNCVIGYS 38
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 26.3 bits (58), Expect = 6.3
Identities = 4/40 (10%), Positives = 10/40 (25%), Gaps = 3/40 (7%)
Query: 37 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
+ ++ S CH+ + + D
Sbjct: 265 PSTRIKKSKALSGFSLQSCRHSIPVFCHSSF---YHDTDF 301
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 26.2 bits (57), Expect = 7.3
Identities = 18/82 (21%), Positives = 22/82 (26%), Gaps = 7/82 (8%)
Query: 12 CNNCNESPHDTLTVFSKIGDSFKSQDKDECMTNNGG-CQHECRNTIGSYICSCHNGYTLL 70
C C H + I + D C NG C R C CH G+
Sbjct: 492 CGQC--LCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFE-- 547
Query: 71 ENGHDCKEGGCKYEITAPNGVI 92
G C+ P V
Sbjct: 548 --GSACQCERTTEGCLNPRRVE 567
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 26.2 bits (57), Expect = 7.5
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 43 TNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 76
+ GC+ Y CSC G+ G C
Sbjct: 247 SGQEGCKSYVFCLPDPYGCSCATGWK----GLQC 276
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion,
cytoplasmic vesicl lectin, virulence, EGF-like domain,
membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Length = 61
Score = 24.4 bits (52), Expect = 8.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 52 CRNTIGSYICSCHNGYTLLENG 73
C+ T YIC C+ GY + +G
Sbjct: 27 CKETNSGYICRCNQGYRISLDG 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.136 0.427
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,894,020
Number of extensions: 166063
Number of successful extensions: 622
Number of sequences better than 10.0: 1
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 239
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.7 bits)