BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2976
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EDI|A Chain A, Crystal Structure Of Tolloid-Like Protease 1 (Tll-1)
Protease Domain
Length = 201
Score = 202 bits (515), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 94/123 (76%), Positives = 104/123 (84%), Gaps = 2/123 (1%)
Query: 61 AATARKERIWDYGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILF 120
AAT+R ERIW GVIPY I NF G +A+FKQAMRHWE TCV F+ERS E +YI+F
Sbjct: 1 AATSRTERIWPGGVIPYVIGGNFTGSQRAMFKQAMRHWEKHTCVTFIERSDEE--SYIVF 58
Query: 121 TEKPCGCCSFVGKRGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDNHVQIIR 180
T +PCGCCS+VG+RGNG QAISIGKNCDKFGIVVHELGHV+GFWHEHTRPDRDNHV IIR
Sbjct: 59 TYRPCGCCSYVGRRGNGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRDNHVTIIR 118
Query: 181 ENI 183
ENI
Sbjct: 119 ENI 121
>pdb|3EDG|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain
Length = 202
Score = 193 bits (490), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 102/123 (82%), Gaps = 2/123 (1%)
Query: 61 AATARKERIWDYGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILF 120
AAT+R ER+W GVIP+ I NF G +A+F+QAMRHWE TCV F+ER T+ +YI+F
Sbjct: 2 AATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLER--TDEDSYIVF 59
Query: 121 TEKPCGCCSFVGKRGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDNHVQIIR 180
T +PCGCCS+VG+RG G QAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRD HV I+R
Sbjct: 60 TYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVR 119
Query: 181 ENI 183
ENI
Sbjct: 120 ENI 122
>pdb|3EDH|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain In Complex With Partially Bound Dmso
Length = 201
Score = 193 bits (490), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 102/123 (82%), Gaps = 2/123 (1%)
Query: 61 AATARKERIWDYGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILF 120
AAT+R ER+W GVIP+ I NF G +A+F+QAMRHWE TCV F+ER T+ +YI+F
Sbjct: 1 AATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLER--TDEDSYIVF 58
Query: 121 TEKPCGCCSFVGKRGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDNHVQIIR 180
T +PCGCCS+VG+RG G QAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRD HV I+R
Sbjct: 59 TYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVR 118
Query: 181 ENI 183
ENI
Sbjct: 119 ENI 121
>pdb|1AST|A Chain A, Structure Of Astacin And Implications For Activation Of
Astacins And Zinc-Ligation Of Collagenases
pdb|1IAA|A Chain A, Crystal Structures, Spectroscopic Features, And Catalytic
Properties Of Cobalt(Ii), Copper(Ii), Nickel(Ii), And
Mercury(Ii) Derivatives Of The Zinc Endopeptidase
Astacin. A Correlation Of Structure And Proteolytic
Activity
pdb|1IAB|A Chain A, Crystal Structures, Spectroscopic Features, And Catalytic
Properties Of Cobalt(Ii), Copper(Ii), Nickel(Ii), And
Mercury(Ii) Derivatives Of The Zinc Endopeptidase
Astacin. A Correlation Of Structure And Proteolytic
Activity
pdb|1IAC|A Chain A, Refined 1.8 Angstroms X-Ray Crystal Structure Of Astacin,
A Zinc-Endopeptidase From The Crayfish Astacus Astacus
L. Structure Determination, Refinement, Molecular
Structure And Comparison With Thermolysin
pdb|1IAD|A Chain A, Refined 1.8 Angstroms X-Ray Crystal Structure Of Astacin,
A Zinc-Endopeptidase From The Crayfish Astacus Astacus
L. Structure Determination, Refinement, Molecular
Structure And Comparison To Thermolysin
pdb|1IAE|A Chain A, Crystal Structures, Spectroscopic Features, And Catalytic
Properties Of Cobalt(Ii), Copper(Ii), Nickel(Ii), And
Mercury(Ii) Derivatives Of The Zinc Endopeptidase
Astacin. A Correlation Of Structure And Proteolytic
Activity
pdb|1QJI|A Chain A, Structure Of Astacin With A Transition-State Analogue
Inhibitor
pdb|1QJJ|A Chain A, Structure Of Astacin With A Hydroxamic Acid Inhibitor
Length = 200
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 61 AATARKERIWDYGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILF 120
AA E +W GVIPY G A+ M+ E TC++FV R T +Y+
Sbjct: 1 AAILGDEYLWSGGVIPYTFAGVSGADQSAILS-GMQELEEKTCIRFVPR--TTESDYVEI 57
Query: 121 TEKPCGCCSFVGKRGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDNHVQIIR 180
GC S+VG+ QQ C G ++HEL H +GF+HEHTR DRDN+V I
Sbjct: 58 FTSGSGCWSYVGRISGAQQVSLQANGCVYHGTIIHELMHAIGFYHEHTRMDRDNYVTINY 117
Query: 181 ENI 183
+N+
Sbjct: 118 QNV 120
>pdb|3LQ0|A Chain A, Zymogen Structure Of Crayfish Astacin Metallopeptidase
Length = 235
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 61 AATARKERIWDYGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILF 120
AA E +W GVIPY G A+ M+ E TC++FV R T +Y+
Sbjct: 35 AAILGDEYLWSGGVIPYTFAGVSGADQSAILS-GMQELEEKTCIRFVPR--TTESDYVEI 91
Query: 121 TEKPCGCCSFVGKRGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDNHVQIIR 180
GC S+VG+ QQ C G ++H L H +GF+HEHTR DRDN+V I
Sbjct: 92 FTSGSGCWSYVGRISGAQQVSLQANGCVYHGTILHALMHAIGFYHEHTRMDRDNYVTINY 151
Query: 181 ENI 183
+N+
Sbjct: 152 QNV 154
>pdb|4GWM|A Chain A, Crystal Structure Of Human Promeprin Beta
pdb|4GWM|B Chain B, Crystal Structure Of Human Promeprin Beta
Length = 592
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 74 VIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCCSFVGK 133
IPY ++ + K + A + TC+ F + NYI K GC S VG
Sbjct: 52 TIPYVLEDSLEMNAKGVILNAFERYRLKTCIDF--KPWAGETNYISVF-KGSGCWSSVGN 108
Query: 134 RGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDNHVQIIRENIM 184
R G+Q +SIG NCD+ V HE H +GFWHE +R DRD++V+I+ + I+
Sbjct: 109 RRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRIL 159
>pdb|4GWN|A Chain A, Crystal Structure Of Human Mature Meprin Beta
Length = 553
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 74 VIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCCSFVGK 133
IPY ++ + K + A + TC+ F + NYI K GC S VG
Sbjct: 13 TIPYVLEDSLEMNAKGVILNAFERYRLKTCIDF--KPWAGETNYISVF-KGSGCWSSVGN 69
Query: 134 RGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDNHVQIIRENIM 184
R G+Q +SIG NCD+ V HE H +GFWHE +R DRD++V+I+ + I+
Sbjct: 70 RRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRIL 120
>pdb|3LQB|A Chain A, Crystal Structure Of The Hatching Enzyme Zhe1 From The
Zebrafish Danio Rerio
Length = 199
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 75 IPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCCSFVGKR 134
+PY + F K++ A+ + TC++FV RS +Y L E GC S +G+
Sbjct: 22 VPYVVSGEFSINDKSVIANAISIFHAQTCIRFVPRSI--QADY-LSIENKDGCYSAIGRT 78
Query: 135 GNGQQAISIG-KNCDKFGIVVHELGHVVGFWHEHTRPDRDNHVQIIRENI 183
G G+Q +S+ K C GI HEL H +GF+HE +R DRD +V+I NI
Sbjct: 79 G-GKQVVSLNRKGCVYSGIAQHELNHALGFYHEQSRSDRDQYVRINWNNI 127
>pdb|1CXV|A Chain A, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
pdb|1CXV|B Chain B, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
Length = 164
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 23/116 (19%)
Query: 72 YGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKF-----------VERSSTEHPNYILF 120
Y ++ Y D + KA F++A + W + T + F + + EH ++ F
Sbjct: 17 YRIVNYTPDMSHSEVEKA-FRKAFKVWSDVTPLNFTRIYDGTADIMISFGTKEHGDFYPF 75
Query: 121 TEKPCGCCSFVGKRG----------NGQQAISIGKNCDKFGIVVHELGHVVGFWHE 166
+ P G + G + + S K + F + HELGH +G H
Sbjct: 76 -DGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFIVAAHELGHSLGLDHS 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,152,965
Number of Sequences: 62578
Number of extensions: 201240
Number of successful extensions: 578
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 11
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)