RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2976
(184 letters)
>gnl|CDD|239808 cd04281, ZnMc_BMP1_TLD, Zinc-dependent metalloprotease;
BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic
protein 1) and TLD (tolloid)-like metalloproteases play
vital roles in extracellular matrix formation, by
cleaving precursor proteins such as enzymes, structural
proteins, and proteins involved in the mineralization of
the extracellular matrix. The drosophila protein tolloid
and its Xenopus homologue xolloid cleave and inactivate
Sog and chordin, respectively, which are inhibitors of
Dpp (the Drosophila decapentaplegic gene product) and
its homologue BMP4, involved in dorso-ventral
patterning.
Length = 200
Score = 255 bits (654), Expect = 8e-88
Identities = 99/124 (79%), Positives = 107/124 (86%), Gaps = 2/124 (1%)
Query: 61 AATARKERIWDYGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILF 120
AATARKERIW GVIPY ID NF G +A+FKQAMRHWENFTCV FVER T NYI+F
Sbjct: 1 AATARKERIWPGGVIPYVIDGNFTGSQRAMFKQAMRHWENFTCVTFVER--TPEENYIVF 58
Query: 121 TEKPCGCCSFVGKRGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDNHVQIIR 180
T +PCGCCS+VG+RGNG QAISIGKNCDKFGIVVHELGHV+GFWHEHTRPDRD+HV IIR
Sbjct: 59 TYRPCGCCSYVGRRGNGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRDDHVTIIR 118
Query: 181 ENIM 184
ENI
Sbjct: 119 ENIQ 122
>gnl|CDD|201773 pfam01400, Astacin, Astacin (Peptidase family M12A). The members
of this family are enzymes that cleave peptides. These
proteases require zinc for catalysis. Members of this
family contain two conserved disulphide bridges, these
are joined 1-4 and 2-3. Members of this family have an
amino terminal propeptide which is cleaved to give the
active protease domain. All other linked domains are
found to the carboxyl terminus of this domain. This
family includes: Astacin, a digestive enzyme from
Crayfish. Meprin, a multiple domain membrane component
that is constructed from a homologous alpha and beta
chain. Proteins involved in morphogenesis such as human
bone morphogenetic protein 1, and Tolloid from
Drosophila melanogaster.
Length = 191
Score = 197 bits (503), Expect = 6e-65
Identities = 66/117 (56%), Positives = 81/117 (69%), Gaps = 3/117 (2%)
Query: 68 RIWDYGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGC 127
R W G IPY IDS+F G +AL +QAMRHWE TC++FV R T N LF K GC
Sbjct: 1 RKWPNGPIPYVIDSSFTGLARALIRQAMRHWEQKTCIRFVPR--TAGDNNYLFFFKGDGC 58
Query: 128 CSFVGKRGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDNHVQIIRENIM 184
S+VG+ G G Q +S+G CDKFGI+VHELGH +GFWHE +RPDRD++V I +NI
Sbjct: 59 YSYVGRNG-GAQPVSLGNGCDKFGIIVHELGHALGFWHEQSRPDRDDYVSINWQNID 114
>gnl|CDD|239807 cd04280, ZnMc_astacin_like, Zinc-dependent metalloprotease,
astacin_like subfamily or peptidase family M12A, a group
of zinc-dependent proteolytic enzymes with a HExxH
zinc-binding site/active site. Members of this family
may have an amino terminal propeptide, which is cleaved
to yield the active protease domain, which is
consequently always found at the N-terminus in
multi-domain architectures. This family includes:
astacin, a digestive enzyme from Crayfish; meprin, a
multiple domain membrane component that is constructed
from a homologous alpha and beta chain, proteins
involved in (bone) morphogenesis, tolloid from
drosophila, and the sea urchin SPAN protein, which may
also play a role in development.
Length = 180
Score = 162 bits (413), Expect = 2e-51
Identities = 51/112 (45%), Positives = 71/112 (63%), Gaps = 4/112 (3%)
Query: 73 GVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCCSFVG 132
G +PY ID +F ++L +AMR E+ TC++FV R T +YI K GC S+VG
Sbjct: 2 GTVPYVIDGSFDESDRSLILRAMREIESNTCIRFVPR--TTEKDYIRIV-KGSGCWSYVG 58
Query: 133 KRGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDNHVQIIRENIM 184
+ G G+Q +S+G C G +VHEL H +GF+HE +RPDRD++V I ENI
Sbjct: 59 RVG-GRQVVSLGSGCFSLGTIVHELMHALGFYHEQSRPDRDDYVTINWENIQ 109
>gnl|CDD|214576 smart00235, ZnMc, Zinc-dependent metalloprotease. Neutral zinc
metallopeptidases. This alignment represents a subset of
known subfamilies. Highest similarity occurs in the
HExxH zinc-binding site/ active site.
Length = 139
Score = 132 bits (333), Expect = 6e-40
Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 66 KERIWDYGVIPYEIDSN-FGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKP 124
+ W G +PY IDS+ + + +A+ W + TC++FVER+ T YI F
Sbjct: 1 GSKKWPKGTVPYVIDSSSLSPEEREAIAKALAEWSDVTCIRFVERTGT-ADIYISFGSGD 59
Query: 125 CGCC-SFVGKRGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDNHVQIIRENI 183
GC S G R G Q +S+G C G+ HELGH +G +HE +R DRDN++ I NI
Sbjct: 60 SGCTLSHAG-RPGGDQHLSLGNGCINTGVAAHELGHALGLYHEQSRSDRDNYMYINYTNI 118
Query: 184 M 184
Sbjct: 119 D 119
>gnl|CDD|239810 cd04283, ZnMc_hatching_enzyme, Zinc-dependent metalloprotease,
hatching enzyme-like subfamily. Hatching enzymes are
secreted by teleost embryos to digest the egg envelope
or chorion. In some teleosts, the hatching enzyme may be
a system consisting of two evolutionary related
metalloproteases, high choriolytic enzyme and low
choriolytic enzyme (HCE and LCE), which may have
different substrate specificities and cooperatively
digest the chorion.
Length = 182
Score = 108 bits (273), Expect = 2e-30
Identities = 44/110 (40%), Positives = 70/110 (63%), Gaps = 5/110 (4%)
Query: 75 IPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCCSFVGKR 134
+PY I + +A+ ++AM+ +E TCV+FV R++ +Y+ + GC S++G++
Sbjct: 6 VPYVISPQYSENERAVIEKAMQEFETLTCVRFVPRTTER--DYLNIESRS-GCWSYIGRQ 62
Query: 135 GNGQQAISIGKN-CDKFGIVVHELGHVVGFWHEHTRPDRDNHVQIIRENI 183
G G+Q +S+ K C GI+ HEL H +GF+HE TR DRD +V+I ENI
Sbjct: 63 G-GRQTVSLQKQGCMYKGIIQHELLHALGFYHEQTRSDRDKYVRINWENI 111
>gnl|CDD|239809 cd04282, ZnMc_meprin, Zinc-dependent metalloprotease, meprin_like
subfamily. Meprins are membrane-bound or secreted
extracellular proteases, which cleave a variety of
targets, including peptides such as parathyroid hormone,
gastrin, and cholecystokinin, cytokines such as
osteopontin, and proteins such as collagen IV,
fibronectin, casein and gelatin. Meprins may also be
able to release proteins from the cell surface. Closely
related meprin alpha- and beta-subunits form homo- and
hetero-oligomers; these complexes are found on
epithelial cells of the intestine, for example, and are
also expressed in certain cancer cells.
Length = 230
Score = 90.6 bits (225), Expect = 8e-23
Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 74 VIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCCSFVGK 133
IPY +D + K + +A + +CV F + NYI F K GC S VG
Sbjct: 49 PIPYILDDSLDLNAKGVILKAFEMYRLKSCVDF--KPYEGESNYIFF-FKGSGCWSMVGD 105
Query: 134 RGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDNHVQIIRENIM 184
+ GQ +SIG CD V HE H +GF+HE +R DRD++V+I + I+
Sbjct: 106 QQGGQN-LSIGAGCDYKATVEHEFLHALGFYHEQSRSDRDDYVKIWWDQIL 155
>gnl|CDD|238124 cd00203, ZnMc, Zinc-dependent metalloprotease. This super-family of
metalloproteases contains two major branches, the
astacin-like proteases and the
adamalysin/reprolysin-like proteases. Both branches have
wide phylogenetic distribution, and contain
sub-families, which are involved in vertebrate
development and disease.
Length = 167
Score = 84.1 bits (208), Expect = 6e-21
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 19/125 (15%)
Query: 73 GVIPYEID--------SNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFT--- 121
VIPY + N Q ++L AM+ W ++ ++FV I
Sbjct: 1 KVIPYVVVADDRDVEEENLSAQIQSLILIAMQIWRDYLNIRFVLVGVEIDKADIAILVTR 60
Query: 122 ---EKPCGCCSFVGK-RGNGQQAISIGKNC----DKFGIVVHELGHVVGFWHEHTRPDRD 173
+ G +++G+ + + + N + + HELGH +GF+H+H R DRD
Sbjct: 61 QDFDGGTGGWAYLGRVCDSLRGVGVLQDNQSGTKEGAQTIAHELGHALGFYHDHDRKDRD 120
Query: 174 NHVQI 178
++ I
Sbjct: 121 DYPTI 125
>gnl|CDD|239796 cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like
subfamily. This group contains matrix metalloproteinases
(MMPs), serralysins, and the astacin_like family of
proteases.
Length = 165
Score = 75.6 bits (186), Expect = 1e-17
Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 18/126 (14%)
Query: 73 GVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILF-----TEKPCGC 127
I Y ID + + +A A+ W + F ++ P I + G
Sbjct: 2 KPITYYIDDSVPDKLRAAILDAIEAWNKAFAIGFKN-ANDVDPADIRYSVIRWIPYNDGT 60
Query: 128 CSFVGKRGNGQQA-ISIGKNCD-----------KFGIVVHELGHVVGFWHEHTRPDRDNH 175
S+ + + I + + HELGH +G H DRD++
Sbjct: 61 WSYGPSQVDPLTGEILLARVYLYSSFVEYSGARLRNTAEHELGHALGLRHNFAASDRDDN 120
Query: 176 VQIIRE 181
V ++ E
Sbjct: 121 VDLLAE 126
>gnl|CDD|239806 cd04279, ZnMc_MMP_like_1, Zinc-dependent metalloprotease; MMP_like
sub-family 1. A group of bacterial, archaeal, and fungal
metalloproteinase domains similar to matrix
metalloproteinases and astacin.
Length = 156
Score = 44.4 bits (105), Expect = 4e-06
Identities = 25/100 (25%), Positives = 31/100 (31%), Gaps = 20/100 (20%)
Query: 92 KQAMRHWENFTCVKFVE--RSSTEHPNYILFTEKPCGC-CSFVGKR---GNGQQAISIGK 145
KQA WEN +KFV + I F P R
Sbjct: 27 KQAAAEWENVGPLKFVYNPEEDNDADIVIFFDRPPPVGGAGGGLARAGFPLISDGNRKLF 86
Query: 146 N--------------CDKFGIVVHELGHVVGFWHEHTRPD 171
N + I +HELGH +G WH RP+
Sbjct: 87 NRTDINLGPGQPRGAENLQAIALHELGHALGLWHHSDRPE 126
>gnl|CDD|239819 cd04327, ZnMc_MMP_like_3, Zinc-dependent metalloprotease; MMP_like
sub-family 3. A group of bacterial and fungal
metalloproteinase domains similar to matrix
metalloproteinases and astacin.
Length = 198
Score = 35.8 bits (83), Expect = 0.005
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 152 IVVHELGHVVGFWHEHTRPD 171
+V+HE GH +GF HEH P
Sbjct: 95 VVLHEFGHALGFIHEHQSPA 114
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 30.0 bits (67), Expect = 0.64
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 16 TTSHHHRHKHPQHQLNTTIPPSPSTIVVSQTSLPE 50
T+SH HRH+H +P+ Q +
Sbjct: 190 TSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQ 224
>gnl|CDD|214423 MTH00112, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 346
Score = 29.4 bits (67), Expect = 1.1
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 9 TSSSSPDTTSHHH--RHKHPQHQLNTTIPPSPSTIVVSQTSLP 49
T + P+TT+ R K ++ + + +S LP
Sbjct: 301 TITLPPNTTNMMMKWRTKPKKN------TLTATLTTLSTLLLP 337
>gnl|CDD|239804 cd04277, ZnMc_serralysin_like, Zinc-dependent metalloprotease,
serralysin_like subfamily. Serralysins and related
proteases are important virulence factors in pathogenic
bacteria. They may be secreted into the medium via a
mechanism found in gram-negative bacteria, that does not
require n-terminal signal sequences which are cleaved
after the transmembrane translocation. A calcium-binding
domain c-terminal to the metalloprotease domain, which
contains multiple tandem repeats of a nine-residue motif
including the pattern GGxGxD, and which forms a parallel
beta roll may be involved in the translocation mechanism
and/or substrate binding. Serralysin family members may
have a broad spectrum of substrates each, including host
immunoglobulins, complement proteins, cell matrix and
cytoskeletal proteins, as well as antimicrobial
peptides.
Length = 186
Score = 28.5 bits (64), Expect = 1.6
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 18/115 (15%)
Query: 70 WDYGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCC- 128
+ +A + A+ WE+ + FVE S + I F
Sbjct: 18 GYGREEDTTNTAALSAAQQAAARDALEAWEDVADIDFVEVSDNSGAD-IRFGNSSDPDGN 76
Query: 129 ---------SFVGKRGNGQQAISIGKNCDK-------FGIVVHELGHVVGFWHEH 167
S G G + + + + ++HE+GH +G H
Sbjct: 77 TAGYAYYPGSGSGTAYGGDIWFNSSYDTNSDSPGSYGYQTIIHEIGHALGLEHPG 131
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 28.4 bits (63), Expect = 1.8
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 5 ISSNTSSSSPDTTSHHHRHKHPQHQLNTTIPPSPSTIVVSQTSLPEAYTVHHRDTRAATA 64
S+T +P +T + + PQ + N T PPS QT + +T +
Sbjct: 32 TPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETPQSPT 91
Query: 65 RKERIWDYGVIPYEIDSNF 83
K+ +P EI+ F
Sbjct: 92 TKQ-------VPTEINPKF 103
>gnl|CDD|239805 cd04278, ZnMc_MMP, Zinc-dependent metalloprotease, matrix
metalloproteinase (MMP) sub-family. MMPs are responsible
for a great deal of pericellular proteolysis of
extracellular matrix and cell surface molecules, playing
crucial roles in morphogenesis, cell fate specification,
cell migration, tissue repair, tumorigenesis, gain or
loss of tissue-specific functions, and apoptosis. In
many instances, they are anchored to cell membranes via
trans-membrane domains, and their activity is controlled
via TIMPs (tissue inhibitors of metalloproteinases).
Length = 157
Score = 27.2 bits (61), Expect = 4.0
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 22/100 (22%)
Query: 88 KALFKQAMRHWENFTCVKFVERSSTEHPN-YILFTEKPCGC-CSFVGKRG---------- 135
+ +A R W + T + F E +S + + I F G F G G
Sbjct: 24 RRAIARAFRVWSDVTPLTFREVTSGQEADIRISFARGNHGDGYPFDGPGGTLAHAFFPGG 83
Query: 136 -NGQ---------QAISIGKNCDKFGIVVHELGHVVGFWH 165
G S D F + HE+GH +G H
Sbjct: 84 IGGDIHFDDDEQWTLGSDSGGTDLFSVAAHEIGHALGLGH 123
>gnl|CDD|235490 PRK05478, PRK05478, isopropylmalate isomerase large subunit;
Validated.
Length = 466
Score = 27.8 bits (63), Expect = 4.1
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 7/25 (28%)
Query: 145 KNCDKFGIVVHELG-------HVVG 162
KNC +FGI + +LG HVVG
Sbjct: 88 KNCKEFGITLFDLGDPRQGIVHVVG 112
>gnl|CDD|100078 cd05709, S2P-M50, Site-2 protease (S2P) class of zinc
metalloproteases (MEROPS family M50) cleaves
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. Members of this family use
proteolytic activity within the membrane to transfer
information across membranes to integrate gene
expression with physiologic stresses occurring in
another cellular compartment. The domain core structure
appears to contain at least three transmembrane helices
with a catalytic zinc atom coordinated by three
conserved residues contained within the consensus
sequence HExxH, together with a conserved aspartate
residue. The S2P/M50 family of RIP proteases is widely
distributed; in eukaryotic cells, they regulate such
processes as sterol and lipid metabolism, and
endoplasmic reticulum (ER) stress responses. In
sterol-depleted mammalian cells, a two-step proteolytic
process releases the N-terminal domains of sterol
regulatory element-binding proteins (SREBPs) from
membranes of the ER. These domains translocate into the
nucleus, where they activate genes of cholesterol and
fatty acid biosynthesis. It is the second proteolytic
step that is carried out by the SREBP Site-2 protease
(S2P) which is present in this CD superfamily.
Prokaryotic S2P/M50 homologs have been shown to regulate
stress responses, sporulation, cell division, and cell
differentiation. In Escherichia coli, the S2P homolog
RseP is involved in the sigmaE pathway of
extracytoplasmic stress responses, and in Bacillus
subtilis, the S2P homolog SpoIVFB is involved in the
pro-sigmaK pathway of spore formation. Some of the
subfamilies within this hierarchy contain one or two PDZ
domain insertions, with putative regulatory roles, such
as the inhibition of substrate cleavage as seen by the
RseP PDZ domain.
Length = 180
Score = 26.8 bits (60), Expect = 4.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 150 FGIVVHELGH 159
+ VHELGH
Sbjct: 9 ISVTVHELGH 18
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase.
Length = 379
Score = 27.5 bits (61), Expect = 5.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 1 FSDDISSNTSSSSPDTTSHHHRHKHPQ 27
FS I+++ S + HHH HKHP
Sbjct: 25 FSSKIATSYPHSIHHHSHHHHHHKHPD 51
>gnl|CDD|237325 PRK13267, PRK13267, archaemetzincin-like protein; Reviewed.
Length = 179
Score = 26.9 bits (60), Expect = 5.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 153 VVHELGHVVGFWH 165
V HELGH +G H
Sbjct: 129 VTHELGHTLGLEH 141
>gnl|CDD|235007 PRK02134, PRK02134, hypothetical protein; Provisional.
Length = 249
Score = 26.8 bits (60), Expect = 5.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 18 SHHHRHKHPQ 27
SHHH H PQ
Sbjct: 125 SHHHVHMLPQ 134
>gnl|CDD|222241 pfam13583, Reprolysin_4, Metallo-peptidase family M12B
Reprolysin-like. This zinc-binding metallo-peptidase
has the characteristic binding motif HExxGHxxGxxH of
Reprolysin-like peptidases of family M12B.
Length = 195
Score = 27.0 bits (60), Expect = 5.8
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 129 SFVGKRGNGQQAISIGKNCDKFGIVVHELGHVVGFWH----------EHTRPDRDN 174
+++G + + + +F I HE+GH+ G H T PD N
Sbjct: 106 AWLGALCQNAKGGGVARPTKEFDIFAHEIGHLFGAAHDCTSSGETASSATEPDSGN 161
>gnl|CDD|224825 COG1913, COG1913, Predicted Zn-dependent proteases [General
function prediction only].
Length = 181
Score = 26.6 bits (59), Expect = 6.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 153 VVHELGHVVGFWH 165
V+HELGH++G H
Sbjct: 128 VLHELGHLLGLSH 140
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 27.0 bits (59), Expect = 6.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 6 SSNTSSSSPDTTSHHHRHKHPQHQLNTTIPPSPSTIVVSQTSLPEAY 52
SSNT+ SS ++ P + P +PS IV TS P ++
Sbjct: 579 SSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASH 625
>gnl|CDD|218631 pfam05548, Peptidase_M11, Gametolysin peptidase M11. In the
unicellular biflagellated alga, Chlamydomonas
reinhardtii, gametolysin, a zinc-containing
metallo-protease, is responsible for the degradation of
the cell wall. Homologues of gametolysin have also been
reported in the simple multicellular organism, Volvox.
Length = 303
Score = 26.7 bits (59), Expect = 7.5
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 18/65 (27%)
Query: 110 SSTEHPNYILFTEKPC---------GCCSFVGKRGNGQQAISIGKNCDKFGIVVHELGHV 160
SS H Y+L C G +++ G G Q ++ ++ E H
Sbjct: 97 SSFTHYIYVLPPGVRCPWAGLALVPGRQTWLQTSGYGVQ---------RWATIMQEAIHN 147
Query: 161 VGFWH 165
G WH
Sbjct: 148 YGLWH 152
>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this family,
including sll0033 (crtH) of Synechocystis sp. PCC 6803,
catalyze a cis-trans isomerization of carotenes to the
all-trans lycopene, a reaction that can also occur
non-enzymatically in light through photoisomerization
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 493
Score = 26.7 bits (59), Expect = 8.0
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 98 WENFTCVKFVERSSTEHPNYIL--FTEKPCGC 127
W+ F C+ +E S E P Y+ F + P C
Sbjct: 130 WQVFNCLNSMELLSLEEPRYLFRVFFKHPLAC 161
>gnl|CDD|152823 pfam12388, Peptidase_M57, Dual-action HEIGH metallo-peptidase. The
catalytic triad for this family of proteases is HE-H-H,
which in many members is in the sequence motif HEIGH.
Length = 211
Score = 26.4 bits (58), Expect = 8.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 151 GIVVHELGHVVGFWH 165
++ HE+GH +GF H
Sbjct: 135 HVITHEIGHSIGFRH 149
>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1. Mating in
fungi is controlled by the loci that determine the
mating type of an individual, and only individuals with
differing mating types can mate. Basidiomycete fungi
have evolved a unique mating system, termed tetrapolar
or bifactorial incompatibility, in which mating type is
determined by two unlinked loci; compatibility at both
loci is required for mating to occur. The multi-allelic
tetrapolar mating system is considered to be a novel
innovation that could have only evolved once, and is
thus unique to the mushroom fungi. This domain is
C-terminal to the homeodomain transcription factor
region.
Length = 418
Score = 26.7 bits (59), Expect = 9.2
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 3 DDISSNTSSSSPDTTSHHHRHKHPQHQLNTTIPPSPSTIVVSQTSLPEA 51
++TS S D ++ +Q + + S S + +Q + P
Sbjct: 347 FPAWASTSVSPLDFST-------LFNQPSPSPMASQSILAPAQPTSPSP 388
>gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain. Syndecans are transmembrane
heparin sulfate proteoglycans which are implicated in
the binding of extracellular matrix components and
growth factors.
Length = 207
Score = 26.2 bits (58), Expect = 9.2
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 12/85 (14%)
Query: 2 SDDISSNTSSSSP----DTTSHHHRHKHPQHQLNTTIPPSPSTIVVSQ--TSLPEAYTVH 55
S T++SS TT+ P T SPS + T++ T
Sbjct: 74 SATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTTSPSETDTEEATTTVSTE-TPT 132
Query: 56 HRDTRAATARKERIWD-----YGVI 75
+ AAT + + + VI
Sbjct: 133 EGGSSAATDPSKNLLERKEVLAAVI 157
>gnl|CDD|219865 pfam08493, AflR, Aflatoxin regulatory protein. This domain is
found in the aflatoxin regulatory protein (AflR) which
is involved in the regulation of the biosynthesis of
aflatoxin in the fungal genus Aspergillus. It occurs
together with the fungal Zn(2)-Cys(6) binuclear cluster
domain (pfam00172).
Length = 275
Score = 26.4 bits (58), Expect = 9.3
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 10 SSSSPDTTSHHHRHKHPQHQLNTTIPPSPSTIVVSQTSLPEAYTVHH 56
++++ +TTS H Q ++ PP + + TS P H
Sbjct: 15 ANTTANTTSSSHPQPPVQSGPSSIQPPVATPHTPNGTSSPSPKFSHQ 61
>gnl|CDD|100084 cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P),
zinc metalloproteases (MEROPS family M50A), cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. In Escherichia coli, the S2P
homolog RseP is involved in the sigmaE pathway of
extracytoplasmic stress responses. Also included in this
group are such homologs as Bacillus subtilis YluC,
Mycobacterium tuberculosis Rv2869c S2P, and Bordetella
bronchiseptica HurP. Rv2869c S2P appears to have a role
in the regulation of prokaryotic lipid biosynthesis and
membrane composition and YluC of Bacillus has a role in
transducing membrane stress. This group includes
bacterial and eukaryotic S2P/M50s homologs with either
one or two PDZ domains present. PDZ domains are believed
to have a regulatory role. The RseP PDZ domain is
required for the inhibitory reaction that prevents
cleavage of its substrate, RseA.
Length = 182
Score = 26.2 bits (59), Expect = 9.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 152 IVVHELGH 159
I VHELGH
Sbjct: 12 IFVHELGH 19
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.427
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,194,010
Number of extensions: 799729
Number of successful extensions: 863
Number of sequences better than 10.0: 1
Number of HSP's gapped: 843
Number of HSP's successfully gapped: 47
Length of query: 184
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 93
Effective length of database: 6,901,388
Effective search space: 641829084
Effective search space used: 641829084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)