RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2976
(184 letters)
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative
splicing, calcium, chondrogenesis, cleavage on PAIR of
basic residues, cytokine; 1.25A {Homo sapiens} PDB:
3edg_A 3edi_A
Length = 201
Score = 182 bits (463), Expect = 5e-59
Identities = 88/124 (70%), Positives = 102/124 (82%), Gaps = 2/124 (1%)
Query: 61 AATARKERIWDYGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILF 120
AAT+R ER+W GVIP+ I NF G +A+F+QAMRHWE TCV F+ER T+ +YI+F
Sbjct: 1 AATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLER--TDEDSYIVF 58
Query: 121 TEKPCGCCSFVGKRGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDNHVQIIR 180
T +PCGCCS+VG+RG G QAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRD HV I+R
Sbjct: 59 TYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVR 118
Query: 181 ENIM 184
ENI
Sbjct: 119 ENIQ 122
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme,
protease, Z disulfide bond, hydrolase, metal-binding,
metalloprotease,; 1.45A {Astacus astacus} PDB: 1iab_A
1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Length = 235
Score = 169 bits (431), Expect = 1e-53
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 55 HHRDTRAATARKERIWDYGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEH 114
AA E +W GVIPY G ++ M+ E TC++FV R T
Sbjct: 29 QPARVGAAILGDEYLWSGGVIPYTFAG-VSGADQSAILSGMQELEEKTCIRFVPR--TTE 85
Query: 115 PNYILFTEKPCGCCSFVGKRGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDN 174
+Y+ GC S+VG+ QQ C G ++H L H +GF+HEHTR DRDN
Sbjct: 86 SDYVEIFTSGSGCWSYVGRISGAQQVSLQANGCVYHGTILHALMHAIGFYHEHTRMDRDN 145
Query: 175 HVQIIRENIM 184
+V I +N+
Sbjct: 146 YVTINYQNVD 155
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease,
astacin, metal- protease; 1.10A {Danio rerio}
Length = 199
Score = 149 bits (379), Expect = 2e-46
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 69 IWDYGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCC 128
+ +PY + F K++ A+ + TC++FV R + +Y+ GC
Sbjct: 16 ANNIVEVPYVVSGEFSINDKSVIANAISIFHAQTCIRFVPR--SIQADYLSIE-NKDGCY 72
Query: 129 SFVGKRGNGQQAISIGKN-CDKFGIVVHELGHVVGFWHEHTRPDRDNHVQIIRENIM 184
S +G+ G G+Q +S+ + C GI HEL H +GF+HE +R DRD +V+I NI
Sbjct: 73 SAIGRTG-GKQVVSLNRKGCVYSGIAQHELNHALGFYHEQSRSDRDQYVRINWNNIS 128
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo
sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A*
3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A*
3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A*
3kec_A* 2d1n_A* 1fls_A* ...
Length = 168
Score = 39.0 bits (90), Expect = 3e-04
Identities = 28/116 (24%), Positives = 36/116 (31%), Gaps = 21/116 (18%)
Query: 72 YGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCCS-F 130
Y ++ Y D KA FK+A + W + T + F I F K G F
Sbjct: 17 YRIVNYTPDMTHSEVEKA-FKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPF 75
Query: 131 VGKRGNGQQAISIGKNCDK-------------------FGIVVHELGHVVGFWHEH 167
G G A G N F + HE GH +G H
Sbjct: 76 DGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHEFGHSLGLDHSK 131
>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A
{Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB:
1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P
Length = 479
Score = 37.2 bits (85), Expect = 0.002
Identities = 14/113 (12%), Positives = 27/113 (23%), Gaps = 19/113 (16%)
Query: 81 SNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCCSFVGKRG----- 135
F + K +++ W + + F E + + N +
Sbjct: 95 VKFNAEQIEQAKLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYY 154
Query: 136 --------------NGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDN 174
N + G HE+GH +G H +
Sbjct: 155 PGNYQGAGSSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAHPGEYNAGEG 207
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP:
b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A
1om8_A 1omj_A 1h71_P
Length = 463
Score = 36.4 bits (83), Expect = 0.003
Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 16/110 (14%)
Query: 81 SNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYIL----------------FTEKP 124
S F K K ++ W + V F E + + +
Sbjct: 79 SQFSALQKEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFANFSASNGGAAFAYLPNSS 138
Query: 125 CGCCSFVGKRGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDN 174
S+ + Q + G+ + HE+GH +G H +
Sbjct: 139 RKGESWYLINKDYQVNKTPGEGNYGRQTLTHEIGHTLGLSHPGDYNAGNG 188
>1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease;
1.64A {Pseudomonas aeruginosa} SCOP: b.80.7.1 d.92.1.6
PDB: 1jiw_P 1akl_A
Length = 479
Score = 36.1 bits (82), Expect = 0.004
Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 16/110 (14%)
Query: 81 SNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPN----------------YILFTEKP 124
S F Q +A K +++ W + T + FV+ + + ++
Sbjct: 95 SAFSAQQQAQAKLSLQSWSDVTNIHFVDAGQGDQGDLTFGNFSSSVGGAAFAFLPDVPDA 154
Query: 125 CGCCSFVGKRGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDN 174
S+ + ++ + HE+GH +G H +
Sbjct: 155 LKGQSWYLINSSYSANVNPANGNYGRQTLTHEIGHTLGLSHPGDYNAGEG 204
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo
sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A*
2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A*
3shi_A
Length = 168
Score = 34.7 bits (79), Expect = 0.006
Identities = 26/118 (22%), Positives = 35/118 (29%), Gaps = 21/118 (17%)
Query: 72 YGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCCS-F 130
Y + Y D A ++A + W N T + F + S + I F S F
Sbjct: 15 YRIENYTPDLPRADVDHA-IEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPF 73
Query: 131 VGKRGNGQQAISIGKNCDK-------------------FGIVVHELGHVVGFWHEHTR 169
G GN A G + HELGH +G H
Sbjct: 74 DGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHSTDI 131
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen
degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2
d.92.1.11
Length = 255
Score = 35.3 bits (80), Expect = 0.007
Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 24/120 (20%)
Query: 70 WDYGVIPYEIDSNFG----GQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPC 125
W + Y I + + ++A++ WE T + F E I F +
Sbjct: 92 WRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREH 151
Query: 126 GCCS-FVGKRGNGQQAISIGKNCDK-------------------FGIVVHELGHVVGFWH 165
G F G A + G + F + HE+GH +G +H
Sbjct: 152 GDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFH 211
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor
complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Length = 167
Score = 34.7 bits (79), Expect = 0.007
Identities = 21/103 (20%), Positives = 29/103 (28%), Gaps = 21/103 (20%)
Query: 88 KALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGC-CSFVGKRGNGQQAISIGKN 146
F +A + W + T ++F E I F G F GK G A + G
Sbjct: 32 DDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTG 91
Query: 147 CDK--------------------FGIVVHELGHVVGFWHEHTR 169
F + H GH +G H
Sbjct: 92 VGGDSHFDDDELWTLGKGVGYSLFLVAAHAFGHAMGLEHSQDP 134
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease,
inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP:
d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A
1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A*
1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A*
1ciz_A* ...
Length = 173
Score = 34.4 bits (78), Expect = 0.008
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 20/103 (19%)
Query: 88 KALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCCSFVGKRG---------NGQ 138
+ ++A++ WE T + F E I F + G G
Sbjct: 32 DSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPG 91
Query: 139 QAISIGKNCDK-----------FGIVVHELGHVVGFWHEHTRP 170
+ D+ F + HE+GH +G +H
Sbjct: 92 INGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTE 134
>1sat_A Serratia protease; parallel beta helix, parallel beta roll,
hydrolase (serine protease); 1.75A {Serratia marcescens}
SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A
Length = 471
Score = 35.3 bits (80), Expect = 0.009
Identities = 14/110 (12%), Positives = 29/110 (26%), Gaps = 23/110 (20%)
Query: 81 SNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCCSFVG-------- 132
S F + + K +++ W + + F E ++ + N +
Sbjct: 79 SKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQDRPGHYDYGTQAYAFL 138
Query: 133 -----KRGNGQQAISIGKNCDK----------FGIVVHELGHVVGFWHEH 167
+ + N HE+GH +G H
Sbjct: 139 PNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGLSHPG 188
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12,
complex (elastase inhibitor), acetohydroxamic acid,
hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB:
1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A
3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A*
3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Length = 159
Score = 34.0 bits (77), Expect = 0.012
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 20/98 (20%)
Query: 88 KALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCC-SFVGKRGNGQQAISIGKN 146
++A + W N T +KF + ++ ++F G +F GK G A G
Sbjct: 27 DYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHAFGPGSG 86
Query: 147 CDK-------------------FGIVVHELGHVVGFWH 165
F VHE+GH +G H
Sbjct: 87 IGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGH 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.038
Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 23/72 (31%)
Query: 28 HQLNTTIPPSPSTIVVSQTSLPEAY----TVHHRDT---------RAATARKERIWDYGV 74
H L + T +V L + Y + R RA ++ +
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL--VAI 159
Query: 75 IPYEIDSNFGGQ 86
FGGQ
Sbjct: 160 --------FGGQ 163
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase,
hydrolase; 1.00A {Streptomyces caespitosus} SCOP:
d.92.1.1 PDB: 1kuh_A
Length = 132
Score = 32.1 bits (72), Expect = 0.040
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 80 DSNFGGQHKALFKQAMRHW-ENFTCVKFVERSSTEHPNYILFTEKPCGCCSFVGKRGNGQ 138
D + + A + W + V+ + + + E S+ G+G+
Sbjct: 7 DPSNAPSFQQEIANAAQIWNSSVRNVQLRAGGNAD----FSYYEGNDSRGSYAQTDGHGR 62
Query: 139 QAISIGKNC----DKFGIVVHELGHVVGFWHEHTRP 170
I + D + HE GHV+G + P
Sbjct: 63 GYIFLDYQQNQQYDSTRVTAHETGHVLGLPDHYQGP 98
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET:
CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Length = 165
Score = 31.4 bits (70), Expect = 0.094
Identities = 19/103 (18%), Positives = 28/103 (27%), Gaps = 21/103 (20%)
Query: 88 KALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCC-SFVGKRGNGQQAISIGKN 146
+ +A++ W T + F E I F G F G G A +
Sbjct: 31 RQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTH 90
Query: 147 CDK--------------------FGIVVHELGHVVGFWHEHTR 169
+ + HE GHV+G H
Sbjct: 91 REGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTAA 133
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite,
structural proteomics in europe, spine, structural
genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens}
SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Length = 450
Score = 31.4 bits (70), Expect = 0.17
Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 20/101 (19%)
Query: 85 GQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCCS-FVGKRGNGQQAISI 143
++A + W N T + F + S + I F S F G GN A
Sbjct: 109 ADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQP 168
Query: 144 G-------------------KNCDKFGIVVHELGHVVGFWH 165
G + + + HELGH +G H
Sbjct: 169 GPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSH 209
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex
(metalloprotease/inhibitor); HET: BSI; 1.20A {Homo
sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A
1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A*
3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A
1a86_A* 1jh1_A* 1a85_A ...
Length = 163
Score = 30.6 bits (68), Expect = 0.19
Identities = 25/114 (21%), Positives = 36/114 (31%), Gaps = 21/114 (18%)
Query: 72 YGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGC-CSF 130
Y + Y + +A K A W + + F S E I F ++ G F
Sbjct: 16 YRIRNYTPQLSEAEVERA-IKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPF 74
Query: 131 VGKRGNGQQAISIGK-------------------NCDKFGIVVHELGHVVGFWH 165
G G A G+ N + F + HE GH +G H
Sbjct: 75 DGPNGILAHAFQPGQGIGGDAHFDAEETWTNTSANYNLFLVAAHEFGHSLGLAH 128
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics,
structural proteomics in europe, spine, spine-2,
spine2-complexes, hydrolase; HET: NGH; NMR {Homo
sapiens}
Length = 160
Score = 30.1 bits (67), Expect = 0.22
Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 20/98 (20%)
Query: 88 KALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCC-SFVGKRGNGQQAISIGKN 146
+ A++ W + + FV +S E I F G F G RG A + G+
Sbjct: 27 DKAVEMALQAWSSAVPLSFVRINSGEADIMISFENGDHGDSYPFDGPRGTLAHAFAPGEG 86
Query: 147 CDK-------------------FGIVVHELGHVVGFWH 165
F + HE GH +G H
Sbjct: 87 LGGDTHFDNAEKWTMGTNGFNLFTVAAHEFGHALGLAH 124
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo
sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Length = 217
Score = 29.3 bits (66), Expect = 0.58
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 152 IVVHELGHVVGFWHEHTRPDRDNHVQIIRENIM 184
V HE+GH++G H+ ++ + + +M
Sbjct: 144 TVAHEIGHLLGLSHDDSKFCEETFGSTEDKRLM 176
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV
collagenase) (92 kDa gelatinase)...; S1-prime pocket,
hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A
{Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A*
2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Length = 159
Score = 29.1 bits (64), Expect = 0.64
Identities = 25/115 (21%), Positives = 32/115 (27%), Gaps = 22/115 (19%)
Query: 72 YGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCCS-F 130
Y + Y D A F +A W T + F S + I F G F
Sbjct: 14 YWIQNYSEDLPRAVIDDA-FARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPF 72
Query: 131 VGKRGNGQQAISIGKNCDK--------------------FGIVVHELGHVVGFWH 165
GK G A G F + H+ GH +G H
Sbjct: 73 DGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGQGYSLFLVAAHQFGHALGLDH 127
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type -
matrix metalloproteinase, batimastat, hydroxamate
inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo
sapiens} SCOP: d.92.1.11
Length = 169
Score = 28.7 bits (63), Expect = 0.75
Identities = 23/108 (21%), Positives = 32/108 (29%), Gaps = 30/108 (27%)
Query: 88 KALFKQAMRHWENFTCVKFVERSSTEHPN-------YILFTEKPCGCCSFVGKRGNGQQA 140
+ ++A W+N T + F E +E N I+F G S G
Sbjct: 26 RKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEGGFLAH 85
Query: 141 -----------------------ISIGKNCDKFGIVVHELGHVVGFWH 165
D F + VHELGH +G H
Sbjct: 86 AYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEH 133
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A*
1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Length = 174
Score = 28.6 bits (63), Expect = 0.82
Identities = 18/115 (15%), Positives = 26/115 (22%), Gaps = 22/115 (19%)
Query: 72 YGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCCSFV 131
Y ++ Y D + +A+ W + F + I F G
Sbjct: 18 YRIVSYTRDLPHITVDRL-VSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPF 76
Query: 132 GKRGNGQQAISIGKNCDK---------------------FGIVVHELGHVVGFWH 165
GN HELGH +G H
Sbjct: 77 DGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGH 131
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain,
catalytic domain, domain interaction., calcium,
extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Length = 365
Score = 28.4 bits (62), Expect = 1.3
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 20/98 (20%)
Query: 88 KALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCC-SFVGKRGNGQQAIS---- 142
++A + W N T +KF + ++ ++F G +F GK G A
Sbjct: 26 DYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHAFGPGSG 85
Query: 143 ---------------IGKNCDKFGIVVHELGHVVGFWH 165
+ F VHE+GH +G H
Sbjct: 86 IGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGH 123
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor,
metalloprotease, dependent, peptidase; 1.70A {Tannerella
forsythia} PDB: 2xs3_A
Length = 167
Score = 27.4 bits (60), Expect = 1.9
Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 24/102 (23%)
Query: 88 KALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKP-CGCC------------SFVGKR 134
+ + A W + + + F++ + + + EK G +F
Sbjct: 30 ENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNTGILAHAFYPPP 89
Query: 135 GNGQQAISIGKNCDK-----------FGIVVHELGHVVGFWH 165
G A + + D+ + HE+GH++G H
Sbjct: 90 AGGNYAGHLHFDDDENWSINGSGIDLITVAAHEIGHLLGIEH 131
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone,
triacylglycerol hydrolase, all alpha helix protein, A/B
hydrolase fold; 1.85A {Burkholderia glumae} SCOP:
a.137.15.1
Length = 332
Score = 27.8 bits (61), Expect = 2.2
Identities = 13/46 (28%), Positives = 17/46 (36%)
Query: 19 HHHRHKHPQHQLNTTIPPSPSTIVVSQTSLPEAYTVHHRDTRAATA 64
HHH H H +P +PS + A V + AA A
Sbjct: 6 HHHHHHSSGHIEGRHMPAAPSPAPAGAVAGGPAAGVPAAASGAAEA 51
>3ujz_A Metalloprotease STCE; mucin-type glycoprotein, hydrolase; 2.50A
{Escherichia coli}
Length = 869
Score = 27.5 bits (60), Expect = 3.3
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 151 GIVVHELGHVVGFWHEHTRPDRDNH 175
H++GH G H H
Sbjct: 413 NEFSHDVGHNYGLGHYVDGFKGSVH 437
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Length = 202
Score = 26.5 bits (59), Expect = 4.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 152 IVVHELGHVVGFWH 165
++ HELGH +G H
Sbjct: 138 VMAHELGHNLGMLH 151
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS
domain, hydrolase, metal-binding, transmembrane; 3.30A
{Methanocaldococcus jannaschii}
Length = 224
Score = 26.8 bits (59), Expect = 4.1
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 150 FGIVVHELGHVVGFWHEHTRPDR 172
+V+HELGH + ++
Sbjct: 49 VSVVLHELGHSYVAKKYGVKIEK 71
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin;
1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB:
1bsw_A
Length = 197
Score = 26.5 bits (59), Expect = 4.5
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 152 IVVHELGHVVGFWH 165
+ HE+ H +G H
Sbjct: 136 TLAHEMAHNLGVSH 149
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor
complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9
PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Length = 202
Score = 26.5 bits (59), Expect = 4.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 152 IVVHELGHVVGFWH 165
+ HELGH +G H
Sbjct: 139 TMAHELGHNLGMEH 152
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG
MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB:
1r54_A*
Length = 214
Score = 26.6 bits (59), Expect = 5.1
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 152 IVVHELGHVVGFWH 165
+ HE+GH +G H
Sbjct: 139 TMAHEIGHSLGLSH 152
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel,
lyase; 2.95A {Clostridium perfringens}
Length = 560
Score = 26.6 bits (58), Expect = 6.1
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 16/70 (22%)
Query: 19 HHHRHKHPQHQ--------LNTTIPPSPST--------IVVSQTSLPEAYTVHHRDTRAA 62
HHH H H H + IP S T + Q EA +
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKHMKIPCSMMTQHPDNVETYISIQQEPAEAIKGLTPQDKGG 62
Query: 63 TARKERIWDY 72
+E + D+
Sbjct: 63 LGIEEVMIDF 72
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on
PAIR of basic residue disulfide bond, membrane,
metal-binding; 2.05A {Homo sapiens} PDB: 1bqq_M 1buv_M
Length = 181
Score = 26.0 bits (56), Expect = 6.1
Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 31/109 (28%)
Query: 88 KALFKQAMRHWENFTCVKFVE--------RSSTEHPNYILFTEKPCGCC-SFVGKRGNGQ 138
++A R WE+ T ++F E + I F E G F G+ G
Sbjct: 30 YEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLA 89
Query: 139 QAISIGKNCD----------------------KFGIVVHELGHVVGFWH 165
A G N F + VHELGH +G H
Sbjct: 90 HAYFPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEH 138
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex,
metal-binding, zinc-depending, metalloprotease,
metalloproteinase/inhibitor complex; HET: WR2; 1.05A
{Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A
3gbo_A
Length = 202
Score = 26.1 bits (58), Expect = 6.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 152 IVVHELGHVVGFWH 165
+ HELGH +G H
Sbjct: 139 TMAHELGHNLGIHH 152
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase;
1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB:
1kui_A 1kuk_A 1kug_A 1wni_A
Length = 203
Score = 26.1 bits (58), Expect = 6.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 152 IVVHELGHVVGFWH 165
+ HELGH +G H
Sbjct: 141 TMTHELGHNLGMEH 154
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease,
heparin-binding, metalloproteinase, metzincin,
glycoprotein metal-binding; 2.00A {Homo sapiens} PDB:
2jih_A 3q2g_A* 3q2h_A*
Length = 300
Score = 26.3 bits (58), Expect = 6.5
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 152 IVVHELGHVVGFWHEHTRPDRDNHVQIIRENIM 184
HELGHV H+ + + ++M
Sbjct: 146 TTAHELGHVFNMPHDDAKQCASLNGVNQDSHMM 178
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin,
snake venom proteinase; 2.20A {Deinagkistrodon acutus}
SCOP: d.92.1.9
Length = 197
Score = 26.1 bits (58), Expect = 6.8
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 152 IVVHELGHVVGFWH 165
+ HELGH +G H
Sbjct: 138 TMAHELGHNLGMNH 151
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length,
metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2
b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB:
1gxd_A
Length = 631
Score = 26.4 bits (57), Expect = 7.0
Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 1/90 (1%)
Query: 88 KALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPCGCCSFVGKRGNGQQAISIGKNC 147
F +A + W + T ++F E I F G + G A +
Sbjct: 112 DDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKD-GLLAHAFAPGT 170
Query: 148 DKFGIVVHELGHVVGFWHEHTRPDRDNHVQ 177
G + + + +
Sbjct: 171 GVGGDSHFDDDELWTLGEGQVVRVKYGNAD 200
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Length = 298
Score = 26.1 bits (58), Expect = 7.2
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 18 SHHHRHKHPQHQLNTTIPPSPSTIVVSQTSLPEA 51
+HHH H + T P S S L EA
Sbjct: 2 AHHHHHHMGTLEAQTQGPGSMSAADAQDAVLYEA 35
>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania
major} SCOP: d.92.1.3
Length = 478
Score = 26.2 bits (56), Expect = 7.6
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 150 FGIVVHELGHVVGFWHEHTRPDRD 173
+V HE+ H +GF R
Sbjct: 160 TRVVTHEMAHALGFSGPFFEDARI 183
>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi;
1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A
Length = 163
Score = 25.3 bits (55), Expect = 9.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 153 VVHELGHVVGFWH 165
VHE+GHV+G H
Sbjct: 118 AVHEIGHVLGLKH 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.427
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,001,392
Number of extensions: 174161
Number of successful extensions: 620
Number of sequences better than 10.0: 1
Number of HSP's gapped: 598
Number of HSP's successfully gapped: 59
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)