RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2976
(184 letters)
>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish
(Astacus astacus) [TaxId: 6715]}
Length = 200
Score = 132 bits (333), Expect = 6e-40
Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 61 AATARKERIWDYGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILF 120
AA E +W GVIPY G ++ M+ E TC++FV R T +Y+
Sbjct: 1 AAILGDEYLWSGGVIPYTFA-GVSGADQSAILSGMQELEEKTCIRFVPR--TTESDYVEI 57
Query: 121 TEKPCGCCSFVGKRGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDNHVQIIR 180
GC S+VG+ QQ C G ++HEL H +GF+HEHTR DRDN+V I
Sbjct: 58 FTSGSGCWSYVGRISGAQQVSLQANGCVYHGTIIHELMHAIGFYHEHTRMDRDNYVTINY 117
Query: 181 ENIM 184
+N+
Sbjct: 118 QNVD 121
>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens),
fibroblast [TaxId: 9606]}
Length = 168
Score = 51.1 bits (121), Expect = 4e-09
Identities = 23/125 (18%), Positives = 38/125 (30%), Gaps = 24/125 (19%)
Query: 70 WDYGVIPYEIDSNFGG----QHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPC 125
W + Y I + + ++A++ WE T + F E I F +
Sbjct: 10 WRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREH 69
Query: 126 GCC-SFVGKRGNGQQAISIG-------------------KNCDKFGIVVHELGHVVGFWH 165
G F G A + G + F + HE+GH +G +H
Sbjct: 70 GDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFH 129
Query: 166 EHTRP 170
Sbjct: 130 SANTE 134
>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 246
Score = 49.5 bits (117), Expect = 3e-08
Identities = 21/144 (14%), Positives = 40/144 (27%), Gaps = 18/144 (12%)
Query: 53 TVHHRDTRAATARKERIWDYGVIPYEID--SNFGGQHKALFKQAMRHWENFTCVKFVERS 110
T+ + W Y Y + S F Q +A K +++ W + T + FV+
Sbjct: 56 TLSYSFLTKPNDFFNTPWKYVSDIYSLGKFSAFSAQQQAQAKLSLQSWSDVTNIHFVDAG 115
Query: 111 STEHPN-YILFTEKPCGCCSFVGKRGNGQQA---------------ISIGKNCDKFGIVV 154
+ + G +F ++ +
Sbjct: 116 QGDQGDLTFGNFSSSVGGAAFAFLPDVPDALKGQSWYLINSSYSANVNPANGNYGRQTLT 175
Query: 155 HELGHVVGFWHEHTRPDRDNHVQI 178
HE+GH +G H +
Sbjct: 176 HEIGHTLGLSHPGDYNAGEGDPTY 199
>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii
18 [TaxId: 306]}
Length = 242
Score = 45.2 bits (106), Expect = 9e-07
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 16/110 (14%)
Query: 81 SNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYIL---FTEKPCGCCSFVGKRGNG 137
S F K K ++ W + V F E + + + G +F +
Sbjct: 77 SQFSALQKEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFANFSASNGGAAFAYLPNSS 136
Query: 138 QQAISI-------------GKNCDKFGIVVHELGHVVGFWHEHTRPDRDN 174
++ S G+ + HE+GH +G H +
Sbjct: 137 RKGESWYLINKDYQVNKTPGEGNYGRQTLTHEIGHTLGLSHPGDYNAGNG 186
>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 157
Score = 38.3 bits (88), Expect = 1e-04
Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 24/124 (19%)
Query: 70 WDYGVIPYEIDSNFGG----QHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPC 125
W+ + Y I++ ++A + W N T + F + S + I F
Sbjct: 3 WEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDH 62
Query: 126 GCCS-FVGKRGNGQQAISIG-------------------KNCDKFGIVVHELGHVVGFWH 165
S F G GN A G + + + HELGH +G H
Sbjct: 63 RDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSH 122
Query: 166 EHTR 169
Sbjct: 123 STDI 126
>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 162
Score = 37.9 bits (87), Expect = 2e-04
Identities = 25/126 (19%), Positives = 36/126 (28%), Gaps = 27/126 (21%)
Query: 70 WDYGVIPYEIDSNFG-----GQHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKP 124
W+ + Y I F Q + +A++ W T + F E I F
Sbjct: 9 WEKTDLTYRI-LRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYW 67
Query: 125 CG-CCSFVGKRG--------------------NGQQAISIGKNCDKFGIVVHELGHVVGF 163
G F G G + I + D + HE GHV+G
Sbjct: 68 HGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGL 127
Query: 164 WHEHTR 169
H
Sbjct: 128 QHTTAA 133
>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId:
9606]}
Length = 161
Score = 37.2 bits (85), Expect = 3e-04
Identities = 22/123 (17%), Positives = 30/123 (24%), Gaps = 25/123 (20%)
Query: 70 WDYGVIPYEIDSNFGG----QHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPC 125
WD I Y I F +A + W + T ++F E I F
Sbjct: 5 WDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEH 64
Query: 126 GCCSFVGKRGNGQQAIS---------------------IGKNCDKFGIVVHELGHVVGFW 164
G + G F + HE GH +G
Sbjct: 65 GDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWSLGKGVGYSLFLVAAHEFGHAMGLE 124
Query: 165 HEH 167
H
Sbjct: 125 HSQ 127
>d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens
[TaxId: 615]}
Length = 243
Score = 37.5 bits (86), Expect = 4e-04
Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 23/121 (19%)
Query: 81 SNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPN-YILFTEKPCGCC--------SFV 131
S F + + K +++ W + + F E ++ + N + +F+
Sbjct: 76 SKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQDRPGHYDYGTQAYAFL 135
Query: 132 GKRGNGQQAISIGKNCDK--------------FGIVVHELGHVVGFWHEHTRPDRDNHVQ 177
Q + + HE+GH +G H +
Sbjct: 136 PNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGLSHPGDYNAGEGDPT 195
Query: 178 I 178
Sbjct: 196 Y 196
>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 36.4 bits (83), Expect = 7e-04
Identities = 23/123 (18%), Positives = 31/123 (25%), Gaps = 25/123 (20%)
Query: 70 WDYGVIPYEIDSNFGG----QHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPC 125
W V+ Y I S L +A+ W + F + I F
Sbjct: 10 WTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAH 69
Query: 126 GCC-SFVGKRGNGQQAISIG--------------------KNCDKFGIVVHELGHVVGFW 164
G F G A + G + HELGH +G
Sbjct: 70 GDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMG 129
Query: 165 HEH 167
H
Sbjct: 130 HSS 132
>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 158
Score = 35.3 bits (80), Expect = 0.001
Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 24/122 (19%)
Query: 70 WDYGVIPYEIDSNFGG----QHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKPC 125
W I Y I++ ++A + W N T +KF + ++ ++F
Sbjct: 4 WRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAH 63
Query: 126 GCC-SFVGKRGNGQQAISIG-------------------KNCDKFGIVVHELGHVVGFWH 165
G +F GK G A G + F VHE+GH +G H
Sbjct: 64 GDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGH 123
Query: 166 EH 167
Sbjct: 124 SS 125
>d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi
[TaxId: 556]}
Length = 241
Score = 36.0 bits (82), Expect = 0.001
Identities = 14/113 (12%), Positives = 27/113 (23%), Gaps = 19/113 (16%)
Query: 81 SNFGGQHKALFKQAMRHWENFTCVKFVERSSTEHPNYIL-------------------FT 121
F + K +++ W + + F E + + N +
Sbjct: 78 VKFNAEQIEQAKLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYY 137
Query: 122 EKPCGCCSFVGKRGNGQQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDN 174
N + G HE+GH +G H +
Sbjct: 138 PGNYQGAGSSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAHPGEYNAGEG 190
>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 169
Score = 35.2 bits (80), Expect = 0.002
Identities = 25/124 (20%), Positives = 35/124 (28%), Gaps = 24/124 (19%)
Query: 70 WDYGVIPYEIDSNFGG----QHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEK-P 124
W + Y I + + + FK+A + W + T + F I F K
Sbjct: 10 WSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEH 69
Query: 125 CGCCSFVGKRGNGQQAISIGKNCD-------------------KFGIVVHELGHVVGFWH 165
F G G A G N F + HE GH +G H
Sbjct: 70 GDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHEFGHSLGLDH 129
Query: 166 EHTR 169
Sbjct: 130 SKDP 133
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 163
Score = 35.2 bits (80), Expect = 0.002
Identities = 23/124 (18%), Positives = 35/124 (28%), Gaps = 24/124 (19%)
Query: 70 WDYGVIPYEIDSNFGG----QHKALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKP- 124
W+ + Y I + + + K A W + + F S E I F ++
Sbjct: 9 WERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDH 68
Query: 125 CGCCSFVGKRGNGQQAISIGKNCDK-------------------FGIVVHELGHVVGFWH 165
F G G A G+ F + HE GH +G H
Sbjct: 69 GDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTNTSANYNLFLVAAHEFGHSLGLAH 128
Query: 166 EHTR 169
Sbjct: 129 SSDP 132
>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 159
Score = 31.4 bits (70), Expect = 0.032
Identities = 20/105 (19%), Positives = 27/105 (25%), Gaps = 21/105 (20%)
Query: 88 KALFKQAMRHWENFTCVKFVERSSTEHPNYILFTEKP-CGCCSFVGKRGNGQQAISIG-- 144
F +A W T + F S + I F F GK G A G
Sbjct: 29 DDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPG 88
Query: 145 ------------------KNCDKFGIVVHELGHVVGFWHEHTRPD 171
+ F + H+ GH +G H
Sbjct: 89 IQGDAHFDDDELWSLGKGQGYSLFLVAAHQFGHALGLDHSSVPEA 133
>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase
(CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 31.5 bits (70), Expect = 0.037
Identities = 26/133 (19%), Positives = 37/133 (27%), Gaps = 35/133 (26%)
Query: 70 WDYGVIPYEIDSNFGG----QHKALFKQAMRHWENFTCVKFVERSSTEHP---------N 116
W + I + I + ++A R WE+ T ++F E
Sbjct: 6 WQHNEITFCIQNYTPKVGEYATYEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIM 65
Query: 117 YILFTEKPCGCCSFVGKRGNGQQAISIGKNC----------------------DKFGIVV 154
F G+ G A G N D F + V
Sbjct: 66 IFFAEGFHGDSTPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAV 125
Query: 155 HELGHVVGFWHEH 167
HELGH +G H
Sbjct: 126 HELGHALGLEHSS 138
>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 654
Score = 31.3 bits (70), Expect = 0.058
Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 6/95 (6%)
Query: 69 IWDYGVIPYEIDSNFGGQHKALFK--QAMRHWENFTCVKFVERSSTEHPNYILFTEKPCG 126
W V Y G+ F R + F + +
Sbjct: 366 AWHEDVRLYTARDAASGEVVGKFYLDLYPREGKYGHAACFGLQPGCLRQDGSRQIAIAAM 425
Query: 127 CCSFVGKRGNGQQAISIGKNCDKFGIVVHELGHVV 161
+F + + D+ HE GHV+
Sbjct: 426 VANFTKPTADAPSLLQ----HDEVETYFHEFGHVM 456
>d1c7ka_ d.92.1.1 (A:) Zinc protease {Streptomyces caespitosus
[TaxId: 53502]}
Length = 132
Score = 27.5 bits (61), Expect = 0.64
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 88 KALFKQAMRHW-ENFTCVKFVERSSTEHPNYILFTEKPCGCCSFVGKRGNGQQAISIGKN 146
+ A + W + V+ + + + E S+ G+G+ I +
Sbjct: 15 QQEIANAAQIWNSSVRNVQLRAGGNAD----FSYYEGNDSRGSYAQTDGHGRGYIFLDYQ 70
Query: 147 C----DKFGIVVHELGHVVGFWHEHTRP 170
D + HE GHV+G + P
Sbjct: 71 QNQQYDSTRVTAHETGHVLGLPDHYQGP 98
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 25.7 bits (55), Expect = 3.0
Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 30/113 (26%)
Query: 85 GQHKALFKQAMRHWENFTCVKFVERSSTEHPN-------YILFTEKP-CGCCSFVGKRGN 136
+ + ++A W+N T + F E +E N I+F F G+ G
Sbjct: 23 PETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEGGF 82
Query: 137 GQQAIS----------------------IGKNCDKFGIVVHELGHVVGFWHEH 167
A D F + VHELGH +G H +
Sbjct: 83 LAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEHSN 135
>d2d0ob1 c.51.3.2 (B:5-112) Diol dehydratase-reactivating factor
small subunit DdrB {Klebsiella oxytoca [TaxId: 571]}
Length = 108
Score = 23.9 bits (52), Expect = 7.1
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 121 TEKPCGCCSFVGKRGNGQQAISIGKNCDKFGIVVH 155
P G + + +G CD+ +VVH
Sbjct: 35 QHHPAGEVVDSAWQAARSSPLLVGIACDRHMLVVH 69
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 24.7 bits (53), Expect = 8.3
Identities = 6/89 (6%), Positives = 21/89 (23%), Gaps = 1/89 (1%)
Query: 69 IWDYGVIPYEIDSNFGGQHKALFKQAMRHWENFTCVKFVERSSTEH-PNYILFTEKPCGC 127
+ + +A ++ + + E I +
Sbjct: 125 TTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTV 184
Query: 128 CSFVGKRGNGQQAISIGKNCDKFGIVVHE 156
G+ + ++ + +GI +
Sbjct: 185 NLAGGQPVSMANMRAVHEMASTYGIKIFY 213
>d1tvla_ c.1.16.4 (A:) Putative monooxygenase YtnJ {Bacillus
subtilis [TaxId: 1423]}
Length = 430
Score = 24.5 bits (52), Expect = 8.8
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 149 KFGIVVHELGHVVGFW-HEHTRPDRDNHVQIIRE 181
+FG ++H +G W H P +++ +
Sbjct: 6 QFGAMIHGVGGTTDGWRHPDVDPSASTNIEFYMK 39
>d2do8a1 d.310.1.1 (A:1-186) Hypothetical protein HD1794
{Haemophilus ducreyi [TaxId: 730]}
Length = 186
Score = 24.4 bits (52), Expect = 9.1
Identities = 8/94 (8%), Positives = 23/94 (24%), Gaps = 12/94 (12%)
Query: 15 DTTSHHHRHKHPQHQLNTTIPPSPSTIVVSQTSLPEAYTVHHRDTRAATARKERIWDYGV 74
+ H H+ + + + + + +++ + W
Sbjct: 79 NQDRGFIVHSKTDHEFTHSYKVTDDITLTTSGDVLDSFGTQTAPEKFIVCLGCSTWKPHQ 138
Query: 75 IPYEIDSN------------FGGQHKALFKQAMR 96
+ EI N F + + +A
Sbjct: 139 LEQEIAQNYWLLSEANNQTLFETSYLDRWVEANE 172
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.427
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 736,715
Number of extensions: 32581
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 37
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.7 bits)