BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2977
(92 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 74/90 (82%), Positives = 84/90 (93%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
M+DAAD +K+EASRNELH L++KPQL GIP+LVLGNKRDLPNALDEK+LI++MNL AIQD
Sbjct: 97 MIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQD 156
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKSH 90
REICCYSISCKE+DNIDITLQWLI HSKS
Sbjct: 157 REICCYSISCKEKDNIDITLQWLIQHSKSR 186
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 158 bits (400), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 74/90 (82%), Positives = 83/90 (92%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
MVDAAD +K+EAS+NELH L++KPQL GIP+LVLGNKRDLP ALDEKELI++MNL AIQD
Sbjct: 97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQD 156
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKSH 90
REICCYSISCKE+DNIDITLQWLI HSKS
Sbjct: 157 REICCYSISCKEKDNIDITLQWLIQHSKSR 186
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 157 bits (396), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/88 (82%), Positives = 82/88 (93%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
MVDAAD +K+EAS+NELH L++KPQL GIP+LVLGNKRDLP ALDEKELI++MNL AIQD
Sbjct: 106 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQD 165
Query: 61 REICCYSISCKERDNIDITLQWLIAHSK 88
REICCYSISCKE+DNIDITLQWLI HSK
Sbjct: 166 REICCYSISCKEKDNIDITLQWLIQHSK 193
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D ++++ +R ELH +I + +L ILV NK+DLPNA+ E+ ++++L I++
Sbjct: 91 VVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRE 150
Query: 61 REICCYSISCKERDNIDITLQWLIAH 86
R S D + WL H
Sbjct: 151 RNWFIQSTCATRGDGLYEGFDWLTTH 176
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD AD D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++ L I+D
Sbjct: 86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 145
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKS 89
R D + L WL ++ KS
Sbjct: 146 RNWYVQPSCATSGDGLYEGLTWLTSNYKS 174
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD AD D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++ L I+D
Sbjct: 74 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 133
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKS 89
R D + L WL ++ KS
Sbjct: 134 RNWYVQPSCATSGDGLYEGLTWLTSNYKS 162
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD AD D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++ L I+D
Sbjct: 87 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 146
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKS 89
R D + L WL ++ KS
Sbjct: 147 RNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD AD D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++ L I+D
Sbjct: 77 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 136
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKS 89
R D + L WL ++ KS
Sbjct: 137 RNWYVQPSCATSGDGLYEGLTWLTSNYKS 165
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD AD D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++ L I+D
Sbjct: 76 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 135
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKS 89
R D + L WL ++ KS
Sbjct: 136 RNWYVQPSCATSGDGLYEGLTWLTSNYKS 164
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD AD D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++ L I+D
Sbjct: 87 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 146
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKS 89
R D + L WL ++ KS
Sbjct: 147 RNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 53/89 (59%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D D++ S++EL A++E+ +L ++V NK+D+ A+ E+ + + L A++D
Sbjct: 78 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKD 137
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKS 89
R+ + S + +D ++WL+ KS
Sbjct: 138 RKWQIFKTSATKGTGLDEAMEWLVETLKS 166
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D D++ + ELH ++++ +L +LV NK+D P AL E+ +NL ++D
Sbjct: 92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKD 151
Query: 61 REICCYSISCKERDNIDITLQWLI 84
R + S + + I L WLI
Sbjct: 152 RSWSIVASSAIKGEGITEGLDWLI 175
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 51/84 (60%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D D++ +++EL+AL+++ +L +L+ NK+DLP+A E E+ +++ + +I +
Sbjct: 96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN 155
Query: 61 REICCYSISCKERDNIDITLQWLI 84
R S K D + + WL+
Sbjct: 156 RTWTIVKSSSKTGDGLVEGMDWLV 179
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD AD D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++ L I+D
Sbjct: 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 455
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKS 89
R D + L WL ++ KS
Sbjct: 456 RNWYVQPSCATSGDGLYEGLTWLTSNYKS 484
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 53/90 (58%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D D++ S++EL A++E+ +L ++V NK+D+ A+ E+ + + L A++D
Sbjct: 76 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKD 135
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKSH 90
R+ + S + +D ++WL+ KS
Sbjct: 136 RKWQIFKTSATKGTGLDEAMEWLVETLKSR 165
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D D++ +R+ELH ++ + +L +LV NK+DLPNA++ E+ D++ L +++
Sbjct: 94 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 153
Query: 61 REICCYSISCKERDNIDITLQWL 83
R S + + L WL
Sbjct: 154 RHWYIQSTCATSGEGLYEGLDWL 176
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD AD D+++ +R ELH +I + IL+ NK+DLP+A E+ +++ L I+D
Sbjct: 74 VVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQEKLGLTRIRD 133
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKS 89
R D + L WL ++ KS
Sbjct: 134 RNWYVQPSCATSGDGLYEGLTWLTSNYKS 162
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD AD D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++ L I+D
Sbjct: 74 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 133
Query: 61 REICCYSISCKERDNIDITLQWLIAH 86
R D + L WL ++
Sbjct: 134 RNWYVQPSCATSGDGLYEGLTWLTSN 159
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL---IDRMNLCA 57
+VDAAD ++ + +R EL AL +L +P ++LGNK D PNA+ E EL + +N
Sbjct: 75 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTG 134
Query: 58 IQ----DREICCYSISCKERDNIDITLQWL 83
Q R + + S R+ QWL
Sbjct: 135 SQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 164
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL---IDRMNLCA 57
+VDAAD ++ + +R EL AL +L +P ++LGNK D PNA+ E EL + +N
Sbjct: 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTG 156
Query: 58 IQ----DREICCYSISCKERDNIDITLQWL 83
Q R + + S R+ QWL
Sbjct: 157 SQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 186
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D +++ +R EL ++ + +L +LV NK+DLPNA++ E+ D++ L +++
Sbjct: 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 298
Query: 61 REICCYSISCKERDNIDITLQWL 83
R + D + L WL
Sbjct: 299 RNWYIQATCATSGDGLYEGLDWL 321
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D D++ +R EL ++ + ++ +LV NK DLP A+ E+ +++ L I++
Sbjct: 91 VVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQAMSISEVTEKLGLQTIKN 150
Query: 61 REICCYSISCKERDNIDITLQWL 83
R+ C + D + L WL
Sbjct: 151 RKWYCQTSCATNGDGLYEGLDWL 173
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D +++ +R EL ++ + +L +LV NK+DLPNA++ E+ D++ L +++
Sbjct: 90 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 149
Query: 61 REICCYSISCKERDNIDITLQWL 83
R + D + L WL
Sbjct: 150 RNWYIQATCATSGDGLYEGLDWL 172
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D +++ +R EL ++ + +L +LV NK+DLPNA++ E+ D++ L +++
Sbjct: 74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 133
Query: 61 REICCYSISCKERDNIDITLQWL 83
R + D + L WL
Sbjct: 134 RNWYIQATCATSGDGLYEGLDWL 156
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D +++ +R EL ++ + +L +LV NK+DLPNA++ E+ D++ L +++
Sbjct: 91 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 150
Query: 61 REICCYSISCKERDNIDITLQWL 83
R + D + L WL
Sbjct: 151 RNWYIQATCATSGDGLYEGLDWL 173
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D +++ +R EL ++ + +L +LV NK+DLPNA++ E+ D++ L +++
Sbjct: 76 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 135
Query: 61 REICCYSISCKERDNIDITLQWL 83
R + D + L WL
Sbjct: 136 RNWYIQATCATSGDGLYEGLDWL 158
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+AD +++ + EL +L+ + +L G +L+ NK+DLP AL + + + L +I+
Sbjct: 90 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRS 149
Query: 61 REICCYSISCKERDNIDITLQWLI 84
C S +N+ + WL+
Sbjct: 150 HHWCIQGCSAVTGENLLPGIDWLL 173
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D ++++ S +EL ++++ +L +LV NK+D+PNA+ EL D++ L ++
Sbjct: 103 VVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRS 162
Query: 61 REICCYSISCKERDNIDITLQWL 83
R + + + L WL
Sbjct: 163 RTWYVQATCATQGTGLYDGLDWL 185
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD AD ++L S+ EL +L+ + +PIL+LGNK D P A+ E+ L + L
Sbjct: 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYG--- 155
Query: 61 REICCYSISCKE 72
+ S+S KE
Sbjct: 156 QTTGKGSVSLKE 167
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD AD ++L S+ EL +L+ + +PIL+LGNK D P A+ E+ L + L
Sbjct: 96 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYG--- 152
Query: 61 REICCYSISCKE 72
+ S+S KE
Sbjct: 153 QTTGKGSVSLKE 164
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD AD ++L S+ EL +L+ + +PIL+LGNK D P A+ E+ L + L
Sbjct: 90 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYG--- 146
Query: 61 REICCYSISCKE 72
+ S+S KE
Sbjct: 147 QTTGKGSVSLKE 158
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D ++ +R + ++ + +L LV NK+DLP A+ E+ +++ L +I++
Sbjct: 91 VVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRN 150
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKSHT 91
R + + + L+WL K+ T
Sbjct: 151 RPWFIQATCATSGEGLYEGLEWLSNSLKNST 181
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D ++ +R + ++ + +L LV NK+DLP A+ E+ +++ L +I++
Sbjct: 74 VVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRN 133
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKSHT 91
R + + + L+WL K+ T
Sbjct: 134 RPWFIQATCATSGEGLYEGLEWLSNSLKNST 164
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 47/91 (51%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
++D+ D ++ +R + ++ + +L LV NK+DLP A+ E+ +++ L +I++
Sbjct: 91 VIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRN 150
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKSHT 91
R S + + L+WL + K+ +
Sbjct: 151 RPWFIQSTCATSGEGLYEGLEWLSNNLKNQS 181
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 43/83 (51%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D ++ +R + ++ + +L LV NK+DLP A+ E+ +++ L +I++
Sbjct: 91 VVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRN 150
Query: 61 REICCYSISCKERDNIDITLQWL 83
R + + + L+WL
Sbjct: 151 RPWFIQATCATSGEGLYEGLEWL 173
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+AD +++ + EL +L+ + +L G +L+ NK+DLP AL + + + L +I+
Sbjct: 92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALELDSIRS 151
Query: 61 REICCYSISCKERDNIDITLQWLI 84
S +++ + WL+
Sbjct: 152 HHWRIQGCSAVTGEDLLPGIDWLL 175
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D ++++ +EL ++ +L +L+ NK+DLPNA+ E+ D++ L ++++
Sbjct: 91 VVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRN 150
Query: 61 REICCYSISCKERDNIDITLQWL 83
R + + + L WL
Sbjct: 151 RTWYVQATCATQGTGLYEGLDWL 173
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCA--- 57
+VD AD +L S+ EL+AL+ + +PIL+LGNK D +A+ E++L + L
Sbjct: 109 LVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTT 168
Query: 58 ---------IQDREICCYSISCKERDNIDITLQWL 83
+ R + + S +R +WL
Sbjct: 169 GKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWL 203
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+AD + + + EL +L+ + +L G +L+ NK+DLP AL + + + L +I+
Sbjct: 92 VVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALELDSIRS 151
Query: 61 REICCYSISCKERDNIDITLQWLI 84
S +++ + WL+
Sbjct: 152 HHWRIQGCSAVTGEDLLPGIDWLL 175
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL 44
+VD+AD +++ + EL +L+ + +L G +L+ NK+DLP AL
Sbjct: 92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+AD +++ + EL +L+ + +L G +L+ NK+DLP AL + + + L +I+
Sbjct: 75 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRS 134
Query: 61 REICCYSISCKERDNIDITLQWLI 84
S +++ + WL+
Sbjct: 135 HHWRIQGCSAVTGEDLLPGIDWLL 158
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D D++ S++EL A +E+ +L ++V NK+D A E + + L A++D
Sbjct: 81 VVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXTSSEXANSLGLPALKD 140
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKSH 90
R+ + S + +D +WL+ KS
Sbjct: 141 RKWQIFKTSATKGTGLDEAXEWLVETLKSR 170
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
++D+AD + E + EL L+E+ +L +P+L+ NK+DL A E+ + +NL I+D
Sbjct: 78 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD 137
Query: 61 REICCYSISCKERDNIDITLQWL 83
R S S + + + W+
Sbjct: 138 RVWQIQSCSALTGEGVQDGMNWV 160
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
++D+AD + E + EL L+E+ +L +P+L+ NK+DL A E+ + +NL I+D
Sbjct: 90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD 149
Query: 61 REICCYSISCKERDNIDITLQWL 83
R S S + + + W+
Sbjct: 150 RVWQIQSCSALTGEGVQDGMNWV 172
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
++D+AD + E + EL L+E+ +L +P+L+ NK+DL A E+ + +NL I+D
Sbjct: 78 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD 137
Query: 61 REICCYSISCKERDNIDITLQWL 83
R S S + + + W+
Sbjct: 138 RVWQIQSCSALTGEGVQDGMNWV 160
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
++D+AD + E + EL L+E+ +L +P+L+ NK+DL A E+ + +NL I+D
Sbjct: 91 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD 150
Query: 61 REICCYSISCKERDNIDITLQWL 83
R S S + + + W+
Sbjct: 151 RVWQIQSCSALTGEGVQDGMNWV 173
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D +++ +R EL+ ++ L +L+ NK+D+ + E+ + L +I+D
Sbjct: 90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD 149
Query: 61 REI----CC 65
+ CC
Sbjct: 150 HQWHIQACC 158
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D +++ +R EL+ ++ L +L+ NK+D+ + E+ + L +I+D
Sbjct: 90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD 149
Query: 61 REI----CC 65
+ CC
Sbjct: 150 HQWHIQACC 158
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D +++ +R EL+ ++ L +L+ NK+D+ + E+ + L +I+D
Sbjct: 96 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD 155
Query: 61 R----EICC 65
+ CC
Sbjct: 156 HQWHIQACC 164
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D ++L ++ EL+ ++ L +L+ NK+D+ + E+ + L +I+D
Sbjct: 90 VVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKD 149
Query: 61 R----EICC 65
+ CC
Sbjct: 150 HPWHIQSCC 158
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D +++ +R EL+ ++ L +L+ NK+D+ + E+ + L +I+D
Sbjct: 95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD 154
Query: 61 R----EICC 65
+ CC
Sbjct: 155 HQWHIQACC 163
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 1 MVDAADTDKLEASRNELHALI-------EKPQLIGIPILVLGNKRDLPNALDEKELIDRM 53
+VD++D +L ++E+ A++ E P +P L NK D A EL++ +
Sbjct: 93 VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEIL 152
Query: 54 NLCAIQ-DREICCYSISCKERDNIDITLQWL 83
+L + D ++ + + + WL
Sbjct: 153 DLTTLMGDHPFVIFASNGLKGTGVHEGFSWL 183
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIG--IPILVLGNKRDLPNALDEKELIDRMNLCAI 58
++D++D ++ ++ EL L+ P + IPIL NK DL +A+ ++ + L I
Sbjct: 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENI 156
Query: 59 QDR--EICC 65
+D+ IC
Sbjct: 157 KDKPWHICA 165
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 29 IPILVLGNKRDLPN-ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHS 87
+P++++GNK DLP+ +D K+ D I E S K R +D L+
Sbjct: 110 VPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIE-----TSAKTRQGVDDAFYTLVREI 164
Query: 88 KSH 90
+ H
Sbjct: 165 RKH 167
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 29 IPILVLGNKRDLPN-ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHS 87
+P++++GNK DLP+ +D K+ D I E S K R +D L+
Sbjct: 110 VPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIE-----TSAKTRQGVDDAFYTLVREI 164
Query: 88 KSH 90
+ H
Sbjct: 165 RKH 167
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 29 IPILVLGNKRDLPN-ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHS 87
+P++++GNK DLP+ +D K+ D I E S K R +D L+
Sbjct: 110 VPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIE-----TSAKTRQGVDDAFYTLVREI 164
Query: 88 KSH 90
+ H
Sbjct: 165 RKH 167
>pdb|2JBW|A Chain A, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|B Chain B, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|C Chain C, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|D Chain D, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase
Length = 386
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 5 ADTDKLEASRNELHALIEKPQL---IGIPILVL-GNKRDLPNALDEK--ELI--DRMNLC 56
+ D LE +R +HA +E + I P +L G ++P + + EL+ + +NL
Sbjct: 277 SKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDEVPLSFVDTVLELVPAEHLNLV 336
Query: 57 AIQDREICCYSISCKER 73
+D + CC+++ + R
Sbjct: 337 VEKDGDHCCHNLGIRPR 353
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 29 IPILVLGNKRDLPN-ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHS 87
+P++++GNK DLP+ +D K+ D I E S K R +D L+
Sbjct: 110 VPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIE-----TSAKTRQGVDDAFYTLVREI 164
Query: 88 KSH 90
+ H
Sbjct: 165 RKH 167
>pdb|2VBI|A Chain A, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|B Chain B, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|C Chain C, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|D Chain D, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|E Chain E, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|F Chain F, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|G Chain G, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|H Chain H, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
Length = 566
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 6 DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKE-LIDRMNLCAI 58
D L+A+ + AL+EK P+++LG+K NAL E L D++ CA+
Sbjct: 191 DHTSLKAAVDATVALLEKS---ASPVMLLGSKLRAANALAATETLADKLQ-CAV 240
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 29 IPILVLGNKRDLPN-ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHS 87
+P++++GNK DLP+ +D K+ D I E S K R +D L+
Sbjct: 127 VPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIE-----TSAKTRQGVDDAFYTLVREI 181
Query: 88 KSH 90
+ H
Sbjct: 182 RKH 184
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 29 IPILVLGNKRDLPNAL 44
+PI++ NKRDLP+AL
Sbjct: 136 VPIVIQVNKRDLPDAL 151
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 29 IPILVLGNKRDLPNAL 44
+PI++ NKRDLP+AL
Sbjct: 136 VPIVIQVNKRDLPDAL 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,688,004
Number of Sequences: 62578
Number of extensions: 96635
Number of successful extensions: 316
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 65
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)