Query psy2977
Match_columns 92
No_of_seqs 229 out of 1243
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 22:23:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 99.9 8.9E-22 1.9E-26 115.5 10.2 90 1-90 91-180 (181)
2 KOG0070|consensus 99.9 2.1E-21 4.6E-26 112.2 9.1 90 1-90 91-180 (181)
3 PF00025 Arf: ADP-ribosylation 99.9 5.4E-21 1.2E-25 111.7 10.2 87 1-87 88-175 (175)
4 smart00177 ARF ARF-like small 99.9 6.1E-21 1.3E-25 111.3 9.8 88 1-88 87-174 (175)
5 cd04149 Arf6 Arf6 subfamily. 99.9 9.7E-21 2.1E-25 109.9 9.3 85 1-85 83-167 (168)
6 PTZ00133 ADP-ribosylation fact 99.8 2.4E-20 5.3E-25 109.5 10.3 91 1-91 91-181 (182)
7 cd04150 Arf1_5_like Arf1-Arf5- 99.8 2.4E-20 5.2E-25 107.3 9.4 85 1-85 74-158 (159)
8 KOG0071|consensus 99.8 1.1E-20 2.3E-25 105.5 7.6 89 1-89 91-179 (180)
9 cd04158 ARD1 ARD1 subfamily. 99.8 1.4E-19 3.1E-24 104.9 10.3 90 1-90 73-163 (169)
10 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 2.3E-19 5.1E-24 104.5 9.5 85 1-85 89-173 (174)
11 cd04161 Arl2l1_Arl13_like Arl2 99.8 4.6E-19 9.9E-24 102.7 9.6 85 1-85 73-166 (167)
12 smart00178 SAR Sar1p-like memb 99.8 7E-19 1.5E-23 103.4 9.7 86 1-86 91-183 (184)
13 cd04157 Arl6 Arl6 subfamily. 99.8 1.5E-18 3.1E-23 99.5 9.7 86 1-86 75-162 (162)
14 cd04154 Arl2 Arl2 subfamily. 99.8 1.2E-18 2.5E-23 101.3 9.4 85 1-85 88-172 (173)
15 KOG0075|consensus 99.8 1E-18 2.2E-23 98.3 8.6 91 1-91 95-185 (186)
16 cd04121 Rab40 Rab40 subfamily. 99.8 1E-18 2.2E-23 103.3 8.9 83 1-90 85-169 (189)
17 cd04156 ARLTS1 ARLTS1 subfamil 99.8 2.6E-18 5.5E-23 98.4 9.3 85 1-85 74-159 (160)
18 cd00879 Sar1 Sar1 subfamily. 99.8 3.5E-18 7.5E-23 100.5 10.1 87 1-87 93-190 (190)
19 KOG0073|consensus 99.8 1.5E-18 3.2E-23 99.0 8.0 90 1-90 90-180 (185)
20 cd04151 Arl1 Arl1 subfamily. 99.8 3.8E-18 8.2E-23 97.8 9.7 85 1-85 73-157 (158)
21 KOG0072|consensus 99.8 1.1E-18 2.5E-23 97.8 6.0 90 1-90 92-181 (182)
22 cd04103 Centaurin_gamma Centau 99.8 2.7E-18 5.8E-23 98.9 7.4 83 1-87 72-158 (158)
23 KOG0092|consensus 99.8 3.5E-18 7.6E-23 99.5 7.5 84 1-90 84-169 (200)
24 cd04120 Rab12 Rab12 subfamily. 99.8 1.2E-17 2.5E-22 99.7 9.4 84 1-89 79-164 (202)
25 KOG0078|consensus 99.7 1E-17 2.2E-22 98.8 8.0 84 1-90 91-176 (207)
26 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 3.2E-17 7E-22 96.2 9.8 89 1-89 82-171 (183)
27 PTZ00099 rab6; Provisional 99.7 2.4E-17 5.2E-22 96.5 9.1 83 1-89 59-143 (176)
28 cd04160 Arfrp1 Arfrp1 subfamil 99.7 2.6E-17 5.6E-22 94.8 9.2 85 1-85 80-166 (167)
29 cd04155 Arl3 Arl3 subfamily. 99.7 3.8E-17 8.3E-22 94.6 9.4 85 1-85 88-172 (173)
30 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 3.9E-18 8.4E-23 99.3 4.7 85 1-90 80-166 (172)
31 cd00877 Ran Ran (Ras-related n 99.7 3.3E-17 7.1E-22 94.8 8.5 84 1-91 79-162 (166)
32 smart00176 RAN Ran (Ras-relate 99.7 2.9E-17 6.4E-22 97.8 8.4 81 1-89 74-155 (200)
33 cd00878 Arf_Arl Arf (ADP-ribos 99.7 8.9E-17 1.9E-21 91.9 9.7 86 1-86 73-158 (158)
34 cd04122 Rab14 Rab14 subfamily. 99.7 6.7E-17 1.4E-21 93.3 9.0 83 1-89 81-165 (166)
35 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 6.9E-17 1.5E-21 96.0 9.2 85 1-90 80-170 (201)
36 cd04175 Rap1 Rap1 subgroup. T 99.7 5.6E-17 1.2E-21 93.3 8.4 83 1-88 79-163 (164)
37 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 6.6E-17 1.4E-21 93.5 8.6 83 1-85 74-163 (164)
38 cd04133 Rop_like Rop subfamily 99.7 7.5E-17 1.6E-21 94.4 8.3 81 1-88 79-173 (176)
39 cd04127 Rab27A Rab27a subfamil 99.7 9.1E-17 2E-21 93.6 8.5 85 1-90 93-179 (180)
40 cd01875 RhoG RhoG subfamily. 99.7 1.1E-16 2.5E-21 94.5 8.7 86 1-89 81-178 (191)
41 cd01873 RhoBTB RhoBTB subfamil 99.7 1.2E-16 2.7E-21 94.8 8.1 79 1-86 94-194 (195)
42 cd04142 RRP22 RRP22 subfamily. 99.7 2E-16 4.4E-21 94.0 8.7 87 1-91 87-177 (198)
43 cd04136 Rap_like Rap-like subf 99.7 1.8E-16 3.9E-21 90.8 8.3 82 1-87 79-162 (163)
44 PLN03071 GTP-binding nuclear p 99.7 1.4E-16 3E-21 96.0 8.0 81 1-89 92-173 (219)
45 KOG0084|consensus 99.7 1.5E-16 3.2E-21 93.1 7.6 85 1-91 88-175 (205)
46 PTZ00369 Ras-like protein; Pro 99.7 2.7E-16 5.9E-21 92.7 8.8 84 1-89 83-168 (189)
47 KOG0076|consensus 99.7 1.9E-17 4.1E-22 95.3 3.6 90 1-90 99-189 (197)
48 cd04138 H_N_K_Ras_like H-Ras/N 99.7 1.9E-16 4.1E-21 90.4 7.8 82 1-87 79-161 (162)
49 cd04159 Arl10_like Arl10-like 99.7 8E-16 1.7E-20 87.3 9.9 85 1-85 74-158 (159)
50 KOG0094|consensus 99.7 1.2E-16 2.6E-21 93.5 6.3 86 1-89 101-186 (221)
51 cd04126 Rab20 Rab20 subfamily. 99.7 4.3E-16 9.2E-21 94.0 8.9 87 1-88 74-190 (220)
52 smart00173 RAS Ras subfamily o 99.7 4.8E-16 1E-20 89.3 8.4 84 1-89 78-163 (164)
53 cd04145 M_R_Ras_like M-Ras/R-R 99.7 4.8E-16 1E-20 89.2 8.2 82 1-87 80-163 (164)
54 cd04117 Rab15 Rab15 subfamily. 99.7 6.5E-16 1.4E-20 89.0 8.7 80 1-86 79-160 (161)
55 cd04134 Rho3 Rho3 subfamily. 99.7 6.1E-16 1.3E-20 91.2 8.7 87 1-89 78-175 (189)
56 cd04144 Ras2 Ras2 subfamily. 99.7 6.5E-16 1.4E-20 91.1 8.6 85 1-90 77-165 (190)
57 cd01867 Rab8_Rab10_Rab13_like 99.7 9.9E-16 2.1E-20 88.5 9.1 83 1-89 82-166 (167)
58 cd04119 RJL RJL (RabJ-Like) su 99.7 8.5E-16 1.8E-20 88.2 8.6 83 1-88 79-167 (168)
59 cd04148 RGK RGK subfamily. Th 99.7 1.1E-16 2.4E-21 96.6 5.1 84 1-89 79-164 (221)
60 cd04143 Rhes_like Rhes_like su 99.7 1.1E-15 2.3E-20 93.7 9.4 83 1-87 78-170 (247)
61 cd04111 Rab39 Rab39 subfamily. 99.7 8.4E-16 1.8E-20 92.2 8.8 84 1-89 82-167 (211)
62 cd04176 Rap2 Rap2 subgroup. T 99.7 8.3E-16 1.8E-20 88.3 8.4 82 1-87 79-162 (163)
63 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 6.6E-16 1.4E-20 90.8 8.0 81 1-88 83-180 (182)
64 cd04110 Rab35 Rab35 subfamily. 99.7 1.1E-15 2.3E-20 90.8 9.0 82 1-89 85-168 (199)
65 cd04128 Spg1 Spg1p. Spg1p (se 99.7 2.8E-16 6.1E-21 92.3 6.4 86 1-89 79-167 (182)
66 cd01865 Rab3 Rab3 subfamily. 99.7 1.3E-15 2.9E-20 87.8 9.0 83 1-89 80-164 (165)
67 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 1E-15 2.3E-20 93.0 8.9 82 1-89 91-189 (232)
68 KOG0081|consensus 99.7 1.7E-16 3.7E-21 90.6 4.9 85 1-90 97-183 (219)
69 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1.4E-15 3.1E-20 87.6 8.8 83 1-89 81-165 (166)
70 cd04109 Rab28 Rab28 subfamily. 99.7 1.4E-15 3E-20 91.3 8.9 84 1-89 80-167 (215)
71 cd04140 ARHI_like ARHI subfami 99.7 9E-16 2E-20 88.5 7.8 81 1-86 79-163 (165)
72 cd04131 Rnd Rnd subfamily. Th 99.7 1.1E-15 2.4E-20 89.5 8.0 81 1-88 79-176 (178)
73 cd01871 Rac1_like Rac1-like su 99.6 1.5E-15 3.1E-20 88.7 8.3 84 1-86 79-173 (174)
74 cd04112 Rab26 Rab26 subfamily. 99.6 2.3E-15 5E-20 88.8 8.9 84 1-90 80-165 (191)
75 KOG0098|consensus 99.6 9.8E-17 2.1E-21 93.4 3.0 83 1-89 85-169 (216)
76 cd04139 RalA_RalB RalA/RalB su 99.6 2.3E-15 4.9E-20 86.2 8.7 84 1-89 78-163 (164)
77 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 3.5E-15 7.5E-20 86.8 8.7 84 1-89 79-166 (170)
78 cd01868 Rab11_like Rab11-like. 99.6 4E-15 8.8E-20 85.6 8.8 81 1-87 82-164 (165)
79 PLN03108 Rab family protein; P 99.6 4E-15 8.6E-20 89.1 9.0 83 1-89 85-169 (210)
80 cd01874 Cdc42 Cdc42 subfamily. 99.6 3E-15 6.6E-20 87.4 8.1 81 1-86 79-173 (175)
81 cd01864 Rab19 Rab19 subfamily. 99.6 5.6E-15 1.2E-19 85.1 8.9 82 1-87 82-165 (165)
82 cd04116 Rab9 Rab9 subfamily. 99.6 5.7E-15 1.2E-19 85.4 8.9 83 1-87 84-170 (170)
83 KOG0087|consensus 99.6 2.6E-15 5.6E-20 88.8 7.4 83 1-89 93-177 (222)
84 cd01863 Rab18 Rab18 subfamily. 99.6 6.2E-15 1.3E-19 84.4 8.8 82 1-87 79-161 (161)
85 cd01866 Rab2 Rab2 subfamily. 99.6 7.3E-15 1.6E-19 85.0 9.1 83 1-89 83-167 (168)
86 KOG0079|consensus 99.6 1.6E-15 3.4E-20 85.7 5.9 82 1-89 87-170 (198)
87 cd04106 Rab23_lke Rab23-like s 99.6 5.2E-15 1.1E-19 84.8 8.2 79 1-86 81-161 (162)
88 KOG0394|consensus 99.6 1.3E-15 2.7E-20 88.6 5.6 86 1-90 88-180 (210)
89 KOG0088|consensus 99.6 1.3E-15 2.8E-20 87.0 5.4 83 1-89 92-176 (218)
90 cd04124 RabL2 RabL2 subfamily. 99.6 4.3E-15 9.4E-20 85.5 7.7 82 1-90 79-160 (161)
91 cd04125 RabA_like RabA-like su 99.6 8.4E-15 1.8E-19 86.1 9.0 84 1-90 79-164 (188)
92 cd04115 Rab33B_Rab33A Rab33B/R 99.6 3.6E-15 7.7E-20 86.4 7.2 83 1-88 82-169 (170)
93 smart00174 RHO Rho (Ras homolo 99.6 8.1E-15 1.8E-19 84.9 8.4 81 1-88 76-172 (174)
94 cd01860 Rab5_related Rab5-rela 99.6 1.1E-14 2.5E-19 83.4 8.9 81 1-87 80-162 (163)
95 cd04137 RheB Rheb (Ras Homolog 99.6 9.6E-15 2.1E-19 85.1 8.7 85 1-90 79-165 (180)
96 KOG0395|consensus 99.6 9.7E-15 2.1E-19 86.8 8.6 84 1-89 81-166 (196)
97 cd04113 Rab4 Rab4 subfamily. 99.6 1.3E-14 2.8E-19 83.2 8.6 81 1-87 79-161 (161)
98 cd04146 RERG_RasL11_like RERG/ 99.6 1.1E-14 2.3E-19 83.9 8.2 83 1-88 78-164 (165)
99 cd04101 RabL4 RabL4 (Rab-like4 99.6 8.5E-15 1.8E-19 84.1 7.6 80 1-87 82-163 (164)
100 cd04132 Rho4_like Rho4-like su 99.6 1.1E-14 2.3E-19 85.5 8.1 83 1-90 79-169 (187)
101 cd04123 Rab21 Rab21 subfamily. 99.6 1.8E-14 4E-19 82.2 8.8 81 1-87 79-161 (162)
102 cd04177 RSR1 RSR1 subgroup. R 99.6 1.7E-14 3.6E-19 83.4 8.6 84 1-88 79-164 (168)
103 smart00175 RAB Rab subfamily o 99.6 1.9E-14 4.1E-19 82.5 8.8 83 1-89 79-163 (164)
104 cd04147 Ras_dva Ras-dva subfam 99.6 1.8E-14 4E-19 85.5 8.8 84 1-88 77-163 (198)
105 cd01862 Rab7 Rab7 subfamily. 99.6 2.7E-14 6E-19 82.4 9.1 86 1-90 79-169 (172)
106 KOG0091|consensus 99.6 2.9E-15 6.3E-20 85.9 4.7 84 1-89 88-174 (213)
107 cd01897 NOG NOG1 is a nucleola 99.6 1.2E-14 2.6E-19 83.8 7.4 80 1-87 86-167 (168)
108 PLN03110 Rab GTPase; Provision 99.6 1.5E-14 3.2E-19 87.1 7.9 83 1-89 91-175 (216)
109 PF00071 Ras: Ras family; Int 99.6 1.4E-14 3E-19 83.1 7.3 82 1-88 78-161 (162)
110 cd04118 Rab24 Rab24 subfamily. 99.6 4.2E-14 9.2E-19 83.3 9.0 82 1-89 80-167 (193)
111 cd01861 Rab6 Rab6 subfamily. 99.6 2.9E-14 6.3E-19 81.6 7.8 81 1-87 79-161 (161)
112 PRK12299 obgE GTPase CgtA; Rev 99.6 9.8E-15 2.1E-19 92.8 6.0 85 1-90 243-330 (335)
113 PLN03118 Rab family protein; P 99.5 1.5E-14 3.2E-19 86.6 5.6 84 1-89 92-178 (211)
114 cd04135 Tc10 TC10 subfamily. 99.5 7E-14 1.5E-18 81.0 8.2 80 1-87 78-173 (174)
115 cd04129 Rho2 Rho2 subfamily. 99.5 8.8E-14 1.9E-18 81.9 8.4 82 1-89 79-174 (187)
116 cd00876 Ras Ras family. The R 99.5 8.9E-14 1.9E-18 79.2 8.2 82 1-87 77-160 (160)
117 cd01892 Miro2 Miro2 subfamily. 99.5 1.1E-13 2.3E-18 80.4 8.5 78 1-88 84-166 (169)
118 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 1.2E-13 2.7E-18 83.5 8.9 82 1-89 79-177 (222)
119 KOG0093|consensus 99.5 4.2E-15 9E-20 83.9 2.3 84 1-90 100-185 (193)
120 cd01898 Obg Obg subfamily. Th 99.5 7.4E-14 1.6E-18 80.5 7.6 83 1-87 85-170 (170)
121 cd01893 Miro1 Miro1 subfamily. 99.5 3.7E-14 8E-19 81.9 6.2 84 1-89 77-165 (166)
122 cd00154 Rab Rab family. Rab G 99.5 1.7E-13 3.6E-18 77.6 8.1 79 1-85 79-159 (159)
123 KOG0086|consensus 99.5 8.1E-14 1.8E-18 79.3 6.4 84 1-90 88-173 (214)
124 cd04114 Rab30 Rab30 subfamily. 99.5 1.8E-13 3.8E-18 78.9 8.0 82 1-87 86-168 (169)
125 cd04130 Wrch_1 Wrch-1 subfamil 99.5 1.8E-13 3.9E-18 79.5 7.9 78 1-84 78-170 (173)
126 cd01870 RhoA_like RhoA-like su 99.5 2.7E-13 5.8E-18 78.6 8.5 85 1-87 79-174 (175)
127 TIGR02729 Obg_CgtA Obg family 99.5 8.6E-14 1.9E-18 88.3 6.9 83 1-87 242-328 (329)
128 KOG0074|consensus 99.5 2.5E-14 5.4E-19 80.4 2.9 88 1-88 92-179 (185)
129 KOG0080|consensus 99.5 2.3E-14 4.9E-19 82.0 2.5 85 1-90 90-176 (209)
130 PTZ00132 GTP-binding nuclear p 99.5 9.1E-13 2E-17 79.1 8.7 83 1-90 88-170 (215)
131 KOG0083|consensus 99.4 1.2E-14 2.6E-19 81.0 0.2 84 1-90 77-162 (192)
132 cd00157 Rho Rho (Ras homology) 99.4 6.6E-13 1.4E-17 76.5 7.5 78 1-85 78-170 (171)
133 cd01878 HflX HflX subfamily. 99.4 1.1E-12 2.3E-17 78.0 7.0 78 1-87 127-204 (204)
134 TIGR00157 ribosome small subun 99.4 1.1E-12 2.3E-17 80.5 6.4 77 1-86 43-121 (245)
135 PRK12297 obgE GTPase CgtA; Rev 99.4 2.9E-12 6.3E-17 83.6 8.4 83 1-90 243-329 (424)
136 cd01881 Obg_like The Obg-like 99.4 1.6E-12 3.6E-17 75.1 6.1 84 1-87 81-176 (176)
137 cd01890 LepA LepA subfamily. 99.4 6.8E-12 1.5E-16 72.9 7.7 78 1-88 97-177 (179)
138 PRK12296 obgE GTPase CgtA; Rev 99.4 2.6E-12 5.7E-17 85.1 6.4 60 26-90 282-342 (500)
139 TIGR02528 EutP ethanolamine ut 99.3 2.5E-12 5.4E-17 72.4 5.0 72 1-84 69-141 (142)
140 KOG0077|consensus 99.3 2.8E-12 6E-17 73.7 4.4 87 1-87 94-192 (193)
141 PRK03003 GTP-binding protein D 99.3 1.2E-11 2.7E-16 81.8 7.9 84 1-89 300-383 (472)
142 TIGR03156 GTP_HflX GTP-binding 99.3 1.3E-11 2.8E-16 79.1 7.0 77 1-87 275-351 (351)
143 PRK04213 GTP-binding protein; 99.3 1.3E-11 2.7E-16 73.3 6.1 64 27-91 129-195 (201)
144 PRK15467 ethanolamine utilizat 99.3 1.8E-11 3.9E-16 70.6 6.1 78 1-89 71-148 (158)
145 TIGR03594 GTPase_EngA ribosome 99.3 2.5E-11 5.4E-16 79.3 7.3 84 1-89 261-345 (429)
146 cd00882 Ras_like_GTPase Ras-li 99.3 6.4E-11 1.4E-15 65.9 7.6 81 1-85 75-157 (157)
147 KOG0097|consensus 99.2 9.9E-11 2.2E-15 66.1 7.5 84 1-90 90-175 (215)
148 cd01879 FeoB Ferrous iron tran 99.2 4.3E-11 9.4E-16 68.1 6.2 77 1-88 81-157 (158)
149 PRK11058 GTPase HflX; Provisio 99.2 1.2E-10 2.6E-15 76.3 8.4 81 1-89 283-363 (426)
150 cd01887 IF2_eIF5B IF2/eIF5B (i 99.2 1.2E-10 2.7E-15 66.8 7.3 61 27-88 101-166 (168)
151 PRK12298 obgE GTPase CgtA; Rev 99.2 8.6E-11 1.9E-15 76.2 7.2 87 1-89 244-334 (390)
152 TIGR00436 era GTP-binding prot 99.2 7.4E-11 1.6E-15 73.2 6.5 79 1-89 86-165 (270)
153 cd01888 eIF2_gamma eIF2-gamma 99.2 6.9E-11 1.5E-15 70.6 6.1 59 29-89 138-200 (203)
154 PRK05291 trmE tRNA modificatio 99.2 6.3E-11 1.4E-15 78.1 6.2 71 1-89 301-371 (449)
155 PRK15494 era GTPase Era; Provi 99.2 1.2E-10 2.5E-15 74.5 7.1 58 28-89 160-217 (339)
156 cd04164 trmE TrmE (MnmE, ThdF, 99.2 1.4E-10 2.9E-15 65.8 6.4 70 1-87 87-156 (157)
157 cd00881 GTP_translation_factor 99.2 5.3E-10 1.2E-14 65.2 8.9 62 27-88 113-187 (189)
158 KOG1489|consensus 99.2 1.2E-10 2.6E-15 73.1 6.2 79 1-86 281-365 (366)
159 COG2262 HflX GTPases [General 99.2 3.7E-10 8.1E-15 72.8 8.3 80 1-89 278-357 (411)
160 cd00880 Era_like Era (E. coli 99.1 3.4E-10 7.4E-15 63.7 7.3 82 1-87 82-163 (163)
161 cd01889 SelB_euk SelB subfamil 99.1 2.3E-10 5E-15 67.6 6.8 61 28-88 120-186 (192)
162 cd01895 EngA2 EngA2 subfamily. 99.1 4E-10 8.6E-15 64.7 7.3 81 1-86 91-173 (174)
163 cd04171 SelB SelB subfamily. 99.1 1.4E-10 3.1E-15 66.2 5.2 55 29-85 105-163 (164)
164 cd01894 EngA1 EngA1 subfamily. 99.1 3.7E-10 8E-15 64.0 6.8 53 28-87 105-157 (157)
165 TIGR00231 small_GTP small GTP- 99.1 4.7E-10 1E-14 63.1 7.0 71 9-84 89-160 (161)
166 KOG0095|consensus 99.1 3.8E-11 8.3E-16 68.3 2.1 84 1-89 86-170 (213)
167 KOG0393|consensus 99.1 3.2E-10 6.9E-15 67.3 6.0 85 1-88 83-179 (198)
168 PRK03003 GTP-binding protein D 99.1 4.9E-10 1.1E-14 74.3 7.4 77 1-89 124-200 (472)
169 PRK09518 bifunctional cytidyla 99.1 4.7E-10 1E-14 77.5 7.6 84 1-89 539-622 (712)
170 COG2229 Predicted GTPase [Gene 99.1 9.4E-10 2E-14 64.2 7.4 79 1-86 98-176 (187)
171 PRK00093 GTP-binding protein D 99.1 5.7E-10 1.2E-14 73.1 7.1 84 1-89 262-345 (435)
172 PRK12289 GTPase RsgA; Reviewed 99.1 3.7E-10 8E-15 72.4 5.9 77 1-86 96-173 (352)
173 KOG4252|consensus 99.1 2.5E-10 5.4E-15 66.8 3.9 82 1-89 99-182 (246)
174 PRK00089 era GTPase Era; Revie 99.0 9E-10 2E-14 68.9 6.6 81 1-89 91-172 (292)
175 PRK12288 GTPase RsgA; Reviewed 99.0 9.7E-10 2.1E-14 70.4 6.8 80 2-87 128-207 (347)
176 cd04163 Era Era subfamily. Er 99.0 6.7E-10 1.5E-14 63.2 5.3 57 28-87 111-168 (168)
177 TIGR01393 lepA GTP-binding pro 99.0 2.3E-09 5E-14 72.9 8.5 78 1-88 100-180 (595)
178 TIGR00437 feoB ferrous iron tr 99.0 4.4E-10 9.6E-15 76.2 4.7 76 1-87 79-154 (591)
179 cd01854 YjeQ_engC YjeQ/EngC. 99.0 1.2E-09 2.5E-14 68.5 6.0 76 1-85 85-161 (287)
180 cd01855 YqeH YqeH. YqeH is an 99.0 8.7E-10 1.9E-14 65.1 4.9 62 27-88 60-125 (190)
181 PRK00098 GTPase RsgA; Reviewed 99.0 7.3E-10 1.6E-14 69.7 4.6 77 1-85 87-164 (298)
182 cd01859 MJ1464 MJ1464. This f 99.0 8.9E-10 1.9E-14 63.1 4.6 56 28-88 41-96 (156)
183 PRK00454 engB GTP-binding prot 99.0 1.5E-09 3.4E-14 63.9 5.4 61 28-89 135-195 (196)
184 PF02421 FeoB_N: Ferrous iron 99.0 7.4E-10 1.6E-14 63.8 3.9 68 1-83 85-156 (156)
185 cd01891 TypA_BipA TypA (tyrosi 99.0 2E-09 4.4E-14 63.6 5.8 83 1-88 95-188 (194)
186 TIGR00450 mnmE_trmE_thdF tRNA 99.0 4E-09 8.7E-14 69.5 7.4 73 1-89 289-361 (442)
187 PF00009 GTP_EFTU: Elongation 99.0 3.3E-09 7.1E-14 62.6 6.2 61 27-88 121-187 (188)
188 KOG0096|consensus 98.9 5E-10 1.1E-14 65.8 2.5 82 1-89 89-170 (216)
189 cd04105 SR_beta Signal recogni 98.9 3.8E-09 8.3E-14 63.1 6.3 85 1-85 79-202 (203)
190 cd01849 YlqF_related_GTPase Yl 98.9 2.5E-09 5.3E-14 61.4 5.3 77 1-87 6-84 (155)
191 PRK05433 GTP-binding protein L 98.9 1.1E-08 2.5E-13 69.6 8.8 78 1-88 104-184 (600)
192 COG0536 Obg Predicted GTPase [ 98.9 2.6E-09 5.6E-14 67.8 5.1 86 1-90 244-335 (369)
193 cd01858 NGP_1 NGP-1. Autoanti 98.9 6.3E-09 1.4E-13 59.8 6.0 80 1-87 15-94 (157)
194 COG0532 InfB Translation initi 98.9 8.1E-09 1.7E-13 68.5 5.9 59 27-86 106-168 (509)
195 CHL00189 infB translation init 98.8 1.8E-08 3.8E-13 69.9 7.6 60 27-87 346-409 (742)
196 PRK09518 bifunctional cytidyla 98.8 1.4E-08 3.1E-13 70.3 6.9 56 27-89 382-437 (712)
197 cd01876 YihA_EngB The YihA (En 98.8 1.7E-08 3.7E-13 57.5 6.2 60 28-87 110-170 (170)
198 PRK04000 translation initiatio 98.8 2E-08 4.4E-13 65.7 7.2 58 29-88 140-201 (411)
199 TIGR00487 IF-2 translation ini 98.8 1.7E-08 3.6E-13 68.6 6.9 58 27-85 186-247 (587)
200 TIGR03680 eif2g_arch translati 98.8 1.6E-08 3.5E-13 66.1 6.6 58 29-88 135-196 (406)
201 TIGR00073 hypB hydrogenase acc 98.8 6.6E-09 1.4E-13 62.2 4.2 57 28-87 148-206 (207)
202 PRK05306 infB translation init 98.8 9.1E-09 2E-13 71.7 5.3 59 27-86 388-450 (787)
203 TIGR00101 ureG urease accessor 98.8 1E-08 2.2E-13 61.2 4.9 54 32-88 141-196 (199)
204 TIGR00475 selB selenocysteine- 98.8 1E-08 2.2E-13 69.6 5.4 61 28-89 102-167 (581)
205 cd01883 EF1_alpha Eukaryotic e 98.8 1.1E-08 2.5E-13 61.7 5.1 51 28-78 137-195 (219)
206 PRK13768 GTPase; Provisional 98.8 8.4E-09 1.8E-13 63.6 4.4 63 27-89 161-248 (253)
207 KOG0090|consensus 98.8 6.7E-08 1.5E-12 58.0 7.7 86 1-87 115-238 (238)
208 TIGR03597 GTPase_YqeH ribosome 98.8 5.4E-09 1.2E-13 67.4 3.3 58 28-86 90-151 (360)
209 KOG3883|consensus 98.8 2.6E-08 5.6E-13 57.1 5.3 84 1-88 91-175 (198)
210 COG0481 LepA Membrane GTPase L 98.8 8.1E-08 1.8E-12 63.6 8.1 56 28-88 128-186 (603)
211 cd04165 GTPBP1_like GTPBP1-lik 98.7 5E-08 1.1E-12 59.3 6.5 58 28-85 138-220 (224)
212 KOG4423|consensus 98.7 1.6E-08 3.5E-13 59.5 4.1 85 1-89 105-195 (229)
213 cd04102 RabL3 RabL3 (Rab-like3 98.7 4.6E-08 9.9E-13 58.6 6.2 42 1-42 84-143 (202)
214 COG1100 GTPase SAR1 and relate 98.7 8.5E-08 1.9E-12 57.4 7.2 88 1-89 84-186 (219)
215 TIGR00483 EF-1_alpha translati 98.7 1.2E-08 2.7E-13 66.9 3.7 51 28-78 141-197 (426)
216 TIGR03598 GTPase_YsxC ribosome 98.7 1.1E-08 2.4E-13 59.8 3.0 47 28-77 129-179 (179)
217 cd01896 DRG The developmentall 98.7 4.8E-08 1E-12 59.6 5.9 52 27-88 175-226 (233)
218 TIGR03594 GTPase_EngA ribosome 98.7 9.3E-08 2E-12 62.7 7.1 55 28-89 107-161 (429)
219 PRK00093 GTP-binding protein D 98.7 1.8E-07 3.8E-12 61.5 7.9 53 28-87 109-161 (435)
220 PRK13796 GTPase YqeH; Provisio 98.7 3.8E-08 8.2E-13 63.6 4.5 59 28-87 96-158 (365)
221 TIGR00491 aIF-2 translation in 98.7 9.4E-08 2E-12 65.1 6.5 25 62-86 190-214 (590)
222 PRK09554 feoB ferrous iron tra 98.7 7.1E-08 1.5E-12 67.4 6.0 76 1-87 92-167 (772)
223 PF10662 PduV-EutP: Ethanolami 98.7 8.7E-08 1.9E-12 54.4 5.3 53 28-84 89-142 (143)
224 KOG0462|consensus 98.7 2.1E-07 4.6E-12 62.4 7.8 56 28-88 177-235 (650)
225 PRK12317 elongation factor 1-a 98.6 5.5E-08 1.2E-12 63.9 4.7 51 29-79 140-196 (425)
226 TIGR01394 TypA_BipA GTP-bindin 98.6 1.6E-07 3.5E-12 64.1 6.7 83 1-88 94-191 (594)
227 KOG1145|consensus 98.6 1.7E-07 3.7E-12 62.9 6.1 61 25-86 250-314 (683)
228 PRK14845 translation initiatio 98.6 4.9E-07 1.1E-11 64.8 8.7 26 61-86 646-671 (1049)
229 TIGR03596 GTPase_YlqF ribosome 98.6 1.4E-07 3E-12 58.9 5.1 56 28-88 48-103 (276)
230 TIGR00750 lao LAO/AO transport 98.6 1.4E-07 3.1E-12 59.5 5.1 62 27-88 171-238 (300)
231 COG1160 Predicted GTPases [Gen 98.6 5.5E-07 1.2E-11 59.1 7.8 63 27-89 288-352 (444)
232 PTZ00327 eukaryotic translatio 98.6 3E-07 6.5E-12 61.1 6.6 58 29-88 172-233 (460)
233 PRK09866 hypothetical protein; 98.6 5E-07 1.1E-11 62.0 7.7 58 29-86 290-351 (741)
234 cd01856 YlqF YlqF. Proteins o 98.5 1.9E-07 4.2E-12 54.4 4.9 55 28-87 46-100 (171)
235 COG1159 Era GTPase [General fu 98.5 2.5E-07 5.3E-12 57.9 5.4 60 27-89 113-173 (298)
236 PRK04004 translation initiatio 98.5 8.7E-07 1.9E-11 60.5 8.5 24 62-85 192-215 (586)
237 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 9.8E-08 2.1E-12 54.0 3.3 67 1-75 18-84 (141)
238 PRK10512 selenocysteinyl-tRNA- 98.5 2.9E-07 6.2E-12 63.1 6.0 58 29-88 104-166 (614)
239 PRK10463 hydrogenase nickel in 98.5 1.4E-07 2.9E-12 59.3 4.0 55 29-86 231-287 (290)
240 PRK10218 GTP-binding protein; 98.5 7.6E-07 1.6E-11 60.9 6.9 83 1-88 98-195 (607)
241 COG0378 HypB Ni2+-binding GTPa 98.5 1.7E-07 3.6E-12 55.6 3.3 53 32-87 146-200 (202)
242 PRK09563 rbgA GTPase YlqF; Rev 98.5 3.1E-07 6.7E-12 57.7 4.6 56 28-88 51-106 (287)
243 COG0370 FeoB Fe2+ transport sy 98.4 7.7E-07 1.7E-11 60.8 6.2 74 1-89 88-165 (653)
244 COG0218 Predicted GTPase [Gene 98.4 1.7E-06 3.6E-11 51.6 6.0 61 27-89 134-198 (200)
245 PRK01889 GTPase RsgA; Reviewed 98.4 2.5E-06 5.4E-11 55.1 7.3 53 27-84 141-193 (356)
246 COG0486 ThdF Predicted GTPase 98.4 1.2E-06 2.6E-11 57.7 5.7 55 27-89 323-377 (454)
247 PLN00023 GTP-binding protein; 98.4 7.6E-07 1.6E-11 56.8 4.4 42 1-42 113-165 (334)
248 PRK09435 membrane ATPase/prote 98.3 1.3E-06 2.7E-11 56.0 5.1 59 30-88 196-260 (332)
249 KOG1673|consensus 98.3 1.9E-06 4.2E-11 49.6 4.9 85 1-88 99-186 (205)
250 COG1160 Predicted GTPases [Gen 98.3 2.8E-06 6E-11 55.9 6.0 54 27-87 111-164 (444)
251 cd01884 EF_Tu EF-Tu subfamily. 98.3 5E-06 1.1E-10 49.6 6.4 49 28-76 117-171 (195)
252 PF09439 SRPRB: Signal recogni 98.2 1.2E-06 2.5E-11 51.8 3.2 54 1-54 82-138 (181)
253 PF08477 Miro: Miro-like prote 98.2 9E-07 2E-11 48.2 2.6 37 1-39 80-119 (119)
254 cd04168 TetM_like Tet(M)-like 98.2 1.3E-05 2.8E-10 49.2 7.5 27 62-88 209-235 (237)
255 cd04166 CysN_ATPS CysN_ATPS su 98.2 2.7E-06 6E-11 51.0 4.1 51 29-79 131-185 (208)
256 PRK12736 elongation factor Tu; 98.2 1E-05 2.2E-10 52.9 7.1 61 28-88 127-201 (394)
257 COG1162 Predicted GTPases [Gen 98.2 2.7E-06 5.7E-11 53.6 3.6 59 26-87 108-166 (301)
258 PF03308 ArgK: ArgK protein; 98.2 1.6E-06 3.5E-11 53.6 2.6 60 29-88 168-230 (266)
259 COG4917 EutP Ethanolamine util 98.1 1.1E-05 2.5E-10 44.9 5.2 55 28-86 90-144 (148)
260 cd00066 G-alpha G protein alph 98.1 1.5E-05 3.3E-10 50.8 6.5 83 8-90 208-313 (317)
261 cd01899 Ygr210 Ygr210 subfamil 98.1 1E-05 2.2E-10 51.7 5.2 57 27-89 213-270 (318)
262 smart00275 G_alpha G protein a 98.0 4.6E-05 9.9E-10 49.1 7.6 83 7-89 230-335 (342)
263 PLN00043 elongation factor 1-a 98.0 2.2E-05 4.9E-10 52.2 6.2 51 28-78 144-203 (447)
264 COG1163 DRG Predicted GTPase [ 98.0 1.8E-05 3.8E-10 50.5 5.0 51 28-88 239-289 (365)
265 KOG1423|consensus 98.0 1.9E-05 4.2E-10 50.1 4.8 26 64-89 247-272 (379)
266 KOG1707|consensus 98.0 3E-06 6.5E-11 57.3 1.3 81 1-87 86-174 (625)
267 COG1703 ArgK Putative periplas 98.0 1.2E-05 2.7E-10 50.7 3.9 60 29-88 190-254 (323)
268 PRK12735 elongation factor Tu; 97.9 7.7E-05 1.7E-09 48.9 7.3 60 28-87 127-202 (396)
269 KOG1532|consensus 97.9 3.5E-05 7.5E-10 48.5 5.2 63 27-89 180-265 (366)
270 PRK00741 prfC peptide chain re 97.9 5.4E-05 1.2E-09 51.3 6.5 26 63-88 249-274 (526)
271 TIGR00485 EF-Tu translation el 97.9 8.4E-05 1.8E-09 48.7 6.8 59 28-86 127-199 (394)
272 CHL00071 tufA elongation facto 97.8 9.1E-05 2E-09 48.8 6.5 48 28-75 127-180 (409)
273 COG5257 GCD11 Translation init 97.8 4.3E-05 9.3E-10 49.0 4.6 59 29-89 141-203 (415)
274 PRK00049 elongation factor Tu; 97.8 0.00016 3.5E-09 47.4 7.2 60 28-87 127-202 (396)
275 PTZ00141 elongation factor 1- 97.8 3.6E-05 7.9E-10 51.2 3.8 51 28-78 144-203 (446)
276 PRK13351 elongation factor G; 97.8 0.00022 4.8E-09 49.7 7.7 26 63-88 253-278 (687)
277 PRK12740 elongation factor G; 97.7 0.00053 1.1E-08 47.8 9.0 26 63-88 237-262 (668)
278 cd04104 p47_IIGP_like p47 (47- 97.6 8.3E-05 1.8E-09 44.3 3.7 64 28-91 107-187 (197)
279 TIGR02034 CysN sulfate adenyly 97.6 0.00011 2.4E-09 48.4 4.4 50 29-78 134-187 (406)
280 COG1217 TypA Predicted membran 97.6 0.00018 3.9E-09 48.2 5.1 71 14-88 110-195 (603)
281 smart00010 small_GTPase Small 97.6 3.6E-05 7.8E-10 41.9 1.7 63 1-77 53-115 (124)
282 PRK09602 translation-associate 97.6 0.00023 4.9E-09 46.9 5.3 54 27-87 216-270 (396)
283 TIGR00484 EF-G translation elo 97.5 0.0015 3.2E-08 45.9 8.9 26 63-88 254-279 (689)
284 PRK05124 cysN sulfate adenylyl 97.5 4.1E-05 9E-10 51.3 1.3 51 29-79 161-216 (474)
285 PLN03127 Elongation factor Tu; 97.5 0.00076 1.6E-08 45.1 7.0 61 28-88 176-252 (447)
286 TIGR00503 prfC peptide chain r 97.5 0.0011 2.3E-08 45.2 7.8 26 63-88 250-275 (527)
287 KOG1490|consensus 97.5 0.00017 3.7E-09 48.6 3.7 57 26-86 279-339 (620)
288 KOG1144|consensus 97.4 0.0003 6.6E-09 49.5 4.7 28 62-89 661-688 (1064)
289 PLN03126 Elongation factor Tu; 97.4 0.001 2.3E-08 44.8 6.9 48 28-75 196-249 (478)
290 PF03029 ATP_bind_1: Conserved 97.4 0.00029 6.2E-09 43.4 3.8 57 28-87 156-236 (238)
291 COG3276 SelB Selenocysteine-sp 97.4 0.00027 5.8E-09 46.8 3.8 56 30-87 105-161 (447)
292 PRK05506 bifunctional sulfate 97.3 0.00026 5.6E-09 49.0 3.2 50 29-78 158-211 (632)
293 cd04167 Snu114p Snu114p subfam 97.2 0.00032 6.9E-09 42.2 2.8 36 1-41 101-136 (213)
294 cd04178 Nucleostemin_like Nucl 97.2 0.0008 1.7E-08 39.5 4.1 16 27-42 29-44 (172)
295 PRK12739 elongation factor G; 97.2 0.0044 9.6E-08 43.5 8.0 26 63-88 253-278 (691)
296 COG1084 Predicted GTPase [Gene 97.1 0.002 4.3E-08 41.4 5.7 78 2-86 255-334 (346)
297 PF06858 NOG1: Nucleolar GTP-b 97.1 0.00089 1.9E-08 32.3 3.2 36 2-39 21-58 (58)
298 COG5256 TEF1 Translation elong 97.1 0.0011 2.3E-08 43.8 4.0 49 29-78 146-201 (428)
299 PRK00007 elongation factor G; 97.0 0.0081 1.8E-07 42.3 8.3 26 63-88 255-280 (693)
300 COG5258 GTPBP1 GTPase [General 96.9 0.0033 7.1E-08 41.6 5.3 57 28-84 255-335 (527)
301 KOG1707|consensus 96.9 0.0096 2.1E-07 41.0 7.3 76 1-87 502-582 (625)
302 cd01886 EF-G Elongation factor 96.9 0.0067 1.5E-07 38.0 6.3 41 27-71 115-158 (270)
303 KOG0082|consensus 96.8 0.011 2.3E-07 38.6 6.8 83 8-90 242-346 (354)
304 KOG0461|consensus 96.7 0.0026 5.7E-08 41.5 3.7 61 29-89 123-194 (522)
305 KOG1191|consensus 96.7 0.0046 1E-07 41.7 4.8 59 28-88 389-450 (531)
306 COG2895 CysN GTPases - Sulfate 96.6 0.0022 4.8E-08 41.8 3.0 49 29-77 140-192 (431)
307 KOG0410|consensus 96.6 0.0015 3.1E-08 42.2 1.9 75 1-89 264-342 (410)
308 KOG3905|consensus 96.6 0.0029 6.3E-08 41.0 3.2 60 28-88 222-290 (473)
309 cd04169 RF3 RF3 subfamily. Pe 96.5 0.0035 7.6E-08 39.2 3.2 28 27-54 122-152 (267)
310 KOG0458|consensus 96.2 0.0042 9E-08 42.6 2.5 50 29-79 316-373 (603)
311 KOG0466|consensus 96.1 0.0081 1.8E-07 38.8 3.3 58 29-88 180-241 (466)
312 cd04170 EF-G_bact Elongation f 96.1 0.0062 1.3E-07 37.9 2.7 17 27-43 115-131 (268)
313 PF05783 DLIC: Dynein light in 96.1 0.011 2.3E-07 40.0 3.9 61 28-89 196-265 (472)
314 COG1161 Predicted GTPases [Gen 95.9 0.0079 1.7E-07 38.7 2.6 49 28-80 61-109 (322)
315 cd01885 EF2 EF2 (for archaea a 95.9 0.017 3.8E-07 35.2 3.9 36 1-41 103-138 (222)
316 KOG1424|consensus 95.8 0.0091 2E-07 40.6 2.6 63 2-72 182-244 (562)
317 cd01882 BMS1 Bms1. Bms1 is an 95.7 0.013 2.7E-07 35.8 2.8 47 28-74 132-182 (225)
318 PF00503 G-alpha: G-protein al 95.7 0.02 4.4E-07 37.6 3.8 80 8-87 283-389 (389)
319 cd04170 EF-G_bact Elongation f 95.7 0.021 4.6E-07 35.5 3.8 27 61-87 239-265 (268)
320 KOG2423|consensus 95.4 0.046 9.9E-07 36.6 4.7 61 16-81 233-293 (572)
321 KOG2484|consensus 95.1 0.031 6.6E-07 37.1 3.2 27 27-53 176-202 (435)
322 KOG2485|consensus 94.8 0.027 5.9E-07 36.2 2.4 27 28-54 73-99 (335)
323 KOG1487|consensus 94.7 0.04 8.7E-07 34.9 2.8 51 28-88 231-281 (358)
324 COG4108 PrfC Peptide chain rel 94.7 0.15 3.2E-06 34.6 5.5 31 24-54 129-162 (528)
325 cd01886 EF-G Elongation factor 94.6 0.07 1.5E-06 33.5 3.8 28 61-88 241-268 (270)
326 COG0012 Predicted GTPase, prob 94.5 0.088 1.9E-06 34.6 4.2 41 26-71 204-247 (372)
327 TIGR02836 spore_IV_A stage IV 94.4 0.16 3.4E-06 34.4 5.2 62 15-85 171-234 (492)
328 COG0050 TufB GTPases - transla 94.3 0.14 3E-06 33.1 4.6 61 28-88 127-201 (394)
329 KOG0463|consensus 94.0 0.4 8.7E-06 32.2 6.4 20 62-81 332-351 (641)
330 COG0523 Putative GTPases (G3E 94.0 0.21 4.5E-06 32.4 5.1 44 32-79 149-192 (323)
331 PTZ00258 GTP-binding protein; 93.9 0.16 3.4E-06 33.8 4.5 43 27-73 219-265 (390)
332 KOG0085|consensus 93.7 0.51 1.1E-05 29.7 6.2 84 6-89 244-350 (359)
333 PF04670 Gtr1_RagA: Gtr1/RagA 93.3 0.11 2.3E-06 32.2 2.8 86 1-89 83-177 (232)
334 PF08438 MMR_HSR1_C: GTPase of 92.7 0.049 1.1E-06 29.8 0.7 31 34-71 1-32 (109)
335 KOG0705|consensus 92.5 0.091 2E-06 36.5 1.9 83 2-88 103-189 (749)
336 PRK13505 formate--tetrahydrofo 92.4 0.62 1.3E-05 32.4 5.7 68 16-88 360-429 (557)
337 PF14331 ImcF-related_N: ImcF- 92.2 0.8 1.7E-05 28.8 5.7 71 15-89 57-132 (266)
338 KOG1143|consensus 91.4 1.1 2.4E-05 30.2 5.8 52 28-79 303-379 (591)
339 cd01852 AIG1 AIG1 (avrRpt2-ind 91.3 1.3 2.8E-05 26.2 5.7 59 29-90 117-186 (196)
340 PF03193 DUF258: Protein of un 90.6 0.39 8.4E-06 28.1 2.9 25 61-85 11-35 (161)
341 cd04169 RF3 RF3 subfamily. Pe 90.5 0.42 9.1E-06 30.0 3.3 27 62-88 239-265 (267)
342 cd01850 CDC_Septin CDC/Septin. 90.2 0.27 5.9E-06 31.0 2.2 15 28-42 143-157 (276)
343 PRK07560 elongation factor EF- 90.2 1.3 2.7E-05 31.9 5.7 14 28-41 139-152 (731)
344 KOG1486|consensus 90.2 1.4 3.1E-05 28.1 5.2 51 28-88 238-288 (364)
345 KOG2486|consensus 89.0 0.13 2.8E-06 32.8 0.1 60 27-86 247-314 (320)
346 PRK09601 GTP-binding protein Y 87.8 1.2 2.7E-05 29.4 4.0 41 26-71 197-240 (364)
347 smart00053 DYNc Dynamin, GTPas 87.6 4.8 0.0001 25.1 6.3 16 27-42 191-206 (240)
348 PF01926 MMR_HSR1: 50S ribosom 86.6 1.4 3.1E-05 23.6 3.3 10 28-37 107-116 (116)
349 KOG0459|consensus 85.9 2 4.4E-05 29.2 4.2 52 29-80 218-278 (501)
350 KOG0460|consensus 84.4 2.6 5.7E-05 28.1 4.2 59 29-87 171-244 (449)
351 PTZ00416 elongation factor 2; 83.7 1 2.2E-05 32.9 2.4 14 28-41 144-157 (836)
352 PF09547 Spore_IV_A: Stage IV 83.2 3.8 8.3E-05 28.1 4.6 54 27-85 179-234 (492)
353 PLN00116 translation elongatio 82.5 2.1 4.6E-05 31.4 3.5 15 27-41 149-163 (843)
354 PF02492 cobW: CobW/HypB/UreG, 81.2 1 2.3E-05 26.3 1.4 36 1-42 120-155 (178)
355 COG1908 FrhD Coenzyme F420-red 80.8 3.1 6.8E-05 23.3 3.1 58 30-90 56-124 (132)
356 cd03112 CobW_like The function 80.1 2 4.2E-05 24.8 2.3 9 32-40 150-158 (158)
357 KOG1249|consensus 79.5 1.9 4.2E-05 30.0 2.4 57 31-87 140-210 (572)
358 KOG3886|consensus 78.9 10 0.00023 24.0 5.2 41 1-43 88-131 (295)
359 cd01900 YchF YchF subfamily. 77.9 2.7 5.9E-05 26.7 2.6 40 27-71 194-236 (274)
360 KOG0099|consensus 73.3 2.3 4.9E-05 27.4 1.3 25 65-89 346-370 (379)
361 KOG0468|consensus 72.8 2.8 6E-05 30.4 1.8 14 27-40 248-261 (971)
362 COG0480 FusA Translation elong 72.5 11 0.00023 27.4 4.6 28 27-54 127-157 (697)
363 KOG3354|consensus 72.4 17 0.00036 21.7 4.6 26 64-90 164-189 (191)
364 PF05049 IIGP: Interferon-indu 71.6 8 0.00017 25.9 3.6 80 8-91 124-221 (376)
365 KOG1143|consensus 70.6 5.6 0.00012 27.0 2.7 58 27-89 275-334 (591)
366 PF07764 Omega_Repress: Omega 70.4 4.8 0.0001 19.7 1.8 19 68-86 43-61 (71)
367 TIGR02475 CobW cobalamin biosy 69.6 3.2 6.9E-05 27.2 1.5 21 32-52 177-197 (341)
368 TIGR03348 VI_IcmF type VI secr 69.0 22 0.00048 27.4 5.7 27 15-42 231-257 (1169)
369 TIGR00490 aEF-2 translation el 68.3 7.4 0.00016 28.1 3.2 15 28-42 138-152 (720)
370 COG3640 CooC CO dehydrogenase 68.0 9.9 0.00021 24.0 3.3 35 2-40 163-197 (255)
371 KOG4271|consensus 65.8 7.4 0.00016 29.2 2.7 29 62-90 3-31 (1100)
372 PF11111 CENP-M: Centromere pr 62.6 31 0.00068 20.7 5.6 82 1-88 71-153 (176)
373 KOG0465|consensus 62.1 10 0.00022 27.3 2.8 31 58-88 278-308 (721)
374 KOG0463|consensus 59.1 8.6 0.00019 26.2 2.0 18 27-44 272-289 (641)
375 PRK13507 formate--tetrahydrofo 54.1 65 0.0014 23.1 5.5 59 27-88 400-458 (587)
376 KOG4146|consensus 52.8 35 0.00077 18.2 3.4 36 29-73 65-100 (101)
377 PRK11537 putative GTP-binding 52.4 13 0.00028 24.2 2.0 11 32-42 154-164 (318)
378 cd00477 FTHFS Formyltetrahydro 52.2 58 0.0013 23.0 5.0 59 27-88 355-413 (524)
379 KOG1491|consensus 51.9 30 0.00064 23.3 3.5 17 26-42 222-238 (391)
380 COG4502 5'(3')-deoxyribonucleo 48.2 31 0.00068 20.2 2.9 30 6-37 95-124 (180)
381 KOG0447|consensus 47.9 61 0.0013 23.6 4.6 38 17-54 468-507 (980)
382 TIGR03884 sel_bind_Methan sele 46.0 42 0.00091 17.1 4.0 29 62-90 13-41 (74)
383 PRK13506 formate--tetrahydrofo 45.9 1.1E+02 0.0024 22.0 5.7 58 27-88 392-451 (578)
384 PF01268 FTHFS: Formate--tetra 45.1 43 0.00094 23.8 3.6 56 27-87 370-427 (557)
385 PF02662 FlpD: Methyl-viologen 44.2 40 0.00087 18.7 2.9 31 59-89 92-122 (124)
386 PRK14974 cell division protein 43.1 39 0.00085 22.3 3.1 41 31-81 282-323 (336)
387 PF10438 Cyc-maltodext_C: Cycl 42.4 11 0.00025 19.3 0.5 27 28-54 20-46 (78)
388 PF08103 Antimicrobial_8: Uper 42.3 21 0.00046 12.7 1.9 15 75-89 1-15 (17)
389 cd03114 ArgK-like The function 41.1 19 0.00041 20.5 1.3 9 31-39 140-148 (148)
390 PF11288 DUF3089: Protein of u 39.7 61 0.0013 20.0 3.4 27 10-37 77-103 (207)
391 PF11524 SeleniumBinding: Sele 38.4 58 0.0013 16.7 2.7 23 68-91 26-48 (81)
392 PRK10416 signal recognition pa 36.6 36 0.00077 22.2 2.2 41 30-80 261-302 (318)
393 PF13651 EcoRI_methylase: Aden 36.5 45 0.00098 22.1 2.6 41 5-54 141-181 (336)
394 KOG2535|consensus 35.8 71 0.0015 21.7 3.4 43 38-80 294-339 (554)
395 PF00627 UBA: UBA/TS-N domain; 35.4 38 0.00083 14.2 1.6 12 72-83 26-37 (37)
396 PF08309 LVIVD: LVIVD repeat; 33.7 16 0.00034 16.3 0.2 8 1-8 25-32 (42)
397 cd03363 TOPRIM_TopoIA_TopoI TO 30.5 76 0.0016 17.5 2.6 50 29-82 73-122 (123)
398 COG3523 IcmF Type VI protein s 30.3 1.9E+02 0.004 23.0 5.1 16 27-42 255-270 (1188)
399 PF12712 DUF3805: Domain of un 30.2 51 0.0011 19.0 1.9 26 65-90 40-65 (153)
400 PHA03050 glutaredoxin; Provisi 30.2 81 0.0018 17.0 2.7 7 29-35 70-76 (108)
401 cd02977 ArsC_family Arsenate R 30.2 62 0.0013 17.0 2.2 24 14-37 77-100 (105)
402 KOG2792|consensus 30.2 1.5E+02 0.0033 19.2 4.1 30 7-36 156-185 (280)
403 COG4752 Uncharacterized protei 29.7 91 0.002 18.4 2.8 15 71-85 141-155 (190)
404 cd03110 Fer4_NifH_child This p 29.1 1.2E+02 0.0026 17.4 3.7 15 28-42 143-157 (179)
405 COG1149 MinD superfamily P-loo 29.0 59 0.0013 21.1 2.2 26 27-53 213-238 (284)
406 PF00462 Glutaredoxin: Glutare 29.0 70 0.0015 14.7 2.3 11 26-36 47-57 (60)
407 COG4963 CpaE Flp pilus assembl 28.9 1.9E+02 0.0041 19.6 5.5 48 9-57 253-300 (366)
408 PF00349 Hexokinase_1: Hexokin 28.8 36 0.00079 20.7 1.2 17 72-89 103-119 (206)
409 COG2759 MIS1 Formyltetrahydrof 28.8 2.2E+02 0.0047 20.3 5.4 60 27-89 368-427 (554)
410 PRK02261 methylaspartate mutas 28.7 1.2E+02 0.0025 17.2 3.7 35 44-83 41-75 (137)
411 PLN02759 Formate--tetrahydrofo 28.6 2.2E+02 0.0048 20.9 5.0 57 27-88 449-508 (637)
412 PHA02096 hypothetical protein 28.6 96 0.0021 16.1 3.2 28 10-37 42-74 (103)
413 TIGR00064 ftsY signal recognit 28.5 1.1E+02 0.0024 19.4 3.4 42 30-81 219-261 (272)
414 COG0480 FusA Translation elong 28.1 1.4E+02 0.003 22.1 4.1 44 45-88 235-278 (697)
415 COG3596 Predicted GTPase [Gene 28.0 86 0.0019 20.5 2.8 63 28-90 148-224 (296)
416 KOG1954|consensus 27.9 1.3E+02 0.0027 20.9 3.6 15 28-42 211-225 (532)
417 cd00756 MoaE MoaE family. Memb 27.8 59 0.0013 18.1 1.9 27 64-90 82-108 (124)
418 PF02391 MoaE: MoaE protein; 27.5 41 0.0009 18.5 1.2 27 64-90 90-116 (117)
419 cd08366 APC10 APC10 subunit of 26.5 30 0.00066 19.8 0.6 17 65-81 9-25 (139)
420 TIGR01501 MthylAspMutase methy 26.4 1.3E+02 0.0029 17.1 3.7 45 39-89 34-78 (134)
421 KOG3929|consensus 25.5 42 0.00092 21.8 1.1 15 28-42 190-204 (363)
422 KOG0467|consensus 24.8 43 0.00093 25.0 1.2 12 28-39 124-135 (887)
423 PF11758 Bacteriocin_IIi: Aure 24.2 44 0.00095 15.7 0.8 18 72-89 30-47 (51)
424 KOG1610|consensus 23.5 1.6E+02 0.0035 19.5 3.5 33 2-39 83-115 (322)
425 PF06260 DUF1024: Protein of u 22.2 52 0.0011 17.0 0.9 24 65-88 11-34 (82)
426 cd03034 ArsC_ArsC Arsenate Red 21.9 1.1E+02 0.0023 16.5 2.2 24 15-38 77-100 (112)
427 PF10683 DBD_Tnp_Hermes: Herme 21.6 57 0.0012 16.3 0.9 20 66-85 29-48 (68)
428 KOG2743|consensus 21.4 63 0.0014 21.5 1.3 12 32-43 215-226 (391)
429 PF14784 ECIST_Cterm: C-termin 21.2 1.7E+02 0.0038 16.5 3.0 21 14-34 103-124 (126)
430 cd02072 Glm_B12_BD B12 binding 20.7 1.8E+02 0.0039 16.4 3.8 45 39-89 32-76 (128)
431 PF07034 ORC3_N: Origin recogn 20.4 1.1E+02 0.0024 20.1 2.3 58 28-89 87-145 (330)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.88 E-value=8.9e-22 Score=115.51 Aligned_cols=90 Identities=29% Similarity=0.546 Sum_probs=77.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++++++..+..++.++++.....++|++|++||+|++...+.+++.+.+++.....+.+.+++|||++|+||+++|
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~ 170 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHH
Confidence 68999999999998899988875555679999999999998888888888888766554566778899999999999999
Q ss_pred HHHHHhhhhc
Q psy2977 81 QWLIAHSKSH 90 (92)
Q Consensus 81 ~~l~~~i~~~ 90 (92)
+||++.+.++
T Consensus 171 ~~l~~~~~~~ 180 (181)
T PLN00223 171 DWLSNNIANK 180 (181)
T ss_pred HHHHHHHhhc
Confidence 9999998765
No 2
>KOG0070|consensus
Probab=99.87 E-value=2.1e-21 Score=112.19 Aligned_cols=90 Identities=30% Similarity=0.593 Sum_probs=85.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++|++++.++++++..++.++++...|+++.+||+|++++.+..++.+.+++..+..++|++..|+|.+|+|+.|.+
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl 170 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGL 170 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHH
Confidence 68999999999999999999998888899999999999999999999999999999888899999999999999999999
Q ss_pred HHHHHhhhhc
Q psy2977 81 QWLIAHSKSH 90 (92)
Q Consensus 81 ~~l~~~i~~~ 90 (92)
+||.+.+.++
T Consensus 171 ~wl~~~~~~~ 180 (181)
T KOG0070|consen 171 DWLSNNLKKR 180 (181)
T ss_pred HHHHHHHhcc
Confidence 9999998765
No 3
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.86 E-value=5.4e-21 Score=111.69 Aligned_cols=87 Identities=37% Similarity=0.715 Sum_probs=79.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcC-CCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQ-DREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++|++++.+++..+.+++++....++|++|++||+|++++.+.+++...+++..+. .+++.++.|||.+|+|+.++
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~ 167 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEG 167 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHH
T ss_pred EEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHH
Confidence 68999999999999999999987777789999999999999988999999988877765 67899999999999999999
Q ss_pred HHHHHHhh
Q psy2977 80 LQWLIAHS 87 (92)
Q Consensus 80 ~~~l~~~i 87 (92)
|+||.+++
T Consensus 168 l~WL~~~~ 175 (175)
T PF00025_consen 168 LEWLIEQI 175 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999875
No 4
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.86 E-value=6.1e-21 Score=111.33 Aligned_cols=88 Identities=32% Similarity=0.584 Sum_probs=74.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++++++.+..|+..+++.....++|++||+||+|+++..+.+++.+.+++.....+.+.++++||++|+||+++|
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~ 166 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGL 166 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHH
Confidence 58999999999999999998865444678999999999998777777888877766555667788899999999999999
Q ss_pred HHHHHhhh
Q psy2977 81 QWLIAHSK 88 (92)
Q Consensus 81 ~~l~~~i~ 88 (92)
+||.+.+.
T Consensus 167 ~~l~~~~~ 174 (175)
T smart00177 167 TWLSNNLK 174 (175)
T ss_pred HHHHHHhc
Confidence 99988764
No 5
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.85 E-value=9.7e-21 Score=109.89 Aligned_cols=85 Identities=32% Similarity=0.593 Sum_probs=71.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.++.++..|+.+++......++|++||+||+|+....+.+++.+.+++.......+.+++|||++|+|++++|
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~ 162 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 162 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHH
Confidence 68999999999998999888875444678999999999998766777888877655544556789999999999999999
Q ss_pred HHHHH
Q psy2977 81 QWLIA 85 (92)
Q Consensus 81 ~~l~~ 85 (92)
+||.+
T Consensus 163 ~~l~~ 167 (168)
T cd04149 163 TWLSS 167 (168)
T ss_pred HHHhc
Confidence 99975
No 6
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.85 E-value=2.4e-20 Score=109.47 Aligned_cols=91 Identities=26% Similarity=0.499 Sum_probs=75.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++++++..+..++.+++......++|++||+||+|+++..+.+++...++...+..+.+.++++||++|.|++++|
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~ 170 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGL 170 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHH
Confidence 68999999999998888888765444578999999999998776777787777765555566788899999999999999
Q ss_pred HHHHHhhhhcC
Q psy2977 81 QWLIAHSKSHT 91 (92)
Q Consensus 81 ~~l~~~i~~~~ 91 (92)
+||.+.+.++.
T Consensus 171 ~~l~~~i~~~~ 181 (182)
T PTZ00133 171 DWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHhc
Confidence 99999887653
No 7
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.84 E-value=2.4e-20 Score=107.33 Aligned_cols=85 Identities=28% Similarity=0.552 Sum_probs=69.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.++..+..|+.+++........|++|++||+|+.+....+++...++...+..+.+.++++||++|+||+++|
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 68999999999999989888765444578999999999997666666776766655444566788999999999999999
Q ss_pred HHHHH
Q psy2977 81 QWLIA 85 (92)
Q Consensus 81 ~~l~~ 85 (92)
+||++
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99975
No 8
>KOG0071|consensus
Probab=99.84 E-value=1.1e-20 Score=105.55 Aligned_cols=89 Identities=36% Similarity=0.604 Sum_probs=84.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++++++++++++++.++++++..+.|++|.+||+|++++.+.+++.+.+++..+++++|.+.++||.+|.|+.|.|
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~egl 170 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGL 170 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHH
Confidence 67999999999999999999999888999999999999999999999999999999888899999999999999999999
Q ss_pred HHHHHhhhh
Q psy2977 81 QWLIAHSKS 89 (92)
Q Consensus 81 ~~l~~~i~~ 89 (92)
.||.+.++.
T Consensus 171 swlsnn~~~ 179 (180)
T KOG0071|consen 171 SWLSNNLKE 179 (180)
T ss_pred HHHHhhccC
Confidence 999987654
No 9
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.83 E-value=1.4e-19 Score=104.91 Aligned_cols=90 Identities=21% Similarity=0.369 Sum_probs=72.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCc-CCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAI-QDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|+++++++.++..|+.+++......+.|+++|+||+|+.+..+.+++.+.+..... ....+.+++|||++|.||+++
T Consensus 73 V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 73 VVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 5799999999999999999987644566899999999999876677777666543332 123467899999999999999
Q ss_pred HHHHHHhhhhc
Q psy2977 80 LQWLIAHSKSH 90 (92)
Q Consensus 80 ~~~l~~~i~~~ 90 (92)
|+||++.+...
T Consensus 153 f~~l~~~~~~~ 163 (169)
T cd04158 153 LDWLSRQLVAA 163 (169)
T ss_pred HHHHHHHHhhc
Confidence 99999887643
No 10
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.82 E-value=2.3e-19 Score=104.47 Aligned_cols=85 Identities=24% Similarity=0.448 Sum_probs=70.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++++++..+..++.++++.....++|+++++||+|+++..+.+++.+.++.......++++++|||++|+||+++|
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHH
Confidence 68999999998888889888876555679999999999998766777777777654444456789999999999999999
Q ss_pred HHHHH
Q psy2977 81 QWLIA 85 (92)
Q Consensus 81 ~~l~~ 85 (92)
+||++
T Consensus 169 ~~l~~ 173 (174)
T cd04153 169 DWIAS 173 (174)
T ss_pred HHHhc
Confidence 99975
No 11
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.81 E-value=4.6e-19 Score=102.71 Aligned_cols=85 Identities=33% Similarity=0.506 Sum_probs=71.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcC---CCceEEEeeccccC----
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQ---DREICCYSISCKER---- 73 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~SA~~~---- 73 (92)
|||++++.++..+..|+..+++.....++|+++|+||+|+++..+..++.+.+.+..+. ..++.+++|||++|
T Consensus 73 V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~ 152 (167)
T cd04161 73 VVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKK 152 (167)
T ss_pred EEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCc
Confidence 68999999999999999998876555689999999999998877778888877655442 33578999999998
Q ss_pred --CCHHHHHHHHHH
Q psy2977 74 --DNIDITLQWLIA 85 (92)
Q Consensus 74 --~gi~~~~~~l~~ 85 (92)
.|++++|+||..
T Consensus 153 ~~~g~~~~~~wl~~ 166 (167)
T cd04161 153 IDPSIVEGLRWLLA 166 (167)
T ss_pred cccCHHHHHHHHhc
Confidence 899999999975
No 12
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.80 E-value=7e-19 Score=103.38 Aligned_cols=86 Identities=33% Similarity=0.492 Sum_probs=72.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcC-------CCceEEEeeccccC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQ-------DREICCYSISCKER 73 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~SA~~~ 73 (92)
|+|+++++++.....++.++++.....++|+++|+||+|++...+.+++.+.+++.... .+.+.+++|||++|
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~ 170 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRR 170 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccC
Confidence 57999999999988899888865445679999999999998878888999888765432 24678999999999
Q ss_pred CCHHHHHHHHHHh
Q psy2977 74 DNIDITLQWLIAH 86 (92)
Q Consensus 74 ~gi~~~~~~l~~~ 86 (92)
+|++++++||.+.
T Consensus 171 ~g~~~~~~wl~~~ 183 (184)
T smart00178 171 MGYGEGFKWLSQY 183 (184)
T ss_pred CChHHHHHHHHhh
Confidence 9999999999865
No 13
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.79 E-value=1.5e-18 Score=99.46 Aligned_cols=86 Identities=29% Similarity=0.550 Sum_probs=67.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCC--CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQL--IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++.....|+..+++.... .++|+++|+||+|+.+.....++...+++......++.+++|||++|.|+++
T Consensus 75 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 75 VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 57999999998888888888764322 4699999999999976655566666655443333456799999999999999
Q ss_pred HHHHHHHh
Q psy2977 79 TLQWLIAH 86 (92)
Q Consensus 79 ~~~~l~~~ 86 (92)
+|+||.++
T Consensus 155 ~~~~l~~~ 162 (162)
T cd04157 155 GVQWLQAQ 162 (162)
T ss_pred HHHHHhcC
Confidence 99999763
No 14
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.79 E-value=1.2e-18 Score=101.31 Aligned_cols=85 Identities=29% Similarity=0.533 Sum_probs=68.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.++.....|+..++......++|+++|+||+|+.+....+++.+.++........++++++||++|.|++++|
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 167 (173)
T cd04154 88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGI 167 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHH
Confidence 58999999999888888888765444679999999999998666666777766543333456789999999999999999
Q ss_pred HHHHH
Q psy2977 81 QWLIA 85 (92)
Q Consensus 81 ~~l~~ 85 (92)
+||.+
T Consensus 168 ~~l~~ 172 (173)
T cd04154 168 DWLVD 172 (173)
T ss_pred HHHhc
Confidence 99975
No 15
>KOG0075|consensus
Probab=99.79 E-value=1e-18 Score=98.31 Aligned_cols=91 Identities=69% Similarity=1.120 Sum_probs=85.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++|++.++.++.+++.++..+...++|+++++||+|++++.+..++.+.+++..+.++....|.+|++...|++...
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~ 174 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITL 174 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHH
Confidence 58999999999999999999999888999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHhhhhcC
Q psy2977 81 QWLIAHSKSHT 91 (92)
Q Consensus 81 ~~l~~~i~~~~ 91 (92)
+||.++-+..+
T Consensus 175 ~Wli~hsk~~~ 185 (186)
T KOG0075|consen 175 DWLIEHSKSLR 185 (186)
T ss_pred HHHHHHhhhhc
Confidence 99999876543
No 16
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.79 E-value=1e-18 Score=103.33 Aligned_cols=83 Identities=13% Similarity=0.158 Sum_probs=66.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|||++++.+|+.+..|+.++.... .+.|++||+||+|+.. ..+.++..... ...++.+++|||++|.||++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a-----~~~~~~~~e~SAk~g~~V~~ 157 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYA-----ERNGMTFFEVSPLCNFNITE 157 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHH-----HHcCCEEEEecCCCCCCHHH
Confidence 689999999999999999986542 5799999999999964 33444444433 23457899999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|++.+..+
T Consensus 158 ~F~~l~~~i~~~ 169 (189)
T cd04121 158 SFTELARIVLMR 169 (189)
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 17
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.78 E-value=2.6e-18 Score=98.42 Aligned_cols=85 Identities=28% Similarity=0.533 Sum_probs=67.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCc-CCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAI-QDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++++.++..+..|+.++++.....+.|+++|+||+|++...+.+++...++.... ...++++++|||++|+||+++
T Consensus 74 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 153 (160)
T cd04156 74 VVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEA 153 (160)
T ss_pred EEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHH
Confidence 5799999999998889988887644467999999999999766666777666543322 224578999999999999999
Q ss_pred HHHHHH
Q psy2977 80 LQWLIA 85 (92)
Q Consensus 80 ~~~l~~ 85 (92)
|++|.+
T Consensus 154 ~~~i~~ 159 (160)
T cd04156 154 FRKLAS 159 (160)
T ss_pred HHHHhc
Confidence 999975
No 18
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.78 E-value=3.5e-18 Score=100.49 Aligned_cols=87 Identities=34% Similarity=0.585 Sum_probs=70.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCc-----------CCCceEEEeec
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAI-----------QDREICCYSIS 69 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~S 69 (92)
|+|+++.+++.....++.++++.....+.|+++++||+|+....+.+++...++.... ....+.+++||
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCS 172 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeE
Confidence 5799999899888888888887554567999999999999877777788877764322 12346799999
Q ss_pred cccCCCHHHHHHHHHHhh
Q psy2977 70 CKERDNIDITLQWLIAHS 87 (92)
Q Consensus 70 A~~~~gi~~~~~~l~~~i 87 (92)
|++|+|++++|+||++.+
T Consensus 173 a~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 173 VVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred ecCCCChHHHHHHHHhhC
Confidence 999999999999998764
No 19
>KOG0073|consensus
Probab=99.78 E-value=1.5e-18 Score=98.95 Aligned_cols=90 Identities=28% Similarity=0.479 Sum_probs=81.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCc-CCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAI-QDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++|+.++++...++..++....+.+.|+++++||+|++++.+.+++...+++..+ +...|+++.|||.||+|+.+.
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEG 169 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHH
Confidence 6899999999999999999998777788999999999999988999999988887766 677899999999999999999
Q ss_pred HHHHHHhhhhc
Q psy2977 80 LQWLIAHSKSH 90 (92)
Q Consensus 80 ~~~l~~~i~~~ 90 (92)
++||...+.++
T Consensus 170 idWL~~~l~~r 180 (185)
T KOG0073|consen 170 IDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHH
Confidence 99999988763
No 20
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.78 E-value=3.8e-18 Score=97.78 Aligned_cols=85 Identities=34% Similarity=0.695 Sum_probs=65.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.++.....++..+++.....++|+++++||+|+.+.....++...++.......++++++|||++|.|++++|
T Consensus 73 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 73 VVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence 57999988887777777777655444579999999999997655556666665544333445789999999999999999
Q ss_pred HHHHH
Q psy2977 81 QWLIA 85 (92)
Q Consensus 81 ~~l~~ 85 (92)
+||++
T Consensus 153 ~~l~~ 157 (158)
T cd04151 153 DWLVN 157 (158)
T ss_pred HHHhc
Confidence 99976
No 21
>KOG0072|consensus
Probab=99.77 E-value=1.1e-18 Score=97.84 Aligned_cols=90 Identities=27% Similarity=0.447 Sum_probs=83.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++|..+...+..++..+++++++....+++++||+|.+.+....|+...+++..++++-+.+|.+||.+|+|+++++
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 68999999999999999999999888889999999999999888888999999988888888999999999999999999
Q ss_pred HHHHHhhhhc
Q psy2977 81 QWLIAHSKSH 90 (92)
Q Consensus 81 ~~l~~~i~~~ 90 (92)
+||.+.++++
T Consensus 172 DWL~~~l~~~ 181 (182)
T KOG0072|consen 172 DWLQRPLKSR 181 (182)
T ss_pred HHHHHHHhcc
Confidence 9999998865
No 22
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.77 E-value=2.7e-18 Score=98.88 Aligned_cols=83 Identities=12% Similarity=0.214 Sum_probs=62.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC----CCCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN----ALDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|||++|+++|+.+..|+.++.......++|+++|+||.|+.. ..+.++..+... ..+++.+++|||++|.||
T Consensus 72 v~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~e~SAk~~~~i 147 (158)
T cd04103 72 VFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA----DMKRCSYYETCATYGLNV 147 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH----HhCCCcEEEEecCCCCCH
Confidence 689999999999999999887765456799999999999842 122222222111 123478999999999999
Q ss_pred HHHHHHHHHhh
Q psy2977 77 DITLQWLIAHS 87 (92)
Q Consensus 77 ~~~~~~l~~~i 87 (92)
+++|+++++.+
T Consensus 148 ~~~f~~~~~~~ 158 (158)
T cd04103 148 ERVFQEAAQKI 158 (158)
T ss_pred HHHHHHHHhhC
Confidence 99999998653
No 23
>KOG0092|consensus
Probab=99.76 E-value=3.5e-18 Score=99.54 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=69.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|||+++.+||..++.|+.++..... +++-+.|||||+||.+ ..+.++...... ..+..+|++||+||.||++
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe-----~~gll~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAE-----SQGLLFFETSAKTGENVNE 157 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHH-----hcCCEEEEEecccccCHHH
Confidence 6899999999999999999987654 6788889999999976 445566655543 3457799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|..|++.+...
T Consensus 158 if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 158 IFQAIAEKLPCS 169 (200)
T ss_pred HHHHHHHhccCc
Confidence 999999988653
No 24
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.76 E-value=1.2e-17 Score=99.70 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=62.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|||++++++|+.+..|+..+... ...+.|+++|+||+|+... ...++..+... ...++.+++|||++|.||++
T Consensus 79 VfDvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~----~~~~~~~~etSAktg~gV~e 153 (202)
T cd04120 79 VYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQ----QITGMRFCEASAKDNFNVDE 153 (202)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH----hcCCCEEEEecCCCCCCHHH
Confidence 68999999999999888766443 3357999999999999642 23333222211 11246799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|+||++.+.+
T Consensus 154 ~F~~l~~~~~~ 164 (202)
T cd04120 154 IFLKLVDDILK 164 (202)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 25
>KOG0078|consensus
Probab=99.75 E-value=1e-17 Score=98.81 Aligned_cols=84 Identities=19% Similarity=0.232 Sum_probs=67.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|||+++..+|+++..|+..+-++.+ .++|.+|||||+|+.. ..+.+.-. .++ ...+..++++||++|.||++
T Consensus 91 vyDitne~Sfeni~~W~~~I~e~a~-~~v~~~LvGNK~D~~~~R~V~~e~ge-~lA----~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 91 VYDITNEKSFENIRNWIKNIDEHAS-DDVVKILVGNKCDLEEKRQVSKERGE-ALA----REYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred EEEccchHHHHHHHHHHHHHHhhCC-CCCcEEEeeccccccccccccHHHHH-HHH----HHhCCeEEEccccCCCCHHH
Confidence 6899999999999999998877643 5899999999999975 23333222 222 24578899999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|..|++.+.++
T Consensus 165 aF~~La~~i~~k 176 (207)
T KOG0078|consen 165 AFLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHHhh
Confidence 999999999853
No 26
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.74 E-value=3.2e-17 Score=96.21 Aligned_cols=89 Identities=27% Similarity=0.411 Sum_probs=68.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcC-CCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQ-DREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++++.++..+..|+.++.......++|+++|+||+|++...+.+++...+++.... ...+++++|||++|+|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 58999999998888888887764444579999999999997665666666555433221 22467899999999999999
Q ss_pred HHHHHHhhhh
Q psy2977 80 LQWLIAHSKS 89 (92)
Q Consensus 80 ~~~l~~~i~~ 89 (92)
|++|.+.+.+
T Consensus 162 ~~~l~~~l~~ 171 (183)
T cd04152 162 LEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHH
Confidence 9999988854
No 27
>PTZ00099 rab6; Provisional
Probab=99.74 E-value=2.4e-17 Score=96.48 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=64.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++|+.+..|+..++... ..+.|+++|+||+|+... .+.++..... ...++.+++|||++|.||++
T Consensus 59 v~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~e~~~~~-----~~~~~~~~e~SAk~g~nV~~ 132 (176)
T PTZ00099 59 VYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDLRKVTYEEGMQKA-----QEYNTMFHETSAKAGHNIKV 132 (176)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHH
Confidence 689999999999999999887653 257899999999999642 2333333321 12346789999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|+||++.+.+
T Consensus 133 lf~~l~~~l~~ 143 (176)
T PTZ00099 133 LFKKIAAKLPN 143 (176)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 28
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.74 E-value=2.6e-17 Score=94.81 Aligned_cols=85 Identities=29% Similarity=0.589 Sum_probs=67.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCC--cCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCA--IQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|+++++++.....++..+++.....++|+++++||+|++......++...+.... .....++++++||++|+|+++
T Consensus 80 vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 159 (167)
T cd04160 80 VIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVRE 159 (167)
T ss_pred EEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHH
Confidence 579999888988888888888765556799999999999987666666665544221 122457899999999999999
Q ss_pred HHHHHHH
Q psy2977 79 TLQWLIA 85 (92)
Q Consensus 79 ~~~~l~~ 85 (92)
+++||++
T Consensus 160 ~~~~l~~ 166 (167)
T cd04160 160 GIEWLVE 166 (167)
T ss_pred HHHHHhc
Confidence 9999975
No 29
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.74 E-value=3.8e-17 Score=94.64 Aligned_cols=85 Identities=32% Similarity=0.588 Sum_probs=69.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.++.....++..++......++|+++++||+|+......+++.+.+++.....+.++++++||++|+|++++|
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 167 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGM 167 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHH
Confidence 57999888888888888887765444579999999999997666667777777766555556788999999999999999
Q ss_pred HHHHH
Q psy2977 81 QWLIA 85 (92)
Q Consensus 81 ~~l~~ 85 (92)
+||++
T Consensus 168 ~~l~~ 172 (173)
T cd04155 168 NWVCK 172 (173)
T ss_pred HHHhc
Confidence 99976
No 30
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.73 E-value=3.9e-18 Score=99.31 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=63.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+|+.+..|+..+.......++|+++|+||+|+... .+.++..... ...++++++|||++|.||++
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLA-----REFNCPFFETSAALRHYIDD 154 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHH-----HHhCCEEEEEecCCCCCHHH
Confidence 5899999999999877655544322357999999999998643 2333332221 23457899999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|+||++.+.++
T Consensus 155 ~f~~l~~~~~~~ 166 (172)
T cd04141 155 AFHGLVREIRRK 166 (172)
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 31
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.73 E-value=3.3e-17 Score=94.85 Aligned_cols=84 Identities=23% Similarity=0.309 Sum_probs=64.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++++++..+..|+..+.... .++|+++|+||+|+.......+..+.. ......++++||++|+|++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f 151 (166)
T cd00877 79 MFDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITFH-----RKKNLQYYEISAKSNYNFEKPF 151 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHHH-----HHcCCEEEEEeCCCCCChHHHH
Confidence 689999999999988988887653 379999999999997432222222211 2345779999999999999999
Q ss_pred HHHHHhhhhcC
Q psy2977 81 QWLIAHSKSHT 91 (92)
Q Consensus 81 ~~l~~~i~~~~ 91 (92)
++|++.+.+..
T Consensus 152 ~~l~~~~~~~~ 162 (166)
T cd00877 152 LWLARKLLGNP 162 (166)
T ss_pred HHHHHHHHhcc
Confidence 99999987643
No 32
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.73 E-value=2.9e-17 Score=97.83 Aligned_cols=81 Identities=23% Similarity=0.367 Sum_probs=63.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL-DEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|||++++.+|..+..|+.++.... .++|+++|+||+|+.... ..+.. . +. ...++.+++|||++|+||+++
T Consensus 74 V~D~t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~-~~----~~~~~~~~e~SAk~~~~v~~~ 145 (200)
T smart00176 74 MFDVTARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-T-FH----RKKNLQYYDISAKSNYNFEKP 145 (200)
T ss_pred EEECCChHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-H-HH----HHcCCEEEEEeCCCCCCHHHH
Confidence 689999999999999999887642 479999999999985422 22222 1 11 234578999999999999999
Q ss_pred HHHHHHhhhh
Q psy2977 80 LQWLIAHSKS 89 (92)
Q Consensus 80 ~~~l~~~i~~ 89 (92)
|+||++.+.+
T Consensus 146 F~~l~~~i~~ 155 (200)
T smart00176 146 FLWLARKLIG 155 (200)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 33
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.73 E-value=8.9e-17 Score=91.90 Aligned_cols=86 Identities=36% Similarity=0.681 Sum_probs=69.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++++++..+..++..+.......+.|+++++||+|+......+++.+.++........++++++||++|.|++++|
T Consensus 73 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 152 (158)
T cd00878 73 VVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGL 152 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHH
Confidence 58999999999998888888775445679999999999998665666777766544223456789999999999999999
Q ss_pred HHHHHh
Q psy2977 81 QWLIAH 86 (92)
Q Consensus 81 ~~l~~~ 86 (92)
++|..+
T Consensus 153 ~~l~~~ 158 (158)
T cd00878 153 DWLLQQ 158 (158)
T ss_pred HHHhhC
Confidence 999753
No 34
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.72 E-value=6.7e-17 Score=93.26 Aligned_cols=83 Identities=14% Similarity=0.093 Sum_probs=64.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++|+.+..|+..+.... ..+.|+++|+||+|+.... +.++..+.. ...++++++|||++|+||++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~e 154 (166)
T cd04122 81 VYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFA-----DENGLLFLECSAKTGENVED 154 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHHH-----HHcCCEEEEEECCCCCCHHH
Confidence 689999999999999988875532 2568999999999996532 334443332 12356899999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|.++++.+.+
T Consensus 155 ~f~~l~~~~~~ 165 (166)
T cd04122 155 AFLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 35
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.72 E-value=6.9e-17 Score=95.99 Aligned_cols=85 Identities=27% Similarity=0.309 Sum_probs=64.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcC---CCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhccCCcCCCc-eEEEeeccccCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEK---PQLIGIPILVLGNKRDLP--NALDEKELIDRMNLCAIQDRE-ICCYSISCKERD 74 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~NK~Dl~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~SA~~~~ 74 (92)
|||++++++|+.+..|+..+... ....++|+++|+||+|+. ...+.+++.+... ..+ ..+++|||++|.
T Consensus 80 v~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sak~~~ 154 (201)
T cd04107 80 VFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCK-----ENGFIGWFETSAKEGI 154 (201)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHH-----HcCCceEEEEeCCCCC
Confidence 58999999999998887766432 123578999999999996 3445555554432 122 579999999999
Q ss_pred CHHHHHHHHHHhhhhc
Q psy2977 75 NIDITLQWLIAHSKSH 90 (92)
Q Consensus 75 gi~~~~~~l~~~i~~~ 90 (92)
||+++|+||.+.+.+.
T Consensus 155 ~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 155 NIEEAMRFLVKNILAN 170 (201)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988653
No 36
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.72 E-value=5.6e-17 Score=93.32 Aligned_cols=83 Identities=12% Similarity=0.196 Sum_probs=63.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+|+....|+..+.......+.|+++|+||+|+.... +..+..... ...+++++++||++|.|+++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 153 (164)
T cd04175 79 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA-----RQWGCAFLETSAKAKINVNE 153 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHH-----HHhCCEEEEeeCCCCCCHHH
Confidence 57999999999998898888765444679999999999996432 222222211 12246799999999999999
Q ss_pred HHHHHHHhhh
Q psy2977 79 TLQWLIAHSK 88 (92)
Q Consensus 79 ~~~~l~~~i~ 88 (92)
+|.||.+.+.
T Consensus 154 ~~~~l~~~l~ 163 (164)
T cd04175 154 IFYDLVRQIN 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998775
No 37
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.72 E-value=6.6e-17 Score=93.45 Aligned_cols=83 Identities=34% Similarity=0.546 Sum_probs=67.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCc-CCCceEEEeecccc------C
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAI-QDREICCYSISCKE------R 73 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~SA~~------~ 73 (92)
|+|++++.++..++.|+.+++... .++|+++|+||+|++.+...+++...++...+ ...++.+++|||++ +
T Consensus 74 V~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~ 151 (164)
T cd04162 74 VVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRM 151 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHH
Confidence 689999999999999998887542 57999999999999877777777666655444 34578899999998 9
Q ss_pred CCHHHHHHHHHH
Q psy2977 74 DNIDITLQWLIA 85 (92)
Q Consensus 74 ~gi~~~~~~l~~ 85 (92)
+||+++|+.|..
T Consensus 152 ~~v~~~~~~~~~ 163 (164)
T cd04162 152 EAVKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHHHhc
Confidence 999999998864
No 38
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.71 E-value=7.5e-17 Score=94.41 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=61.1
Q ss_pred CeeCCchhhHHHH-HHHHHHhhcCCCCCCCcEEEEeeCCCCCCC------------CCHHHHHHhhccCCcCCCce-EEE
Q psy2977 1 MVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKRDLPNA------------LDEKELIDRMNLCAIQDREI-CCY 66 (92)
Q Consensus 1 v~D~s~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~-~~~ 66 (92)
|||++++++|+.+ ..|+.++.... .+.|++|||||+||.+. .+.++..... ...+. .++
T Consensus 79 vyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a-----~~~~~~~~~ 151 (176)
T cd04133 79 AFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR-----KQIGAAAYI 151 (176)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH-----HHcCCCEEE
Confidence 6899999999998 57988876542 47999999999999542 2233322221 12234 589
Q ss_pred eeccccCCCHHHHHHHHHHhhh
Q psy2977 67 SISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 67 ~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
+|||++|.||+++|+.+++.+.
T Consensus 152 E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 152 ECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred ECCCCcccCHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 39
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.71 E-value=9.1e-17 Score=93.64 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=64.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++|..+..|+..+.......+.|+++|+||+|+.+. .+.++..+... ..+.+++++||++|.|+++
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~~~~v~~ 167 (180)
T cd04127 93 IFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD-----KYGIPYFETSAATGTNVEK 167 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHH
Confidence 6899999999999999988765433457899999999999643 23333333221 2245799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.++
T Consensus 168 l~~~l~~~~~~~ 179 (180)
T cd04127 168 AVERLLDLVMKR 179 (180)
T ss_pred HHHHHHHHHHhh
Confidence 999999887653
No 40
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.71 E-value=1.1e-16 Score=94.51 Aligned_cols=86 Identities=19% Similarity=0.231 Sum_probs=60.1
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhccCC---------cCCCc-eEEEee
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNALD-EKELIDRMNLCA---------IQDRE-ICCYSI 68 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~---------~~~~~-~~~~~~ 68 (92)
|||++++++|+.+. .|+..+... ..++|++||+||+||.+... .+.+.+ ..... ....+ +++++|
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~-~~~~~v~~~~~~~~a~~~~~~~~~e~ 157 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKE-QGQAPITPQQGGALAKQIHAVKYLEC 157 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhh-ccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence 58999999999996 477666543 25799999999999965321 111111 00000 01123 689999
Q ss_pred ccccCCCHHHHHHHHHHhhhh
Q psy2977 69 SCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 69 SA~~~~gi~~~~~~l~~~i~~ 89 (92)
||++|.||+++|++|++.+..
T Consensus 158 SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 158 SALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999988754
No 41
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.70 E-value=1.2e-16 Score=94.81 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=58.8
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCC---------------------CCHHHHHHhhccCCc
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNA---------------------LDEKELIDRMNLCAI 58 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~---------------------~~~~~~~~~~~~~~~ 58 (92)
|+|++++.+|+.+. .|+..+... ..+.|+++|+||+||... .+.++..+..
T Consensus 94 v~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a----- 166 (195)
T cd01873 94 CFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVA----- 166 (195)
T ss_pred EEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHH-----
Confidence 58999999999986 587776543 247899999999998631 1223332221
Q ss_pred CCCceEEEeeccccCCCHHHHHHHHHHh
Q psy2977 59 QDREICCYSISCKERDNIDITLQWLIAH 86 (92)
Q Consensus 59 ~~~~~~~~~~SA~~~~gi~~~~~~l~~~ 86 (92)
...++++++|||++|+||+++|+.+++.
T Consensus 167 ~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 167 KELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 2335689999999999999999999864
No 42
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.70 E-value=2e-16 Score=94.05 Aligned_cols=87 Identities=18% Similarity=0.170 Sum_probs=65.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCC--CCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKP--QLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~--~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|||++++++|+.+..|++.+.... ...++|+++|+||+|+.... +.++...... +..+.++++|||++|.||
T Consensus 87 v~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~~v 162 (198)
T cd04142 87 VYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCGYLECSAKYNWHI 162 (198)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCcEEEecCCCCCCH
Confidence 689999999999988888877643 23579999999999996432 2233322111 123567999999999999
Q ss_pred HHHHHHHHHhhhhcC
Q psy2977 77 DITLQWLIAHSKSHT 91 (92)
Q Consensus 77 ~~~~~~l~~~i~~~~ 91 (92)
+++|+.+++.+..+.
T Consensus 163 ~~lf~~i~~~~~~~~ 177 (198)
T cd04142 163 LLLFKELLISATTRG 177 (198)
T ss_pred HHHHHHHHHHhhccC
Confidence 999999998886654
No 43
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.70 E-value=1.8e-16 Score=90.82 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=61.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+|+....|+..+.......++|+++|+||+|+.+. ...++..... ...+.+++++||++|.|+++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 153 (163)
T cd04136 79 VYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA-----RQWGCPFYETSAKSKINVDE 153 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH-----HHcCCeEEEecCCCCCCHHH
Confidence 5799999999999888888876544467999999999999642 2222222211 12236799999999999999
Q ss_pred HHHHHHHhh
Q psy2977 79 TLQWLIAHS 87 (92)
Q Consensus 79 ~~~~l~~~i 87 (92)
+|++|.+.+
T Consensus 154 l~~~l~~~~ 162 (163)
T cd04136 154 VFADLVRQI 162 (163)
T ss_pred HHHHHHHhc
Confidence 999998865
No 44
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.69 E-value=1.4e-16 Score=96.00 Aligned_cols=81 Identities=22% Similarity=0.284 Sum_probs=63.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL-DEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|||++++.+|..+..|+..+... ..+.|+++|+||+|+.... ..+++ ... ...++++++|||++|.||+++
T Consensus 92 vfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~-~~~-----~~~~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFH-----RKKNLQYYEISAKSNYNFEKP 163 (219)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH-HHH-----HhcCCEEEEcCCCCCCCHHHH
Confidence 58999999999999999888754 3579999999999996422 22333 211 124577999999999999999
Q ss_pred HHHHHHhhhh
Q psy2977 80 LQWLIAHSKS 89 (92)
Q Consensus 80 ~~~l~~~i~~ 89 (92)
|+||++.+.+
T Consensus 164 f~~l~~~~~~ 173 (219)
T PLN03071 164 FLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHc
Confidence 9999998864
No 45
>KOG0084|consensus
Probab=99.69 E-value=1.5e-16 Score=93.14 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=67.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceE-EEeeccccCCCHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREIC-CYSISCKERDNID 77 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~SA~~~~gi~ 77 (92)
|||+|+.++|+.+..|+.++-.+. ..++|.++|+||+|+.+.. +.++..+... ..+.+ ++++||+++.||+
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~-----~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQEFAD-----ELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHHHHH-----hcCCcceeecccCCccCHH
Confidence 689999999999999999997753 3578999999999997643 3333333221 23445 9999999999999
Q ss_pred HHHHHHHHhhhhcC
Q psy2977 78 ITLQWLIAHSKSHT 91 (92)
Q Consensus 78 ~~~~~l~~~i~~~~ 91 (92)
++|..|+..++.+.
T Consensus 162 ~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 162 DAFLTLAKELKQRK 175 (205)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998653
No 46
>PTZ00369 Ras-like protein; Provisional
Probab=99.69 E-value=2.7e-16 Score=92.66 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=63.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++|+....|+..+.......+.|+++|+||+|+++.. ...+..... ...+++++++||++|.||++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~-----~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA-----KSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHhCCEEEEeeCCCCCCHHH
Confidence 58999999999998888887764334578999999999986432 322222221 12346799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|+||++.+.+
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 47
>KOG0076|consensus
Probab=99.69 E-value=1.9e-17 Score=95.27 Aligned_cols=90 Identities=28% Similarity=0.540 Sum_probs=78.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCc-CCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAI-QDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~SA~~~~gi~~~ 79 (92)
+||++|+++|+.....++.++.+....++|+++.+||+|+.++....++...+++... ..+...+.++||.+|+||++.
T Consensus 99 viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~eg 178 (197)
T KOG0076|consen 99 VIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEG 178 (197)
T ss_pred eecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHH
Confidence 5899999999999999999998877889999999999999998888888887774322 234567999999999999999
Q ss_pred HHHHHHhhhhc
Q psy2977 80 LQWLIAHSKSH 90 (92)
Q Consensus 80 ~~~l~~~i~~~ 90 (92)
..|+...+.++
T Consensus 179 i~w~v~~~~kn 189 (197)
T KOG0076|consen 179 IEWLVKKLEKN 189 (197)
T ss_pred HHHHHHHHhhc
Confidence 99999998776
No 48
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.69 E-value=1.9e-16 Score=90.42 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=61.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++++.+|.....|+..+.......+.|+++|+||+|+... ....+..... ...+++++++||++|.|++++
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEA 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHH
Confidence 5789999999988888888776544457899999999999642 2223333222 123467999999999999999
Q ss_pred HHHHHHhh
Q psy2977 80 LQWLIAHS 87 (92)
Q Consensus 80 ~~~l~~~i 87 (92)
|++|++.+
T Consensus 154 ~~~l~~~~ 161 (162)
T cd04138 154 FYTLVREI 161 (162)
T ss_pred HHHHHHHh
Confidence 99998765
No 49
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.68 E-value=8e-16 Score=87.27 Aligned_cols=85 Identities=67% Similarity=1.093 Sum_probs=66.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.++.....++..++......++|+++|+||+|+.+.....++...+.+.......++++++||++|.|+++++
T Consensus 74 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (159)
T cd04159 74 VVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVL 153 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHH
Confidence 57999888888888888888765444678999999999997655555555555444333445789999999999999999
Q ss_pred HHHHH
Q psy2977 81 QWLIA 85 (92)
Q Consensus 81 ~~l~~ 85 (92)
+||.+
T Consensus 154 ~~l~~ 158 (159)
T cd04159 154 DWLIK 158 (159)
T ss_pred HHHhh
Confidence 99975
No 50
>KOG0094|consensus
Probab=99.68 E-value=1.2e-16 Score=93.54 Aligned_cols=86 Identities=15% Similarity=0.180 Sum_probs=66.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|||++|.++|++..+|++.++...+..++-+++||||.||.+.. ++...-+....+..+..++++||++|.||.++|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr---qvs~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR---QVSIEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh---hhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 68999999999999999999988766668889999999997532 221111111123456689999999999999999
Q ss_pred HHHHHhhhh
Q psy2977 81 QWLIAHSKS 89 (92)
Q Consensus 81 ~~l~~~i~~ 89 (92)
..++..+..
T Consensus 178 rrIaa~l~~ 186 (221)
T KOG0094|consen 178 RRIAAALPG 186 (221)
T ss_pred HHHHHhccC
Confidence 999887754
No 51
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.68 E-value=4.3e-16 Score=94.04 Aligned_cols=87 Identities=20% Similarity=0.263 Sum_probs=61.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC---------------------CCCHHHHHHhhccCC--
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN---------------------ALDEKELIDRMNLCA-- 57 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~---------------------~~~~~~~~~~~~~~~-- 57 (92)
|||++++++|..+..|+..+... ...++|++||+||+|+.+ ..+.++.........
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~ 152 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKY 152 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcc
Confidence 68999999999998888887654 235689999999999964 112233222211000
Q ss_pred ------c-CCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 58 ------I-QDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 58 ------~-~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
+ .....++++|||++|.||+++|.++++.+.
T Consensus 153 ~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 153 KMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 0 001257999999999999999999998775
No 52
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.68 E-value=4.8e-16 Score=89.28 Aligned_cols=84 Identities=20% Similarity=0.242 Sum_probs=63.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++++....|...+.......+.|+++|+||+|+.... ..++...... ..+.+++++||++|.|+++
T Consensus 78 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 152 (164)
T smart00173 78 VYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR-----QWGCPFLETSAKERVNVDE 152 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH-----HcCCEEEEeecCCCCCHHH
Confidence 57999999999988888777654444578999999999996532 2233322221 2246799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|.+.+.+
T Consensus 153 l~~~l~~~~~~ 163 (164)
T smart00173 153 AFYDLVREIRK 163 (164)
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 53
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.67 E-value=4.8e-16 Score=89.16 Aligned_cols=82 Identities=20% Similarity=0.251 Sum_probs=62.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++.....|+..+.......+.|+++++||+|+.... ..++..... ...+++++++||++|.|+++
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELA-----RKLKIPYIETSAKDRLNVDK 154 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHH-----HHcCCcEEEeeCCCCCCHHH
Confidence 58999999999998888887764334578999999999996532 223332222 12245789999999999999
Q ss_pred HHHHHHHhh
Q psy2977 79 TLQWLIAHS 87 (92)
Q Consensus 79 ~~~~l~~~i 87 (92)
+|++|.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04145 155 AFHDLVRVI 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998865
No 54
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.67 E-value=6.5e-16 Score=88.96 Aligned_cols=80 Identities=14% Similarity=0.142 Sum_probs=60.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++|+.+..|+..+.... ..+.|+++|+||.|+.... ..++..... +..+.++++|||++|.||++
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 79 VYDISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLA-----KEYGMDFFETSACTNSNIKE 152 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 589999999999999988876542 2468999999999996433 233322221 12235789999999999999
Q ss_pred HHHHHHHh
Q psy2977 79 TLQWLIAH 86 (92)
Q Consensus 79 ~~~~l~~~ 86 (92)
+|+||++.
T Consensus 153 ~f~~l~~~ 160 (161)
T cd04117 153 SFTRLTEL 160 (161)
T ss_pred HHHHHHhh
Confidence 99999875
No 55
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.67 E-value=6.1e-16 Score=91.20 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=61.0
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhh---------ccCCcC-CCceEEEeec
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRM---------NLCAIQ-DREICCYSIS 69 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~S 69 (92)
|||++++++|+.+. .|+..+... ..+.|+++|+||+|+.......+..... +..... ...+.+++||
T Consensus 78 v~dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 155 (189)
T cd04134 78 CFSVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECS 155 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 58999999998875 588777654 2478999999999997543222111100 000001 1236799999
Q ss_pred cccCCCHHHHHHHHHHhhhh
Q psy2977 70 CKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 70 A~~~~gi~~~~~~l~~~i~~ 89 (92)
|++|.||+++|+||++.+..
T Consensus 156 Ak~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 156 AKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred CCcCCCHHHHHHHHHHHHhc
Confidence 99999999999999988764
No 56
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.67 E-value=6.5e-16 Score=91.13 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=62.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCC--CCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQ--LIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|||++++++|+.+..|+..+..... ..+.|+++|+||+|+... .+..+..+.. ...++.++++||++|.|+
T Consensus 77 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~SAk~~~~v 151 (190)
T cd04144 77 VYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALA-----RRLGCEFIEASAKTNVNV 151 (190)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHH-----HHhCCEEEEecCCCCCCH
Confidence 5799999999998888877764321 256899999999999642 2333322211 123467999999999999
Q ss_pred HHHHHHHHHhhhhc
Q psy2977 77 DITLQWLIAHSKSH 90 (92)
Q Consensus 77 ~~~~~~l~~~i~~~ 90 (92)
+++|+++++.+.++
T Consensus 152 ~~l~~~l~~~l~~~ 165 (190)
T cd04144 152 ERAFYTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987654
No 57
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.67 E-value=9.9e-16 Score=88.51 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=64.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++|+.+..|+..+.... ..+.|+++|+||+|+.+. ...++...... ..+.+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALAD-----EYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 579999999999989988876542 357899999999999743 23333333321 2346789999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|+++.+.+.+
T Consensus 156 ~~~~i~~~~~~ 166 (167)
T cd01867 156 AFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 58
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.67 E-value=8.5e-16 Score=88.20 Aligned_cols=83 Identities=20% Similarity=0.230 Sum_probs=62.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCC----CCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQ----LIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERD 74 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~----~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 74 (92)
|+|++++.+++....|+..+..... ....|+++|+||+|+.+ ..+.++..... ...+.+++++||++|.
T Consensus 79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 153 (168)
T cd04119 79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA-----ESKGFKYFETSACTGE 153 (168)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH-----HHcCCeEEEEECCCCC
Confidence 5799999999998889888765422 24689999999999963 22343333322 1234679999999999
Q ss_pred CHHHHHHHHHHhhh
Q psy2977 75 NIDITLQWLIAHSK 88 (92)
Q Consensus 75 gi~~~~~~l~~~i~ 88 (92)
|++++|++|.+.+.
T Consensus 154 gi~~l~~~l~~~l~ 167 (168)
T cd04119 154 GVNEMFQTLFSSIV 167 (168)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
No 59
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.67 E-value=1.1e-16 Score=96.55 Aligned_cols=84 Identities=20% Similarity=0.191 Sum_probs=64.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|||++++.+|+.+..|+..+.......++|+++|+||+|+.... ..++..... ...+++++++||++|.||++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACA-----VVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHH-----HHcCCeEEEecCCCCCCHHH
Confidence 58999999999998888887765434679999999999996432 222222211 12346789999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|+++++.+..
T Consensus 154 l~~~l~~~~~~ 164 (221)
T cd04148 154 LLEGIVRQIRL 164 (221)
T ss_pred HHHHHHHHHHh
Confidence 99999998863
No 60
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.67 E-value=1.1e-15 Score=93.70 Aligned_cols=83 Identities=18% Similarity=0.319 Sum_probs=64.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcC--------CCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeecc
Q psy2977 1 MVDAADTDKLEASRNELHALIEK--------PQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISC 70 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~--------~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA 70 (92)
|||++++++|+.+..|++++... ....++|+++|+||+|+.. ....+++.+.++. ...+.++++||
T Consensus 78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSA 153 (247)
T cd04143 78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSA 153 (247)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeC
Confidence 58999999999998888887643 1235799999999999963 3455566555431 12467999999
Q ss_pred ccCCCHHHHHHHHHHhh
Q psy2977 71 KERDNIDITLQWLIAHS 87 (92)
Q Consensus 71 ~~~~gi~~~~~~l~~~i 87 (92)
++|.||+++|++|++..
T Consensus 154 ktg~gI~elf~~L~~~~ 170 (247)
T cd04143 154 KKNSNLDEMFRALFSLA 170 (247)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999999865
No 61
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=8.4e-16 Score=92.16 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=64.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++|+.+..|+.++.........|++||+||+|+... ...++..... ...+..++++||++|.||++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA-----KDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH-----HHhCCEEEEEeCCCCCCHHH
Confidence 5899999999999999998876543346789999999999643 2333332221 12347799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|++.+.+
T Consensus 157 ~f~~l~~~~~~ 167 (211)
T cd04111 157 AFELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 62
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.66 E-value=8.3e-16 Score=88.29 Aligned_cols=82 Identities=12% Similarity=0.202 Sum_probs=61.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++|.+...|+..+.......++|+++|+||+|+.... ...+. ..+. ...+.++++|||++|.|+++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~v~~ 153 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEG-RALA----EEWGCPFMETSAKSKTMVNE 153 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHH-HHHH----HHhCCEEEEecCCCCCCHHH
Confidence 57999999999998888887764334679999999999985422 22222 1111 11235789999999999999
Q ss_pred HHHHHHHhh
Q psy2977 79 TLQWLIAHS 87 (92)
Q Consensus 79 ~~~~l~~~i 87 (92)
+|.|+++.+
T Consensus 154 l~~~l~~~l 162 (163)
T cd04176 154 LFAEIVRQM 162 (163)
T ss_pred HHHHHHHhc
Confidence 999999865
No 63
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.66 E-value=6.6e-16 Score=90.84 Aligned_cols=81 Identities=12% Similarity=0.102 Sum_probs=60.5
Q ss_pred CeeCCchhhHHHH-HHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHHhhccCCcCCCc-eE
Q psy2977 1 MVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKRDLPNA--------------LDEKELIDRMNLCAIQDRE-IC 64 (92)
Q Consensus 1 v~D~s~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~~ 64 (92)
|||++++.+|+.+ ..|+..+.... ++.|++||+||+||.+. .+.++..+.. ...+ ..
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a-----~~~~~~~ 155 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMA-----KQIGAAT 155 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHH-----HHcCCCE
Confidence 6899999999997 68888876542 47899999999998631 2333333221 1234 47
Q ss_pred EEeeccccCCC-HHHHHHHHHHhhh
Q psy2977 65 CYSISCKERDN-IDITLQWLIAHSK 88 (92)
Q Consensus 65 ~~~~SA~~~~g-i~~~~~~l~~~i~ 88 (92)
+++|||++|.| |+++|..+.+...
T Consensus 156 ~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 156 YIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred EEECCcCCCCCCHHHHHHHHHHHHh
Confidence 99999999998 9999999887543
No 64
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.66 E-value=1.1e-15 Score=90.84 Aligned_cols=82 Identities=15% Similarity=0.213 Sum_probs=63.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++|+.+..|+..+... ....|+++|+||+|+.... ..++...... ..++.++++||++|.||++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAG-----QMGISLFETSAKENINVEE 157 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEECCCCcCHHH
Confidence 58999999999999999887654 2468999999999997532 3333333221 2346799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|+||.+.+..
T Consensus 158 lf~~l~~~~~~ 168 (199)
T cd04110 158 MFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 65
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.66 E-value=2.8e-16 Score=92.31 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=60.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhccCCcCCCceEEEeeccccCCCHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE---KELIDRMNLCAIQDREICCYSISCKERDNID 77 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 77 (92)
|+|++++++|+.+..|+.++..... ...| ++|+||+|+....+. ..+.+... ......+.++++|||++|.||+
T Consensus 79 v~D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~-~~a~~~~~~~~e~SAk~g~~v~ 155 (182)
T cd04128 79 MFDLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITKQAR-KYAKAMKAPLIFCSTSHSINVQ 155 (182)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHHHHH-HHHHHcCCEEEEEeCCCCCCHH
Confidence 5899999999999999998876422 3466 678999999532211 11111100 0011234679999999999999
Q ss_pred HHHHHHHHhhhh
Q psy2977 78 ITLQWLIAHSKS 89 (92)
Q Consensus 78 ~~~~~l~~~i~~ 89 (92)
++|+++++.+.+
T Consensus 156 ~lf~~l~~~l~~ 167 (182)
T cd04128 156 KIFKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 66
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.66 E-value=1.3e-15 Score=87.81 Aligned_cols=83 Identities=14% Similarity=0.182 Sum_probs=62.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++++.+..|+..+.... ....|+++|+||+|+.+.. ..++..+... ..+++++++||++|.|+++
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~ 153 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLAD-----QLGFEFFEASAKENINVKQ 153 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCEEEEEECCCCCCHHH
Confidence 579999999999999988876532 2468999999999996432 2233322211 2345799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|++.+..
T Consensus 154 l~~~l~~~~~~ 164 (165)
T cd01865 154 VFERLVDIICD 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 67
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.66 E-value=1e-15 Score=92.97 Aligned_cols=82 Identities=11% Similarity=0.112 Sum_probs=60.8
Q ss_pred CeeCCchhhHHHH-HHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHHhhccCCcCCCce-E
Q psy2977 1 MVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKRDLPNA--------------LDEKELIDRMNLCAIQDREI-C 64 (92)
Q Consensus 1 v~D~s~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~-~ 64 (92)
|||++++++|+.+ ..|+.++.... .+.|+++|+||+||... .+.++..+.. ...+. .
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a-----~~~~~~~ 163 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALA-----KQLGAEV 163 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHH-----HHcCCCE
Confidence 6899999999985 68888876542 46899999999999631 2333333222 12344 6
Q ss_pred EEeeccccCC-CHHHHHHHHHHhhhh
Q psy2977 65 CYSISCKERD-NIDITLQWLIAHSKS 89 (92)
Q Consensus 65 ~~~~SA~~~~-gi~~~~~~l~~~i~~ 89 (92)
+++|||++|+ ||+++|..++..+.+
T Consensus 164 ~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 164 YLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred EEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 8999999998 899999999987654
No 68
>KOG0081|consensus
Probab=99.66 E-value=1.7e-16 Score=90.62 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=68.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
++|.++.++|-++++|+-++..+..+.+..+++++||.||++.. +.++..+.. ...++++|++||.||.||++
T Consensus 97 iFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La-----~kyglPYfETSA~tg~Nv~k 171 (219)
T KOG0081|consen 97 IFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALA-----DKYGLPYFETSACTGTNVEK 171 (219)
T ss_pred EEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHH-----HHhCCCeeeeccccCcCHHH
Confidence 47999999999999999998877777778899999999997543 222222221 24568899999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+++.|.+.+.++
T Consensus 172 ave~LldlvM~R 183 (219)
T KOG0081|consen 172 AVELLLDLVMKR 183 (219)
T ss_pred HHHHHHHHHHHH
Confidence 999999888654
No 69
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.66 E-value=1.4e-15 Score=87.56 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=63.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++|..+..|+..+.... ..+.|+++|+||+|+... ...++...... ..+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-----ELGIPFLETSAKNATNVEQ 154 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCCCcCHHH
Confidence 589999999999999988876532 246899999999998643 23333333221 2356799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|.+|.+.+.+
T Consensus 155 ~~~~i~~~~~~ 165 (166)
T cd01869 155 AFMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 70
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.66 E-value=1.4e-15 Score=91.34 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=62.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCC--CCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQ--LIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|||++++++|+....|+..+..... ..+.|+++|+||+|+... ...++..... ...++.+++|||++|+||
T Consensus 80 V~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~-----~~~~~~~~~iSAktg~gv 154 (215)
T cd04109 80 VYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFA-----QANGMESCLVSAKTGDRV 154 (215)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCCCH
Confidence 6899999999999888887765322 235789999999999642 2323322221 123467899999999999
Q ss_pred HHHHHHHHHhhhh
Q psy2977 77 DITLQWLIAHSKS 89 (92)
Q Consensus 77 ~~~~~~l~~~i~~ 89 (92)
+++|++|++.+..
T Consensus 155 ~~lf~~l~~~l~~ 167 (215)
T cd04109 155 NLLFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.65 E-value=9e-16 Score=88.52 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=58.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcC--CCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEK--PQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|++++++++....|+..+... ....++|+++|+||+|+... ...++..... ...+..+++|||++|.||
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~SA~~g~~v 153 (165)
T cd04140 79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACA-----TEWNCAFMETSAKTNHNV 153 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHH-----HHhCCcEEEeecCCCCCH
Confidence 58999999999888877655432 12357899999999999642 2222222111 123467899999999999
Q ss_pred HHHHHHHHHh
Q psy2977 77 DITLQWLIAH 86 (92)
Q Consensus 77 ~~~~~~l~~~ 86 (92)
+++|+||.+.
T Consensus 154 ~~~f~~l~~~ 163 (165)
T cd04140 154 QELFQELLNL 163 (165)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 72
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=1.1e-15 Score=89.53 Aligned_cols=81 Identities=11% Similarity=0.070 Sum_probs=59.6
Q ss_pred CeeCCchhhHHHH-HHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHHhhccCCcCCCce-E
Q psy2977 1 MVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKRDLPNA--------------LDEKELIDRMNLCAIQDREI-C 64 (92)
Q Consensus 1 v~D~s~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~-~ 64 (92)
|||++++++|+.+ ..|+..+.... .+.|+++|+||+||.+. .+.++..+.. ...+. .
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a-----~~~~~~~ 151 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA-----KQLGAEI 151 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH-----HHhCCCE
Confidence 6899999999996 68888776542 47899999999999541 2233322221 12343 6
Q ss_pred EEeeccccCCC-HHHHHHHHHHhhh
Q psy2977 65 CYSISCKERDN-IDITLQWLIAHSK 88 (92)
Q Consensus 65 ~~~~SA~~~~g-i~~~~~~l~~~i~ 88 (92)
+++|||++|+| |+++|..+.+...
T Consensus 152 ~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 152 YLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred EEECccCcCCcCHHHHHHHHHHHHh
Confidence 89999999995 9999999988543
No 73
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.65 E-value=1.5e-15 Score=88.66 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=56.7
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhc--c------CCcCCCc-eEEEeec
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNAL-DEKELIDRMN--L------CAIQDRE-ICCYSIS 69 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~--~------~~~~~~~-~~~~~~S 69 (92)
|||++++++|..+. .|+..+... ..+.|+++|+||+|+.+.. ..+.+.+... . ......+ ..+++||
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 156 (174)
T cd01871 79 CFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 156 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEec
Confidence 58999999999986 577666543 2479999999999996421 1111111000 0 0001122 4799999
Q ss_pred cccCCCHHHHHHHHHHh
Q psy2977 70 CKERDNIDITLQWLIAH 86 (92)
Q Consensus 70 A~~~~gi~~~~~~l~~~ 86 (92)
|++|+|++++|+.+++.
T Consensus 157 a~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 157 ALTQKGLKTVFDEAIRA 173 (174)
T ss_pred ccccCCHHHHHHHHHHh
Confidence 99999999999999874
No 74
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=2.3e-15 Score=88.85 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=63.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++++.+..|+..+.... ..++|+++|+||+|+... ...++..... ...+.+++++||++|.|+++
T Consensus 80 v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-----~~~~~~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 80 LYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLA-----KEYGVPFMETSAKTGLNVEL 153 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHH
Confidence 589999999999988988877542 246899999999999532 2333333221 12245799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|++.+...
T Consensus 154 l~~~l~~~~~~~ 165 (191)
T cd04112 154 AFTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 75
>KOG0098|consensus
Probab=99.64 E-value=9.8e-17 Score=93.36 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=67.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|||++.+++|+....|+..+.++. ..++.+++++||+||.. +.+.+|-.... +.++..++++||+|++||+|
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA-----~ehgLifmETSakt~~~VEE 158 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFA-----REHGLIFMETSAKTAENVEE 158 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHH-----HHcCceeehhhhhhhhhHHH
Confidence 689999999999999999998863 46899999999999964 34445544332 34667789999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|...+..+.+
T Consensus 159 aF~nta~~Iy~ 169 (216)
T KOG0098|consen 159 AFINTAKEIYR 169 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999888754
No 76
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.64 E-value=2.3e-15 Score=86.19 Aligned_cols=84 Identities=18% Similarity=0.290 Sum_probs=62.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++.....|+..+.......++|+++|+||+|+... ....+...... ..+.+++++||++|+|+++
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 152 (164)
T cd04139 78 VFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-----QWGVPYVETSAKTRQNVEK 152 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCeEEEeeCCCCCCHHH
Confidence 4788899999888888888776533457999999999999752 22333222211 1235799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|+++.+++..
T Consensus 153 l~~~l~~~~~~ 163 (164)
T cd04139 153 AFYDLVREIRQ 163 (164)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 77
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.63 E-value=3.5e-15 Score=86.75 Aligned_cols=84 Identities=19% Similarity=0.297 Sum_probs=61.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCC----HHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD----EKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|+++++++.....|+..++........|+++|+||+|+..... .++.... . ...+.+++++||++|.|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~-~----~~~~~~~~e~Sa~~g~~v 153 (170)
T cd04108 79 VFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL-A----AEMQAEYWSVSALSGENV 153 (170)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH-H----HHcCCeEEEEECCCCCCH
Confidence 579999999999999999887643334578999999999854322 1111111 1 122357899999999999
Q ss_pred HHHHHHHHHhhhh
Q psy2977 77 DITLQWLIAHSKS 89 (92)
Q Consensus 77 ~~~~~~l~~~i~~ 89 (92)
+++|++|++.+.+
T Consensus 154 ~~lf~~l~~~~~~ 166 (170)
T cd04108 154 REFFFRVAALTFE 166 (170)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 78
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.63 E-value=4e-15 Score=85.56 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=62.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ...++...... ..+..++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLSFIETSALDGTNVEE 155 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHH
Confidence 579999999999989988876643 235899999999999642 23334333322 2346799999999999999
Q ss_pred HHHHHHHhh
Q psy2977 79 TLQWLIAHS 87 (92)
Q Consensus 79 ~~~~l~~~i 87 (92)
+|+++.+.+
T Consensus 156 l~~~l~~~i 164 (165)
T cd01868 156 AFKQLLTEI 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
No 79
>PLN03108 Rab family protein; Provisional
Probab=99.63 E-value=4e-15 Score=89.14 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=64.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+|+.+..|+..+.... ....|+++++||+|+... .+.++..+... ..+++++++||++|.||++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEE 158 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 579999999999888888776542 257899999999999642 34444443321 2346799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|+|+++.+.+
T Consensus 159 ~f~~l~~~~~~ 169 (210)
T PLN03108 159 AFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHH
Confidence 99999988864
No 80
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.63 E-value=3e-15 Score=87.39 Aligned_cols=81 Identities=12% Similarity=0.195 Sum_probs=56.9
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccC------------CcCC-CceEEE
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLC------------AIQD-REICCY 66 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~------------~~~~-~~~~~~ 66 (92)
|+|++++++|+.+. .|+..+... ..++|+++|+||+|+.+.. ++.+.+... .... +.+.++
T Consensus 79 v~d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~---~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~ 153 (175)
T cd01874 79 CFSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDP---STIEKLAKNKQKPITPETGEKLARDLKAVKYV 153 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhCh---hhHHHhhhccCCCcCHHHHHHHHHHhCCcEEE
Confidence 58999999999986 477666543 2468999999999986421 111111100 0011 236899
Q ss_pred eeccccCCCHHHHHHHHHHh
Q psy2977 67 SISCKERDNIDITLQWLIAH 86 (92)
Q Consensus 67 ~~SA~~~~gi~~~~~~l~~~ 86 (92)
+|||++|.||+++|+.+++.
T Consensus 154 e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 154 ECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred EecCCCCCCHHHHHHHHHHH
Confidence 99999999999999999874
No 81
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.62 E-value=5.6e-15 Score=85.11 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=60.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++....|+..+.... ..++|+++|+||+|+.... ..++...... ......++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcEEEEEECCCCCCHHH
Confidence 589999999999889998886542 3578999999999996432 2233322211 11234689999999999999
Q ss_pred HHHHHHHhh
Q psy2977 79 TLQWLIAHS 87 (92)
Q Consensus 79 ~~~~l~~~i 87 (92)
+|+++++.+
T Consensus 157 ~~~~l~~~l 165 (165)
T cd01864 157 AFLLMATEL 165 (165)
T ss_pred HHHHHHHhC
Confidence 999998753
No 82
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.62 E-value=5.7e-15 Score=85.36 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=61.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCC---CCCCcEEEEeeCCCCCC-CCCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQ---LIGIPILVLGNKRDLPN-ALDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|++++++++....|..+++.... ..++|+++|+||+|+.. ....+++.+.... .....++++||++|.|+
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v 159 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETSAKDATNV 159 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEECCCCCCH
Confidence 4799999999998888887765322 24689999999999963 3344455444321 12247899999999999
Q ss_pred HHHHHHHHHhh
Q psy2977 77 DITLQWLIAHS 87 (92)
Q Consensus 77 ~~~~~~l~~~i 87 (92)
.++|+++++.+
T Consensus 160 ~~~~~~~~~~~ 170 (170)
T cd04116 160 AAAFEEAVRRV 170 (170)
T ss_pred HHHHHHHHhhC
Confidence 99999998753
No 83
>KOG0087|consensus
Probab=99.62 E-value=2.6e-15 Score=88.77 Aligned_cols=83 Identities=17% Similarity=0.257 Sum_probs=66.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|||+|.+.+|+.+..|+.++..+.+ .++++++|+||+||.. +.+.++.....+ ..+..++++||+.+.||++
T Consensus 93 VYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV~te~~k~~Ae-----~~~l~f~EtSAl~~tNVe~ 166 (222)
T KOG0087|consen 93 VYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAVPTEDGKAFAE-----KEGLFFLETSALDATNVEK 166 (222)
T ss_pred EEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccccchhhhHhHHH-----hcCceEEEecccccccHHH
Confidence 6899999999999999999998754 6899999999999964 334444333322 2356799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|..+...|.+
T Consensus 167 aF~~~l~~I~~ 177 (222)
T KOG0087|consen 167 AFERVLTEIYK 177 (222)
T ss_pred HHHHHHHHHHH
Confidence 99999888754
No 84
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.62 E-value=6.2e-15 Score=84.44 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=63.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC-CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN-ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++++++++....|+..+.......+.|+++|+||+|+.. ....++...... ..+++++++||++|+|++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-----KHNMLFIETSAKTRDGVQQA 153 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-----HcCCEEEEEecCCCCCHHHH
Confidence 579999999999888888877655556799999999999973 233444333321 23567999999999999999
Q ss_pred HHHHHHhh
Q psy2977 80 LQWLIAHS 87 (92)
Q Consensus 80 ~~~l~~~i 87 (92)
++++.+.+
T Consensus 154 ~~~~~~~~ 161 (161)
T cd01863 154 FEELVEKI 161 (161)
T ss_pred HHHHHHhC
Confidence 99998753
No 85
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.62 E-value=7.3e-15 Score=84.99 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=64.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++++.+..|+.++.... ..+.|+++|+||+|+... .+.++...... ..+..++++||++|+|+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAK-----EHGLIFMETSAKTASNVEE 156 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 589999999999999998886642 357999999999999632 33444433321 2346799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|.++.+.+.+
T Consensus 157 ~~~~~~~~~~~ 167 (168)
T cd01866 157 AFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 86
>KOG0079|consensus
Probab=99.62 E-value=1.6e-15 Score=85.74 Aligned_cols=82 Identities=17% Similarity=0.289 Sum_probs=66.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|||+++.++|.+.+.|++++.++ ....|-++|+||.|.++.. ..++..... ...++.+|++||+..+|++.
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A-----~~mgie~FETSaKe~~NvE~ 159 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTEDARAFA-----LQMGIELFETSAKENENVEA 159 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhc--CccccceecccCCCCccceeeehHHHHHHH-----HhcCchheehhhhhcccchH
Confidence 68999999999999999999876 3589999999999998642 223332221 24568899999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
.|..|.+++..
T Consensus 160 mF~cit~qvl~ 170 (198)
T KOG0079|consen 160 MFHCITKQVLQ 170 (198)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 87
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.62 E-value=5.2e-15 Score=84.75 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=60.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|+++++++.....|+..+... ..++|+++|+||+|+... .+.++...... ..+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAK-----RLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCCCCCHHH
Confidence 57999999999988888887543 357999999999998642 23333333221 2245799999999999999
Q ss_pred HHHHHHHh
Q psy2977 79 TLQWLIAH 86 (92)
Q Consensus 79 ~~~~l~~~ 86 (92)
+|++|+..
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99999865
No 88
>KOG0394|consensus
Probab=99.62 E-value=1.3e-15 Score=88.60 Aligned_cols=86 Identities=20% Similarity=0.281 Sum_probs=66.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCC---CCCcEEEEeeCCCCCCCC----CHHHHHHhhccCCcCCCceEEEeeccccC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQL---IGIPILVLGNKRDLPNAL----DEKELIDRMNLCAIQDREICCYSISCKER 73 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 73 (92)
|+|+.++++|+....|-++.+.+.+. ..-|++|+|||+|+.+.. +.....+.+. .++++++|++|||.+
T Consensus 88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~----s~gnipyfEtSAK~~ 163 (210)
T KOG0394|consen 88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK----SKGNIPYFETSAKEA 163 (210)
T ss_pred EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH----hcCCceeEEeccccc
Confidence 47999999999999999888764332 358999999999997532 2223333322 356899999999999
Q ss_pred CCHHHHHHHHHHhhhhc
Q psy2977 74 DNIDITLQWLIAHSKSH 90 (92)
Q Consensus 74 ~gi~~~~~~l~~~i~~~ 90 (92)
.||+++|+.+++.....
T Consensus 164 ~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 164 TNVDEAFEEIARRALAN 180 (210)
T ss_pred ccHHHHHHHHHHHHHhc
Confidence 99999999999877543
No 89
>KOG0088|consensus
Probab=99.61 E-value=1.3e-15 Score=86.97 Aligned_cols=83 Identities=22% Similarity=0.217 Sum_probs=64.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|||++|+++|+.++.|..++....+ ..+.++||+||+||... .+.++...+.. .-+..++++||+.+.||.+
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~Vt~qeAe~YAe-----svGA~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQVTRQEAEAYAE-----SVGALYMETSAKDNVGISE 165 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhhhHHHHHHHHH-----hhchhheecccccccCHHH
Confidence 6899999999999999999876533 56889999999999642 23334333321 2345689999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|+.|...+.+
T Consensus 166 lFe~Lt~~MiE 176 (218)
T KOG0088|consen 166 LFESLTAKMIE 176 (218)
T ss_pred HHHHHHHHHHH
Confidence 99999877654
No 90
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.61 E-value=4.3e-15 Score=85.46 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=61.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.++.....|+..+.+. ..++|+++|+||+|+.... ..+.... . ...+++++++||++|.|++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~~~-~----~~~~~~~~~~Sa~~~~gv~~l~ 150 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKFNF-A----EKHNLPLYYVSAADGTNVVKLF 150 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHHHH-H----HHcCCeEEEEeCCCCCCHHHHH
Confidence 58999999999888898887653 2468999999999985321 1111111 1 1234679999999999999999
Q ss_pred HHHHHhhhhc
Q psy2977 81 QWLIAHSKSH 90 (92)
Q Consensus 81 ~~l~~~i~~~ 90 (92)
+.+.+.+.+.
T Consensus 151 ~~l~~~~~~~ 160 (161)
T cd04124 151 QDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHhc
Confidence 9999887654
No 91
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.61 E-value=8.4e-15 Score=86.12 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=63.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|||++++++|..+..|+.++.... ....|+++++||+|+.+.. +.++..... ...+++++++||++|.|+++
T Consensus 79 v~d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa~~~~~i~~ 152 (188)
T cd04125 79 VYDVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC-----DSLNIPFFETSAKQSINVEE 152 (188)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHH
Confidence 589999999999999988876532 2458999999999997432 223322221 12245799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.++
T Consensus 153 ~f~~l~~~~~~~ 164 (188)
T cd04125 153 AFILLVKLIIKR 164 (188)
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 92
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.61 E-value=3.6e-15 Score=86.45 Aligned_cols=83 Identities=14% Similarity=0.225 Sum_probs=63.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeecccc---CCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKE---RDN 75 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~---~~g 75 (92)
|+|++++.++.....|+..+.......++|+++|+||+|+.... +.++... +. ....+++++|||++ +.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~~~~~ 156 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQR-FA----DAHSMPLFETSAKDPSENDH 156 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHH-HH----HHcCCcEEEEeccCCcCCCC
Confidence 58999999999999998887765434679999999999986432 2222222 21 12346799999999 999
Q ss_pred HHHHHHHHHHhhh
Q psy2977 76 IDITLQWLIAHSK 88 (92)
Q Consensus 76 i~~~~~~l~~~i~ 88 (92)
|+++|.+|++.++
T Consensus 157 i~~~f~~l~~~~~ 169 (170)
T cd04115 157 VEAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998774
No 93
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.61 E-value=8.1e-15 Score=84.94 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=58.7
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHHhhccCCcCCCc-eE
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNAL--------------DEKELIDRMNLCAIQDRE-IC 64 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~-~~ 64 (92)
|+|++++++|+... .|+..+... ..++|+++|+||+|+.... +.++..+.. ...+ ..
T Consensus 76 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~ 148 (174)
T smart00174 76 CFSVDSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALA-----KRIGAVK 148 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHH-----HHcCCcE
Confidence 57999999999886 477777653 2579999999999996421 111111111 1122 37
Q ss_pred EEeeccccCCCHHHHHHHHHHhhh
Q psy2977 65 CYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 65 ~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
+++|||++|.||+++|+.+.+.+.
T Consensus 149 ~~e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 149 YLECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhc
Confidence 899999999999999999998764
No 94
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.61 E-value=1.1e-14 Score=83.40 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=63.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|+++++++..+..|+..+..... .+.|+++++||+|+... .+.++...... ..+..++++||++|.|+++
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFETSAKTGENVNE 153 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHH
Confidence 5799999999999999998876543 67999999999998732 23444333322 2236799999999999999
Q ss_pred HHHHHHHhh
Q psy2977 79 TLQWLIAHS 87 (92)
Q Consensus 79 ~~~~l~~~i 87 (92)
+|++|.+.+
T Consensus 154 l~~~l~~~l 162 (163)
T cd01860 154 LFTEIAKKL 162 (163)
T ss_pred HHHHHHHHh
Confidence 999999875
No 95
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.61 E-value=9.6e-15 Score=85.15 Aligned_cols=85 Identities=16% Similarity=0.279 Sum_probs=64.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|+++..+++.+..|+..+++.....+.|+++|+||+|+.. .....+...... ....+++++||++|.|+.+
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~ 153 (180)
T cd04137 79 VYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-----SWGAAFLESSARENENVEE 153 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHH
Confidence 579999999999988888887754446789999999999863 223333322221 2236789999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|.||.+.+.+.
T Consensus 154 l~~~l~~~~~~~ 165 (180)
T cd04137 154 AFELLIEEIEKV 165 (180)
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 96
>KOG0395|consensus
Probab=99.60 E-value=9.7e-15 Score=86.79 Aligned_cols=84 Identities=19% Similarity=0.232 Sum_probs=67.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
||+++|+.+|+.+..+...++.......+|+++|+||+|+.. ..+.++..... ....+.++++||+.+.+|++
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la-----~~~~~~f~E~Sak~~~~v~~ 155 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALA-----RSWGCAFIETSAKLNYNVDE 155 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHH-----HhcCCcEEEeeccCCcCHHH
Confidence 689999999999998888886665656799999999999975 33444433321 23456799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|..|.+.+..
T Consensus 156 ~F~~L~r~~~~ 166 (196)
T KOG0395|consen 156 VFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 97
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.60 E-value=1.3e-14 Score=83.19 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=61.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++..+..|+..+.... ..++|+++++||+|+... .+.++...... ..++.++++||++|.|+++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 79 VYDITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTGENVEE 152 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHH
Confidence 589999999999988888765432 357899999999999642 23344433322 2347899999999999999
Q ss_pred HHHHHHHhh
Q psy2977 79 TLQWLIAHS 87 (92)
Q Consensus 79 ~~~~l~~~i 87 (92)
+|+++++.+
T Consensus 153 ~~~~~~~~~ 161 (161)
T cd04113 153 AFLKCARSI 161 (161)
T ss_pred HHHHHHHhC
Confidence 999998764
No 98
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.60 E-value=1.1e-14 Score=83.94 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=60.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCC-CCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccC-CCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQ-LIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKER-DNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~-~gi 76 (92)
|+|++++++|+.+..|+..+..... ..+.|+++|+||+|+... .+.++..... ...+.+++++||++| .||
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~~v 152 (165)
T cd04146 78 VYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLA-----SELGCLFFEVSAAEDYDGV 152 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHH-----HHcCCEEEEeCCCCCchhH
Confidence 5899999999988888776654321 347999999999998532 2333322221 122367999999999 599
Q ss_pred HHHHHHHHHhhh
Q psy2977 77 DITLQWLIAHSK 88 (92)
Q Consensus 77 ~~~~~~l~~~i~ 88 (92)
+++|++|++.+.
T Consensus 153 ~~~f~~l~~~~~ 164 (165)
T cd04146 153 HSVFHELCREVR 164 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 99
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.59 E-value=8.5e-15 Score=84.08 Aligned_cols=80 Identities=14% Similarity=0.198 Sum_probs=60.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+.. ...+... +. ...+.+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 82 VYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQA-FA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHH-HH----HHcCCeEEEEeCCCCCChHH
Confidence 589999999998888988876542 468999999999996432 2222211 11 12245789999999999999
Q ss_pred HHHHHHHhh
Q psy2977 79 TLQWLIAHS 87 (92)
Q Consensus 79 ~~~~l~~~i 87 (92)
+|++|++.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999999875
No 100
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.59 E-value=1.1e-14 Score=85.49 Aligned_cols=83 Identities=14% Similarity=0.174 Sum_probs=60.5
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCC------CHHHHHHhhccCCcCCCce-EEEeecccc
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNAL------DEKELIDRMNLCAIQDREI-CCYSISCKE 72 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~SA~~ 72 (92)
|+|++++++|+.+. .|+..+... ..+.|+++|+||+|+.... ..++..+... ..+. +++++||++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~Sa~~ 151 (187)
T cd04132 79 CYAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK-----KQGAFAYLECSAKT 151 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH-----HcCCcEEEEccCCC
Confidence 58999999999886 477666543 2478999999999996432 2333322211 1233 789999999
Q ss_pred CCCHHHHHHHHHHhhhhc
Q psy2977 73 RDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 73 ~~gi~~~~~~l~~~i~~~ 90 (92)
|.||+++|.++.+.+...
T Consensus 152 ~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 152 MENVEEVFDTAIEEALKK 169 (187)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999888653
No 101
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.59 E-value=1.8e-14 Score=82.18 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=61.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++++....|+.++..... .++|+++++||+|+.... ..+++.+... ..+..++++||++|.|+++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~gi~~ 152 (162)
T cd04123 79 VYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK-----SVGAKHFETSAKTGKGIEE 152 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 5799999999888888877765422 378999999999997432 3334433321 2346789999999999999
Q ss_pred HHHHHHHhh
Q psy2977 79 TLQWLIAHS 87 (92)
Q Consensus 79 ~~~~l~~~i 87 (92)
+|+||.+.+
T Consensus 153 ~~~~l~~~~ 161 (162)
T cd04123 153 LFLSLAKRM 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998865
No 102
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.59 E-value=1.7e-14 Score=83.44 Aligned_cols=84 Identities=17% Similarity=0.244 Sum_probs=61.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++++....|...+.......+.|+++++||+|+.+.. ..++...... .....+++++||++|.|+++
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~~i~~ 154 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ----QWGNVPFYETSARKRTNVDE 154 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH----HcCCceEEEeeCCCCCCHHH
Confidence 57899999999988888777654344579999999999996432 2222222111 11125799999999999999
Q ss_pred HHHHHHHhhh
Q psy2977 79 TLQWLIAHSK 88 (92)
Q Consensus 79 ~~~~l~~~i~ 88 (92)
+|++++.++.
T Consensus 155 ~f~~i~~~~~ 164 (168)
T cd04177 155 VFIDLVRQII 164 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 103
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.59 E-value=1.9e-14 Score=82.45 Aligned_cols=83 Identities=20% Similarity=0.306 Sum_probs=64.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++.+..|+..+..... .++|+++++||+|+... ...+....... ..+++++++||++|.|+++
T Consensus 79 v~d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~ 152 (164)
T smart00175 79 VYDITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAE-----EHGLPFFETSAKTNTNVEE 152 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHH
Confidence 5899999999998889888776532 57999999999998652 23344433321 2346799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|+++.+.+.+
T Consensus 153 l~~~i~~~~~~ 163 (164)
T smart00175 153 AFEELAREILK 163 (164)
T ss_pred HHHHHHHHHhh
Confidence 99999998754
No 104
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.59 E-value=1.8e-14 Score=85.47 Aligned_cols=84 Identities=19% Similarity=0.280 Sum_probs=62.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC---CCHHHHHHhhccCCcCCCceEEEeeccccCCCHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA---LDEKELIDRMNLCAIQDREICCYSISCKERDNID 77 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 77 (92)
|+|++++.+++.+..|+..+.......++|+++|+||+|+... ....+..+... ...+..++++||++|.|++
T Consensus 77 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~ 152 (198)
T cd04147 77 VYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVL 152 (198)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHH
Confidence 5899999999999888888776544457999999999999642 12222222111 1123568999999999999
Q ss_pred HHHHHHHHhhh
Q psy2977 78 ITLQWLIAHSK 88 (92)
Q Consensus 78 ~~~~~l~~~i~ 88 (92)
++|+||.+.+.
T Consensus 153 ~l~~~l~~~~~ 163 (198)
T cd04147 153 EVFKELLRQAN 163 (198)
T ss_pred HHHHHHHHHhh
Confidence 99999998765
No 105
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.58 E-value=2.7e-14 Score=82.38 Aligned_cols=86 Identities=19% Similarity=0.282 Sum_probs=63.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCC---CCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQ---LIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDN 75 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 75 (92)
|+|++++++++....|...++.... ..++|+++|+||+|+.. ..+.+++..... .....+++++||++|.|
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~g 154 (172)
T cd01862 79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNGNIPYFETSAKEAIN 154 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----HcCCceEEEEECCCCCC
Confidence 5799999999888778776654322 23699999999999973 334444444332 11236799999999999
Q ss_pred HHHHHHHHHHhhhhc
Q psy2977 76 IDITLQWLIAHSKSH 90 (92)
Q Consensus 76 i~~~~~~l~~~i~~~ 90 (92)
++++|+++.+.+.+.
T Consensus 155 v~~l~~~i~~~~~~~ 169 (172)
T cd01862 155 VEQAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887654
No 106
>KOG0091|consensus
Probab=99.58 E-value=2.9e-15 Score=85.88 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=64.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCC-CCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLI-GIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNID 77 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~-~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 77 (92)
|+|+||+++|+.+..|+.+..-+...+ .+-+++|+.|+||.. +.+.++.... + ..++..++++||++|.||+
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEkl-A----a~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKL-A----ASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHH-H----HhcCceEEEecccCCCcHH
Confidence 589999999999999998865443333 355789999999964 2344443332 2 3567889999999999999
Q ss_pred HHHHHHHHhhhh
Q psy2977 78 ITLQWLIAHSKS 89 (92)
Q Consensus 78 ~~~~~l~~~i~~ 89 (92)
++|..|++.+..
T Consensus 163 EAF~mlaqeIf~ 174 (213)
T KOG0091|consen 163 EAFDMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 107
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.58 E-value=1.2e-14 Score=83.75 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=55.4
Q ss_pred CeeCCchhhH--HHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKL--EASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|+++..++ +....|+..+... ..+.|+++|+||+|+.......+..+.. ....+++++|||++|.|+++
T Consensus 86 v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 86 LFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEEEE-----ELEGEEVLKISTLTEEGVDE 158 (168)
T ss_pred EEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHHhh-----hhccCceEEEEecccCCHHH
Confidence 4688876543 4455666666432 2478999999999997543322222211 12356799999999999999
Q ss_pred HHHHHHHhh
Q psy2977 79 TLQWLIAHS 87 (92)
Q Consensus 79 ~~~~l~~~i 87 (92)
+|+||.+.+
T Consensus 159 l~~~l~~~~ 167 (168)
T cd01897 159 VKNKACELL 167 (168)
T ss_pred HHHHHHHHh
Confidence 999999876
No 108
>PLN03110 Rab GTPase; Provisional
Probab=99.58 E-value=1.5e-14 Score=87.06 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=63.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+|+.+..|+..+.... ..+.|+++|+||+|+.... +.++... +. ....++++++||++|.|+++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~-l~----~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQA-LA----EKEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHH-HH----HHcCCEEEEEeCCCCCCHHH
Confidence 589999999999989988876542 2478999999999986432 2233322 21 12357899999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|++.+.+
T Consensus 165 lf~~l~~~i~~ 175 (216)
T PLN03110 165 AFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 109
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.58 E-value=1.4e-14 Score=83.08 Aligned_cols=82 Identities=24% Similarity=0.378 Sum_probs=65.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|.+++++|+.+..|+..+..... .+.|++|++||.|+.+ ..+.++..+... ..+..++++||+++.||.+
T Consensus 78 ~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~~ 151 (162)
T PF00071_consen 78 VFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-----ELGVPYFEVSAKNGENVKE 151 (162)
T ss_dssp EEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH-----HTTSEEEEEBTTTTTTHHH
T ss_pred ccccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH-----HhCCEEEEEECCCCCCHHH
Confidence 5799999999999999998876533 4689999999999975 445555544332 2347899999999999999
Q ss_pred HHHHHHHhhh
Q psy2977 79 TLQWLIAHSK 88 (92)
Q Consensus 79 ~~~~l~~~i~ 88 (92)
+|..+.+.+.
T Consensus 152 ~f~~~i~~i~ 161 (162)
T PF00071_consen 152 IFQELIRKIL 161 (162)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998774
No 110
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.57 E-value=4.2e-14 Score=83.34 Aligned_cols=82 Identities=21% Similarity=0.185 Sum_probs=61.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC------CHHHHHHhhccCCcCCCceEEEeeccccCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL------DEKELIDRMNLCAIQDREICCYSISCKERD 74 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 74 (92)
|+|++++.+++....|+..+.... .+.|+++|+||+|+.... ...++.... ...+.+++++||++|.
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 152 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFA-----DEIKAQHFETSSKTGQ 152 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHH-----HHcCCeEEEEeCCCCC
Confidence 579999999998888888876542 468999999999985321 112222211 1224678999999999
Q ss_pred CHHHHHHHHHHhhhh
Q psy2977 75 NIDITLQWLIAHSKS 89 (92)
Q Consensus 75 gi~~~~~~l~~~i~~ 89 (92)
|++++|+++++.+.+
T Consensus 153 gv~~l~~~i~~~~~~ 167 (193)
T cd04118 153 NVDELFQKVAEDFVS 167 (193)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998854
No 111
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.56 E-value=2.9e-14 Score=81.59 Aligned_cols=81 Identities=14% Similarity=0.234 Sum_probs=61.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++|+....|+..+..... .+.|+++++||+|+... ...++..... ...+..++++||++|.|+++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 152 (161)
T cd01861 79 VYDITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA-----KELNAMFIETSAKAGHNVKE 152 (161)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH-----HHhCCEEEEEeCCCCCCHHH
Confidence 5799999999999899888765432 36999999999999532 2333333322 12347799999999999999
Q ss_pred HHHHHHHhh
Q psy2977 79 TLQWLIAHS 87 (92)
Q Consensus 79 ~~~~l~~~i 87 (92)
+|++|.+.+
T Consensus 153 l~~~i~~~l 161 (161)
T cd01861 153 LFRKIASAL 161 (161)
T ss_pred HHHHHHHhC
Confidence 999998753
No 112
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=9.8e-15 Score=92.77 Aligned_cols=85 Identities=21% Similarity=0.217 Sum_probs=61.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcC-CCCCCCcEEEEeeCCCCCCCCCHH--HHHHhhccCCcCCCceEEEeeccccCCCHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEK-PQLIGIPILVLGNKRDLPNALDEK--ELIDRMNLCAIQDREICCYSISCKERDNID 77 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 77 (92)
|+|++++++++....|..++... ..+.++|+++|+||+|+.+..... ...... ...++++++|||++++||+
T Consensus 243 ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~-----~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 243 LVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALEL-----AALGGPVFLISAVTGEGLD 317 (335)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHH-----HhcCCCEEEEEcCCCCCHH
Confidence 68999877788877777776543 224578999999999997543221 111111 1224679999999999999
Q ss_pred HHHHHHHHhhhhc
Q psy2977 78 ITLQWLIAHSKSH 90 (92)
Q Consensus 78 ~~~~~l~~~i~~~ 90 (92)
+++++|.+.+.+.
T Consensus 318 eL~~~L~~~l~~~ 330 (335)
T PRK12299 318 ELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
No 113
>PLN03118 Rab family protein; Provisional
Probab=99.54 E-value=1.5e-14 Score=86.58 Aligned_cols=84 Identities=13% Similarity=0.125 Sum_probs=59.2
Q ss_pred CeeCCchhhHHHHHHHH-HHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHH
Q psy2977 1 MVDAADTDKLEASRNEL-HALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNID 77 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~-~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 77 (92)
|+|++++++|..+..++ ..+.......+.|+++|+||+|+.... ..++..... ...+..++++||++|.|++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~-----~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALA-----KEHGCLFLECSAKTRENVE 166 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 58999999999887643 333222223468999999999996432 223332221 1234679999999999999
Q ss_pred HHHHHHHHhhhh
Q psy2977 78 ITLQWLIAHSKS 89 (92)
Q Consensus 78 ~~~~~l~~~i~~ 89 (92)
++|++|.+.+..
T Consensus 167 ~l~~~l~~~~~~ 178 (211)
T PLN03118 167 QCFEELALKIME 178 (211)
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 114
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.54 E-value=7e-14 Score=81.00 Aligned_cols=80 Identities=13% Similarity=0.166 Sum_probs=55.8
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCCC--------------HHHHHHhhccCCcCCCc-eE
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNALD--------------EKELIDRMNLCAIQDRE-IC 64 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~-~~ 64 (92)
|+|++++.+|+... .|+..+... ..+.|+++|+||+|+.+... .++..... ...+ ..
T Consensus 78 v~~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~ 150 (174)
T cd04135 78 CFSVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLA-----KEIGAHC 150 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHH-----HHcCCCE
Confidence 57899999998876 455555433 35799999999999864321 11111111 1112 36
Q ss_pred EEeeccccCCCHHHHHHHHHHhh
Q psy2977 65 CYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 65 ~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
+++|||++|.||+++|+.+++.+
T Consensus 151 ~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 151 YVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEEecCCcCCCHHHHHHHHHHHh
Confidence 89999999999999999998765
No 115
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.53 E-value=8.8e-14 Score=81.87 Aligned_cols=82 Identities=13% Similarity=0.108 Sum_probs=57.9
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCC------------CHHHHHHhhccCCcCCCc-eEEE
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNAL------------DEKELIDRMNLCAIQDRE-ICCY 66 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 66 (92)
++|++++++|+... .|+..+.... .+.|+++|+||+|+.... +.++..... ...+ ..+|
T Consensus 79 v~~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 151 (187)
T cd04129 79 GFAVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVA-----KEIGAKKYM 151 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHH-----HHhCCcEEE
Confidence 47889999999886 5777776432 469999999999985311 111111111 1122 4799
Q ss_pred eeccccCCCHHHHHHHHHHhhhh
Q psy2977 67 SISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 67 ~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
+|||++|.||+++|+++++.+..
T Consensus 152 e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 152 ECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999987754
No 116
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.53 E-value=8.9e-14 Score=79.20 Aligned_cols=82 Identities=22% Similarity=0.283 Sum_probs=61.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|+++++++.....|+..+.........|+++++||+|+... .+.+++..... ..+.+++++||++|.|+++
T Consensus 77 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~ 151 (160)
T cd00876 77 VYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDE 151 (160)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHH
Confidence 5799999999988888887776533357999999999999752 23333333321 2236799999999999999
Q ss_pred HHHHHHHhh
Q psy2977 79 TLQWLIAHS 87 (92)
Q Consensus 79 ~~~~l~~~i 87 (92)
+|++|.+.+
T Consensus 152 l~~~l~~~i 160 (160)
T cd00876 152 VFKLLVREI 160 (160)
T ss_pred HHHHHHhhC
Confidence 999998764
No 117
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=1.1e-13 Score=80.42 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=57.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC-----CHHHHHHhhccCCcCCCceEEEeeccccCCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL-----DEKELIDRMNLCAIQDREICCYSISCKERDN 75 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 75 (92)
|+|++++++++.+..|+..+.. ..++|+++|+||+|+.+.. ..+++.+.++. ..++++||++|.|
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~ 153 (169)
T cd01892 84 VYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL-------PPPLHFSSKLGDS 153 (169)
T ss_pred EEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCC-------CCCEEEEeccCcc
Confidence 5899999999988787776532 2368999999999996432 11233332211 1358999999999
Q ss_pred HHHHHHHHHHhhh
Q psy2977 76 IDITLQWLIAHSK 88 (92)
Q Consensus 76 i~~~~~~l~~~i~ 88 (92)
++++|+.|++.+.
T Consensus 154 v~~lf~~l~~~~~ 166 (169)
T cd01892 154 SNELFTKLATAAQ 166 (169)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998775
No 118
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.53 E-value=1.2e-13 Score=83.49 Aligned_cols=82 Identities=11% Similarity=0.085 Sum_probs=56.6
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHHhhccCCcCCCc-eE
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNAL--------------DEKELIDRMNLCAIQDRE-IC 64 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~-~~ 64 (92)
|||++++++|+.+. .|...+... ..+.|++||+||+||.... +.++..... ...+ ..
T Consensus 79 vfdis~~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a-----k~~~~~~ 151 (222)
T cd04173 79 CFDISRPETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA-----KQVGAVS 151 (222)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH-----HHcCCCE
Confidence 68999999999985 455544332 3579999999999996421 111111110 1223 47
Q ss_pred EEeeccccCCC-HHHHHHHHHHhhhh
Q psy2977 65 CYSISCKERDN-IDITLQWLIAHSKS 89 (92)
Q Consensus 65 ~~~~SA~~~~g-i~~~~~~l~~~i~~ 89 (92)
+++|||++++| |+++|.........
T Consensus 152 y~E~SAk~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 152 YVECSSRSSERSVRDVFHVATVASLG 177 (222)
T ss_pred EEEcCCCcCCcCHHHHHHHHHHHHHh
Confidence 99999999985 99999998886543
No 119
>KOG0093|consensus
Probab=99.53 E-value=4.2e-15 Score=83.94 Aligned_cols=84 Identities=13% Similarity=0.186 Sum_probs=64.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
++|++|.++|..+..|.-.+... .-.+.|+++|+||+|+.++. +.+...... ...++.+|++||+.+.||++
T Consensus 100 myDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~-----~~LGfefFEtSaK~NinVk~ 173 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLA-----DQLGFEFFETSAKENINVKQ 173 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHH-----HHhChHHhhhcccccccHHH
Confidence 58999999999999998887654 34689999999999997542 223222211 12346799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|+.|...|-++
T Consensus 174 ~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 174 VFERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHHHH
Confidence 999999887543
No 120
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.53 E-value=7.4e-14 Score=80.52 Aligned_cols=83 Identities=22% Similarity=0.201 Sum_probs=58.6
Q ss_pred CeeCCch-hhHHHHHHHHHHhhcCC-CCCCCcEEEEeeCCCCCCCCCHHH-HHHhhccCCcCCCceEEEeeccccCCCHH
Q psy2977 1 MVDAADT-DKLEASRNELHALIEKP-QLIGIPILVLGNKRDLPNALDEKE-LIDRMNLCAIQDREICCYSISCKERDNID 77 (92)
Q Consensus 1 v~D~s~~-~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 77 (92)
|+|++++ ++++....|.+.+.... ....+|+++|+||+|+.+.....+ +..... .....+++++||++|.|++
T Consensus 85 v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~ 160 (170)
T cd01898 85 VIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK----ELWGKPVFPISALTGEGLD 160 (170)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh----hCCCCCEEEEecCCCCCHH
Confidence 5799988 67877777777665432 234689999999999965433322 222221 1124668999999999999
Q ss_pred HHHHHHHHhh
Q psy2977 78 ITLQWLIAHS 87 (92)
Q Consensus 78 ~~~~~l~~~i 87 (92)
++|+++.+.+
T Consensus 161 ~l~~~i~~~~ 170 (170)
T cd01898 161 ELLRKLAELL 170 (170)
T ss_pred HHHHHHHhhC
Confidence 9999998753
No 121
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=3.7e-14 Score=81.90 Aligned_cols=84 Identities=21% Similarity=0.299 Sum_probs=57.6
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCH----HHHHHhhccCCcCCCceEEEeeccccCCC
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNALDE----KELIDRMNLCAIQDREICCYSISCKERDN 75 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 75 (92)
|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.... +++..... .. .....+++|||++|.|
T Consensus 77 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~-~~~~~~~e~Sa~~~~~ 151 (166)
T cd01893 77 VYSVDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMN--EF-REIETCVECSAKTLIN 151 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHHH--HH-hcccEEEEeccccccC
Confidence 57999999998875 4655554332 37899999999999754332 11211110 00 1113689999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy2977 76 IDITLQWLIAHSKS 89 (92)
Q Consensus 76 i~~~~~~l~~~i~~ 89 (92)
++++|+.+.+.+..
T Consensus 152 v~~lf~~~~~~~~~ 165 (166)
T cd01893 152 VSEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887653
No 122
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.51 E-value=1.7e-13 Score=77.62 Aligned_cols=79 Identities=24% Similarity=0.344 Sum_probs=61.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP--NALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++++.+..|+..+.... ..+.|+++++||+|+. .....+++.+... ..+.+++++||++|.|+++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 79 VYDITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEE 152 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHH
Confidence 579999989999888888887653 2579999999999994 3445555555432 2457899999999999999
Q ss_pred HHHHHHH
Q psy2977 79 TLQWLIA 85 (92)
Q Consensus 79 ~~~~l~~ 85 (92)
+|.+|.+
T Consensus 153 ~~~~i~~ 159 (159)
T cd00154 153 LFQSLAE 159 (159)
T ss_pred HHHHHhC
Confidence 9999863
No 123
>KOG0086|consensus
Probab=99.51 E-value=8.1e-14 Score=79.31 Aligned_cols=84 Identities=19% Similarity=0.160 Sum_probs=63.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD--EKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++|+....|+.....-. .+++.+++++||.||.+... ..+..+.. ......+.++||+||+||+|
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~lA-s~nIvviL~GnKkDL~~~R~VtflEAs~Fa-----qEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELMFLETSALTGENVEE 161 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHhhC-CCcEEEEEeCChhhcChhhhhhHHHHHhhh-----cccceeeeeecccccccHHH
Confidence 689999999999999998876532 36788999999999975433 22322222 23345789999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|-..++.|..+
T Consensus 162 aFl~c~~tIl~k 173 (214)
T KOG0086|consen 162 AFLKCARTILNK 173 (214)
T ss_pred HHHHHHHHHHHH
Confidence 999988887643
No 124
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.51 E-value=1.8e-13 Score=78.95 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=58.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE-KELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|+++..++.....|+..+.... ..+.|+++++||+|+.+.... .+....+. ......++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHHH
Confidence 579999889988878877664422 246899999999999643221 12222221 112367899999999999999
Q ss_pred HHHHHHhh
Q psy2977 80 LQWLIAHS 87 (92)
Q Consensus 80 ~~~l~~~i 87 (92)
|++|.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99999865
No 125
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.50 E-value=1.8e-13 Score=79.48 Aligned_cols=78 Identities=10% Similarity=0.129 Sum_probs=54.5
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHHhhccCCcCCCceEE
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNAL--------------DEKELIDRMNLCAIQDREICC 65 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 65 (92)
|+|++++.+|+... .|+..+... ..+.|+++++||+|+.... ..++...... ......+
T Consensus 78 v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~----~~~~~~~ 151 (173)
T cd04130 78 CFSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE----KIGACEY 151 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH----HhCCCeE
Confidence 57999999998875 577666543 2468999999999986421 1112211110 1122479
Q ss_pred EeeccccCCCHHHHHHHHH
Q psy2977 66 YSISCKERDNIDITLQWLI 84 (92)
Q Consensus 66 ~~~SA~~~~gi~~~~~~l~ 84 (92)
++|||++|.||+++|+.+.
T Consensus 152 ~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 152 IECSALTQKNLKEVFDTAI 170 (173)
T ss_pred EEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999875
No 126
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.50 E-value=2.7e-13 Score=78.63 Aligned_cols=85 Identities=19% Similarity=0.197 Sum_probs=55.8
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHhhccC---------CcCCCceEEEeec
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNALDE-KELIDRMNLC---------AIQDREICCYSIS 69 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~---------~~~~~~~~~~~~S 69 (92)
|+|++++++|+... .|+..+... ..+.|+++|+||+|+...... .++....... .......++++||
T Consensus 79 v~~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 156 (175)
T cd01870 79 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECS 156 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEec
Confidence 47899999988875 466665543 347899999999998643211 1111000000 0001234799999
Q ss_pred cccCCCHHHHHHHHHHhh
Q psy2977 70 CKERDNIDITLQWLIAHS 87 (92)
Q Consensus 70 A~~~~gi~~~~~~l~~~i 87 (92)
|++|.|++++|++|.+..
T Consensus 157 a~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 157 AKTKEGVREVFEMATRAA 174 (175)
T ss_pred cccCcCHHHHHHHHHHHh
Confidence 999999999999998764
No 127
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.50 E-value=8.6e-14 Score=88.33 Aligned_cols=83 Identities=23% Similarity=0.250 Sum_probs=57.6
Q ss_pred CeeCCch---hhHHHHHHHHHHhhcC-CCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADT---DKLEASRNELHALIEK-PQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~---~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|+++. ++++....|.+++... ....++|+++|+||+|+.+....+++.+.+. ...+.+++++||++++||
T Consensus 242 VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~vi~iSAktg~GI 317 (329)
T TIGR02729 242 LIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPVFPISALTGEGL 317 (329)
T ss_pred EEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcEEEEEccCCcCH
Confidence 5788876 5666666666655432 2245789999999999975433333333322 112357999999999999
Q ss_pred HHHHHHHHHhh
Q psy2977 77 DITLQWLIAHS 87 (92)
Q Consensus 77 ~~~~~~l~~~i 87 (92)
++++++|.+.+
T Consensus 318 ~eL~~~I~~~l 328 (329)
T TIGR02729 318 DELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 128
>KOG0074|consensus
Probab=99.48 E-value=2.5e-14 Score=80.36 Aligned_cols=88 Identities=25% Similarity=0.450 Sum_probs=80.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++|..+|++...++-+++....+..+|++|.+||+|+..+...+++...+.+..+..+.|++.+|||.+++|+.+..
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~ 171 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGS 171 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcc
Confidence 68999999999998899999988778889999999999998888899999988888888889999999999999999999
Q ss_pred HHHHHhhh
Q psy2977 81 QWLIAHSK 88 (92)
Q Consensus 81 ~~l~~~i~ 88 (92)
+|+.....
T Consensus 172 ~wv~sn~~ 179 (185)
T KOG0074|consen 172 DWVQSNPE 179 (185)
T ss_pred hhhhcCCC
Confidence 99987664
No 129
>KOG0080|consensus
Probab=99.47 E-value=2.3e-14 Score=82.05 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=67.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|||+|.+++|.....|++++-......++-.++|+||+|... ..+.++-.+. .+.+..-|+++||+|.+||+.
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kf-----Ar~h~~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKF-----ARKHRCLFIECSAKTRENVQC 164 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHH-----HHhhCcEEEEcchhhhccHHH
Confidence 689999999999989999987665556788899999999752 2334433222 245667799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
.|+.|+..|.+.
T Consensus 165 ~FeelveKIi~t 176 (209)
T KOG0080|consen 165 CFEELVEKIIET 176 (209)
T ss_pred HHHHHHHHHhcC
Confidence 999999988654
No 130
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.46 E-value=9.1e-13 Score=79.05 Aligned_cols=83 Identities=22% Similarity=0.334 Sum_probs=62.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++..+|..+..|+..+... ..+.|+++++||+|+.+.....+..... ...++.++++||++|.|+++.|
T Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 88 MFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKDRQVKARQITFH-----RKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCccccCCHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence 57999999999988888887654 2468999999999986432111211211 1234678999999999999999
Q ss_pred HHHHHhhhhc
Q psy2977 81 QWLIAHSKSH 90 (92)
Q Consensus 81 ~~l~~~i~~~ 90 (92)
.||++.+..+
T Consensus 161 ~~ia~~l~~~ 170 (215)
T PTZ00132 161 LWLARRLTND 170 (215)
T ss_pred HHHHHHHhhc
Confidence 9999988654
No 131
>KOG0083|consensus
Probab=99.45 E-value=1.2e-14 Score=81.05 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=63.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
++|+++..+|++...|+-++.... -..+.+.+++||+|+.. ....++-.... ...+++++++||+||.||+-
T Consensus 77 lydiankasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~kla-----~~y~ipfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 77 LYDIANKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHERAVKRDDGEKLA-----EAYGIPFMETSAKTGFNVDL 150 (192)
T ss_pred eeecccchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchhhccccchHHHHH-----HHHCCCceeccccccccHhH
Confidence 589999999999999998887542 23578899999999943 22222222211 23467899999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|..|++.+++.
T Consensus 151 af~~ia~~l~k~ 162 (192)
T KOG0083|consen 151 AFLAIAEELKKL 162 (192)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 132
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.45 E-value=6.6e-13 Score=76.53 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=55.1
Q ss_pred CeeCCchhhHHHHHH-HHHHhhcCCCCCCCcEEEEeeCCCCCCCCCH-------------HHHHHhhccCCcCCCc-eEE
Q psy2977 1 MVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDLPNALDE-------------KELIDRMNLCAIQDRE-ICC 65 (92)
Q Consensus 1 v~D~s~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-------------~~~~~~~~~~~~~~~~-~~~ 65 (92)
|+|++++.++..... |+..+... ..+.|+++|+||+|+...... ++..... ...+ ..+
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~ 150 (171)
T cd00157 78 CFSVDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLA-----KEIGAIGY 150 (171)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHH-----HHhCCeEE
Confidence 579999888887654 55555443 247999999999999754322 1112111 1122 379
Q ss_pred EeeccccCCCHHHHHHHHHH
Q psy2977 66 YSISCKERDNIDITLQWLIA 85 (92)
Q Consensus 66 ~~~SA~~~~gi~~~~~~l~~ 85 (92)
+++||++|+|++++|++|.+
T Consensus 151 ~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 151 MECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEeecCCCCCHHHHHHHHhh
Confidence 99999999999999999875
No 133
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.41 E-value=1.1e-12 Score=78.04 Aligned_cols=78 Identities=24% Similarity=0.234 Sum_probs=53.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.++.....|...+ ......++|+++|+||+|+.+.... .... .....+++++||++|.|+++++
T Consensus 127 v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~---~~~~-----~~~~~~~~~~Sa~~~~gi~~l~ 197 (204)
T cd01878 127 VVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEEL---EERL-----EAGRPDAVFISAKTGEGLDELL 197 (204)
T ss_pred EEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHH---HHHh-----hcCCCceEEEEcCCCCCHHHHH
Confidence 57888877776654444333 2223346899999999999643221 1111 2234679999999999999999
Q ss_pred HHHHHhh
Q psy2977 81 QWLIAHS 87 (92)
Q Consensus 81 ~~l~~~i 87 (92)
++|.+.+
T Consensus 198 ~~L~~~~ 204 (204)
T cd01878 198 EAIEELL 204 (204)
T ss_pred HHHHhhC
Confidence 9998764
No 134
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.40 E-value=1.1e-12 Score=80.47 Aligned_cols=77 Identities=19% Similarity=0.149 Sum_probs=55.2
Q ss_pred CeeCCchh-hHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHH-HHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK-ELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++. +++....|+..+.. .++|+++|+||+||.+..... +..+.+ ...++.++++||++|+|+++
T Consensus 43 V~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~~~g~~v~~~SAktg~gi~e 113 (245)
T TIGR00157 43 VSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----RNIGYQVLMTSSKNQDGLKE 113 (245)
T ss_pred EEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----HHCCCeEEEEecCCchhHHH
Confidence 57888877 78888888765532 468999999999996422211 122222 12356799999999999999
Q ss_pred HHHHHHHh
Q psy2977 79 TLQWLIAH 86 (92)
Q Consensus 79 ~~~~l~~~ 86 (92)
+|+.+.+.
T Consensus 114 Lf~~l~~~ 121 (245)
T TIGR00157 114 LIEALQNR 121 (245)
T ss_pred HHhhhcCC
Confidence 99988753
No 135
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.39 E-value=2.9e-12 Score=83.65 Aligned_cols=83 Identities=24% Similarity=0.296 Sum_probs=55.9
Q ss_pred CeeCCch---hhHHHHHHHHHHhhcC-CCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADT---DKLEASRNELHALIEK-PQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~---~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|+++. +.++....|.+++... ..+.++|++||+||+|++.. .+.+..... ...++++++||++++|+
T Consensus 243 VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~-----~l~~~i~~iSA~tgeGI 315 (424)
T PRK12297 243 VIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKE-----KLGPKVFPISALTGQGL 315 (424)
T ss_pred EEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHH-----HhCCcEEEEeCCCCCCH
Confidence 5788754 5566655555555442 23457999999999998532 222222111 11256899999999999
Q ss_pred HHHHHHHHHhhhhc
Q psy2977 77 DITLQWLIAHSKSH 90 (92)
Q Consensus 77 ~~~~~~l~~~i~~~ 90 (92)
++++++|.+.+.+.
T Consensus 316 ~eL~~~L~~~l~~~ 329 (424)
T PRK12297 316 DELLYAVAELLEET 329 (424)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999888653
No 136
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.38 E-value=1.6e-12 Score=75.12 Aligned_cols=84 Identities=24% Similarity=0.206 Sum_probs=55.5
Q ss_pred CeeCCch------hhHHHHHHHHHHhhcCCC------CCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEee
Q psy2977 1 MVDAADT------DKLEASRNELHALIEKPQ------LIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSI 68 (92)
Q Consensus 1 v~D~s~~------~~~~~~~~~~~~~~~~~~------~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (92)
|+|++++ .++.....|...+..... ..++|+++|+||+|+.......+..... ........++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRE---LALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHH---HhcCCCCCEEEE
Confidence 5688877 466666666666554322 2468999999999997433222221001 112234669999
Q ss_pred ccccCCCHHHHHHHHHHhh
Q psy2977 69 SCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 69 SA~~~~gi~~~~~~l~~~i 87 (92)
||++|.|++++++++...+
T Consensus 158 Sa~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 158 SAKTEEGLDELIRAIYELL 176 (176)
T ss_pred ehhhhcCHHHHHHHHHhhC
Confidence 9999999999999997653
No 137
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.35 E-value=6.8e-12 Score=72.94 Aligned_cols=78 Identities=23% Similarity=0.241 Sum_probs=50.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhccCCcCCCceEEEeeccccCCCHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE---KELIDRMNLCAIQDREICCYSISCKERDNID 77 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 77 (92)
|+|+++..+......|. .+.. .++|+++|+||+|+.+.... +++.+.++. ....++++||++|.|++
T Consensus 97 v~D~~~~~~~~~~~~~~-~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~gi~ 166 (179)
T cd01890 97 LVDATQGVEAQTLANFY-LALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGL-----DPSEAILVSAKTGLGVE 166 (179)
T ss_pred EEECCCCccHhhHHHHH-HHHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCC-----CcccEEEeeccCCCCHH
Confidence 57888765444433332 2222 35799999999999643221 223332221 12358999999999999
Q ss_pred HHHHHHHHhhh
Q psy2977 78 ITLQWLIAHSK 88 (92)
Q Consensus 78 ~~~~~l~~~i~ 88 (92)
++|++|.+.+.
T Consensus 167 ~l~~~l~~~~~ 177 (179)
T cd01890 167 DLLEAIVERIP 177 (179)
T ss_pred HHHHHHHhhCC
Confidence 99999998763
No 138
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.35 E-value=2.6e-12 Score=85.08 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=44.1
Q ss_pred CCCCcEEEEeeCCCCCCCCCHH-HHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhhc
Q psy2977 26 LIGIPILVLGNKRDLPNALDEK-ELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 26 ~~~~p~ilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
+.++|++||+||+|+++..... .+...+ ....++++++||++++|+++++.+|.+.+...
T Consensus 282 l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 282 LAERPRLVVLNKIDVPDARELAEFVRPEL-----EARGWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred hcCCCEEEEEECccchhhHHHHHHHHHHH-----HHcCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3578999999999997532221 222222 12357899999999999999999999988653
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.34 E-value=2.5e-12 Score=72.42 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=47.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++++.++.. ..|.. .. ..|+++|+||+|+.+. ...++..+.... ....+++++||++|.|++++
T Consensus 69 v~d~~~~~s~~~-~~~~~-~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l 136 (142)
T TIGR02528 69 VQSATDPESRFP-PGFAS-IF------VKPVIGLVTKIDLAEADVDIERAKELLET----AGAEPIFEISSVDEQGLEAL 136 (142)
T ss_pred EecCCCCCcCCC-hhHHH-hc------cCCeEEEEEeeccCCcccCHHHHHHHHHH----cCCCcEEEEecCCCCCHHHH
Confidence 578888877644 23322 21 2499999999999642 223333332211 11236899999999999999
Q ss_pred HHHHH
Q psy2977 80 LQWLI 84 (92)
Q Consensus 80 ~~~l~ 84 (92)
|++|+
T Consensus 137 ~~~l~ 141 (142)
T TIGR02528 137 VDYLN 141 (142)
T ss_pred HHHHh
Confidence 99985
No 140
>KOG0077|consensus
Probab=99.32 E-value=2.8e-12 Score=73.75 Aligned_cols=87 Identities=31% Similarity=0.477 Sum_probs=73.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCC------------cCCCceEEEee
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCA------------IQDREICCYSI 68 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 68 (92)
++|+.|.++|.+++.+++.++....+.+.|+++++||+|.+.+.+.++....+++.. ...++..+|.|
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc 173 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC 173 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence 378999999999999999999877778999999999999999888887777665422 12346789999
Q ss_pred ccccCCCHHHHHHHHHHhh
Q psy2977 69 SCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 69 SA~~~~gi~~~~~~l~~~i 87 (92)
|...+.|.-+.|.|+...+
T Consensus 174 si~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 174 SIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEccCccceeeeehhhhc
Confidence 9999999999999998765
No 141
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.31 E-value=1.2e-11 Score=81.77 Aligned_cols=84 Identities=21% Similarity=0.132 Sum_probs=54.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++..++... .++..+.. .++|+++|+||+|+.+......+...+..........+++++||++|.||+++|
T Consensus 300 V~Da~~~~s~~~~-~~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf 374 (472)
T PRK03003 300 LIDASEPISEQDQ-RVLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLV 374 (472)
T ss_pred EEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHH
Confidence 5788877666554 34444432 368999999999997432222222221110001123568999999999999999
Q ss_pred HHHHHhhhh
Q psy2977 81 QWLIAHSKS 89 (92)
Q Consensus 81 ~~l~~~i~~ 89 (92)
+.+.+.+..
T Consensus 375 ~~i~~~~~~ 383 (472)
T PRK03003 375 PALETALES 383 (472)
T ss_pred HHHHHHHHH
Confidence 999988754
No 142
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.29 E-value=1.3e-11 Score=79.08 Aligned_cols=77 Identities=23% Similarity=0.244 Sum_probs=51.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.++.....|. .++......++|+++|+||+|+.+. .++.... ....+++++||++|.|+++++
T Consensus 275 VvD~s~~~~~~~~~~~~-~~L~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~------~~~~~~i~iSAktg~GI~eL~ 344 (351)
T TIGR03156 275 VVDASDPDREEQIEAVE-KVLEELGAEDIPQLLVYNKIDLLDE---PRIERLE------EGYPEAVFVSAKTGEGLDLLL 344 (351)
T ss_pred EEECCCCchHHHHHHHH-HHHHHhccCCCCEEEEEEeecCCCh---HhHHHHH------hCCCCEEEEEccCCCCHHHHH
Confidence 68999887766554333 3333223347899999999999642 2222211 112357999999999999999
Q ss_pred HHHHHhh
Q psy2977 81 QWLIAHS 87 (92)
Q Consensus 81 ~~l~~~i 87 (92)
++|.+.+
T Consensus 345 ~~I~~~~ 351 (351)
T TIGR03156 345 EAIAERL 351 (351)
T ss_pred HHHHhhC
Confidence 9998753
No 143
>PRK04213 GTP-binding protein; Provisional
Probab=99.28 E-value=1.3e-11 Score=73.28 Aligned_cols=64 Identities=22% Similarity=0.206 Sum_probs=43.9
Q ss_pred CCCcEEEEeeCCCCCCCC--CHHHHHHhhccCC-cCCCceEEEeeccccCCCHHHHHHHHHHhhhhcC
Q psy2977 27 IGIPILVLGNKRDLPNAL--DEKELIDRMNLCA-IQDREICCYSISCKERDNIDITLQWLIAHSKSHT 91 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~~~ 91 (92)
.++|+++|+||+|+.+.. ..+++.+.++... ......+++++||++| ||+++|+||.+.+.+..
T Consensus 129 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred cCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 368999999999996432 1233444443210 0011125899999999 99999999999887644
No 144
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.27 E-value=1.8e-11 Score=70.56 Aligned_cols=78 Identities=14% Similarity=0.174 Sum_probs=52.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++..++. ..|+..+. .++|+++++||+|+++. ..+.+.+.+... ....+++++||++|+|++++|
T Consensus 71 v~d~~~~~s~~--~~~~~~~~-----~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~---~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 71 VHGANDPESRL--PAGLLDIG-----VSKRQIAVISKTDMPDA-DVAATRKLLLET---GFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred EEeCCCccccc--CHHHHhcc-----CCCCeEEEEEccccCcc-cHHHHHHHHHHc---CCCCCEEEEECCCccCHHHHH
Confidence 46887765542 23444431 35799999999999653 334444332211 112479999999999999999
Q ss_pred HHHHHhhhh
Q psy2977 81 QWLIAHSKS 89 (92)
Q Consensus 81 ~~l~~~i~~ 89 (92)
+++.+.+..
T Consensus 140 ~~l~~~~~~ 148 (158)
T PRK15467 140 DYLASLTKQ 148 (158)
T ss_pred HHHHHhchh
Confidence 999988754
No 145
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.26 E-value=2.5e-11 Score=79.26 Aligned_cols=84 Identities=15% Similarity=0.079 Sum_probs=52.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCC-CCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP-NALDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|+++..+.... .++..+.. .++|+++|+||+|+. +....+++...+..........+++++||++|.|++++
T Consensus 261 V~D~~~~~~~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l 335 (429)
T TIGR03594 261 VLDATEGITEQDL-RIAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKL 335 (429)
T ss_pred EEECCCCccHHHH-HHHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHH
Confidence 5677765544332 23333332 358999999999997 22222333333321110112467999999999999999
Q ss_pred HHHHHHhhhh
Q psy2977 80 LQWLIAHSKS 89 (92)
Q Consensus 80 ~~~l~~~i~~ 89 (92)
|+++.+....
T Consensus 336 ~~~i~~~~~~ 345 (429)
T TIGR03594 336 LDAIDEVYEN 345 (429)
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 146
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.25 E-value=6.4e-11 Score=65.94 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=55.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHH--HhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELI--DRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++.....|+...........+|+++++||+|+.......... .... .....+++++||.++.|+++
T Consensus 75 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 75 VYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA----KELGVPYFETSAKTGENVEE 150 (157)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH----hhcCCcEEEEecCCCCChHH
Confidence 57888888877776663333333334679999999999997543333221 1111 22357799999999999999
Q ss_pred HHHHHHH
Q psy2977 79 TLQWLIA 85 (92)
Q Consensus 79 ~~~~l~~ 85 (92)
+++||.+
T Consensus 151 ~~~~l~~ 157 (157)
T cd00882 151 LFEELAE 157 (157)
T ss_pred HHHHHhC
Confidence 9999863
No 147
>KOG0097|consensus
Probab=99.23 E-value=9.9e-11 Score=66.12 Aligned_cols=84 Identities=14% Similarity=0.120 Sum_probs=63.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++.+..++....|+....+- ..++..+++++||.||... .+.++.++..+ ..+..+.++||+||+||++
T Consensus 90 vyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~fae-----engl~fle~saktg~nved 163 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFAE-----ENGLMFLEASAKTGQNVED 163 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHHh-----hcCeEEEEecccccCcHHH
Confidence 57999888899888999877543 2256778999999999653 34455544332 3457799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|-.-++.+.++
T Consensus 164 afle~akkiyqn 175 (215)
T KOG0097|consen 164 AFLETAKKIYQN 175 (215)
T ss_pred HHHHHHHHHHHh
Confidence 998888777543
No 148
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.23 E-value=4.3e-11 Score=68.07 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=48.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++++.. ..++..+.. .++|+++|+||+|+.+........+.+. ...+.+++++||++|.|+++++
T Consensus 81 v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCeEEEEccCCCCHHHHH
Confidence 4677664332 234444432 2589999999999965422211111111 1123578999999999999999
Q ss_pred HHHHHhhh
Q psy2977 81 QWLIAHSK 88 (92)
Q Consensus 81 ~~l~~~i~ 88 (92)
++|.+.+.
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988653
No 149
>PRK11058 GTPase HflX; Provisional
Probab=99.21 E-value=1.2e-10 Score=76.28 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=51.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++..+.....| .+++......++|+++|+||+|+..... ..+... . ... ..++.+||++|.|+++++
T Consensus 283 VvDaS~~~~~e~l~~v-~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~~-~----~~~-~~~v~ISAktG~GIdeL~ 354 (426)
T PRK11058 283 VVDAADVRVQENIEAV-NTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDRD-E----ENK-PIRVWLSAQTGAGIPLLF 354 (426)
T ss_pred EEeCCCccHHHHHHHH-HHHHHHhccCCCCEEEEEEcccCCCchh-HHHHHH-h----cCC-CceEEEeCCCCCCHHHHH
Confidence 6899988766654322 2222222224689999999999964211 111111 0 011 125789999999999999
Q ss_pred HHHHHhhhh
Q psy2977 81 QWLIAHSKS 89 (92)
Q Consensus 81 ~~l~~~i~~ 89 (92)
++|.+.+..
T Consensus 355 e~I~~~l~~ 363 (426)
T PRK11058 355 QALTERLSG 363 (426)
T ss_pred HHHHHHhhh
Confidence 999998753
No 150
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.20 E-value=1.2e-10 Score=66.84 Aligned_cols=61 Identities=23% Similarity=0.284 Sum_probs=41.6
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhh---ccCC--cCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRM---NLCA--IQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.++|+++|+||+|+.... .+.+...+ .... .....++++++||++|+|++++++||.+...
T Consensus 101 ~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 101 ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 358999999999987432 22222211 1110 0123467999999999999999999998764
No 151
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.20 E-value=8.6e-11 Score=76.23 Aligned_cols=87 Identities=22% Similarity=0.200 Sum_probs=55.6
Q ss_pred CeeCC---chhhHHHHHHHHHHhhcC-CCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAA---DTDKLEASRNELHALIEK-PQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s---~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|++ +.+.++....|++++... ..+.++|+++|+||+|+.......+....+. ........++++||+++.|+
T Consensus 244 VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~--~~~~~~~~Vi~ISA~tg~GI 321 (390)
T PRK12298 244 LIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIV--EALGWEGPVYLISAASGLGV 321 (390)
T ss_pred EeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHH--HHhCCCCCEEEEECCCCcCH
Confidence 46776 345566666666665542 2235689999999999964322222111111 00011135899999999999
Q ss_pred HHHHHHHHHhhhh
Q psy2977 77 DITLQWLIAHSKS 89 (92)
Q Consensus 77 ~~~~~~l~~~i~~ 89 (92)
++++++|.+.+.+
T Consensus 322 deLl~~I~~~L~~ 334 (390)
T PRK12298 322 KELCWDLMTFIEE 334 (390)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998864
No 152
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.19 E-value=7.4e-11 Score=73.18 Aligned_cols=79 Identities=15% Similarity=0.064 Sum_probs=49.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHH-HHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK-ELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|+++..+.. .++...+.. .+.|+++|+||+|+....... ........ .....++++||++|.|++++
T Consensus 86 VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~v~~iSA~~g~gi~~L 155 (270)
T TIGR00436 86 VVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL----EDFKDIVPISALTGDNTSFL 155 (270)
T ss_pred EEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh----cCCCceEEEecCCCCCHHHH
Confidence 46887765543 223333322 358999999999996321111 11111111 11226899999999999999
Q ss_pred HHHHHHhhhh
Q psy2977 80 LQWLIAHSKS 89 (92)
Q Consensus 80 ~~~l~~~i~~ 89 (92)
+++|.+.+..
T Consensus 156 ~~~l~~~l~~ 165 (270)
T TIGR00436 156 AAFIEVHLPE 165 (270)
T ss_pred HHHHHHhCCC
Confidence 9999988754
No 153
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.19 E-value=6.9e-11 Score=70.55 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=40.6
Q ss_pred CcEEEEeeCCCCCCCCCH----HHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 29 IPILVLGNKRDLPNALDE----KELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
.|+++|+||+|+.+.... +++.+.+.. .....++++++||++|+|++++|++|.+.+..
T Consensus 138 ~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~--~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 138 KHIIIVQNKIDLVKEEQALENYEQIKKFVKG--TIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred CcEEEEEEchhccCHHHHHHHHHHHHHHHhc--cccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 578999999999642221 122222211 01124679999999999999999999988754
No 154
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.19 E-value=6.3e-11 Score=78.07 Aligned_cols=71 Identities=24% Similarity=0.267 Sum_probs=50.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.+++.... +.. ..++|+++|+||+|+.+..... .....+++++||++|.|+++++
T Consensus 301 VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAktg~GI~~L~ 362 (449)
T PRK05291 301 VLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKTGEGIDELR 362 (449)
T ss_pred EecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeCCCCHHHHH
Confidence 578888766654322 222 2468999999999997432211 1123568999999999999999
Q ss_pred HHHHHhhhh
Q psy2977 81 QWLIAHSKS 89 (92)
Q Consensus 81 ~~l~~~i~~ 89 (92)
++|.+.+..
T Consensus 363 ~~L~~~l~~ 371 (449)
T PRK05291 363 EAIKELAFG 371 (449)
T ss_pred HHHHHHHhh
Confidence 999988753
No 155
>PRK15494 era GTPase Era; Provisional
Probab=99.18 E-value=1.2e-10 Score=74.46 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=42.0
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
+.|.++|+||+|+.+. ...++.+.+.. ......++++||++|.|++++|+||.+.+..
T Consensus 160 ~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 160 NIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred CCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 4577889999999643 33444444321 1123579999999999999999999988754
No 156
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.17 E-value=1.4e-10 Score=65.77 Aligned_cols=70 Identities=21% Similarity=0.106 Sum_probs=48.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.+......+.. ....|+++|+||+|+.+.... . ......+++++||+++.|+++++
T Consensus 87 v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~------~----~~~~~~~~~~~Sa~~~~~v~~l~ 149 (157)
T cd04164 87 VIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL------L----SLLAGKPIIAISAKTGEGLDELK 149 (157)
T ss_pred EEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc------c----cccCCCceEEEECCCCCCHHHHH
Confidence 467776555544322111 246899999999999753222 1 12234679999999999999999
Q ss_pred HHHHHhh
Q psy2977 81 QWLIAHS 87 (92)
Q Consensus 81 ~~l~~~i 87 (92)
++|.+.+
T Consensus 150 ~~l~~~~ 156 (157)
T cd04164 150 EALLELA 156 (157)
T ss_pred HHHHHhh
Confidence 9998865
No 157
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.16 E-value=5.3e-10 Score=65.18 Aligned_cols=62 Identities=21% Similarity=0.193 Sum_probs=44.3
Q ss_pred CCCcEEEEeeCCCCCCCCC----HHHHHHhhccCCc---------CCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 27 IGIPILVLGNKRDLPNALD----EKELIDRMNLCAI---------QDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~---------~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.+.|+++++||+|+..... ..++.+.+..... .....+++++||++|.|+++++++|.+.+.
T Consensus 113 ~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 113 GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 4689999999999975322 2233333332211 123578999999999999999999998874
No 158
>KOG1489|consensus
Probab=99.16 E-value=1.2e-10 Score=73.15 Aligned_cols=79 Identities=23% Similarity=0.291 Sum_probs=53.1
Q ss_pred CeeCCch---hhHHHHHHHHHHhhc-CCCCCCCcEEEEeeCCCCCCCCCH--HHHHHhhccCCcCCCceEEEeeccccCC
Q psy2977 1 MVDAADT---DKLEASRNELHALIE-KPQLIGIPILVLGNKRDLPNALDE--KELIDRMNLCAIQDREICCYSISCKERD 74 (92)
Q Consensus 1 v~D~s~~---~~~~~~~~~~~~~~~-~~~~~~~p~ilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 74 (92)
|+|.+.+ +.++.......++-. +..+.+.|.++|+||+|++++... +++...+. +.+++++||++++
T Consensus 281 VvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq-------~~~V~pvsA~~~e 353 (366)
T KOG1489|consen 281 VVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ-------NPHVVPVSAKSGE 353 (366)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC-------CCcEEEeeecccc
Confidence 5788877 566655433333221 234678999999999999743211 33444332 2369999999999
Q ss_pred CHHHHHHHHHHh
Q psy2977 75 NIDITLQWLIAH 86 (92)
Q Consensus 75 gi~~~~~~l~~~ 86 (92)
|+++++..|.+.
T Consensus 354 gl~~ll~~lr~~ 365 (366)
T KOG1489|consen 354 GLEELLNGLREL 365 (366)
T ss_pred chHHHHHHHhhc
Confidence 999999988654
No 159
>COG2262 HflX GTPases [General function prediction only]
Probab=99.15 E-value=3.7e-10 Score=72.79 Aligned_cols=80 Identities=23% Similarity=0.317 Sum_probs=56.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+|+|...... .....++...+..++|+++|.||+|+..... ....+. ...+ ..+.+||++|.|++.+.
T Consensus 278 VVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~----~~~~-~~v~iSA~~~~gl~~L~ 348 (411)
T COG2262 278 VVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELE----RGSP-NPVFISAKTGEGLDLLR 348 (411)
T ss_pred EeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhh----hcCC-CeEEEEeccCcCHHHHH
Confidence 6899999655444 4466666666667899999999999764222 111111 0112 57899999999999999
Q ss_pred HHHHHhhhh
Q psy2977 81 QWLIAHSKS 89 (92)
Q Consensus 81 ~~l~~~i~~ 89 (92)
+.|.+.+..
T Consensus 349 ~~i~~~l~~ 357 (411)
T COG2262 349 ERIIELLSG 357 (411)
T ss_pred HHHHHHhhh
Confidence 999998864
No 160
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.15 E-value=3.4e-10 Score=63.68 Aligned_cols=82 Identities=27% Similarity=0.226 Sum_probs=50.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++........ ++.... ..+.|+++|+||+|+.......................+++++||+++.|+++++
T Consensus 82 v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 82 VVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 35666554443332 222222 2468999999999997543333322101111122345779999999999999999
Q ss_pred HHHHHhh
Q psy2977 81 QWLIAHS 87 (92)
Q Consensus 81 ~~l~~~i 87 (92)
++|.+.+
T Consensus 157 ~~l~~~~ 163 (163)
T cd00880 157 EALIEAL 163 (163)
T ss_pred HHHHhhC
Confidence 9998753
No 161
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.15 E-value=2.3e-10 Score=67.58 Aligned_cols=61 Identities=15% Similarity=0.026 Sum_probs=41.4
Q ss_pred CCcEEEEeeCCCCCCCCCH----HHHHHhhc--cCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 28 GIPILVLGNKRDLPNALDE----KELIDRMN--LCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
+.|+++++||+|+...... +++.+.+. +......+++++++||++|+|+++++++|.+++.
T Consensus 120 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 120 CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 5699999999998642221 22222211 0000123568999999999999999999998874
No 162
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.14 E-value=4e-10 Score=64.67 Aligned_cols=81 Identities=16% Similarity=0.066 Sum_probs=48.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+.... .++..+.. .+.|+++++||+|+.+. ...+.+...+..........+++++||++|.|+++
T Consensus 91 v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 165 (174)
T cd01895 91 VIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDK 165 (174)
T ss_pred EEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHH
Confidence 4577665444322 22332221 35899999999999754 22222223221110011235799999999999999
Q ss_pred HHHHHHHh
Q psy2977 79 TLQWLIAH 86 (92)
Q Consensus 79 ~~~~l~~~ 86 (92)
+++++.+.
T Consensus 166 ~~~~l~~~ 173 (174)
T cd01895 166 LFDAIDEV 173 (174)
T ss_pred HHHHHHHh
Confidence 99999764
No 163
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.13 E-value=1.4e-10 Score=66.21 Aligned_cols=55 Identities=18% Similarity=0.100 Sum_probs=38.1
Q ss_pred CcEEEEeeCCCCCCCCC----HHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHH
Q psy2977 29 IPILVLGNKRDLPNALD----EKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIA 85 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~ 85 (92)
.|+++++||+|+..... .+++.+.+.... ....+++++||++|+|++++++++.+
T Consensus 105 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 105 KRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--LADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--cCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 49999999999974321 123333332110 13467999999999999999999865
No 164
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.13 E-value=3.7e-10 Score=64.04 Aligned_cols=53 Identities=19% Similarity=0.072 Sum_probs=37.8
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
+.|+++|+||+|+.+.... ...+. . ....+++++||++|.|++++|++|.+++
T Consensus 105 ~~piiiv~nK~D~~~~~~~---~~~~~--~--~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 105 KKPVILVVNKVDNIKEEDE---AAEFY--S--LGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred CCCEEEEEECcccCChHHH---HHHHH--h--cCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 5899999999999753221 11111 0 1112579999999999999999998764
No 165
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.12 E-value=4.7e-10 Score=63.09 Aligned_cols=71 Identities=20% Similarity=0.248 Sum_probs=45.1
Q ss_pred hHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHH
Q psy2977 9 KLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84 (92)
Q Consensus 9 ~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~ 84 (92)
++.... .+...+..... .+.|+++++||+|+............+.. ....+++++||++|.|++++|++|.
T Consensus 89 ~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 89 DVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHHHHHhh
Confidence 344333 44444443322 27899999999999653223333333321 1234599999999999999999974
No 166
>KOG0095|consensus
Probab=99.11 E-value=3.8e-11 Score=68.30 Aligned_cols=84 Identities=17% Similarity=0.238 Sum_probs=60.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD-EKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++-..+|+-.-+|+.++-+... ..+--++|+||+|+.+... .+.+.+.+. ..+...+.++||+..+||+.+
T Consensus 86 vydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drrevp~qigeefs----~~qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRREVPQQIGEEFS----EAQDMYFLETSAKEADNVEKL 160 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhhhhhHHHHHHHH----HhhhhhhhhhcccchhhHHHH
Confidence 5799988899988899998876533 3456689999999974321 223333322 223455889999999999999
Q ss_pred HHHHHHhhhh
Q psy2977 80 LQWLIAHSKS 89 (92)
Q Consensus 80 ~~~l~~~i~~ 89 (92)
|..++-.+..
T Consensus 161 f~~~a~rli~ 170 (213)
T KOG0095|consen 161 FLDLACRLIS 170 (213)
T ss_pred HHHHHHHHHH
Confidence 9998877643
No 167
>KOG0393|consensus
Probab=99.11 E-value=3.2e-10 Score=67.27 Aligned_cols=85 Identities=13% Similarity=0.198 Sum_probs=59.4
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHhhccCC---------cC-CCceEEEee
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNALDE-KELIDRMNLCA---------IQ-DREICCYSI 68 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~~---------~~-~~~~~~~~~ 68 (92)
+|++.++++|+++. .|+-++... .++.|+++||+|.||.+.... +.+... +... .+ -+...+++|
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~-~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQ-GLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhc-cCCcccHHHHHHHHHHhCcceeeee
Confidence 47888999999975 788888765 478999999999999742211 111110 0000 00 123579999
Q ss_pred ccccCCCHHHHHHHHHHhhh
Q psy2977 69 SCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 69 SA~~~~gi~~~~~~l~~~i~ 88 (92)
||++..|+.++|+.......
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHh
Confidence 99999999999998877664
No 168
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.10 E-value=4.9e-10 Score=74.29 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=48.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++..++.. ..+...+.. .++|+++|+||+|+..... +..+...+ ..+ ..++|||++|.|++++|
T Consensus 124 VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~----g~~-~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 124 VVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSL----GLG-EPHPVSALHGRGVGDLL 191 (472)
T ss_pred EEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhc----CCC-CeEEEEcCCCCCcHHHH
Confidence 578887654432 222233322 3689999999999864321 11121111 111 24799999999999999
Q ss_pred HHHHHhhhh
Q psy2977 81 QWLIAHSKS 89 (92)
Q Consensus 81 ~~l~~~i~~ 89 (92)
++|.+.+.+
T Consensus 192 ~~i~~~l~~ 200 (472)
T PRK03003 192 DAVLAALPE 200 (472)
T ss_pred HHHHhhccc
Confidence 999988754
No 169
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.10 E-value=4.7e-10 Score=77.46 Aligned_cols=84 Identities=13% Similarity=0.041 Sum_probs=54.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++..+.... .++..+.. .++|+++|+||+|+.+....+.+...+..........+++++||++|.|++++|
T Consensus 539 ViDat~~~s~~~~-~i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~ 613 (712)
T PRK09518 539 LFDASQPISEQDL-KVMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLA 613 (712)
T ss_pred EEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHH
Confidence 5788876665544 23444432 368999999999997533323333322211001123467899999999999999
Q ss_pred HHHHHhhhh
Q psy2977 81 QWLIAHSKS 89 (92)
Q Consensus 81 ~~l~~~i~~ 89 (92)
+.+.+...+
T Consensus 614 ~~i~~~~~~ 622 (712)
T PRK09518 614 PAMQEALES 622 (712)
T ss_pred HHHHHHHHH
Confidence 999888764
No 170
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.09 E-value=9.4e-10 Score=64.24 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=61.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
++|.+.+..+ ++...+.- +... ..+|++|.+||+||+++.+.+.+.+.+.... ...++++++|..++|+.+.+
T Consensus 98 lVDss~~~~~-~a~~ii~f-~~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~a~e~~~~~~~L 170 (187)
T COG2229 98 LVDSSRPITF-HAEEIIDF-LTSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEIDATEGEGARDQL 170 (187)
T ss_pred EEecCCCcch-HHHHHHHH-Hhhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeeeecccchhHHHHH
Confidence 4789988887 44343333 3331 2299999999999999999999999886442 35779999999999999999
Q ss_pred HHHHHh
Q psy2977 81 QWLIAH 86 (92)
Q Consensus 81 ~~l~~~ 86 (92)
+.|...
T Consensus 171 ~~ll~~ 176 (187)
T COG2229 171 DVLLLK 176 (187)
T ss_pred HHHHhh
Confidence 988765
No 171
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.08 E-value=5.7e-10 Score=73.12 Aligned_cols=84 Identities=15% Similarity=0.073 Sum_probs=51.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++..+.... ..+..+.. .++|+++|+||+|+.+.....++.+.+..........+++++||++|.|+++++
T Consensus 262 ViD~~~~~~~~~~-~i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~ 336 (435)
T PRK00093 262 VIDATEGITEQDL-RIAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLL 336 (435)
T ss_pred EEeCCCCCCHHHH-HHHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHH
Confidence 4677765444332 22333322 358999999999997432233333333211111124679999999999999999
Q ss_pred HHHHHhhhh
Q psy2977 81 QWLIAHSKS 89 (92)
Q Consensus 81 ~~l~~~i~~ 89 (92)
+++.+...+
T Consensus 337 ~~i~~~~~~ 345 (435)
T PRK00093 337 EAIDEAYEN 345 (435)
T ss_pred HHHHHHHHH
Confidence 998876543
No 172
>PRK12289 GTPase RsgA; Reviewed
Probab=99.08 E-value=3.7e-10 Score=72.44 Aligned_cols=77 Identities=19% Similarity=0.140 Sum_probs=49.2
Q ss_pred CeeCCchh-hHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++++. .......++.... ..++|+++|+||+||..........+.+ ...++.++.+||++|.|++++
T Consensus 96 V~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~~iSA~tg~GI~eL 166 (352)
T PRK12289 96 VFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPLFISVETGIGLEAL 166 (352)
T ss_pred EEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEEEEEcCCCCCHHHH
Confidence 46777654 2223344554432 2468999999999996321112222222 123467899999999999999
Q ss_pred HHHHHHh
Q psy2977 80 LQWLIAH 86 (92)
Q Consensus 80 ~~~l~~~ 86 (92)
+++|...
T Consensus 167 ~~~L~~k 173 (352)
T PRK12289 167 LEQLRNK 173 (352)
T ss_pred hhhhccc
Confidence 9998754
No 173
>KOG4252|consensus
Probab=99.05 E-value=2.5e-10 Score=66.78 Aligned_cols=82 Identities=21% Similarity=0.228 Sum_probs=63.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
||..+|+.+|+....|.+++... ..++|.++|-||+|+.+. +...++.... +.....++.+|++...||-+
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~evE~la-----k~l~~RlyRtSvked~NV~~ 171 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKGEVEGLA-----KKLHKRLYRTSVKEDFNVMH 171 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhhcchHHHHHHH-----HHhhhhhhhhhhhhhhhhHH
Confidence 56788999999999999998765 468999999999999753 3333333321 12345689999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|..|++.+.+
T Consensus 172 vF~YLaeK~~q 182 (246)
T KOG4252|consen 172 VFAYLAEKLTQ 182 (246)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 174
>PRK00089 era GTPase Era; Reviewed
Probab=99.05 E-value=9e-10 Score=68.90 Aligned_cols=81 Identities=20% Similarity=0.221 Sum_probs=50.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|+++. +.....++.+.+.. .+.|+++|+||+|+... .......+.+.. ......++++||++|.|++++
T Consensus 91 vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~iSA~~~~gv~~L 162 (292)
T PRK00089 91 VVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPISALKGDNVDEL 162 (292)
T ss_pred EEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEecCCCCCCHHHH
Confidence 4576652 22222334444332 35899999999999632 111222222211 112457999999999999999
Q ss_pred HHHHHHhhhh
Q psy2977 80 LQWLIAHSKS 89 (92)
Q Consensus 80 ~~~l~~~i~~ 89 (92)
+++|.+.+..
T Consensus 163 ~~~L~~~l~~ 172 (292)
T PRK00089 163 LDVIAKYLPE 172 (292)
T ss_pred HHHHHHhCCC
Confidence 9999988754
No 175
>PRK12288 GTPase RsgA; Reviewed
Probab=99.04 E-value=9.7e-10 Score=70.45 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=51.2
Q ss_pred eeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHH
Q psy2977 2 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQ 81 (92)
Q Consensus 2 ~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~ 81 (92)
++.+...++..+..|+.... ..++|.++|+||+||.+......+.+.... ....+++++++||++|+|++++++
T Consensus 128 ~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~tg~GideL~~ 201 (347)
T PRK12288 128 SAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSHTGEGLEELEA 201 (347)
T ss_pred EeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCCCCcCHHHHHH
Confidence 34444456666666765432 246899999999999643221222222111 112346899999999999999999
Q ss_pred HHHHhh
Q psy2977 82 WLIAHS 87 (92)
Q Consensus 82 ~l~~~i 87 (92)
+|...+
T Consensus 202 ~L~~ki 207 (347)
T PRK12288 202 ALTGRI 207 (347)
T ss_pred HHhhCC
Confidence 997643
No 176
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.04 E-value=6.7e-10 Score=63.17 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=39.8
Q ss_pred CCcEEEEeeCCCCCC-CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 28 GIPILVLGNKRDLPN-ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
+.|+++|+||+|+.. .....+....+.. .....+++++||+++.|+++++++|.+.+
T Consensus 111 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 111 KTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred CCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence 579999999999973 2222233332221 12235789999999999999999998753
No 177
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.03 E-value=2.3e-09 Score=72.85 Aligned_cols=78 Identities=28% Similarity=0.270 Sum_probs=51.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhccCCcCCCceEEEeeccccCCCHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE---KELIDRMNLCAIQDREICCYSISCKERDNID 77 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 77 (92)
|+|+++.........|... .. .++|+++|+||+|++..... +++.+.++. ....++++||++|.||+
T Consensus 100 VvDat~g~~~qt~~~~~~~-~~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~-----~~~~vi~vSAktG~GI~ 169 (595)
T TIGR01393 100 LVDAAQGIEAQTLANVYLA-LE----NDLEIIPVINKIDLPSADPERVKKEIEEVIGL-----DASEAILASAKTGIGIE 169 (595)
T ss_pred EecCCCCCCHhHHHHHHHH-HH----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCC-----CcceEEEeeccCCCCHH
Confidence 5788875444443343332 22 25799999999999753221 233333221 12358999999999999
Q ss_pred HHHHHHHHhhh
Q psy2977 78 ITLQWLIAHSK 88 (92)
Q Consensus 78 ~~~~~l~~~i~ 88 (92)
++|++|.+.+.
T Consensus 170 ~Lle~I~~~lp 180 (595)
T TIGR01393 170 EILEAIVKRVP 180 (595)
T ss_pred HHHHHHHHhCC
Confidence 99999998775
No 178
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.02 E-value=4.4e-10 Score=76.23 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=47.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++.+ ....+..++.+ .++|+++|+||+|+.+......-.+.+. ...+.+++++||++|+|+++++
T Consensus 79 VvDat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pvv~tSA~tg~Gi~eL~ 147 (591)
T TIGR00437 79 VVDASNLE---RNLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPVVPTSATEGRGIERLK 147 (591)
T ss_pred EecCCcch---hhHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCEEEEECCCCCCHHHHH
Confidence 35666533 22333444432 3689999999999864222111111111 1124579999999999999999
Q ss_pred HHHHHhh
Q psy2977 81 QWLIAHS 87 (92)
Q Consensus 81 ~~l~~~i 87 (92)
+++.+..
T Consensus 148 ~~i~~~~ 154 (591)
T TIGR00437 148 DAIRKAI 154 (591)
T ss_pred HHHHHHh
Confidence 9998753
No 179
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.01 E-value=1.2e-09 Score=68.48 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=50.5
Q ss_pred CeeCCchh-hHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|+.++. ++.....|+..+.. .++|+++|+||+||.+. .+...... . ....+.+++.+||++|.|++++
T Consensus 85 V~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~--~~~~~~~~-~--~~~~g~~v~~vSA~~g~gi~~L 155 (287)
T cd01854 85 VVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDD--EEEELELV-E--ALALGYPVLAVSAKTGEGLDEL 155 (287)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCCh--HHHHHHHH-H--HHhCCCeEEEEECCCCccHHHH
Confidence 46777776 66666666665532 36899999999999643 11111110 0 0123467899999999999999
Q ss_pred HHHHHH
Q psy2977 80 LQWLIA 85 (92)
Q Consensus 80 ~~~l~~ 85 (92)
+.+|..
T Consensus 156 ~~~L~~ 161 (287)
T cd01854 156 REYLKG 161 (287)
T ss_pred Hhhhcc
Confidence 988864
No 180
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.00 E-value=8.7e-10 Score=65.10 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=40.2
Q ss_pred CCCcEEEEeeCCCCCCCC-CHHHHHHhh---ccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 27 IGIPILVLGNKRDLPNAL-DEKELIDRM---NLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.++|+++|+||+|+.... ....+.... ...........++.+||++|.|+++++++|.+.+.
T Consensus 60 ~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 60 GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 468999999999986432 222222211 00000011135899999999999999999998764
No 181
>PRK00098 GTPase RsgA; Reviewed
Probab=98.99 E-value=7.3e-10 Score=69.73 Aligned_cols=77 Identities=21% Similarity=0.151 Sum_probs=48.8
Q ss_pred CeeCCchhhHHHH-HHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++++...... ..|+..+.. .++|+++|+||+||.+. .+........ ....+++++++||++|.|++++
T Consensus 87 V~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~--~~~~~~~~~~--~~~~g~~v~~vSA~~g~gi~~L 158 (298)
T PRK00098 87 VFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDD--LEEARELLAL--YRAIGYDVLELSAKEGEGLDEL 158 (298)
T ss_pred EEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCC--HHHHHHHHHH--HHHCCCeEEEEeCCCCccHHHH
Confidence 4688776544333 355554432 36899999999999532 2222111111 1123467999999999999999
Q ss_pred HHHHHH
Q psy2977 80 LQWLIA 85 (92)
Q Consensus 80 ~~~l~~ 85 (92)
++++..
T Consensus 159 ~~~l~g 164 (298)
T PRK00098 159 KPLLAG 164 (298)
T ss_pred HhhccC
Confidence 998754
No 182
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.99 E-value=8.9e-10 Score=63.15 Aligned_cols=56 Identities=23% Similarity=0.156 Sum_probs=38.8
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
++|+++|+||+|+.+........... ...+.+++.+||++|.|++++++.|.+.+.
T Consensus 41 ~~p~iiv~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 41 GKKLLIVLNKADLVPKEVLEKWKSIK-----ESEGIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred CCcEEEEEEhHHhCCHHHHHHHHHHH-----HhCCCcEEEEEccccccHHHHHHHHHHHHh
Confidence 58999999999985321111111111 112346899999999999999999988764
No 183
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.98 E-value=1.5e-09 Score=63.90 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=41.8
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
++|+++++||+|+......+.....+... +......++++||++|.|+++++++|.+.+++
T Consensus 135 ~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 135 GIPVLIVLTKADKLKKGERKKQLKKVRKA-LKFGDDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHHHH-HHhcCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 68999999999986432222222211100 11114678999999999999999999988764
No 184
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.97 E-value=7.4e-10 Score=63.78 Aligned_cols=68 Identities=28% Similarity=0.404 Sum_probs=45.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC----CCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA----LDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|+++. +.......++++. ++|+++++||+|+... .+.+.+.+.+ +++++++||++|+|+
T Consensus 85 VvDa~~l---~r~l~l~~ql~e~----g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L--------g~pvi~~sa~~~~g~ 149 (156)
T PF02421_consen 85 VVDATNL---ERNLYLTLQLLEL----GIPVVVVLNKMDEAERKGIEIDAEKLSERL--------GVPVIPVSARTGEGI 149 (156)
T ss_dssp EEEGGGH---HHHHHHHHHHHHT----TSSEEEEEETHHHHHHTTEEE-HHHHHHHH--------TS-EEEEBTTTTBTH
T ss_pred ECCCCCH---HHHHHHHHHHHHc----CCCEEEEEeCHHHHHHcCCEECHHHHHHHh--------CCCEEEEEeCCCcCH
Confidence 4677653 3333334445432 6899999999997532 2345555554 357999999999999
Q ss_pred HHHHHHH
Q psy2977 77 DITLQWL 83 (92)
Q Consensus 77 ~~~~~~l 83 (92)
+++++.+
T Consensus 150 ~~L~~~I 156 (156)
T PF02421_consen 150 DELKDAI 156 (156)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9998865
No 185
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.97 E-value=2e-09 Score=63.65 Aligned_cols=83 Identities=25% Similarity=0.237 Sum_probs=45.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhc-cC-CcCCCceEEEeeccccCCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE---KELIDRMN-LC-AIQDREICCYSISCKERDN 75 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~-~~-~~~~~~~~~~~~SA~~~~g 75 (92)
|+|+++. .+.....++..... .++|+++|+||+|+...... +++.+.+. +. .....+++++++||++|.|
T Consensus 95 V~d~~~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~ 169 (194)
T cd01891 95 LVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWA 169 (194)
T ss_pred EEECCCC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccc
Confidence 5687763 22233333444332 36899999999999653221 22233221 00 0112356899999999988
Q ss_pred HHHH------HHHHHHhhh
Q psy2977 76 IDIT------LQWLIAHSK 88 (92)
Q Consensus 76 i~~~------~~~l~~~i~ 88 (92)
+.++ +.+|.+.+.
T Consensus 170 ~~~~~~~~~~~~~l~~~~~ 188 (194)
T cd01891 170 SLNLEDPSEDLEPLFDTII 188 (194)
T ss_pred ccccccchhhHHHHHHHHH
Confidence 7444 445554443
No 186
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.96 E-value=4e-09 Score=69.54 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=50.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.+++.. |+..+.. .++|+++|+||+|+... +.+.+.. ..+.+++.+||++ .||+++|
T Consensus 289 V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~--------~~~~~~~~vSak~-~gI~~~~ 352 (442)
T TIGR00450 289 VLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVS--------SKVLNSSNLSAKQ-LKIKALV 352 (442)
T ss_pred EEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhh--------hcCCceEEEEEec-CCHHHHH
Confidence 5788887776553 5555432 36899999999999643 2222111 1234578999998 6999999
Q ss_pred HHHHHhhhh
Q psy2977 81 QWLIAHSKS 89 (92)
Q Consensus 81 ~~l~~~i~~ 89 (92)
+.|.+.+.+
T Consensus 353 ~~L~~~i~~ 361 (442)
T TIGR00450 353 DLLTQKINA 361 (442)
T ss_pred HHHHHHHHH
Confidence 999887754
No 187
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.95 E-value=3.3e-09 Score=62.56 Aligned_cols=61 Identities=28% Similarity=0.359 Sum_probs=40.4
Q ss_pred CCCcEEEEeeCCCCCCCCCH----HHHHHhh-ccCCcCC-CceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDE----KELIDRM-NLCAIQD-REICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~----~~~~~~~-~~~~~~~-~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.++|+++|+||+|+... .. +++...+ ....... ..++++++||++|.|++++++.|.+.+.
T Consensus 121 ~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 121 LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccceEEeeeeccchhh-hHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 36889999999999721 11 1222222 1111111 2578999999999999999999998764
No 188
>KOG0096|consensus
Probab=98.95 E-value=5e-10 Score=65.78 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=61.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
++|++..-.+.++..|-+.+... ..++|+++++||.|....... .+. ..-....+++++++||+++.|.+..|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv--~~NiPiv~cGNKvDi~~r~~k---~k~--v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRV--RENIPIVLCGNKVDIKARKVK---AKP--VSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHH--hcCCCeeeeccceeccccccc---ccc--ceeeecccceeEEeecccccccccch
Confidence 37888877888888898888765 357999999999997532211 111 11123567889999999999999999
Q ss_pred HHHHHhhhh
Q psy2977 81 QWLIAHSKS 89 (92)
Q Consensus 81 ~~l~~~i~~ 89 (92)
.||++.+..
T Consensus 162 l~LarKl~G 170 (216)
T KOG0096|consen 162 LWLARKLTG 170 (216)
T ss_pred HHHhhhhcC
Confidence 999998754
No 189
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.95 E-value=3.8e-09 Score=63.14 Aligned_cols=85 Identities=24% Similarity=0.295 Sum_probs=57.6
Q ss_pred CeeCCch-hhHHHHHHHHHHhhcCCC--CCCCcEEEEeeCCCCCCCCCHHHHHHhhc-------------cCC-------
Q psy2977 1 MVDAADT-DKLEASRNELHALIEKPQ--LIGIPILVLGNKRDLPNALDEKELIDRMN-------------LCA------- 57 (92)
Q Consensus 1 v~D~s~~-~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~-------------~~~------- 57 (92)
|+|+++. .++..+..++..++.... ...+|+++++||+|+..+.+.+.+.+.++ +..
T Consensus 79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~ 158 (203)
T cd04105 79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGS 158 (203)
T ss_pred EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 5788887 677777788777664322 14799999999999976555433332221 000
Q ss_pred ---------------cCCCceEEEeeccccCC-CHHHHHHHHHH
Q psy2977 58 ---------------IQDREICCYSISCKERD-NIDITLQWLIA 85 (92)
Q Consensus 58 ---------------~~~~~~~~~~~SA~~~~-gi~~~~~~l~~ 85 (92)
....+..++++|++.+. |++.+-+||.+
T Consensus 159 ~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 159 KESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 00124678999998876 69999999875
No 190
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.94 E-value=2.5e-09 Score=61.39 Aligned_cols=77 Identities=19% Similarity=0.255 Sum_probs=47.8
Q ss_pred CeeCCchhhHHHHHHHHH-HhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhh-ccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELH-ALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRM-NLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~-~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++..... .++. ..+.. .++|+++|+||+|+.+ .+++.... ... ......++.+||++|.|+++
T Consensus 6 VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~---~~~~~~~~~~~~--~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 6 VLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVP---KEVLRKWLAYLR--HSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred EEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCC---HHHHHHHHHHHH--hhCCceEEEEeccCCcChhh
Confidence 568877644332 2343 23222 4689999999999953 22222211 011 11235689999999999999
Q ss_pred HHHHHHHhh
Q psy2977 79 TLQWLIAHS 87 (92)
Q Consensus 79 ~~~~l~~~i 87 (92)
+.+.+.+.+
T Consensus 76 L~~~i~~~~ 84 (155)
T cd01849 76 KESAFTKQT 84 (155)
T ss_pred HHHHHHHHh
Confidence 999987653
No 191
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.93 E-value=1.1e-08 Score=69.59 Aligned_cols=78 Identities=24% Similarity=0.254 Sum_probs=50.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhccCCcCCCceEEEeeccccCCCHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE---KELIDRMNLCAIQDREICCYSISCKERDNID 77 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 77 (92)
|+|+++.........|.. ... .++|+++|+||+|++..... +++.+.++. ....++++||++|.|++
T Consensus 104 VVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~-----~~~~vi~iSAktG~GI~ 173 (600)
T PRK05433 104 VVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGI-----DASDAVLVSAKTGIGIE 173 (600)
T ss_pred EEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCC-----CcceEEEEecCCCCCHH
Confidence 578876533333323322 221 35799999999999754221 233332221 12358999999999999
Q ss_pred HHHHHHHHhhh
Q psy2977 78 ITLQWLIAHSK 88 (92)
Q Consensus 78 ~~~~~l~~~i~ 88 (92)
+++++|.+.+.
T Consensus 174 ~Ll~~I~~~lp 184 (600)
T PRK05433 174 EVLEAIVERIP 184 (600)
T ss_pred HHHHHHHHhCc
Confidence 99999998775
No 192
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.92 E-value=2.6e-09 Score=67.77 Aligned_cols=86 Identities=24% Similarity=0.288 Sum_probs=52.7
Q ss_pred CeeCCchh---hHHHHHHHHHHhhc-CCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhccCCcCCCceEEEe-eccccCC
Q psy2977 1 MVDAADTD---KLEASRNELHALIE-KPQLIGIPILVLGNKRDLPNAL-DEKELIDRMNLCAIQDREICCYS-ISCKERD 74 (92)
Q Consensus 1 v~D~s~~~---~~~~~~~~~~~~~~-~~~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~SA~~~~ 74 (92)
|+|++..+ ..+++.....++-. .+.+.++|.+||+||+|++... ..+.+.+.+. ....+..+. +||.+++
T Consensus 244 viD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~----~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 244 VIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALA----EALGWEVFYLISALTRE 319 (369)
T ss_pred EEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHH----HhcCCCcceeeehhccc
Confidence 46777433 24444333333333 2456789999999999976432 2233334332 112232222 9999999
Q ss_pred CHHHHHHHHHHhhhhc
Q psy2977 75 NIDITLQWLIAHSKSH 90 (92)
Q Consensus 75 gi~~~~~~l~~~i~~~ 90 (92)
|+++++..+.+.+.+.
T Consensus 320 g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 320 GLDELLRALAELLEET 335 (369)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999888654
No 193
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.90 E-value=6.3e-09 Score=59.77 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=47.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++..- ....+.+.+... ..++|+++|+||+|+.+..........+. ......++.+||++|.|+++++
T Consensus 15 VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~----~~~~~~~~~iSa~~~~~~~~L~ 87 (157)
T cd01858 15 VLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILS----KEYPTIAFHASINNPFGKGSLI 87 (157)
T ss_pred EEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHh----cCCcEEEEEeeccccccHHHHH
Confidence 4677765221 112344444321 23589999999999953211112222221 1123346889999999999999
Q ss_pred HHHHHhh
Q psy2977 81 QWLIAHS 87 (92)
Q Consensus 81 ~~l~~~i 87 (92)
+++.+.+
T Consensus 88 ~~l~~~~ 94 (157)
T cd01858 88 QLLRQFS 94 (157)
T ss_pred HHHHHHH
Confidence 9997764
No 194
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=8.1e-09 Score=68.47 Aligned_cols=59 Identities=24% Similarity=0.360 Sum_probs=42.3
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCc----CCCceEEEeeccccCCCHHHHHHHHHHh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAI----QDREICCYSISCKERDNIDITLQWLIAH 86 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~gi~~~~~~l~~~ 86 (92)
.+.|++++.||+|+++..+ +.+...+....+ ..+...++++||++|+|+++++..+.-.
T Consensus 106 a~vP~iVAiNKiDk~~~np-~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 106 AGVPIVVAINKIDKPEANP-DKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred CCCCEEEEEecccCCCCCH-HHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHH
Confidence 5799999999999996533 333333322211 2345789999999999999999877644
No 195
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.85 E-value=1.8e-08 Score=69.89 Aligned_cols=60 Identities=23% Similarity=0.303 Sum_probs=42.1
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCc----CCCceEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAI----QDREICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
.++|+++++||+|++.. +.+++...+..... ....++++++||++|.|+++++++|....
T Consensus 346 ~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 346 ANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred cCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 46899999999999753 33444433321110 12246899999999999999999997653
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.83 E-value=1.4e-08 Score=70.30 Aligned_cols=56 Identities=20% Similarity=0.110 Sum_probs=39.3
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
.++|+++|+||+|+.... ....+...+ . ....+++||++|.||+++|++|.+.+..
T Consensus 382 ~~~pvIlV~NK~D~~~~~--~~~~~~~~l----g-~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 382 AGKPVVLAVNKIDDQASE--YDAAEFWKL----G-LGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred cCCCEEEEEECcccccch--hhHHHHHHc----C-CCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 468999999999986421 122222111 1 1135789999999999999999988754
No 197
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.83 E-value=1.7e-08 Score=57.48 Aligned_cols=60 Identities=17% Similarity=0.089 Sum_probs=39.1
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCc-CCCceEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAI-QDREICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
+.|+++++||+|+.................. .....+++++||+++.|+.+++++|.+.+
T Consensus 110 ~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 110 GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 4799999999998532222212111110000 12345789999999999999999998763
No 198
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.83 E-value=2e-08 Score=65.72 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=39.9
Q ss_pred CcEEEEeeCCCCCCCCCH----HHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 29 IPILVLGNKRDLPNALDE----KELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.|+++|+||+|+.+.... +++...+... .....+++++||++|.|+++++++|.+.+.
T Consensus 140 ~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 140 KNIVIVQNKIDLVSKERALENYEQIKEFVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred CcEEEEEEeeccccchhHHHHHHHHHHHhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 478999999999643221 1222222110 112467999999999999999999998765
No 199
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.83 E-value=1.7e-08 Score=68.62 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=40.6
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCc----CCCceEEEeeccccCCCHHHHHHHHHH
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAI----QDREICCYSISCKERDNIDITLQWLIA 85 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~gi~~~~~~l~~ 85 (92)
.++|+++++||+|+++. +.+++...+..... .....+++++||++|+|++++|++|..
T Consensus 186 ~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 186 ANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred cCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 46899999999999753 33444443321110 112357999999999999999999865
No 200
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.83 E-value=1.6e-08 Score=66.09 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=39.6
Q ss_pred CcEEEEeeCCCCCCCCCH----HHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 29 IPILVLGNKRDLPNALDE----KELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.|+++++||+|+.+.... +++.+.+.. .....++++++||++|.|+++++++|...+.
T Consensus 135 ~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~--~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 135 KNIVIVQNKIDLVSKEKALENYEEIKEFVKG--TVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CeEEEEEEccccCCHHHHHHHHHHHHhhhhh--cccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 578999999999743211 222222110 0112467999999999999999999998654
No 201
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.81 E-value=6.6e-09 Score=62.24 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=40.6
Q ss_pred CCcEEEEeeCCCCCCCCC--HHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 28 GIPILVLGNKRDLPNALD--EKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
..|.++++||+|+.+... ..++.+.+.. .....+++++||++|.|++++|+|+.++.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~---~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKK---INPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHH---hCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999975322 2333333221 12346799999999999999999998764
No 202
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.81 E-value=9.1e-09 Score=71.72 Aligned_cols=59 Identities=24% Similarity=0.370 Sum_probs=40.9
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCc----CCCceEEEeeccccCCCHHHHHHHHHHh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAI----QDREICCYSISCKERDNIDITLQWLIAH 86 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~gi~~~~~~l~~~ 86 (92)
.++|+++++||+|+++. +.+.+...+..... ....++++++||++|.||+++|++|...
T Consensus 388 ~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 388 AGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred cCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 46899999999999753 33333332211111 1224689999999999999999998753
No 203
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.81 E-value=1e-08 Score=61.22 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=39.0
Q ss_pred EEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 32 LVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 32 ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
++++||+|+.+. ...+.+.+.+... +...+++++||++|+|++++|+|+.+...
T Consensus 141 ~~~~~k~d~~~~~~~~~~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 141 LLVINKIDLAPMVGADLGVMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred EEEEEhhhccccccccHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 899999999753 2233333333211 23467999999999999999999998764
No 204
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.81 E-value=1e-08 Score=69.63 Aligned_cols=61 Identities=23% Similarity=0.168 Sum_probs=40.8
Q ss_pred CCc-EEEEeeCCCCCCCCCHH----HHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 28 GIP-ILVLGNKRDLPNALDEK----ELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 28 ~~p-~ilv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
++| +++|+||+|+.+....+ ++.+.+..... ..+.+++++||++|+|+++++.+|.+.+..
T Consensus 102 gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~-~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 102 GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF-LKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC-CCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 467 99999999997532211 22222211100 114689999999999999999999877653
No 205
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.81 E-value=1.1e-08 Score=61.70 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=32.4
Q ss_pred CCcEEEEeeCCCCCCC-CC---HHHHHHh----hccCCcCCCceEEEeeccccCCCHHH
Q psy2977 28 GIPILVLGNKRDLPNA-LD---EKELIDR----MNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~-~~---~~~~~~~----~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
..|+++++||+|++.+ .+ .+++.+. +........+++++++||++|.||++
T Consensus 137 ~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 137 VKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred CCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 3689999999999742 12 1222222 22111122357899999999999874
No 206
>PRK13768 GTPase; Provisional
Probab=98.80 E-value=8.4e-09 Score=63.63 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=43.4
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhcc--------CC---------------c--CCCceEEEeeccccCCCHHHHHH
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNL--------CA---------------I--QDREICCYSISCKERDNIDITLQ 81 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~--------~~---------------~--~~~~~~~~~~SA~~~~gi~~~~~ 81 (92)
.++|+++|+||+|+......+.....+.. .. + .....+++++||++++|++++.+
T Consensus 161 ~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~ 240 (253)
T PRK13768 161 LGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYA 240 (253)
T ss_pred cCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHH
Confidence 36899999999999754333333332221 00 0 01235789999999999999999
Q ss_pred HHHHhhhh
Q psy2977 82 WLIAHSKS 89 (92)
Q Consensus 82 ~l~~~i~~ 89 (92)
+|.+.+..
T Consensus 241 ~I~~~l~~ 248 (253)
T PRK13768 241 AIQEVFCG 248 (253)
T ss_pred HHHHHcCC
Confidence 99988743
No 207
>KOG0090|consensus
Probab=98.79 E-value=6.7e-08 Score=57.99 Aligned_cols=86 Identities=20% Similarity=0.253 Sum_probs=58.0
Q ss_pred CeeCC-chhhHHHHHHHHHHhhcCCC--CCCCcEEEEeeCCCCCCCCCHHHHHHhhccC---------------------
Q psy2977 1 MVDAA-DTDKLEASRNELHALIEKPQ--LIGIPILVLGNKRDLPNALDEKELIDRMNLC--------------------- 56 (92)
Q Consensus 1 v~D~s-~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~--------------------- 56 (92)
|+|+. .+.....+.+.+..++.... ...+|++|++||+|+..+.+.+-|++.++..
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 45655 34455666677777776542 2458999999999997766655554443210
Q ss_pred --------------CcCCCceEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 57 --------------AIQDREICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 57 --------------~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
.+......|.++|+++| +++++-+|+.+.+
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 01123467889999999 9999999998753
No 208
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.78 E-value=5.4e-09 Score=67.37 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=38.4
Q ss_pred CCcEEEEeeCCCCCCC-CCHHHHHHhhccCCcCCCc---eEEEeeccccCCCHHHHHHHHHHh
Q psy2977 28 GIPILVLGNKRDLPNA-LDEKELIDRMNLCAIQDRE---ICCYSISCKERDNIDITLQWLIAH 86 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~SA~~~~gi~~~~~~l~~~ 86 (92)
+.|+++|+||+|+.+. ...+.+.+.+... ....+ ..++.+||++|.|++++++.|.+.
T Consensus 90 ~~piilV~NK~DLl~k~~~~~~~~~~l~~~-~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPKSVNLSKIKEWMKKR-AKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CCCEEEEEEchhhCCCCCCHHHHHHHHHHH-HHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 5799999999998532 2333333221100 01112 248999999999999999999764
No 209
>KOG3883|consensus
Probab=98.77 E-value=2.6e-08 Score=57.09 Aligned_cols=84 Identities=13% Similarity=0.247 Sum_probs=57.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE-KELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
||+..|++||+.+.-.-.++-...+-.++|+++++||+|+.++... .++....+ ..-....++++|.....+-+.
T Consensus 91 VYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa----~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 91 VYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWA----KREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred EecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHH----hhhheeEEEEEeccchhhhhH
Confidence 5788899999876432233333444568999999999999643221 12222221 233577899999999999999
Q ss_pred HHHHHHhhh
Q psy2977 80 LQWLIAHSK 88 (92)
Q Consensus 80 ~~~l~~~i~ 88 (92)
|..|...+.
T Consensus 167 f~~l~~rl~ 175 (198)
T KOG3883|consen 167 FTYLASRLH 175 (198)
T ss_pred HHHHHHhcc
Confidence 999988764
No 210
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.76 E-value=8.1e-08 Score=63.56 Aligned_cols=56 Identities=27% Similarity=0.271 Sum_probs=42.3
Q ss_pred CCcEEEEeeCCCCCCCCCH---HHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 28 GIPILVLGNKRDLPNALDE---KELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
+.-++-|+||+|||.+.+. .++.+.+++.. -..+.+|||||.||+++++.+.+.+.
T Consensus 128 ~LeIiPViNKIDLP~Adpervk~eIe~~iGid~-----~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 128 NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA-----SDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc-----chheeEecccCCCHHHHHHHHHhhCC
Confidence 4567888999999976432 34555555432 24789999999999999999998874
No 211
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.75 E-value=5e-08 Score=59.27 Aligned_cols=58 Identities=22% Similarity=0.321 Sum_probs=37.9
Q ss_pred CCcEEEEeeCCCCCCCCCH----HHHHHhhccCCc---------------------CCCceEEEeeccccCCCHHHHHHH
Q psy2977 28 GIPILVLGNKRDLPNALDE----KELIDRMNLCAI---------------------QDREICCYSISCKERDNIDITLQW 82 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~----~~~~~~~~~~~~---------------------~~~~~~~~~~SA~~~~gi~~~~~~ 82 (92)
++|+++|+||+|+...... .++.+.+..... .....++|.+||.+|+|++++...
T Consensus 138 ~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~ 217 (224)
T cd04165 138 NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAF 217 (224)
T ss_pred CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHH
Confidence 5799999999998543222 223333321100 112347999999999999999887
Q ss_pred HHH
Q psy2977 83 LIA 85 (92)
Q Consensus 83 l~~ 85 (92)
|..
T Consensus 218 L~~ 220 (224)
T cd04165 218 LNL 220 (224)
T ss_pred HHh
Confidence 754
No 212
>KOG4423|consensus
Probab=98.74 E-value=1.6e-08 Score=59.52 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=61.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCC---CCCCCcEEEEeeCCCCCCCCCH---HHHHHhhccCCcCCCceEEEeeccccCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKP---QLIGIPILVLGNKRDLPNALDE---KELIDRMNLCAIQDREICCYSISCKERD 74 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 74 (92)
|||+|++..|+.+..|.+++.+.. ....+|+++++||+|....... ..+..... .+.....+++|||.+.
T Consensus 105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k----engf~gwtets~Kenk 180 (229)
T KOG4423|consen 105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK----ENGFEGWTETSAKENK 180 (229)
T ss_pred EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh----ccCccceeeecccccc
Confidence 689999999999999999876643 3345899999999998532111 12222211 1223458999999999
Q ss_pred CHHHHHHHHHHhhhh
Q psy2977 75 NIDITLQWLIAHSKS 89 (92)
Q Consensus 75 gi~~~~~~l~~~i~~ 89 (92)
+++|+.+.|++++.-
T Consensus 181 ni~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 181 NIPEAQRELVEKILV 195 (229)
T ss_pred ChhHHHHHHHHHHHh
Confidence 999999999998753
No 213
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.74 E-value=4.6e-08 Score=58.60 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=34.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCC------------------CCCCCcEEEEeeCCCCCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKP------------------QLIGIPILVLGNKRDLPN 42 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~------------------~~~~~p~ilv~NK~Dl~~ 42 (92)
|+|++++++|+++..|+.++.... ...++|++||+||.|+.+
T Consensus 84 VyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 84 VHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred EEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 689999999999999999887531 123689999999999964
No 214
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.73 E-value=8.5e-08 Score=57.41 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=55.2
Q ss_pred CeeCCchhhHHHH-HHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHH-HHHHhh----------ccCCcC-CCceEEEe
Q psy2977 1 MVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKRDLPNALDEK-ELIDRM----------NLCAIQ-DREICCYS 67 (92)
Q Consensus 1 v~D~s~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-~~~~~~----------~~~~~~-~~~~~~~~ 67 (92)
|+|.++..++.+. ..|...+..... ...|+++|+||+|+....... .+...+ ...... .....+++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence 4677875555554 466666654422 469999999999997643211 111110 000000 11234899
Q ss_pred eccc--cCCCHHHHHHHHHHhhhh
Q psy2977 68 ISCK--ERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 68 ~SA~--~~~gi~~~~~~l~~~i~~ 89 (92)
+||+ ++.||.++|..+...+..
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHH
Confidence 9999 999999999999888753
No 215
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.73 E-value=1.2e-08 Score=66.91 Aligned_cols=51 Identities=22% Similarity=0.123 Sum_probs=32.2
Q ss_pred CCcEEEEeeCCCCCCCCC------HHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 28 GIPILVLGNKRDLPNALD------EKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
..|+++++||+|+.+... ..++.+.+.........++++++||++|.|+++
T Consensus 141 ~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 141 INQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred CCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 357999999999964211 122222222111122347899999999999986
No 216
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.72 E-value=1.1e-08 Score=59.83 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=31.8
Q ss_pred CCcEEEEeeCCCCCCCCC----HHHHHHhhccCCcCCCceEEEeeccccCCCHH
Q psy2977 28 GIPILVLGNKRDLPNALD----EKELIDRMNLCAIQDREICCYSISCKERDNID 77 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 77 (92)
++|+++++||+|+..... .+++.+.+.. ....+.++++||++|+|++
T Consensus 129 ~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~---~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 129 GIPVLIVLTKADKLKKSELNKQLKKIKKALKK---DADDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHHHHHhh---ccCCCceEEEECCCCCCCC
Confidence 689999999999964322 2233333321 1224579999999999984
No 217
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.72 E-value=4.8e-08 Score=59.61 Aligned_cols=52 Identities=27% Similarity=0.161 Sum_probs=39.0
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.-+|+++|+||+|+. +.++.... . ....++++||++|.|++++|+.+.+.+.
T Consensus 175 ~y~p~iiV~NK~Dl~---~~~~~~~~-~------~~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 175 VYIPCLYVYNKIDLI---SIEELDLL-A------RQPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred eEeeEEEEEECccCC---CHHHHHHH-h------cCCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 347999999999986 33343321 1 1234889999999999999999998763
No 218
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.69 E-value=9.3e-08 Score=62.65 Aligned_cols=55 Identities=18% Similarity=0.101 Sum_probs=39.2
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
++|+++|+||+|+..... ...+...+ ...+++++||++|.|++++++++.+.+.+
T Consensus 107 ~~piilVvNK~D~~~~~~--~~~~~~~l-----g~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 107 GKPVILVANKIDGKKEDA--VAAEFYSL-----GFGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred CCCEEEEEECccCCcccc--cHHHHHhc-----CCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 589999999999864321 11111111 11258999999999999999999988743
No 219
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.67 E-value=1.8e-07 Score=61.54 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=37.0
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
++|+++|+||+|+... .....+...+ ....++++||++|.|++++++++....
T Consensus 109 ~~piilv~NK~D~~~~--~~~~~~~~~l-----g~~~~~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 109 NKPVILVVNKVDGPDE--EADAYEFYSL-----GLGEPYPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred CCcEEEEEECccCccc--hhhHHHHHhc-----CCCCCEEEEeeCCCCHHHHHHHHHhhC
Confidence 6899999999997541 1222222111 111378999999999999999998743
No 220
>PRK13796 GTPase YqeH; Provisional
Probab=98.67 E-value=3.8e-08 Score=63.60 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=38.6
Q ss_pred CCcEEEEeeCCCCCCC-CCHHHHHHhhccCCcCCCc---eEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 28 GIPILVLGNKRDLPNA-LDEKELIDRMNLCAIQDRE---ICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
+.|+++|+||+||.+. ...+.+...+... ....+ ..++.+||++|.|++++++.|.+..
T Consensus 96 ~kpviLViNK~DLl~~~~~~~~i~~~l~~~-~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 96 NNPVLLVGNKADLLPKSVKKNKVKNWLRQE-AKELGLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCEEEEEEchhhCCCccCHHHHHHHHHHH-HHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 5799999999999642 2223332221100 01111 2589999999999999999997754
No 221
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.66 E-value=9.4e-08 Score=65.07 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.2
Q ss_pred ceEEEeeccccCCCHHHHHHHHHHh
Q psy2977 62 EICCYSISCKERDNIDITLQWLIAH 86 (92)
Q Consensus 62 ~~~~~~~SA~~~~gi~~~~~~l~~~ 86 (92)
..+++++||+||+|+++++.+|...
T Consensus 190 ~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 190 TVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred CceEEEeecCCCCChhHHHHHHHHH
Confidence 4689999999999999999998653
No 222
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.66 E-value=7.1e-08 Score=67.38 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=48.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++.++ ...+..++.+ .++|+++++||+|+.+......-.+.+. ...+.+++++||++|+|++++.
T Consensus 92 VvDat~ler---~l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA~~g~GIdeL~ 160 (772)
T PRK09554 92 VVDASNLER---NLYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVSTRGRGIEALK 160 (772)
T ss_pred EecCCcchh---hHHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEeecCCCHHHHH
Confidence 467776543 2234444433 2589999999999864322211111111 1124578999999999999999
Q ss_pred HHHHHhh
Q psy2977 81 QWLIAHS 87 (92)
Q Consensus 81 ~~l~~~i 87 (92)
+.+.+..
T Consensus 161 ~~I~~~~ 167 (772)
T PRK09554 161 LAIDRHQ 167 (772)
T ss_pred HHHHHhh
Confidence 9988764
No 223
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.66 E-value=8.7e-08 Score=54.45 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=39.0
Q ss_pred CCcEEEEeeCCCCC-CCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHH
Q psy2977 28 GIPILVLGNKRDLP-NALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~ 84 (92)
++|++=|.||+|++ +..+.+...+.+..... -.+|.+||.+|+||+++.++|.
T Consensus 89 ~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~----~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 89 NKPVIGVITKIDLPSDDANIERAKKWLKNAGV----KEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCCEEEEEECccCccchhhHHHHHHHHHHcCC----CCeEEEECCCCcCHHHHHHHHh
Confidence 58999999999998 33344444455432221 2479999999999999999985
No 224
>KOG0462|consensus
Probab=98.66 E-value=2.1e-07 Score=62.40 Aligned_cols=56 Identities=27% Similarity=0.363 Sum_probs=42.1
Q ss_pred CCcEEEEeeCCCCCCCCCHH---HHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 28 GIPILVLGNKRDLPNALDEK---ELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
+..+|.|+||+|+|.+...+ ++.+.+++ ..-+++.+||++|.|++++++.+.+.+.
T Consensus 177 ~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~-----~~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 177 GLAIIPVLNKIDLPSADPERVENQLFELFDI-----PPAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred CCeEEEeeeccCCCCCCHHHHHHHHHHHhcC-----CccceEEEEeccCccHHHHHHHHHhhCC
Confidence 56789999999999764433 23333332 2346899999999999999999999874
No 225
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.63 E-value=5.5e-08 Score=63.87 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=32.1
Q ss_pred CcEEEEeeCCCCCCCCC------HHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 29 IPILVLGNKRDLPNALD------EKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
.|+++++||+|+.+... .+++.+.+.........++++++||++|.|+++.
T Consensus 140 ~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 140 NQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred CeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 46899999999974211 1233333221111122467999999999999873
No 226
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.62 E-value=1.6e-07 Score=64.06 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=52.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhccCCc--CCCceEEEeeccccCC-
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE---KELIDRMNLCAI--QDREICCYSISCKERD- 74 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~SA~~~~- 74 (92)
|+|+++. .......++..+.. .++|+++++||+|++++... .++.+.+..... ....++++.+||++|.
T Consensus 94 VVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~ 168 (594)
T TIGR01394 94 LVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWA 168 (594)
T ss_pred EEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcc
Confidence 4677642 33344556666543 35799999999999754321 233333311101 1224679999999995
Q ss_pred ---------CHHHHHHHHHHhhh
Q psy2977 75 ---------NIDITLQWLIAHSK 88 (92)
Q Consensus 75 ---------gi~~~~~~l~~~i~ 88 (92)
|++.+|+.+.+.+.
T Consensus 169 ~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 169 SLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred cccCcccccCHHHHHHHHHHhCC
Confidence 89999999998875
No 227
>KOG1145|consensus
Probab=98.60 E-value=1.7e-07 Score=62.95 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=43.5
Q ss_pred CCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCc----CCCceEEEeeccccCCCHHHHHHHHHHh
Q psy2977 25 QLIGIPILVLGNKRDLPNALDEKELIDRMNLCAI----QDREICCYSISCKERDNIDITLQWLIAH 86 (92)
Q Consensus 25 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~gi~~~~~~l~~~ 86 (92)
...+.|+++.+||+|.|++. .+.+...+-...+ .....+++++||++|+|++.+-+.+.-+
T Consensus 250 k~A~VpiVvAinKiDkp~a~-pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 250 KSANVPIVVAINKIDKPGAN-PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLL 314 (683)
T ss_pred HhcCCCEEEEEeccCCCCCC-HHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHH
Confidence 34679999999999998764 4444333322211 2456899999999999999988876543
No 228
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.59 E-value=4.9e-07 Score=64.82 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.4
Q ss_pred CceEEEeeccccCCCHHHHHHHHHHh
Q psy2977 61 REICCYSISCKERDNIDITLQWLIAH 86 (92)
Q Consensus 61 ~~~~~~~~SA~~~~gi~~~~~~l~~~ 86 (92)
...+++++||+||+||++++.+|...
T Consensus 646 ~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 646 RTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 35689999999999999999988644
No 229
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.58 E-value=1.4e-07 Score=58.90 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=38.7
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
++|+++|+||+|+.+........+.+. ..+..++.+||+++.|++++.+.+.+.+.
T Consensus 48 ~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 48 NKPRLIVLNKADLADPAVTKQWLKYFE-----EKGIKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred CCCEEEEEEccccCCHHHHHHHHHHHH-----HcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 579999999999953211122222221 11246899999999999999998887764
No 230
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.57 E-value=1.4e-07 Score=59.50 Aligned_cols=62 Identities=19% Similarity=0.069 Sum_probs=40.5
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhh--ccCCc----CCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRM--NLCAI----QDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.++|.++++||+|+.+..........+ .+..+ .....+++++||++|+|+++++++|.+.+.
T Consensus 171 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 171 MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 457889999999997543322211111 11111 112235899999999999999999988753
No 231
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.57 E-value=5.5e-07 Score=59.13 Aligned_cols=63 Identities=16% Similarity=0.048 Sum_probs=43.3
Q ss_pred CCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 27 IGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
.+.+++||.||.|+.+. ...++..+.+......-...+++.+||++|.|+.++|+++......
T Consensus 288 ~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 288 AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHH
Confidence 36899999999998654 3334444443321101123578999999999999999998876543
No 232
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.56 E-value=3e-07 Score=61.06 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=39.6
Q ss_pred CcEEEEeeCCCCCCCCCH----HHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 29 IPILVLGNKRDLPNALDE----KELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.|+++|+||+|+.+.... +++.+.+.. ......+++++||++|.|++.+++.|.+.+.
T Consensus 172 ~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~--~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 172 KHIIILQNKIDLVKEAQAQDQYEEIRNFVKG--TIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred CcEEEEEecccccCHHHHHHHHHHHHHHHHh--hccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 468999999999742221 222222210 0123568999999999999999999987654
No 233
>PRK09866 hypothetical protein; Provisional
Probab=98.56 E-value=5e-07 Score=62.00 Aligned_cols=58 Identities=16% Similarity=0.052 Sum_probs=39.4
Q ss_pred CcEEEEeeCCCCCCCCC--HHHHHHhhc--cCCcCCCceEEEeeccccCCCHHHHHHHHHHh
Q psy2977 29 IPILVLGNKRDLPNALD--EKELIDRMN--LCAIQDREICCYSISCKERDNIDITLQWLIAH 86 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~ 86 (92)
.|+++|+||+|+.+... .+.+..... +.........+|++||++|.|++++++.|...
T Consensus 290 ~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 290 VPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred CCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 59999999999863221 344444322 11111123469999999999999999998873
No 234
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.55 E-value=1.9e-07 Score=54.37 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=37.9
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
++|.++|+||+|+.+........+.+. .....++.+||+++.|++++...+...+
T Consensus 46 ~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 46 NKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred CCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 579999999999963211111112211 1124588999999999999999998875
No 235
>COG1159 Era GTPase [General function prediction only]
Probab=98.54 E-value=2.5e-07 Score=57.94 Aligned_cols=60 Identities=20% Similarity=0.113 Sum_probs=42.8
Q ss_pred CCCcEEEEeeCCCCCCCCC-HHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 27 IGIPILVLGNKRDLPNALD-EKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
...|+++++||+|...... ...+.+.+.. ......++++||++|.|++.+.+.+...+.+
T Consensus 113 ~~~pvil~iNKID~~~~~~~l~~~~~~~~~---~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 113 TKTPVILVVNKIDKVKPKTVLLKLIAFLKK---LLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred cCCCeEEEEEccccCCcHHHHHHHHHHHHh---hCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 3579999999999865433 1223332221 1223479999999999999999999998865
No 236
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.54 E-value=8.7e-07 Score=60.48 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.2
Q ss_pred ceEEEeeccccCCCHHHHHHHHHH
Q psy2977 62 EICCYSISCKERDNIDITLQWLIA 85 (92)
Q Consensus 62 ~~~~~~~SA~~~~gi~~~~~~l~~ 85 (92)
..+++++||++|+|++++++.+..
T Consensus 192 ~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 192 TVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred CceEeeccCCCCCChHHHHHHHHH
Confidence 468999999999999999988764
No 237
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.54 E-value=9.8e-08 Score=53.98 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=37.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDN 75 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 75 (92)
|+|+.++.+.. ...+.+.+.... .++|+++|+||+|+.+........+.+. .....++++||++|.+
T Consensus 18 ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 18 IVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFK-----KEGIVVVFFSALKENA 84 (141)
T ss_pred EEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHH-----hcCCeEEEEEecCCCc
Confidence 46777654322 123333333221 4689999999999853221122222221 2235689999998764
No 238
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.53 E-value=2.9e-07 Score=63.06 Aligned_cols=58 Identities=16% Similarity=0.096 Sum_probs=38.6
Q ss_pred Cc-EEEEeeCCCCCCCCCHH----HHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 29 IP-ILVLGNKRDLPNALDEK----ELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 29 ~p-~ilv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
+| +++|+||+|+.+....+ ++.+.+... .....+++++||++|+|+++++++|.+...
T Consensus 104 i~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~--~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 104 NPMLTVALTKADRVDEARIAEVRRQVKAVLREY--GFAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred CCeEEEEEECCccCCHHHHHHHHHHHHHHHHhc--CCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 45 57999999996422222 222222111 112357999999999999999999987654
No 239
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.52 E-value=1.4e-07 Score=59.27 Aligned_cols=55 Identities=31% Similarity=0.308 Sum_probs=39.0
Q ss_pred CcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHh
Q psy2977 29 IPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAH 86 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~ 86 (92)
.+-++|+||+|+.+.. +.+.+.+.+.. .....+++++||++|+|++++++||.++
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5569999999997422 23333333211 1235679999999999999999999874
No 240
>PRK10218 GTP-binding protein; Provisional
Probab=98.48 E-value=7.6e-07 Score=60.95 Aligned_cols=83 Identities=20% Similarity=0.189 Sum_probs=51.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhcc-CCc-CCCceEEEeeccccCC-
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE---KELIDRMNL-CAI-QDREICCYSISCKERD- 74 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~-~~~-~~~~~~~~~~SA~~~~- 74 (92)
|+|+++.. ......++..+.. .++|.++++||+|++.+... +++.+.+.. ... ....++++.+||++|.
T Consensus 98 VVDa~~G~-~~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~ 172 (607)
T PRK10218 98 VVDAFDGP-MPQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIA 172 (607)
T ss_pred EEecccCc-cHHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcc
Confidence 46776531 1222333444332 36789999999999765432 233333311 111 1235789999999998
Q ss_pred ---------CHHHHHHHHHHhhh
Q psy2977 75 ---------NIDITLQWLIAHSK 88 (92)
Q Consensus 75 ---------gi~~~~~~l~~~i~ 88 (92)
|+..+++.+.+.+.
T Consensus 173 ~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 173 GLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred cCCccccccchHHHHHHHHHhCC
Confidence 68899998888764
No 241
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.47 E-value=1.7e-07 Score=55.62 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=38.5
Q ss_pred EEEeeCCCCCCCCCH--HHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 32 LVLGNKRDLPNALDE--KELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 32 ilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
++|+||.||.+.... +...+.... .+...+++++|++||+|++++++|+....
T Consensus 146 llVInK~DLa~~v~~dlevm~~da~~---~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 146 LLVINKTDLAPYVGADLEVMARDAKE---VNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EEEEehHHhHHHhCccHHHHHHHHHH---hCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 689999999764432 433333221 13457899999999999999999998764
No 242
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.47 E-value=3.1e-07 Score=57.66 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=38.7
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
++|+++|+||+|+.+........+.+. ..+..++.+||+++.|++++.+.+.+.+.
T Consensus 51 ~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 51 NKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred CCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 579999999999953211112222221 11346789999999999999998887764
No 243
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.44 E-value=7.7e-07 Score=60.84 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=51.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC----CCCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN----ALDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|+++.++ .....-++++ -++|+++++|++|... .++.+.+.+.+ +.+++++||++|.|+
T Consensus 88 VvDAtnLeR---nLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L--------GvPVv~tvA~~g~G~ 152 (653)
T COG0370 88 VVDATNLER---NLYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLL--------GVPVVPTVAKRGEGL 152 (653)
T ss_pred EcccchHHH---HHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHh--------CCCEEEEEeecCCCH
Confidence 457776543 2222333432 2689999999999853 23555565554 467999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy2977 77 DITLQWLIAHSKS 89 (92)
Q Consensus 77 ~~~~~~l~~~i~~ 89 (92)
+++.+.+.+...+
T Consensus 153 ~~l~~~i~~~~~~ 165 (653)
T COG0370 153 EELKRAIIELAES 165 (653)
T ss_pred HHHHHHHHHhccc
Confidence 9999998875544
No 244
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.38 E-value=1.7e-06 Score=51.58 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=42.3
Q ss_pred CCCcEEEEeeCCCCCCCCCH----HHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDE----KELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
.++|+++++||+|....... ..+.+.+.... ....+ ++..|+.++.|++++-..|.+.+..
T Consensus 134 ~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~-~~~~~-~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 134 LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP-PDDQW-VVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC-Cccce-EEEEecccccCHHHHHHHHHHHhhc
Confidence 36899999999998753222 33444443221 11122 8889999999999999999888764
No 245
>PRK01889 GTPase RsgA; Reviewed
Probab=98.38 E-value=2.5e-06 Score=55.15 Aligned_cols=53 Identities=19% Similarity=0.349 Sum_probs=36.9
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHH
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~ 84 (92)
.++|.+||+||+||.+. .++..+.+.. . ..+++++.+||++|.|++++..+|.
T Consensus 141 ~~i~piIVLNK~DL~~~--~~~~~~~~~~--~-~~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 141 SGAEPVIVLTKADLCED--AEEKIAEVEA--L-APGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred cCCCEEEEEEChhcCCC--HHHHHHHHHH--h-CCCCcEEEEECCCCccHHHHHHHhh
Confidence 35777999999999643 2222222111 1 2356789999999999999999885
No 246
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.37 E-value=1.2e-06 Score=57.73 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=40.9
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
.++|+++|.||.||........+ + . ....+++.+||+||+|++.+.+.|.+.+..
T Consensus 323 ~~~~~i~v~NK~DL~~~~~~~~~-~-~------~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 323 KKKPIIVVLNKADLVSKIELESE-K-L------ANGDAIISISAKTGEGLDALREAIKQLFGK 377 (454)
T ss_pred cCCCEEEEEechhcccccccchh-h-c------cCCCceEEEEecCccCHHHHHHHHHHHHhh
Confidence 46899999999999764432222 1 0 123368999999999999999999887754
No 247
>PLN00023 GTP-binding protein; Provisional
Probab=98.36 E-value=7.6e-07 Score=56.82 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=34.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCC-----------CCCCcEEEEeeCCCCCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQ-----------LIGIPILVLGNKRDLPN 42 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~-----------~~~~p~ilv~NK~Dl~~ 42 (92)
|+|++++.+|+.+..|++.+..... ..++|++||+||+||..
T Consensus 113 VyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 113 VHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 6899999999999999988875421 13589999999999964
No 248
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.34 E-value=1.3e-06 Score=55.99 Aligned_cols=59 Identities=22% Similarity=0.135 Sum_probs=40.0
Q ss_pred cEEEEeeCCCCCCCCC----HHHHHHhhccCCcC--CCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 30 PILVLGNKRDLPNALD----EKELIDRMNLCAIQ--DREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 30 p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.-++|+||.|+..... ..++...+.+.... ....+++.+||++|.||++++++|.+++.
T Consensus 196 aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 196 ADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3489999999874322 23344444332111 12246999999999999999999998764
No 249
>KOG1673|consensus
Probab=98.31 E-value=1.9e-06 Score=49.65 Aligned_cols=85 Identities=15% Similarity=0.154 Sum_probs=58.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhccCCcCCCceEEEeeccccCCCHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE---KELIDRMNLCAIQDREICCYSISCKERDNID 77 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 77 (92)
++|.+.+..++.+++|..+...-.. ..+| ++|++|-|+--..+. +++..... ...+-.+...|.||+....||.
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar-~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPELQETISRQAR-KYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHHHHHHHHHHHH-HHHHHhCCcEEEeeccccccHH
Confidence 4799999999999999999875432 3466 678999996432222 22322211 1112245679999999999999
Q ss_pred HHHHHHHHhhh
Q psy2977 78 ITLQWLIAHSK 88 (92)
Q Consensus 78 ~~~~~l~~~i~ 88 (92)
..|..+...+.
T Consensus 176 KIFK~vlAklF 186 (205)
T KOG1673|consen 176 KIFKIVLAKLF 186 (205)
T ss_pred HHHHHHHHHHh
Confidence 99997766553
No 250
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.29 E-value=2.8e-06 Score=55.92 Aligned_cols=54 Identities=20% Similarity=0.079 Sum_probs=39.0
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
.++|+++|+||+|-... .....+...+ ..-.++.+||..|.|+.++++++...+
T Consensus 111 ~~kpviLvvNK~D~~~~--e~~~~efysl-----G~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 111 SKKPVILVVNKIDNLKA--EELAYEFYSL-----GFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred cCCCEEEEEEcccCchh--hhhHHHHHhc-----CCCCceEeehhhccCHHHHHHHHHhhc
Confidence 35899999999997521 1222332221 123478999999999999999999886
No 251
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.27 E-value=5e-06 Score=49.57 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=29.2
Q ss_pred CCc-EEEEeeCCCCCCCCC-HH----HHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 28 GIP-ILVLGNKRDLPNALD-EK----ELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 28 ~~p-~ilv~NK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
++| +++++||+|+..... .+ ++...+..........+++++||++|.|+
T Consensus 117 ~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 117 GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 456 778999999863211 11 23333221111123578999999999985
No 252
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.25 E-value=1.2e-06 Score=51.76 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=34.6
Q ss_pred CeeCC-chhhHHHHHHHHHHhhcCCC--CCCCcEEEEeeCCCCCCCCCHHHHHHhhc
Q psy2977 1 MVDAA-DTDKLEASRNELHALIEKPQ--LIGIPILVLGNKRDLPNALDEKELIDRMN 54 (92)
Q Consensus 1 v~D~s-~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~ 54 (92)
|+|++ +...+.++.+.+..++.... ...+|++|++||+|+..+.+...++..++
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE 138 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLE 138 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence 57887 45567777777888776432 24689999999999988777666666553
No 253
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.25 E-value=9e-07 Score=48.23 Aligned_cols=37 Identities=32% Similarity=0.498 Sum_probs=27.0
Q ss_pred CeeCCchhhHHHHHH---HHHHhhcCCCCCCCcEEEEeeCCC
Q psy2977 1 MVDAADTDKLEASRN---ELHALIEKPQLIGIPILVLGNKRD 39 (92)
Q Consensus 1 v~D~s~~~~~~~~~~---~~~~~~~~~~~~~~p~ilv~NK~D 39 (92)
|||++++.+++.+.. |+..+... ..++|+++|+||.|
T Consensus 80 v~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 689999999988744 45555432 24699999999998
No 254
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.22 E-value=1.3e-05 Score=49.19 Aligned_cols=27 Identities=15% Similarity=-0.030 Sum_probs=23.4
Q ss_pred ceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 62 EICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 62 ~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
-++++..||.++.|+..+++.+.+.+.
T Consensus 209 ~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 209 VFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred eEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 357888899999999999999988763
No 255
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.19 E-value=2.7e-06 Score=50.98 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=29.3
Q ss_pred CcEEEEeeCCCCCCCCC--HHHHHHhhcc--CCcCCCceEEEeeccccCCCHHHH
Q psy2977 29 IPILVLGNKRDLPNALD--EKELIDRMNL--CAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
.|+++|+||+|+.+... ...+...+.. ..+.....+++++||++|.|+.+.
T Consensus 131 ~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 131 RHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred CcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 45778999999964211 1112111110 001112356899999999999753
No 256
>PRK12736 elongation factor Tu; Reviewed
Probab=98.19 E-value=1e-05 Score=52.92 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=38.1
Q ss_pred CCc-EEEEeeCCCCCCCCCH-----HHHHHhhccCCcCCCceEEEeeccccCC--------CHHHHHHHHHHhhh
Q psy2977 28 GIP-ILVLGNKRDLPNALDE-----KELIDRMNLCAIQDREICCYSISCKERD--------NIDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p-~ilv~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~SA~~~~--------gi~~~~~~l~~~i~ 88 (92)
++| +++++||+|+.+.... +++.+.+..........+++++||++|. ++.++++.|.+.+.
T Consensus 127 g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 127 GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 567 6788999998632111 1223322211111224679999999983 68888888887664
No 257
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.16 E-value=2.7e-06 Score=53.65 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=41.5
Q ss_pred CCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 26 LIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 26 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
..++..+||+||+||.+...... .+.+.. ....+++++.+||+++.|++++..+|...+
T Consensus 108 ~~gi~pvIvlnK~DL~~~~~~~~-~~~~~~--y~~~gy~v~~~s~~~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 108 AGGIEPVIVLNKIDLLDDEEAAV-KELLRE--YEDIGYPVLFVSAKNGDGLEELAELLAGKI 166 (301)
T ss_pred HcCCcEEEEEEccccCcchHHHH-HHHHHH--HHhCCeeEEEecCcCcccHHHHHHHhcCCe
Confidence 35677788899999986443332 122111 124578899999999999999999887654
No 258
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.16 E-value=1.6e-06 Score=53.61 Aligned_cols=60 Identities=22% Similarity=0.181 Sum_probs=38.8
Q ss_pred CcEEEEeeCCCCCCCC-CHHHHHHhhccCCcC--CCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 29 IPILVLGNKRDLPNAL-DEKELIDRMNLCAIQ--DREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
++=++|.||.|++.+. ...++...+.+.... .+..+++.|||.+|.||+++++.|.++..
T Consensus 168 iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 168 IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3448999999976432 234555555543322 23457999999999999999999987653
No 259
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.12 E-value=1.1e-05 Score=44.94 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=40.9
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAH 86 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~ 86 (92)
..|.|=|.+|.||++..+.+..+..+.. ....++|.+||.+..||+++++.|...
T Consensus 90 ~k~vIgvVTK~DLaed~dI~~~~~~L~e----aGa~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 90 VKKVIGVVTKADLAEDADISLVKRWLRE----AGAEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred ccceEEEEecccccchHhHHHHHHHHHH----cCCcceEEEeccCcccHHHHHHHHHhh
Confidence 3568889999999864455444544432 124579999999999999999998764
No 260
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.11 E-value=1.5e-05 Score=50.81 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC------------------CCCHHHHHHhhc-----cCCcCCCceE
Q psy2977 8 DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN------------------ALDEKELIDRMN-----LCAIQDREIC 64 (92)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~------------------~~~~~~~~~~~~-----~~~~~~~~~~ 64 (92)
.++.++...++.+++++...++|+++++||+|+.. ..+.+.....+. ......+.+.
T Consensus 208 nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~ 287 (317)
T cd00066 208 NRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIY 287 (317)
T ss_pred hHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEE
Confidence 67888888899999887778899999999999521 011222222111 1111134566
Q ss_pred EEeeccccCCCHHHHHHHHHHhhhhc
Q psy2977 65 CYSISCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 65 ~~~~SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
++.++|..-.++..+|..+.+.+..+
T Consensus 288 ~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 288 PHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred EEeccccchHHHHHHHHHHHHHHHHH
Confidence 78899999999999999998887653
No 261
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.08 E-value=1e-05 Score=51.67 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=40.5
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHH-HHHHhhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQ-WLIAHSKS 89 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~-~l~~~i~~ 89 (92)
..+|+++++||+|+... .+..+.+.. ......++++||+.+.|++++.+ .+.+++..
T Consensus 213 t~KPvI~VlNK~Dl~~~---~~~~~~l~~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 213 RSKPMVIAANKADIPDA---ENNISKLRL---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred cCCcEEEEEEHHHccCh---HHHHHHHHh---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 45899999999998532 222222221 12245699999999999999997 68888754
No 262
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.04 E-value=4.6e-05 Score=49.14 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC-----------------CCHHHH----HHhhc-cCCc-CCCce
Q psy2977 7 TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-----------------LDEKEL----IDRMN-LCAI-QDREI 63 (92)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-----------------~~~~~~----~~~~~-~~~~-~~~~~ 63 (92)
..++.++...++.+++++...+.|++|++||.|+... .+.+.. ...+. .... ..+.+
T Consensus 230 ~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~ 309 (342)
T smart00275 230 TNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSI 309 (342)
T ss_pred chHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceE
Confidence 3578888889999998877788999999999997320 011111 22111 1110 12456
Q ss_pred EEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 64 CCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 64 ~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
.++.+||.+-.++..+|..+.+.+.+
T Consensus 310 y~h~t~a~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 310 YHHFTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred EEEEeeecccHHHHHHHHHHHHHHHH
Confidence 77889999999999999998887764
No 263
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.02 E-value=2.2e-05 Score=52.19 Aligned_cols=51 Identities=24% Similarity=0.229 Sum_probs=30.8
Q ss_pred CC-cEEEEeeCCCCCCC-CC-------HHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 28 GI-PILVLGNKRDLPNA-LD-------EKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 28 ~~-p~ilv~NK~Dl~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
++ ++++++||+|+.+. .+ .+++...+.........++++++||++|+|+.+
T Consensus 144 gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 144 GVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 45 46889999998621 11 223333332111112247899999999999854
No 264
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.99 E-value=1.8e-05 Score=50.53 Aligned_cols=51 Identities=27% Similarity=0.179 Sum_probs=39.0
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
-+|-++|.||+|++. .+++..... ....+.+||++|.|++++.+.|.+.+.
T Consensus 239 Y~p~l~v~NKiD~~~---~e~~~~l~~-------~~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 239 YKPALYVVNKIDLPG---LEELERLAR-------KPNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred eeeeEEEEecccccC---HHHHHHHHh-------ccceEEEecccCCCHHHHHHHHHHhhC
Confidence 489999999999975 333333211 125899999999999999999998764
No 265
>KOG1423|consensus
Probab=97.97 E-value=1.9e-05 Score=50.14 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=23.7
Q ss_pred EEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 64 CCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 64 ~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
.+|.+||++|+||+++-+||..+...
T Consensus 247 ~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 247 RVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred eEEEEecccccCHHHHHHHHHhcCCC
Confidence 59999999999999999999988754
No 266
>KOG1707|consensus
Probab=97.97 E-value=3e-06 Score=57.27 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=52.4
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCC-CCCCcEEEEeeCCCCCCCCCH--HH----HHHhhccCCcCCCceEEEeecccc
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQ-LIGIPILVLGNKRDLPNALDE--KE----LIDRMNLCAIQDREICCYSISCKE 72 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~SA~~ 72 (92)
+++.+++.+++.+. .|+=.+.+..+ --+.|+|+|+||+|.....+. +. +..++. . --..++|||++
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~--E----iEtciecSA~~ 159 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFA--E----IETCIECSALT 159 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhH--H----HHHHHhhhhhh
Confidence 35667777887765 56655544211 146999999999998653322 22 111111 0 12378999999
Q ss_pred CCCHHHHHHHHHHhh
Q psy2977 73 RDNIDITLQWLIAHS 87 (92)
Q Consensus 73 ~~gi~~~~~~l~~~i 87 (92)
-.++.++|....+.+
T Consensus 160 ~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 160 LANVSELFYYAQKAV 174 (625)
T ss_pred hhhhHhhhhhhhhee
Confidence 999999998776654
No 267
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.96 E-value=1.2e-05 Score=50.68 Aligned_cols=60 Identities=23% Similarity=0.190 Sum_probs=41.7
Q ss_pred CcEEEEeeCCCCCCCC-CHHHHHHhhccCC----cCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 29 IPILVLGNKRDLPNAL-DEKELIDRMNLCA----IQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
+-=++|.||.|..++. ...++...+.+.. ......+++.|||.+|+|++++++.+.++..
T Consensus 190 iaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 190 IADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred hhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 3348899999976532 2334455444332 1223457999999999999999999988875
No 268
>PRK12735 elongation factor Tu; Reviewed
Probab=97.93 E-value=7.7e-05 Score=48.92 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=36.9
Q ss_pred CCcEE-EEeeCCCCCCCCC-HH----HHHHhhccCCcCCCceEEEeeccccCC----------CHHHHHHHHHHhh
Q psy2977 28 GIPIL-VLGNKRDLPNALD-EK----ELIDRMNLCAIQDREICCYSISCKERD----------NIDITLQWLIAHS 87 (92)
Q Consensus 28 ~~p~i-lv~NK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~SA~~~~----------gi~~~~~~l~~~i 87 (92)
++|.+ +++||+|+.+... .+ ++...+........+.+++++||++|. |+..+++.|.+.+
T Consensus 127 gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 127 GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 57755 5799999963211 11 233332211111124789999999984 7888888887765
No 269
>KOG1532|consensus
Probab=97.92 E-value=3.5e-05 Score=48.47 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=42.8
Q ss_pred CCCcEEEEeeCCCCCCCC-------CHHHHHHhhcc-C-----CcC----------CCceEEEeeccccCCCHHHHHHHH
Q psy2977 27 IGIPILVLGNKRDLPNAL-------DEKELIDRMNL-C-----AIQ----------DREICCYSISCKERDNIDITLQWL 83 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~-------~~~~~~~~~~~-~-----~~~----------~~~~~~~~~SA~~~~gi~~~~~~l 83 (92)
...|+|+++||+|+.+.. +.+.+.+.+.. . .+. -.+...+.+||.||.|.+++|..+
T Consensus 180 tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av 259 (366)
T KOG1532|consen 180 TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAV 259 (366)
T ss_pred ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHH
Confidence 468999999999997642 12233333321 0 000 124678999999999999999998
Q ss_pred HHhhhh
Q psy2977 84 IAHSKS 89 (92)
Q Consensus 84 ~~~i~~ 89 (92)
...+.+
T Consensus 260 ~~~vdE 265 (366)
T KOG1532|consen 260 DESVDE 265 (366)
T ss_pred HHHHHH
Confidence 876643
No 270
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.91 E-value=5.4e-05 Score=51.34 Aligned_cols=26 Identities=8% Similarity=-0.036 Sum_probs=23.3
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.+++..||.++.||..+++.+.+.+.
T Consensus 249 ~PV~~GSA~~n~Gv~~LLd~i~~~~P 274 (526)
T PRK00741 249 TPVFFGSALNNFGVQEFLDAFVEWAP 274 (526)
T ss_pred EEEEEeecccCcCHHHHHHHHHHHCC
Confidence 56889999999999999999998874
No 271
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.88 E-value=8.4e-05 Score=48.70 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=32.8
Q ss_pred CCcEE-EEeeCCCCCCCCC-H----HHHHHhhccCCcCCCceEEEeeccccCC--------CHHHHHHHHHHh
Q psy2977 28 GIPIL-VLGNKRDLPNALD-E----KELIDRMNLCAIQDREICCYSISCKERD--------NIDITLQWLIAH 86 (92)
Q Consensus 28 ~~p~i-lv~NK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~SA~~~~--------gi~~~~~~l~~~ 86 (92)
++|.+ +++||+|+.+... . +++.+.+.........++++++||++|. ++..+++.|.+.
T Consensus 127 gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 127 GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 46655 6899999864211 1 1233333211111123789999999885 345555555543
No 272
>CHL00071 tufA elongation factor Tu
Probab=97.84 E-value=9.1e-05 Score=48.77 Aligned_cols=48 Identities=23% Similarity=0.195 Sum_probs=28.2
Q ss_pred CCc-EEEEeeCCCCCCCCCH-----HHHHHhhccCCcCCCceEEEeeccccCCC
Q psy2977 28 GIP-ILVLGNKRDLPNALDE-----KELIDRMNLCAIQDREICCYSISCKERDN 75 (92)
Q Consensus 28 ~~p-~ilv~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 75 (92)
++| +++++||+|+.+.... +++...+..........+++++||.+|.|
T Consensus 127 g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 127 GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 568 6789999999742211 12333322111112247899999999873
No 273
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=4.3e-05 Score=48.96 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=42.1
Q ss_pred CcEEEEeeCCCCCCCC----CHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 29 IPILVLGNKRDLPNAL----DEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
+.++++-||+||.... +.+++.+...-.. .-+.+++++||..+.||+-+++.|.+.+..
T Consensus 141 k~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~--Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 141 KNIIIVQNKIDLVSRERALENYEQIKEFVKGTV--AENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred ceEEEEecccceecHHHHHHHHHHHHHHhcccc--cCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 5689999999997421 2334444332110 124679999999999999999999999864
No 274
>PRK00049 elongation factor Tu; Reviewed
Probab=97.80 E-value=0.00016 Score=47.45 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=36.6
Q ss_pred CCcEE-EEeeCCCCCCCCC-H----HHHHHhhccCCcCCCceEEEeeccccCC----------CHHHHHHHHHHhh
Q psy2977 28 GIPIL-VLGNKRDLPNALD-E----KELIDRMNLCAIQDREICCYSISCKERD----------NIDITLQWLIAHS 87 (92)
Q Consensus 28 ~~p~i-lv~NK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~SA~~~~----------gi~~~~~~l~~~i 87 (92)
++|.+ +++||+|+.+... . .++...+........+.+++++||++|. |+..+++.|...+
T Consensus 127 g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 127 GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 57876 5899999964211 1 1233333211111234679999999975 5778888887654
No 275
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.76 E-value=3.6e-05 Score=51.19 Aligned_cols=51 Identities=22% Similarity=0.185 Sum_probs=31.0
Q ss_pred CCc-EEEEeeCCCCCCC-CC---H----HHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 28 GIP-ILVLGNKRDLPNA-LD---E----KELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 28 ~~p-~ilv~NK~Dl~~~-~~---~----~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
++| ++++.||+|.+.. .+ . +++.+.+.........++++++||.+|+|+.+
T Consensus 144 gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 144 GVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred CCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 555 6789999996421 11 2 23333332211222357899999999999964
No 276
>PRK13351 elongation factor G; Reviewed
Probab=97.76 E-value=0.00022 Score=49.75 Aligned_cols=26 Identities=12% Similarity=-0.059 Sum_probs=22.8
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
++++..||++|.||+.+++.+...+.
T Consensus 253 ~PV~~gSA~~~~Gv~~LLd~I~~~lP 278 (687)
T PRK13351 253 VPVLFGSALKNIGIEPLLDAVVDYLP 278 (687)
T ss_pred EEEEecccCcCccHHHHHHHHHHHCC
Confidence 46788899999999999999998764
No 277
>PRK12740 elongation factor G; Reviewed
Probab=97.72 E-value=0.00053 Score=47.77 Aligned_cols=26 Identities=8% Similarity=0.066 Sum_probs=23.0
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
++++..||++|.|++.+++.+...+.
T Consensus 237 ~Pv~~gSA~~~~Gv~~LLd~i~~~lP 262 (668)
T PRK12740 237 VPVFCGSALKNKGVQRLLDAVVDYLP 262 (668)
T ss_pred EEEEeccccCCccHHHHHHHHHHHCC
Confidence 46888999999999999999998764
No 278
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.64 E-value=8.3e-05 Score=44.25 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=40.1
Q ss_pred CCcEEEEeeCCCCCCCCC---------HHHH----HHhhccC--CcCCCceEEEeeccc--cCCCHHHHHHHHHHhhhhc
Q psy2977 28 GIPILVLGNKRDLPNALD---------EKEL----IDRMNLC--AIQDREICCYSISCK--ERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~---------~~~~----~~~~~~~--~~~~~~~~~~~~SA~--~~~gi~~~~~~l~~~i~~~ 90 (92)
+.|+++|+||+|+..... .+++ .+..... ........+|.+|+. .+.|+..+.+.+...+.+.
T Consensus 107 ~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 107 GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 579999999999832101 1121 1111100 000123468999998 6899999999999988764
Q ss_pred C
Q psy2977 91 T 91 (92)
Q Consensus 91 ~ 91 (92)
+
T Consensus 187 ~ 187 (197)
T cd04104 187 K 187 (197)
T ss_pred H
Confidence 4
No 279
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.63 E-value=0.00011 Score=48.39 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=29.8
Q ss_pred CcEEEEeeCCCCCCCCC--HHHHHHhhcc--CCcCCCceEEEeeccccCCCHHH
Q psy2977 29 IPILVLGNKRDLPNALD--EKELIDRMNL--CAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
.++++++||+|+.+... .+++.+.+.. ........+++++||++|+|+++
T Consensus 134 ~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 134 RHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred CcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 46889999999964221 1122222210 00011245799999999999986
No 280
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.60 E-value=0.00018 Score=48.21 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=47.5
Q ss_pred HHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCC-----cCCCceEEEeeccccC----------CCHHH
Q psy2977 14 RNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCA-----IQDREICCYSISCKER----------DNIDI 78 (92)
Q Consensus 14 ~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~SA~~~----------~gi~~ 78 (92)
+--+.+.+.. +.+.|+|.||+|.|.+.+.+.+.+.+.+.. ..+..++++..||+.| .++..
T Consensus 110 rFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~p 185 (603)
T COG1217 110 RFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAP 185 (603)
T ss_pred hhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhH
Confidence 3345555543 456689999999998776554444433211 1234678999999876 56888
Q ss_pred HHHHHHHhhh
Q psy2977 79 TLQWLIAHSK 88 (92)
Q Consensus 79 ~~~~l~~~i~ 88 (92)
+|+.|.+++.
T Consensus 186 Lfe~I~~hvp 195 (603)
T COG1217 186 LFETILDHVP 195 (603)
T ss_pred HHHHHHHhCC
Confidence 9999988874
No 281
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.60 E-value=3.6e-05 Score=41.89 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=39.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNID 77 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 77 (92)
|+|.++.++++.. |...++.... .+.|.++++||.|+..... +... ....++++||++|.|+.
T Consensus 53 v~~~~~~~s~~~~--~~~~i~~~~k-~dl~~~~~~nk~dl~~~~~---~~~~--------~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 53 CWRVDDRDSADNK--NVPEVLVGNK-SDLPILVGGNRDVLEEERQ---VATE--------EGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEEccCHHHHHHH--hHHHHHhcCC-CCCcEEEEeechhhHhhCc---CCHH--------HHHHHHHHhCCCcchhh
Confidence 3677777777654 6665554322 4688999999999843211 1111 11235789999999984
No 282
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.57 E-value=0.00023 Score=46.86 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=36.8
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH-HHHHHHHhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI-TLQWLIAHS 87 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~-~~~~l~~~i 87 (92)
..+|+++|+||.|+... ...+...... ....++++||+.+.|+++ +.+.+.+.+
T Consensus 216 t~KPvI~VlNK~D~~~~--~~~l~~i~~~-----~~~~vvpISA~~e~~l~~~l~~~i~~~l 270 (396)
T PRK09602 216 ISKPMVIAANKADLPPA--EENIERLKEE-----KYYIVVPTSAEAELALRRAAKAGLIDYI 270 (396)
T ss_pred cCCCEEEEEEchhcccc--hHHHHHHHhc-----CCCcEEEEcchhhhhHHHHHHHhHHhhC
Confidence 45899999999997521 1122222211 234589999999999999 677776654
No 283
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.51 E-value=0.0015 Score=45.86 Aligned_cols=26 Identities=8% Similarity=0.025 Sum_probs=20.6
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
++++..||.+|.|++.+++.|.+.+.
T Consensus 254 ~PV~~gSa~~~~Gv~~LLd~I~~~lP 279 (689)
T TIGR00484 254 FPVLCGSAFKNKGVQLLLDAVVDYLP 279 (689)
T ss_pred EEEEeccccCCccHHHHHHHHHHHCC
Confidence 45677788888888888888887664
No 284
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.50 E-value=4.1e-05 Score=51.28 Aligned_cols=51 Identities=20% Similarity=0.161 Sum_probs=31.2
Q ss_pred CcEEEEeeCCCCCCCCC--HHHHHHhhcc--CCcC-CCceEEEeeccccCCCHHHH
Q psy2977 29 IPILVLGNKRDLPNALD--EKELIDRMNL--CAIQ-DREICCYSISCKERDNIDIT 79 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~--~~~~~~~~~~--~~~~-~~~~~~~~~SA~~~~gi~~~ 79 (92)
.|+++++||+|+.+... ..++.+.+.. .... ....+++++||++|.|++++
T Consensus 161 ~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 161 KHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred CceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 47899999999964211 2223322210 0000 12467999999999999764
No 285
>PLN03127 Elongation factor Tu; Provisional
Probab=97.49 E-value=0.00076 Score=45.09 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=35.4
Q ss_pred CCc-EEEEeeCCCCCCCCC-HH----HHHHhhccCCcCCCceEEEeeccc---cCCC-------HHHHHHHHHHhhh
Q psy2977 28 GIP-ILVLGNKRDLPNALD-EK----ELIDRMNLCAIQDREICCYSISCK---ERDN-------IDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p-~ilv~NK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~SA~---~~~g-------i~~~~~~l~~~i~ 88 (92)
++| +++++||+|+.+... .+ ++.+.+..........+++++||. +|.| +..++++|.+.+.
T Consensus 176 gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 176 GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 578 578899999964211 11 222222111111224678888876 5555 7888888887653
No 286
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.48 E-value=0.0011 Score=45.22 Aligned_cols=26 Identities=12% Similarity=0.002 Sum_probs=21.9
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.+++..||.++.||+.+++.+.+.+.
T Consensus 250 ~PV~~GSA~~n~Gv~~LLd~i~~~~P 275 (527)
T TIGR00503 250 TPVFFGTALGNFGVDHFLDGLLQWAP 275 (527)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCC
Confidence 35688899999999999999988764
No 287
>KOG1490|consensus
Probab=97.47 E-value=0.00017 Score=48.62 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=38.5
Q ss_pred CCCCcEEEEeeCCCCCCCCCHH----HHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHh
Q psy2977 26 LIGIPILVLGNKRDLPNALDEK----ELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAH 86 (92)
Q Consensus 26 ~~~~p~ilv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~ 86 (92)
..++|.|+|+||+|+....+.. ++.+.+. ...+..++++|+.+.+||-++-....+.
T Consensus 279 FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~----~~~~v~v~~tS~~~eegVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 279 FANKVTILVLNKIDAMRPEDLDQKNQELLQTII----DDGNVKVVQTSCVQEEGVMDVRTTACEA 339 (620)
T ss_pred hcCCceEEEeecccccCccccCHHHHHHHHHHH----hccCceEEEecccchhceeeHHHHHHHH
Confidence 4679999999999985433322 2222221 2345789999999999998865544443
No 288
>KOG1144|consensus
Probab=97.44 E-value=0.0003 Score=49.48 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=24.4
Q ss_pred ceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 62 EICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 62 ~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
.+.++++||.+|+||.+++.||.+.-.+
T Consensus 661 ~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 661 TVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred eEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 4679999999999999999999887654
No 289
>PLN03126 Elongation factor Tu; Provisional
Probab=97.40 E-value=0.001 Score=44.79 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=28.1
Q ss_pred CCc-EEEEeeCCCCCCCCC-HH----HHHHhhccCCcCCCceEEEeeccccCCC
Q psy2977 28 GIP-ILVLGNKRDLPNALD-EK----ELIDRMNLCAIQDREICCYSISCKERDN 75 (92)
Q Consensus 28 ~~p-~ilv~NK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~SA~~~~g 75 (92)
++| +++++||+|+.+... .+ ++...+..........+++++||.+|.+
T Consensus 196 gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 196 GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 567 778999999964211 11 2233222111122357899999998853
No 290
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.39 E-value=0.00029 Score=43.38 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=32.6
Q ss_pred CCcEEEEeeCCCCCCCC---------CH-----------H----HHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHH
Q psy2977 28 GIPILVLGNKRDLPNAL---------DE-----------K----ELIDRMNLCAIQDREICCYSISCKERDNIDITLQWL 83 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~---------~~-----------~----~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l 83 (92)
+.|.+.|+||+|+.... +. . .+.+.+. .......++++|+.+++|+++++..+
T Consensus 156 ~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~---~~~~~~~f~pls~~~~~~~~~L~~~i 232 (238)
T PF03029_consen 156 ELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLD---DFGLVIRFIPLSSKDGEGMEELLAAI 232 (238)
T ss_dssp TSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCC---CCSSS---EE-BTTTTTTHHHHHHHH
T ss_pred CCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh---hcCCCceEEEEECCChHHHHHHHHHH
Confidence 68999999999997511 00 1 1111111 01122379999999999999999988
Q ss_pred HHhh
Q psy2977 84 IAHS 87 (92)
Q Consensus 84 ~~~i 87 (92)
-+.+
T Consensus 233 d~a~ 236 (238)
T PF03029_consen 233 DKAN 236 (238)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 291
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00027 Score=46.76 Aligned_cols=56 Identities=14% Similarity=0.039 Sum_probs=38.5
Q ss_pred cEEEEeeCCCCCCCCCHHHHHHhh-ccCCcCCCceEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 30 PILVLGNKRDLPNALDEKELIDRM-NLCAIQDREICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 30 p~ilv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
..++|+||+|..+....++..+.. +.-. -...++|.+||++|+||+++-..|.+..
T Consensus 105 ~giivltk~D~~d~~r~e~~i~~Il~~l~--l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 105 NGIIVLTKADRVDEARIEQKIKQILADLS--LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred ceEEEEeccccccHHHHHHHHHHHHhhcc--cccccccccccccCCCHHHHHHHHHHhh
Confidence 349999999997543333222221 1111 2245679999999999999999999887
No 292
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.29 E-value=0.00026 Score=49.04 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=29.6
Q ss_pred CcEEEEeeCCCCCCCCC--HHHHHHhhcc--CCcCCCceEEEeeccccCCCHHH
Q psy2977 29 IPILVLGNKRDLPNALD--EKELIDRMNL--CAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
.|+++++||+|+.+... .+++...+.. ........+++++||++|.|+++
T Consensus 158 ~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 158 RHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred CeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 57889999999964111 1222222210 00111235689999999999974
No 293
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.24 E-value=0.00032 Score=42.18 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=22.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 41 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 41 (92)
|+|+++..+... ..++..... .++|+++|+||+|+.
T Consensus 101 VvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 101 VVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred EEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 467776544322 233333322 248999999999975
No 294
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.20 E-value=0.0008 Score=39.48 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=13.6
Q ss_pred CCCcEEEEeeCCCCCC
Q psy2977 27 IGIPILVLGNKRDLPN 42 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~ 42 (92)
.++|+++|+||+|+.+
T Consensus 29 ~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 29 GNKKLVLVLNKIDLVP 44 (172)
T ss_pred CCCCEEEEEehhhcCC
Confidence 3589999999999963
No 295
>PRK12739 elongation factor G; Reviewed
Probab=97.16 E-value=0.0044 Score=43.55 Aligned_cols=26 Identities=8% Similarity=-0.044 Sum_probs=22.7
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
++++..||.++.|++.+++.|.+.+.
T Consensus 253 ~Pv~~gSa~~~~Gv~~LLd~I~~~lP 278 (691)
T PRK12739 253 FPVLCGSAFKNKGVQPLLDAVVDYLP 278 (691)
T ss_pred EEEEeccccCCccHHHHHHHHHHHCC
Confidence 46788899999999999999998774
No 296
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.15 E-value=0.002 Score=41.44 Aligned_cols=78 Identities=21% Similarity=0.156 Sum_probs=48.5
Q ss_pred eeCCch--hhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 2 VDAADT--DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 2 ~D~s~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
+|.|.. -+++.-...++++... -..|+++|+||+|+.+....+++...+.. ........+|+..+.+++.+
T Consensus 255 ~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~ 327 (346)
T COG1084 255 FDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLE----EGGEEPLKISATKGCGLDKL 327 (346)
T ss_pred EcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHh----hccccccceeeeehhhHHHH
Confidence 566632 2344444445555433 23899999999999755444555444321 12233567889999999988
Q ss_pred HHHHHHh
Q psy2977 80 LQWLIAH 86 (92)
Q Consensus 80 ~~~l~~~ 86 (92)
-..+...
T Consensus 328 ~~~v~~~ 334 (346)
T COG1084 328 REEVRKT 334 (346)
T ss_pred HHHHHHH
Confidence 7776665
No 297
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.13 E-value=0.00089 Score=32.35 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=17.7
Q ss_pred eeCCch--hhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCC
Q psy2977 2 VDAADT--DKLEASRNELHALIEKPQLIGIPILVLGNKRD 39 (92)
Q Consensus 2 ~D~s~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 39 (92)
+|.|.. -++++-...++++... ..++|+++|+||+|
T Consensus 21 ~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 21 IDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp E-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred EcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 566632 2344433445555432 35799999999998
No 298
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0011 Score=43.79 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=31.3
Q ss_pred CcEEEEeeCCCCCCCCCHH---HHHHhhcc----CCcCCCceEEEeeccccCCCHHH
Q psy2977 29 IPILVLGNKRDLPNALDEK---ELIDRMNL----CAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
..++++.||+|+++ .+.+ ++...+.. ......+.+|++|||.+|.|+.+
T Consensus 146 ~~lIVavNKMD~v~-wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 146 KQLIVAVNKMDLVS-WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred ceEEEEEEcccccc-cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 45789999999985 4432 33332211 11112257899999999999865
No 299
>PRK00007 elongation factor G; Reviewed
Probab=97.02 E-value=0.0081 Score=42.31 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=22.6
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
++++..||.++.|++.+++.+.+.+.
T Consensus 255 ~Pv~~gSa~~~~Gv~~LLd~I~~~lP 280 (693)
T PRK00007 255 VPVLCGSAFKNKGVQPLLDAVVDYLP 280 (693)
T ss_pred EEEEecccccCcCHHHHHHHHHHHCC
Confidence 46778899999999999999998774
No 300
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.92 E-value=0.0033 Score=41.58 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=35.6
Q ss_pred CCcEEEEeeCCCCCCCCCH----HHHHHhhccC--------------------CcCCCceEEEeeccccCCCHHHHHHHH
Q psy2977 28 GIPILVLGNKRDLPNALDE----KELIDRMNLC--------------------AIQDREICCYSISCKERDNIDITLQWL 83 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~----~~~~~~~~~~--------------------~~~~~~~~~~~~SA~~~~gi~~~~~~l 83 (92)
+.|++++.+|+|+.+.... +++...+..- .....-.++|.+||.||+|++-+.+.+
T Consensus 255 ~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 255 ELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred cCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 5899999999999754322 2333322110 001123589999999999988555444
Q ss_pred H
Q psy2977 84 I 84 (92)
Q Consensus 84 ~ 84 (92)
.
T Consensus 335 ~ 335 (527)
T COG5258 335 L 335 (527)
T ss_pred H
Confidence 3
No 301
>KOG1707|consensus
Probab=96.87 E-value=0.0096 Score=41.01 Aligned_cols=76 Identities=20% Similarity=0.279 Sum_probs=49.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC-----CCHHHHHHhhccCCcCCCceEEEeeccccCCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-----LDEKELIDRMNLCAIQDREICCYSISCKERDN 75 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 75 (92)
+||++++.+|+-.....+.... ....|+++|+.|+|+.+. ...+++...+++.. .+.+|.++...
T Consensus 502 ~YDsS~p~sf~~~a~v~~~~~~---~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~-------P~~~S~~~~~s 571 (625)
T KOG1707|consen 502 VYDSSNPRSFEYLAEVYNKYFD---LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP-------PIHISSKTLSS 571 (625)
T ss_pred ecccCCchHHHHHHHHHHHhhh---ccCCceEEEeeccccchhhhccCCChHHHHHhcCCCC-------CeeeccCCCCC
Confidence 5899999998776554443322 257899999999999642 23455555554321 34556664222
Q ss_pred HHHHHHHHHHhh
Q psy2977 76 IDITLQWLIAHS 87 (92)
Q Consensus 76 i~~~~~~l~~~i 87 (92)
.++|..|+.+.
T Consensus 572 -~~lf~kL~~~A 582 (625)
T KOG1707|consen 572 -NELFIKLATMA 582 (625)
T ss_pred -chHHHHHHHhh
Confidence 78888887764
No 302
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.86 E-value=0.0067 Score=38.05 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=24.7
Q ss_pred CCCcEEEEeeCCCCCCCCC---HHHHHHhhccCCcCCCceEEEeeccc
Q psy2977 27 IGIPILVLGNKRDLPNALD---EKELIDRMNLCAIQDREICCYSISCK 71 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~SA~ 71 (92)
.++|+++++||+|+.+... .+++.+.++.. .....+++||.
T Consensus 115 ~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~----~~~~~~Pisa~ 158 (270)
T cd01886 115 YNVPRIAFVNKMDRTGADFFRVVEQIREKLGAN----PVPLQLPIGEE 158 (270)
T ss_pred cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCC----ceEEEeccccC
Confidence 3589999999999975321 34455554422 11235666665
No 303
>KOG0082|consensus
Probab=96.78 E-value=0.011 Score=38.58 Aligned_cols=83 Identities=13% Similarity=0.197 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC-----------------CCHHHHHHhhc-----cCCcCCCceEE
Q psy2977 8 DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-----------------LDEKELIDRMN-----LCAIQDREICC 65 (92)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-----------------~~~~~~~~~~~-----~~~~~~~~~~~ 65 (92)
.++.++...++.+.+++-..+.++++.+||.||-.. .+.++....+. +..-..+.+-+
T Consensus 242 NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~ 321 (354)
T KOG0082|consen 242 NRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYV 321 (354)
T ss_pred hHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceE
Confidence 466777788889988877788999999999998321 11222222111 11111245556
Q ss_pred EeeccccCCCHHHHHHHHHHhhhhc
Q psy2977 66 YSISCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 66 ~~~SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
..++|..-.+|+.+|..+.+.+.++
T Consensus 322 h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 322 HFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred EEEeeccHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999888653
No 304
>KOG0461|consensus
Probab=96.71 E-value=0.0026 Score=41.53 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=39.1
Q ss_pred CcEEEEeeCCCCCCCCC----HHHHHHhhc--cCCc-CCCceEEEeeccccC----CCHHHHHHHHHHhhhh
Q psy2977 29 IPILVLGNKRDLPNALD----EKELIDRMN--LCAI-QDREICCYSISCKER----DNIDITLQWLIAHSKS 89 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~----~~~~~~~~~--~~~~-~~~~~~~~~~SA~~~----~gi~~~~~~l~~~i~~ 89 (92)
...++|+||+|+..+.. .+....... +..- -..+.+++++||+.| ++|.++.+.|...+..
T Consensus 123 ~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 123 KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 46788999999754321 122222211 1110 134578999999999 8999999988888754
No 305
>KOG1191|consensus
Probab=96.69 E-value=0.0046 Score=41.75 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=37.1
Q ss_pred CCcEEEEeeCCCCCCCCCHHH--HHHhhccCCcCCCceE-EEeeccccCCCHHHHHHHHHHhhh
Q psy2977 28 GIPILVLGNKRDLPNALDEKE--LIDRMNLCAIQDREIC-CYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
..|++++.||+|+....+.-. ...+... .. ...++ +.++|++|++|++.+...|.+.+.
T Consensus 389 ~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~-~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 389 KQRIILVANKSDLVSKIPEMTKIPVVYPSA-EG-RSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred ccceEEEechhhccCccccccCCceecccc-cc-CcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 479999999999965322100 0001110 00 11233 455999999999999999988764
No 306
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0022 Score=41.80 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=30.2
Q ss_pred CcEEEEeeCCCCCCCCC--HHHHHHhh-ccC-CcCCCceEEEeeccccCCCHH
Q psy2977 29 IPILVLGNKRDLPNALD--EKELIDRM-NLC-AIQDREICCYSISCKERDNID 77 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~--~~~~~~~~-~~~-~~~~~~~~~~~~SA~~~~gi~ 77 (92)
..+++..||+||.+... .++|...+ .+. .+......++++||+.|.||-
T Consensus 140 rhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 140 RHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred cEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 46788899999986421 22333222 111 112234579999999999974
No 307
>KOG0410|consensus
Probab=96.58 E-value=0.0015 Score=42.24 Aligned_cols=75 Identities=20% Similarity=0.196 Sum_probs=47.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCc----EEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIP----ILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p----~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|+|.|+.-.. +.....+++..+.++.| ++=|-||+|.......++ . ...+.+||++|+|+
T Consensus 264 vvDiShP~ae~q-~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E-----------~--n~~v~isaltgdgl 329 (410)
T KOG0410|consen 264 VVDISHPNAEEQ-RETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE-----------K--NLDVGISALTGDGL 329 (410)
T ss_pred EeecCCccHHHH-HHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc-----------c--CCccccccccCccH
Confidence 578998854332 34455566655555444 455678888653221110 1 11578999999999
Q ss_pred HHHHHHHHHhhhh
Q psy2977 77 DITLQWLIAHSKS 89 (92)
Q Consensus 77 ~~~~~~l~~~i~~ 89 (92)
++++..+-..+..
T Consensus 330 ~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 330 EELLKAEETKVAS 342 (410)
T ss_pred HHHHHHHHHHhhh
Confidence 9999988776543
No 308
>KOG3905|consensus
Probab=96.57 E-value=0.0029 Score=41.02 Aligned_cols=60 Identities=25% Similarity=0.335 Sum_probs=40.4
Q ss_pred CCcEEEEeeCCCCCCCCC---------HHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 28 GIPILVLGNKRDLPNALD---------EKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
++|+++|++|+|...... .+-+...+.... ..++..+|.+|++...|++-+...|+..+.
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFC-Lr~GaaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFC-LRYGAALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHH-HHcCceeEEeecccccchHHHHHHHHHHhc
Confidence 589999999999832111 111222221111 235677999999999999999999987764
No 309
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=96.49 E-value=0.0035 Score=39.23 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=20.1
Q ss_pred CCCcEEEEeeCCCCCCCCC---HHHHHHhhc
Q psy2977 27 IGIPILVLGNKRDLPNALD---EKELIDRMN 54 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~---~~~~~~~~~ 54 (92)
.++|+++++||+|+..... .+++.+.++
T Consensus 122 ~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~ 152 (267)
T cd04169 122 RGIPIITFINKLDREGRDPLELLDEIEEELG 152 (267)
T ss_pred cCCCEEEEEECCccCCCCHHHHHHHHHHHHC
Confidence 3689999999999876533 345666554
No 310
>KOG0458|consensus
Probab=96.21 E-value=0.0042 Score=42.62 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=32.8
Q ss_pred CcEEEEeeCCCCCCCCC---HHHHHHhhc-----cCCcCCCceEEEeeccccCCCHHHH
Q psy2977 29 IPILVLGNKRDLPNALD---EKELIDRMN-----LCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
.-++|+.||+|+.+ .+ .++|...+. ...+....+.|++||+.+|+|+-..
T Consensus 316 ~qlivaiNKmD~V~-Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 316 SQLIVAINKMDLVS-WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ceEEEEeecccccC-ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 46789999999974 23 234443332 1223344678999999999997543
No 311
>KOG0466|consensus
Probab=96.11 E-value=0.0081 Score=38.76 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=39.7
Q ss_pred CcEEEEeeCCCCCCCCCH----HHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 29 IPILVLGNKRDLPNALDE----KELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
+.++++-||+||...... +++..... .. ...+.+++++||.-+.||+-+.+.+.+.+.
T Consensus 180 khiiilQNKiDli~e~~A~eq~e~I~kFi~-~t-~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 180 KHIIILQNKIDLIKESQALEQHEQIQKFIQ-GT-VAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred ceEEEEechhhhhhHHHHHHHHHHHHHHHh-cc-ccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 468999999999743221 12222221 00 112467999999999999999999998774
No 312
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=96.09 E-value=0.0062 Score=37.93 Aligned_cols=17 Identities=41% Similarity=0.557 Sum_probs=14.4
Q ss_pred CCCcEEEEeeCCCCCCC
Q psy2977 27 IGIPILVLGNKRDLPNA 43 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~ 43 (92)
.++|.++++||+|+...
T Consensus 115 ~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 115 AGIPRIIFINKMDRERA 131 (268)
T ss_pred cCCCEEEEEECCccCCC
Confidence 36899999999998754
No 313
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=96.08 E-value=0.011 Score=40.01 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=41.0
Q ss_pred CCcEEEEeeCCCCCCCC------CH---HHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 28 GIPILVLGNKRDLPNAL------DE---KELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
++|++||++|+|..... .. +-+...+... +..++..+|.||++...+++-++..|...+..
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~-cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~ 265 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTF-CLKYGASLIYTSVKEEKNLDLLYKYILHRLYG 265 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHH-HHhcCCeEEEeeccccccHHHHHHHHHHHhcc
Confidence 48999999999974211 11 1222222211 12456789999999999999999888877653
No 314
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.89 E-value=0.0079 Score=38.70 Aligned_cols=49 Identities=22% Similarity=0.124 Sum_probs=28.3
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
+.|.++|+||.||.+....+...+.+.. ..+...+.+|++.+.|...+.
T Consensus 61 ~k~~i~vlNK~DL~~~~~~~~W~~~~~~----~~~~~~~~v~~~~~~~~~~i~ 109 (322)
T COG1161 61 EKPKLLVLNKADLAPKEVTKKWKKYFKK----EEGIKPIFVSAKSRQGGKKIR 109 (322)
T ss_pred cCCcEEEEehhhcCCHHHHHHHHHHHHh----cCCCccEEEEeecccCccchH
Confidence 3566999999999753333344444431 113445666777666555444
No 315
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=95.88 E-value=0.017 Score=35.25 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=21.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 41 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 41 (92)
|+|+++...... ...+..... .++|+++++||+|+.
T Consensus 103 VvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 103 VVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred EEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 467775433322 233333332 257999999999985
No 316
>KOG1424|consensus
Probab=95.78 E-value=0.0091 Score=40.60 Aligned_cols=63 Identities=17% Similarity=0.128 Sum_probs=37.3
Q ss_pred eeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeecccc
Q psy2977 2 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKE 72 (92)
Q Consensus 2 ~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 72 (92)
+|+-+|--|-. .-++.+.... ...+..+|+.||.||..........+++. ..+++++.-||..
T Consensus 182 VDARnPllfr~--~dLe~Yvke~-d~~K~~~LLvNKaDLl~~~qr~aWa~YF~-----~~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 182 VDARNPLLFRS--PDLEDYVKEV-DPSKANVLLVNKADLLPPEQRVAWAEYFR-----QNNIPVVFFSALA 244 (562)
T ss_pred eecCCccccCC--hhHHHHHhcc-ccccceEEEEehhhcCCHHHHHHHHHHHH-----hcCceEEEEeccc
Confidence 56655543322 1244444332 23477899999999975444445555654 3457788888875
No 317
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.68 E-value=0.013 Score=35.77 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=25.1
Q ss_pred CCcE-EEEeeCCCCCCCC-CHHHHHHhhcc--CCcCCCceEEEeeccccCC
Q psy2977 28 GIPI-LVLGNKRDLPNAL-DEKELIDRMNL--CAIQDREICCYSISCKERD 74 (92)
Q Consensus 28 ~~p~-ilv~NK~Dl~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~SA~~~~ 74 (92)
+.|. ++|+||+|+.... ..+++.+.+.. ........+++.+||++.-
T Consensus 132 g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 132 GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 4674 4599999986321 12222222211 0001123579999999873
No 318
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.66 E-value=0.02 Score=37.61 Aligned_cols=80 Identities=21% Similarity=0.248 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC------C--------------CCHHHHHHhhc-----cCCcCC--
Q psy2977 8 DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN------A--------------LDEKELIDRMN-----LCAIQD-- 60 (92)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~------~--------------~~~~~~~~~~~-----~~~~~~-- 60 (92)
.++.++...+..+.+.+-..+.|++|++||.|+.. . .+.+.....+. ......
T Consensus 283 nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~ 362 (389)
T PF00503_consen 283 NRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPS 362 (389)
T ss_dssp BHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTC
T ss_pred HHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCC
Confidence 46778888889998877677899999999999621 1 11122222211 111111
Q ss_pred CceEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 61 REICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 61 ~~~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
+.+.+..|+|.+..++..+|..+.+.|
T Consensus 363 ~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 363 RRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp S-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred cceEEEEeeecccHHHHHHHHHhcCcC
Confidence 456677899999999999998887654
No 319
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=95.66 E-value=0.021 Score=35.55 Aligned_cols=27 Identities=11% Similarity=-0.116 Sum_probs=24.0
Q ss_pred CceEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 61 REICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 61 ~~~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
.-.+++..||+++.|++.+++.+.+.+
T Consensus 239 ~~~pv~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 239 LLVPVLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred CEEEEEEeeCCCCcCHHHHHHHHHHhC
Confidence 346899999999999999999998875
No 320
>KOG2423|consensus
Probab=95.42 E-value=0.046 Score=36.58 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=32.2
Q ss_pred HHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHH
Q psy2977 16 ELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQ 81 (92)
Q Consensus 16 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~ 81 (92)
-+++.+.. ..+.+.+++|+||+||.+..-.......+. +.++.--|-.|-.+..|=..+++
T Consensus 233 ~ve~ylkk-e~phKHli~vLNKvDLVPtwvt~~Wv~~lS----keyPTiAfHAsi~nsfGKgalI~ 293 (572)
T KOG2423|consen 233 HVEEYLKK-EKPHKHLIYVLNKVDLVPTWVTAKWVRHLS----KEYPTIAFHASINNSFGKGALIQ 293 (572)
T ss_pred HHHHHHhh-cCCcceeEEEeeccccccHHHHHHHHHHHh----hhCcceeeehhhcCccchhHHHH
Confidence 35555543 235688999999999975433223333322 22333344555555555443333
No 321
>KOG2484|consensus
Probab=95.10 E-value=0.031 Score=37.09 Aligned_cols=27 Identities=15% Similarity=0.039 Sum_probs=19.0
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRM 53 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~ 53 (92)
+++.+|+|+||+||.+....+....++
T Consensus 176 gnKkLILVLNK~DLVPrEv~e~Wl~YL 202 (435)
T KOG2484|consen 176 GNKKLILVLNKIDLVPREVVEKWLVYL 202 (435)
T ss_pred CCceEEEEeehhccCCHHHHHHHHHHH
Confidence 458899999999997544444444554
No 322
>KOG2485|consensus
Probab=94.82 E-value=0.027 Score=36.20 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=20.2
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhc
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMN 54 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~ 54 (92)
.+|-|||.||+||.+......+.+.++
T Consensus 73 ~k~riiVlNK~DLad~~~~k~~iq~~~ 99 (335)
T KOG2485|consen 73 PKPRIIVLNKMDLADPKEQKKIIQYLE 99 (335)
T ss_pred CCceEEEEecccccCchhhhHHHHHHH
Confidence 578999999999987555555555554
No 323
>KOG1487|consensus
Probab=94.66 E-value=0.04 Score=34.91 Aligned_cols=51 Identities=24% Similarity=0.040 Sum_probs=37.8
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
-+|.+.++||+|-. +.+++.- .....+.+++||-++-|++++++.+.+.+.
T Consensus 231 yVp~iyvLNkIdsI---SiEELdi-------i~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 231 YVPCIYVLNKIDSI---SIEELDI-------IYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred eeeeeeeeccccee---eeeccce-------eeeccceeecccccccchHHHHHHHhhcch
Confidence 48999999999953 3333211 123356789999999999999999887764
No 324
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=94.66 E-value=0.15 Score=34.58 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=19.9
Q ss_pred CCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhc
Q psy2977 24 PQLIGIPILVLGNKRDLPNALDE---KELIDRMN 54 (92)
Q Consensus 24 ~~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~ 54 (92)
..+.++|++-..||.|.....+. +++.+.++
T Consensus 129 crlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~ 162 (528)
T COG4108 129 CRLRDIPIFTFINKLDREGRDPLELLDEIEEELG 162 (528)
T ss_pred HhhcCCceEEEeeccccccCChHHHHHHHHHHhC
Confidence 44578999999999997643332 34444444
No 325
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=94.56 E-value=0.07 Score=33.55 Aligned_cols=28 Identities=7% Similarity=-0.015 Sum_probs=24.4
Q ss_pred CceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 61 REICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 61 ~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.-+++|..||.++.|+..+++.+...+.
T Consensus 241 ~~~PV~~gSa~~~~Gi~~lld~i~~~~p 268 (270)
T cd01886 241 KIVPVLCGSAFKNKGVQPLLDAVVDYLP 268 (270)
T ss_pred cEEEEEeCcCCCCcCHHHHHHHHHHhcC
Confidence 3468999999999999999999988763
No 326
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=94.50 E-value=0.088 Score=34.64 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=26.8
Q ss_pred CCCCcEEEEeeCCCCCCCCC---HHHHHHhhccCCcCCCceEEEeeccc
Q psy2977 26 LIGIPILVLGNKRDLPNALD---EKELIDRMNLCAIQDREICCYSISCK 71 (92)
Q Consensus 26 ~~~~p~ilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~SA~ 71 (92)
+..+|+++++||.|.+.... .+.+.+... ..+..++++||.
T Consensus 204 lt~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~-----~~~~~vV~~sA~ 247 (372)
T COG0012 204 LTAKPMLYVANVSEDDLANLNEYVKRLKELAA-----KENAEVVPVSAA 247 (372)
T ss_pred hhcCCeEEEEECCcccccchhHHHHHHHHHhh-----hcCCcEEEeeHH
Confidence 35799999999999875432 333333321 223568899986
No 327
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=94.38 E-value=0.16 Score=34.38 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=33.3
Q ss_pred HHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeecc--ccCCCHHHHHHHHHH
Q psy2977 15 NELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISC--KERDNIDITLQWLIA 85 (92)
Q Consensus 15 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA--~~~~gi~~~~~~l~~ 85 (92)
.++.++.+ .++|+++++||+|-... ...++.+.+. ...+.+++.+|+ .+.+.|..+++.+.-
T Consensus 171 ~~i~eLk~----~~kPfiivlN~~dp~~~-et~~l~~~l~----eky~vpvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 171 RVIEELKE----LNKPFIILLNSTHPYHP-ETEALRQELE----EKYDVPVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred HHHHHHHh----cCCCEEEEEECcCCCCc-hhHHHHHHHH----HHhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence 34555532 47999999999993211 1222332221 122345566665 445566666665543
No 328
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=94.26 E-value=0.14 Score=33.12 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=37.0
Q ss_pred CCc-EEEEeeCCCCCCCCC-----HHHHHHhhccCCcCCCceEEEeecccc-CCC-------HHHHHHHHHHhhh
Q psy2977 28 GIP-ILVLGNKRDLPNALD-----EKELIDRMNLCAIQDREICCYSISCKE-RDN-------IDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p-~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~SA~~-~~g-------i~~~~~~l~~~i~ 88 (92)
+.| +++++||+|+.+... ..++++.+....+.....+++.-||+. .+| |.++++.+.+.+.
T Consensus 127 Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 127 GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 455 566789999986322 234555555444444567788888863 332 5666666666553
No 329
>KOG0463|consensus
Probab=94.02 E-value=0.4 Score=32.18 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=16.1
Q ss_pred ceEEEeeccccCCCHHHHHH
Q psy2977 62 EICCYSISCKERDNIDITLQ 81 (92)
Q Consensus 62 ~~~~~~~SA~~~~gi~~~~~ 81 (92)
-+++|.+|-.+|+|++-+-.
T Consensus 332 ~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 332 VCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred ccceEEeccccCCChHHHHH
Confidence 46799999999999875533
No 330
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=93.99 E-value=0.21 Score=32.40 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=24.3
Q ss_pred EEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 32 LVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 32 ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
+|++||.|+.++...+.+...+.. .+...+++.+|. .+.+..++
T Consensus 149 ~ivlNK~Dlv~~~~l~~l~~~l~~---lnp~A~i~~~~~-~~~~~~~l 192 (323)
T COG0523 149 VIVLNKTDLVDAEELEALEARLRK---LNPRARIIETSY-GDVDLAEL 192 (323)
T ss_pred EEEEecccCCCHHHHHHHHHHHHH---hCCCCeEEEccc-cCCCHHHh
Confidence 788999999864433333333321 123456777776 33443333
No 331
>PTZ00258 GTP-binding protein; Provisional
Probab=93.86 E-value=0.16 Score=33.76 Aligned_cols=43 Identities=12% Similarity=-0.007 Sum_probs=25.4
Q ss_pred CCCcEEEEeeCC--CC-CCCC-CHHHHHHhhccCCcCCCceEEEeeccccC
Q psy2977 27 IGIPILVLGNKR--DL-PNAL-DEKELIDRMNLCAIQDREICCYSISCKER 73 (92)
Q Consensus 27 ~~~p~ilv~NK~--Dl-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 73 (92)
..+|+++|+||. |+ .... ..+.+.+..+. .....++.+||+..
T Consensus 219 t~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~----~~~~~~v~~sa~~E 265 (390)
T PTZ00258 219 TAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGE----KGGGPIIPYSAEFE 265 (390)
T ss_pred hcCCEEEEEECchhhhcccchHHHHHHHHHHHh----cCCCeEEEeeHHHH
Confidence 468999999999 86 2211 12333333221 11356899998654
No 332
>KOG0085|consensus
Probab=93.73 E-value=0.51 Score=29.67 Aligned_cols=84 Identities=17% Similarity=0.244 Sum_probs=52.7
Q ss_pred chhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhc----------------------cCCcCCCc
Q psy2977 6 DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRMN----------------------LCAIQDRE 62 (92)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-~~~~~~~~~~~----------------------~~~~~~~~ 62 (92)
+..+.++.+..+..++..+=..+.++|+.+||.|+.+. +....+...+. +..-...-
T Consensus 244 nENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKi 323 (359)
T KOG0085|consen 244 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKI 323 (359)
T ss_pred chhhHHHHHHHHHHHhccccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccce
Confidence 45567777777777777766678899999999998542 11111111111 11001111
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
..-..++|.+-+||.-+|..+.+.+.+
T Consensus 324 i~SHfTcATDT~NIRfVFaaVkDtiLq 350 (359)
T KOG0085|consen 324 IYSHFTCATDTENIRFVFAAVKDTILQ 350 (359)
T ss_pred eeeeeeecccchhHHHHHHHHHHHHHH
Confidence 234457889999999999998887754
No 333
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=93.28 E-value=0.11 Score=32.17 Aligned_cols=86 Identities=17% Similarity=0.185 Sum_probs=45.3
Q ss_pred CeeCCchh---hHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHH----HHhhcc--CCcCCCceEEEeeccc
Q psy2977 1 MVDAADTD---KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL----IDRMNL--CAIQDREICCYSISCK 71 (92)
Q Consensus 1 v~D~s~~~---~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~SA~ 71 (92)
|+|+.+.+ .+......+..+.+. .+++.+-++..|+|+.......++ .+.+.. .........++.||-.
T Consensus 83 V~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~ 160 (232)
T PF04670_consen 83 VFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIW 160 (232)
T ss_dssp EEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TT
T ss_pred EEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCc
Confidence 57877333 222223334444433 257899999999998642222211 111110 0001113789999988
Q ss_pred cCCCHHHHHHHHHHhhhh
Q psy2977 72 ERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 72 ~~~gi~~~~~~l~~~i~~ 89 (92)
+ +.+-+++-.+...+..
T Consensus 161 D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 161 D-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp S-THHHHHHHHHHHTTST
T ss_pred C-cHHHHHHHHHHHHHcc
Confidence 7 6899999888887654
No 334
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=92.67 E-value=0.049 Score=29.78 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=13.9
Q ss_pred EeeCCCCCCCC-CHHHHHHhhccCCcCCCceEEEeeccc
Q psy2977 34 LGNKRDLPNAL-DEKELIDRMNLCAIQDREICCYSISCK 71 (92)
Q Consensus 34 v~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~ 71 (92)
++||+|++.+. ..+.+.+.+ ....+++|||.
T Consensus 1 AaNK~D~~~a~~ni~kl~~~~-------~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPAADENIEKLKEKY-------PDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-HHHHHHHHHHH-------TT-EEEEE-HH
T ss_pred CCccccccccHhHHHHHHHhC-------CCCceeeccHH
Confidence 58999986421 233333322 13457777775
No 335
>KOG0705|consensus
Probab=92.55 E-value=0.091 Score=36.52 Aligned_cols=83 Identities=12% Similarity=0.246 Sum_probs=49.9
Q ss_pred eeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCC----CCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHH
Q psy2977 2 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL----PNALDEKELIDRMNLCAIQDREICCYSISCKERDNID 77 (92)
Q Consensus 2 ~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl----~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 77 (92)
|...+.++|+.+.....++-.......+|+++++++.-. ++............ ......+|+++|.+|.+++
T Consensus 103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~----~~krcsy~et~atyGlnv~ 178 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSA----QMKRCSYYETCATYGLNVE 178 (749)
T ss_pred EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHH----hcCccceeecchhhhhhHH
Confidence 344456667666544444433333457899999887332 22222122222211 2345678999999999999
Q ss_pred HHHHHHHHhhh
Q psy2977 78 ITLQWLIAHSK 88 (92)
Q Consensus 78 ~~~~~l~~~i~ 88 (92)
.+|+.+...+.
T Consensus 179 rvf~~~~~k~i 189 (749)
T KOG0705|consen 179 RVFQEVAQKIV 189 (749)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 336
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=92.42 E-value=0.62 Score=32.42 Aligned_cols=68 Identities=15% Similarity=0.079 Sum_probs=38.6
Q ss_pred HHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeec--cccCCCHHHHHHHHHHhhh
Q psy2977 16 ELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSIS--CKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 16 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S--A~~~~gi~~~~~~l~~~i~ 88 (92)
-+.+.++....-++|++|++||.|.......+.+.+.+. ..++++..+. ++-|+|-.++-+.+.+.+.
T Consensus 360 NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~c~-----e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 360 NLERHIENIRKFGVPVVVAINKFVTDTDAEIAALKELCE-----ELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHH-----HcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 344444332235799999999999753323334444432 2233444333 4567787777777766654
No 337
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=92.19 E-value=0.8 Score=28.81 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=36.2
Q ss_pred HHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceE-EEeec-cccCCC---HHHHHHHHHHhhhh
Q psy2977 15 NELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREIC-CYSIS-CKERDN---IDITLQWLIAHSKS 89 (92)
Q Consensus 15 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S-A~~~~g---i~~~~~~l~~~i~~ 89 (92)
.-++++...-+ ...|+.+++||+|+.. ...++...+.... ....+. .++.. ...+.. +++.|+.|...+..
T Consensus 57 ~rL~el~~~lg-~~~PVYvv~Tk~D~l~--GF~ef~~~L~~~~-r~q~lG~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 132 (266)
T PF14331_consen 57 QRLEELQRTLG-VRLPVYVVFTKCDLLP--GFDEFFSDLSEEE-REQVLGFTFPYDEDADGDAWAWFDEEFDELVARLNA 132 (266)
T ss_pred HHHHHHHHHhC-CCCCeEeeeECCCccc--CHHHHHHhCCHHH-HhCCcccccCCccccccchHHHHHHHHHHHHHHHHH
Confidence 33455544322 4799999999999874 3334333332111 011111 11222 233344 77777777766643
No 338
>KOG1143|consensus
Probab=91.38 E-value=1.1 Score=30.16 Aligned_cols=52 Identities=19% Similarity=0.301 Sum_probs=31.1
Q ss_pred CCcEEEEeeCCCCCCCCCHH----HHHHhhccCC---------------------cCCCceEEEeeccccCCCHHHH
Q psy2977 28 GIPILVLGNKRDLPNALDEK----ELIDRMNLCA---------------------IQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~----~~~~~~~~~~---------------------~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
++|++++.+|+|+.+....+ ++...+.... ....-.++|.+|+.+|+|+.-+
T Consensus 303 ~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 303 NIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred CCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 68999999999986542222 2211111000 1112357999999999998744
No 339
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=91.30 E-value=1.3 Score=26.20 Aligned_cols=59 Identities=8% Similarity=0.007 Sum_probs=35.3
Q ss_pred CcEEEEeeCCCCCCCCCHHHH--------HHhhccCCcCCCceEEEe-e--ccccCCCHHHHHHHHHHhhhhc
Q psy2977 29 IPILVLGNKRDLPNALDEKEL--------IDRMNLCAIQDREICCYS-I--SCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~--SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
.++++|+|+.|.......++. ...+.. -...+..|. . |+..+.+++++++.+.+.+.++
T Consensus 117 ~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~---c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 117 DHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK---CGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred hcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH---hCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 578899999996543222222 221111 011222222 2 3678899999999999998864
No 340
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=90.58 E-value=0.39 Score=28.10 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=20.5
Q ss_pred CceEEEeeccccCCCHHHHHHHHHH
Q psy2977 61 REICCYSISCKERDNIDITLQWLIA 85 (92)
Q Consensus 61 ~~~~~~~~SA~~~~gi~~~~~~l~~ 85 (92)
.+++++.+|+++++|++++.+++..
T Consensus 11 ~gy~v~~~S~~~~~g~~~l~~~l~~ 35 (161)
T PF03193_consen 11 LGYPVFFISAKTGEGIEELKELLKG 35 (161)
T ss_dssp TTSEEEE-BTTTTTTHHHHHHHHTT
T ss_pred cCCcEEEEeCCCCcCHHHHHHHhcC
Confidence 3577999999999999999888765
No 341
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=90.54 E-value=0.42 Score=30.03 Aligned_cols=27 Identities=11% Similarity=-0.050 Sum_probs=24.0
Q ss_pred ceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 62 EICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 62 ~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
-++++..||.++.|+..+++.|.+.+.
T Consensus 239 ~~Pv~~gsa~~~~Gv~~Lld~i~~~~P 265 (267)
T cd04169 239 LTPVFFGSALNNFGVQELLDALVDLAP 265 (267)
T ss_pred EEEEEecccccCcCHHHHHHHHHHHCC
Confidence 468999999999999999999988763
No 342
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=90.18 E-value=0.27 Score=31.02 Aligned_cols=15 Identities=20% Similarity=0.166 Sum_probs=13.0
Q ss_pred CCcEEEEeeCCCCCC
Q psy2977 28 GIPILVLGNKRDLPN 42 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~ 42 (92)
.+|+++|+||+|+..
T Consensus 143 ~v~vi~VinK~D~l~ 157 (276)
T cd01850 143 RVNIIPVIAKADTLT 157 (276)
T ss_pred cCCEEEEEECCCcCC
Confidence 589999999999853
No 343
>PRK07560 elongation factor EF-2; Reviewed
Probab=90.17 E-value=1.3 Score=31.90 Aligned_cols=14 Identities=21% Similarity=0.126 Sum_probs=11.8
Q ss_pred CCcEEEEeeCCCCC
Q psy2977 28 GIPILVLGNKRDLP 41 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~ 41 (92)
+.|.++++||+|+.
T Consensus 139 ~~~~iv~iNK~D~~ 152 (731)
T PRK07560 139 RVKPVLFINKVDRL 152 (731)
T ss_pred CCCeEEEEECchhh
Confidence 45789999999986
No 344
>KOG1486|consensus
Probab=90.16 E-value=1.4 Score=28.13 Aligned_cols=51 Identities=24% Similarity=0.165 Sum_probs=38.5
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
-+|.+.|.||+|-. +.+++..... ....+.+|+.-.-|++.+++.+.+.+.
T Consensus 238 Y~~ClYvYnKID~v---s~eevdrlAr-------~PnsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 238 YIKCLYVYNKIDQV---SIEEVDRLAR-------QPNSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEEEEEEeecccee---cHHHHHHHhc-------CCCcEEEEeccccCHHHHHHHHHHHhc
Confidence 37899999999964 6666655432 123467888999999999999988764
No 345
>KOG2486|consensus
Probab=88.96 E-value=0.13 Score=32.84 Aligned_cols=60 Identities=12% Similarity=-0.027 Sum_probs=35.1
Q ss_pred CCCcEEEEeeCCCCCCCC------CHHHHHH-hhccCCc-CCCceEEEeeccccCCCHHHHHHHHHHh
Q psy2977 27 IGIPILVLGNKRDLPNAL------DEKELID-RMNLCAI-QDREICCYSISCKERDNIDITLQWLIAH 86 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~------~~~~~~~-~~~~~~~-~~~~~~~~~~SA~~~~gi~~~~~~l~~~ 86 (92)
.++|+.+|+||+|..... +...+.. ..++... .....+++.+|+.|+.|++++.-.++..
T Consensus 247 ~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 247 NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhhh
Confidence 368999999999974211 1111111 1111100 0112346679999999999987766654
No 346
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=87.85 E-value=1.2 Score=29.43 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=24.0
Q ss_pred CCCCcEEEEeeCCCCC--CC-CCHHHHHHhhccCCcCCCceEEEeeccc
Q psy2977 26 LIGIPILVLGNKRDLP--NA-LDEKELIDRMNLCAIQDREICCYSISCK 71 (92)
Q Consensus 26 ~~~~p~ilv~NK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 71 (92)
+..+|+++++|+.|.. .. ...+.+.+... ..+..++++||.
T Consensus 197 lt~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~-----~~~~~~i~~sa~ 240 (364)
T PRK09601 197 LTAKPVLYVANVDEDDLADGNPYVKKVREIAA-----KEGAEVVVICAK 240 (364)
T ss_pred cccCCeEEEEECCccccccccHHHHHHHHHHH-----HcCCeEEEEEHH
Confidence 3569999999999852 11 11223333221 124568888884
No 347
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=87.60 E-value=4.8 Score=25.12 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=13.3
Q ss_pred CCCcEEEEeeCCCCCC
Q psy2977 27 IGIPILVLGNKRDLPN 42 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~ 42 (92)
...|.++|+||.|...
T Consensus 191 ~~~rti~ViTK~D~~~ 206 (240)
T smart00053 191 QGERTIGVITKLDLMD 206 (240)
T ss_pred cCCcEEEEEECCCCCC
Confidence 3578999999999864
No 348
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=86.60 E-value=1.4 Score=23.58 Aligned_cols=10 Identities=40% Similarity=0.580 Sum_probs=5.5
Q ss_pred CCcEEEEeeC
Q psy2977 28 GIPILVLGNK 37 (92)
Q Consensus 28 ~~p~ilv~NK 37 (92)
..|+++|+||
T Consensus 107 ~~~~i~v~NK 116 (116)
T PF01926_consen 107 KKPIILVLNK 116 (116)
T ss_dssp TSEEEEEEES
T ss_pred CCCEEEEEcC
Confidence 3555555555
No 349
>KOG0459|consensus
Probab=85.94 E-value=2 Score=29.15 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=31.9
Q ss_pred CcEEEEeeCCCCCCCC-CH---HHHHHhhcc----CCc-CCCceEEEeeccccCCCHHHHH
Q psy2977 29 IPILVLGNKRDLPNAL-DE---KELIDRMNL----CAI-QDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~-~~---~~~~~~~~~----~~~-~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
..++++.||+|-|... +. +++.+.+.. ... ......++++|..+|.++.+..
T Consensus 218 ~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 218 KHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred ceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 5689999999976432 22 233332210 000 1234679999999999998754
No 350
>KOG0460|consensus
Probab=84.44 E-value=2.6 Score=28.09 Aligned_cols=59 Identities=20% Similarity=0.124 Sum_probs=34.2
Q ss_pred CcEEEEeeCCCCCCCCC-----HHHHHHhhccCCcCCCceEEEeeccc---cCC----C---HHHHHHHHHHhh
Q psy2977 29 IPILVLGNKRDLPNALD-----EKELIDRMNLCAIQDREICCYSISCK---ERD----N---IDITLQWLIAHS 87 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~SA~---~~~----g---i~~~~~~l~~~i 87 (92)
..+++..||.|+.+... .-++++.+....+..-+.+++.-||+ .|. | |..+++.+-+.+
T Consensus 171 ~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi 244 (449)
T KOG0460|consen 171 KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI 244 (449)
T ss_pred ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence 35778889999974321 12455555544444556788887765 442 2 455555554443
No 351
>PTZ00416 elongation factor 2; Provisional
Probab=83.68 E-value=1 Score=32.89 Aligned_cols=14 Identities=29% Similarity=0.202 Sum_probs=12.7
Q ss_pred CCcEEEEeeCCCCC
Q psy2977 28 GIPILVLGNKRDLP 41 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~ 41 (92)
++|+++++||+|+.
T Consensus 144 ~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 144 RIRPVLFINKVDRA 157 (836)
T ss_pred CCCEEEEEEChhhh
Confidence 57999999999986
No 352
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=83.24 E-value=3.8 Score=28.07 Aligned_cols=54 Identities=20% Similarity=0.466 Sum_probs=32.0
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeecc--ccCCCHHHHHHHHHH
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISC--KERDNIDITLQWLIA 85 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA--~~~~gi~~~~~~l~~ 85 (92)
-++|+++++|=.+ |......++.+.+. .+++.+++++++ .+.+.|..+++.+.-
T Consensus 179 igKPFvillNs~~-P~s~et~~L~~eL~----ekY~vpVlpvnc~~l~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 179 IGKPFVILLNSTK-PYSEETQELAEELE----EKYDVPVLPVNCEQLREEDITRILEEVLY 234 (492)
T ss_pred hCCCEEEEEeCCC-CCCHHHHHHHHHHH----HHhCCcEEEeehHHcCHHHHHHHHHHHHh
Confidence 3689999999877 43333334444443 245667777665 345556666555443
No 353
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=82.55 E-value=2.1 Score=31.37 Aligned_cols=15 Identities=27% Similarity=0.014 Sum_probs=13.2
Q ss_pred CCCcEEEEeeCCCCC
Q psy2977 27 IGIPILVLGNKRDLP 41 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~ 41 (92)
.++|+++++||+|++
T Consensus 149 ~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 149 ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCCEEEEEECCccc
Confidence 368999999999986
No 354
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=81.17 E-value=1 Score=26.35 Aligned_cols=36 Identities=33% Similarity=0.380 Sum_probs=18.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 42 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 42 (92)
|+|+.+..........+...+...+ ++++||+|+.+
T Consensus 120 vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~ 155 (178)
T PF02492_consen 120 VVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVS 155 (178)
T ss_dssp EEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHH
T ss_pred EeccccccccccchhhhhhcchhcC------EEEEeccccCC
Confidence 3566543333333333444443322 78899999864
No 355
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=80.82 E-value=3.1 Score=23.29 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=39.1
Q ss_pred cEEEEeeCCCCCCCC--C---------HHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhhc
Q psy2977 30 PILVLGNKRDLPNAL--D---------EKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 30 p~ilv~NK~Dl~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
-++|++.|.+-.... + ..++.+.++ +....++++.+||-.++.+.+.+....+.+++-
T Consensus 56 GV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elg---ie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~l 124 (132)
T COG1908 56 GVLVAGCKIGECHYISGNYKAKRRMELLKELLKELG---IEPERVRVLWISAAEGEKFAETINEFVERIKEL 124 (132)
T ss_pred eEEEecccccceeeeccchHHHHHHHHHHHHHHHhC---CCcceEEEEEEehhhHHHHHHHHHHHHHHHHHh
Confidence 468888887743211 1 112233333 234468899999999999999999999888753
No 356
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=80.07 E-value=2 Score=24.76 Aligned_cols=9 Identities=56% Similarity=0.593 Sum_probs=5.7
Q ss_pred EEEeeCCCC
Q psy2977 32 LVLGNKRDL 40 (92)
Q Consensus 32 ilv~NK~Dl 40 (92)
++++||+|+
T Consensus 150 ~ivlnk~dl 158 (158)
T cd03112 150 RILLNKTDL 158 (158)
T ss_pred EEEEecccC
Confidence 456777764
No 357
>KOG1249|consensus
Probab=79.49 E-value=1.9 Score=30.02 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=34.2
Q ss_pred EEEEeeCCCCCCCCCHHHHHHhhc----cCCcC-----C----C-ceEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 31 ILVLGNKRDLPNALDEKELIDRMN----LCAIQ-----D----R-EICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 31 ~ilv~NK~Dl~~~~~~~~~~~~~~----~~~~~-----~----~-~~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
+++.+||.|+.......-+...+. -...+ + . ..+...+||++|.|+++++-.|.+..
T Consensus 140 ~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~ 210 (572)
T KOG1249|consen 140 LFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDIV 210 (572)
T ss_pred eEeeccccccccccccchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhhcccHHHHHHHhhhee
Confidence 699999999864322111222211 00000 0 0 12467799999999999998887654
No 358
>KOG3886|consensus
Probab=78.88 E-value=10 Score=24.03 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=27.3
Q ss_pred CeeCCchh---hHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC
Q psy2977 1 MVDAADTD---KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA 43 (92)
Q Consensus 1 v~D~s~~~---~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 43 (92)
|+|++..+ .++....-++.++++ .+...+.....|+|+...
T Consensus 88 vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 88 VFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred eeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhccc
Confidence 46776542 344444557777765 356788899999999743
No 359
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=77.88 E-value=2.7 Score=26.70 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=22.4
Q ss_pred CCCcEEEEeeCCC--CCCCCC-HHHHHHhhccCCcCCCceEEEeeccc
Q psy2977 27 IGIPILVLGNKRD--LPNALD-EKELIDRMNLCAIQDREICCYSISCK 71 (92)
Q Consensus 27 ~~~p~ilv~NK~D--l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~ 71 (92)
..+|+++++|+.| +..... ...+.... ...+..++++||+
T Consensus 194 t~KP~i~v~N~~e~d~~~~~~~~~~~~~~~-----~~~~~~~i~~sa~ 236 (274)
T cd01900 194 TAKPVLYVANVSEDDLANGNNKVLKVREIA-----AKEGAEVIPISAK 236 (274)
T ss_pred hcCCceeecccCHHHhccccHHHHHHHHHH-----hcCCCeEEEeeHH
Confidence 4589999999988 332111 11112211 1234568899985
No 360
>KOG0099|consensus
Probab=73.30 E-value=2.3 Score=27.39 Aligned_cols=25 Identities=8% Similarity=-0.116 Sum_probs=19.8
Q ss_pred EEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 65 CYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 65 ~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
...+.|..-++|..+|.-..+.+.+
T Consensus 346 pHFTcAvDTenIrrVFnDcrdiIqr 370 (379)
T KOG0099|consen 346 PHFTCAVDTENIRRVFNDCRDIIQR 370 (379)
T ss_pred cceeEeechHHHHHHHHHHHHHHHH
Confidence 4567888889999999888777653
No 361
>KOG0468|consensus
Probab=72.77 E-value=2.8 Score=30.41 Aligned_cols=14 Identities=43% Similarity=0.491 Sum_probs=12.3
Q ss_pred CCCcEEEEeeCCCC
Q psy2977 27 IGIPILVLGNKRDL 40 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl 40 (92)
.+.|+++|+||+|.
T Consensus 248 ~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 248 NRLPIVVVINKVDR 261 (971)
T ss_pred ccCcEEEEEehhHH
Confidence 36899999999995
No 362
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=72.52 E-value=11 Score=27.45 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=19.8
Q ss_pred CCCcEEEEeeCCCCCCC---CCHHHHHHhhc
Q psy2977 27 IGIPILVLGNKRDLPNA---LDEKELIDRMN 54 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~---~~~~~~~~~~~ 54 (92)
.++|.+++.||+|.... ...+++...+.
T Consensus 127 ~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~ 157 (697)
T COG0480 127 YGVPRILFVNKMDRLGADFYLVVEQLKERLG 157 (697)
T ss_pred cCCCeEEEEECccccccChhhhHHHHHHHhC
Confidence 36899999999998653 23455665554
No 363
>KOG3354|consensus
Probab=72.36 E-value=17 Score=21.73 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=22.7
Q ss_pred EEEeeccccCCCHHHHHHHHHHhhhhc
Q psy2977 64 CCYSISCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 64 ~~~~~SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
.++.+|+.+ .++++.++.+.+++..+
T Consensus 164 div~isv~~-~~~e~iv~tI~k~~~~~ 189 (191)
T KOG3354|consen 164 DIVTISVKT-YSVEEIVDTIVKMVALN 189 (191)
T ss_pred ceEEEeecc-CCHHHHHHHHHHHHHhh
Confidence 589999999 99999999999887653
No 364
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=71.64 E-value=8 Score=25.90 Aligned_cols=80 Identities=16% Similarity=0.244 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCC---------CCCCCHH----HHHHhhccCCcCC---CceEEEeeccc
Q psy2977 8 DKLEASRNELHALIEKPQLIGIPILVLGNKRDL---------PNALDEK----ELIDRMNLCAIQD---REICCYSISCK 71 (92)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl---------~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~SA~ 71 (92)
++|.....++-..++. .++|+.+|-+|+|. +...+.+ ++++.+. ..+.. ...++|.+|+.
T Consensus 124 ~rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~-~~L~k~gv~~P~VFLVS~~ 199 (376)
T PF05049_consen 124 ERFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCL-ENLQKAGVSEPQVFLVSSF 199 (376)
T ss_dssp SS--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHH-HHHHCTT-SS--EEEB-TT
T ss_pred CCCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHH-HHHHHcCCCcCceEEEeCC
Confidence 3555555555555543 36899999999995 1122222 2222211 11111 23568999987
Q ss_pred c--CCCHHHHHHHHHHhhhhcC
Q psy2977 72 E--RDNIDITLQWLIAHSKSHT 91 (92)
Q Consensus 72 ~--~~gi~~~~~~l~~~i~~~~ 91 (92)
. ..+...+.+.|.+.+...+
T Consensus 200 dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 200 DLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp TTTSTTHHHHHHHHHHHS-GGG
T ss_pred CcccCChHHHHHHHHHHhHHHH
Confidence 5 4568888899988876654
No 365
>KOG1143|consensus
Probab=70.61 E-value=5.6 Score=27.00 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=30.7
Q ss_pred CCCcEEEEeeCCCCCCCCCHH--HHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEK--ELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
+...+++|.--.-.... ..+ .+...+....+ .-+-.+--...+|++...+.|.+.+.+
T Consensus 275 Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL~iPfF----vlvtK~Dl~~~~~~~~tv~~l~nll~~ 334 (591)
T KOG1143|consen 275 PHFACLVVSADRGITWT-TREHLGLIAALNIPFF----VLVTKMDLVDRQGLKKTVKDLSNLLAK 334 (591)
T ss_pred CceEEEEEEcCCCCccc-cHHHHHHHHHhCCCeE----EEEEeeccccchhHHHHHHHHHHHHhh
Confidence 44556666543333221 222 35667774311 112223334678888888888877764
No 366
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=70.37 E-value=4.8 Score=19.69 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=13.9
Q ss_pred eccccCCCHHHHHHHHHHh
Q psy2977 68 ISCKERDNIDITLQWLIAH 86 (92)
Q Consensus 68 ~SA~~~~gi~~~~~~l~~~ 86 (92)
-||++|-||.|.++.-.+.
T Consensus 43 etAknGgNvKEvme~~lr~ 61 (71)
T PF07764_consen 43 ETAKNGGNVKEVMEQALRE 61 (71)
T ss_dssp HHHHSSS-HHHHHHHHHHH
T ss_pred eecccCCCHHHHHHHHHHH
Confidence 4899999999998854443
No 367
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=69.64 E-value=3.2 Score=27.17 Aligned_cols=21 Identities=33% Similarity=0.300 Sum_probs=13.8
Q ss_pred EEEeeCCCCCCCCCHHHHHHh
Q psy2977 32 LVLGNKRDLPNALDEKELIDR 52 (92)
Q Consensus 32 ilv~NK~Dl~~~~~~~~~~~~ 52 (92)
+|++||+|+.+....+.+.+.
T Consensus 177 ~IvlnK~Dl~~~~~l~~~~~~ 197 (341)
T TIGR02475 177 LVILNKADLLDAAGLARVRAE 197 (341)
T ss_pred EEEEeccccCCHHHHHHHHHH
Confidence 788999999754333444443
No 368
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=69.00 E-value=22 Score=27.43 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=18.9
Q ss_pred HHHHHhhcCCCCCCCcEEEEeeCCCCCC
Q psy2977 15 NELHALIEKPQLIGIPILVLGNKRDLPN 42 (92)
Q Consensus 15 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 42 (92)
..+.++...-+ ...|+.++++|+|+..
T Consensus 231 ~rl~el~~~lg-~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 231 QRLQELREQLG-ARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHhC-CCCCEEEEEecchhhc
Confidence 44555544332 4799999999999863
No 369
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=68.34 E-value=7.4 Score=28.15 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=12.5
Q ss_pred CCcEEEEeeCCCCCC
Q psy2977 28 GIPILVLGNKRDLPN 42 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~ 42 (92)
+.|.++++||+|...
T Consensus 138 ~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 138 NVKPVLFINKVDRLI 152 (720)
T ss_pred CCCEEEEEEChhccc
Confidence 468899999999863
No 370
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=68.05 E-value=9.9 Score=24.02 Aligned_cols=35 Identities=29% Similarity=0.248 Sum_probs=20.3
Q ss_pred eeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCC
Q psy2977 2 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 40 (92)
Q Consensus 2 ~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 40 (92)
+|.| ..++..+. -+.++-+.. .=.++.+|+||.|-
T Consensus 163 vDpS-~~sl~tae-ri~~L~~el--g~k~i~~V~NKv~e 197 (255)
T COG3640 163 VDPS-YKSLRTAE-RIKELAEEL--GIKRIFVVLNKVDE 197 (255)
T ss_pred eCCc-HHHHHHHH-HHHHHHHHh--CCceEEEEEeeccc
Confidence 4554 33454443 345554332 23789999999994
No 371
>KOG4271|consensus
Probab=65.80 E-value=7.4 Score=29.18 Aligned_cols=29 Identities=10% Similarity=0.104 Sum_probs=25.6
Q ss_pred ceEEEeeccccCCCHHHHHHHHHHhhhhc
Q psy2977 62 EICCYSISCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 62 ~~~~~~~SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
+.+++++|+..+.||+-+|-+|++++.+.
T Consensus 3 ~l~~vetss~~nvnve~~f~tl~~l~~ks 31 (1100)
T KOG4271|consen 3 NLPVVETSSVKNVNVEYLFGTLVQLCDKS 31 (1100)
T ss_pred CCCceeecccccccHHHHHHHHHHHHHhh
Confidence 46789999999999999999999998653
No 372
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=62.60 E-value=31 Score=20.67 Aligned_cols=82 Identities=10% Similarity=0.020 Sum_probs=46.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCC-CCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP-NALDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
++|.++..++..+...+..+-..... ++-.+++-|=.... ......++.+... .+..+++.+--.+.+|...+
T Consensus 71 vinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~-----~y~~plL~~~le~~~~~~~l 144 (176)
T PF11111_consen 71 VINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAA-----TYNSPLLFADLENEEGRTSL 144 (176)
T ss_pred EEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHH-----HhCCCEEEeecccchHHHHH
Confidence 46777777888777766666443333 34334444422221 2345555555432 33456666666677777777
Q ss_pred HHHHHHhhh
Q psy2977 80 LQWLIAHSK 88 (92)
Q Consensus 80 ~~~l~~~i~ 88 (92)
-+.|.+.++
T Consensus 145 AqRLL~~lq 153 (176)
T PF11111_consen 145 AQRLLRMLQ 153 (176)
T ss_pred HHHHHHHHH
Confidence 777766654
No 373
>KOG0465|consensus
Probab=62.08 E-value=10 Score=27.29 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=26.4
Q ss_pred cCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 58 IQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 58 ~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
+.....+++.-||..+.||+.+++.+.+.+.
T Consensus 278 i~r~fvPVl~GSAlKNkGVQPlLDAVvdYLP 308 (721)
T KOG0465|consen 278 IKRSFVPVLCGSALKNKGVQPLLDAVVDYLP 308 (721)
T ss_pred hhcceeeEEechhhcccCcchHHHHHHHhCC
Confidence 3345678999999999999999999999874
No 374
>KOG0463|consensus
Probab=59.07 E-value=8.6 Score=26.19 Aligned_cols=18 Identities=28% Similarity=0.432 Sum_probs=14.9
Q ss_pred CCCcEEEEeeCCCCCCCC
Q psy2977 27 IGIPILVLGNKRDLPNAL 44 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~ 44 (92)
..+|+.+|.+|+|+.++.
T Consensus 272 L~VPVfvVVTKIDMCPAN 289 (641)
T KOG0463|consen 272 LHVPVFVVVTKIDMCPAN 289 (641)
T ss_pred hcCcEEEEEEeeccCcHH
Confidence 368999999999997553
No 375
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=54.10 E-value=65 Score=23.12 Aligned_cols=59 Identities=10% Similarity=-0.105 Sum_probs=33.7
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
-++|+++++|+-.-......+.+.+.... ......+...=|+-|+|-.++-+.+.+.+.
T Consensus 400 fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~~---~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e 458 (587)
T PRK13507 400 SGINPVVCINAFYTDTHAEIAIVRRLAEQ---AGARVAVSRHWEKGGEGALELADAVIDACN 458 (587)
T ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEechhhccchhHHHHHHHHHHHhh
Confidence 47999999999654322222233333321 111222333334678898888888877665
No 376
>KOG4146|consensus
Probab=52.78 E-value=35 Score=18.25 Aligned_cols=36 Identities=25% Similarity=0.172 Sum_probs=19.8
Q ss_pred CcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccC
Q psy2977 29 IPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKER 73 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 73 (92)
.-++++.|++|= ++...... ....+-.++.+|...|
T Consensus 65 pGii~lINd~DW-------Ellekedy--~ledgD~ivfiSTlHG 100 (101)
T KOG4146|consen 65 PGIIVLINDMDW-------ELLEKEDY--PLEDGDHIVFISTLHG 100 (101)
T ss_pred CcEEEEEeccch-------hhhccccc--CcccCCEEEEEEeccC
Confidence 347888999993 12111110 1123456888887765
No 377
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=52.35 E-value=13 Score=24.17 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=9.2
Q ss_pred EEEeeCCCCCC
Q psy2977 32 LVLGNKRDLPN 42 (92)
Q Consensus 32 ilv~NK~Dl~~ 42 (92)
+|++||+|+.+
T Consensus 154 ~IvlnK~Dl~~ 164 (318)
T PRK11537 154 RILLTKTDVAG 164 (318)
T ss_pred EEEEeccccCC
Confidence 78899999864
No 378
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=52.15 E-value=58 Score=23.05 Aligned_cols=59 Identities=10% Similarity=0.014 Sum_probs=33.7
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
-+.|+++++|+---......+.+.+.... ......+...=++-|+|-.++-+.+.+.+.
T Consensus 355 fg~p~VVaiN~F~~Dt~~Ei~~v~~~~~~---~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e 413 (524)
T cd00477 355 FGVPVVVAINKFSTDTDAELALVRKLAEE---AGAFVAVSEHWAEGGKGAVELAEAVIEACE 413 (524)
T ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHHH---cCCCEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence 47899999999663222122233333221 111222333345678898888888877665
No 379
>KOG1491|consensus
Probab=51.92 E-value=30 Score=23.28 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=14.2
Q ss_pred CCCCcEEEEeeCCCCCC
Q psy2977 26 LIGIPILVLGNKRDLPN 42 (92)
Q Consensus 26 ~~~~p~ilv~NK~Dl~~ 42 (92)
+..+|+++++|++|.+.
T Consensus 222 Lt~kP~Vyl~N~se~dy 238 (391)
T KOG1491|consen 222 LTAKPTVYLLNLSEHDY 238 (391)
T ss_pred hhcCceEEEEecCcchh
Confidence 45689999999999764
No 380
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=48.22 E-value=31 Score=20.15 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=21.9
Q ss_pred chhhHHHHHHHHHHhhcCCCCCCCcEEEEeeC
Q psy2977 6 DTDKLEASRNELHALIEKPQLIGIPILVLGNK 37 (92)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK 37 (92)
-|.+++.-.+|+.+.. +-+..-.+++|+||
T Consensus 95 hp~s~~dK~eWl~E~F--PFi~~qn~vfCgnK 124 (180)
T COG4502 95 HPKSCEDKGEWLKEKF--PFISYQNIVFCGNK 124 (180)
T ss_pred CchhHHHHHHHHHHHC--CCCChhhEEEecCC
Confidence 3677877778988865 44455678999997
No 381
>KOG0447|consensus
Probab=47.86 E-value=61 Score=23.59 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=24.2
Q ss_pred HHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhc
Q psy2977 17 LHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMN 54 (92)
Q Consensus 17 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~ 54 (92)
.-.+....+..+..-|+|++|.|+.+. .+.+.+.+.+.
T Consensus 468 VTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 468 VTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred HHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 334444334446677999999999642 35667776654
No 382
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=45.99 E-value=42 Score=17.12 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=21.3
Q ss_pred ceEEEeeccccCCCHHHHHHHHHHhhhhc
Q psy2977 62 EICCYSISCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 62 ~~~~~~~SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
...+..+-+-.|.+++++++.+.+..++.
T Consensus 13 ei~yl~iv~~~~~d~d~Al~eM~e~A~~l 41 (74)
T TIGR03884 13 QLYYLGIVSTESDNVDEIVENLREKVKAK 41 (74)
T ss_pred EEEEEEEEEEecCCHHHHHHHHHHHHHHc
Confidence 34455555577789999999998887764
No 383
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=45.94 E-value=1.1e+02 Score=22.01 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=33.6
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEe--eccccCCCHHHHHHHHHHhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYS--ISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~SA~~~~gi~~~~~~l~~~i~ 88 (92)
-++|+++++|+---......+.+.+... ......+.. .=|+-|+|-.++-+.+.+.+.
T Consensus 392 fg~pvVVaiN~F~~Dt~~Ei~~~~~~~~----~~~~~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 451 (578)
T PRK13506 392 YGLPVVVAINRFPTDTDEELEWLKEAVL----LTGAFGCEISEAFAQGGEGATALAQAVVRACE 451 (578)
T ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHH----HcCCCcEEEechhhccchhHHHHHHHHHHHhh
Confidence 4799999999865321112223333332 112233333 334678898888888877665
No 384
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=45.06 E-value=43 Score=23.83 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=30.5
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeec--cccCCCHHHHHHHHHHhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSIS--CKERDNIDITLQWLIAHS 87 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S--A~~~~gi~~~~~~l~~~i 87 (92)
-++|++|++|+---. +.+|+....... ...+..+..+. |+-|+|-.++-+.+.+.+
T Consensus 370 fGvpvVVAIN~F~tD---T~aEi~~I~~~~--~~~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~ 427 (557)
T PF01268_consen 370 FGVPVVVAINRFPTD---TDAEIELIRELC--EELGVRAAVSEHWAKGGEGAVELAEAVVEAC 427 (557)
T ss_dssp TT--EEEEEE--TTS----HHHHHHHHHHC--CCCCEEEEEC-HHHHGGGGCHHHHHHHHHH-
T ss_pred cCCCeEEEecCCCCC---CHHHHHHHHHHH--HhCCCCEEEechhhcccccHHHHHHHHHHHh
Confidence 479999999985432 344443322222 23455544444 356899999999888887
No 385
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=44.16 E-value=40 Score=18.74 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=26.2
Q ss_pred CCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 59 QDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 59 ~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
....+.+..+|+-.+.++-+.+..+.+.+++
T Consensus 92 ~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~ 122 (124)
T PF02662_consen 92 EPERVRLYWISAPEGKRFAEIVNEFTERIKE 122 (124)
T ss_pred ChhHeEEEEeCcccHHHHHHHHHHHHHHHHH
Confidence 3345789999999999999999999988875
No 386
>PRK14974 cell division protein FtsY; Provisional
Probab=43.05 E-value=39 Score=22.28 Aligned_cols=41 Identities=10% Similarity=-0.166 Sum_probs=22.5
Q ss_pred EEEEeeCCCCCCCCCH-HHHHHhhccCCcCCCceEEEeeccccCCCHHHHHH
Q psy2977 31 ILVLGNKRDLPNALDE-KELIDRMNLCAIQDREICCYSISCKERDNIDITLQ 81 (92)
Q Consensus 31 ~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~ 81 (92)
--+++||.|....... -.+... .+.++..++ +|++++++..
T Consensus 282 ~giIlTKlD~~~~~G~~ls~~~~--------~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 282 DGVILTKVDADAKGGAALSIAYV--------IGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CEEEEeeecCCCCccHHHHHHHH--------HCcCEEEEe--CCCChhhccc
Confidence 3667889997533221 111111 134455555 8999988754
No 387
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=42.44 E-value=11 Score=19.25 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=17.7
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhc
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMN 54 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~ 54 (92)
+..++++.||.|.+...+.....+.++
T Consensus 20 ~~tVmVilN~n~~~~~ldl~ry~E~l~ 46 (78)
T PF10438_consen 20 GKTVMVILNKNDKEQTLDLKRYAEVLG 46 (78)
T ss_dssp SEEEEEEEE-SSS-EEEEGGGGHHHHT
T ss_pred CCEEEEEEcCCCCCeEEcHHHHHHhhC
Confidence 567899999999876556555555543
No 388
>PF08103 Antimicrobial_8: Uperin family; InterPro: IPR012527 This family consists of the uperin family of antimicrobial peptides. Uperin is a wide-spectrum antibiotic peptide isolated from the Australian toadlet, Uperoleia mjobergii. Being only 17 amino acid residues long, it is smaller than most other wide-spectrum antibiotic peptides isolated from amphibians. Uperin adopts a well-defined amphipathic alpha-helix with distinct hydrophilic and hydrophobic faces [].; GO: 0005576 extracellular region
Probab=42.32 E-value=21 Score=12.67 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHhhhh
Q psy2977 75 NIDITLQWLIAHSKS 89 (92)
Q Consensus 75 gi~~~~~~l~~~i~~ 89 (92)
|+-++|..++..+++
T Consensus 1 GVgd~~rKivs~iKN 15 (17)
T PF08103_consen 1 GVGDAIRKIVSVIKN 15 (17)
T ss_pred ChHHHHHHHHHHHHh
Confidence 567778877776653
No 389
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=41.11 E-value=19 Score=20.51 Aligned_cols=9 Identities=44% Similarity=0.446 Sum_probs=6.6
Q ss_pred EEEEeeCCC
Q psy2977 31 ILVLGNKRD 39 (92)
Q Consensus 31 ~ilv~NK~D 39 (92)
=+++.||+|
T Consensus 140 ~~~~~~k~~ 148 (148)
T cd03114 140 DIVVVNKAD 148 (148)
T ss_pred CEEEEeCCC
Confidence 367788877
No 390
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=39.72 E-value=61 Score=19.95 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCcEEEEeeC
Q psy2977 10 LEASRNELHALIEKPQLIGIPILVLGNK 37 (92)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~ilv~NK 37 (92)
+.++...+...+.+.+ .+.|+||++-=
T Consensus 77 y~DV~~AF~~yL~~~n-~GRPfILaGHS 103 (207)
T PF11288_consen 77 YSDVRAAFDYYLANYN-NGRPFILAGHS 103 (207)
T ss_pred HHHHHHHHHHHHHhcC-CCCCEEEEEeC
Confidence 4455666777777643 57899999864
No 391
>PF11524 SeleniumBinding: Selenium binding protein; InterPro: IPR021603 Selenium is an important nutrient which needs to be regulated since lack of the nutrient leads to cell abnormalities and high concentrations are toxic.SeBP regulates the level of free selenium in the cell by sequestering the nutrient during transport. SeBP acts as a pentamer and delivers the selenium to the selenophosphate synthetase enzyme []. Each subunit is composed of an alpha helix on top of a four stranded twisted ss sheet, stabilised by hydrogen bonds []. members of this entry are restricted to the archaeal Methanococcales.; PDB: 2JZ7_D.
Probab=38.38 E-value=58 Score=16.73 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=17.3
Q ss_pred eccccCCCHHHHHHHHHHhhhhcC
Q psy2977 68 ISCKERDNIDITLQWLIAHSKSHT 91 (92)
Q Consensus 68 ~SA~~~~gi~~~~~~l~~~i~~~~ 91 (92)
+|+... |+++++..|.+..+.+.
T Consensus 26 vS~~~e-nvd~li~~lee~vk~k~ 48 (81)
T PF11524_consen 26 VSEASE-NVDELIKKLEEKVKAKG 48 (81)
T ss_dssp EEEBSS-SHHHHHHHHHHHHHHTT
T ss_pred HHHHHh-hHHHHHHHHHHHHHhCC
Confidence 444444 99999999999887654
No 392
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=36.56 E-value=36 Score=22.22 Aligned_cols=41 Identities=17% Similarity=-0.066 Sum_probs=22.5
Q ss_pred cEEEEeeCCCCCCCCC-HHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 30 PILVLGNKRDLPNALD-EKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 30 p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
+--+++||.|-..... .-.+... .+.++..++ +|++++++-
T Consensus 261 ~~giIlTKlD~t~~~G~~l~~~~~--------~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 261 LTGIILTKLDGTAKGGVVFAIADE--------LGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCEEEEECCCCCCCccHHHHHHHH--------HCCCEEEEe--CCCChhhCc
Confidence 3467889999543221 1112221 134555665 899987763
No 393
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=36.47 E-value=45 Score=22.11 Aligned_cols=41 Identities=27% Similarity=0.388 Sum_probs=25.4
Q ss_pred CchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhc
Q psy2977 5 ADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMN 54 (92)
Q Consensus 5 s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~ 54 (92)
|+| .|+-.++.+..+++. ++.++|++|. ++++..++-..+.
T Consensus 141 TNP-PFSLFrEyv~~Li~~----~KkFlIIGN~----NaiTYkeiFplik 181 (336)
T PF13651_consen 141 TNP-PFSLFREYVAQLIEY----DKKFLIIGNI----NAITYKEIFPLIK 181 (336)
T ss_pred eCC-CcHHHHHHHHHHHHh----CCCEEEEecc----ccccHHHHHHHHh
Confidence 444 455555666666654 5789999997 3445566655443
No 394
>KOG2535|consensus
Probab=35.81 E-value=71 Score=21.69 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=31.0
Q ss_pred CCCCCC---CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 38 RDLPNA---LDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 38 ~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
-|||+. .+.+++.+.++-..+...+..++++=...|.|+-|+.
T Consensus 294 PdLPNVg~eRDieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELW 339 (554)
T KOG2535|consen 294 PDLPNVGMERDIEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELW 339 (554)
T ss_pred CCCCCCchhhhHHHHHHHhcCcCcCCCcceecceEEEecccHHHHH
Confidence 366652 3556777777766666667788898888999988774
No 395
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=35.38 E-value=38 Score=14.22 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=8.9
Q ss_pred cCCCHHHHHHHH
Q psy2977 72 ERDNIDITLQWL 83 (92)
Q Consensus 72 ~~~gi~~~~~~l 83 (92)
++.+++.+.+||
T Consensus 26 ~~~nve~A~~~L 37 (37)
T PF00627_consen 26 CNGNVERAVDWL 37 (37)
T ss_dssp TTTSHHHHHHHH
T ss_pred cCCCHHHHHHhC
Confidence 455888888876
No 396
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=33.69 E-value=16 Score=16.32 Aligned_cols=8 Identities=25% Similarity=0.571 Sum_probs=4.3
Q ss_pred CeeCCchh
Q psy2977 1 MVDAADTD 8 (92)
Q Consensus 1 v~D~s~~~ 8 (92)
++|+|||.
T Consensus 25 IvDISnPs 32 (42)
T PF08309_consen 25 IVDISNPS 32 (42)
T ss_pred EEECCCCC
Confidence 35666553
No 397
>cd03363 TOPRIM_TopoIA_TopoI TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=30.49 E-value=76 Score=17.55 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=33.0
Q ss_pred CcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHH
Q psy2977 29 IPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQW 82 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~ 82 (92)
...+++++=.|..+..-...+.+.++. ..+..=+..|+.|..+|.++|..
T Consensus 73 ~~eiiiAtD~drEGe~i~~~i~~~~~~----~~~v~Rl~~sslt~~~I~~A~~n 122 (123)
T cd03363 73 ADEIYLATDPDREGEAIAWHLAEVLKL----KKNVKRVVFNEITKEAIKEALKN 122 (123)
T ss_pred CCEEEEcCCCCcchHHHHHHHHHHcCC----CCCeEEEEEccCCHHHHHHHHhC
Confidence 456888887786544334455555442 23455677899999999988863
No 398
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.26 E-value=1.9e+02 Score=23.04 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=13.8
Q ss_pred CCCcEEEEeeCCCCCC
Q psy2977 27 IGIPILVLGNKRDLPN 42 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~ 42 (92)
...|+.+++||.|+..
T Consensus 255 ~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 255 ARLPVYLVLTKADLLP 270 (1188)
T ss_pred cCCceEEEEecccccc
Confidence 4689999999999864
No 399
>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown. In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.
Probab=30.22 E-value=51 Score=19.04 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=19.7
Q ss_pred EEeeccccCCCHHHHHHHHHHhhhhc
Q psy2977 65 CYSISCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 65 ~~~~SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
=|.+||..|.+....-+.+.+.++..
T Consensus 40 NfRISayk~~~~~ygk~~i~~EL~en 65 (153)
T PF12712_consen 40 NFRISAYKGGSAQYGKECIRQELKEN 65 (153)
T ss_dssp EEEEEEEE--STTHHHHHHHHHHHH-
T ss_pred ceEEEEEecccccchHHHHHHHHHhC
Confidence 57899999999988888888888764
No 400
>PHA03050 glutaredoxin; Provisional
Probab=30.22 E-value=81 Score=17.00 Aligned_cols=7 Identities=29% Similarity=0.942 Sum_probs=3.0
Q ss_pred CcEEEEe
Q psy2977 29 IPILVLG 35 (92)
Q Consensus 29 ~p~ilv~ 35 (92)
+|.+++.
T Consensus 70 VP~IfI~ 76 (108)
T PHA03050 70 VPRIFFG 76 (108)
T ss_pred cCEEEEC
Confidence 4444433
No 401
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=30.20 E-value=62 Score=17.02 Aligned_cols=24 Identities=38% Similarity=0.675 Sum_probs=18.0
Q ss_pred HHHHHHhhcCCCCCCCcEEEEeeC
Q psy2977 14 RNELHALIEKPQLIGIPILVLGNK 37 (92)
Q Consensus 14 ~~~~~~~~~~~~~~~~p~ilv~NK 37 (92)
.+++..+.+++.+-..|+++-.++
T Consensus 77 ~e~~~~l~~~p~LikRPii~~~~~ 100 (105)
T cd02977 77 EEALELMAEHPKLIKRPIVVDGDR 100 (105)
T ss_pred HHHHHHHHhCcCeeeCCEEEECCE
Confidence 356777777887778898887665
No 402
>KOG2792|consensus
Probab=30.18 E-value=1.5e+02 Score=19.17 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHhhcCCCCCCCcEEEEee
Q psy2977 7 TDKLEASRNELHALIEKPQLIGIPILVLGN 36 (92)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~ilv~N 36 (92)
|+.++....|+.++-+.......|+.|-++
T Consensus 156 PdELeKm~~~Vd~i~~~~~~~~~PlFIsvD 185 (280)
T KOG2792|consen 156 PDELEKMSAVVDEIEAKPGLPPVPLFISVD 185 (280)
T ss_pred hHHHHHHHHHHHHHhccCCCCccceEEEeC
Confidence 677887788888887777666678887655
No 403
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.68 E-value=91 Score=18.40 Aligned_cols=15 Identities=7% Similarity=-0.281 Sum_probs=7.0
Q ss_pred ccCCCHHHHHHHHHH
Q psy2977 71 KERDNIDITLQWLIA 85 (92)
Q Consensus 71 ~~~~gi~~~~~~l~~ 85 (92)
-||.|+.+=+-.+.+
T Consensus 141 GTGwGlpde~m~~sD 155 (190)
T COG4752 141 GTGWGLPDELMNTSD 155 (190)
T ss_pred cCCCCCCHHHHHHhh
Confidence 356665544333333
No 404
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=29.09 E-value=1.2e+02 Score=17.40 Aligned_cols=15 Identities=53% Similarity=0.729 Sum_probs=11.7
Q ss_pred CCcEEEEeeCCCCCC
Q psy2977 28 GIPILVLGNKRDLPN 42 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~ 42 (92)
+.|+.+|+||.|...
T Consensus 143 ~~~~~vV~N~~~~~~ 157 (179)
T cd03110 143 GIPVGVVINKYDLND 157 (179)
T ss_pred CCCEEEEEeCCCCCc
Confidence 457889999999753
No 405
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=29.02 E-value=59 Score=21.09 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=17.0
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRM 53 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~ 53 (92)
-++|..+|.||.++-.. ..++..+..
T Consensus 213 f~ip~~iViNr~~~g~s-~ie~~~~e~ 238 (284)
T COG1149 213 FGIPTGIVINRYNLGDS-EIEEYCEEE 238 (284)
T ss_pred hCCceEEEEecCCCCch-HHHHHHHHc
Confidence 47999999999965433 344444443
No 406
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=29.00 E-value=70 Score=14.67 Aligned_cols=11 Identities=9% Similarity=0.374 Sum_probs=6.5
Q ss_pred CCCCcEEEEee
Q psy2977 26 LIGIPILVLGN 36 (92)
Q Consensus 26 ~~~~p~ilv~N 36 (92)
....|.+++.+
T Consensus 47 ~~~~P~v~i~g 57 (60)
T PF00462_consen 47 VRTVPQVFIDG 57 (60)
T ss_dssp SSSSSEEEETT
T ss_pred CCccCEEEECC
Confidence 34577776644
No 407
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=28.90 E-value=1.9e+02 Score=19.63 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCC
Q psy2977 9 KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCA 57 (92)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~ 57 (92)
++..+++.++.+.+- .....+..+++||...+...+.+++.+.+++..
T Consensus 253 slR~ak~lld~l~~~-r~~~~~p~lv~n~~~~~~~~~~~dl~~~~~i~~ 300 (366)
T COG4963 253 SLRNAKELLDELKRL-RPNDPKPILVLNRVGVPKRPEPSDLEEILGIES 300 (366)
T ss_pred HHHHHHHHHHHHHHh-CCCCCCceEEeeecCCCCCCCHHHHHHHhCCch
Confidence 455555655555443 335667789999999876656677777777554
No 408
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=28.82 E-value=36 Score=20.71 Aligned_cols=17 Identities=0% Similarity=0.089 Sum_probs=13.8
Q ss_pred cCCCHHHHHHHHHHhhhh
Q psy2977 72 ERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 72 ~~~gi~~~~~~l~~~i~~ 89 (92)
.|.+ +++|+||++.+.+
T Consensus 103 ~~~~-~~lFd~ia~~i~~ 119 (206)
T PF00349_consen 103 NGSG-EELFDFIADCIAE 119 (206)
T ss_dssp TSBH-HHHHHHHHHHHHH
T ss_pred cCCc-ccHHHHHHHHHHH
Confidence 5666 9999999998864
No 409
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=28.81 E-value=2.2e+02 Score=20.28 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=34.7
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
-++|+++.+||---........+.+.+.. ..-.+..-+.=|+-|+|-.++-+.+.+.+.+
T Consensus 368 fgvp~VVAIN~F~tDt~~Ei~~i~~~~~~---~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 368 FGVPVVVAINKFPTDTEAEIAAIEKLCEE---HGVEVALSEVWAKGGEGGIELAKKVVEAIEQ 427 (554)
T ss_pred cCCCeEEEeccCCCCCHHHHHHHHHHHHH---cCCceeehhhhhccCccHHHHHHHHHHHHhC
Confidence 47999999999552211122223333221 1122333344467889999888888877764
No 410
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=28.73 E-value=1.2e+02 Score=17.17 Aligned_cols=35 Identities=11% Similarity=-0.048 Sum_probs=23.0
Q ss_pred CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHH
Q psy2977 44 LDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWL 83 (92)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l 83 (92)
.+.+++.+... ..+..++.+|+..+.....+.+++
T Consensus 41 vp~e~i~~~a~-----~~~~d~V~lS~~~~~~~~~~~~~~ 75 (137)
T PRK02261 41 TSQEEFIDAAI-----ETDADAILVSSLYGHGEIDCRGLR 75 (137)
T ss_pred CCHHHHHHHHH-----HcCCCEEEEcCccccCHHHHHHHH
Confidence 45566655432 234668999999888877665555
No 411
>PLN02759 Formate--tetrahydrofolate ligase
Probab=28.65 E-value=2.2e+02 Score=20.89 Aligned_cols=57 Identities=5% Similarity=-0.097 Sum_probs=33.3
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCc-eEEEeec--cccCCCHHHHHHHHHHhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDRE-ICCYSIS--CKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S--A~~~~gi~~~~~~l~~~i~ 88 (92)
-++|++|++|+-.-......+.+.+... ..+ ..+..+. ++-|+|-.++-+.+.+.+.
T Consensus 449 fg~pvVVaiN~F~~Dt~~Ei~~v~~~~~-----~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 508 (637)
T PLN02759 449 YGVNVVVAINMFATDTEAELEAVRQAAL-----AAGAFDAVLCTHHAHGGKGAVDLGEAVQKACE 508 (637)
T ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHH-----HcCCCcEEEechhhcccHHHHHHHHHHHHHHh
Confidence 4799999999865322112223333321 222 2333333 4668898888888887765
No 412
>PHA02096 hypothetical protein
Probab=28.59 E-value=96 Score=16.13 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhcCC-----CCCCCcEEEEeeC
Q psy2977 10 LEASRNELHALIEKP-----QLIGIPILVLGNK 37 (92)
Q Consensus 10 ~~~~~~~~~~~~~~~-----~~~~~p~ilv~NK 37 (92)
+..+++.+.+.+... .+-+.|-|+..||
T Consensus 42 ~~~ak~~i~eylkgt~vikkrlfg~ptiv~ink 74 (103)
T PHA02096 42 LKNAKKSIEEYLKGTTVIKKRLFGPPTIVSVNK 74 (103)
T ss_pred HHHHHHHHHHHhcccchhhhhhcCCCeEEEecC
Confidence 444555566665431 2346899999998
No 413
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=28.50 E-value=1.1e+02 Score=19.41 Aligned_cols=42 Identities=12% Similarity=-0.069 Sum_probs=23.0
Q ss_pred cEEEEeeCCCCCCCCC-HHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHH
Q psy2977 30 PILVLGNKRDLPNALD-EKELIDRMNLCAIQDREICCYSISCKERDNIDITLQ 81 (92)
Q Consensus 30 p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~ 81 (92)
+--+++||.|...... .-.+.... +.++..++ +|++++++-.
T Consensus 219 ~~g~IlTKlDe~~~~G~~l~~~~~~--------~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 219 LTGIILTKLDGTAKGGIILSIAYEL--------KLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred CCEEEEEccCCCCCccHHHHHHHHH--------CcCEEEEe--CCCChHhCcc
Confidence 3467889999753222 11222221 23455554 8999877643
No 414
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=28.14 E-value=1.4e+02 Score=22.11 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=29.9
Q ss_pred CHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 45 DEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
+.+++...+...-+.....+.+.-||.++.|++.+++.+.+.+-
T Consensus 235 ~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lP 278 (697)
T COG0480 235 TEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLP 278 (697)
T ss_pred cHHHHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCC
Confidence 33444444432222233467888899999999999999998874
No 415
>COG3596 Predicted GTPase [General function prediction only]
Probab=27.98 E-value=86 Score=20.48 Aligned_cols=63 Identities=8% Similarity=-0.018 Sum_probs=38.6
Q ss_pred CCcEEEEeeCCCCCCCC---------CHHHHHHhhc----c-CCcCCCceEEEeeccccCCCHHHHHHHHHHhhhhc
Q psy2977 28 GIPILVLGNKRDLPNAL---------DEKELIDRMN----L-CAIQDREICCYSISCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~---------~~~~~~~~~~----~-~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
+.|++++.|-.|..... +...+++.+. . ...-..-.+++..|+..+.|++.+...+.+.+...
T Consensus 148 ~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 148 DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 48999999999974321 1111111111 0 00001123577888899999999999999887643
No 416
>KOG1954|consensus
Probab=27.86 E-value=1.3e+02 Score=20.92 Aligned_cols=15 Identities=33% Similarity=0.164 Sum_probs=11.6
Q ss_pred CCcEEEEeeCCCCCC
Q psy2977 28 GIPILVLGNKRDLPN 42 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~ 42 (92)
+-.+=||+||.|..+
T Consensus 211 EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 211 EDKIRVVLNKADQVD 225 (532)
T ss_pred cceeEEEeccccccC
Confidence 446788899999763
No 417
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=27.77 E-value=59 Score=18.14 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=22.7
Q ss_pred EEEeeccccCCCHHHHHHHHHHhhhhc
Q psy2977 64 CCYSISCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 64 ~~~~~SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
-++.+||......-++.+++.+.++..
T Consensus 82 v~i~v~a~hR~~af~A~~~~id~lK~~ 108 (124)
T cd00756 82 VLVAVSSPHRKEAFEACEFLIDRLKHR 108 (124)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 467899999988889999999998763
No 418
>PF02391 MoaE: MoaE protein; InterPro: IPR003448 This family contains the MoaE protein that is involved in biosynthesis of molybdopterin []. Molybdopterin, the universal component of the pterin molybdenum cofactors, contains a dithiolene group serving to bind Mo. Addition of the dithiolene sulphurs to a molybdopterin precursor requires the activity of the converting factor. Converting factor contains the MoaE and MoaD proteins.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 2WP4_B 2OMD_B 1NVJ_E 1FM0_E 3BII_E 1NVI_E 1FMA_E 2QIE_K 2Q5W_E 3RPF_A ....
Probab=27.54 E-value=41 Score=18.46 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=22.5
Q ss_pred EEEeeccccCCCHHHHHHHHHHhhhhc
Q psy2977 64 CCYSISCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 64 ~~~~~SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
-++.+||......-++++++.+.+++.
T Consensus 90 v~V~vsa~hR~eaf~A~~~~id~iK~~ 116 (117)
T PF02391_consen 90 VLVAVSAPHRKEAFEACEYIIDRIKKE 116 (117)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHhhc
Confidence 467789999888889999999988763
No 419
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=26.49 E-value=30 Score=19.75 Aligned_cols=17 Identities=18% Similarity=0.071 Sum_probs=12.7
Q ss_pred EEeeccccCCCHHHHHH
Q psy2977 65 CYSISCKERDNIDITLQ 81 (92)
Q Consensus 65 ~~~~SA~~~~gi~~~~~ 81 (92)
+-.-|++.|.||+++++
T Consensus 9 w~vSS~k~g~gv~~L~D 25 (139)
T cd08366 9 WSLSSAKPGNGVDQLRD 25 (139)
T ss_pred EEEEeCCCCCCHHHhcC
Confidence 34457788999998864
No 420
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=26.41 E-value=1.3e+02 Score=17.06 Aligned_cols=45 Identities=11% Similarity=-0.045 Sum_probs=26.5
Q ss_pred CCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 39 DLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 39 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
|+-...+.+++.+... ..+..++.+|++.+..... +..+.+.+++
T Consensus 34 ~LG~~v~~e~~v~aa~-----~~~adiVglS~l~~~~~~~-~~~~~~~l~~ 78 (134)
T TIGR01501 34 NLGVLSPQEEFIKAAI-----ETKADAILVSSLYGHGEID-CKGLRQKCDE 78 (134)
T ss_pred ECCCCCCHHHHHHHHH-----HcCCCEEEEecccccCHHH-HHHHHHHHHH
Confidence 3433445666655432 2346689999998877653 4445555543
No 421
>KOG3929|consensus
Probab=25.45 E-value=42 Score=21.84 Aligned_cols=15 Identities=27% Similarity=0.693 Sum_probs=12.8
Q ss_pred CCcEEEEeeCCCCCC
Q psy2977 28 GIPILVLGNKRDLPN 42 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~ 42 (92)
.+|++||+.|.|.-.
T Consensus 190 P~PV~IVgsKYDvFq 204 (363)
T KOG3929|consen 190 PVPVVIVGSKYDVFQ 204 (363)
T ss_pred CCceEEeccchhhhc
Confidence 489999999999753
No 422
>KOG0467|consensus
Probab=24.85 E-value=43 Score=25.02 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=10.1
Q ss_pred CCcEEEEeeCCC
Q psy2977 28 GIPILVLGNKRD 39 (92)
Q Consensus 28 ~~p~ilv~NK~D 39 (92)
+...++|+||+|
T Consensus 124 ~~~~~lvinkid 135 (887)
T KOG0467|consen 124 GLKPILVINKID 135 (887)
T ss_pred cCceEEEEehhh
Confidence 456799999999
No 423
>PF11758 Bacteriocin_IIi: Aureocin-like type II bacteriocin; InterPro: IPR020968 This is a small family of type II bacteriocins usually encoded on a plasmid. Characteristically the members are small, cationic, rich in Lys and Try, and bring about a generalised membrane permeabilisation leading to leakage of ions. The family includes aureocin A, lacticins Q and Z, and BhtB [, ].
Probab=24.21 E-value=44 Score=15.66 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=13.0
Q ss_pred cCCCHHHHHHHHHHhhhh
Q psy2977 72 ERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 72 ~~~gi~~~~~~l~~~i~~ 89 (92)
..-|.-..++|+.+.+++
T Consensus 30 ~win~G~a~dWI~~kI~~ 47 (51)
T PF11758_consen 30 KWINAGMAIDWIVQKIKK 47 (51)
T ss_pred HHHhccchHHHHHHHHHH
Confidence 344566788899888865
No 424
>KOG1610|consensus
Probab=23.54 E-value=1.6e+02 Score=19.55 Aligned_cols=33 Identities=9% Similarity=0.161 Sum_probs=25.2
Q ss_pred eeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCC
Q psy2977 2 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 39 (92)
Q Consensus 2 ~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 39 (92)
.|+|+++++.++.+|+.+.+.+.+ +.=+.|-.-
T Consensus 83 LDVT~~esi~~a~~~V~~~l~~~g-----LwglVNNAG 115 (322)
T KOG1610|consen 83 LDVTKPESVKEAAQWVKKHLGEDG-----LWGLVNNAG 115 (322)
T ss_pred eccCCHHHHHHHHHHHHHhccccc-----ceeEEeccc
Confidence 589999999999999998876533 555566554
No 425
>PF06260 DUF1024: Protein of unknown function (DUF1024); InterPro: IPR009368 This entry is represented by Bacteriophage 92, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins from Staphylococcus aureus, which are related to Orf64 from Staphylococcus phage 92 (Bacteriophage 92). The function of this family is unknown.
Probab=22.24 E-value=52 Score=17.04 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=17.3
Q ss_pred EEeeccccCCCHHHHHHHHHHhhh
Q psy2977 65 CYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 65 ~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
++..||.+|..-+.++..|-+.-+
T Consensus 11 visasay~g~dte~llkEiedVYK 34 (82)
T PF06260_consen 11 VISASAYNGNDTEGLLKEIEDVYK 34 (82)
T ss_pred HHhhhhccCCchHHHHHHHHHHHH
Confidence 567789999887777776655444
No 426
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=21.90 E-value=1.1e+02 Score=16.49 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=18.3
Q ss_pred HHHHHhhcCCCCCCCcEEEEeeCC
Q psy2977 15 NELHALIEKPQLIGIPILVLGNKR 38 (92)
Q Consensus 15 ~~~~~~~~~~~~~~~p~ilv~NK~ 38 (92)
+++..+.+++.+-..|+++-.++.
T Consensus 77 e~i~ll~~~P~LikRPIi~~~~~~ 100 (112)
T cd03034 77 ELIDAMAAHPILIERPIVVTGDGA 100 (112)
T ss_pred HHHHHHHhCcCcccCCEEEECCEE
Confidence 567777778888889988877764
No 427
>PF10683 DBD_Tnp_Hermes: Hermes transposase DNA-binding domain ; InterPro: IPR018473 This domain confers specific DNA-binding on Hermes transposase [].; PDB: 2BW3_B.
Probab=21.58 E-value=57 Score=16.32 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=13.8
Q ss_pred EeeccccCCCHHHHHHHHHH
Q psy2977 66 YSISCKERDNIDITLQWLIA 85 (92)
Q Consensus 66 ~~~SA~~~~gi~~~~~~l~~ 85 (92)
-+.|+.+|.|..++.+.+.+
T Consensus 29 Rpfsiv~gsGfk~la~~li~ 48 (68)
T PF10683_consen 29 RPFSIVSGSGFKKLAQFLIN 48 (68)
T ss_dssp --GGGGG-HHHHHHHHHHHH
T ss_pred CcceeeccccHHHHHHHHHH
Confidence 46688999999888877765
No 428
>KOG2743|consensus
Probab=21.40 E-value=63 Score=21.54 Aligned_cols=12 Identities=33% Similarity=0.412 Sum_probs=9.1
Q ss_pred EEEeeCCCCCCC
Q psy2977 32 LVLGNKRDLPNA 43 (92)
Q Consensus 32 ilv~NK~Dl~~~ 43 (92)
-++.||.||...
T Consensus 215 ~II~NKtDli~~ 226 (391)
T KOG2743|consen 215 RIIMNKTDLVSE 226 (391)
T ss_pred eeeeccccccCH
Confidence 366899999754
No 429
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=21.24 E-value=1.7e+02 Score=16.52 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=12.8
Q ss_pred HHHHHHhhc-CCCCCCCcEEEE
Q psy2977 14 RNELHALIE-KPQLIGIPILVL 34 (92)
Q Consensus 14 ~~~~~~~~~-~~~~~~~p~ilv 34 (92)
..|+.-+.+ ++.+..+|+++=
T Consensus 103 ~~WI~~Lq~~NP~L~~ipV~Fr 124 (126)
T PF14784_consen 103 LSWIRGLQETNPNLAQIPVLFR 124 (126)
T ss_pred HHHHHHHHhhCCchhcceEEEE
Confidence 456555443 556678887763
No 430
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.67 E-value=1.8e+02 Score=16.44 Aligned_cols=45 Identities=13% Similarity=-0.001 Sum_probs=25.8
Q ss_pred CCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 39 DLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 39 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
|+--..+.+++.+... ..+..++.+|++.+..... +..+.+.+++
T Consensus 32 dLG~~v~~e~~v~aa~-----~~~adiVglS~L~t~~~~~-~~~~~~~l~~ 76 (128)
T cd02072 32 NLGVLSPQEEFIDAAI-----ETDADAILVSSLYGHGEID-CKGLREKCDE 76 (128)
T ss_pred ECCCCCCHHHHHHHHH-----HcCCCEEEEeccccCCHHH-HHHHHHHHHH
Confidence 4433445666655432 2356689999998887653 3344444443
No 431
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=20.39 E-value=1.1e+02 Score=20.06 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=35.2
Q ss_pred CCcEEEEeeCCCCCCC-CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 28 GIPILVLGNKRDLPNA-LDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
.+|..++..=...++. ...+.+.+.+. ......++..++++..++..++..+...+..
T Consensus 87 ~IPtA~lltGvN~~dh~~~F~~L~~~L~----~~~~~~vv~L~S~dc~~lk~~lk~iv~ql~~ 145 (330)
T PF07034_consen 87 EIPTALLLTGVNIPDHDLLFEQLSERLQ----SSVGPYVVRLNSKDCSNLKSALKSIVRQLMS 145 (330)
T ss_pred ccchHHHHhCCCCccHHHHHHHHHHHHH----hCCCcEEEEEecccchHHHHHHHHHHHHHHh
Confidence 4665555443333321 12234444443 1224567888999999999999999988754
Done!