Query psy2977
Match_columns 92
No_of_seqs 229 out of 1243
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 22:23:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fzq_A ADP-ribosylation factor 99.8 1.4E-20 4.8E-25 109.0 9.9 91 1-91 90-180 (181)
2 1r8s_A ADP-ribosylation factor 99.8 4.1E-20 1.4E-24 104.8 10.1 90 1-90 74-163 (164)
3 1moz_A ARL1, ADP-ribosylation 99.8 1.4E-19 4.7E-24 104.3 10.8 90 1-90 92-181 (183)
4 3l82_B F-box only protein 4; T 99.8 2.1E-20 7.3E-25 110.7 7.1 89 1-91 132-225 (227)
5 2b6h_A ADP-ribosylation factor 99.8 1.3E-19 4.4E-24 105.8 10.3 89 1-89 103-191 (192)
6 2x77_A ADP-ribosylation factor 99.8 2.5E-19 8.5E-24 103.9 11.0 91 1-91 96-186 (189)
7 1upt_A ARL1, ADP-ribosylation 99.8 2.1E-19 7.1E-24 102.4 9.9 90 1-90 81-170 (171)
8 1ksh_A ARF-like protein 2; sma 99.8 2.6E-19 8.9E-24 103.5 10.4 90 1-90 92-181 (186)
9 1zd9_A ADP-ribosylation factor 99.8 3.2E-19 1.1E-23 103.6 10.0 91 1-91 97-187 (188)
10 1zj6_A ADP-ribosylation factor 99.8 3.4E-19 1.2E-23 103.3 9.7 89 1-89 90-178 (187)
11 1m2o_B GTP-binding protein SAR 99.8 4.6E-19 1.6E-23 103.3 10.2 87 1-87 97-190 (190)
12 2h57_A ADP-ribosylation factor 99.8 6.2E-19 2.1E-23 102.4 10.6 90 1-90 97-188 (190)
13 1f6b_A SAR1; gtpases, N-termin 99.8 4.7E-19 1.6E-23 103.9 10.0 87 1-87 99-197 (198)
14 2h17_A ADP-ribosylation factor 99.8 4E-19 1.4E-23 102.6 9.3 87 1-87 95-181 (181)
15 4bas_A ADP-ribosylation factor 99.8 1.5E-19 5.2E-24 105.3 6.8 90 1-90 93-190 (199)
16 3o47_A ADP-ribosylation factor 99.8 1.9E-18 6.3E-23 108.5 10.1 90 1-90 239-328 (329)
17 3l2o_B F-box only protein 4; s 99.8 3.3E-19 1.1E-23 109.9 6.1 89 1-91 217-310 (312)
18 3lvq_E ARF-GAP with SH3 domain 99.8 2.6E-18 8.8E-23 112.4 10.4 90 1-90 396-485 (497)
19 4dkx_A RAS-related protein RAB 99.8 6.9E-19 2.4E-23 104.9 6.2 83 1-89 92-176 (216)
20 3q72_A GTP-binding protein RAD 99.8 7.8E-18 2.7E-22 95.5 9.3 85 1-90 79-165 (166)
21 3q85_A GTP-binding protein REM 99.8 6.1E-18 2.1E-22 96.2 8.2 85 1-90 82-168 (169)
22 3ihw_A Centg3; RAS, centaurin, 99.7 1.4E-17 4.8E-22 96.7 9.3 87 1-91 92-182 (184)
23 2g3y_A GTP-binding protein GEM 99.7 8.9E-18 3.1E-22 99.8 8.0 85 1-90 118-204 (211)
24 2nzj_A GTP-binding protein REM 99.7 1.1E-17 3.8E-22 95.5 8.1 85 1-90 84-170 (175)
25 3t1o_A Gliding protein MGLA; G 99.7 4.4E-17 1.5E-21 94.5 9.6 83 1-90 104-193 (198)
26 3cbq_A GTP-binding protein REM 99.7 3.5E-17 1.2E-21 95.8 8.5 85 1-90 103-189 (195)
27 1u8z_A RAS-related protein RAL 99.7 2.9E-17 9.8E-22 93.0 6.3 84 1-89 82-167 (168)
28 3kkq_A RAS-related protein M-R 99.7 4.2E-17 1.4E-21 93.9 6.9 84 1-89 96-182 (183)
29 4dsu_A GTPase KRAS, isoform 2B 99.7 5.4E-17 1.8E-21 93.6 6.9 84 1-89 82-166 (189)
30 2hup_A RAS-related protein RAB 99.7 8.7E-17 3E-21 94.4 7.7 84 1-90 108-194 (201)
31 1c1y_A RAS-related protein RAP 99.7 8.6E-17 2.9E-21 91.1 7.0 84 1-88 81-166 (167)
32 2cjw_A GTP-binding protein GEM 99.7 1.8E-16 6E-21 92.6 8.4 84 1-89 87-172 (192)
33 2iwr_A Centaurin gamma 1; ANK 99.7 3.8E-16 1.3E-20 89.5 9.5 84 1-89 79-169 (178)
34 2a9k_A RAS-related protein RAL 99.7 5.8E-17 2E-21 93.3 6.1 85 1-90 96-182 (187)
35 2bov_A RAla, RAS-related prote 99.7 1.4E-16 4.9E-21 93.1 7.8 84 1-89 92-177 (206)
36 3t5g_A GTP-binding protein RHE 99.7 7.7E-17 2.6E-21 92.7 6.5 85 1-90 84-170 (181)
37 2fu5_C RAS-related protein RAB 99.7 1.5E-16 5.1E-21 91.6 7.7 83 1-89 87-171 (183)
38 2fn4_A P23, RAS-related protei 99.7 1E-16 3.5E-21 91.8 6.7 85 1-90 87-173 (181)
39 1x3s_A RAS-related protein RAB 99.7 3.1E-16 1.1E-20 90.9 8.0 85 1-90 94-179 (195)
40 2f7s_A C25KG, RAS-related prot 99.7 2.9E-16 9.8E-21 92.7 7.5 84 1-89 114-199 (217)
41 2atv_A RERG, RAS-like estrogen 99.7 1.1E-16 3.7E-21 93.3 5.5 85 1-90 105-192 (196)
42 3bc1_A RAS-related protein RAB 99.7 2.3E-16 7.7E-21 91.2 6.6 84 1-89 100-185 (195)
43 3oes_A GTPase rhebl1; small GT 99.7 2E-16 6.9E-21 92.6 6.5 85 1-90 102-188 (201)
44 2efe_B Small GTP-binding prote 99.7 6.6E-16 2.3E-20 88.6 8.4 84 1-90 91-176 (181)
45 2ce2_X GTPase HRAS; signaling 99.7 2.6E-16 8.7E-21 88.8 6.5 84 1-89 81-165 (166)
46 1ek0_A Protein (GTP-binding pr 99.7 1.3E-17 4.4E-22 94.7 1.1 83 1-89 82-169 (170)
47 2a5j_A RAS-related protein RAB 99.7 3.5E-16 1.2E-20 90.9 7.2 83 1-89 100-184 (191)
48 1r2q_A RAS-related protein RAB 99.7 4.5E-16 1.5E-20 88.2 7.1 83 1-89 85-169 (170)
49 2fg5_A RAB-22B, RAS-related pr 99.7 5.9E-16 2E-20 90.1 7.7 84 1-90 102-187 (192)
50 1g16_A RAS-related protein SEC 99.6 3.2E-16 1.1E-20 89.0 6.4 84 1-90 82-166 (170)
51 1z0f_A RAB14, member RAS oncog 99.6 7.2E-16 2.5E-20 88.1 7.8 83 1-89 94-178 (179)
52 3dz8_A RAS-related protein RAB 99.6 5.5E-16 1.9E-20 90.1 7.1 84 1-90 102-187 (191)
53 2g6b_A RAS-related protein RAB 99.6 6.9E-16 2.4E-20 88.4 7.3 84 1-90 90-175 (180)
54 1ky3_A GTP-binding protein YPT 99.6 4.9E-16 1.7E-20 89.0 6.6 86 1-90 88-179 (182)
55 3tkl_A RAS-related protein RAB 99.6 9.7E-16 3.3E-20 88.9 7.9 84 1-90 95-180 (196)
56 2bcg_Y Protein YP2, GTP-bindin 99.6 1.3E-15 4.6E-20 89.2 8.5 84 1-90 87-172 (206)
57 2yc2_C IFT27, small RAB-relate 99.6 5.8E-16 2E-20 90.5 6.8 84 1-89 103-192 (208)
58 1kao_A RAP2A; GTP-binding prot 99.6 2.3E-16 7.9E-21 89.1 4.8 84 1-89 81-166 (167)
59 1z08_A RAS-related protein RAB 99.6 3.5E-16 1.2E-20 88.8 5.6 83 1-89 85-169 (170)
60 3c5h_A Glucocorticoid receptor 99.6 9.8E-17 3.4E-21 97.5 3.4 84 1-88 169-254 (255)
61 3con_A GTPase NRAS; structural 99.6 9E-16 3.1E-20 88.8 7.3 85 1-90 99-184 (190)
62 3tw8_B RAS-related protein RAB 99.6 8.9E-16 3.1E-20 87.9 7.0 83 1-90 88-172 (181)
63 1wms_A RAB-9, RAB9, RAS-relate 99.6 1.3E-15 4.5E-20 87.1 7.7 86 1-90 86-175 (177)
64 2il1_A RAB12; G-protein, GDP, 99.6 1.3E-15 4.5E-20 88.6 7.7 85 1-90 105-191 (192)
65 4djt_A GTP-binding nuclear pro 99.6 1.3E-15 4.5E-20 89.9 7.9 84 1-90 91-176 (218)
66 2oil_A CATX-8, RAS-related pro 99.6 1.2E-15 4.2E-20 88.6 7.5 84 1-90 104-189 (193)
67 1zbd_A Rabphilin-3A; G protein 99.6 1.3E-15 4.5E-20 89.0 7.6 83 1-89 87-171 (203)
68 2gf9_A RAS-related protein RAB 99.6 1E-15 3.5E-20 88.7 7.0 84 1-90 101-186 (189)
69 2bme_A RAB4A, RAS-related prot 99.6 1E-15 3.6E-20 88.1 6.9 83 1-89 89-173 (186)
70 2o52_A RAS-related protein RAB 99.6 1.1E-15 3.8E-20 89.5 7.0 83 1-89 104-188 (200)
71 1z0j_A RAB-22, RAS-related pro 99.6 1.9E-15 6.4E-20 85.8 7.7 83 1-89 85-169 (170)
72 2ew1_A RAS-related protein RAB 99.6 6.7E-16 2.3E-20 90.8 5.9 83 1-89 105-189 (201)
73 1z2a_A RAS-related protein RAB 99.6 4.1E-16 1.4E-20 88.3 4.7 82 1-89 84-167 (168)
74 1z06_A RAS-related protein RAB 99.6 7.9E-16 2.7E-20 89.2 6.0 84 1-89 100-188 (189)
75 3reg_A RHO-like small GTPase; 99.6 9.3E-16 3.2E-20 89.2 6.2 84 1-91 101-190 (194)
76 2p5s_A RAS and EF-hand domain 99.6 7E-16 2.4E-20 90.2 5.7 84 1-90 107-198 (199)
77 3gj0_A GTP-binding nuclear pro 99.6 3.4E-16 1.2E-20 92.8 4.4 83 1-90 94-176 (221)
78 3clv_A RAB5 protein, putative; 99.6 3.4E-15 1.2E-19 86.7 8.5 82 1-90 123-205 (208)
79 2atx_A Small GTP binding prote 99.6 1.7E-15 5.7E-20 88.0 7.1 81 1-88 96-192 (194)
80 3cpj_B GTP-binding protein YPT 99.6 1.3E-15 4.6E-20 90.4 6.7 84 1-90 92-177 (223)
81 3c5c_A RAS-like protein 12; GD 99.6 3.7E-16 1.3E-20 90.7 3.7 84 1-89 98-186 (187)
82 3q3j_B RHO-related GTP-binding 99.6 7.2E-16 2.5E-20 91.3 4.7 83 1-90 105-204 (214)
83 2y8e_A RAB-protein 6, GH09086P 99.6 1.2E-15 4.2E-20 87.1 5.5 84 1-90 93-178 (179)
84 1vg8_A RAS-related protein RAB 99.6 1.9E-15 6.6E-20 88.4 6.2 85 1-89 87-175 (207)
85 2hxs_A RAB-26, RAS-related pro 99.6 1.5E-15 5E-20 86.9 5.3 86 1-91 86-175 (178)
86 3l0i_B RAS-related protein RAB 99.6 8.6E-17 2.9E-21 94.1 -0.0 85 1-91 112-198 (199)
87 3cph_A RAS-related protein SEC 99.6 2E-15 6.7E-20 88.7 5.8 83 1-89 99-182 (213)
88 2j1l_A RHO-related GTP-binding 99.6 3.5E-15 1.2E-19 88.2 6.8 84 1-91 112-211 (214)
89 2gf0_A GTP-binding protein DI- 99.6 1.5E-15 5.3E-20 88.2 4.9 85 1-90 86-172 (199)
90 2erx_A GTP-binding protein DI- 99.6 2.6E-15 8.9E-20 85.2 5.5 85 1-90 81-168 (172)
91 2q3h_A RAS homolog gene family 99.6 2.8E-15 9.7E-20 87.5 5.6 83 1-90 98-196 (201)
92 4gzl_A RAS-related C3 botulinu 99.6 2.9E-15 9.8E-20 88.0 5.3 81 1-87 108-203 (204)
93 1mh1_A RAC1; GTP-binding, GTPa 99.6 4.8E-15 1.6E-19 85.2 5.4 83 1-90 83-181 (186)
94 2gco_A H9, RHO-related GTP-bin 99.6 1.4E-14 4.9E-19 84.7 7.3 82 1-89 103-200 (201)
95 2j0v_A RAC-like GTP-binding pr 99.6 2.7E-15 9.3E-20 88.3 4.2 82 1-89 87-180 (212)
96 2fv8_A H6, RHO-related GTP-bin 99.6 1.4E-14 4.8E-19 85.1 6.9 88 1-90 103-201 (207)
97 2fh5_B SR-beta, signal recogni 99.5 5E-14 1.7E-18 82.9 9.2 87 1-87 85-214 (214)
98 1m7b_A RND3/RHOE small GTP-bin 99.5 4.4E-15 1.5E-19 85.8 4.6 83 1-89 85-183 (184)
99 3bwd_D RAC-like GTP-binding pr 99.5 4.1E-15 1.4E-19 85.3 4.1 81 1-88 86-180 (182)
100 1gwn_A RHO-related GTP-binding 99.5 1E-14 3.6E-19 85.9 4.5 83 1-89 106-204 (205)
101 2qu8_A Putative nucleolar GTP- 99.5 1.3E-14 4.3E-19 86.5 4.6 84 1-89 115-205 (228)
102 3pqc_A Probable GTP-binding pr 99.5 2.2E-14 7.4E-19 83.0 5.5 62 28-89 133-194 (195)
103 3llu_A RAS-related GTP-binding 99.5 9.5E-15 3.2E-19 85.2 3.8 84 1-87 102-195 (196)
104 1cip_A Protein (guanine nucleo 99.5 1.4E-14 4.9E-19 91.7 4.8 90 1-90 223-345 (353)
105 1zcb_A G alpha I/13; GTP-bindi 99.5 1.7E-14 5.7E-19 91.7 4.9 89 1-89 231-353 (362)
106 2zej_A Dardarin, leucine-rich 99.5 1.6E-14 5.5E-19 83.5 3.6 84 1-90 86-179 (184)
107 1svi_A GTP-binding protein YSX 99.5 6.9E-14 2.4E-18 81.1 6.2 79 1-88 112-194 (195)
108 2cxx_A Probable GTP-binding pr 99.5 1.1E-14 3.6E-19 84.1 2.4 90 1-91 86-186 (190)
109 3th5_A RAS-related C3 botulinu 99.2 4.1E-15 1.4E-19 87.1 0.0 85 1-87 108-203 (204)
110 2wkq_A NPH1-1, RAS-related C3 99.5 6.5E-14 2.2E-18 86.9 5.3 82 1-89 233-330 (332)
111 1u0l_A Probable GTPase ENGC; p 99.5 5E-14 1.7E-18 87.5 4.3 79 1-86 91-170 (301)
112 2gj8_A MNME, tRNA modification 99.5 1.5E-14 5E-19 83.1 1.5 77 1-89 90-166 (172)
113 1lnz_A SPO0B-associated GTP-bi 99.4 1.2E-13 4.2E-18 87.1 5.0 84 1-90 243-331 (342)
114 2lkc_A Translation initiation 99.4 7.5E-13 2.6E-17 75.5 7.6 85 1-91 85-173 (178)
115 2e87_A Hypothetical protein PH 99.4 2.4E-13 8.3E-18 86.0 5.1 82 1-89 253-336 (357)
116 2wji_A Ferrous iron transport 99.4 4.3E-14 1.5E-18 80.4 0.8 73 1-88 88-164 (165)
117 2xtz_A Guanine nucleotide-bind 99.4 1.1E-13 3.7E-18 87.7 2.3 84 6-89 228-345 (354)
118 3ohm_A Guanine nucleotide-bind 99.4 6.7E-13 2.3E-17 83.3 5.1 88 3-90 209-319 (327)
119 4dhe_A Probable GTP-binding pr 99.3 8.3E-13 2.8E-17 78.0 4.4 84 1-89 122-211 (223)
120 3r7w_B Gtpase2, GTP-binding pr 99.3 1.6E-12 5.6E-17 81.6 5.9 86 1-89 79-174 (331)
121 2dyk_A GTP-binding protein; GT 99.3 4.2E-13 1.4E-17 75.4 2.9 74 1-87 86-160 (161)
122 2yv5_A YJEQ protein; hydrolase 99.3 1E-12 3.5E-17 81.7 3.7 77 1-86 86-166 (302)
123 1azs_C GS-alpha; complex (lyas 99.3 1.9E-13 6.3E-18 87.9 0.2 89 1-89 247-385 (402)
124 3iev_A GTP-binding protein ERA 99.3 2.6E-12 9E-17 79.9 5.3 83 1-89 99-182 (308)
125 2wjg_A FEOB, ferrous iron tran 99.3 4.3E-13 1.5E-17 77.3 0.6 74 2-90 93-170 (188)
126 1xzp_A Probable tRNA modificat 99.3 2E-11 6.9E-16 80.0 7.9 75 1-88 330-404 (482)
127 2hjg_A GTP-binding protein ENG 99.3 7.6E-12 2.6E-16 81.0 5.8 84 1-89 264-349 (436)
128 2f9l_A RAB11B, member RAS onco 99.3 3.1E-11 1.1E-15 70.4 7.8 83 1-89 84-168 (199)
129 3b1v_A Ferrous iron uptake tra 99.2 9.8E-13 3.4E-17 80.7 0.5 73 1-88 87-163 (272)
130 3dpu_A RAB family protein; roc 99.2 2.2E-11 7.6E-16 80.5 6.7 80 1-90 128-209 (535)
131 4dcu_A GTP-binding protein ENG 99.2 1.1E-11 3.6E-16 80.7 5.0 85 1-90 284-370 (456)
132 3i8s_A Ferrous iron transport 99.2 3.5E-13 1.2E-17 82.7 -2.1 74 1-89 92-169 (274)
133 3gee_A MNME, tRNA modification 99.2 2E-11 6.9E-16 79.9 5.8 74 1-88 319-397 (476)
134 3iby_A Ferrous iron transport 99.2 5.9E-13 2E-17 81.0 -1.4 71 1-86 90-164 (256)
135 3a1s_A Iron(II) transport prot 99.2 2.1E-11 7.1E-16 74.3 5.0 73 1-88 90-166 (258)
136 3qq5_A Small GTP-binding prote 99.2 2E-11 6.7E-16 79.0 4.8 66 14-88 130-195 (423)
137 1oix_A RAS-related protein RAB 99.2 9.2E-11 3.2E-15 68.1 6.9 81 1-87 108-190 (191)
138 3sjy_A Translation initiation 99.2 2.8E-11 9.5E-16 77.7 4.6 84 1-89 105-192 (403)
139 4fid_A G protein alpha subunit 99.2 2.2E-11 7.6E-16 76.8 4.0 84 6-89 206-328 (340)
140 3r7w_A Gtpase1, GTP-binding pr 99.1 1.5E-11 5.2E-16 76.4 2.6 80 1-88 87-180 (307)
141 1wf3_A GTP-binding protein; GT 99.1 2.4E-11 8.2E-16 75.5 3.3 80 1-89 93-173 (301)
142 3geh_A MNME, tRNA modification 99.1 3.2E-10 1.1E-14 74.1 7.0 75 1-89 310-384 (462)
143 1s0u_A EIF-2-gamma, translatio 99.1 7E-10 2.4E-14 71.3 8.3 58 29-88 136-197 (408)
144 1mky_A Probable GTP-binding pr 99.1 1.7E-10 5.9E-15 74.7 5.4 83 2-89 271-355 (439)
145 3h2y_A GTPase family protein; 99.1 5.1E-11 1.7E-15 75.8 2.8 79 1-87 76-158 (368)
146 2qtf_A Protein HFLX, GTP-bindi 99.1 2.1E-10 7.2E-15 73.0 5.3 87 1-89 264-354 (364)
147 2ywe_A GTP-binding protein LEP 99.1 5.6E-10 1.9E-14 74.9 7.2 82 1-89 103-184 (600)
148 3k53_A Ferrous iron transport 99.0 4.9E-10 1.7E-14 68.4 5.6 76 1-90 88-167 (271)
149 1udx_A The GTP-binding protein 99.0 2.2E-10 7.4E-15 74.0 4.2 84 1-90 242-326 (416)
150 3cb4_D GTP-binding protein LEP 99.0 6.1E-10 2.1E-14 74.7 6.4 79 1-89 101-182 (599)
151 1g7s_A Translation initiation 99.0 1.3E-09 4.6E-14 73.0 8.0 28 61-88 190-217 (594)
152 2hjg_A GTP-binding protein ENG 99.0 1E-09 3.5E-14 71.1 7.1 76 1-89 89-165 (436)
153 3izy_P Translation initiation 99.0 4.7E-10 1.6E-14 74.5 5.5 83 1-88 82-167 (537)
154 3ec1_A YQEH GTPase; atnos1, at 99.0 1.6E-10 5.4E-15 73.6 2.2 80 1-88 78-161 (369)
155 2hf9_A Probable hydrogenase ni 99.0 3.1E-10 1.1E-14 67.2 3.2 59 29-90 165-225 (226)
156 1ega_A Protein (GTP-binding pr 99.0 1E-09 3.6E-14 68.1 5.6 80 1-89 95-175 (301)
157 2aka_B Dynamin-1; fusion prote 98.9 8.3E-10 2.8E-14 67.8 3.5 81 1-86 169-250 (299)
158 2wsm_A Hydrogenase expression/ 98.9 5.3E-10 1.8E-14 65.9 2.4 59 28-89 154-214 (221)
159 1kk1_A EIF2gamma; initiation o 98.9 8.8E-10 3E-14 70.9 3.4 58 29-88 138-199 (410)
160 1nrj_B SR-beta, signal recogni 98.9 4.4E-11 1.5E-15 70.4 -2.7 46 1-46 89-138 (218)
161 1wb1_A Translation elongation 98.9 1.3E-09 4.4E-14 71.5 3.8 59 28-88 125-188 (482)
162 1puj_A YLQF, conserved hypothe 98.9 8.5E-10 2.9E-14 68.0 2.6 76 1-88 30-105 (282)
163 1mky_A Probable GTP-binding pr 98.8 2.1E-09 7.3E-14 69.6 3.7 77 1-89 88-166 (439)
164 1yrb_A ATP(GTP)binding protein 98.8 4.7E-10 1.6E-14 67.8 0.4 27 63-89 231-257 (262)
165 3tr5_A RF-3, peptide chain rel 98.8 1.1E-08 3.7E-13 67.9 6.4 26 63-88 251-276 (528)
166 1zo1_I IF2, translation initia 98.8 6.2E-09 2.1E-13 68.6 3.9 58 28-86 103-164 (501)
167 2qag_A Septin-2, protein NEDD5 98.7 2.5E-09 8.6E-14 67.9 1.8 61 27-89 173-233 (361)
168 4dcu_A GTP-binding protein ENG 98.7 2.2E-08 7.6E-13 65.2 5.3 76 1-88 109-184 (456)
169 3p32_A Probable GTPase RV1496/ 98.7 2.6E-09 9E-14 67.6 0.4 63 27-89 216-284 (355)
170 2c78_A Elongation factor TU-A; 98.7 1.9E-08 6.4E-13 64.6 4.2 83 1-88 105-211 (405)
171 1jny_A EF-1-alpha, elongation 98.7 7E-09 2.4E-13 67.2 1.9 77 1-80 114-204 (435)
172 2elf_A Protein translation elo 98.6 5.3E-08 1.8E-12 62.1 5.7 79 1-88 90-179 (370)
173 3t5d_A Septin-7; GTP-binding p 98.6 2.1E-09 7.2E-14 65.7 -1.3 59 28-87 144-202 (274)
174 1d2e_A Elongation factor TU (E 98.6 2.9E-08 9.8E-13 63.7 3.5 83 1-88 96-194 (397)
175 1pui_A ENGB, probable GTP-bind 98.6 8.6E-08 3E-12 55.9 5.2 59 28-89 137-199 (210)
176 3j2k_7 ERF3, eukaryotic polype 98.6 1.1E-07 3.7E-12 61.8 5.5 54 28-81 154-217 (439)
177 2ged_A SR-beta, signal recogni 98.6 6.3E-08 2.2E-12 55.7 4.0 53 1-53 125-181 (193)
178 3avx_A Elongation factor TS, e 98.5 5.5E-08 1.9E-12 69.5 3.9 83 1-88 389-485 (1289)
179 1zun_B Sulfate adenylate trans 98.5 1.5E-07 5.1E-12 61.0 5.7 75 1-79 134-214 (434)
180 2p67_A LAO/AO transport system 98.5 1.3E-07 4.5E-12 59.6 4.4 61 28-88 194-260 (341)
181 3p26_A Elongation factor 1 alp 98.5 9E-08 3.1E-12 62.8 3.7 50 29-78 172-227 (483)
182 2xtp_A GTPase IMAP family memb 98.5 8E-08 2.7E-12 58.1 3.3 85 1-90 112-209 (260)
183 3mca_A HBS1, elongation factor 98.5 1.3E-07 4.5E-12 63.5 4.1 60 28-87 314-395 (592)
184 2j69_A Bacterial dynamin-like 98.4 3.4E-07 1.2E-11 62.5 4.6 85 1-89 207-325 (695)
185 2dy1_A Elongation factor G; tr 98.4 9.6E-07 3.3E-11 60.0 6.4 26 63-88 248-273 (665)
186 2x2e_A Dynamin-1; nitration, h 98.4 1E-07 3.5E-12 60.2 1.6 58 27-85 196-254 (353)
187 2www_A Methylmalonic aciduria 98.4 4.3E-07 1.5E-11 57.5 4.3 61 28-88 212-278 (349)
188 1r5b_A Eukaryotic peptide chai 98.3 4.6E-08 1.6E-12 64.0 -0.5 53 28-80 180-243 (467)
189 3izq_1 HBS1P, elongation facto 98.3 7.1E-08 2.4E-12 65.0 0.1 51 29-79 306-362 (611)
190 2h5e_A Peptide chain release f 98.3 1.4E-06 4.7E-11 57.9 5.6 26 63-88 252-277 (529)
191 3zvr_A Dynamin-1; hydrolase, D 98.3 4.8E-07 1.6E-11 62.4 3.2 59 27-86 216-275 (772)
192 2qnr_A Septin-2, protein NEDD5 98.2 5.5E-08 1.9E-12 60.4 -1.7 56 28-89 155-214 (301)
193 1f60_A Elongation factor EEF1A 98.2 3.3E-07 1.1E-11 59.8 1.6 52 28-79 144-202 (458)
194 1dar_A EF-G, elongation factor 98.2 1.1E-05 3.7E-10 55.2 9.0 26 63-88 256-281 (691)
195 3cnl_A YLQF, putative uncharac 98.2 3E-07 1E-11 56.1 1.0 53 28-86 46-98 (262)
196 1jwy_B Dynamin A GTPase domain 98.2 2.3E-06 7.9E-11 52.9 4.6 61 27-89 197-262 (315)
197 1t9h_A YLOQ, probable GTPase E 98.1 1.9E-07 6.5E-12 58.3 -0.8 52 27-83 116-171 (307)
198 3lxw_A GTPase IMAP family memb 98.1 1.6E-06 5.3E-11 52.4 2.1 85 1-90 112-209 (247)
199 2rcn_A Probable GTPase ENGC; Y 98.1 2.8E-06 9.7E-11 54.0 3.3 54 28-83 160-213 (358)
200 2xex_A Elongation factor G; GT 98.0 7.2E-05 2.5E-09 51.2 9.2 26 63-88 254-279 (693)
201 2rdo_7 EF-G, elongation factor 97.9 8.8E-05 3E-09 50.9 8.4 26 63-88 262-287 (704)
202 3vqt_A RF-3, peptide chain rel 97.9 6.6E-05 2.3E-09 50.2 7.6 26 63-88 269-294 (548)
203 2qm8_A GTPase/ATPase; G protei 97.8 4.1E-05 1.4E-09 48.2 5.3 60 29-88 194-260 (337)
204 3lxx_A GTPase IMAP family memb 97.8 4.8E-06 1.7E-10 49.7 1.0 58 28-90 145-215 (239)
205 2qag_C Septin-7; cell cycle, c 97.7 4.3E-06 1.5E-10 54.2 0.1 64 15-87 159-225 (418)
206 3t34_A Dynamin-related protein 97.5 8.1E-06 2.8E-10 51.6 -1.3 54 27-84 202-256 (360)
207 3j25_A Tetracycline resistance 97.4 0.00049 1.7E-08 46.8 6.0 26 63-88 213-238 (638)
208 1wxq_A GTP-binding protein; st 97.1 1.5E-05 5E-10 51.4 -3.0 49 28-81 214-262 (397)
209 4fn5_A EF-G 1, elongation fact 96.8 0.0069 2.4E-07 41.7 7.7 26 63-88 265-290 (709)
210 2qpt_A EH domain-containing pr 96.1 0.0018 6.3E-08 43.3 1.5 38 1-42 195-232 (550)
211 4a9a_A Ribosome-interacting GT 96.0 0.033 1.1E-06 35.7 6.6 52 27-88 248-299 (376)
212 2dby_A GTP-binding protein; GD 95.9 0.0085 2.9E-07 38.3 3.7 47 27-78 200-251 (368)
213 1jal_A YCHF protein; nucleotid 95.0 0.074 2.5E-06 34.0 5.6 57 26-87 197-277 (363)
214 1h65_A Chloroplast outer envel 94.7 0.023 7.8E-07 34.4 2.7 14 29-42 155-168 (270)
215 3def_A T7I23.11 protein; chlor 94.7 0.017 5.8E-07 34.8 2.1 13 29-41 152-164 (262)
216 1n0u_A EF-2, elongation factor 93.7 0.031 1.1E-06 39.3 2.0 36 1-41 128-163 (842)
217 1tq4_A IIGP1, interferon-induc 92.8 0.059 2E-06 35.0 2.2 62 28-89 175-253 (413)
218 2j37_W Signal recognition part 92.8 0.28 9.6E-06 32.7 5.4 58 29-86 240-310 (504)
219 1ni3_A YCHF GTPase, YCHF GTP-b 86.5 3 0.0001 26.9 6.2 58 27-87 223-305 (392)
220 4a9a_A Ribosome-interacting GT 77.8 1.4 4.7E-05 28.3 2.2 39 1-41 156-195 (376)
221 2qag_B Septin-6, protein NEDD5 74.1 0.37 1.3E-05 31.5 -1.2 16 27-42 175-190 (427)
222 2cos_A Serine/threonine protei 74.0 1.9 6.5E-05 19.9 1.5 20 68-87 30-49 (54)
223 1wgn_A UBAP1, ubiquitin associ 73.9 2.1 7.3E-05 20.3 1.7 18 71-88 42-59 (63)
224 3dm5_A SRP54, signal recogniti 65.7 9.9 0.00034 25.0 4.1 12 30-41 241-252 (443)
225 1ko7_A HPR kinase/phosphatase; 59.8 6.1 0.00021 24.8 2.3 51 28-88 80-130 (314)
226 2v3c_C SRP54, signal recogniti 50.1 2.6 8.8E-05 27.5 -0.6 56 31-86 241-308 (432)
227 3fpr_A Evasin-1; novel fold, g 43.0 20 0.00068 18.4 2.2 15 26-40 9-23 (100)
228 3pzx_A Formate--tetrahydrofola 41.5 48 0.0016 22.7 4.3 58 27-89 373-430 (557)
229 2pd2_A Hypothetical protein ST 39.5 38 0.0013 17.0 3.3 34 1-36 4-37 (108)
230 2jvf_A De novo protein M7; tet 37.7 15 0.0005 18.0 1.2 25 65-89 51-75 (96)
231 2pzz_A UPF0201 protein MJ1564; 37.7 22 0.00076 19.7 2.1 20 65-84 105-124 (147)
232 2crn_A Ubash3A protein; compac 37.4 23 0.00079 16.6 1.9 16 73-88 35-50 (64)
233 3ktb_A Arsenical resistance op 37.1 36 0.0012 17.9 2.7 38 17-54 64-102 (106)
234 4ae4_A Ubiquitin-associated pr 33.8 24 0.00082 18.8 1.7 17 71-87 31-47 (118)
235 2g3q_A Protein YBL047C; endocy 33.6 21 0.00073 15.0 1.3 15 72-86 28-42 (43)
236 2ekk_A UBA domain from E3 ubiq 33.5 26 0.00089 15.1 1.6 13 73-86 34-46 (47)
237 4e6n_A Metallophosphoesterase; 33.2 56 0.0019 21.5 3.6 23 1-23 301-323 (427)
238 3zth_A STU0660; DNA binding, c 33.1 64 0.0022 20.6 3.7 63 6-73 177-242 (350)
239 2ohf_A Protein OLA1, GTP-bindi 32.5 38 0.0013 21.9 2.8 58 27-87 221-303 (396)
240 2dak_A Ubiquitin carboxyl-term 30.6 31 0.0011 15.9 1.7 17 72-88 33-49 (63)
241 2ale_A SNU13, NHP2/L7AE family 30.1 46 0.0016 18.0 2.5 19 71-89 105-123 (134)
242 2dai_A Ubadc1, ubiquitin assoc 29.9 51 0.0017 16.3 2.5 17 72-88 53-69 (83)
243 2jnb_A NHP2-like protein 1; sp 29.2 52 0.0018 18.1 2.7 18 71-88 123-140 (144)
244 3sop_A Neuronal-specific septi 28.9 15 0.00052 22.2 0.5 14 29-42 141-154 (270)
245 2dag_A Ubiquitin carboxyl-term 27.3 44 0.0015 16.1 1.9 17 72-88 34-50 (74)
246 4hn3_A LMO1757 protein; struct 26.8 75 0.0026 20.4 3.3 25 15-39 181-205 (350)
247 2eo2_A Adult MALE hypothalamus 22.8 68 0.0023 15.5 2.0 20 35-55 42-61 (71)
248 1ify_A HHR23A, UV excision rep 21.6 56 0.0019 14.2 1.6 15 72-86 32-46 (49)
249 3n2q_A Sex pheromone staph-CAM 21.6 1.2E+02 0.0042 18.8 3.5 26 14-39 115-140 (287)
250 1whc_A RSGI RUH-027, UBA/UBX 3 21.5 75 0.0026 14.7 2.2 16 73-88 35-50 (64)
No 1
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.85 E-value=1.4e-20 Score=108.98 Aligned_cols=91 Identities=27% Similarity=0.491 Sum_probs=72.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++++++.....|+..++......+.|+++|+||+|+.+....+++.+.++.......++++++|||++|.||+++|
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 169 (181)
T 1fzq_A 90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 169 (181)
T ss_dssp EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHH
Confidence 58999999999998899888765444679999999999998766667777766544334456889999999999999999
Q ss_pred HHHHHhhhhcC
Q psy2977 81 QWLIAHSKSHT 91 (92)
Q Consensus 81 ~~l~~~i~~~~ 91 (92)
+||.+.+.+++
T Consensus 170 ~~l~~~~~~~~ 180 (181)
T 1fzq_A 170 NWVCKNVNAKK 180 (181)
T ss_dssp HHHHHTC----
T ss_pred HHHHHHHHhcc
Confidence 99999987654
No 2
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.84 E-value=4.1e-20 Score=104.80 Aligned_cols=90 Identities=27% Similarity=0.529 Sum_probs=72.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++++++.....|+..++......+.|+++|+||+|+.+....+++.+.++.......++++++|||++|.|++++|
T Consensus 74 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 58999999999998999988865444679999999999998766667777766644444456889999999999999999
Q ss_pred HHHHHhhhhc
Q psy2977 81 QWLIAHSKSH 90 (92)
Q Consensus 81 ~~l~~~i~~~ 90 (92)
++|.+.+.++
T Consensus 154 ~~l~~~i~~~ 163 (164)
T 1r8s_A 154 DWLSNQLRNQ 163 (164)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHhhc
Confidence 9999998765
No 3
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=1.4e-19 Score=104.30 Aligned_cols=90 Identities=31% Similarity=0.546 Sum_probs=75.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.+++....|+..++......+.|+++|+||+|+.+..+.+++.+.++.......++++++|||++|.|++++|
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 171 (183)
T 1moz_A 92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 171 (183)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHH
Confidence 57999999999999999998875445679999999999998766777787777655444556789999999999999999
Q ss_pred HHHHHhhhhc
Q psy2977 81 QWLIAHSKSH 90 (92)
Q Consensus 81 ~~l~~~i~~~ 90 (92)
++|.+.+.++
T Consensus 172 ~~l~~~~~~~ 181 (183)
T 1moz_A 172 DWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 4
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=110.71 Aligned_cols=89 Identities=15% Similarity=0.209 Sum_probs=75.0
Q ss_pred CeeCCchhhHHHHHHHH---HHhhcCCC-CCCCcEEEEeeCC-CCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCC
Q psy2977 1 MVDAADTDKLEASRNEL---HALIEKPQ-LIGIPILVLGNKR-DLPNALDEKELIDRMNLCAIQDREICCYSISCKERDN 75 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~---~~~~~~~~-~~~~p~ilv~NK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 75 (92)
|||++|.++++ ++.++ ..++.+.. +.+.|++|++||+ |++.+.+..++.+.+++..+ .+.|.++.|||+||+|
T Consensus 132 VVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeG 209 (227)
T 3l82_B 132 VANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTG 209 (227)
T ss_dssp EEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTT
T ss_pred EeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcC
Confidence 68999988765 67777 45565543 4789999999995 89999999999999998876 5799999999999999
Q ss_pred HHHHHHHHHHhhhhcC
Q psy2977 76 IDITLQWLIAHSKSHT 91 (92)
Q Consensus 76 i~~~~~~l~~~i~~~~ 91 (92)
+.+.++||.+.+++++
T Consensus 210 L~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 210 FLNGIEWILEEVESKR 225 (227)
T ss_dssp HHHHHHHHTTTTTTC-
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999997654
No 5
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.82 E-value=1.3e-19 Score=105.83 Aligned_cols=89 Identities=26% Similarity=0.479 Sum_probs=74.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++++++.....|+..++......+.|+++|+||+|+.+....+++.+.++.......++++++|||++|.||+++|
T Consensus 103 v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 182 (192)
T 2b6h_A 103 VVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGL 182 (192)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHH
Confidence 58999999999999999988865444679999999999998766667777776654444556889999999999999999
Q ss_pred HHHHHhhhh
Q psy2977 81 QWLIAHSKS 89 (92)
Q Consensus 81 ~~l~~~i~~ 89 (92)
++|.+.+.+
T Consensus 183 ~~l~~~i~~ 191 (192)
T 2b6h_A 183 DWLSHELSK 191 (192)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHhc
Confidence 999998865
No 6
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.82 E-value=2.5e-19 Score=103.95 Aligned_cols=91 Identities=27% Similarity=0.522 Sum_probs=75.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++++++.....|+..++......+.|+++|+||+|+.+....+++.+.++.......++++++|||++|.|++++|
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (189)
T 2x77_A 96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM 175 (189)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHH
Confidence 58999999999998999998876555689999999999998766667777766544444556789999999999999999
Q ss_pred HHHHHhhhhcC
Q psy2977 81 QWLIAHSKSHT 91 (92)
Q Consensus 81 ~~l~~~i~~~~ 91 (92)
++|.+.+.++.
T Consensus 176 ~~l~~~i~~~~ 186 (189)
T 2x77_A 176 DWLVERLREQG 186 (189)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhcc
Confidence 99999987654
No 7
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.82 E-value=2.1e-19 Score=102.40 Aligned_cols=90 Identities=29% Similarity=0.540 Sum_probs=74.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.++.....|+..++......+.|+++|+||+|+.+..+..++.+.++.......+++++++||++|.|++++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 160 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHH
Confidence 58999999999998999888865444679999999999998766667777766544444567899999999999999999
Q ss_pred HHHHHhhhhc
Q psy2977 81 QWLIAHSKSH 90 (92)
Q Consensus 81 ~~l~~~i~~~ 90 (92)
++|.+.+.++
T Consensus 161 ~~l~~~i~~~ 170 (171)
T 1upt_A 161 EWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhc
Confidence 9999998754
No 8
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.82 E-value=2.6e-19 Score=103.55 Aligned_cols=90 Identities=26% Similarity=0.481 Sum_probs=74.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.+++....|+.+++......+.|+++|+||+|+.+....+++.+.++.......++++++|||++|.|++++|
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 171 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 171 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHH
Confidence 58999999999998999988875444679999999999998766777777766544333457889999999999999999
Q ss_pred HHHHHhhhhc
Q psy2977 81 QWLIAHSKSH 90 (92)
Q Consensus 81 ~~l~~~i~~~ 90 (92)
++|.+.+.++
T Consensus 172 ~~l~~~i~~~ 181 (186)
T 1ksh_A 172 DWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 9999988754
No 9
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.81 E-value=3.2e-19 Score=103.64 Aligned_cols=91 Identities=81% Similarity=1.285 Sum_probs=72.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++++++.....|+..++......++|+++|+||+|+....+.+++.+.++........+.+++|||++|.||+++|
T Consensus 97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 176 (188)
T 1zd9_A 97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 176 (188)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHH
Confidence 58999999999998999988765334679999999999998766666776666543333456789999999999999999
Q ss_pred HHHHHhhhhcC
Q psy2977 81 QWLIAHSKSHT 91 (92)
Q Consensus 81 ~~l~~~i~~~~ 91 (92)
++|.+.+.+++
T Consensus 177 ~~l~~~~~~~~ 187 (188)
T 1zd9_A 177 QWLIQHSKSRR 187 (188)
T ss_dssp HHHHHTCC---
T ss_pred HHHHHHHHhhc
Confidence 99999887653
No 10
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=3.4e-19 Score=103.27 Aligned_cols=89 Identities=20% Similarity=0.414 Sum_probs=73.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++++++....|+..++......+.|+++|+||+|+.+..+.+++.+.++.......++++++|||++|.|++++|
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 169 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 169 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHH
Confidence 58999999999999999998875334579999999999998766677777766544334456899999999999999999
Q ss_pred HHHHHhhhh
Q psy2977 81 QWLIAHSKS 89 (92)
Q Consensus 81 ~~l~~~i~~ 89 (92)
++|.+.+..
T Consensus 170 ~~l~~~~~~ 178 (187)
T 1zj6_A 170 EWMMSRLKI 178 (187)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 999998864
No 11
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.81 E-value=4.6e-19 Score=103.32 Aligned_cols=87 Identities=34% Similarity=0.528 Sum_probs=70.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCC-------cCCCceEEEeeccccC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCA-------IQDREICCYSISCKER 73 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~SA~~~ 73 (92)
|+|++++++++....|+..++......+.|+++|+||+|++...+.+++.+.++... ....++++++|||++|
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 176 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR 176 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcC
Confidence 589999999999999999887654446799999999999987667777877665322 1124578999999999
Q ss_pred CCHHHHHHHHHHhh
Q psy2977 74 DNIDITLQWLIAHS 87 (92)
Q Consensus 74 ~gi~~~~~~l~~~i 87 (92)
+||+++|+||.+.+
T Consensus 177 ~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 177 NGYLEAFQWLSQYI 190 (190)
T ss_dssp BSHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998754
No 12
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.81 E-value=6.2e-19 Score=102.42 Aligned_cols=90 Identities=22% Similarity=0.428 Sum_probs=72.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCC--CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQL--IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++.....|+..++..... .++|+++|+||+|+.+..+.+++.+.+.+..+...++.+++|||++|.||++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 176 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQE 176 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHH
Confidence 58999999999998999988876444 5799999999999987667777777665443334568899999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.+.
T Consensus 177 l~~~l~~~i~~~ 188 (190)
T 2h57_A 177 GVDWLQDQIQTV 188 (190)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 13
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.80 E-value=4.7e-19 Score=103.92 Aligned_cols=87 Identities=30% Similarity=0.556 Sum_probs=70.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCC---------cC---CCceEEEee
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCA---------IQ---DREICCYSI 68 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~ 68 (92)
|+|+++++++.....|+.+++......++|+++|+||+|++...+.+++.+.++... +. ...+++++|
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMC 178 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEE
Confidence 589999999999999999988654446799999999999987667777777665321 11 245789999
Q ss_pred ccccCCCHHHHHHHHHHhh
Q psy2977 69 SCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 69 SA~~~~gi~~~~~~l~~~i 87 (92)
||++|+||+++|+||.+.+
T Consensus 179 SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 179 SVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp BTTTTBSHHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 9999999999999998765
No 14
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.80 E-value=4e-19 Score=102.60 Aligned_cols=87 Identities=20% Similarity=0.418 Sum_probs=71.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++++++....|+..++......++|+++|+||+|+......+++.+.++.......++.+++|||++|.||+++|
T Consensus 95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 174 (181)
T 2h17_A 95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174 (181)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHH
Confidence 58999999999998999988865334679999999999998766777777776554444556789999999999999999
Q ss_pred HHHHHhh
Q psy2977 81 QWLIAHS 87 (92)
Q Consensus 81 ~~l~~~i 87 (92)
++|.+.+
T Consensus 175 ~~l~~~l 181 (181)
T 2h17_A 175 EWMMSRL 181 (181)
T ss_dssp HHHHTC-
T ss_pred HHHHhhC
Confidence 9998753
No 15
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.80 E-value=1.5e-19 Score=105.31 Aligned_cols=90 Identities=20% Similarity=0.409 Sum_probs=73.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCC-------CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCc-CCCceEEEeecccc
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQL-------IGIPILVLGNKRDLPNALDEKELIDRMNLCAI-QDREICCYSISCKE 72 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~-------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~SA~~ 72 (92)
|+|++++++|.....|+..++..... .++|+++|+||+|+......+++.+.+++... ...++++++|||++
T Consensus 93 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 172 (199)
T 4bas_A 93 VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLK 172 (199)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTT
T ss_pred EEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCC
Confidence 68999999999999999988764221 27899999999999877677777776654332 34578999999999
Q ss_pred CCCHHHHHHHHHHhhhhc
Q psy2977 73 RDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 73 ~~gi~~~~~~l~~~i~~~ 90 (92)
|.||+++|++|.+.+.++
T Consensus 173 g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 173 GTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 999999999999988654
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=108.47 Aligned_cols=90 Identities=27% Similarity=0.529 Sum_probs=76.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|||++++.+|.....|+..++......++|+++|+||+|+++....+++...++.......++++++|||++|.||+++|
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~ 318 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 318 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHH
Confidence 68999999999998899888876555689999999999998877778888887766555567899999999999999999
Q ss_pred HHHHHhhhhc
Q psy2977 81 QWLIAHSKSH 90 (92)
Q Consensus 81 ~~l~~~i~~~ 90 (92)
++|.+.+.++
T Consensus 319 ~~l~~~l~~~ 328 (329)
T 3o47_A 319 DWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 17
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.78 E-value=3.3e-19 Score=109.91 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=73.6
Q ss_pred CeeCCchhhHHHHHHHHH---HhhcCCC-CCCCcEEEEeeC-CCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCC
Q psy2977 1 MVDAADTDKLEASRNELH---ALIEKPQ-LIGIPILVLGNK-RDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDN 75 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~---~~~~~~~-~~~~p~ilv~NK-~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 75 (92)
|||++|.++++ ++.++. .++.+.. ..+.|++|++|| .|++++.+..++.+.+++..+ .+.|.++.|||.||+|
T Consensus 217 VVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l-~r~W~Iq~csA~tGeG 294 (312)
T 3l2o_B 217 VANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTG 294 (312)
T ss_dssp CCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTT
T ss_pred EecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccC-CCcEEEEecccCCCcC
Confidence 78999998876 556555 4554332 468999999996 699999999999999998776 4789999999999999
Q ss_pred HHHHHHHHHHhhhhcC
Q psy2977 76 IDITLQWLIAHSKSHT 91 (92)
Q Consensus 76 i~~~~~~l~~~i~~~~ 91 (92)
+.+.++||.+.+++++
T Consensus 295 L~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 295 FLNGIEWILEEVESKR 310 (312)
T ss_dssp HHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999997653
No 18
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.77 E-value=2.6e-18 Score=112.37 Aligned_cols=90 Identities=32% Similarity=0.584 Sum_probs=76.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|||++++.+|.....|+.+++......++|++||+||+|+.+..+.+++...++........+++++|||++|+||+++|
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 475 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 475 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHH
Confidence 68999999999999999998876555689999999999998777778888877765555567889999999999999999
Q ss_pred HHHHHhhhhc
Q psy2977 81 QWLIAHSKSH 90 (92)
Q Consensus 81 ~~l~~~i~~~ 90 (92)
+||.+.+.++
T Consensus 476 ~~l~~~~~~~ 485 (497)
T 3lvq_E 476 TWLTSNYKSK 485 (497)
T ss_dssp HHHHHHCC--
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 19
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.77 E-value=6.9e-19 Score=104.94 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=64.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++|+.+..|+..+.... ..++|++||+||+|+.+ ..+.++..+... ..++.+++|||++|.||++
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~-----~~~~~~~e~SAktg~nV~e 165 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAK-----ELNVMFIETSAKAGYNVKQ 165 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEEBTTTTBSHHH
T ss_pred EeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHH-----HhCCeeEEEeCCCCcCHHH
Confidence 589999999999999998887642 25789999999999964 345555444321 2356799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|++.+..
T Consensus 166 ~F~~i~~~i~~ 176 (216)
T 4dkx_A 166 LFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 99999998854
No 20
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.76 E-value=7.8e-18 Score=95.53 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=65.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++++....|+..+.......++|+++|+||+|+.+. ...++...... ..+.+++++||++|.|+++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----VFDCKFIETSAALHHNVQA 153 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH-----HTTCEEEECBGGGTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH-----HhCCcEEEeccCCCCCHHH
Confidence 5799999999999999988887654567999999999999743 23333333221 2346899999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.++
T Consensus 154 l~~~l~~~~~~~ 165 (166)
T 3q72_A 154 LFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999998765
No 21
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.75 E-value=6.1e-18 Score=96.21 Aligned_cols=85 Identities=14% Similarity=0.141 Sum_probs=67.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++++....|+.++.......++|+++|+||+|+.+ ..+.++...... ..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH-----HcCCcEEEecCccCCCHHH
Confidence 589999999999999999887754445799999999999963 334444433321 2356899999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+..+
T Consensus 157 l~~~l~~~i~~~ 168 (169)
T 3q85_A 157 LFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999998765
No 22
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.75 E-value=1.4e-17 Score=96.65 Aligned_cols=87 Identities=10% Similarity=0.126 Sum_probs=67.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCC----CCCCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP----NALDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|||++++.+|+.+..|+..+.......+.|+++|+||+|+. ...+.++..+.... .....+++|||++|.||
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 92 VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD----LKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH----TTTCEEEEEBTTTTBTH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH----cCCCeEEEecCCCCCCH
Confidence 58999999999988999998765444579999999999994 23344444443321 12367999999999999
Q ss_pred HHHHHHHHHhhhhcC
Q psy2977 77 DITLQWLIAHSKSHT 91 (92)
Q Consensus 77 ~~~~~~l~~~i~~~~ 91 (92)
+++|++|.+.+.+++
T Consensus 168 ~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 168 ERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887643
No 23
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=8.9e-18 Score=99.79 Aligned_cols=85 Identities=18% Similarity=0.168 Sum_probs=63.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|||++++++|+.+..|+..+.......++|+++|+||+|+.. ....++..... ...++++++|||++|.||++
T Consensus 118 Vydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a-----~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 118 VYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACA-----VVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 589999999999888887776432234799999999999964 23333322211 12246799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|++.+..+
T Consensus 193 lf~~l~~~i~~~ 204 (211)
T 2g3y_A 193 LFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988543
No 24
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=95.48 Aligned_cols=85 Identities=18% Similarity=0.170 Sum_probs=63.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++....|+..+.......++|+++|+||+|+.+. .+.++..... ...++++++|||++|.||++
T Consensus 84 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~~ 158 (175)
T 2nzj_A 84 VYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACA-----VVFDCKFIETSATLQHNVAE 158 (175)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHHTSEEEECBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHH-----HHcCCeEEEEecCCCCCHHH
Confidence 5899999999998888888776533457999999999999753 3333333221 12246799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.++
T Consensus 159 l~~~l~~~~~~~ 170 (175)
T 2nzj_A 159 LFEGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988653
No 25
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.73 E-value=4.4e-17 Score=94.48 Aligned_cols=83 Identities=22% Similarity=0.244 Sum_probs=66.5
Q ss_pred CeeCC------chhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCce-EEEeeccccC
Q psy2977 1 MVDAA------DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREI-CCYSISCKER 73 (92)
Q Consensus 1 v~D~s------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~SA~~~ 73 (92)
|+|++ +.+++..+..|+.++.. ...++|+++|+||+|+.+..+.+++.+.+. ..++ +++++||++|
T Consensus 104 v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 176 (198)
T 3t1o_A 104 VADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPDALPVEMVRAVVD-----PEGKFPVLEAVATEG 176 (198)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTTCCCHHHHHHHHC-----TTCCSCEEECBGGGT
T ss_pred EEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhcccccCHHHHHHHHH-----hcCCceEEEEecCCC
Confidence 57888 55677777788887732 346799999999999988777777777654 2345 7999999999
Q ss_pred CCHHHHHHHHHHhhhhc
Q psy2977 74 DNIDITLQWLIAHSKSH 90 (92)
Q Consensus 74 ~gi~~~~~~l~~~i~~~ 90 (92)
.||+++|++|.+.+.++
T Consensus 177 ~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 177 KGVFETLKEVSRLVLAR 193 (198)
T ss_dssp BTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999999999988654
No 26
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.72 E-value=3.5e-17 Score=95.77 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=65.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+|..+..|+.++.......++|+++|+||+|+... .+.++...... ..+..+++|||++|.||++
T Consensus 103 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 103 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCKHIETSAALHHNTRE 177 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEEEBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHH-----HhCCEEEEEcCCCCCCHHH
Confidence 5899999999999999988876433357999999999999743 34444433221 1246799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+..+
T Consensus 178 lf~~l~~~i~~~ 189 (195)
T 3cbq_A 178 LFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 27
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.70 E-value=2.9e-17 Score=92.96 Aligned_cols=84 Identities=19% Similarity=0.329 Sum_probs=65.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++....|+..+.......++|+++|+||+|+.+ ....++...... ..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKTRANVDK 156 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHH
Confidence 579999999999888888877643345799999999999964 234444444321 2346799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|+||.+.+.+
T Consensus 157 l~~~l~~~i~~ 167 (168)
T 1u8z_A 157 VFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 28
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.70 E-value=4.2e-17 Score=93.91 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=65.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccc-cCCCHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCK-ERDNID 77 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~-~~~gi~ 77 (92)
|+|++++.+++....|+..+.......++|+++|+||+|+.+ ....++...... ..+++++++||+ +|.||+
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~~v~ 170 (183)
T 3kkq_A 96 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNIPYIETSAKDPPLNVD 170 (183)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTCCEEEEBCSSSCBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-----HhCCeEEEeccCCCCCCHH
Confidence 589999999999888888876543345789999999999975 334444443322 224679999999 999999
Q ss_pred HHHHHHHHhhhh
Q psy2977 78 ITLQWLIAHSKS 89 (92)
Q Consensus 78 ~~~~~l~~~i~~ 89 (92)
++|++|.+.+.+
T Consensus 171 ~l~~~l~~~i~~ 182 (183)
T 3kkq_A 171 KTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
No 29
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.70 E-value=5.4e-17 Score=93.62 Aligned_cols=84 Identities=21% Similarity=0.291 Sum_probs=64.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL-DEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++++.++.....|+..+.......+.|+++|+||+|+.... ..++...... ..+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~~l 156 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR-----SYGIPFIETSAKTRQGVDDA 156 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH-----HHTCCEEECCTTTCTTHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHH
Confidence 57999999999988888887764445679999999999997533 3333333221 22457999999999999999
Q ss_pred HHHHHHhhhh
Q psy2977 80 LQWLIAHSKS 89 (92)
Q Consensus 80 ~~~l~~~i~~ 89 (92)
|++|.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (189)
T 4dsu_A 157 FYTLVREIRK 166 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 30
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.69 E-value=8.7e-17 Score=94.35 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=65.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCce-EEEeeccccCCCHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREI-CCYSISCKERDNID 77 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~SA~~~~gi~ 77 (92)
|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+ ..+.+++.+... ..++ .+++|||++|.||+
T Consensus 108 v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~~SA~~g~gi~ 181 (201)
T 2hup_A 108 AYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAE-----HYDILCAIETSAKDSSNVE 181 (201)
T ss_dssp EEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCSEEEECBTTTTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHH-----HcCCCEEEEEeCCCCCCHH
Confidence 689999999999888988877542 25789999999999964 334455544332 1245 79999999999999
Q ss_pred HHHHHHHHhhhhc
Q psy2977 78 ITLQWLIAHSKSH 90 (92)
Q Consensus 78 ~~~~~l~~~i~~~ 90 (92)
++|++|.+.+.++
T Consensus 182 ~l~~~l~~~i~~~ 194 (201)
T 2hup_A 182 EAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 31
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.69 E-value=8.6e-17 Score=91.09 Aligned_cols=84 Identities=12% Similarity=0.174 Sum_probs=63.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++....|+..+.......+.|+++|+||+|+.+. ...++....... ..+.+++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ----WCNCAFLESSAKSKINVNE 156 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----TTSCEEEECBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH----ccCCcEEEecCCCCCCHHH
Confidence 5799999999988888877765433457999999999999642 234444433211 1256799999999999999
Q ss_pred HHHHHHHhhh
Q psy2977 79 TLQWLIAHSK 88 (92)
Q Consensus 79 ~~~~l~~~i~ 88 (92)
+|++|.+.+.
T Consensus 157 l~~~l~~~i~ 166 (167)
T 1c1y_A 157 IFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998874
No 32
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.69 E-value=1.8e-16 Score=92.58 Aligned_cols=84 Identities=18% Similarity=0.175 Sum_probs=61.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|||++++++|+....|+..+.......++|+++|+||+|+.. ....++..... ...+.++++|||++|.||++
T Consensus 87 v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a-----~~~~~~~~e~SA~~g~~v~~ 161 (192)
T 2cjw_A 87 VYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXA-----VVFDXKFIETSAAVQHNVKE 161 (192)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHH-----HHhCCceEEeccccCCCHHH
Confidence 589999999999888877665432235789999999999863 22333322211 11245789999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|++.+..
T Consensus 162 lf~~l~~~~~~ 172 (192)
T 2cjw_A 162 LFEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 33
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.68 E-value=3.8e-16 Score=89.53 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=61.3
Q ss_pred CeeCCchhhHHHHHHHHHH---hhcCCCCCCCcEEEEeeCCCCCC----CCCHHHHHHhhccCCcCCCceEEEeeccccC
Q psy2977 1 MVDAADTDKLEASRNELHA---LIEKPQLIGIPILVLGNKRDLPN----ALDEKELIDRMNLCAIQDREICCYSISCKER 73 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~---~~~~~~~~~~p~ilv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 73 (92)
|+|+++++++.....|+.. +... ...++|+++|+||+|+.. ..+.++..+... ...++++++|||++|
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~ 153 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGE-GRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYG 153 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCS-SSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEecccc
Confidence 6899999999988876443 3322 235789999999999942 234444443321 112578999999999
Q ss_pred CCHHHHHHHHHHhhhh
Q psy2977 74 DNIDITLQWLIAHSKS 89 (92)
Q Consensus 74 ~gi~~~~~~l~~~i~~ 89 (92)
.||+++|++|.+.+.+
T Consensus 154 ~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 154 LNVDRVFQEVAQKVVT 169 (178)
T ss_dssp BTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998864
No 34
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.68 E-value=5.8e-17 Score=93.26 Aligned_cols=85 Identities=19% Similarity=0.322 Sum_probs=66.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++.....|+..+.......++|+++|+||+|+.+ ....+++.+... ..+++++++||++|.||++
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHH
Confidence 589999999999888888877643335799999999999964 234445444332 2346799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.++
T Consensus 171 l~~~l~~~i~~~ 182 (187)
T 2a9k_A 171 VFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 35
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=93.07 Aligned_cols=84 Identities=19% Similarity=0.324 Sum_probs=65.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++..+..|+..+.......++|+++|+||+|+.+ ....+++..... ..+++++++||++|.||++
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~~ 166 (206)
T 2bov_A 92 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRANVDK 166 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-----HhCCeEEEEeCCCCCCHHH
Confidence 589999999999988988887654445799999999999964 234444444332 2346799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|.+.+.+
T Consensus 167 l~~~l~~~i~~ 177 (206)
T 2bov_A 167 VFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 36
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.68 E-value=7.7e-17 Score=92.66 Aligned_cols=85 Identities=18% Similarity=0.220 Sum_probs=64.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++++++.+..|+..+.......++|+++|+||+|+... ...++...... ..+++++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-----SWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH-----HhCCcEEEEecCCCCCHHH
Confidence 5799999999999899888876544457999999999999643 34444444322 2346799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.+.
T Consensus 159 l~~~l~~~~~~~ 170 (181)
T 3t5g_A 159 VFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 37
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.68 E-value=1.5e-16 Score=91.62 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=59.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. .+.++...... ..++++++|||++|.||++
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLAL-----DYGIKFMETSAKANINVEN 160 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHH-----HHTCEEEECCC---CCHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHH
Confidence 589999999999888888876542 247899999999999753 34444443321 2346799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|.+.+.+
T Consensus 161 l~~~l~~~i~~ 171 (183)
T 2fu5_C 161 AFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988864
No 38
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.68 E-value=1e-16 Score=91.82 Aligned_cols=85 Identities=16% Similarity=0.267 Sum_probs=65.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++.....|+..++......++|+++|+||+|+.. ....++..... ...++.++++||++|.|+++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 87 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG-----ASHHVAYFEASAKLRLNVDE 161 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHHH
Confidence 579999999999888888876543345789999999999964 23334433322 12356899999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.+.
T Consensus 162 l~~~l~~~~~~~ 173 (181)
T 2fn4_A 162 AFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 39
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=3.1e-16 Score=90.89 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=65.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++++.++.....|+..+.......++|+++|+||+|+... ...++...... ..++.++++||++|.||+++
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-----KHSMLFIEASAKTCDGVQCA 168 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH-----HcCCEEEEecCCCCCCHHHH
Confidence 5899999999988889888876544457999999999999542 33444433322 23467999999999999999
Q ss_pred HHHHHHhhhhc
Q psy2977 80 LQWLIAHSKSH 90 (92)
Q Consensus 80 ~~~l~~~i~~~ 90 (92)
|++|.+.+.+.
T Consensus 169 ~~~l~~~~~~~ 179 (195)
T 1x3s_A 169 FEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHhh
Confidence 99999988653
No 40
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.66 E-value=2.9e-16 Score=92.74 Aligned_cols=84 Identities=20% Similarity=0.302 Sum_probs=64.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++.....|+..+.......++|+++|+||+|+.+. ...++..+... ..++++++|||++|.||++
T Consensus 114 V~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~~ 188 (217)
T 2f7s_A 114 MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-----KYGIPYFETSAATGQNVEK 188 (217)
T ss_dssp EEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEEEBTTTTBTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH-----HCCCcEEEEECCCCCCHHH
Confidence 5899999999988888888765543367999999999999642 33444433321 2245799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|.+.+.+
T Consensus 189 l~~~l~~~i~~ 199 (217)
T 2f7s_A 189 AVETLLDLIMK 199 (217)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 41
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=1.1e-16 Score=93.34 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=64.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCC-CHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERD-NID 77 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~-gi~ 77 (92)
|+|++++++++.+..|+..+.......++|+++|+||+|+.. ..+.++...... ..++++++|||++|. ||+
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~~gi~ 179 (196)
T 2atv_A 105 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAFYECSACTGEGNIT 179 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEEEECCTTTCTTCHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH-----HhCCeEEEECCCcCCcCHH
Confidence 589999999998888887776543335789999999999964 233444433221 224689999999999 999
Q ss_pred HHHHHHHHhhhhc
Q psy2977 78 ITLQWLIAHSKSH 90 (92)
Q Consensus 78 ~~~~~l~~~i~~~ 90 (92)
++|++|.+.+.++
T Consensus 180 ~l~~~l~~~i~~~ 192 (196)
T 2atv_A 180 EIFYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
No 42
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.66 E-value=2.3e-16 Score=91.19 Aligned_cols=84 Identities=21% Similarity=0.253 Sum_probs=64.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++..+..|+..+.......++|+++|+||+|+.+ ....+++.+... ..+++++++||++|.|+++
T Consensus 100 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 174 (195)
T 3bc1_A 100 LFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE-----KYGIPYFETSAANGTNISH 174 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCCEEEEECCCCCCHHH
Confidence 589999999998888888887654335789999999999964 334444443321 1235789999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|.+.+.+
T Consensus 175 l~~~l~~~~~~ 185 (195)
T 3bc1_A 175 AIEMLLDLIMK 185 (195)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 43
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=92.60 Aligned_cols=85 Identities=14% Similarity=0.139 Sum_probs=63.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++..+..|+..+.......++|+++|+||+|+... ....+...... ..+.+++++||++|.||++
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 176 (201)
T 3oes_A 102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE-----SWGATFMESSARENQLTQG 176 (201)
T ss_dssp EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECCTTCHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH-----HhCCeEEEEeCCCCCCHHH
Confidence 5899999999999999998887644467899999999999642 23333332221 2346799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.+.
T Consensus 177 l~~~l~~~i~~~ 188 (201)
T 3oes_A 177 IFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998654
No 44
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.66 E-value=6.6e-16 Score=88.58 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=64.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||++|.|+++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~~ 164 (181)
T 2efe_B 91 VFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQ-----ENGLFFMETSAKTATNVKE 164 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCSSSCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHH
Confidence 589999999999888988877642 257899999999999643 34444444332 2346799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.+.
T Consensus 165 l~~~l~~~~~~~ 176 (181)
T 2efe_B 165 IFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
No 45
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.66 E-value=2.6e-16 Score=88.76 Aligned_cols=84 Identities=17% Similarity=0.256 Sum_probs=63.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ...++..+... ..+++++++||++|.|++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 155 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR-----SYGIPYIETSAKTRQGVEDA 155 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEEECTTTCTTHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHH
Confidence 5799999999888888887765433347899999999999752 23333333221 12457999999999999999
Q ss_pred HHHHHHhhhh
Q psy2977 80 LQWLIAHSKS 89 (92)
Q Consensus 80 ~~~l~~~i~~ 89 (92)
|++|.+.+.+
T Consensus 156 ~~~l~~~~~~ 165 (166)
T 2ce2_X 156 FYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 46
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=1.3e-17 Score=94.65 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=63.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC-----CCHHHHHHhhccCCcCCCceEEEeeccccCCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-----LDEKELIDRMNLCAIQDREICCYSISCKERDN 75 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 75 (92)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+... ...++..... ...+++++++||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 155 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLA-----EEKGLLFFETSAKTGEN 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH-----HHHTCEEEECCTTTCTT
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 579999999999888888877643 257899999999998643 2233332221 12346899999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy2977 76 IDITLQWLIAHSKS 89 (92)
Q Consensus 76 i~~~~~~l~~~i~~ 89 (92)
++++|++|.+.+.+
T Consensus 156 i~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 156 VNDVFLGIGEKIPL 169 (170)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 47
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.66 E-value=3.5e-16 Score=90.89 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=64.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.. ....++...... ..++.++++||++|.||++
T Consensus 100 v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 173 (191)
T 2a5j_A 100 VYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGLIFMETSAKTACNVEE 173 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 589999999998888888876532 25789999999999964 234444433321 2346799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|.+.+.+
T Consensus 174 l~~~l~~~i~~ 184 (191)
T 2a5j_A 174 AFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988865
No 48
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.65 E-value=4.5e-16 Score=88.22 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=64.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+ ..+.++...... ..+++++++||++|.|+++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYAD-----DNSLLFMETSAKTSMNVNE 158 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHH
Confidence 589999999999888888877542 25789999999999864 233444443321 2356899999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|.+.+.+
T Consensus 159 l~~~i~~~~~~ 169 (170)
T 1r2q_A 159 IFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHTSCC
T ss_pred HHHHHHHHHhh
Confidence 99999998754
No 49
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=5.9e-16 Score=90.05 Aligned_cols=84 Identities=19% Similarity=0.164 Sum_probs=64.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++.....|+..+.... ..++|+++|+||+|+.+ ....+++.+... ..++++++|||++|.||++
T Consensus 102 V~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 102 VYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAE-----SIGAIVVETSAKNAINIEE 175 (192)
T ss_dssp EEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----TTTCEEEECBTTTTBSHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCcCHHH
Confidence 589999999999888888876542 35789999999999964 334455544432 2357899999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.+.
T Consensus 176 l~~~l~~~i~~~ 187 (192)
T 2fg5_A 176 LFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHHHHhh
Confidence 999999988654
No 50
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.65 E-value=3.2e-16 Score=88.95 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=63.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++++.+++....|+..+.... ..+.|+++|+||+|+... ...++..+... ..+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHH
Confidence 579999999988888888776542 247899999999999542 23333333221 12457999999999999999
Q ss_pred HHHHHHhhhhc
Q psy2977 80 LQWLIAHSKSH 90 (92)
Q Consensus 80 ~~~l~~~i~~~ 90 (92)
|++|.+.+.++
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 51
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.65 E-value=7.2e-16 Score=88.11 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=63.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++....|+..+.... ..+.|+++|+||+|+.. ....+++.+... ..+++++++||++|.||++
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 94 VYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLLFLEASAKTGENVED 167 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 589999999988888887776532 24789999999999964 234444444332 2346899999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|.+.+.+
T Consensus 168 l~~~l~~~i~~ 178 (179)
T 1z0f_A 168 AFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 52
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=5.5e-16 Score=90.06 Aligned_cols=84 Identities=13% Similarity=0.164 Sum_probs=64.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+. ...++...... ..++.++++||++|.||++
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 102 MYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAE-----QLGFDFFEASAKENISVRQ 175 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHH
Confidence 589999999998888888876532 357999999999999642 33333333221 2346799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.++
T Consensus 176 l~~~l~~~i~~~ 187 (191)
T 3dz8_A 176 AFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 53
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=6.9e-16 Score=88.43 Aligned_cols=84 Identities=17% Similarity=0.239 Sum_probs=63.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++.+..|+..+..... .+.|+++|+||+|+... ...++...... ..+++++++||++|.|+++
T Consensus 90 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 90 LYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETSAKTGLNVDL 163 (180)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHH
Confidence 5899999999888888887765422 57899999999999753 23333333221 1245799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.++
T Consensus 164 l~~~l~~~~~~~ 175 (180)
T 2g6b_A 164 AFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 54
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.64 E-value=4.9e-16 Score=89.03 Aligned_cols=86 Identities=17% Similarity=0.251 Sum_probs=64.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCC---CCCCCcEEEEeeCCCCCCC---CCHHHHHHhhccCCcCCCceEEEeeccccCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKP---QLIGIPILVLGNKRDLPNA---LDEKELIDRMNLCAIQDREICCYSISCKERD 74 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 74 (92)
|+|++++.+++....|+..+.... ...++|+++|+||+|+... ...++..+... .....+++++||++|.
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 88 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTTTTB
T ss_pred EEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecCCCC
Confidence 589999999998888887766432 2257899999999999532 23444443322 1234679999999999
Q ss_pred CHHHHHHHHHHhhhhc
Q psy2977 75 NIDITLQWLIAHSKSH 90 (92)
Q Consensus 75 gi~~~~~~l~~~i~~~ 90 (92)
||+++|++|.+.+.++
T Consensus 164 gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQ 179 (182)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988654
No 55
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.64 E-value=9.7e-16 Score=88.93 Aligned_cols=84 Identities=19% Similarity=0.220 Sum_probs=63.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++....|+..+.... ..+.|+++|+||+|+.... ...+...... ..+.+++++||++|.||++
T Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 95 VYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFAD-----SLGIPFLETSAKNATNVEQ 168 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEEECTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHH
Confidence 589999999998888888776542 2478999999999997532 3333333221 2245799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.++
T Consensus 169 l~~~l~~~i~~~ 180 (196)
T 3tkl_A 169 SFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 56
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.64 E-value=1.3e-15 Score=89.24 Aligned_cols=84 Identities=14% Similarity=0.185 Sum_probs=64.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++...... ..+++++++||++|.||++
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~~ 160 (206)
T 2bcg_Y 87 VYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSALDSTNVED 160 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHH
Confidence 589999999999888888776532 247899999999999753 33444433321 2346799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|.+|.+.+.+.
T Consensus 161 l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 161 AFLTMARQIKES 172 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 57
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.64 E-value=5.8e-16 Score=90.52 Aligned_cols=84 Identities=13% Similarity=0.185 Sum_probs=56.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCC--CCCCcEEEEeeCCCCCC---CCCHHHHHHhhccCCcCCCceEEEeecccc-CC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQ--LIGIPILVLGNKRDLPN---ALDEKELIDRMNLCAIQDREICCYSISCKE-RD 74 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~-~~ 74 (92)
|+|++++.+++....|+..+..... ..++|+++|+||+|+.. ..+.+++.+... ..+++++++||++ |.
T Consensus 103 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 103 VFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT-----TNTLDFFDVSANPPGK 177 (208)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH-----HTTCEEEECCC-----
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH-----HcCCEEEEeccCCCCc
Confidence 5899999999999899888876432 24789999999999975 234444444332 2346899999999 99
Q ss_pred CHHHHHHHHHHhhhh
Q psy2977 75 NIDITLQWLIAHSKS 89 (92)
Q Consensus 75 gi~~~~~~l~~~i~~ 89 (92)
||+++|++|.+.+.+
T Consensus 178 gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 178 DADAPFLSIATTFYR 192 (208)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998754
No 58
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.64 E-value=2.3e-16 Score=89.11 Aligned_cols=84 Identities=13% Similarity=0.199 Sum_probs=63.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++....|+..+.......+.|+++|+||+|+... ...++...... ..+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCPFMETSAKSKTMVDE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSCEEEECTTCHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-----HhCCCEEEecCCCCcCHHH
Confidence 5799999999988888888776444457999999999998642 23333333221 1245799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|.+.+.+
T Consensus 156 l~~~l~~~~~~ 166 (167)
T 1kao_A 156 LFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998864
No 59
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.64 E-value=3.5e-16 Score=88.84 Aligned_cols=83 Identities=20% Similarity=0.182 Sum_probs=63.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+ ..+.++..+... ..+.+++++||++|.|+++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 85 VYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAKHYHTSAKQNKGIEE 158 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEEBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCHHH
Confidence 579999999998888887765431 14689999999999964 234444444322 2346799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|.+.+.+
T Consensus 159 l~~~l~~~~~~ 169 (170)
T 1z08_A 159 LFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 60
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.64 E-value=9.8e-17 Score=97.48 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=59.7
Q ss_pred CeeCCch--hhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADT--DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++ .+|+.+..|+..+.......++|+++|+||+|+......++..+... ...++.+++|||++|.||++
T Consensus 169 V~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----~~~~~~~~e~SAk~g~gv~e 244 (255)
T 3c5h_A 169 GIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL----SKKNLQVVETSARSNVNVDL 244 (255)
T ss_dssp EEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHH----TSSSCCEEECBTTTTBSHHH
T ss_pred EEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHH----hcCCCeEEEEECCCCCCHHH
Confidence 5899998 89999888888876531124689999999999964222222222211 11256799999999999999
Q ss_pred HHHHHHHhhh
Q psy2977 79 TLQWLIAHSK 88 (92)
Q Consensus 79 ~~~~l~~~i~ 88 (92)
+|++|.+.+.
T Consensus 245 lf~~l~~~l~ 254 (255)
T 3c5h_A 245 AFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998775
No 61
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.64 E-value=9e-16 Score=88.84 Aligned_cols=85 Identities=16% Similarity=0.240 Sum_probs=64.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC-CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN-ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++++.++.....|+..+.......++|+++|+||+|+.. ....+++.+... ..+++++++||++|.|++++
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK-----SYGIPFIETSAKTRQGVEDA 173 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHH
Confidence 579999999988888877766533334789999999999975 234444443321 12457999999999999999
Q ss_pred HHHHHHhhhhc
Q psy2977 80 LQWLIAHSKSH 90 (92)
Q Consensus 80 ~~~l~~~i~~~ 90 (92)
|++|.+.+.+.
T Consensus 174 ~~~l~~~~~~~ 184 (190)
T 3con_A 174 FYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988664
No 62
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.63 E-value=8.9e-16 Score=87.85 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=63.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++.....|+..+... ..+.|+++|+||+|+.+. ....+...... ..+++++++||++|.|+++
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 88 VYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAG-----QMGIQLFETSAKENVNVEE 160 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHH
Confidence 58999999999988898887654 257999999999998643 23333333221 2245799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.+.
T Consensus 161 l~~~l~~~~~~~ 172 (181)
T 3tw8_B 161 MFNCITELVLRA 172 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 63
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.63 E-value=1.3e-15 Score=87.05 Aligned_cols=86 Identities=15% Similarity=0.246 Sum_probs=64.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCC---CCCCCcEEEEeeCCCCCC-CCCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKP---QLIGIPILVLGNKRDLPN-ALDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|++++.++.....|+..+.... ...+.|+++|+||+|+.. ....+++.+... ....++++++||++|.|+
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCTTH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCCCH
Confidence 579999999988888877765421 225789999999999963 334455544332 123467999999999999
Q ss_pred HHHHHHHHHhhhhc
Q psy2977 77 DITLQWLIAHSKSH 90 (92)
Q Consensus 77 ~~~~~~l~~~i~~~ 90 (92)
+++|++|.+.+.++
T Consensus 162 ~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 162 AAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 64
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=88.63 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=63.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++....|+..+... ...++|+++|+||+|+... ...++..+... ...++.+++|||++|.||++
T Consensus 105 V~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~~SA~~g~gi~~ 179 (192)
T 2il1_A 105 VYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQ----QITGMRFCEASAKDNFNVDE 179 (192)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH----TSTTCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH----hcCCCeEEEEeCCCCCCHHH
Confidence 58999999998888887766543 2247899999999999642 33444443321 11256899999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.++
T Consensus 180 l~~~l~~~i~~~ 191 (192)
T 2il1_A 180 IFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 65
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.63 E-value=1.3e-15 Score=89.93 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=63.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+... ...++..... ...++++++|||++|.|+++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~~ 164 (218)
T 4djt_A 91 FFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVL-----KGKNYEYFEISAKTAHNFGL 164 (218)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHT-----TTCCCEEEEEBTTTTBTTTH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCcEEEEecCCCCCHHH
Confidence 589999999988888887776532 235899999999999753 2333333332 23457899999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.+.
T Consensus 165 l~~~l~~~~~~~ 176 (218)
T 4djt_A 165 PFLHLARIFTGR 176 (218)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhcc
Confidence 999999998754
No 66
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=88.56 Aligned_cols=84 Identities=15% Similarity=0.248 Sum_probs=64.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+... ...++...... ..++.++++||++|.||++
T Consensus 104 v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 104 VFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAE-----NNGLLFLETSALDSTNVEL 177 (193)
T ss_dssp EEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 589999999988888888887542 357899999999999642 33444443321 2346899999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.++
T Consensus 178 l~~~l~~~i~~~ 189 (193)
T 2oil_A 178 AFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 67
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.63 E-value=1.3e-15 Score=89.04 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=63.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++....|+..+.... ..+.|+++|+||+|+... ...++...... ..+++++++||++|.||++
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 160 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLAD-----HLGFEFFEASAKDNINVKQ 160 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSSHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHH-----HCCCeEEEEECCCCCCHHH
Confidence 589999999998888888876532 357899999999999753 23333333221 1245799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|.+.+.+
T Consensus 161 l~~~l~~~i~~ 171 (203)
T 1zbd_A 161 TFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 68
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.63 E-value=1e-15 Score=88.67 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=63.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++....|+..+.... ..+.|+++|+||+|+... ...++..+... ..+++++++||++|.|+++
T Consensus 101 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLAD-----DLGFEFFEASAKENINVKQ 174 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHH-----HcCCeEEEEECCCCCCHHH
Confidence 589999999998888888776532 357899999999999642 23334333221 1246799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.++
T Consensus 175 l~~~l~~~i~~~ 186 (189)
T 2gf9_A 175 VFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 69
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.63 E-value=1e-15 Score=88.15 Aligned_cols=83 Identities=18% Similarity=0.149 Sum_probs=63.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. ..+..+...... ..+++++++||++|.|+++
T Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 89 VYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQ-----ENELMFLETSALTGENVEE 162 (186)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEecCCCCCCHHH
Confidence 589999999998888887765532 25789999999999963 234444433321 2356899999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|.+.+.+
T Consensus 163 l~~~l~~~~~~ 173 (186)
T 2bme_A 163 AFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 70
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=89.51 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=63.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++....|+..+..... .+.|+++|+||+|+.. ..+..+...... ..++.+++|||++|.||++
T Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 104 VYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQ-----ENELMFLETSALTGENVEE 177 (200)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 5899999999988888888765322 5789999999999963 233444433321 2356899999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|.+.+.+
T Consensus 178 l~~~l~~~i~~ 188 (200)
T 2o52_A 178 AFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 71
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.62 E-value=1.9e-15 Score=85.75 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=63.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.++.....|+..+... .....|+++|+||+|+.+. ...++...... ..+++++++||++|.|+++
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYAD-----SIHAIFVETSAKNAININE 158 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCcCHHH
Confidence 57999999999888888877653 2357899999999999642 23333333221 2346899999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|.+.+.+
T Consensus 159 l~~~i~~~i~~ 169 (170)
T 1z0j_A 159 LFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHHHhc
Confidence 99999988753
No 72
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=6.7e-16 Score=90.83 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=62.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.. ....++...... ..++++++|||++|.||++
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 105 TYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMYYLETSAKESDNVEK 178 (201)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCCEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 589999999998888888776532 24689999999999963 233444433221 2246799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|.+.+.+
T Consensus 179 l~~~l~~~i~~ 189 (201)
T 2ew1_A 179 LFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988854
No 73
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.62 E-value=4.1e-16 Score=88.33 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=63.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++....|+..+.... .+.|+++|+||+|+.+ ....+++..... ..+++++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 156 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLRFYRTSVKEDLNVSE 156 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSSHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEecCCCCCHHH
Confidence 579999999988888888776542 4689999999999864 233444443321 2346899999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|.+.+.+
T Consensus 157 l~~~l~~~~~~ 167 (168)
T 1z2a_A 157 VFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 74
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.62 E-value=7.9e-16 Score=89.17 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=60.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccC---CC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKER---DN 75 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~---~g 75 (92)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ...++...... ..++.++++||++| .|
T Consensus 100 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~~~~ 174 (189)
T 1z06_A 100 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-----THSMPLFETSAKNPNDNDH 174 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEECCSSSGGGGSC
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH-----HcCCEEEEEeCCcCCcccC
Confidence 5899999999998889888876543457999999999999642 33343333221 23457999999999 99
Q ss_pred HHHHHHHHHHhhhh
Q psy2977 76 IDITLQWLIAHSKS 89 (92)
Q Consensus 76 i~~~~~~l~~~i~~ 89 (92)
|+++|++|.+.+.+
T Consensus 175 i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 175 VEAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 75
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.62 E-value=9.3e-16 Score=89.19 Aligned_cols=84 Identities=10% Similarity=0.027 Sum_probs=61.5
Q ss_pred CeeCCchhhHHHH-HHHHHHhhcCCCCCCCcEEEEeeCCCCCCC----CCHHHHHHhhccCCcCCCceE-EEeeccccCC
Q psy2977 1 MVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKRDLPNA----LDEKELIDRMNLCAIQDREIC-CYSISCKERD 74 (92)
Q Consensus 1 v~D~s~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~SA~~~~ 74 (92)
|+|++++.++..+ ..|+..+... ..+.|+++|+||+|+... ...++..+... ..++. ++++||++|.
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 173 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ-----KLGCVAYIEASSVAKI 173 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH-----HHTCSCEEECBTTTTB
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHH-----hcCCCEEEEeecCCCC
Confidence 5899999999887 4566655433 357999999999999642 33444433321 12334 8999999999
Q ss_pred CHHHHHHHHHHhhhhcC
Q psy2977 75 NIDITLQWLIAHSKSHT 91 (92)
Q Consensus 75 gi~~~~~~l~~~i~~~~ 91 (92)
||+++|++|.+.+.+++
T Consensus 174 gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 174 GLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp SHHHHHHHHHHHHHCSC
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 99999999999987653
No 76
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.62 E-value=7e-16 Score=90.16 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=60.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--------CCCHHHHHHhhccCCcCCCceEEEeecccc
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--------ALDEKELIDRMNLCAIQDREICCYSISCKE 72 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 72 (92)
|+|++++.++.....|+..+.... ..++|+++|+||+|+.+ ....++..... ...+++++++||++
T Consensus 107 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~SA~~ 180 (199)
T 2p5s_A 107 LYDVTCEKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLA-----MTYGALFCETSAKD 180 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHH-----HHHTCEEEECCTTT
T ss_pred EEECCChHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHHHHH-----HHcCCeEEEeeCCC
Confidence 589999999998888887765432 24689999999999852 22233322221 12346799999999
Q ss_pred CCCHHHHHHHHHHhhhhc
Q psy2977 73 RDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 73 ~~gi~~~~~~l~~~i~~~ 90 (92)
|.||+++|++|.+.+.++
T Consensus 181 g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 181 GSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp CTTHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999988654
No 77
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.62 E-value=3.4e-16 Score=92.78 Aligned_cols=83 Identities=23% Similarity=0.300 Sum_probs=63.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.++.....|+..+.... .++|+++|+||+|+.+.....+.... ....++.+++|||++|.||+++|
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~ 166 (221)
T 3gj0_A 94 MFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVF-----HRKKNLQYYDISAKSNYNFEKPF 166 (221)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGCCH-----HHHHTCEEEECBGGGTBTTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHHHH-----HHHcCCEEEEEeCCCCCCHHHHH
Confidence 589999999999888988887642 47899999999999754322111111 11235689999999999999999
Q ss_pred HHHHHhhhhc
Q psy2977 81 QWLIAHSKSH 90 (92)
Q Consensus 81 ~~l~~~i~~~ 90 (92)
++|.+.+...
T Consensus 167 ~~l~~~l~~~ 176 (221)
T 3gj0_A 167 LWLARKLIGD 176 (221)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhC
Confidence 9999988654
No 78
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.62 E-value=3.4e-15 Score=86.67 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=63.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC-CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN-ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++++.++.....|+..+.... +.|+++|+||+|+.. ....+++.+.+. ..+++++++||++|.|++++
T Consensus 123 v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l 194 (208)
T 3clv_A 123 VFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNKFQVDILEVQKYAQ-----DNNLLFIQTSAKTGTNIKNI 194 (208)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-CCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCcccccCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHH
Confidence 589999999998888888887542 389999999999432 334555555432 23568999999999999999
Q ss_pred HHHHHHhhhhc
Q psy2977 80 LQWLIAHSKSH 90 (92)
Q Consensus 80 ~~~l~~~i~~~ 90 (92)
|++|.+.+.++
T Consensus 195 ~~~l~~~~~~~ 205 (208)
T 3clv_A 195 FYMLAEEIYKN 205 (208)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 79
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=1.7e-15 Score=88.03 Aligned_cols=81 Identities=12% Similarity=0.177 Sum_probs=59.4
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHHhhccCCcCCCce-E
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNA--------------LDEKELIDRMNLCAIQDREI-C 64 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~-~ 64 (92)
|+|+++++++.... .|+..+... ..++|+++|+||+|+.+. .+.++..+... ..+. +
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~ 168 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAK-----EIGACC 168 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHH-----HHTCSC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHH-----HcCCcE
Confidence 58999999999887 677776653 247899999999999753 22222222111 1122 6
Q ss_pred EEeeccccCCCHHHHHHHHHHhhh
Q psy2977 65 CYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 65 ~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
+++|||++|.||+++|++|.+.+.
T Consensus 169 ~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 169 YVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999998875
No 80
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.3e-15 Score=90.44 Aligned_cols=84 Identities=20% Similarity=0.253 Sum_probs=61.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.. ....++...... ..+++++++||++|.||++
T Consensus 92 V~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 165 (223)
T 3cpj_B 92 VYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ-----ENQLLFTETSALNSENVDK 165 (223)
T ss_dssp EEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCCC-CCCHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 589999999999888888876542 24789999999999964 234444443321 2346899999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.++
T Consensus 166 l~~~l~~~i~~~ 177 (223)
T 3cpj_B 166 AFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 81
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.61 E-value=3.7e-16 Score=90.68 Aligned_cols=84 Identities=15% Similarity=0.248 Sum_probs=63.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCC--CCCCCcEEEEeeCCCCCC--CCCHHHHHHhhccCCcCCCceEEEeecc-ccCCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKP--QLIGIPILVLGNKRDLPN--ALDEKELIDRMNLCAIQDREICCYSISC-KERDN 75 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~--~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA-~~~~g 75 (92)
|+|++++++++.+..|+..+.... ...+.|+++|+||+|+.. ..+.++..+... ..++.+++||| ++|.|
T Consensus 98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~g~g 172 (187)
T 3c5c_A 98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG-----RFGCLFFEVSACLDFEH 172 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECCSSSCSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH-----HcCCcEEEEeecCcccc
Confidence 589999999999988888876531 114689999999999964 234444433321 22467999999 89999
Q ss_pred HHHHHHHHHHhhhh
Q psy2977 76 IDITLQWLIAHSKS 89 (92)
Q Consensus 76 i~~~~~~l~~~i~~ 89 (92)
|+++|++|.+.+.+
T Consensus 173 v~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 173 VQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998864
No 82
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.60 E-value=7.2e-16 Score=91.29 Aligned_cols=83 Identities=10% Similarity=0.085 Sum_probs=62.1
Q ss_pred CeeCCchhhHHH-HHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHHhhccCCcCCCce-E
Q psy2977 1 MVDAADTDKLEA-SRNELHALIEKPQLIGIPILVLGNKRDLPNA--------------LDEKELIDRMNLCAIQDREI-C 64 (92)
Q Consensus 1 v~D~s~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~-~ 64 (92)
|||+++++++.. ...|+..+... ..+.|+++|+||+|+... ...++...... ..++ .
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~ 177 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK-----QLGAEI 177 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH-----HHTCSE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH-----HcCCCE
Confidence 689999999998 56787777654 257999999999999642 33333333221 2245 7
Q ss_pred EEeeccccCCC-HHHHHHHHHHhhhhc
Q psy2977 65 CYSISCKERDN-IDITLQWLIAHSKSH 90 (92)
Q Consensus 65 ~~~~SA~~~~g-i~~~~~~l~~~i~~~ 90 (92)
+++|||++|.| |+++|++|.+.+.+.
T Consensus 178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 178 YLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred EEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 99999999998 999999999988654
No 83
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.60 E-value=1.2e-15 Score=87.14 Aligned_cols=84 Identities=15% Similarity=0.220 Sum_probs=62.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|+++
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-----ELNVMFIETSAKAGYNVKQ 166 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEEEBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHH
Confidence 579999999998888888876532 246899999999999642 23344333221 2346899999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.++
T Consensus 167 l~~~l~~~~~~~ 178 (179)
T 2y8e_A 167 LFRRVAAALPGM 178 (179)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHHHhhc
Confidence 999999988653
No 84
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.60 E-value=1.9e-15 Score=88.40 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=63.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCC---CCCCCcEEEEeeCCCCCCC-CCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKP---QLIGIPILVLGNKRDLPNA-LDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|++++.++.....|+..+.... ...+.|+++|+||+|+... ...++...... ....++++++||++|.|+
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTBSH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCCCH
Confidence 589999999988888877765431 1246899999999999742 23444443321 123567999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy2977 77 DITLQWLIAHSKS 89 (92)
Q Consensus 77 ~~~~~~l~~~i~~ 89 (92)
+++|++|.+.+.+
T Consensus 163 ~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 163 EQAFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
No 85
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.59 E-value=1.5e-15 Score=86.94 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=61.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCC-CCCCc-EEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQ-LIGIP-ILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~-~~~~p-~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|++++.+++....|+..+..... ....| +++|+||+|+.+. .+.++...... ..+++++++||++|.||
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 160 (178)
T 2hxs_A 86 VYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-----ENGFSSHFVSAKTGDSV 160 (178)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEEECTTTCTTH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-----HcCCcEEEEeCCCCCCH
Confidence 5899999999888888777654210 11345 8999999999642 33444433321 22467999999999999
Q ss_pred HHHHHHHHHhhhhcC
Q psy2977 77 DITLQWLIAHSKSHT 91 (92)
Q Consensus 77 ~~~~~~l~~~i~~~~ 91 (92)
+++|++|.+.+.+..
T Consensus 161 ~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 161 FLCFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999887643
No 86
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.59 E-value=8.6e-17 Score=94.06 Aligned_cols=85 Identities=19% Similarity=0.211 Sum_probs=57.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+.. ..++..... ...+++++++||++|.||++
T Consensus 112 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 112 VYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFA-----DSLGIPFLETSAKNATNVEQ 185 (199)
T ss_dssp CC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHH-----HTTTCCBCCCCC---HHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence 689999999999988888886542 2579999999999996432 111111111 12345689999999999999
Q ss_pred HHHHHHHhhhhcC
Q psy2977 79 TLQWLIAHSKSHT 91 (92)
Q Consensus 79 ~~~~l~~~i~~~~ 91 (92)
+|++|.+.+.++.
T Consensus 186 l~~~l~~~l~~~~ 198 (199)
T 3l0i_B 186 SFMTMAAEIKKRM 198 (199)
T ss_dssp HHHHHTTTTTTTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987653
No 87
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.59 E-value=2e-15 Score=88.69 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=62.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++++.+++....|+..+.... ..+.|+++|+||+|+... ...++...... ..+++++++||++|.||+++
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 172 (213)
T 3cph_A 99 VYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNVNEI 172 (213)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHH
Confidence 589999999988888888776542 246899999999999532 23333333221 12357999999999999999
Q ss_pred HHHHHHhhhh
Q psy2977 80 LQWLIAHSKS 89 (92)
Q Consensus 80 ~~~l~~~i~~ 89 (92)
|++|.+.+.+
T Consensus 173 ~~~l~~~~~~ 182 (213)
T 3cph_A 173 FFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 88
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.59 E-value=3.5e-15 Score=88.20 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=60.5
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHHhhccCCcCCCc-eE
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNAL--------------DEKELIDRMNLCAIQDRE-IC 64 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~-~~ 64 (92)
|+|++++.++..+. .|+..+... ..++|+++|+||+|+.... +.++..+... ..+ ..
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~ 184 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMAR-----SVGAVA 184 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHH-----HTTCSE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHH-----hcCCCE
Confidence 58999999999886 577666543 2478999999999996532 1122222111 123 37
Q ss_pred EEeeccccCCCHHHHHHHHHHhhhhcC
Q psy2977 65 CYSISCKERDNIDITLQWLIAHSKSHT 91 (92)
Q Consensus 65 ~~~~SA~~~~gi~~~~~~l~~~i~~~~ 91 (92)
+++|||++|.||+++|++|.+.+.+.+
T Consensus 185 ~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 185 YLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999987643
No 89
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=1.5e-15 Score=88.25 Aligned_cols=85 Identities=19% Similarity=0.255 Sum_probs=61.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCC-CCCCCcEEEEeeCCCCCCC-CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKP-QLIGIPILVLGNKRDLPNA-LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++.+++....|+..+.... ...+.|+++|+||+|+... ...++..... ...++.++++||++|.||++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA-----QEWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH-----HHhCCeEEEEecCCCCCHHH
Confidence 579999999888777765554321 1246899999999999753 2333333321 12246799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.++
T Consensus 161 l~~~l~~~~~~~ 172 (199)
T 2gf0_A 161 LFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHCSSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987653
No 90
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=2.6e-15 Score=85.20 Aligned_cols=85 Identities=20% Similarity=0.235 Sum_probs=60.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcC-CCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEK-PQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNID 77 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 77 (92)
|+|++++.+++....|+..+... ....+.|+++|+||+|+.+. ....+..... ...+++++++||++|.|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 155 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA-----RTWKCAFMETSAKLNHNVK 155 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEecCCCCcCHH
Confidence 57999999998877777665542 12347899999999998642 2333332221 1224679999999999999
Q ss_pred HHHHHHHHhhhhc
Q psy2977 78 ITLQWLIAHSKSH 90 (92)
Q Consensus 78 ~~~~~l~~~i~~~ 90 (92)
++|++|.+.+.++
T Consensus 156 ~l~~~l~~~~~~~ 168 (172)
T 2erx_A 156 ELFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHHTCCSS
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988654
No 91
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.58 E-value=2.8e-15 Score=87.49 Aligned_cols=83 Identities=11% Similarity=0.111 Sum_probs=60.6
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHHhhccCCcCCCc-eE
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNA--------------LDEKELIDRMNLCAIQDRE-IC 64 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~~ 64 (92)
|+|++++.++.... .|+..+... ..+.|+++|+||+|+... ...++...... ..+ ++
T Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~ 170 (201)
T 2q3h_A 98 CFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAE-----EIKAAS 170 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH-----HHTCSE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHH-----hcCCcE
Confidence 58999999999886 677776653 247899999999999642 12222222211 112 37
Q ss_pred EEeeccccCCCHHHHHHHHHHhhhhc
Q psy2977 65 CYSISCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 65 ~~~~SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
+++|||++|.||+++|++|.+.+.+.
T Consensus 171 ~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 171 YIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999988643
No 92
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.57 E-value=2.9e-15 Score=88.03 Aligned_cols=81 Identities=14% Similarity=0.129 Sum_probs=57.6
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCCC--------------HHHHHHhhccCCcCCCceEE
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNALD--------------EKELIDRMNLCAIQDREICC 65 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 65 (92)
|+|++++.++.... .|+..+.... .++|+++|+||+|+..... .++...... .....++
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~ 181 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK----EIGAVKY 181 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH----HTTCSEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHH----hcCCcEE
Confidence 58999999999886 5666665432 5789999999999965321 111111110 0112469
Q ss_pred EeeccccCCCHHHHHHHHHHhh
Q psy2977 66 YSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 66 ~~~SA~~~~gi~~~~~~l~~~i 87 (92)
++|||++|.||+++|++|.+.+
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 182 LECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EECCTTTCTTHHHHHHHHHHTT
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999865
No 93
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.56 E-value=4.8e-15 Score=85.19 Aligned_cols=83 Identities=12% Similarity=0.108 Sum_probs=59.6
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHHhhccCCcCCCc-eE
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNAL--------------DEKELIDRMNLCAIQDRE-IC 64 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~-~~ 64 (92)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.. +.++..... ...+ ++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~ 155 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA-----KEIGAVK 155 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH-----HHTTCSE
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHH-----HhcCCcE
Confidence 58999999998886 5766665432 378999999999986431 111211111 1123 37
Q ss_pred EEeeccccCCCHHHHHHHHHHhhhhc
Q psy2977 65 CYSISCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 65 ~~~~SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
+++|||++|.|++++|++|.+.+.+.
T Consensus 156 ~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 156 YLECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred EEEecCCCccCHHHHHHHHHHHHhcc
Confidence 99999999999999999999988653
No 94
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.56 E-value=1.4e-14 Score=84.74 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=57.7
Q ss_pred CeeCCchhhHHHH-HHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHHhhccCCcCCCce-E
Q psy2977 1 MVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKRDLPNAL--------------DEKELIDRMNLCAIQDREI-C 64 (92)
Q Consensus 1 v~D~s~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~-~ 64 (92)
|+|+++++++... ..|+..+... ..+.|+++|+||+|+.... ..++...... ..+. .
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~ 175 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMAN-----RISAFG 175 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHH-----HTTCSE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHH-----hCCCcE
Confidence 5799999999888 4566555442 2478999999999997531 1112111111 1123 7
Q ss_pred EEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 65 CYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 65 ~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
+++|||++|.||+++|++|.+.+.+
T Consensus 176 ~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 176 YLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999987653
No 95
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.56 E-value=2.7e-15 Score=88.27 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=60.4
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCC----------CHHHHHHhhccCCcCCCc-eEEEee
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNAL----------DEKELIDRMNLCAIQDRE-ICCYSI 68 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~ 68 (92)
|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+.. +.++..+... ..+ .++++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~ 159 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK-----QIGAAAYIEC 159 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH-----HHTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH-----HcCCceEEEc
Confidence 58999999999886 6777765432 478999999999986431 2222222211 112 479999
Q ss_pred ccccCCCHHHHHHHHHHhhhh
Q psy2977 69 SCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 69 SA~~~~gi~~~~~~l~~~i~~ 89 (92)
||++|.||+++|++|.+.+.+
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999998864
No 96
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=1.4e-14 Score=85.14 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=58.4
Q ss_pred CeeCCchhhHHHH-HHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCc---------CCCc-eEEEeec
Q psy2977 1 MVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAI---------QDRE-ICCYSIS 69 (92)
Q Consensus 1 v~D~s~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~S 69 (92)
|+|++++.++... ..|+..+... ..++|+++|+||+|+.......+....+..... ...+ ..+++||
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 5799999999888 4566655442 247899999999999643111111110000000 0112 3799999
Q ss_pred cccCCCHHHHHHHHHHhhhhc
Q psy2977 70 CKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 70 A~~~~gi~~~~~~l~~~i~~~ 90 (92)
|++|.||+++|++|.+.+.+.
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987643
No 97
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.55 E-value=5e-14 Score=82.95 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=55.2
Q ss_pred CeeCCchh-hHHHHHHHHHHhhcC--CCCCCCcEEEEeeCCCCCCCCCHHHHHHhhc-----------------------
Q psy2977 1 MVDAADTD-KLEASRNELHALIEK--PQLIGIPILVLGNKRDLPNALDEKELIDRMN----------------------- 54 (92)
Q Consensus 1 v~D~s~~~-~~~~~~~~~~~~~~~--~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~----------------------- 54 (92)
|+|+++.. ++.....++..++.. ....++|+++|+||+|+......+++.+.+.
T Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~ 164 (214)
T 2fh5_B 85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA 164 (214)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------
T ss_pred EEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccc
Confidence 57888854 455665666555432 1224689999999999986555443322211
Q ss_pred cCCcC---------C--CceEEEeeccccC------CCHHHHHHHHHHhh
Q psy2977 55 LCAIQ---------D--REICCYSISCKER------DNIDITLQWLIAHS 87 (92)
Q Consensus 55 ~~~~~---------~--~~~~~~~~SA~~~------~gi~~~~~~l~~~i 87 (92)
..... . ....+++|||++| .||+++|+||.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 165 PAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred cccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 00000 1 1678999999999 99999999998753
No 98
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.55 E-value=4.4e-15 Score=85.78 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=59.6
Q ss_pred CeeCCchhhHHHH-HHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHHhhccCCcCCCceEE
Q psy2977 1 MVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKRDLPNA--------------LDEKELIDRMNLCAIQDREICC 65 (92)
Q Consensus 1 v~D~s~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 65 (92)
|+|++++.+++.+ ..|+..+... ..+.|+++|+||+|+.+. .+.++..+.... ....++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~ 158 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ----IGAATY 158 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTCSEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH----cCCcEE
Confidence 5899999999888 5676666543 247899999999999632 233333322110 012579
Q ss_pred Eeeccc-cCCCHHHHHHHHHHhhhh
Q psy2977 66 YSISCK-ERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 66 ~~~SA~-~~~gi~~~~~~l~~~i~~ 89 (92)
++|||+ +|.||+++|+++.+.+.+
T Consensus 159 ~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 159 IECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEeeecCCCcCHHHHHHHHHHHHhc
Confidence 999999 699999999999998764
No 99
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.54 E-value=4.1e-15 Score=85.31 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=58.6
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCC------------CHHHHHHhhccCCcCCCc-eEEE
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNAL------------DEKELIDRMNLCAIQDRE-ICCY 66 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 66 (92)
|+|++++.+++... .|+..+.... .+.|+++|+||+|+.+.. ..++..+... ..+ .+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~ 158 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKK-----LIGAPAYI 158 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHH-----HHTCSEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHH-----HcCCCEEE
Confidence 58999999998886 5776665432 378999999999986431 2222222111 123 3799
Q ss_pred eeccccCCCHHHHHHHHHHhhh
Q psy2977 67 SISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 67 ~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
+|||++|.||+++|++|.+.+.
T Consensus 159 ~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 159 ECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998774
No 100
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.52 E-value=1e-14 Score=85.90 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=59.6
Q ss_pred CeeCCchhhHHHH-HHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHHhhccCCcCCCceEE
Q psy2977 1 MVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKRDLPNA--------------LDEKELIDRMNLCAIQDREICC 65 (92)
Q Consensus 1 v~D~s~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 65 (92)
|+|++++.++..+ ..|+..+... ..+.|+++|+||+|+.+. .+.++..+.... .....+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~ 179 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ----IGAATY 179 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTCSEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH----cCCCEE
Confidence 5899999999988 5677666543 247899999999999632 233333222110 012579
Q ss_pred Eeeccc-cCCCHHHHHHHHHHhhhh
Q psy2977 66 YSISCK-ERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 66 ~~~SA~-~~~gi~~~~~~l~~~i~~ 89 (92)
++|||+ +|.||+++|++|.+.+.+
T Consensus 180 ~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 180 IECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHHHHhh
Confidence 999999 689999999999988764
No 101
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.51 E-value=1.3e-14 Score=86.55 Aligned_cols=84 Identities=14% Similarity=0.008 Sum_probs=55.5
Q ss_pred CeeCCchhhHH--HHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHH---HHHHhhccCCcCCCceEEEeeccccC
Q psy2977 1 MVDAADTDKLE--ASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEK---ELIDRMNLCAIQDREICCYSISCKER 73 (92)
Q Consensus 1 v~D~s~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~SA~~~ 73 (92)
|+|++++.++. ....|+..+... ..++|+++|+||+|+.+.. ... ....... .....+.+++|||++|
T Consensus 115 v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~SA~~g 189 (228)
T 2qu8_A 115 IIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILD---NVKNPIKFSSFSTLTG 189 (228)
T ss_dssp EEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHH---HCCSCEEEEECCTTTC
T ss_pred EEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHH---hcCCCceEEEEecccC
Confidence 57998877654 233566665433 2478999999999997532 222 1111111 0111278999999999
Q ss_pred CCHHHHHHHHHHhhhh
Q psy2977 74 DNIDITLQWLIAHSKS 89 (92)
Q Consensus 74 ~gi~~~~~~l~~~i~~ 89 (92)
.||+++|++|.+.+.+
T Consensus 190 ~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 190 VGVEQAKITACELLKN 205 (228)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998864
No 102
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.51 E-value=2.2e-14 Score=82.99 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=42.9
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
+.|+++|+||+|+.+........+...........++++++||++|.||+++|+||.+.+.+
T Consensus 133 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 133 NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 58999999999997543333222221100001134679999999999999999999998865
No 103
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.51 E-value=9.5e-15 Score=85.23 Aligned_cols=84 Identities=13% Similarity=0.132 Sum_probs=57.4
Q ss_pred CeeCCch--hhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC----CHHHHH----HhhccCCcCCCceEEEeecc
Q psy2977 1 MVDAADT--DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL----DEKELI----DRMNLCAIQDREICCYSISC 70 (92)
Q Consensus 1 v~D~s~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~SA 70 (92)
|+|++++ +++.....|+.++... ..+.|+++|+||+|+.+.. ...++. +.+........++.+++|||
T Consensus 102 v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa 179 (196)
T 3llu_A 102 VIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSI 179 (196)
T ss_dssp EEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECT
T ss_pred EEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEe
Confidence 5799986 6677777777776432 2479999999999986421 011121 11111111145678999999
Q ss_pred ccCCCHHHHHHHHHHhh
Q psy2977 71 KERDNIDITLQWLIAHS 87 (92)
Q Consensus 71 ~~~~gi~~~~~~l~~~i 87 (92)
++ .||+++|++|++.+
T Consensus 180 ~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 180 YD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TS-THHHHHHHHHHHHT
T ss_pred ch-hhHHHHHHHHHHHh
Confidence 99 99999999999875
No 104
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.51 E-value=1.4e-14 Score=91.72 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=67.6
Q ss_pred CeeCCc----------hhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC-----------------CCCHHHHHHhh
Q psy2977 1 MVDAAD----------TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN-----------------ALDEKELIDRM 53 (92)
Q Consensus 1 v~D~s~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-----------------~~~~~~~~~~~ 53 (92)
|+|+++ .+++.++..|+..+..+....+.|++|++||+|+.. ..+.++..+.+
T Consensus 223 V~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~ 302 (353)
T 1cip_A 223 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI 302 (353)
T ss_dssp EEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHH
T ss_pred EEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHH
Confidence 578888 578999999999998765556899999999999841 23444444433
Q ss_pred c-----cCCc-CCCceEEEeeccccCCCHHHHHHHHHHhhhhc
Q psy2977 54 N-----LCAI-QDREICCYSISCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 54 ~-----~~~~-~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
. +... ..+++.+++|||++|.||+++|.++.+.+.++
T Consensus 303 ~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 303 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 2 1110 13568899999999999999999999988653
No 105
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.50 E-value=1.7e-14 Score=91.68 Aligned_cols=89 Identities=16% Similarity=0.210 Sum_probs=66.3
Q ss_pred CeeCCc----------hhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC-----------------C-CCHHHHHHh
Q psy2977 1 MVDAAD----------TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN-----------------A-LDEKELIDR 52 (92)
Q Consensus 1 v~D~s~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-----------------~-~~~~~~~~~ 52 (92)
|+|+++ .+++.++..|+..+.++....+.|++|++||+|+.. . .+.++....
T Consensus 231 v~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~ 310 (362)
T 1zcb_A 231 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF 310 (362)
T ss_dssp EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred EEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHH
Confidence 578888 789999999999998765456899999999999852 1 344554443
Q ss_pred h-----ccCCcC-CCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 53 M-----NLCAIQ-DREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 53 ~-----~~~~~~-~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
+ .+.... .+++.+++|||++|+||+++|.++.+.+.+
T Consensus 311 ~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 311 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 2 222111 346789999999999999999999998864
No 106
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.49 E-value=1.6e-14 Score=83.53 Aligned_cols=84 Identities=13% Similarity=0.238 Sum_probs=59.1
Q ss_pred CeeCCch-hhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHH----HHHHhhccCCcCCCce----EEEeeccc
Q psy2977 1 MVDAADT-DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK----ELIDRMNLCAIQDREI----CCYSISCK 71 (92)
Q Consensus 1 v~D~s~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~SA~ 71 (92)
|+|++++ .++.....|+.++.... .+.|+++|+||+|+....... +..+.+. ...++ .++++||+
T Consensus 86 v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 86 VYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELL----NKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTT----TCTTSCEEEEEEECCTT
T ss_pred EEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHH----HhcCCcchhheEEEecc
Confidence 5799887 47888888988876532 468999999999997432211 1112221 11223 48999999
Q ss_pred cCC-CHHHHHHHHHHhhhhc
Q psy2977 72 ERD-NIDITLQWLIAHSKSH 90 (92)
Q Consensus 72 ~~~-gi~~~~~~l~~~i~~~ 90 (92)
+|. |++++++.|.+.+.+.
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNF 179 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC
T ss_pred cCchhHHHHHHHHHHHHhcc
Confidence 997 9999999999888653
No 107
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.49 E-value=6.9e-14 Score=81.08 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=53.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHH----HHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK----ELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|++++.++... ++...+.. .+.|+++|+||+|+.+..... ++.+.++ .....+++++||++|.|+
T Consensus 112 v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv 182 (195)
T 1svi_A 112 IVDLRHAPSNDDV--QMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN----IDPEDELILFSSETKKGK 182 (195)
T ss_dssp EEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT----CCTTSEEEECCTTTCTTH
T ss_pred EEECCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHc----ccCCCceEEEEccCCCCH
Confidence 4788876665543 12222222 368999999999997543332 2333232 123578999999999999
Q ss_pred HHHHHHHHHhhh
Q psy2977 77 DITLQWLIAHSK 88 (92)
Q Consensus 77 ~~~~~~l~~~i~ 88 (92)
+++|++|.+.+.
T Consensus 183 ~~l~~~l~~~l~ 194 (195)
T 1svi_A 183 DEAWGAIKKMIN 194 (195)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999998875
No 108
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.48 E-value=1.1e-14 Score=84.07 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=55.5
Q ss_pred CeeCCchhhHHHH-HHHHHH--------hhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeec
Q psy2977 1 MVDAADTDKLEAS-RNELHA--------LIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSIS 69 (92)
Q Consensus 1 v~D~s~~~~~~~~-~~~~~~--------~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S 69 (92)
|+|+.|..++... ..|... +.......++|+++|+||+|+.... ..+++...++.. .......+++||
T Consensus 86 v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~S 164 (190)
T 2cxx_A 86 AVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-LSEIDKVFIPIS 164 (190)
T ss_dssp EEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-GGGHHHHEEECC
T ss_pred EEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhh-hhccCCcEEEEe
Confidence 3566777777665 334321 1111111468999999999997543 122333333321 001123589999
Q ss_pred cccCCCHHHHHHHHHHhhhhcC
Q psy2977 70 CKERDNIDITLQWLIAHSKSHT 91 (92)
Q Consensus 70 A~~~~gi~~~~~~l~~~i~~~~ 91 (92)
|++|.||+++|++|.+.+.+..
T Consensus 165 a~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 165 AKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp TTTCTTHHHHHHHHHHHHHHC-
T ss_pred cCCCCCHHHHHHHHHHhcchhh
Confidence 9999999999999999987643
No 109
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.20 E-value=4.1e-15 Score=87.13 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=56.2
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHH---------HHHHhhccCCcCCCce-EEEeec
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNALDEK---------ELIDRMNLCAIQDREI-CCYSIS 69 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~S 69 (92)
|+|++++.++.... .|+..+... ..++|+++|+||+|+.+..... .+............+. ++++||
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 67999999998876 566555432 2378999999999996432110 0100000000112233 789999
Q ss_pred cccCCCHHHHHHHHHHhh
Q psy2977 70 CKERDNIDITLQWLIAHS 87 (92)
Q Consensus 70 A~~~~gi~~~~~~l~~~i 87 (92)
|++|.||+++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998764
No 110
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.46 E-value=6.5e-14 Score=86.95 Aligned_cols=82 Identities=11% Similarity=0.116 Sum_probs=58.9
Q ss_pred CeeCCchhhHHHHH-HHHHHhhcCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHHhhccCCcCCCc-eE
Q psy2977 1 MVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLPNA--------------LDEKELIDRMNLCAIQDRE-IC 64 (92)
Q Consensus 1 v~D~s~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~~ 64 (92)
|+|++++.++.... .|+..+.... .++|+++|+||+|+... .+.++...... ..+ .+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~ 305 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK-----EIGAVK 305 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH-----HTTCSE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHH-----HcCCcE
Confidence 58999999998886 5666665432 37899999999998642 11222222111 123 37
Q ss_pred EEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 65 CYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 65 ~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
+++|||++|.||+++|++|.+.+..
T Consensus 306 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 306 YLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEecCCCCcCHHHHHHHHHHHHhc
Confidence 9999999999999999999988764
No 111
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.46 E-value=5e-14 Score=87.48 Aligned_cols=79 Identities=14% Similarity=0.048 Sum_probs=55.4
Q ss_pred CeeCCchh-hHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++++. +++....|+..+.. .++|+++|+||+||.+....++..+..... ... +.+++|||++|.||+++
T Consensus 91 V~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~--~~~-~~~~~~SAktg~gv~~l 163 (301)
T 1u0l_A 91 VVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY--SGL-YPIVKTSAKTGMGIEEL 163 (301)
T ss_dssp EECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH--TTT-SCEEECCTTTCTTHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHH--hhh-CcEEEEECCCCcCHHHH
Confidence 58999887 67777788876643 368999999999996432211222222111 112 67999999999999999
Q ss_pred HHHHHHh
Q psy2977 80 LQWLIAH 86 (92)
Q Consensus 80 ~~~l~~~ 86 (92)
|.++...
T Consensus 164 f~~l~ge 170 (301)
T 1u0l_A 164 KEYLKGK 170 (301)
T ss_dssp HHHHSSS
T ss_pred HHHhcCC
Confidence 9988654
No 112
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.45 E-value=1.5e-14 Score=83.08 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=53.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.+++. ..|+..+.... ..++|+++|+||+|+.+... .. ......++++|||++|.||+++|
T Consensus 90 v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~--------~~--~~~~~~~~~~~SA~~g~gv~~l~ 157 (172)
T 2gj8_A 90 MVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGETL--------GM--SEVNGHALIRLSARTGEGVDVLR 157 (172)
T ss_dssp EEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC--------EE--EEETTEEEEECCTTTCTTHHHHH
T ss_pred EEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcchh--------hh--hhccCCceEEEeCCCCCCHHHHH
Confidence 578888777653 35665555432 24689999999999853210 00 11235689999999999999999
Q ss_pred HHHHHhhhh
Q psy2977 81 QWLIAHSKS 89 (92)
Q Consensus 81 ~~l~~~i~~ 89 (92)
++|.+.+..
T Consensus 158 ~~l~~~~~~ 166 (172)
T 2gj8_A 158 NHLKQSMGF 166 (172)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHhhh
Confidence 999988754
No 113
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.43 E-value=1.2e-13 Score=87.12 Aligned_cols=84 Identities=18% Similarity=0.290 Sum_probs=61.1
Q ss_pred CeeCCc---hhhHHHHHHHHHHhhcCC-CCCCCcEEEEeeCCCCCCCCC-HHHHHHhhccCCcCCCceEEEeeccccCCC
Q psy2977 1 MVDAAD---TDKLEASRNELHALIEKP-QLIGIPILVLGNKRDLPNALD-EKELIDRMNLCAIQDREICCYSISCKERDN 75 (92)
Q Consensus 1 v~D~s~---~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 75 (92)
|+|+++ +.+++....|+.++.... ...++|+++|+||+|++.... .+++.+.+. ...+++++||++++|
T Consensus 243 VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~------~~~~v~~iSA~tg~g 316 (342)
T 1lnz_A 243 VIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT------DDYPVFPISAVTREG 316 (342)
T ss_dssp EEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------SCCCBCCCSSCCSST
T ss_pred EEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh------cCCCEEEEECCCCcC
Confidence 579988 778888777777776532 246799999999999974211 122333221 115689999999999
Q ss_pred HHHHHHHHHHhhhhc
Q psy2977 76 IDITLQWLIAHSKSH 90 (92)
Q Consensus 76 i~~~~~~l~~~i~~~ 90 (92)
+++++++|.+.+.+.
T Consensus 317 i~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 317 LRELLFEVANQLENT 331 (342)
T ss_dssp THHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999998754
No 114
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.43 E-value=7.5e-13 Score=75.54 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=54.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCc--CC--CceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAI--QD--REICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~SA~~~~gi 76 (92)
|+|++++... .....+..+.. .++|+++|+||+|+... ..+++...+..... .. ...++++|||++|.|+
T Consensus 85 v~d~~~~~~~-~~~~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 85 VVAADDGVMP-QTVEAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp EEETTCCCCH-HHHHHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred EEECCCCCcH-HHHHHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence 4677763221 11223333321 36899999999999753 33444443322111 11 1368999999999999
Q ss_pred HHHHHHHHHhhhhcC
Q psy2977 77 DITLQWLIAHSKSHT 91 (92)
Q Consensus 77 ~~~~~~l~~~i~~~~ 91 (92)
+++|++|.+.+...+
T Consensus 159 ~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 159 DHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhc
Confidence 999999999886543
No 115
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.41 E-value=2.4e-13 Score=86.00 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=58.6
Q ss_pred CeeCCchh--hHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTD--KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|++++. ++.....|+..+.... .+.|+++|+||+|+......++....+. ..+.++++|||++|+||++
T Consensus 253 V~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~iSA~~g~gi~~ 325 (357)
T 2e87_A 253 IFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFVK-----EKGLNPIKISALKGTGIDL 325 (357)
T ss_dssp EECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHHH-----HTTCCCEECBTTTTBTHHH
T ss_pred EEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHHH-----hcCCCeEEEeCCCCcCHHH
Confidence 57888766 6676677777776532 2789999999999974322222222221 2245689999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
++++|.+.+..
T Consensus 326 l~~~i~~~l~~ 336 (357)
T 2e87_A 326 VKEEIIKTLRP 336 (357)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 116
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.39 E-value=4.3e-14 Score=80.44 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=50.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--C--CHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--L--DEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|+++.++. ..|+.++.. .++|+++|+||+|+... . ..+.+.+.+ +++++++||++|.||
T Consensus 88 v~D~~~~~~~---~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 88 IVDATALERN---LYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVPLSAAKKMGI 152 (165)
T ss_dssp EEETTCHHHH---HHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBGGGTBSH
T ss_pred EecCCchhHh---HHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHh--------CCCEEEEEcCCCCCH
Confidence 4677765433 346666543 25899999999998531 1 122333322 356899999999999
Q ss_pred HHHHHHHHHhhh
Q psy2977 77 DITLQWLIAHSK 88 (92)
Q Consensus 77 ~~~~~~l~~~i~ 88 (92)
+++|++|.+.++
T Consensus 153 ~~l~~~l~~~~~ 164 (165)
T 2wji_A 153 EELKKAISIAVK 164 (165)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999998774
No 117
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.38 E-value=1.1e-13 Score=87.74 Aligned_cols=84 Identities=10% Similarity=0.162 Sum_probs=59.0
Q ss_pred chhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC----CC-------------------HHHHHHhhcc-------
Q psy2977 6 DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA----LD-------------------EKELIDRMNL------- 55 (92)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~----~~-------------------~~~~~~~~~~------- 55 (92)
+.++|+++..|+..+..+....+.|++|++||+|+... .+ .++..+.+..
T Consensus 228 ~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~ 307 (354)
T 2xtz_A 228 QKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYY 307 (354)
T ss_dssp TSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhh
Confidence 78899999999999987644567999999999998421 11 1222221110
Q ss_pred -CC---cCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 56 -CA---IQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 56 -~~---~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
.. ...+.+.+++|||++|.||+++|.++.+.+.+
T Consensus 308 ~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 308 QNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR 345 (354)
T ss_dssp HTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence 00 00234667899999999999999999998764
No 118
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.37 E-value=6.7e-13 Score=83.34 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=65.8
Q ss_pred eCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC------------------CCCHHHHHHhh-----ccCCcC
Q psy2977 3 DAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN------------------ALDEKELIDRM-----NLCAIQ 59 (92)
Q Consensus 3 D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~------------------~~~~~~~~~~~-----~~~~~~ 59 (92)
|.++.+++.++..|+..+..+....+.|++|++||+|+.. ..+.++..+.+ .+....
T Consensus 209 d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~ 288 (327)
T 3ohm_A 209 ESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDS 288 (327)
T ss_dssp SCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTT
T ss_pred ccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccc
Confidence 5557889999999999998876567899999999999843 12333333321 122123
Q ss_pred CCceEEEeeccccCCCHHHHHHHHHHhhhhc
Q psy2977 60 DREICCYSISCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 60 ~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
.+++.+++|||+++.||+.+|..+.+.+.++
T Consensus 289 ~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 289 DKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp TSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999988654
No 119
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.35 E-value=8.3e-13 Score=78.04 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=51.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHH----HHHHhhccCC--cCCCceEEEeeccccCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK----ELIDRMNLCA--IQDREICCYSISCKERD 74 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~SA~~~~ 74 (92)
|+|+++..+. ....++..+.. .++|+++|+||+|+....... .+.+.+.... ......+++++||++|.
T Consensus 122 v~d~~~~~~~-~~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~ 196 (223)
T 4dhe_A 122 MMDARRPLTE-LDRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRT 196 (223)
T ss_dssp EEETTSCCCH-HHHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTB
T ss_pred EEeCCCCCCH-HHHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCc
Confidence 4677754321 11233333332 368999999999997432211 1122221000 00245789999999999
Q ss_pred CHHHHHHHHHHhhhh
Q psy2977 75 NIDITLQWLIAHSKS 89 (92)
Q Consensus 75 gi~~~~~~l~~~i~~ 89 (92)
||+++|++|.+.+..
T Consensus 197 gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 197 GLDDAHALIESWLRP 211 (223)
T ss_dssp SHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHhcCc
Confidence 999999999998864
No 120
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.34 E-value=1.6e-12 Score=81.61 Aligned_cols=86 Identities=14% Similarity=0.122 Sum_probs=53.8
Q ss_pred CeeCCch--hhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCH----HHHHHhhccCCcC----CCceEEEeecc
Q psy2977 1 MVDAADT--DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE----KELIDRMNLCAIQ----DREICCYSISC 70 (92)
Q Consensus 1 v~D~s~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~SA 70 (92)
|||++++ +.+.....|+.++... .+++|+++++||+|+...... .++....+..... ..+..+++|||
T Consensus 79 V~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSA 156 (331)
T 3r7w_B 79 VIDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSI 156 (331)
T ss_dssp ECCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCS
T ss_pred EEECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEecc
Confidence 5799987 2222223334433322 257999999999999743211 2233322211112 24689999999
Q ss_pred ccCCCHHHHHHHHHHhhhh
Q psy2977 71 KERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 71 ~~~~gi~~~~~~l~~~i~~ 89 (92)
++ .||.++|..+++.+.+
T Consensus 157 kd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 157 FD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp SS-SHHHHHHHHHHTTSST
T ss_pred CC-CcHHHHHHHHHHHHHh
Confidence 98 5999999999988754
No 121
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.34 E-value=4.2e-13 Score=75.42 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=48.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCce-EEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREI-CCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~SA~~~~gi~~~ 79 (92)
|+|++++.+.. ..++.+.+.. .+.|+++|+||+|+.+. .+++.+.. ..+. +++++||++|.|++++
T Consensus 86 v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~------~~~~~~~~~~Sa~~~~gv~~l 152 (161)
T 2dyk_A 86 AVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKH--ELYLGPLY------GLGFGDPIPTSSEHARGLEEL 152 (161)
T ss_dssp EEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGG--GGGCGGGG------GGSSCSCEECBTTTTBSHHHH
T ss_pred EEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccc--hHhHHHHH------hCCCCCeEEEecccCCChHHH
Confidence 46777643322 2344444432 36899999999999643 11221111 1223 5899999999999999
Q ss_pred HHHHHHhh
Q psy2977 80 LQWLIAHS 87 (92)
Q Consensus 80 ~~~l~~~i 87 (92)
|++|.+.+
T Consensus 153 ~~~l~~~l 160 (161)
T 2dyk_A 153 LEAIWERL 160 (161)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99998875
No 122
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.32 E-value=1e-12 Score=81.69 Aligned_cols=77 Identities=18% Similarity=0.123 Sum_probs=54.3
Q ss_pred CeeCCchh-hHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD---EKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... .++..+.+. ..+++++++||++|.|+
T Consensus 86 V~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~-----~~g~~~~~~SA~~g~gi 156 (302)
T 2yv5_A 86 VETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYR-----DAGYDVLKVSAKTGEGI 156 (302)
T ss_dssp EECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHH-----HTTCEEEECCTTTCTTH
T ss_pred EEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHH-----HCCCeEEEEECCCCCCH
Confidence 57999886 78777778776543 4689999999999964211 112222211 12467999999999999
Q ss_pred HHHHHHHHHh
Q psy2977 77 DITLQWLIAH 86 (92)
Q Consensus 77 ~~~~~~l~~~ 86 (92)
++++.++...
T Consensus 157 ~~L~~~l~G~ 166 (302)
T 2yv5_A 157 DELVDYLEGF 166 (302)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHhhccCc
Confidence 9999987654
No 123
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.31 E-value=1.9e-13 Score=87.86 Aligned_cols=89 Identities=13% Similarity=0.093 Sum_probs=63.5
Q ss_pred CeeCCc----------hhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC-----C-C-------------------
Q psy2977 1 MVDAAD----------TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-----L-D------------------- 45 (92)
Q Consensus 1 v~D~s~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-----~-~------------------- 45 (92)
|+|+++ .++|.++..|+..+.......+.|++|++||+|+... . +
T Consensus 247 V~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~ 326 (402)
T 1azs_C 247 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP 326 (402)
T ss_dssp EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCC
T ss_pred EEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhcccccccccccccccc
Confidence 578888 8899999999999987655578999999999998421 0 0
Q ss_pred -------HHHHHHhh-----ccCC---cCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 46 -------EKELIDRM-----NLCA---IQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 46 -------~~~~~~~~-----~~~~---~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
.++....+ .... -..+.+.+++|||+++.||+++|.++.+.+.+
T Consensus 327 ~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 327 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 11111110 1000 01135678899999999999999999988764
No 124
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.31 E-value=2.6e-12 Score=79.93 Aligned_cols=83 Identities=19% Similarity=0.159 Sum_probs=56.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCC-CCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP-NALDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|+++..++.....|+..+.. .+.|+++|+||+|+. +.....+..+.+.. ......+++++||++|.|++++
T Consensus 99 VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~--~~~~~~~i~~vSA~~g~gv~~L 172 (308)
T 3iev_A 99 MIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHK--KHPELTEIVPISALKGANLDEL 172 (308)
T ss_dssp EEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHH--HCTTCCCEEECBTTTTBSHHHH
T ss_pred EEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHH--hccCCCeEEEEeCCCCCCHHHH
Confidence 5788887777665555666543 368999999999996 32222222222210 0112356999999999999999
Q ss_pred HHHHHHhhhh
Q psy2977 80 LQWLIAHSKS 89 (92)
Q Consensus 80 ~~~l~~~i~~ 89 (92)
|++|.+.+..
T Consensus 173 ~~~l~~~l~~ 182 (308)
T 3iev_A 173 VKTILKYLPE 182 (308)
T ss_dssp HHHHHHHSCB
T ss_pred HHHHHHhCcc
Confidence 9999998754
No 125
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.28 E-value=4.3e-13 Score=77.32 Aligned_cols=74 Identities=26% Similarity=0.284 Sum_probs=52.4
Q ss_pred eeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC----CHHHHHHhhccCCcCCCceEEEeeccccCCCHH
Q psy2977 2 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL----DEKELIDRMNLCAIQDREICCYSISCKERDNID 77 (92)
Q Consensus 2 ~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 77 (92)
+|.++ ++....|+..+.. .+.|+++|+||+|+.... ..+++.+.+ +++++++||++|.|++
T Consensus 93 ~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~~v~ 157 (188)
T 2wjg_A 93 VDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVPLSAAKKMGIE 157 (188)
T ss_dssp EEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBGGGTBSHH
T ss_pred ecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHh--------CCCeEEEEecCCCCHH
Confidence 45543 5555567776654 368999999999985321 223333332 3568999999999999
Q ss_pred HHHHHHHHhhhhc
Q psy2977 78 ITLQWLIAHSKSH 90 (92)
Q Consensus 78 ~~~~~l~~~i~~~ 90 (92)
++|++|.+.+.+.
T Consensus 158 ~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 158 ELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 126
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.27 E-value=2e-11 Score=80.03 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=54.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.+++.. ..+ +.+ .++|+++|+||+|+....+.+++.+..+ ...++++|||++|+||++++
T Consensus 330 VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAktg~Gi~eL~ 396 (482)
T 1xzp_A 330 VLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALKGEGLEKLE 396 (482)
T ss_dssp EEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGGTCCHHHHH
T ss_pred EecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCCCCCHHHHH
Confidence 5798887776543 223 333 2689999999999976555555554322 22468999999999999999
Q ss_pred HHHHHhhh
Q psy2977 81 QWLIAHSK 88 (92)
Q Consensus 81 ~~l~~~i~ 88 (92)
++|.+.+.
T Consensus 397 ~~l~~~~~ 404 (482)
T 1xzp_A 397 ESIYRETQ 404 (482)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHh
Confidence 99998764
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.26 E-value=7.6e-12 Score=80.98 Aligned_cols=84 Identities=14% Similarity=0.062 Sum_probs=56.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD--EKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|+++..+++.. .|+..+.. .++|+++|+||+|+.+... .+++.+.+..........+++++||++|.||++
T Consensus 264 v~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~ 338 (436)
T 2hjg_A 264 VLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHT 338 (436)
T ss_dssp EEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGG
T ss_pred EEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHH
Confidence 5788887666554 46655543 3689999999999975432 233332221110011245799999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|+++.+.+.+
T Consensus 339 l~~~i~~~~~~ 349 (436)
T 2hjg_A 339 LMPAIIKASEN 349 (436)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 128
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.26 E-value=3.1e-11 Score=70.40 Aligned_cols=83 Identities=18% Similarity=0.216 Sum_probs=60.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|+++..++.....|+..+... .....|+++++||+|+... ....+...... ..++.++++||+++.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-----~~~~~~~d~Sal~~~~i~~ 157 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNNLSFIETSALDSTNVEE 157 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHH
Confidence 47889888888877787765432 1246899999999999642 23333333221 2346788999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|++|.+.+.+
T Consensus 158 l~~~l~~~~~~ 168 (199)
T 2f9l_A 158 AFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 129
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.23 E-value=9.8e-13 Score=80.74 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=51.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC----CCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA----LDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|+++.++. ..|..++.. .++|+++|+||+|+... .....+.+.+ ++++++|||++|.||
T Consensus 87 V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 87 VVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL--------GVPVVATSALKQTGV 151 (272)
T ss_dssp EEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBTTTTBSH
T ss_pred EecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc--------CCCEEEEEccCCCCH
Confidence 5688776543 345555543 36899999999998531 1233344333 356999999999999
Q ss_pred HHHHHHHHHhhh
Q psy2977 77 DITLQWLIAHSK 88 (92)
Q Consensus 77 ~~~~~~l~~~i~ 88 (92)
+++|++|.+.+.
T Consensus 152 ~el~~~i~~~~~ 163 (272)
T 3b1v_A 152 DQVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHHHSCT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 130
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.23 E-value=2.2e-11 Score=80.49 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=51.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|+++.+.+ ..|+..+.... .+.|+++|+||+|+.... ..+++.+.+. ..+.++++|||++|.||++
T Consensus 128 V~D~s~~~~~---~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~vSA~~g~gi~e 197 (535)
T 3dpu_A 128 LLDSRTDSNK---HYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENRFHRISCKNGDGVES 197 (535)
T ss_dssp EECGGGGGGH---HHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTCEEECCC-----CTT
T ss_pred EEeCCCchhH---HHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCceEEEecCcccCHHH
Confidence 5788776544 45565555432 368999999999997532 3444555432 2245699999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|++|.+.+.+.
T Consensus 198 L~~~l~~~~~~~ 209 (535)
T 3dpu_A 198 IAKSLKSAVLHP 209 (535)
T ss_dssp HHHHHHHHHTCT
T ss_pred HHHHHHHHHhcc
Confidence 999999988653
No 131
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.23 E-value=1.1e-11 Score=80.70 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=53.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|+++.-. +....++..+.. .++|+++|+||+|+.+.. ..+++.+.+..........++++|||++|.||++
T Consensus 284 viD~~~~~~-~~~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 358 (456)
T 4dcu_A 284 VLDGEEGII-EQDKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHT 358 (456)
T ss_dssp EEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGG
T ss_pred EEeCCCCcC-HHHHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHH
Confidence 467776322 222234444432 358999999999997532 2334333322110011246799999999999999
Q ss_pred HHHHHHHhhhhc
Q psy2977 79 TLQWLIAHSKSH 90 (92)
Q Consensus 79 ~~~~l~~~i~~~ 90 (92)
+|+++.+.+.+.
T Consensus 359 l~~~i~~~~~~~ 370 (456)
T 4dcu_A 359 LMPAIIKASENH 370 (456)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999887543
No 132
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.22 E-value=3.5e-13 Score=82.67 Aligned_cols=74 Identities=19% Similarity=0.177 Sum_probs=51.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC----CHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL----DEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|+++.++......++.+. ++|+++|+||+|+.... ..+.+.+.+ +++++++||++|.|+
T Consensus 92 VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~i~~SA~~g~gi 156 (274)
T 3i8s_A 92 VVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARL--------GCPVIPLVSTRGRGI 156 (274)
T ss_dssp EEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHH--------TSCEEECCCGGGHHH
T ss_pred EecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhc--------CCCEEEEEcCCCCCH
Confidence 56888765544333333322 58999999999985321 233343333 356999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy2977 77 DITLQWLIAHSKS 89 (92)
Q Consensus 77 ~~~~~~l~~~i~~ 89 (92)
+++|++|.+.+..
T Consensus 157 ~el~~~i~~~~~~ 169 (274)
T 3i8s_A 157 EALKLAIDRYKAN 169 (274)
T ss_dssp HHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
No 133
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.21 E-value=2e-11 Score=79.93 Aligned_cols=74 Identities=22% Similarity=0.129 Sum_probs=51.7
Q ss_pred CeeCCchhhHHH---HHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHH--HHHhhccCCcCCCceEEEeeccccCCC
Q psy2977 1 MVDAADTDKLEA---SRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKE--LIDRMNLCAIQDREICCYSISCKERDN 75 (92)
Q Consensus 1 v~D~s~~~~~~~---~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~SA~~~~g 75 (92)
|+|++++.++.. ...++..+ .++|+++|+||+|+........ +.+. ...++++|||++|.|
T Consensus 319 VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~~~~~l~~~--------~~~~~i~vSAktg~G 384 (476)
T 3gee_A 319 LLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADALIRAIADG--------TGTEVIGISALNGDG 384 (476)
T ss_dssp EEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHHHHHHHHHH--------HTSCEEECBTTTTBS
T ss_pred EEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccchhHHHHHhc--------CCCceEEEEECCCCC
Confidence 578888776643 22333332 2689999999999975433221 2111 014689999999999
Q ss_pred HHHHHHHHHHhhh
Q psy2977 76 IDITLQWLIAHSK 88 (92)
Q Consensus 76 i~~~~~~l~~~i~ 88 (92)
|+++|++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999886
No 134
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.21 E-value=5.9e-13 Score=81.04 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=49.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC----CCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA----LDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|+++.++... +...+.. .++|+++|+||+|+... .....+.+.+ +++++++||++|.|+
T Consensus 90 VvDas~~~~~~~---l~~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~SA~~g~gi 154 (256)
T 3iby_A 90 VIDACHLERHLY---LTSQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLL--------GCSVIPIQAHKNIGI 154 (256)
T ss_dssp EEEGGGHHHHHH---HHHHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH--------CSCEEECBGGGTBSH
T ss_pred EeeCCCchhHHH---HHHHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc--------CCCEEEEECCCCCCH
Confidence 578887655433 3333332 26899999999998532 1233344433 357999999999999
Q ss_pred HHHHHHHHHh
Q psy2977 77 DITLQWLIAH 86 (92)
Q Consensus 77 ~~~~~~l~~~ 86 (92)
+++|++|.+.
T Consensus 155 ~el~~~i~~~ 164 (256)
T 3iby_A 155 PALQQSLLHC 164 (256)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999999886
No 135
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.20 E-value=2.1e-11 Score=74.27 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=52.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC----CCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA----LDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|+++.++. ..|+.++.. .++|+++|+||+|+... .....+.+.+ +++++++||++|.|+
T Consensus 90 V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l--------g~~vi~~SA~~g~gi 154 (258)
T 3a1s_A 90 VADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL--------GIPVVFTSSVTGEGL 154 (258)
T ss_dssp EEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH--------CSCEEECCTTTCTTH
T ss_pred EeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHc--------CCCEEEEEeeCCcCH
Confidence 5788876543 245555553 26899999999998431 1233444433 357999999999999
Q ss_pred HHHHHHHHHhhh
Q psy2977 77 DITLQWLIAHSK 88 (92)
Q Consensus 77 ~~~~~~l~~~i~ 88 (92)
+++|++|.+.+.
T Consensus 155 ~el~~~i~~~~~ 166 (258)
T 3a1s_A 155 EELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
No 136
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.19 E-value=2e-11 Score=79.00 Aligned_cols=66 Identities=20% Similarity=0.153 Sum_probs=48.3
Q ss_pred HHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 14 RNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 14 ~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
..|+..+... ++|+++|+||+|+...... +..+.+. ...+.+++++||++|.|++++|++|.+.+.
T Consensus 130 ~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 130 DDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp HHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred HHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3455555433 6899999999999865443 2333332 233567999999999999999999999884
No 137
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.18 E-value=9.2e-11 Score=68.13 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=57.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
|+|.++..+++....|+..+.... ....|+++++||+|+.+. ....+...... ..++.++.+||+++.|+++
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-----~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 478888888887777776654321 246899999999999642 23333333221 2346788999999999999
Q ss_pred HHHHHHHhh
Q psy2977 79 TLQWLIAHS 87 (92)
Q Consensus 79 ~~~~l~~~i 87 (92)
+|++|.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998865
No 138
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.16 E-value=2.8e-11 Score=77.69 Aligned_cols=84 Identities=15% Similarity=0.079 Sum_probs=54.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHH----HHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK----ELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|+++..++....+++..+... ...|+++|+||+|+.+..... ++.+.+.. ......+++++||++|.|+
T Consensus 105 Vvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~--~~~~~~~ii~vSA~~g~gi 179 (403)
T 3sjy_A 105 VVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG--TWAENVPIIPVSALHKINI 179 (403)
T ss_dssp EEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT--STTTTCCEEECBTTTTBSH
T ss_pred EEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh--hCCCCCEEEEEECCCCcCh
Confidence 57887765555655665544321 235899999999997532111 22222211 1123567999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy2977 77 DITLQWLIAHSKS 89 (92)
Q Consensus 77 ~~~~~~l~~~i~~ 89 (92)
++++++|.+.+..
T Consensus 180 ~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 180 DSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999987643
No 139
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.16 E-value=2.2e-11 Score=76.82 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=60.4
Q ss_pred chhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC-----------------CCHHHHH----Hhh-------ccCC
Q psy2977 6 DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-----------------LDEKELI----DRM-------NLCA 57 (92)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-----------------~~~~~~~----~~~-------~~~~ 57 (92)
+.+++.++..|+..+..+....+.|++|++||+|+... .+.++.. ..+ .+..
T Consensus 206 ~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~ 285 (340)
T 4fid_A 206 NTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNI 285 (340)
T ss_dssp CSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC
T ss_pred ccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhc
Confidence 67899999999999988765678999999999998421 1222221 222 1111
Q ss_pred cCC-----------CceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 58 IQD-----------REICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 58 ~~~-----------~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
... +.+.+++|||+++.||+.+|..+.+.+.+
T Consensus 286 ~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 286 SGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp --------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 111 35788999999999999999999988754
No 140
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.14 E-value=1.5e-11 Score=76.45 Aligned_cols=80 Identities=18% Similarity=0.149 Sum_probs=55.4
Q ss_pred CeeCCchhhHHHHHHH---HHHhhcCCCCCCCcEEEEeeCCCCCCCCCH--------HHHHHhhccCCcCCC---ceEEE
Q psy2977 1 MVDAADTDKLEASRNE---LHALIEKPQLIGIPILVLGNKRDLPNALDE--------KELIDRMNLCAIQDR---EICCY 66 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~---~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~---~~~~~ 66 (92)
|+|++++++++....| +.++... ..++|+++|+||+|+...... +++.+.. ... ..+++
T Consensus 87 V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~-----~~~g~~~~~~~ 159 (307)
T 3r7w_A 87 VFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETS-----SEFGFPNLIGF 159 (307)
T ss_dssp EEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH-----HTTTCCSCEEE
T ss_pred EEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHH-----HHcCCCCeEEE
Confidence 6899999998887555 4444332 247999999999999742111 1222221 112 37899
Q ss_pred eeccccCCCHHHHHHHHHHhhh
Q psy2977 67 SISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 67 ~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
+|||++ .|+.++|..+...+.
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTTC
T ss_pred EeeecC-ChHHHHHHHHHHHHc
Confidence 999999 899999999887654
No 141
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.14 E-value=2.4e-11 Score=75.51 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=52.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD-EKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|++++.+.. ..|+.+.+... ..+.|+++|+||+|+..... ..+..+.+ ....+++++||++|.|++++
T Consensus 93 VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~~g~gv~~l 163 (301)
T 1wf3_A 93 VVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSALDERQVAEL 163 (301)
T ss_dssp EEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTTCHHHHHHH
T ss_pred EEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCCCCCCHHHH
Confidence 57888754332 34554444332 14689999999999974322 11222221 12346899999999999999
Q ss_pred HHHHHHhhhh
Q psy2977 80 LQWLIAHSKS 89 (92)
Q Consensus 80 ~~~l~~~i~~ 89 (92)
|++|.+.+..
T Consensus 164 ~~~l~~~l~~ 173 (301)
T 1wf3_A 164 KADLLALMPE 173 (301)
T ss_dssp HHHHHTTCCB
T ss_pred HHHHHHhccc
Confidence 9999987643
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.09 E-value=3.2e-10 Score=74.11 Aligned_cols=75 Identities=15% Similarity=0.083 Sum_probs=50.6
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|++++.+... ..++..+ ...|+++|+||+|+....... . .... ....+++++||++|.|+++++
T Consensus 310 VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~--~~~~-~~~~~~i~iSAktg~Gi~eL~ 375 (462)
T 3geh_A 310 TIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----S--LEYP-ENITQIVHTAAAQKQGIDSLE 375 (462)
T ss_dssp EEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----T--CCCC-TTCCCEEEEBTTTTBSHHHHH
T ss_pred EeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----H--HHHh-ccCCcEEEEECCCCCCHHHHH
Confidence 578887655433 2344433 236999999999997432211 1 1111 134578999999999999999
Q ss_pred HHHHHhhhh
Q psy2977 81 QWLIAHSKS 89 (92)
Q Consensus 81 ~~l~~~i~~ 89 (92)
++|.+.+..
T Consensus 376 ~~i~~~~~~ 384 (462)
T 3geh_A 376 TAILEIVQT 384 (462)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 999998764
No 143
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.08 E-value=7e-10 Score=71.31 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=36.6
Q ss_pred CcEEEEeeCCCCCCCCC----HHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 29 IPILVLGNKRDLPNALD----EKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.|+++++||+|+.+... .+++.+.+... .....+++++||++|.||++++++|.+.+.
T Consensus 136 ~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 136 DKIIIVQNKIDLVDEKQAEENYEQIKEFVKGT--IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp CCEEEEEECTTSSCTTTTTTHHHHHHHHHTTS--TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred CeEEEEEEccCCCCHHHHHHHHHHHHHHHhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 58999999999975422 23444443311 123568999999999999999999998765
No 144
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.07 E-value=1.7e-10 Score=74.71 Aligned_cols=83 Identities=19% Similarity=0.048 Sum_probs=51.0
Q ss_pred eeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 2 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 2 ~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
+|+++..+... .++...+.. .++|+++|+||+|+.+.. ..+++.+.+..........+++++||++|.||+++
T Consensus 271 ~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 345 (439)
T 1mky_A 271 LDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRM 345 (439)
T ss_dssp EETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHH
T ss_pred EeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHH
Confidence 57665444332 223333322 368999999999997432 23333322211000112357899999999999999
Q ss_pred HHHHHHhhhh
Q psy2977 80 LQWLIAHSKS 89 (92)
Q Consensus 80 ~~~l~~~i~~ 89 (92)
|+.+.+.+.+
T Consensus 346 ~~~i~~~~~~ 355 (439)
T 1mky_A 346 IDAMNLAYAS 355 (439)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987754
No 145
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.07 E-value=5.1e-11 Score=75.84 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=48.8
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhccCCcCCCc---eEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRMNLCAIQDRE---ICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~SA~~~~gi 76 (92)
|+|++|+. ......+.+++ .++|+++|+||+|+.+. ...+.+.+.+... ....+ ..++.+||++|.|+
T Consensus 76 VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~-~~~~g~~~~~v~~iSA~~g~gi 147 (368)
T 3h2y_A 76 IVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYS-AKQLGLKPEDVFLISAAKGQGI 147 (368)
T ss_dssp EEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHH-HHHTTCCCSEEEECCTTTCTTH
T ss_pred EEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHH-HHHcCCCcccEEEEeCCCCcCH
Confidence 57888753 11112233332 36899999999999643 2233333221100 01112 37899999999999
Q ss_pred HHHHHHHHHhh
Q psy2977 77 DITLQWLIAHS 87 (92)
Q Consensus 77 ~~~~~~l~~~i 87 (92)
++++++|.+..
T Consensus 148 ~~L~~~l~~~~ 158 (368)
T 3h2y_A 148 AELADAIEYYR 158 (368)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhhhhhc
Confidence 99999998754
No 146
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.06 E-value=2.1e-10 Score=72.95 Aligned_cols=87 Identities=20% Similarity=0.219 Sum_probs=52.3
Q ss_pred CeeCCchh--hHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhh-cc-CCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTD--KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRM-NL-CAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|++++. ....... +.+++......+.|+++|+||+|+.... ........ .+ ........+++++||++|.|+
T Consensus 264 VvD~s~~~~~~~~~~~~-~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi 341 (364)
T 2qtf_A 264 VIDSTFSENLLIETLQS-SFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSPIFDVIPISALKRTNL 341 (364)
T ss_dssp EEETTSCHHHHHHHHHH-HHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSH
T ss_pred EEECCCCcchHHHHHHH-HHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCH
Confidence 57888765 3333322 2333332233578999999999997432 22111110 00 000012456899999999999
Q ss_pred HHHHHHHHHhhhh
Q psy2977 77 DITLQWLIAHSKS 89 (92)
Q Consensus 77 ~~~~~~l~~~i~~ 89 (92)
++++++|.+.+..
T Consensus 342 ~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 342 ELLRDKIYQLATQ 354 (364)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988764
No 147
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.05 E-value=5.6e-10 Score=74.91 Aligned_cols=82 Identities=21% Similarity=0.182 Sum_probs=53.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++....+....|.... . .++|+++++||+|++... .+++.+.+... +......++++||++|.||+++|
T Consensus 103 VVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~-lg~~~~~vi~vSAktg~GI~~Ll 175 (600)
T 2ywe_A 103 LIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEV-LGLDPEEAILASAKEGIGIEEIL 175 (600)
T ss_dssp EEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHT-SCCCGGGCEECBTTTTBSHHHHH
T ss_pred EEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHh-hCCCcccEEEEEeecCCCchHHH
Confidence 57888765555544444333 2 368999999999998643 33322222110 01112348999999999999999
Q ss_pred HHHHHhhhh
Q psy2977 81 QWLIAHSKS 89 (92)
Q Consensus 81 ~~l~~~i~~ 89 (92)
++|.+.+..
T Consensus 176 e~I~~~lp~ 184 (600)
T 2ywe_A 176 EAIVNRIPP 184 (600)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHhccc
Confidence 999988753
No 148
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.02 E-value=4.9e-10 Score=68.39 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=51.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC----CCCHHHHHHhhccCCcCCCceEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN----ALDEKELIDRMNLCAIQDREICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 76 (92)
|+|+++.+ ....++.++... ..+|+++|+||+|+.. ......+.+.+ +.+++++||++|.|+
T Consensus 88 v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 88 IVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVIPTNAKKGEGV 153 (271)
T ss_dssp EEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEEECBGGGTBTH
T ss_pred EecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEEEEEeCCCCCH
Confidence 45666543 333445555433 2389999999999742 12334444443 356899999999999
Q ss_pred HHHHHHHHHhhhhc
Q psy2977 77 DITLQWLIAHSKSH 90 (92)
Q Consensus 77 ~~~~~~l~~~i~~~ 90 (92)
+++|+++.+.+...
T Consensus 154 ~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 154 EELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887543
No 149
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.02 E-value=2.2e-10 Score=74.02 Aligned_cols=84 Identities=23% Similarity=0.194 Sum_probs=55.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCC-CCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKP-QLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
++|++ ..++.....+..++.... .+...|.++++||+|+......+.+.+.+. ..++.++.+||++++|++++
T Consensus 242 vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 242 VLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAGLPAL 315 (416)
T ss_dssp EEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTCTTHHHH
T ss_pred EeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEEEEECCCccCHHHH
Confidence 46776 445555555555544321 123579999999999874311122333221 23467999999999999999
Q ss_pred HHHHHHhhhhc
Q psy2977 80 LQWLIAHSKSH 90 (92)
Q Consensus 80 ~~~l~~~i~~~ 90 (92)
+++|.+.+.+.
T Consensus 316 ~~~i~~~l~~~ 326 (416)
T 1udx_A 316 KEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHhc
Confidence 99999988654
No 150
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.02 E-value=6.1e-10 Score=74.75 Aligned_cols=79 Identities=24% Similarity=0.256 Sum_probs=53.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhccCCcCCCceEEEeeccccCCCHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE---KELIDRMNLCAIQDREICCYSISCKERDNID 77 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 77 (92)
|+|+++....+....|.... . .++|+++++||+|+++.... +++.+.++.. ...++++||++|.||+
T Consensus 101 VVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~-----~~~vi~vSAktg~GI~ 170 (599)
T 3cb4_D 101 VVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGID-----ATDAVRCSAKTGVGVQ 170 (599)
T ss_dssp EEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC-----CTTCEEECTTTCTTHH
T ss_pred EEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCC-----cceEEEeecccCCCch
Confidence 57888755554444444333 2 35799999999999864322 2333333221 1247999999999999
Q ss_pred HHHHHHHHhhhh
Q psy2977 78 ITLQWLIAHSKS 89 (92)
Q Consensus 78 ~~~~~l~~~i~~ 89 (92)
+++++|.+.+..
T Consensus 171 ~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 171 DVLERLVRDIPP 182 (599)
T ss_dssp HHHHHHHHHSCC
T ss_pred hHHHHHhhcCCC
Confidence 999999988753
No 151
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.02 E-value=1.3e-09 Score=73.03 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=24.5
Q ss_pred CceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 61 REICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 61 ~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
..++++++||++|.||++++++|...+.
T Consensus 190 ~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 190 SQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp TEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 3468999999999999999999987664
No 152
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.01 E-value=1e-09 Score=71.09 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=49.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCce-EEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREI-CCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~SA~~~~gi~~~ 79 (92)
|+|+++..+.. ..++.+.+.. .++|+++|+||+|+.... .+..+ ....+. .++++||++|.|++++
T Consensus 89 vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~--~~~~~------~~~lg~~~~~~iSA~~g~gv~~L 155 (436)
T 2hjg_A 89 MVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYD------FYSLGFGEPYPISGTHGLGLGDL 155 (436)
T ss_dssp EEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------CCCS------SGGGSSCCCEECBTTTTBTHHHH
T ss_pred EEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccch--hhHHH------HHHcCCCCeEEEeCcCCCChHHH
Confidence 46877654433 2456565543 468999999999986421 11111 111122 5799999999999999
Q ss_pred HHHHHHhhhh
Q psy2977 80 LQWLIAHSKS 89 (92)
Q Consensus 80 ~~~l~~~i~~ 89 (92)
++++.+.+.+
T Consensus 156 ~~~i~~~l~~ 165 (436)
T 2hjg_A 156 LDAVAEHFKN 165 (436)
T ss_dssp HHHHHHTGGG
T ss_pred HHHHHHhcCc
Confidence 9999998863
No 153
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.01 E-value=4.7e-10 Score=74.47 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=51.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhccCCcCCCceEEEeeccccCCCHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD---EKELIDRMNLCAIQDREICCYSISCKERDNID 77 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 77 (92)
|+|+++..... ....+..+.. .++|+++++||+|+++... ..++..............+++++||++|.|++
T Consensus 82 VVDa~dg~~~q-t~e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 82 VVAADDGVMKQ-TVESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp ECBSSSCCCHH-HHHHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEECCCCccHH-HHHHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 46777643332 2233443332 3679999999999975321 12232221111111235789999999999999
Q ss_pred HHHHHHHHhhh
Q psy2977 78 ITLQWLIAHSK 88 (92)
Q Consensus 78 ~~~~~l~~~i~ 88 (92)
++|++|...+.
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999988754
No 154
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.98 E-value=1.6e-10 Score=73.60 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=49.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhccCCcCCCc---eEEEeeccccCCCH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL-DEKELIDRMNLCAIQDRE---ICCYSISCKERDNI 76 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~SA~~~~gi 76 (92)
|+|++++.. .....+.+.+ .++|+++|+||+|+.+.. ..+.+.+.+... ....+ ..++.+||++|.|+
T Consensus 78 VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~-~~~~g~~~~~v~~iSA~~g~gi 149 (369)
T 3ec1_A 78 IVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRM-AEELGLCPVDVCLVSAAKGIGM 149 (369)
T ss_dssp EEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHH-HHTTTCCCSEEEECBTTTTBTH
T ss_pred EEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHH-HHHcCCCcccEEEEECCCCCCH
Confidence 578887653 1112233332 368999999999996432 233333321100 01112 37899999999999
Q ss_pred HHHHHHHHHhhh
Q psy2977 77 DITLQWLIAHSK 88 (92)
Q Consensus 77 ~~~~~~l~~~i~ 88 (92)
+++++++.+...
T Consensus 150 ~~L~~~I~~~~~ 161 (369)
T 3ec1_A 150 AKVMEAINRYRE 161 (369)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHhhcc
Confidence 999999987654
No 155
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.97 E-value=3.1e-10 Score=67.18 Aligned_cols=59 Identities=22% Similarity=0.225 Sum_probs=42.2
Q ss_pred CcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhhc
Q psy2977 29 IPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
.|.++|+||+|+.+. ...+++.+.+.. .....+++++||++|.|++++|++|.+.+...
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 455999999998642 234444443321 12246799999999999999999999988653
No 156
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.97 E-value=1e-09 Score=68.08 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=50.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCce-EEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREI-CCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~SA~~~~gi~~~ 79 (92)
|+|+++ +.....++.+.+.. .+.|.++++||+|+.. ....+.+.+.... ...++ .++++||++|.|++++
T Consensus 95 Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~--~~~~~~~~l~~l~-~~~~~~~~i~iSA~~g~~v~~l 165 (301)
T 1ega_A 95 VVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQ--EKADLLPHLQFLA-SQMNFLDIVPISAETGLNVDTI 165 (301)
T ss_dssp EEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCC--CHHHHHHHHHHHH-TTSCCSEEEECCTTTTTTHHHH
T ss_pred EEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCc--cHHHHHHHHHHHH-HhcCcCceEEEECCCCCCHHHH
Confidence 367665 33333455555443 3689999999999974 1222222211000 11223 6899999999999999
Q ss_pred HHHHHHhhhh
Q psy2977 80 LQWLIAHSKS 89 (92)
Q Consensus 80 ~~~l~~~i~~ 89 (92)
++++.+.+..
T Consensus 166 ~~~i~~~l~~ 175 (301)
T 1ega_A 166 AAIVRKHLPE 175 (301)
T ss_dssp HHHHHTTCCB
T ss_pred HHHHHHhCCc
Confidence 9999987643
No 157
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.91 E-value=8.3e-10 Score=67.81 Aligned_cols=81 Identities=15% Similarity=0.079 Sum_probs=47.4
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD-EKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
|+|+++.........++..+ .. .+.|+++|+||+|+.+... ..+..+. .+.........++++||++|.|++++
T Consensus 169 v~d~~~~~~~~~~~~~~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~SA~~~~gi~~l 243 (299)
T 2aka_B 169 VSPANSDLANSDALKIAKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDI 243 (299)
T ss_dssp EEESSSCGGGCHHHHHHHHH-CT---TCSSEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCCBCTTSCBCH
T ss_pred EecCCcchhhhHHHHHHHHh-CC---CCCeEEEEEEccccCCCCchHHHHHhC-CcCcCCCCcEEEECCChhhccccccH
Confidence 35766533322222334433 21 3689999999999975322 1121111 01111111246899999999999999
Q ss_pred HHHHHHh
Q psy2977 80 LQWLIAH 86 (92)
Q Consensus 80 ~~~l~~~ 86 (92)
+++|.+.
T Consensus 244 ~~~l~~~ 250 (299)
T 2aka_B 244 TAALAAE 250 (299)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 158
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.90 E-value=5.3e-10 Score=65.95 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=42.8
Q ss_pred CCcEEEEeeCCCCCCC--CCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 28 GIPILVLGNKRDLPNA--LDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
+.|.++|+||+|+.+. ...+++.+.+.. .....+++++||++|.|++++|++|.+.+..
T Consensus 154 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 154 RVADLIVINKVALAEAVGADVEKMKADAKL---INPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HTCSEEEEECGGGHHHHTCCHHHHHHHHHH---HCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred hcCCEEEEecccCCcchhhHHHHHHHHHHH---hCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 4688999999998532 244444444321 1224679999999999999999999988764
No 159
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.90 E-value=8.8e-10 Score=70.86 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=41.3
Q ss_pred CcEEEEeeCCCCCCCCC----HHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 29 IPILVLGNKRDLPNALD----EKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.|+++++||+|+.+... .+++.+.+.. .....++++++||++|.|+++++++|.+.+.
T Consensus 138 ~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 138 KNIIIAQNKIELVDKEKALENYRQIKEFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CcEEEEEECccCCCHHHHHHHHHHHHHHHHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 58999999999975321 1233333321 1123578999999999999999999998764
No 160
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.88 E-value=4.4e-11 Score=70.42 Aligned_cols=46 Identities=33% Similarity=0.360 Sum_probs=35.6
Q ss_pred CeeCC-chhhHHHHHHHHHHhhcCC---CCCCCcEEEEeeCCCCCCCCCH
Q psy2977 1 MVDAA-DTDKLEASRNELHALIEKP---QLIGIPILVLGNKRDLPNALDE 46 (92)
Q Consensus 1 v~D~s-~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~~~~ 46 (92)
|+|++ +++++.....|+.+++... ...++|+++|+||+|+......
T Consensus 89 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 89 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp EEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred EEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence 57998 8888988888888877532 1247999999999999866543
No 161
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.88 E-value=1.3e-09 Score=71.52 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=40.8
Q ss_pred CCcEEEEeeCCCCCCCCCHH----HHHHhhccC-CcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 28 GIPILVLGNKRDLPNALDEK----ELIDRMNLC-AIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
++|.++|+||+|+.+....+ ++.+.+... .. ...+++++||++|.|+++++++|.+.+.
T Consensus 125 ~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~--~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 125 NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL--KNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG--GGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc--ccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 57889999999997422122 222222111 11 1467999999999999999999998763
No 162
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.87 E-value=8.5e-10 Score=68.03 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=51.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+.++.+... ..+.+++ .++|.++|+||+||.+....+...+.+. ..+.+++.+||++|.|+++++
T Consensus 30 VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~-----~~g~~~i~iSA~~~~gi~~L~ 97 (282)
T 1puj_A 30 LVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFE-----NQGIRSLSINSVNGQGLNQIV 97 (282)
T ss_dssp EEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHH-----TTTCCEEECCTTTCTTGGGHH
T ss_pred EEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHH-----hcCCcEEEEECCCcccHHHHH
Confidence 578887765432 2344443 4689999999999974211122233321 224578999999999999999
Q ss_pred HHHHHhhh
Q psy2977 81 QWLIAHSK 88 (92)
Q Consensus 81 ~~l~~~i~ 88 (92)
+++.+.+.
T Consensus 98 ~~i~~~l~ 105 (282)
T 1puj_A 98 PASKEILQ 105 (282)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887765
No 163
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.83 E-value=2.1e-09 Score=69.63 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=48.1
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHH-HHhhccCCcCCCce-EEEeeccccCCCHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL-IDRMNLCAIQDREI-CCYSISCKERDNIDI 78 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~SA~~~~gi~~ 78 (92)
|+|+++..+... .++.+.+.. .++|+++|+||+|+.... ..+. .+... .+. +++++||++|.|+++
T Consensus 88 V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~------lg~~~~~~iSA~~g~gv~~ 155 (439)
T 1mky_A 88 VVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELYS------LGFGEPIPVSAEHNINLDT 155 (439)
T ss_dssp EEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGG------GSSCSCEECBTTTTBSHHH
T ss_pred EEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHh------cCCCCEEEEeccCCCCHHH
Confidence 568776433221 233333332 258999999999985210 1122 22211 122 478999999999999
Q ss_pred HHHHHHHhhhh
Q psy2977 79 TLQWLIAHSKS 89 (92)
Q Consensus 79 ~~~~l~~~i~~ 89 (92)
+|+++.+.+..
T Consensus 156 L~~~i~~~l~~ 166 (439)
T 1mky_A 156 MLETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhccc
Confidence 99999988753
No 164
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.83 E-value=4.7e-10 Score=67.76 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=24.0
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
.+++++||++|+|+++++++|.+.+..
T Consensus 231 ~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 231 VRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp CCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccceEEEecCcccHHHHHHHHHHHhcc
Confidence 368999999999999999999988754
No 165
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.81 E-value=1.1e-08 Score=67.90 Aligned_cols=26 Identities=8% Similarity=-0.038 Sum_probs=23.5
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.+++.+||++|.||+++++++.+.+.
T Consensus 251 ~PV~~gSA~~~~GV~~Lld~i~~~~p 276 (528)
T 3tr5_A 251 TPIFFGSAINNFGVGELLDAFVKEAP 276 (528)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred eEEEeccccCCccHHHHHHHHHHhCC
Confidence 37899999999999999999998874
No 166
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.75 E-value=6.2e-09 Score=68.65 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=39.1
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCc----CCCceEEEeeccccCCCHHHHHHHHHHh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAI----QDREICCYSISCKERDNIDITLQWLIAH 86 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~gi~~~~~~l~~~ 86 (92)
++|+++++||+|+++... +.+...+..... ....++++++||++|.|++++|++|...
T Consensus 103 ~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 103 QVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp TCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred CceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 679999999999975321 122222111000 1123689999999999999999999754
No 167
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.74 E-value=2.5e-09 Score=67.90 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=31.0
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
..+|+++|+||+|+........+..... ..+...+++++++||++|.| ++.|.++.+.+.+
T Consensus 173 ~~~piIlV~NK~Dl~~~~ev~~~k~~i~-~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLKERERLKKRIL-DEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp S-SCEEEEEECCSSSCHHHHHHHHHHHH-HHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHH-HHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 4689999999999974221111111111 11123467899999999999 8888888887754
No 168
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.70 E-value=2.2e-08 Score=65.15 Aligned_cols=76 Identities=20% Similarity=0.197 Sum_probs=45.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHH
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~ 80 (92)
|+|+++. +.....|+.+.+.. .++|+++|+||+|+.... ....+... + ....++++||++|.|+.+++
T Consensus 109 VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~---l--g~~~~~~iSA~~g~gv~~L~ 176 (456)
T 4dcu_A 109 MVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYS---L--GFGEPYPISGTHGLGLGDLL 176 (456)
T ss_dssp EEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGG---G--SSSSEEECCTTTCTTHHHHH
T ss_pred EEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHH---c--CCCceEEeecccccchHHHH
Confidence 4566542 22334566666654 478999999999986321 11111111 1 11236799999999999999
Q ss_pred HHHHHhhh
Q psy2977 81 QWLIAHSK 88 (92)
Q Consensus 81 ~~l~~~i~ 88 (92)
+++.+.+.
T Consensus 177 ~~i~~~l~ 184 (456)
T 4dcu_A 177 DAVAEHFK 184 (456)
T ss_dssp HHHHTTGG
T ss_pred HHHHhhcc
Confidence 99998775
No 169
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.68 E-value=2.6e-09 Score=67.57 Aligned_cols=63 Identities=16% Similarity=0.108 Sum_probs=41.5
Q ss_pred CCCcEEEEeeCCCCCCCCCHH----HHHHhhccCCcC--CCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEK----ELIDRMNLCAIQ--DREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
.+.|.++|+||+|+....... ++...+...... ....+++++||++|+||++++++|.+.+..
T Consensus 216 ~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 216 LELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 347999999999986322211 222222111000 123569999999999999999999988753
No 170
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.67 E-value=1.9e-08 Score=64.63 Aligned_cols=83 Identities=23% Similarity=0.197 Sum_probs=49.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCc-EEEEeeCCCCCCCCC-HH----HHHHhhccCCcCCCceEEEeeccccCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIP-ILVLGNKRDLPNALD-EK----ELIDRMNLCAIQDREICCYSISCKERD 74 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~SA~~~~ 74 (92)
|+|+++... ....+++..+.. .++| +++++||+|+.+... .+ ++.+.+..........+++++||++|.
T Consensus 105 Vvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~ 179 (405)
T 2c78_A 105 VVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLAL 179 (405)
T ss_dssp EEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHH
T ss_pred EEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhh
Confidence 468776432 233455544432 2577 889999999974211 11 222222211111124679999999998
Q ss_pred C------------------HHHHHHHHHHhhh
Q psy2977 75 N------------------IDITLQWLIAHSK 88 (92)
Q Consensus 75 g------------------i~~~~~~l~~~i~ 88 (92)
| +++++++|.+.+.
T Consensus 180 ~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 180 EQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred hhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 7 8888888887664
No 171
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.66 E-value=7e-09 Score=67.21 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=42.7
Q ss_pred CeeCCchhhHHHHHHHH---HH---hhcCCCCCCCcEEEEeeCCCCCCC-CCH-------HHHHHhhccCCcCCCceEEE
Q psy2977 1 MVDAADTDKLEASRNEL---HA---LIEKPQLIGIPILVLGNKRDLPNA-LDE-------KELIDRMNLCAIQDREICCY 66 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~---~~---~~~~~~~~~~p~ilv~NK~Dl~~~-~~~-------~~~~~~~~~~~~~~~~~~~~ 66 (92)
|+|+++ .+|+....|. .+ +... ..-.|+++++||+|+.+. .+. +++.+.+..........+++
T Consensus 114 VvDa~~-gsfe~~~~~~~qt~~~~~~~~~--~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i 190 (435)
T 1jny_A 114 VVSAKK-GEYEAGMSVEGQTREHIILAKT--MGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFV 190 (435)
T ss_dssp EEECST-THHHHHHSTTCHHHHHHHHHHH--TTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEE
T ss_pred EEECCC-CccccccccchHHHHHHHHHHH--cCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEE
Confidence 578887 6666433221 11 1111 122468999999999752 111 22333322111111247899
Q ss_pred eeccccCCCHHHHH
Q psy2977 67 SISCKERDNIDITL 80 (92)
Q Consensus 67 ~~SA~~~~gi~~~~ 80 (92)
++||++|.|+.+++
T Consensus 191 ~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 191 PVVAPSGDNITHKS 204 (435)
T ss_dssp ECBTTTTBTTTBCC
T ss_pred EeecccCccccccc
Confidence 99999999998543
No 172
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.65 E-value=5.3e-08 Score=62.06 Aligned_cols=79 Identities=9% Similarity=-0.022 Sum_probs=48.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcE-EEEee-CCCCCCCCCH----HHHHHhhccCCcCCCceEEEe--ecccc
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPI-LVLGN-KRDLPNALDE----KELIDRMNLCAIQDREICCYS--ISCKE 72 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~N-K~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~SA~~ 72 (92)
|+| + ...+....+++..+.. .++|. ++++| |+|+ +.... +++.+.+... ....+++++ +||++
T Consensus 90 Vvd-~-~g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~ 160 (370)
T 2elf_A 90 CIP-P-QGLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSA 160 (370)
T ss_dssp EEC-T-TCCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTS
T ss_pred EEc-C-CCCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEeccccccc
Confidence 356 3 3334444444444332 24676 88999 9999 42211 2333333211 112478999 99999
Q ss_pred ---CCCHHHHHHHHHHhhh
Q psy2977 73 ---RDNIDITLQWLIAHSK 88 (92)
Q Consensus 73 ---~~gi~~~~~~l~~~i~ 88 (92)
|.|+++++++|.+.+.
T Consensus 161 ~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 161 KNPFEGVDELKARINEVAE 179 (370)
T ss_dssp SSTTTTHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHhhcc
Confidence 9999999999988764
No 173
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.62 E-value=2.1e-09 Score=65.72 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=29.2
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
.+|+++|+||+|+..........+.+. ..+...+++++++||++|+|+++++++|.+.+
T Consensus 144 ~~pvi~V~nK~D~~~~~e~~~~~~~i~-~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 144 KVNIIPLIAKADTLTPEECQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp TSCEEEEESSGGGSCHHHHHHHHHHHH-HHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred cCCEEEEEeccCCCCHHHHHHHHHHHH-HHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 689999999999863222222111111 01113456789999999999999999998875
No 174
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.60 E-value=2.9e-08 Score=63.68 Aligned_cols=83 Identities=19% Similarity=0.121 Sum_probs=48.3
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCc-EEEEeeCCCCCCCCC-----HHHHHHhhccCCcCCCceEEEeeccccCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIP-ILVLGNKRDLPNALD-----EKELIDRMNLCAIQDREICCYSISCKERD 74 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 74 (92)
|+|+++.... ...+.+..+.. .++| +++++||+|+.+... .+++.+.+..........+++++||++|.
T Consensus 96 Vvda~~g~~~-qt~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~ 170 (397)
T 1d2e_A 96 VVAANDGPMP-QTREHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCAL 170 (397)
T ss_dssp EEETTTCSCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHH
T ss_pred EEECCCCCCH-HHHHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcc
Confidence 4677763222 22233333322 2578 689999999974211 11233332211111224689999999977
Q ss_pred C----------HHHHHHHHHHhhh
Q psy2977 75 N----------IDITLQWLIAHSK 88 (92)
Q Consensus 75 g----------i~~~~~~l~~~i~ 88 (92)
| +++++++|.+.+.
T Consensus 171 n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 171 EQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cccCCCccCCcHHHHHHHHHHhCC
Confidence 4 8999999988764
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.60 E-value=8.6e-08 Score=55.89 Aligned_cols=59 Identities=17% Similarity=0.089 Sum_probs=40.2
Q ss_pred CCcEEEEeeCCCCCCCCC----HHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 28 GIPILVLGNKRDLPNALD----EKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
+.|.++++||+|+..... ...+...+.. ....+.++++||+++.|+++++++|.+.+.+
T Consensus 137 ~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 137 NIAVLVLLTKADKLASGARKAQLNMVREAVLA---FNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCeEEEEecccCCCchhHHHHHHHHHHHHHh---cCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 579999999999863211 1122222210 1224678999999999999999999987654
No 176
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.56 E-value=1.1e-07 Score=61.79 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=32.9
Q ss_pred CCc-EEEEeeCCCCCCCC-C---HHHHHH----hhccCCcC-CCceEEEeeccccCCCHHHHHH
Q psy2977 28 GIP-ILVLGNKRDLPNAL-D---EKELID----RMNLCAIQ-DREICCYSISCKERDNIDITLQ 81 (92)
Q Consensus 28 ~~p-~ilv~NK~Dl~~~~-~---~~~~~~----~~~~~~~~-~~~~~~~~~SA~~~~gi~~~~~ 81 (92)
++| +++++||+|++... + .+++.+ .+...... ...++++++||++|.|++++++
T Consensus 154 ~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 154 GVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 456 89999999996421 1 122222 21111111 1246899999999999999544
No 177
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.56 E-value=6.3e-08 Score=55.72 Aligned_cols=53 Identities=30% Similarity=0.369 Sum_probs=40.1
Q ss_pred CeeCC-chhhHHHHHHHHHHhhcCC---CCCCCcEEEEeeCCCCCCCCCHHHHHHhh
Q psy2977 1 MVDAA-DTDKLEASRNELHALIEKP---QLIGIPILVLGNKRDLPNALDEKELIDRM 53 (92)
Q Consensus 1 v~D~s-~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~ 53 (92)
|+|++ +++++.....|+..++... ...+.|+++|+||+|+.+....+++.+.+
T Consensus 125 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 125 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred EEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 57999 8889988888888876532 12468999999999998766666655544
No 178
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.54 E-value=5.5e-08 Score=69.48 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=49.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCc-EEEEeeCCCCCCCCCH-----HHHHHhhccCCcCCCceEEEeeccccC-
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIP-ILVLGNKRDLPNALDE-----KELIDRMNLCAIQDREICCYSISCKER- 73 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~SA~~~- 73 (92)
|||+++... ....+++..+.. .++| +++++||+|+.+.... +++.+.+.........++++++||++|
T Consensus 389 VVDAtdGv~-~QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ 463 (1289)
T 3avx_A 389 VVAATDGPM-PQTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL 463 (1289)
T ss_dssp EEETTTCSC-TTHHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTT
T ss_pred EEcCCccCc-HHHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCC
Confidence 567776422 223344433322 2577 7899999999752111 123333221111123468999999999
Q ss_pred -------CCHHHHHHHHHHhhh
Q psy2977 74 -------DNIDITLQWLIAHSK 88 (92)
Q Consensus 74 -------~gi~~~~~~l~~~i~ 88 (92)
.||++++++|.+.+.
T Consensus 464 ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 464 EGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TCCHHHHHHHHHHHHHHHHTSC
T ss_pred CCCccccccchhhHhHHhhhcC
Confidence 579999999988664
No 179
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.54 E-value=1.5e-07 Score=60.96 Aligned_cols=75 Identities=19% Similarity=0.047 Sum_probs=40.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCC--H----HHHHHhhccCCcCCCceEEEeeccccCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD--E----KELIDRMNLCAIQDREICCYSISCKERD 74 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 74 (92)
|+|+++... ....+++..+... .-.|+++|+||+|+.+... . +++.+.+.........++++++||++|.
T Consensus 134 VvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~ 209 (434)
T 1zun_B 134 LVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGD 209 (434)
T ss_dssp EEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCT
T ss_pred EEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCC
Confidence 567776432 2233344333221 2236999999999975211 1 1122221111000124789999999999
Q ss_pred CHHHH
Q psy2977 75 NIDIT 79 (92)
Q Consensus 75 gi~~~ 79 (92)
|++++
T Consensus 210 gi~~~ 214 (434)
T 1zun_B 210 NVVNK 214 (434)
T ss_dssp TTSSC
T ss_pred Ccccc
Confidence 99874
No 180
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.49 E-value=1.3e-07 Score=59.56 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=40.1
Q ss_pred CCcEEEEeeCCCCCCCCCHH----HHHHhhccCCc--CCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 28 GIPILVLGNKRDLPNALDEK----ELIDRMNLCAI--QDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
+.|.++|+||+|+.+..... ++.+.++.... .....+++++||++|.|+++++++|.+.+.
T Consensus 194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 194 EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 46889999999996431222 23322221110 111346899999999999999999988664
No 181
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.49 E-value=9e-08 Score=62.78 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=31.2
Q ss_pred CcEEEEeeCCCCCCCC--CHHHHHHhhc----cCCcCCCceEEEeeccccCCCHHH
Q psy2977 29 IPILVLGNKRDLPNAL--DEKELIDRMN----LCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
.|+++|+||+|+.+.. ..+++.+.+. .........+++++||++|.||++
T Consensus 172 ~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 172 HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred CcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 5799999999997521 1122222211 001111257899999999999985
No 182
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.49 E-value=8e-08 Score=58.06 Aligned_cols=85 Identities=11% Similarity=0.115 Sum_probs=47.4
Q ss_pred CeeCCchhhHH-HHHHHHHHhhcCCCCCCCcEEEEee-CCCCCCCCCHHH---------HHHhhccCCcCCCc--eEEEe
Q psy2977 1 MVDAADTDKLE-ASRNELHALIEKPQLIGIPILVLGN-KRDLPNALDEKE---------LIDRMNLCAIQDRE--ICCYS 67 (92)
Q Consensus 1 v~D~s~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~N-K~Dl~~~~~~~~---------~~~~~~~~~~~~~~--~~~~~ 67 (92)
|+|+++..... .+..++.++... . ...|.++++| |+|+... .... +....... .... +..++
T Consensus 112 V~d~~~~~~~~~~~~~~l~~~~~~-~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~ 186 (260)
T 2xtp_A 112 VTQLGRYTSQDQQAAQRVKEIFGE-D-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC--GGRICAFNNRA 186 (260)
T ss_dssp EEETTCCCHHHHHHHHHHHHHHCG-G-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT--TTCEEECCTTC
T ss_pred EEeCCCCCHHHHHHHHHHHHHhCc-h-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh--CCeEEEecCcc
Confidence 46777533222 223445544321 1 1356666666 9999743 3322 11111111 1111 11278
Q ss_pred eccccCCCHHHHHHHHHHhhhhc
Q psy2977 68 ISCKERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 68 ~SA~~~~gi~~~~~~l~~~i~~~ 90 (92)
+||++|.|++++|++|.+.+...
T Consensus 187 ~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 187 EGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999988754
No 183
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.47 E-value=1.3e-07 Score=63.46 Aligned_cols=60 Identities=23% Similarity=0.181 Sum_probs=38.3
Q ss_pred CCc-EEEEeeCCCCCCCCC--H----HHHHHhh-ccCCcCCCceEEEeeccccCCCHH--------------HHHHHHHH
Q psy2977 28 GIP-ILVLGNKRDLPNALD--E----KELIDRM-NLCAIQDREICCYSISCKERDNID--------------ITLQWLIA 85 (92)
Q Consensus 28 ~~p-~ilv~NK~Dl~~~~~--~----~~~~~~~-~~~~~~~~~~~~~~~SA~~~~gi~--------------~~~~~l~~ 85 (92)
++| +++|+||+|+.+... . .++...+ .........++++++||++|.||. .+++.|..
T Consensus 314 gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~ 393 (592)
T 3mca_A 314 GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQ 393 (592)
T ss_dssp SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHT
T ss_pred CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHh
Confidence 355 899999999974211 1 2233332 111111235689999999999998 68888776
Q ss_pred hh
Q psy2977 86 HS 87 (92)
Q Consensus 86 ~i 87 (92)
.+
T Consensus 394 ~~ 395 (592)
T 3mca_A 394 LV 395 (592)
T ss_dssp SC
T ss_pred hc
Confidence 54
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.39 E-value=3.4e-07 Score=62.47 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=50.9
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCC--CHH----------HHHH----hhccC-C---cCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL--DEK----------ELID----RMNLC-A---IQD 60 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~----------~~~~----~~~~~-~---~~~ 60 (92)
|+|++++.+......|. +.+.. .+.|+++|+||+|+.... +.+ .+.. .+... . ...
T Consensus 207 Vvda~~~~s~~e~~~l~-~~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~ 282 (695)
T 2j69_A 207 VMRASQPCTLGERRYLE-NYIKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNI 282 (695)
T ss_dssp EEETTSTTCHHHHHHHH-HHTTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBC
T ss_pred EEeCCCccchhHHHHHH-HHHHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 56877765555443333 33322 257899999999985321 111 1211 11100 0 001
Q ss_pred CceEEEeeccc--------------cCCCHHHHHHHHHHhhhh
Q psy2977 61 REICCYSISCK--------------ERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 61 ~~~~~~~~SA~--------------~~~gi~~~~~~l~~~i~~ 89 (92)
...++++|||+ +|.|+++++.+|.+.+..
T Consensus 283 ~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 283 YDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp GGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 23468999999 999999999999987753
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.37 E-value=9.6e-07 Score=60.05 Aligned_cols=26 Identities=8% Similarity=-0.097 Sum_probs=23.8
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.+++.+||++|.||+++|++|.+.+.
T Consensus 248 ~pv~~~SA~~~~Gv~~Ll~~i~~~lp 273 (665)
T 2dy1_A 248 YPVALASGEREIGVLPLLELILEALP 273 (665)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCC
Confidence 57999999999999999999998774
No 186
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.37 E-value=1e-07 Score=60.21 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=38.4
Q ss_pred CCCcEEEEeeCCCCCCCCC-HHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHH
Q psy2977 27 IGIPILVLGNKRDLPNALD-EKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIA 85 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~ 85 (92)
.+.|+++|+||+|+.+... ...+.+. ....+......++.+||++|.|++++++++.+
T Consensus 196 ~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 196 QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp TCTTEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred CCCceEEEeccccccCcchhHHHHHhC-CcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 4689999999999975322 1222211 11111112246889999999999999999876
No 187
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.36 E-value=4.3e-07 Score=57.45 Aligned_cols=61 Identities=16% Similarity=0.092 Sum_probs=39.0
Q ss_pred CCcEEEEeeCCCCCCCCC----HHHHHHhhccCCc--CCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 28 GIPILVLGNKRDLPNALD----EKELIDRMNLCAI--QDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
+.|.++|+||+|+.+... ...+...+..... .....+++.+||++|+|+++++++|.+.+.
T Consensus 212 ~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 212 EMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 468899999999863111 1122222221100 012346899999999999999999988753
No 188
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.34 E-value=4.6e-08 Score=63.97 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=33.0
Q ss_pred CCc-EEEEeeCCCCCCCC-CHH-------HHHHhhccC-CcC-CCceEEEeeccccCCCHHHHH
Q psy2977 28 GIP-ILVLGNKRDLPNAL-DEK-------ELIDRMNLC-AIQ-DREICCYSISCKERDNIDITL 80 (92)
Q Consensus 28 ~~p-~ilv~NK~Dl~~~~-~~~-------~~~~~~~~~-~~~-~~~~~~~~~SA~~~~gi~~~~ 80 (92)
++| +++++||+|++... +.+ ++.+.+... .+. ...++++++||++|.|+++++
T Consensus 180 ~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 180 GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 566 99999999996421 221 223222110 111 125789999999999998754
No 189
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.32 E-value=7.1e-08 Score=64.99 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=31.4
Q ss_pred CcEEEEeeCCCCCCCC--CHHHHHHhh----ccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 29 IPILVLGNKRDLPNAL--DEKELIDRM----NLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
.|+++|+||+|+.+.. ..+++...+ ..........++++|||++|.||+++
T Consensus 306 ~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 306 HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred CeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 4699999999997521 112222221 10011112468999999999999865
No 190
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.29 E-value=1.4e-06 Score=57.92 Aligned_cols=26 Identities=12% Similarity=0.029 Sum_probs=23.2
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.+++..||++|.||+++++.+.+.+.
T Consensus 252 ~Pv~~gSA~~~~Gv~~LLd~i~~~~P 277 (529)
T 2h5e_A 252 TPVFFGTALGNFGVDHMLDGLVEWAP 277 (529)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eEEEeeecccCCCHHHHHHHHHHhCC
Confidence 47889999999999999999998764
No 191
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.27 E-value=4.8e-07 Score=62.37 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=38.9
Q ss_pred CCCcEEEEeeCCCCCCCCC-HHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHh
Q psy2977 27 IGIPILVLGNKRDLPNALD-EKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAH 86 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~ 86 (92)
.+.|+++|+||+|+.+... ...+... ....+......++.+||++|.|++++++.+.+.
T Consensus 216 ~g~pvIlVlNKiDlv~~~~~~~~il~~-~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 216 QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp TCSSEEEEEECTTSSCTTCCSHHHHTT-CSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred cCCCEEEEEeCcccCCcchhhHHHHHH-HhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 3689999999999974322 1222221 111111123468899999999999999998873
No 192
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.24 E-value=5.5e-08 Score=60.40 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=31.2
Q ss_pred CCcEEEEeeCCCCCCCCCH----HHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 28 GIPILVLGNKRDLPNALDE----KELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
..|+++|+||.|+...... +++.+.+ ...++.++++||++| |++++|.++.+.+.+
T Consensus 155 ~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 155 KVNIVPVIAKADTLTLKERERLKKRILDEI-----EEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp TSCEEEEECCGGGSCHHHHHHHHHHHHHHH-----HHTTCCCCCCC----------CHHHHHHHHT
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHHHHHH-----HHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 5799999999998632111 1222221 223567899999999 999999999988754
No 193
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.23 E-value=3.3e-07 Score=59.85 Aligned_cols=52 Identities=19% Similarity=0.132 Sum_probs=30.4
Q ss_pred CCc-EEEEeeCCCCCCCCC--HHH----HHHhhccCCcCCCceEEEeeccccCCCHHHH
Q psy2977 28 GIP-ILVLGNKRDLPNALD--EKE----LIDRMNLCAIQDREICCYSISCKERDNIDIT 79 (92)
Q Consensus 28 ~~p-~ilv~NK~Dl~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~ 79 (92)
++| +++++||+|+.+... .++ +.+.+.........++++++||++|.|+.++
T Consensus 144 ~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 144 GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 455 899999999973211 112 2222111111111367999999999999743
No 194
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.23 E-value=1.1e-05 Score=55.17 Aligned_cols=26 Identities=8% Similarity=0.057 Sum_probs=23.6
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.+++..||++|.|++.+++.+.+.+.
T Consensus 256 ~Pv~~gSA~~~~Gv~~LLd~i~~~lP 281 (691)
T 1dar_A 256 TPVFLGSALKNKGVQLLLDAVVDYLP 281 (691)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCC
Confidence 57899999999999999999999874
No 195
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.20 E-value=3e-07 Score=56.10 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=36.4
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAH 86 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~ 86 (92)
++|.++|+||+||.+....+...+.+. ..+.++ .+||++|.|++++++++...
T Consensus 46 ~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKTTKKWVEFFK-----KQGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TSEEEEEEECGGGSCHHHHHHHHHHHH-----HTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred CCCcEEEEECccCCCHHHHHHHHHHHH-----HcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 689999999999974211122233321 123456 99999999999999887553
No 196
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.17 E-value=2.3e-06 Score=52.86 Aligned_cols=61 Identities=20% Similarity=0.078 Sum_probs=38.3
Q ss_pred CCCcEEEEeeCCCCCCCCC--HHHHHHhhccCCcCCCceEEEeecccc---CCCHHHHHHHHHHhhhh
Q psy2977 27 IGIPILVLGNKRDLPNALD--EKELIDRMNLCAIQDREICCYSISCKE---RDNIDITLQWLIAHSKS 89 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~---~~gi~~~~~~l~~~i~~ 89 (92)
.+.|+++|+||+|+..... .+.+...+ .......+++..+||.+ +.|+.++++++.+.+..
T Consensus 197 ~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 197 EGKRTIGVITKLDLMDKGTDAMEVLTGRV--IPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp SCSSEEEEEECTTSSCSSCCCHHHHTTSS--SCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCcccCCcchHHHHHHhCCC--ccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 3689999999999975332 22221110 11101223456677777 89999999998887754
No 197
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.14 E-value=1.9e-07 Score=58.28 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=35.3
Q ss_pred CCCcEEEEeeCCCCCCCCC----HHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHH
Q psy2977 27 IGIPILVLGNKRDLPNALD----EKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWL 83 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l 83 (92)
.++|.+||+||+||.+... .+.+.+.+. ..+++++.+||.+|.|+++++..+
T Consensus 116 ~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~-----~~g~~v~~~sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 116 NDIQPIICITKMDLIEDQDTEDTIQAYAEDYR-----NIGYDVYLTSSKDQDSLADIIPHF 171 (307)
T ss_dssp TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH-----HHTCCEEECCHHHHTTCTTTGGGG
T ss_pred CCCCEEEEEECCccCchhhhHHHHHHHHHHHH-----hCCCeEEEEecCCCCCHHHHHhhc
Confidence 4689999999999975322 122333221 123578999999999998876644
No 198
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.06 E-value=1.6e-06 Score=52.35 Aligned_cols=85 Identities=8% Similarity=0.200 Sum_probs=47.4
Q ss_pred CeeCCchhhHH-HHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHH---------HHhhccCCcCCCceEEEeecc
Q psy2977 1 MVDAADTDKLE-ASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL---------IDRMNLCAIQDREICCYSISC 70 (92)
Q Consensus 1 v~D~s~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~SA 70 (92)
|+|+++..... ....++.++.. ....+.|+++++||+|+.+. +.++. ...... ....+.+|..++
T Consensus 112 V~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~iilv~nK~Dl~~~-~~~~~l~~~~~~~l~~l~~~---~g~~~~~~~~~~ 186 (247)
T 3lxw_A 112 VTQLGRFTAQDQQAVRQVRDMFG-EDVLKWMVIVFTRKEDLAGG-SLHDYVSNTENRALRELVAE---CGGRVCAFDNRA 186 (247)
T ss_dssp EEETTBCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH---TTTCEEECCTTC
T ss_pred EEeCCCCCHHHHHHHHHHHHHhC-hhhhccEEEEEEchHhcCCC-CHHHHHhhcccHHHHHHHHH---cCCeEEEEeCCC
Confidence 46776432222 22344444432 22346899999999999753 22221 111110 122334444444
Q ss_pred c---cCCCHHHHHHHHHHhhhhc
Q psy2977 71 K---ERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 71 ~---~~~gi~~~~~~l~~~i~~~ 90 (92)
. ++.||+++++.+.+.+.++
T Consensus 187 ~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 187 TGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHHHHHHHHHc
Confidence 3 3789999999999988754
No 199
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.06 E-value=2.8e-06 Score=54.03 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=35.1
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHH
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWL 83 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l 83 (92)
++|.+||+||+||.+....+.+.+.... ....+++++.+||.+|.|++++...+
T Consensus 160 ~~~~iivlNK~DL~~~~~~~~~~~~~~~--y~~~G~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 160 QVEPLIVLNKIDLLDDEGMDFVNEQMDI--YRNIGYRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp TCEEEEEEECGGGCCHHHHHHHHHHHHH--HHTTTCCEEECBTTTTBTHHHHHHHH
T ss_pred CCCEEEEEECccCCCchhHHHHHHHHHH--HHhCCCcEEEEecCCCcCHHHHHHhc
Confidence 5788999999999743211112221111 11234678999999999999987754
No 200
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.98 E-value=7.2e-05 Score=51.22 Aligned_cols=26 Identities=8% Similarity=0.015 Sum_probs=23.5
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.+++..||++|.|++.+++.+.+.+.
T Consensus 254 ~Pv~~gSA~~~~Gv~~LLd~i~~~lP 279 (693)
T 2xex_A 254 YPVLCGTAFKNKGVQLMLDAVIDYLP 279 (693)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eeEEEeecccCcCHHHHHHHHHHHCC
Confidence 46899999999999999999998874
No 201
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.89 E-value=8.8e-05 Score=50.89 Aligned_cols=26 Identities=15% Similarity=0.034 Sum_probs=23.3
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.+++..||++|.|++.+++.+.+.+.
T Consensus 262 ~Pv~~gSa~~~~Gv~~LLd~i~~~lP 287 (704)
T 2rdo_7 262 ILVTCGSAFKNKGVQAMLDAVIDYLP 287 (704)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCC
Confidence 46889999999999999999998874
No 202
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.89 E-value=6.6e-05 Score=50.15 Aligned_cols=26 Identities=8% Similarity=0.011 Sum_probs=23.4
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.+++..||+++.||+.+++.+.+.+.
T Consensus 269 ~PV~~gSA~~~~Gv~~LLd~iv~~~P 294 (548)
T 3vqt_A 269 TPVFFGSAINNFGVREMLDMFVEFAP 294 (548)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred ceeeecccccCcCHHHHHHHHHHhCC
Confidence 57888999999999999999998874
No 203
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.80 E-value=4.1e-05 Score=48.21 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=37.4
Q ss_pred CcEEEEeeCCCCCCCCC-----HHHHHHhhccCCcC--CCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 29 IPILVLGNKRDLPNALD-----EKELIDRMNLCAIQ--DREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.|.++++||+|+..... .+.+...+.+.... ....+++.+||++|.|+++++++|.+...
T Consensus 194 ~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 194 LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 46688889999743211 12222222211100 11246888999999999999999988654
No 204
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.80 E-value=4.8e-06 Score=49.67 Aligned_cols=58 Identities=9% Similarity=0.034 Sum_probs=32.8
Q ss_pred CCcEEEEeeCCCCCCCCCHH--------HHHHhhccCCcCCCceEEEeeccc-----cCCCHHHHHHHHHHhhhhc
Q psy2977 28 GIPILVLGNKRDLPNALDEK--------ELIDRMNLCAIQDREICCYSISCK-----ERDNIDITLQWLIAHSKSH 90 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~SA~-----~~~gi~~~~~~l~~~i~~~ 90 (92)
..|+++|+||+|+......+ .+.+... ..+..++.+++. ++.|+.++|..+.+.+.++
T Consensus 145 ~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~-----~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 145 RSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD-----IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp GGGEEEEEECGGGC------------CHHHHHHHH-----HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH-----HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 36999999999986432222 1222111 111224444443 4479999999998888654
No 205
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.74 E-value=4.3e-06 Score=54.18 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=27.1
Q ss_pred HHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHH---hhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhh
Q psy2977 15 NELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID---RMNLCAIQDREICCYSISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 15 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i 87 (92)
.|+..+. .++|+++|+||+|+.. ..++.. ... ..+...++.++++||+++.|++++|..+...+
T Consensus 159 ~~lk~L~-----~~v~iIlVinK~Dll~---~~ev~~~k~~i~-~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 159 EFMKRLH-----EKVNIIPLIAKADTLT---PEECQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHT-----TTSEEEEEEESTTSSC---HHHHHHHHHHHH-HHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHh-----ccCcEEEEEEcccCcc---HHHHHHHHHHHH-HHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 4565552 2689999999999863 222221 110 01112356789999999999999988887654
No 206
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.48 E-value=8.1e-06 Score=51.63 Aligned_cols=54 Identities=11% Similarity=0.080 Sum_probs=34.9
Q ss_pred CCCcEEEEeeCCCCCCCCC-HHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHH
Q psy2977 27 IGIPILVLGNKRDLPNALD-EKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~ 84 (92)
.+.|+++|+||+|+.+... ..++.+.. ....+..++++|++++.|+++.+.+..
T Consensus 202 ~~~~~i~V~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 202 SGDRTFGVLTKIDLMDKGTDAVEILEGR----SFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp TCTTEEEEEECGGGCCTTCCSHHHHTTS----SSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred cCCCEEEEEeCCccCCCcccHHHHHcCc----cccccCCeEEEEECChHHhccCCCHHH
Confidence 4679999999999864322 11222211 122346689999999999887765543
No 207
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.36 E-value=0.00049 Score=46.77 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=22.5
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.+++..||+++.||+.+++.+.+.+.
T Consensus 213 ~Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 213 FPLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp CCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred ccccccccccCCCchhHhhhhhcccc
Confidence 45778899999999999999988764
No 208
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.14 E-value=1.5e-05 Score=51.36 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=31.8
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHH
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQ 81 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~ 81 (92)
.+|+++|+||+|+........+.+.+. ..+..++++||+.+.|+.++++
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~-----~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEE-----KRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHH-----HTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHh-----hcCCcEEEEeccchhhHHHHHh
Confidence 489999999999862111122222221 1135789999999999987543
No 209
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.84 E-value=0.0069 Score=41.67 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=22.8
Q ss_pred eEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 63 ICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 63 ~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
.+++..||.++.|+..+++.+.+.+.
T Consensus 265 ~pv~~gsa~~~~gv~~lLd~i~~~lP 290 (709)
T 4fn5_A 265 VPAVCGSSFKNKGVPLVLDAVIDYLP 290 (709)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHSC
T ss_pred eeeeeeecccCCchHHHHHHHHhhCC
Confidence 46788899999999999999998874
No 210
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.13 E-value=0.0018 Score=43.32 Aligned_cols=38 Identities=24% Similarity=0.180 Sum_probs=25.0
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 42 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 42 (92)
|+|+++.........++..+.. .+.|+++|+||+|+..
T Consensus 195 VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 195 LFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADMVE 232 (550)
T ss_dssp EEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGGSC
T ss_pred EEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCccC
Confidence 4677764444444455555432 3579999999999974
No 211
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.033 Score=35.73 Aligned_cols=52 Identities=23% Similarity=0.068 Sum_probs=38.1
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
...|.++++||+|.. +.+++..... ...++++|+..+.|++.+.+.+.+.+.
T Consensus 248 ~~~p~i~v~nKid~~---~~eele~l~~-------~~~~~~is~~~e~gLd~Li~~~y~~L~ 299 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSL---SIEELELLYR-------IPNAVPISSGQDWNLDELLQVMWDRLN 299 (376)
T ss_dssp EEECEEEEEECGGGS---CHHHHHHHTT-------STTEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred hccceEEEEeccccc---CHHHHHHHhc-------ccchhhhhhhhcccchhHHHHHHHHcC
Confidence 357999999999975 4444443221 123688999999999999998887763
No 212
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.88 E-value=0.0085 Score=38.28 Aligned_cols=47 Identities=9% Similarity=0.161 Sum_probs=27.5
Q ss_pred CCCcEEEEeeCCCC--CCC--C-CHHHHHHhhccCCcCCCceEEEeeccccCCCHHH
Q psy2977 27 IGIPILVLGNKRDL--PNA--L-DEKELIDRMNLCAIQDREICCYSISCKERDNIDI 78 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl--~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 78 (92)
..+|+++++||.|. .+. . ..+.+.+... ..+.+++++||+++.++.+
T Consensus 200 t~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~-----~~g~~vv~iSAk~E~el~e 251 (368)
T 2dby_A 200 TAKPVIYVANVAEEDLPDGRGNPQVEAVRRKAL-----EEGAEVVVVSARLEAELAE 251 (368)
T ss_dssp GGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHH-----HHTCEEEEECHHHHHHHHT
T ss_pred hcCCeEEeccccHHhhcccchhhHHHHHHHHHH-----HcCCeEEEeechhHHHHHH
Confidence 45899999999974 221 1 1223333221 1236789999998444443
No 213
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.96 E-value=0.074 Score=34.00 Aligned_cols=57 Identities=7% Similarity=-0.014 Sum_probs=35.5
Q ss_pred CCCCcEEEEeeCCCCCCCCC--HHHHHHhhccCCcCCCceEEEeecccc----------------------CCCHHHHHH
Q psy2977 26 LIGIPILVLGNKRDLPNALD--EKELIDRMNLCAIQDREICCYSISCKE----------------------RDNIDITLQ 81 (92)
Q Consensus 26 ~~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~----------------------~~gi~~~~~ 81 (92)
...+|+++++||.|.....+ ...+.+... ..+..++++||+. ..|++.+..
T Consensus 197 lt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~-----~~~~~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~ 271 (363)
T 1jal_A 197 LTLKPTMYIANVNEDGFENNPYLDRVREIAA-----KEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIR 271 (363)
T ss_dssp STTSCEEEEEECCTTCSSSCHHHHHHHHHHH-----HTTCEEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHH
T ss_pred ccCCcEEEEEecccccccccHHHHHHHHHHH-----HcCCCEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHH
Confidence 34699999999999642111 223333221 1245788999764 368888887
Q ss_pred HHHHhh
Q psy2977 82 WLIAHS 87 (92)
Q Consensus 82 ~l~~~i 87 (92)
...+.+
T Consensus 272 ~~~~~L 277 (363)
T 1jal_A 272 AGYALL 277 (363)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 766654
No 214
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.66 E-value=0.023 Score=34.37 Aligned_cols=14 Identities=7% Similarity=-0.014 Sum_probs=12.5
Q ss_pred CcEEEEeeCCCCCC
Q psy2977 29 IPILVLGNKRDLPN 42 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~ 42 (92)
.|+++|+||+|+.+
T Consensus 155 ~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 155 NKAIVALTHAQFSP 168 (270)
T ss_dssp GGEEEEEECCSCCC
T ss_pred cCEEEEEECcccCC
Confidence 69999999999964
No 215
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.66 E-value=0.017 Score=34.82 Aligned_cols=13 Identities=8% Similarity=0.123 Sum_probs=11.7
Q ss_pred CcEEEEeeCCCCC
Q psy2977 29 IPILVLGNKRDLP 41 (92)
Q Consensus 29 ~p~ilv~NK~Dl~ 41 (92)
.|+++|+||+|+.
T Consensus 152 ~~~ivv~nK~Dl~ 164 (262)
T 3def_A 152 CKTLLVLTHAQFS 164 (262)
T ss_dssp GGEEEEEECTTCC
T ss_pred cCEEEEEeCcccC
Confidence 5999999999995
No 216
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=93.68 E-value=0.031 Score=39.33 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=24.7
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCC
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 41 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 41 (92)
|+|+++...+.....|. .... .++|+++++||+|+.
T Consensus 128 VvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 128 VVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHHHH
T ss_pred EEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCCcc
Confidence 57888776665543333 3332 358999999999986
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.77 E-value=0.059 Score=34.99 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=38.9
Q ss_pred CCcEEEEeeCCCCC---------CCCCHHHHHHhhccCC-----cC-CCceEEEeecc--ccCCCHHHHHHHHHHhhhh
Q psy2977 28 GIPILVLGNKRDLP---------NALDEKELIDRMNLCA-----IQ-DREICCYSISC--KERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~---------~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~SA--~~~~gi~~~~~~l~~~i~~ 89 (92)
+.|+++|.||.|+. +.....++.+.+.... .. .....++.+|+ .++.|++++.+.+.+.+..
T Consensus 175 ~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 175 KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 57999999999863 1223333333221110 00 01235788999 6777899999999988754
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.76 E-value=0.28 Score=32.70 Aligned_cols=58 Identities=14% Similarity=-0.103 Sum_probs=34.7
Q ss_pred CcE-EEEeeCCCCCCCCCH-HHHHHhhccCC--------cCC--CceEEEeeccccCCC-HHHHHHHHHHh
Q psy2977 29 IPI-LVLGNKRDLPNALDE-KELIDRMNLCA--------IQD--REICCYSISCKERDN-IDITLQWLIAH 86 (92)
Q Consensus 29 ~p~-ilv~NK~Dl~~~~~~-~~~~~~~~~~~--------~~~--~~~~~~~~SA~~~~g-i~~~~~~l~~~ 86 (92)
+|+ .+|+||.|....... -.+...++..- ... ...+.+.+||.+|.| ++++++++.+.
T Consensus 240 ~~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 240 VDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HCCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cCceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 464 899999998643221 12333332210 000 011235589999999 99999999865
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=86.48 E-value=3 Score=26.91 Aligned_cols=58 Identities=7% Similarity=-0.056 Sum_probs=37.7
Q ss_pred CCCcEEEEeeCCCC--C-C-CCCHHHHHHhhccCCcCCCceEEEeecccc---------------------CCCHHHHHH
Q psy2977 27 IGIPILVLGNKRDL--P-N-ALDEKELIDRMNLCAIQDREICCYSISCKE---------------------RDNIDITLQ 81 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~---------------------~~gi~~~~~ 81 (92)
..+|+++++|+.|- . + ..-...+.+.... ...+..++++||+. +.|++.+..
T Consensus 223 t~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~---~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~ 299 (392)
T 1ni3_A 223 TAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDE---NSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIV 299 (392)
T ss_dssp GGSCEEEEEECCHHHHTTTCCSSHHHHHHHHHT---TSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHH
T ss_pred ccCceEEEEEecchhhcccchHHHHHHHHHHHh---cCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHH
Confidence 46899999999983 2 1 1123444443321 11125689999986 688999888
Q ss_pred HHHHhh
Q psy2977 82 WLIAHS 87 (92)
Q Consensus 82 ~l~~~i 87 (92)
...+.+
T Consensus 300 ~~~~~L 305 (392)
T 1ni3_A 300 TGYNAL 305 (392)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 877655
No 220
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=77.81 E-value=1.4 Score=28.35 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=22.9
Q ss_pred CeeCCchhh-HHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCC
Q psy2977 1 MVDAADTDK-LEASRNELHALIEKPQLIGIPILVLGNKRDLP 41 (92)
Q Consensus 1 v~D~s~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 41 (92)
|+|+++|-. ++....++.... ..+...|.++++||+|..
T Consensus 156 vvD~~~p~~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 156 ILDVNKPLHHKQIIEKELEGVG--IRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEETTSHHHHHHHHHHHHHHTT--EEETCCCCCEEEEECSSS
T ss_pred ccccCccHHHHHHHHHHHHHhh--HhhccCChhhhhhHhhhh
Confidence 578887632 222223343322 223567889999999963
No 221
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=74.09 E-value=0.37 Score=31.53 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=13.4
Q ss_pred CCCcEEEEeeCCCCCC
Q psy2977 27 IGIPILVLGNKRDLPN 42 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~ 42 (92)
..+|+|+|.||+|...
T Consensus 175 ~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 175 SKVNIIPIIAKADAIS 190 (427)
T ss_dssp SCSEEEEEESCGGGSC
T ss_pred hCCCEEEEEcchhccc
Confidence 3689999999999763
No 222
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=73.95 E-value=1.9 Score=19.86 Aligned_cols=20 Identities=15% Similarity=0.301 Sum_probs=15.8
Q ss_pred eccccCCCHHHHHHHHHHhh
Q psy2977 68 ISCKERDNIDITLQWLIAHS 87 (92)
Q Consensus 68 ~SA~~~~gi~~~~~~l~~~i 87 (92)
++...+.||+.+++||.+.-
T Consensus 30 lk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 30 LKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHTSCCHHHHHHHHHHHS
T ss_pred HHHhCcccHHHHHHHHHHhc
Confidence 44556789999999998764
No 223
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=73.92 E-value=2.1 Score=20.30 Aligned_cols=18 Identities=44% Similarity=0.697 Sum_probs=15.3
Q ss_pred ccCCCHHHHHHHHHHhhh
Q psy2977 71 KERDNIDITLQWLIAHSK 88 (92)
Q Consensus 71 ~~~~gi~~~~~~l~~~i~ 88 (92)
.+|.||+.+.+||..+.-
T Consensus 42 at~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 42 KKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HHCSCHHHHHHHHHHHSC
T ss_pred HcCCCHHHHHHHHHhCCC
Confidence 489999999999987653
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=65.68 E-value=9.9 Score=25.03 Aligned_cols=12 Identities=17% Similarity=-0.119 Sum_probs=9.8
Q ss_pred cEEEEeeCCCCC
Q psy2977 30 PILVLGNKRDLP 41 (92)
Q Consensus 30 p~ilv~NK~Dl~ 41 (92)
+..+|+||.|..
T Consensus 241 i~gVIlTKlD~~ 252 (443)
T 3dm5_A 241 IGSIIVTKLDGS 252 (443)
T ss_dssp TEEEEEECCSSC
T ss_pred CeEEEEECCCCc
Confidence 457899999975
No 225
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=59.79 E-value=6.1 Score=24.80 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=35.9
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhh
Q psy2977 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSK 88 (92)
Q Consensus 28 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~ 88 (92)
..| .|+++|-|.++ +++.+... ..+++++.+++.+..++..+..||...+.
T Consensus 80 ~~P-~IIltrg~~~p----eelie~A~-----~~~IPVL~T~~~ts~~~~~l~~~l~~~~~ 130 (314)
T 1ko7_A 80 ETP-AIIVTRDLEPP----EELIEAAK-----EHETPLITSKIATTQLMSRLTTFLEHELA 130 (314)
T ss_dssp TCC-CEEECTTCCCC----HHHHHHHH-----HTTCCEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred CCC-EEEEeCCCCCC----HHHHHHHH-----HCCCeEEEECCchhHHHHHHHHHHHHhhc
Confidence 456 55678888762 23333322 23678999999999999999999988654
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=50.09 E-value=2.6 Score=27.53 Aligned_cols=56 Identities=11% Similarity=-0.168 Sum_probs=29.1
Q ss_pred EEEEeeCCCCCCCCC-HHHHHHhhccCC--------cC--CCceEEEeeccccCCC-HHHHHHHHHHh
Q psy2977 31 ILVLGNKRDLPNALD-EKELIDRMNLCA--------IQ--DREICCYSISCKERDN-IDITLQWLIAH 86 (92)
Q Consensus 31 ~ilv~NK~Dl~~~~~-~~~~~~~~~~~~--------~~--~~~~~~~~~SA~~~~g-i~~~~~~l~~~ 86 (92)
..+|+||.|...... .-.+....+..- .. ....+...+||..|.| +..+++.+.+.
T Consensus 241 ~gvVlnK~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~ 308 (432)
T 2v3c_C 241 GSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDM 308 (432)
T ss_dssp EEEEEECSSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSC
T ss_pred eEEEEeCCCCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 789999999753211 112233322110 00 0011234678888888 77766665443
No 227
>3fpr_A Evasin-1; novel fold, glycoprotein, secreted, immune system; 1.63A {Rhipicephalus sanguineus} PDB: 3fpt_A* 3fpu_A
Probab=42.95 E-value=20 Score=18.44 Aligned_cols=15 Identities=47% Similarity=0.576 Sum_probs=13.3
Q ss_pred CCCCcEEEEeeCCCC
Q psy2977 26 LIGIPILVLGNKRDL 40 (92)
Q Consensus 26 ~~~~p~ilv~NK~Dl 40 (92)
+.+.|+++++|+.-.
T Consensus 9 ~~gcpF~v~~N~Tg~ 23 (100)
T 3fpr_A 9 LGGCPFLVAENKTGY 23 (100)
T ss_dssp CCCCCEEEEECTTCC
T ss_pred cCCCceEEecCccCC
Confidence 467999999999987
No 228
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=41.46 E-value=48 Score=22.66 Aligned_cols=58 Identities=19% Similarity=0.076 Sum_probs=35.5
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHhhccCCcCCCceEEEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 27 IGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 27 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
-++|+++.+|+-.-. +..|+....... ...+..+..+=|+-|+|-.++-+.+.+.+.+
T Consensus 373 fGvpvVVaiN~F~tD---T~aEi~~v~~~~--~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~~ 430 (557)
T 3pzx_A 373 FGVPAVVAINAFPTD---TEAELNLLYELC--AKAGAEVALSWAKGGEGGLELARKVLQTLES 430 (557)
T ss_dssp TTCCEEEEEECCTTC---CHHHHHHHHHHC--CSSEEEEECHHHHGGGGGHHHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCC---CHHHHHHHHHHH--HHcCCCEEEEecccchhHHHHHHHHHHHHhc
Confidence 479999999986532 333432221111 2334554444567789988888888777653
No 229
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=39.45 E-value=38 Score=17.03 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=21.5
Q ss_pred CeeCCchhhHHHHHHHHHHhhcCCCCCCCcEEEEee
Q psy2977 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 36 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~N 36 (92)
||++++++.+..+......+++.. ++..+.++++
T Consensus 4 v~~v~d~~~~~~al~~~~n~~~~~--~~~~v~vv~~ 37 (108)
T 2pd2_A 4 VVQIKDFDKVPQALRSVINLYNDI--KDAEIEVVLH 37 (108)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHHS--TTCEEEEEEC
T ss_pred EEEeCChHHHHHHHHHHHHHHhhC--CCCeEEEEEc
Confidence 456678888877766666666531 2556666655
No 230
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=37.75 E-value=15 Score=17.95 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=20.7
Q ss_pred EEeeccccCCCHHHHHHHHHHhhhh
Q psy2977 65 CYSISCKERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 65 ~~~~SA~~~~gi~~~~~~l~~~i~~ 89 (92)
-+.+||-+.+.-.++++.+++.+.+
T Consensus 51 qitisaendeqakelleliarllqk 75 (96)
T 2jvf_A 51 QITISAENDEQAKELLELIARLLQK 75 (96)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecChHHHHHHHHHHHHHHHH
Confidence 3578999999899999988888765
No 231
>2pzz_A UPF0201 protein MJ1564; methanococcus jannaschii, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Methanocaldococcus jannaschii DSM2661} SCOP: d.77.1.2
Probab=37.69 E-value=22 Score=19.72 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=16.3
Q ss_pred EEeeccccCCCHHHHHHHHH
Q psy2977 65 CYSISCKERDNIDITLQWLI 84 (92)
Q Consensus 65 ~~~~SA~~~~gi~~~~~~l~ 84 (92)
.+.+++.+..+++++++||+
T Consensus 105 ~v~i~~~~~~~~~~~idwla 124 (147)
T 2pzz_A 105 FVKILADENEDIMKIIKDIA 124 (147)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHhC
Confidence 35666777779999999997
No 232
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.41 E-value=23 Score=16.60 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHHHhhh
Q psy2977 73 RDNIDITLQWLIAHSK 88 (92)
Q Consensus 73 ~~gi~~~~~~l~~~i~ 88 (92)
+.|++.+++||..+..
T Consensus 35 n~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 35 RKTAEEALAWLHDHCN 50 (64)
T ss_dssp SCCHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHhCCC
Confidence 4599999999998753
No 233
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=37.10 E-value=36 Score=17.86 Aligned_cols=38 Identities=11% Similarity=0.260 Sum_probs=18.0
Q ss_pred HHHhhcCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhc
Q psy2977 17 LHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRMN 54 (92)
Q Consensus 17 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~-~~~~~~~~~~~ 54 (92)
+.+++...+....|+++|=.++=+... .+.+++.+.++
T Consensus 64 V~~~L~~~G~~~LP~~~VDGevv~~G~yPt~eEl~~~lg 102 (106)
T 3ktb_A 64 VNDFLQKHGADALPITLVDGEIAVSQTYPTTKQMSEWTG 102 (106)
T ss_dssp HHHHHHTTCGGGCSEEEETTEEEECSSCCCHHHHHHHHC
T ss_pred HHHHHHHcCcccCCEEEECCEEEEeccCCCHHHHHHHhC
Confidence 334444334445666665544444332 24555555544
No 234
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=33.84 E-value=24 Score=18.79 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=14.1
Q ss_pred ccCCCHHHHHHHHHHhh
Q psy2977 71 KERDNIDITLQWLIAHS 87 (92)
Q Consensus 71 ~~~~gi~~~~~~l~~~i 87 (92)
.+|.+++.+++||..+.
T Consensus 31 ~~g~~~e~amewL~~h~ 47 (118)
T 4ae4_A 31 AAGANIEQILDYLFAHG 47 (118)
T ss_dssp HHCSCHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHhc
Confidence 46779999999998864
No 235
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=33.59 E-value=21 Score=14.97 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=11.8
Q ss_pred cCCCHHHHHHHHHHh
Q psy2977 72 ERDNIDITLQWLIAH 86 (92)
Q Consensus 72 ~~~gi~~~~~~l~~~ 86 (92)
++.+++.+.+||...
T Consensus 28 ~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 28 CNWDLEAATNFLLDS 42 (43)
T ss_dssp HTSCHHHHHHHHHTC
T ss_pred hCcCHHHHHHHHHcC
Confidence 466899999998754
No 236
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.47 E-value=26 Score=15.06 Aligned_cols=13 Identities=15% Similarity=0.567 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHHHh
Q psy2977 73 RDNIDITLQWLIAH 86 (92)
Q Consensus 73 ~~gi~~~~~~l~~~ 86 (92)
| +++.+.+||..+
T Consensus 34 ~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 34 S-TMEQATEYLLTH 46 (47)
T ss_dssp C-SHHHHHHHHHTC
T ss_pred C-CHHHHHHHHHcC
Confidence 5 899999999753
No 237
>4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A*
Probab=33.25 E-value=56 Score=21.45 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.2
Q ss_pred CeeCCchhhHHHHHHHHHHhhcC
Q psy2977 1 MVDAADTDKLEASRNELHALIEK 23 (92)
Q Consensus 1 v~D~s~~~~~~~~~~~~~~~~~~ 23 (92)
+||.+|+.+......|+.++...
T Consensus 301 ~VDl~d~~s~~~a~~WW~~lT~~ 323 (427)
T 4e6n_A 301 LVDVTDAESVDKGIKWWEDLTAS 323 (427)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHT
T ss_pred EeeCCCHHHHHHHHHHHHHHhcC
Confidence 58999999999999999998754
No 238
>3zth_A STU0660; DNA binding, crispr, CAS; 2.40A {Streptococcus thermophilus}
Probab=33.12 E-value=64 Score=20.60 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=33.2
Q ss_pred chhhHHHHHHHHHHhhcCCCCCCCcEEEEeeCCCCCCCCCHHH---HHHhhccCCcCCCceEEEeeccccC
Q psy2977 6 DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKE---LIDRMNLCAIQDREICCYSISCKER 73 (92)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~SA~~~ 73 (92)
+++.+....+.++++++. ...|+++|++-+|-- .+.++ +.+.+.....+..+..++..++..|
T Consensus 177 n~ekl~~fL~mL~~~ls~---~t~k~LLV~kNiD~~--Ls~~sy~~i~~~~~~ls~k~~nl~fi~fpS~eg 242 (350)
T 3zth_A 177 NIDKLSLFLEMLDHLLSQ---TTEKYLIVLKNIDGF--ISEESYTIFYRQICHLVKKYPNLTFILFPSDQG 242 (350)
T ss_dssp HHHHHHHHHHHHHHHHTT---CCSCEEEEEESCGGG--SCHHHHHHHHHHHHHHHHHCTTEEEEEECCSSS
T ss_pred cHHHHHHHHHHHHHHHhc---CCCcEEEEEeCHHHh--hcHHHHHHHHHHHHHHHhhCCCeEEEEEecCCC
Confidence 344444445566677654 467899999998842 23333 2222221111122355666666654
No 239
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=32.54 E-value=38 Score=21.95 Aligned_cols=58 Identities=10% Similarity=0.026 Sum_probs=32.4
Q ss_pred CCCcEEEEeeCCC--CCCCCC--HHHHHHhhccCCcCCCceEEEeeccccC---------------------CCHHHHHH
Q psy2977 27 IGIPILVLGNKRD--LPNALD--EKELIDRMNLCAIQDREICCYSISCKER---------------------DNIDITLQ 81 (92)
Q Consensus 27 ~~~p~ilv~NK~D--l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~~---------------------~gi~~~~~ 81 (92)
..+|+++++|+.+ +....+ ...+.+.... ...+..++++||+.. .|++.+..
T Consensus 221 t~KPviy~~Nv~e~~~~~~~n~~~~~v~~~~~~---~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~ 297 (396)
T 2ohf_A 221 TSKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDK---YDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIK 297 (396)
T ss_dssp GGSCEEEEEECCHHHHHHTCCHHHHHHHHHHHH---HSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHH
T ss_pred hCCceEEEEEecHHHhcccccHHHHHHHHHHHh---hCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHH
Confidence 4689999999973 321101 1223332210 012356899999852 56777776
Q ss_pred HHHHhh
Q psy2977 82 WLIAHS 87 (92)
Q Consensus 82 ~l~~~i 87 (92)
...+.+
T Consensus 298 ~~~~~L 303 (396)
T 2ohf_A 298 AGFAAL 303 (396)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 666554
No 240
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.55 E-value=31 Score=15.92 Aligned_cols=17 Identities=12% Similarity=0.657 Sum_probs=13.6
Q ss_pred cCCCHHHHHHHHHHhhh
Q psy2977 72 ERDNIDITLQWLIAHSK 88 (92)
Q Consensus 72 ~~~gi~~~~~~l~~~i~ 88 (92)
++.+++.+++||.....
T Consensus 33 t~~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 33 TNNSLERAVDWIFSHID 49 (63)
T ss_dssp TTSCSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhCCC
Confidence 45589999999988754
No 241
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=30.08 E-value=46 Score=18.03 Aligned_cols=19 Identities=5% Similarity=0.097 Sum_probs=12.8
Q ss_pred ccCCCHHHHHHHHHHhhhh
Q psy2977 71 KERDNIDITLQWLIAHSKS 89 (92)
Q Consensus 71 ~~~~gi~~~~~~l~~~i~~ 89 (92)
..+.++..+++.+...+..
T Consensus 105 ~~~s~~~~l~~~i~~~~~~ 123 (134)
T 2ale_A 105 NDASAIKTQIYAVKDKIET 123 (134)
T ss_dssp CTTCTTHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHH
Confidence 3455788888877776643
No 242
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.93 E-value=51 Score=16.33 Aligned_cols=17 Identities=24% Similarity=0.696 Sum_probs=14.3
Q ss_pred cCCCHHHHHHHHHHhhh
Q psy2977 72 ERDNIDITLQWLIAHSK 88 (92)
Q Consensus 72 ~~~gi~~~~~~l~~~i~ 88 (92)
++.+++.+++||..+..
T Consensus 53 t~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 53 NHMSVPQAMEWLIEHAE 69 (83)
T ss_dssp TTSCHHHHHHHHHHGGG
T ss_pred hCCCHHHHHHHHHHCCC
Confidence 47799999999998754
No 243
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=29.16 E-value=52 Score=18.11 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=12.3
Q ss_pred ccCCCHHHHHHHHHHhhh
Q psy2977 71 KERDNIDITLQWLIAHSK 88 (92)
Q Consensus 71 ~~~~gi~~~~~~l~~~i~ 88 (92)
..+.++.+.++.+.+.+.
T Consensus 123 ~~~s~i~~~~~~~~~~i~ 140 (144)
T 2jnb_A 123 KEGSQLKQQIQSIQQSIE 140 (144)
T ss_dssp CTTCTTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHH
Confidence 345678888877777664
No 244
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=28.86 E-value=15 Score=22.16 Aligned_cols=14 Identities=21% Similarity=0.199 Sum_probs=12.3
Q ss_pred CcEEEEeeCCCCCC
Q psy2977 29 IPILVLGNKRDLPN 42 (92)
Q Consensus 29 ~p~ilv~NK~Dl~~ 42 (92)
.++++|.||.|...
T Consensus 141 ~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 141 VNIIPVIAKADTMT 154 (270)
T ss_dssp SEEEEEETTGGGSC
T ss_pred CcEEEEEeccccCC
Confidence 79999999999763
No 245
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.28 E-value=44 Score=16.10 Aligned_cols=17 Identities=12% Similarity=0.595 Sum_probs=13.6
Q ss_pred cCCCHHHHHHHHHHhhh
Q psy2977 72 ERDNIDITLQWLIAHSK 88 (92)
Q Consensus 72 ~~~gi~~~~~~l~~~i~ 88 (92)
.|.+++.+++||..+..
T Consensus 34 ~n~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 34 GNSGAEAAMNWVMSHMD 50 (74)
T ss_dssp TSCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHhCCC
Confidence 34589999999998754
No 246
>4hn3_A LMO1757 protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 2.05A {Listeria monocytogenes}
Probab=26.78 E-value=75 Score=20.39 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=18.8
Q ss_pred HHHHHhhcCCCCCCCcEEEEeeCCC
Q psy2977 15 NELHALIEKPQLIGIPILVLGNKRD 39 (92)
Q Consensus 15 ~~~~~~~~~~~~~~~p~ilv~NK~D 39 (92)
+.+.++.+...+.++|++|.+=|..
T Consensus 181 ~iv~rlR~~~~l~nvPI~ialY~q~ 205 (350)
T 4hn3_A 181 TVLNRIRQTKGLENVPVTIAIYKQG 205 (350)
T ss_dssp HHHHHHTTSTTCSSSCEEEEEEECC
T ss_pred HHHHHHHhcCCCCCCCEEEEEeecC
Confidence 4566676666778999999987655
No 247
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.77 E-value=68 Score=15.51 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=14.4
Q ss_pred eeCCCCCCCCCHHHHHHhhcc
Q psy2977 35 GNKRDLPNALDEKELIDRMNL 55 (92)
Q Consensus 35 ~NK~Dl~~~~~~~~~~~~~~~ 55 (92)
+||.| |+..+.+++.....+
T Consensus 42 I~ktd-P~~LT~eEi~~FaRL 61 (71)
T 2eo2_A 42 IHKTD-PSTLTEEEVRKFARL 61 (71)
T ss_dssp CCCCS-TTTCCHHHHHHHHHT
T ss_pred CCCCC-cccCCHHHHhhceec
Confidence 57888 667788888776544
No 248
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.64 E-value=56 Score=14.19 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=11.9
Q ss_pred cCCCHHHHHHHHHHh
Q psy2977 72 ERDNIDITLQWLIAH 86 (92)
Q Consensus 72 ~~~gi~~~~~~l~~~ 86 (92)
++.+++.+.+||...
T Consensus 32 ~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 32 SYNNPHRAVEYLLTG 46 (49)
T ss_dssp TTSCSHHHHHHHHHC
T ss_pred hCCCHHHHHHHHHhC
Confidence 555899999999764
No 249
>3n2q_A Sex pheromone staph-CAM373; structural genomics, MCSG, PSI-2, protein structure initiati midwest center for structural genomics; 2.55A {Bacillus cereus}
Probab=21.55 E-value=1.2e+02 Score=18.83 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=19.7
Q ss_pred HHHHHHhhcCCCCCCCcEEEEeeCCC
Q psy2977 14 RNELHALIEKPQLIGIPILVLGNKRD 39 (92)
Q Consensus 14 ~~~~~~~~~~~~~~~~p~ilv~NK~D 39 (92)
.+.+.++.+..++.++|++|++=|..
T Consensus 115 ~~iv~rlR~~~~l~~vPI~ialy~q~ 140 (287)
T 3n2q_A 115 KQLIEAINKNDKYNKSPITFAIFKQE 140 (287)
T ss_dssp HHHHHHHHHCTTCCCCCEEEEEEECC
T ss_pred HHHHHHHHhcCCCCCCCEEEEEEeec
Confidence 34566676667788999999987765
No 250
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.52 E-value=75 Score=14.71 Aligned_cols=16 Identities=25% Similarity=0.817 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHHHhhh
Q psy2977 73 RDNIDITLQWLIAHSK 88 (92)
Q Consensus 73 ~~gi~~~~~~l~~~i~ 88 (92)
+.+++.+++||.....
T Consensus 35 ~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 35 NQGIEAAMDWLMEHED 50 (64)
T ss_dssp SCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhCCC
Confidence 4789999999998754
Done!