RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2977
(92 letters)
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 109 bits (275), Expect = 3e-32
Identities = 74/89 (83%), Positives = 83/89 (93%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
MVDAAD +K+EAS+NELH L++KPQL GIP+LVLGNKRDLP ALDEKELI++MNL AIQD
Sbjct: 97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQD 156
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKS 89
REICCYSISCKE+DNIDITLQWLI HSKS
Sbjct: 157 REICCYSISCKEKDNIDITLQWLIQHSKS 185
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 106 bits (267), Expect = 5e-31
Identities = 25/90 (27%), Positives = 52/90 (57%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D D++ +++EL+AL+++ +L +L+ NK+DLP+A E E+ +++ + +I +
Sbjct: 96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN 155
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKSH 90
R S K D + + WL+ +
Sbjct: 156 RTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 106 bits (266), Expect = 5e-31
Identities = 26/89 (29%), Positives = 53/89 (59%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D D++ S++EL A++E+ +L ++V NK+D+ A+ E+ + + L A++D
Sbjct: 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKD 140
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKS 89
R+ + S + +D ++WL+ KS
Sbjct: 141 RKWQIFKTSATKGTGLDEAMEWLVETLKS 169
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 101 bits (254), Expect = 5e-29
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 2 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDR 61
+D+AD + E + EL L+E+ +L +P+L+ NK+DL A E+ + +NL I+DR
Sbjct: 91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDR 150
Query: 62 EICCYSISCKERDNIDITLQWLIAHSKSHTR 92
S S + + + W+ + + +
Sbjct: 151 VWQIQSCSALTGEGVQDGMNWVCKNVNAKKK 181
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 100 bits (250), Expect = 2e-28
Identities = 23/88 (26%), Positives = 45/88 (51%)
Query: 2 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDR 61
VD+ D ++++ S +EL ++++ +L +LV NK+D+PNA+ EL D++ L ++ R
Sbjct: 104 VDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSR 163
Query: 62 EICCYSISCKERDNIDITLQWLIAHSKS 89
+ + + L WL
Sbjct: 164 TWYVQATCATQGTGLYDGLDWLSHELSK 191
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 98.8 bits (247), Expect = 3e-28
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 2 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDR 61
VD+ D +++ +R EL ++ + +L +LV NK+DLPNA++ E+ D++ L +++ R
Sbjct: 75 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 134
Query: 62 EICCYSISCKERDNIDITLQWLIAHSKSH 90
+ D + L WL ++
Sbjct: 135 NWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 99.3 bits (248), Expect = 4e-28
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIG--IPILVLGNKRDLPNALDEKELIDRMNLCAI 58
++D++D ++ ++ EL L+ P + IPIL NK DL +A+ ++ + L I
Sbjct: 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENI 156
Query: 59 QDREICCYSISCKERDNIDITLQWLIAHSKSH 90
+D+ + + + + + WL ++
Sbjct: 157 KDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 96.9 bits (242), Expect = 3e-27
Identities = 23/89 (25%), Positives = 45/89 (50%)
Query: 2 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDR 61
VD+AD +++ + EL +L+ + +L G +L+ NK+DLP AL + + + L +I+
Sbjct: 93 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSH 152
Query: 62 EICCYSISCKERDNIDITLQWLIAHSKSH 90
S +++ + WL+ S
Sbjct: 153 HWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 96.6 bits (241), Expect = 4e-27
Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 2 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDR 61
VD+ D D++ + ELH ++++ +L +LV NK+D P AL E+ +NL ++DR
Sbjct: 93 VDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDR 152
Query: 62 EICCYSISCKERDNIDITLQWLIAHSKSH 90
+ S + + I L WLI K
Sbjct: 153 SWSIVASSAIKGEGITEGLDWLIDVIKEE 181
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 94.6 bits (236), Expect = 3e-26
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQ- 59
+VDAAD ++ + +R EL AL +L +P ++LGNK D PNA+ E EL + L
Sbjct: 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTG 156
Query: 60 ------DREICCYSISCKERDNIDITLQWLIAH 86
R + + S R+ QWL +
Sbjct: 157 SQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 93.1 bits (232), Expect = 1e-25
Identities = 18/89 (20%), Positives = 43/89 (48%)
Query: 2 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDR 61
VD+ D +++ +R EL+ ++ L +L+ NK+D+ + E+ + L +I+D
Sbjct: 91 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDH 150
Query: 62 EICCYSISCKERDNIDITLQWLIAHSKSH 90
+ + + + L+W+++ K
Sbjct: 151 QWHIQACCALTGEGLCQGLEWMMSRLKIR 179
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 90.4 bits (225), Expect = 1e-24
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCA--- 57
+VD AD ++L S+ EL +L+ + +PIL+LGNK D P A+ E+ L + L
Sbjct: 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTT 158
Query: 58 ---------IQDREICCYSISCKERDNIDITLQWLIAH 86
+ R + + S +R +W+ +
Sbjct: 159 GKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 88.5 bits (220), Expect = 5e-24
Identities = 17/83 (20%), Positives = 41/83 (49%)
Query: 2 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDR 61
VD+ D +++ +R EL+ ++ L +L+ NK+D+ + E+ + L +I+D
Sbjct: 96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDH 155
Query: 62 EICCYSISCKERDNIDITLQWLI 84
+ + + + L+W++
Sbjct: 156 QWHIQACCALTGEGLCQGLEWMM 178
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 80.3 bits (198), Expect = 8e-20
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 2 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDR 61
VD+ D +++ +R EL ++ + +L +LV NK+DLPNA++ E+ D++ L +++ R
Sbjct: 240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 299
Query: 62 EICCYSISCKERDNIDITLQWLIAHSKSH 90
+ D + L WL ++
Sbjct: 300 NWYIQATCATSGDGLYEGLDWLSNQLRNQ 328
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 76.9 bits (189), Expect = 2e-18
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 2 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDR 61
VD AD D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++ L I+DR
Sbjct: 397 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 456
Query: 62 EICCYSISCKERDNIDITLQWLIAHSKSH 90
D + L WL ++ KS
Sbjct: 457 NWYVQPSCATSGDGLYEGLTWLTSNYKSK 485
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 60.1 bits (146), Expect = 6e-13
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 2 VDAADTDKLEASRNELHALIE-----KPQLIGIPILVLGNKRDLPNALDEKELIDRMNLC 56
D+A ++L A+ + + E L +PI++ NKRDLP+AL + + ++
Sbjct: 105 ADSAP-NRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP- 162
Query: 57 AIQDREICCYSISCKERDNIDITLQWLIAH 86
+ + E + TL+ +
Sbjct: 163 ---EGKFPVLEAVATEGKGVFETLKEVSRL 189
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 60.1 bits (146), Expect = 7e-13
Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 1 MVDAADTDK-LEASRNELHALIEKPQLI--GIPILVLGNKRDLPNALDEKELIDRMNLCA 57
+VD+A + ++ L+ ++ + +L+ NK+D+ A K + ++
Sbjct: 85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKEL 144
Query: 58 IQDREICCYSISCKERDNIDITLQWL 83
R S + D+ L
Sbjct: 145 NTLRVT--RSAAPSTLDSSSTAPAQL 168
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 57.8 bits (140), Expect = 5e-12
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 1 MVDAA-DTDKLEASRNELHALIEKPQLI---GIPILVLGNKRDLPNALDEKELIDRM--- 53
MVD+ D KL + L ++ + GI IL+ NK +L A ++ D +
Sbjct: 89 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESE 148
Query: 54 --NLCAIQDREICCYSISCKERDNIDITLQWL 83
+ + + + E D + TL L
Sbjct: 149 IQKVIERRKKSLNEVERKINEEDYAENTLDVL 180
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 56.7 bits (137), Expect = 1e-11
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 1 MVDAA-DTDKLEASRNELHALIEKPQLI---GIPILVLGNKRDLPNALDEKELIDRMNL 55
MVD+ D KL + L ++ + GI IL+ NK +L A ++ D +
Sbjct: 125 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 183
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 39.7 bits (92), Expect = 3e-05
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 4/63 (6%)
Query: 1 MVDAADTDKLEASRNELHALI---EKPQLIGIPILVLG-NKRDLPNALDEKELIDRMNLC 56
+ +A + E H + G P+LVL + + L ++L
Sbjct: 132 VANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLN 191
Query: 57 AIQ 59
+
Sbjct: 192 LLN 194
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 37.0 bits (85), Expect = 3e-04
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 4/63 (6%)
Query: 1 MVDAADTDKLEASRNELHALI---EKPQLIGIPILVLG-NKRDLPNALDEKELIDRMNLC 56
+ +A + E H + G P+LVL + + L ++L
Sbjct: 217 VANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLN 276
Query: 57 AIQ 59
+
Sbjct: 277 LLN 279
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 34.4 bits (80), Expect = 0.002
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 17/83 (20%)
Query: 1 MVDAADT--DKLEASRNELHA----LIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMN 54
++DAAD LE R E+ A L+ +P ++ L NK DL K L D
Sbjct: 242 VLDAADEPLKTLETLRKEVGAYDPALLRRPS-----LVAL-NKVDLLEEEAVKALADA-- 293
Query: 55 LCAIQDREICCYSISCKERDNID 77
+ + +S +
Sbjct: 294 ---LAREGLAVLPVSALTGAGLP 313
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 34.1 bits (78), Expect = 0.002
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 1 MVDAADT--DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAI 58
+ D ++ LE + + + +P LV+ NK D+ + + K L +
Sbjct: 253 IFDPSEHCGFPLEEQIHLFEEV--HGEFKDLPFLVVINKIDVADEENIKRLEK-----FV 305
Query: 59 QDREICCYSISCKERDNID 77
+++ + IS + ID
Sbjct: 306 KEKGLNPIKISALKGTGID 324
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 33.6 bits (78), Expect = 0.003
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 14/77 (18%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+DA E++ ++ P++++ NK DL L N+ I
Sbjct: 310 TIDA--ATGWTTGDQEIYEQVK-----HRPLILVMNKIDLVEKQLITSLEYPENITQI-- 360
Query: 61 REICCYSISCKERDNID 77
+ ++ ID
Sbjct: 361 -----VHTAAAQKQGID 372
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 33.8 bits (77), Expect = 0.004
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 8/91 (8%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLI--GIPILVLGNKRDLPNALDEKELIDRMN---- 54
+ D T+ L+ +++ + I VL +K DL +EL M
Sbjct: 87 VFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLS 145
Query: 55 -LCAIQDREICCYSISCKERDNIDITLQWLI 84
+ + +++ ++
Sbjct: 146 ETSSEFGFPNLIGFPTSIWDESLYKAWSQIV 176
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 33.3 bits (77), Expect = 0.005
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 21/87 (24%)
Query: 1 MVDAADTDK------LEASRNELHA----LIEKPQLIGIPILVLGNKRDLPNALDEKELI 50
++D + + EL L E+PQ I+V NK D+P + E +
Sbjct: 243 VIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQ-----IIVA-NKMDMP---EAAENL 293
Query: 51 DRMNLCAIQDREICCYSISCKERDNID 77
+ D + + IS R+ +
Sbjct: 294 EAFKEKLTDDYPV--FPISAVTREGLR 318
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 32.9 bits (76), Expect = 0.006
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 12/77 (15%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
MVD T E+ +PI V+ NK D+ ++ L
Sbjct: 90 MVDG--TTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALI---- 143
Query: 61 REICCYSISCKERDNID 77
+S + + +D
Sbjct: 144 ------RLSARTGEGVD 154
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 32.9 bits (76), Expect = 0.006
Identities = 15/77 (19%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
++DA + L+ ++ I+ LV+ NK D+ ++E+E+ +++ D
Sbjct: 330 VLDA--SSPLDEEDRKILERIK-----NKRYLVVINKVDVVEKINEEEIKNKLG----TD 378
Query: 61 REICCYSISCKERDNID 77
R + IS + + ++
Sbjct: 379 RHMV--KISALKGEGLE 393
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 32.4 bits (74), Expect = 0.010
Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 1 MVDAADTD--KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRM--NLC 56
++D ++ ++ N +++ K I++ NK D N + +
Sbjct: 115 IIDISEQCGLTIKEQINLFYSI--KSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQIL 172
Query: 57 AIQDREICCYSISCKERDNID 77
I S S ++
Sbjct: 173 DNVKNPIKFSSFSTLTGVGVE 193
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 31.5 bits (72), Expect = 0.022
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 29 IPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84
IPI++ GNK D + ++++ + + + + + Y IS K N + WL
Sbjct: 120 IPIVLCGNKVD----IKDRKVKAKSIVFH-RKKNLQYYDISAKSNYNFEKPFLWLA 170
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 31.4 bits (72), Expect = 0.024
Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 9/77 (11%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
++D L+ E+ L L + NK D D +
Sbjct: 319 LLDLGTER-LDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALIRA----IADGTG 371
Query: 61 REICCYSISCKERDNID 77
E+ IS D ID
Sbjct: 372 TEVI--GISALNGDGID 386
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 31.1 bits (70), Expect = 0.028
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 2 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDR 61
V + + L + PI+V+ K D E+ + D +
Sbjct: 172 VSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG---VERYIRDAHTFAL-SKK 227
Query: 62 EICCYSISCKERDNID 77
+ S + N+D
Sbjct: 228 NLQVVETSARSNVNVD 243
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 30.4 bits (69), Expect = 0.047
Identities = 9/67 (13%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 20 LIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDIT 79
++ + + IP +V+ NK D+ ++ E + + + + ++ +S ++ D
Sbjct: 132 VVNLFKEMEIPFVVVVNKIDVLG--EKAEELKGL-YESRYEAKVLL--VSALQKKGFDDI 186
Query: 80 LQWLIAH 86
+ +
Sbjct: 187 GKTISEI 193
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.17
Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 33/97 (34%)
Query: 3 DAADTDKLEASRNELHALIEKPQ-------LIGIPILVLGNKRDLPNALDEKELIDRMNL 55
D +K+ + +E P L+ IPI P LI
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-------SCP-------LI----- 241
Query: 56 CAIQDREICCYSISCKERD----NIDITLQWLIAHSK 88
IQ + Y ++ K + L+ HS+
Sbjct: 242 GVIQ---LAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 28.8 bits (64), Expect = 0.19
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 2 VDAADTDKLEASRNELHALIEKPQLI--GIPILVLGNKRDLPNA---LDEKELIDRMNLC 56
+DA D + LH + K + + V +K D + ++ + I +
Sbjct: 103 IDA--QDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRAND 160
Query: 57 AIQDREICCYSISC 70
+ D + +S
Sbjct: 161 DLADAGLEKLHLSF 174
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 28.7 bits (65), Expect = 0.19
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWL 83
+ +++ NK DL DE +L L I S K I+ ++L
Sbjct: 115 ELETVMVINKMDL---YDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL 167
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 28.3 bits (64), Expect = 0.22
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 14 RNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDR---MNLCAIQDREICCYSISC 70
R+E P ++LGNK D + K+++ L +I + S
Sbjct: 104 RDEFLVHANVNSPETFPFVILGNKIDAE---ESKKIVSEKSAQELAK-SLGDIPLFLTSA 159
Query: 71 KERDNID 77
K N+D
Sbjct: 160 KNAINVD 166
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 28.4 bits (63), Expect = 0.27
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNID 77
P++V+ NK D + + ++ AI++R + ISCK D ++
Sbjct: 150 KSPVIVVMNKIDENPSYNIEQKKINERFPAIENR---FHRISCKNGDGVE 196
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 28.1 bits (63), Expect = 0.27
Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 29 IPILVLGNKRDLPN--------ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80
P++++G D+ + + KEL+++ AI+D + + +E D +
Sbjct: 113 SPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRD---YHFVNATEESDALAKLR 169
Query: 81 QWLIAH 86
+ I +
Sbjct: 170 K-TIIN 174
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 28.0 bits (63), Expect = 0.35
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 14 RNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKER 73
R+E P +VLGNK DL N + C I + S KE
Sbjct: 103 RDEFLIQASPRDPENFPFVVLGNKIDLENRQVATK--RAQAWCY-SKNNIPYFETSAKEA 159
Query: 74 DNID 77
N++
Sbjct: 160 INVE 163
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 28.1 bits (63), Expect = 0.35
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 13/60 (21%)
Query: 29 IPILVLGNKRDLPN-----ALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWL 83
PI+V NK D+ N E++ N + IS K N + L
Sbjct: 118 APIVVCANKIDIKNRQKISKKLVMEVLKGKNY--------EYFEISAKTAHNFGLPFLHL 169
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 27.5 bits (62), Expect = 0.45
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREI--CCYSISCKERDNID 77
+ +++ NK DL N ++KEL +++ R+ +S K + ID
Sbjct: 110 KVEPVIVFNKIDLLNEEEKKELERWISIY----RDAGYDVLKVSAKTGEGID 157
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 27.5 bits (62), Expect = 0.46
Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 14/56 (25%)
Query: 29 IPILVLGNKRDLPNAL-------DEKELIDRMNLCAIQDREICCYSISCKERDNID 77
+P++++G + + A ++L + C Y N++
Sbjct: 120 VPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCT-------YYETCATYGLNVE 168
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 27.5 bits (62), Expect = 0.50
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 14 RNELHALIEKPQLIGIPILVLGNKRDLPN 42
+ E + + P ++LGNK D+
Sbjct: 102 KKEFIYYADVKEPESFPFVILGNKIDISE 130
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 27.3 bits (60), Expect = 0.62
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 7 TDKLEASRNELHALIEKPQLI--GIPILVLGNKRDLPNA---LDEKELIDRMNLCAIQDR 61
D+ + L +IE + I I VL +K D + +D + I + + +
Sbjct: 83 QDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLEL 142
Query: 62 EICCYSISC 70
+ +S
Sbjct: 143 GLDGVQVSF 151
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 26.8 bits (60), Expect = 0.76
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 7 TDKLEASRNELHALIE------KPQLIGIPILVLGNKRDL 40
+ S + + +E K IP L+LGNK D+
Sbjct: 102 DSR--QSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 27.1 bits (61), Expect = 0.77
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNID 77
I ++ K DL D ++ I ++ Y S K++D++
Sbjct: 117 DIQPIICITKMDLIEDQDTEDTIQAY-AEDYRNIGYDVYLTSSKDQDSLA 165
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 26.8 bits (60), Expect = 0.89
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREI--CCYSISCKERDNIDITLQWL 83
+ L++ NK DL + + ++M++ R I +S +D + + L
Sbjct: 160 QVEPLIVLNKIDLLDDEGMDFVNEQMDIY----RNIGYRVLMVSSHTQDGLKPLEEAL 213
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural
genomics, center for structural of infectious diseases,
csgid; HET: FAD; 2.20A {Vibrio cholerae}
Length = 357
Score = 26.8 bits (60), Expect = 0.90
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 12 ASRNELHALIEKPQLIGIPILVLGN 36
S ++L AL + +P L++G
Sbjct: 38 ESIDDLKALYCSAEWASLPKLIIGK 62
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 0.93
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 14/38 (36%)
Query: 9 KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE 46
KL+AS +L+A P L + A E
Sbjct: 24 KLQASL-KLYA----DD--SAPALAI-------KATME 47
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase;
peptidoglycan synthesis, cell WALL, cell division,
oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia
coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A*
2q85_A* 2mbr_A*
Length = 340
Score = 26.7 bits (60), Expect = 1.2
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 12 ASRNELHALIEKPQLIGIPILVLGN 36
+L + G P+L+LG
Sbjct: 22 EDEQQLLNAWQYATAEGQPVLILGE 46
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 26.3 bits (59), Expect = 1.2
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 11 EASRNELHALIEKPQLI----GIPILVLGNKRDLPNALDEKELIDR---MNLCAIQDREI 63
+++ N+L L E+ + +P++++GNK DL DE+ + + NL A Q
Sbjct: 87 QSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE---DERV-VGKEQGQNL-ARQWCNC 141
Query: 64 CCYSISCKERDNID 77
S K + N++
Sbjct: 142 AFLESSAKSKINVN 155
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 26.3 bits (59), Expect = 1.4
Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 20/81 (24%)
Query: 7 TDKLEASRNELHALIE-----KPQLIGIPILVLGNKRDLPN----ALDE-KELIDRMNLC 56
T + S EL + E K + IPI+++GNK D E + L
Sbjct: 85 TSR--QSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK-- 140
Query: 57 AIQDREICCYSISCKERDNID 77
S K N+
Sbjct: 141 ------CAFMETSAKLNHNVK 155
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 26.0 bits (58), Expect = 1.9
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 29 IPILVLGNKRDLPN 42
+ ++++GNK DL +
Sbjct: 133 VTLILVGNKADLDH 146
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 25.8 bits (57), Expect = 1.9
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDRE 62
G+PI+++G K DL + D++ ID I +
Sbjct: 112 GVPIVLVGTKLDLRD--DKQFFIDHPGAVPITTVQ 144
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 25.9 bits (58), Expect = 2.0
Identities = 12/80 (15%), Positives = 31/80 (38%), Gaps = 19/80 (23%)
Query: 7 TDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN----ALDE-KELIDRMNLCA 57
++ S ++ + ++ + +P++++GNK DL + + E + L +
Sbjct: 85 VNQ--QSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWG--- 139
Query: 58 IQDREICCYSISCKERDNID 77
S K + +D
Sbjct: 140 -----CPFMETSAKSKTMVD 154
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 25.6 bits (57), Expect = 2.0
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 11 EASRNELHALIEKPQLI----GIPILVLGNKRDLPN 42
+AS + + + P++++ NK DL +
Sbjct: 102 KASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 25.5 bits (57), Expect = 2.0
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 16/75 (21%)
Query: 11 EASRNELHALIEKPQLI----GIPILVLGNKRDLPN---ALDE-KELIDRMNLCAIQDRE 62
S ++H E+ + + +P++++GNK DL + ++L
Sbjct: 87 TKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG-------- 138
Query: 63 ICCYSISCKERDNID 77
I S K R ++
Sbjct: 139 IPYIETSAKTRQGVE 153
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 25.8 bits (57), Expect = 2.1
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDRE 62
PI+++G + DL + +D+ + +
Sbjct: 124 KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA 158
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 25.6 bits (57), Expect = 2.1
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 7 TDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN 42
T+ S E+ + +P L++GNK DL +
Sbjct: 100 TEM--ESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 25.9 bits (58), Expect = 2.1
Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+V+ + ++ K + P+++ NK D ++ +L+ + A Q
Sbjct: 95 VVEGTRWTPDDE------MVLNKLREGKAPVILAVNKVDNVQ--EKADLLPHLQFLASQM 146
Query: 61 REICCYSISCKERDNIDITLQWLIAH 86
+ IS + N+D + H
Sbjct: 147 NFLDIVPISAETGLNVDTIAAIVRKH 172
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 25.5 bits (56), Expect = 2.4
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDRE 62
PI+++G K DL + D E + L I +
Sbjct: 134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 168
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 25.5 bits (56), Expect = 2.6
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDRE 62
+PI+++GNK+DL + + +M ++ E
Sbjct: 129 NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEE 163
>1lh0_A OMP synthase; loop closure, monomer closure, orotate
phosphoribosyltransferase; HET: ORO PRP; 2.00A
{Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A*
1sto_A* 1oro_A
Length = 213
Score = 25.5 bits (56), Expect = 2.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 8 DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID 51
D+ E R E+ A+ E + G ++ + +DL L+EK +
Sbjct: 155 DRQERGRGEISAIQEVERDYGCKVISIITLKDLIAYLEEKPDMA 198
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure
2 function project, S2F, structu genomics, unknown
function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa}
SCOP: c.47.1.12
Length = 114
Score = 25.2 bits (56), Expect = 2.8
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 6 DTDKLEASRNELHALI-EKPQLIGIPILVLGNK 37
+ K + + L+ +P +I P+L LG +
Sbjct: 67 EAQKADLDEAKAIELMLAQPSMIKRPVLELGGR 99
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 25.1 bits (56), Expect = 2.8
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 7 TDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN 42
T+ S E+ + +P L++GNK DL +
Sbjct: 86 TEM--ESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 25.2 bits (56), Expect = 3.0
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 7 TDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN 42
D+ S NE+ L + + P++++GNK DL +
Sbjct: 91 NDR--QSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 25.2 bits (56), Expect = 3.2
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 16/75 (21%)
Query: 11 EASRNELHALIEKPQLI----GIPILVLGNKRDLPN---ALDE-KELIDRMNLCAIQDRE 62
S +++ E+ + + +P++++GNK DLP + EL
Sbjct: 105 SKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYG-------- 156
Query: 63 ICCYSISCKERDNID 77
I S K R ++
Sbjct: 157 IPFIETSAKTRQGVE 171
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 25.4 bits (56), Expect = 3.5
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 18 HALIEKPQLIGIPILVLGNKRDLPNALDEKEL 49
H LI IPI+V+ K D +E+
Sbjct: 117 HMLILD--HFNIPIIVVITKSDN---AGTEEI 143
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 25.2 bits (56), Expect = 3.6
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 29 IPILVLGNKRDLPN 42
IPI+++GNK+DL
Sbjct: 112 IPIMLVGNKKDLHM 125
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 25.1 bits (55), Expect = 3.7
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDRE 62
+PI+V+G K DL + R L +
Sbjct: 138 KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHR 172
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 24.9 bits (55), Expect = 3.7
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 7 TDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN 42
T+ S E+ + +P L++GNK DL +
Sbjct: 96 TEM--ESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 24.8 bits (55), Expect = 4.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 29 IPILVLGNKRDLPN 42
+PI+++GNK DL
Sbjct: 112 VPIILVGNKADLAR 125
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 24.9 bits (55), Expect = 4.0
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 11 EASRNELHALIEKPQLI----GIPILVLGNKRDLPN 42
S ++H E+ + + +P++++GNK DLP+
Sbjct: 88 TKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 24.8 bits (55), Expect = 4.2
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 7 TDKLEASRNELHALIEKPQLI----GIPILVLGNKRDL 40
TDK S + L + + +PI+++GNK DL
Sbjct: 83 TDK--GSFEKASELRVQLRRARQTDDVPIILVGNKSDL 118
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1;
alpha(2)beta(2) tetramer, riken structural
genomics/proteomi initiative, RSGI; HET: PLP; 2.10A
{Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A*
1wyv_A*
Length = 438
Score = 24.8 bits (55), Expect = 4.3
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 29 IPILVLGNKRDLPNALDEKELIDRMNLCAIQDREI 63
+P +L DLP L E ++++ + A Q+
Sbjct: 30 LPKEILSPPIDLPEPLPEWKVLEELRRLAAQNLPA 64
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, infectious diseases; 2.10A
{Vibrio cholerae}
Length = 238
Score = 24.8 bits (54), Expect = 4.3
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 8 DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID 51
D+ E + EL A+ E + G ++ + + DL L+++
Sbjct: 180 DRQEKGKGELSAIQEVERDFGCAVISIVSLTDLITYLEQQGNNT 223
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 24.9 bits (55), Expect = 4.6
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 11 EASRNELHALIEKPQLI----GIPILVLGNKRDL 40
S + +L +K +P++++GNK DL
Sbjct: 108 LHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 24.8 bits (54), Expect = 4.7
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 10/60 (16%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDRE----------ICCYSISCKERDNID 77
+P L++G + DL + ++ M I + C S + +
Sbjct: 122 NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLK 181
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 24.5 bits (54), Expect = 5.0
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 19/80 (23%)
Query: 7 TDKLEASRNELHALIE-----KPQLIGIPILVLGNKRDLPN---ALDE-KELIDRMNLCA 57
T K S EL + + K + IP++++GNK D E + +
Sbjct: 90 TSK--QSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWK--- 144
Query: 58 IQDREICCYSISCKERDNID 77
S K N+
Sbjct: 145 -----CAFMETSAKMNYNVK 159
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 24.6 bits (54), Expect = 5.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 29 IPILVLGNKRDLPN 42
IPI+++GNK DL
Sbjct: 146 IPIILVGNKSDLVR 159
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 24.3 bits (53), Expect = 5.7
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDRE 62
PI+++G K DL + D E + L I +
Sbjct: 109 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 143
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 24.5 bits (54), Expect = 5.9
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 29 IPILVLGNKRDLPN 42
+P++++GNK DL
Sbjct: 131 LPVILVGNKSDLAR 144
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 24.3 bits (53), Expect = 6.0
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDRE 62
+PI+++ NK+DL + + + RM ++ +
Sbjct: 129 NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDD 163
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 24.5 bits (53), Expect = 6.1
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGI-PILVLGNKRDL-PNALDEKELIDRMNLCAI 58
+VD D S P+ PIL++GNK DL P ++ +L+ M A
Sbjct: 78 IVDIFDF---NGSFIP-----GLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE 129
Query: 59 QD--REICCYSISCKERDNIDITLQWLIAHSK 88
+ + +S + + ++ + + +
Sbjct: 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 24.6 bits (54), Expect = 6.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 10/42 (23%)
Query: 7 TDKLEASRNELHALIEKPQLI------GIPILVLGNKRDLPN 42
TD+ AS + L QL IPI+++GNK DL
Sbjct: 91 TDR--ASFEKASELRI--QLRRARQTEDIPIILVGNKSDLVR 128
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 24.4 bits (54), Expect = 6.2
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 29 IPILVLGNKRDLPN 42
+P++++GNK DL
Sbjct: 110 LPVILVGNKSDLAR 123
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 23.9 bits (52), Expect = 8.2
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDRE 62
+L++G K DL + + + +
Sbjct: 132 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ 166
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 23.9 bits (52), Expect = 8.4
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDRE 62
+L++G K DL + + + +
Sbjct: 111 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ 145
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 24.2 bits (53), Expect = 8.4
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 28 GIPILVLGNKRDLPNALDEK---ELIDRMNLCAIQDREICCYSISCKERDNID 77
+PI+V NK D P A ++ EL++ + + +S K ++ +D
Sbjct: 107 NVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLD 159
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 24.2 bits (52), Expect = 8.6
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDRE 62
PI+++G K DL + D E + L I +
Sbjct: 259 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 293
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan
synthesis, cell WALL, cell division, oxidoreductase,
NADP, flavoprotein, FAD; HET: FAD; 2.30A
{Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Length = 326
Score = 24.0 bits (53), Expect = 8.9
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 12 ASRNELHALIEKPQLIGIPILVLGN 36
E+ A+++ IP+ LGN
Sbjct: 56 TKNEEVQAVVKYAYQNEIPVTYLGN 80
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 23.9 bits (52), Expect = 9.2
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMN 54
+PI+++G K DL + D+ L D N
Sbjct: 113 NVPIVLVGTKLDLRD--DKGYLADHTN 137
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: FAD; 2.69A {Listeria
monocytogenes}
Length = 322
Score = 24.0 bits (53), Expect = 9.3
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 12 ASRNELHALIEKPQLIGIPILVLGN 36
+ E ++ IP+ +LGN
Sbjct: 62 KTIEEAQEVVAYCHQNKIPLTILGN 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.404
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,357,053
Number of extensions: 69574
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 109
Length of query: 92
Length of database: 6,701,793
Length adjustment: 59
Effective length of query: 33
Effective length of database: 5,054,454
Effective search space: 166796982
Effective search space used: 166796982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)