RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2977
(92 letters)
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 57.8 bits (138), Expect = 1e-12
Identities = 73/88 (82%), Positives = 82/88 (93%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
MVDAAD +K+EAS+NELH L++KPQL GIP+LVLGNKRDLP ALDEKELI++MNL AIQD
Sbjct: 77 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQD 136
Query: 61 REICCYSISCKERDNIDITLQWLIAHSK 88
REICCYSISCKE+DNIDITLQWLI HSK
Sbjct: 137 REICCYSISCKEKDNIDITLQWLIQHSK 164
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 52.3 bits (124), Expect = 2e-10
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD AD D+++ +R ELH +I ++ IL+ NK+DLP+A+ E+ +++ L I+D
Sbjct: 86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 145
Query: 61 REICCYSISCKERDNIDITLQWLIAHSK 88
R D + L WL ++ K
Sbjct: 146 RNWYVQPSCATSGDGLYEGLTWLTSNYK 173
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 50.3 bits (119), Expect = 8e-10
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
++D+AD + E + EL L+E+ +L +P+L+ NK+DL A E+ + +NL I+D
Sbjct: 90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD 149
Query: 61 REICCYSISCKERDNIDITLQWLIAH 86
R S S + + + W+ +
Sbjct: 150 RVWQIQSCSALTGEGVQDGMNWVCKN 175
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 49.6 bits (117), Expect = 2e-09
Identities = 28/90 (31%), Positives = 47/90 (52%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D D++ + ELH ++++ +L +LV NK+D P AL E+ +NL ++D
Sbjct: 91 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKD 150
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKSH 90
R + S + + I L WLI K
Sbjct: 151 RSWSIVASSAIKGEGITEGLDWLIDVIKEE 180
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 46.6 bits (109), Expect = 2e-08
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+AD +++ + EL +L+ + +L G +L+ NK+DLP AL + + + L +I+
Sbjct: 76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRS 135
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKS 89
S +++ + WL+ S
Sbjct: 136 HHWRIQGCSAVTGEDLLPGIDWLLDDISS 164
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 45.4 bits (106), Expect = 7e-08
Identities = 18/88 (20%), Positives = 44/88 (50%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D +++ +R EL+ ++ L +L+ NK+D+ + E+ + L +I+D
Sbjct: 89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD 148
Query: 61 REICCYSISCKERDNIDITLQWLIAHSK 88
+ + + + L+W+++ K
Sbjct: 149 HQWHIQACCALTGEGLCQGLEWMMSRLK 176
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 42.0 bits (97), Expect = 1e-06
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAI-- 58
+VDAAD ++ + +R EL AL +L +P ++LGNK D PNA+ E EL + L
Sbjct: 74 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTG 133
Query: 59 -----QDREICCYSISCKERDNIDITLQWLIAH 86
R + + S R+ QWL +
Sbjct: 134 SQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 166
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 41.2 bits (95), Expect = 2e-06
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNL----- 55
+VD AD ++L S+ EL +L+ + +PIL+LGNK D P A+ E+ L + L
Sbjct: 87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTT 146
Query: 56 -------CAIQDREICCYSISCKERDNIDITLQWLIAH 86
+ R + + S +R +W+ +
Sbjct: 147 GKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 41.2 bits (95), Expect = 2e-06
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D +++ +R EL ++ + +L +LV NK+DLPNA++ E+ D++ L +++
Sbjct: 74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 133
Query: 61 REICCYSISCKERDNIDITLQWLIAH 86
R + D + L WL
Sbjct: 134 RNWYIQATCATSGDGLYEGLDWLSNQ 159
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 38.2 bits (87), Expect = 3e-05
Identities = 26/89 (29%), Positives = 53/89 (59%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+VD+ D D++ S++EL A++E+ +L ++V NK+D+ A+ E+ + + L A++D
Sbjct: 79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKD 138
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKS 89
R+ + S + +D ++WL+ KS
Sbjct: 139 RKWQIFKTSATKGTGLDEAMEWLVETLKS 167
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 34.5 bits (78), Expect = 6e-04
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 14 RNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKER 73
+ E + + P ++LGNK D+ E + + + S K+
Sbjct: 101 KKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAW---CRDNGDYPYFETSAKDA 157
Query: 74 DNIDITLQWLI 84
N+ + +
Sbjct: 158 TNVAAAFEEAV 168
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 33.1 bits (74), Expect = 0.002
Identities = 10/56 (17%), Positives = 25/56 (44%)
Query: 29 IPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84
I I ++GNK D+ E+++ +++ + + S K +N++ +
Sbjct: 109 IIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG 164
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 33.1 bits (74), Expect = 0.002
Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 1 MVDAADTDK-LEASRNELHALIEKPQLI--GIPILVLGNKRDLPNALDEKELIDRM 53
+VD+A + ++ L+ ++ + +L+ NK+D+ A K + ++
Sbjct: 78 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQL 133
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 32.7 bits (73), Expect = 0.003
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 4/90 (4%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+ +T E + +P++++GNK DL E + +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDL----ARS 136
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKSH 90
I S K R ++ L+ + H
Sbjct: 137 YGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 32.7 bits (73), Expect = 0.003
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84
IPI++ GNK D+ + + ++ + + + Y IS K N + WL
Sbjct: 107 NIPIVLCGNKVDI-----KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 158
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 32.2 bits (72), Expect = 0.003
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+ + + A+ + ++ + +P L++GNK DL +
Sbjct: 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV---EEAKNRADQ 138
Query: 61 REICCYSISCKERDNIDITLQWLIAHSKS 89
+ S K R N+D L+ ++
Sbjct: 139 WNVNYVETSAKTRANVDKVFFDLMREIRA 167
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 32.2 bits (72), Expect = 0.004
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84
+P++++GNK DL + + R ++ S K + +D ++
Sbjct: 108 KVPVILVGNKVDLESEREVSSSEGRAL---AEEWGCPFMETSAKSKTMVDELFAEIV 161
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 29.5 bits (65), Expect = 0.033
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAH 86
I I+++GNK DL + + + + + S + N++ + ++
Sbjct: 109 NIVIMLVGNKSDLRH---LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE 164
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 29.6 bits (65), Expect = 0.039
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+ ++ ++ +P++++GNK DL + + ++ A Q
Sbjct: 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK--EQGQNLARQW 138
Query: 61 REICCYSISCKERDNIDITLQWLI 84
S K + N++ L+
Sbjct: 139 CNCAFLESSAKSKINVNEIFYDLV 162
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 29.2 bits (64), Expect = 0.043
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 10/67 (14%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLC----------AIQDREICCYSISCKERDNID 77
PI+++G K DL + D E + L A + + S + +
Sbjct: 109 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 168
Query: 78 ITLQWLI 84
I
Sbjct: 169 TVFDEAI 175
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 28.4 bits (62), Expect = 0.082
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIA 85
+ I+++GNK DL D++++ ++ + S K N+ + + A
Sbjct: 105 DVIIMLVGNKTDLA---DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 159
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 28.6 bits (63), Expect = 0.088
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLC 56
+ + T++L+ + N ++ L I +++ NK+DL L EK L + +
Sbjct: 87 IREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL---LAEKVLAGKSKIE 139
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 28.1 bits (61), Expect = 0.11
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 30 PILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89
P++++GNK DL + ++++ + + S K R N+D + L+ +
Sbjct: 113 PVVLVGNKADLES---QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 169
Query: 90 H 90
+
Sbjct: 170 Y 170
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.5 bits (60), Expect = 0.18
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84
+ I+++GNK DL + +++ ++ + S K N++
Sbjct: 108 NMVIMLIGNKSDLES---RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA 161
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 27.6 bits (60), Expect = 0.20
Identities = 7/63 (11%), Positives = 16/63 (25%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+ D K + +G + NK DL + +++
Sbjct: 130 ISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLT 189
Query: 61 REI 63
+
Sbjct: 190 ARL 192
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 27.3 bits (59), Expect = 0.21
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 30 PILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84
P ++LGNK D + A +I + S K N+D + +
Sbjct: 114 PFVILGNKIDAEESKKIVS-EKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIA 167
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 27.1 bits (59), Expect = 0.22
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 21 IEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITL 80
I+++GNK DL + A ++ + S K +N++
Sbjct: 102 ARNLTNPNTVIILIGNKADLEA--QRDVTYEEAKQFA-EENGLLFLEASAKTGENVEDAF 158
Query: 81 QWLI 84
Sbjct: 159 LEAA 162
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 27.3 bits (59), Expect = 0.27
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 16 ELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMN-----LCAIQDREICCYSISC 70
++ ++ E GI IL+ NK +L A ++ D + + + + +
Sbjct: 99 DILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKI 158
Query: 71 KERDNIDITLQWL 83
E D + TL L
Sbjct: 159 NEEDYAENTLDVL 171
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ),
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 26.2 bits (57), Expect = 0.62
Identities = 9/56 (16%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWL 83
+ +++ NK DL + D +++ + + + + S K I+ ++L
Sbjct: 41 ELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKT---SAKTGMGIEELKEYL 93
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 25.4 bits (54), Expect = 1.0
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 53 MNLCAIQDREICCYSISCKERDNIDITLQWLI 84
+ ++ Y S KE N+ ++L
Sbjct: 128 EAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 159
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 25.5 bits (55), Expect = 1.1
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 4/84 (4%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+ D + + RN + + E +++ KE +++ D
Sbjct: 85 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKL----ALD 140
Query: 61 REICCYSISCKERDNIDITLQWLI 84
I S K N++ L
Sbjct: 141 YGIKFMETSAKANINVENAFFTLA 164
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 25.2 bits (54), Expect = 1.3
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 59 QDREICCYSISCKERDNIDITLQWLI 84
++ + S K N+D+ +
Sbjct: 140 KEYGLPFMETSAKTGLNVDLAFTAIA 165
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 25.0 bits (53), Expect = 1.3
Identities = 4/29 (13%), Positives = 8/29 (27%)
Query: 56 CAIQDREICCYSISCKERDNIDITLQWLI 84
D + S K N++ +
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIA 164
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 24.9 bits (53), Expect = 1.5
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 30 PILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLIAHSKS 89
PI+++GNK + + A + + S K N+ Q L+ K
Sbjct: 110 PIMLVGNK--CDESPSREVQSSEAEALA-RTWKCAFMETSAKLNHNVKELFQELLNLEKR 166
Query: 90 HT 91
T
Sbjct: 167 RT 168
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 25.0 bits (53), Expect = 1.6
Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 10/66 (15%)
Query: 29 IPILVLGNKRDLPNALDEKELIDRMNLC----------AIQDREICCYSISCKERDNIDI 78
P L++G + DL + E + + A + + S + +
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKN 167
Query: 79 TLQWLI 84
I
Sbjct: 168 VFDEAI 173
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 24.8 bits (53), Expect = 1.7
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 53 MNLCAIQDREICCYSISCKERDNIDITLQWLI 84
+ S K+ N+ T + L+
Sbjct: 132 RGRQLADHLGFEFFEASAKDNINVKQTFERLV 163
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex
p62 subunit (BTF2-p62), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 108
Score = 24.4 bits (53), Expect = 1.8
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 71 KERDNIDITLQWLIAHSKS 89
KERD + LQ L+ K
Sbjct: 87 KERDAVKDLLQQLLPKFKR 105
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 24.9 bits (53), Expect = 1.8
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 29 IPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84
I I++ GNK+DL ++E+ Q+ E+ S +N++
Sbjct: 111 IVIILCGNKKDLDA---DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA 163
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 24.8 bits (53), Expect = 1.8
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 29 IPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84
I+++GNK DLP+ + E R I + S N++ ++ L+
Sbjct: 122 PDIVLIGNKADLPDQREVNE---RQARELADKYGIPYFETSAATGQNVEKAVETLL 174
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 24.6 bits (52), Expect = 1.8
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 30 PILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84
P++++GNK DL + ++++ + ++ S K R N+D L+
Sbjct: 112 PMILIGNKADLDH---QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV 163
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 24.4 bits (52), Expect = 2.0
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 1 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQD 60
+ D D N L+ L I +++GNK D N +E+ L +
Sbjct: 86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN----REVDRNEGLKFARK 141
Query: 61 REICCYSISCKERDNIDITLQWLI 84
+ S K D + + L+
Sbjct: 142 HSMLFIEASAKTCDGVQCAFEELV 165
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 24.6 bits (52), Expect = 2.1
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 10/66 (15%)
Query: 29 IPILVLGNKRDLPNALDEKELIDRMNLCAIQDRE----------ICCYSISCKERDNIDI 78
+P L++G + DL + ++ M I + C S + +
Sbjct: 114 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 173
Query: 79 TLQWLI 84
I
Sbjct: 174 VFDEAI 179
>d1uxya1 d.145.1.2 (A:3-200) Uridine
diphospho-N-Acetylenolpyruvylglucosamine reductase
(MurB), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 198
Score = 24.5 bits (52), Expect = 2.2
Identities = 9/81 (11%), Positives = 27/81 (33%), Gaps = 1/81 (1%)
Query: 12 ASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRMNLCAIQDRE-ICCYSISC 70
+L + G P+L+LG ++ D + + + I+ + + +
Sbjct: 22 EDEQQLLNAWQYATAEGQPVLILGEGSNVLFLEDYRGTVIINRIKGIEIHDEPDAWYLHV 81
Query: 71 KERDNIDITLQWLIAHSKSHT 91
+N +++ +
Sbjct: 82 GAGENWHRLVKYTLQEGMPGL 102
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 275
Score = 24.3 bits (52), Expect = 2.4
Identities = 8/30 (26%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 4 AADTDKLEASRNELHALIEKPQLIGIPILV 33
A+D+ +L+++R ++ L++ PI+V
Sbjct: 2 ASDSAQLKSAREDIKELLKTKF--CHPIMV 29
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 24.0 bits (51), Expect = 2.7
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 29 IPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84
+ +++GNK DL + + + + +++ S KE DN++ L
Sbjct: 111 VITVLVGNKIDLAERREVSQ---QRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 163
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 24.3 bits (51), Expect = 2.9
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 18 HALIEKPQLIGIPILVLGNKRDLPNALDE-KELIDRMNLCAIQDREICCYSISCKERDNI 76
+ + + IP +V NK D + E + + + + IS K DNI
Sbjct: 111 VEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNI 170
Query: 77 DITLQWLIAH 86
+ +
Sbjct: 171 ERLKNRIFEV 180
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 23.8 bits (50), Expect = 3.7
Identities = 7/57 (12%), Positives = 17/57 (29%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84
G+ + ++G + + + R + Y N+D Q +
Sbjct: 106 GLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVA 162
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 23.6 bits (50), Expect = 3.7
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 30 PILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84
+L++GNK D+ + + + + ++ I S K DN++ L
Sbjct: 109 QLLLVGNKSDMETRVVTADQGEAL----AKELGIPFIESSAKNDDNVNEIFFTLA 159
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 23.6 bits (49), Expect = 4.0
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 29 IPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84
IPI+++GNK DL + + S + N+ + ++
Sbjct: 112 IPIILVGNKSDLVRCREVSV---SEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 164
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 23.7 bits (50), Expect = 4.1
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 59 QDREICCYSISCKERDNIDITLQWLI 84
+ Y S K+ I+ L
Sbjct: 136 ESVGAKHYHTSAKQNKGIEELFLDLC 161
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 23.1 bits (48), Expect = 6.9
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 28 GIPILVLGNKRDLPNALDEKELIDRMNLCAIQDREICCYSISCKERDNIDITLQWLI 84
P +VLGNK DL N + I + S KE N++ Q +
Sbjct: 111 NFPFVVLGNKIDLENRQVATKRAQAWC---YSKNNIPYFETSAKEAINVEQAFQTIA 164
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 23.0 bits (48), Expect = 7.1
Identities = 5/31 (16%), Positives = 7/31 (22%)
Query: 59 QDREICCYSISCKERDNIDITLQWLIAHSKS 89
S K NI+ + S
Sbjct: 137 DSIHAIFVETSAKNAININELFIEISRRIPS 167
>d1ok8a2 f.10.1.1 (A:1-297) Envelope glycoprotein {Dengue virus
type 2 [TaxId: 11060]}
Length = 297
Score = 23.1 bits (50), Expect = 7.5
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 65 CYSISCKERDNIDITLQWLIAHSKSHTR 92
C + K + +D L A + R
Sbjct: 30 CVTTMAKNKPTLDFELIKTEAKQPATLR 57
>d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK
{Porphyromonas gingivalis [TaxId: 837]}
Length = 186
Score = 22.5 bits (48), Expect = 9.0
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 42 NALDEKELIDRMNLCAIQD-------REICCYSISCKERDNIDITLQWLIAHSKSHTR 92
N L +K +I ++ + R ICC + NI +T L+ H+R
Sbjct: 37 NGLQDKNVITQLYRASEAGVEIDLIVRGICCLVPDMPQSRNIRVT--RLVDMYLEHSR 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.404
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 329,468
Number of extensions: 13261
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 63
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)