BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2979
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 109/193 (56%), Gaps = 4/193 (2%)
Query: 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG 252
G+ ++DG +YAVGG G SVERY+P ++EW + PM V +LY G
Sbjct: 110 GVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVG 169
Query: 253 GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNR 312
G + + + + Y P+ N+W+ + PM RSGA +C L +CIY GG+ + N
Sbjct: 170 G--FDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQ-DQLNS 226
Query: 313 VECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372
VE Y + TW + +PM+ R GI V GKIYVLGG +G + DS+ECYD D+D+W
Sbjct: 227 VERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDG-HTFLDSVECYDPDSDTWS 285
Query: 373 IMSHLPSARSWLG 385
++ + S RS +G
Sbjct: 286 EVTRMTSGRSGVG 298
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
Query: 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG 252
G+A+L+ +YAVGG+DG+ RL+S E Y P +NEW I PM + V +Y G
Sbjct: 157 GVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAG 216
Query: 253 GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNR 312
G + D + V+RY+ + W +APM RS I IYVLGG+ T +
Sbjct: 217 G--YDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTF-LDS 273
Query: 313 VECYHIAENTWEYKSPMKEKRYRPGIAV 340
VECY +TW + M R G+AV
Sbjct: 274 VECYDPDSDTWSEVTRMTSGRSGVGVAV 301
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 6/191 (3%)
Query: 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILE-D 258
+Y GG+ L +E Y+P+ W + +++ + A G+LY GG D
Sbjct: 20 LIYTAGGYFRQ-SLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 78
Query: 259 GD-GIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317
G+ + YNP NQW A M +PR+ + +D IY +GG H +++ VE Y
Sbjct: 79 GNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSS-VERYE 137
Query: 318 IAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHL 377
+ W +PM +R G+AV++ +Y +GG +G + +S ECY + + W +++ +
Sbjct: 138 PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL-NSAECYYPERNEWRMITPM 196
Query: 378 PSARSWLG-CV 387
+ RS G CV
Sbjct: 197 NTIRSGAGVCV 207
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 7/147 (4%)
Query: 247 MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHAS 306
++Y GG + + ++ YNP W LA + +PRSG A C + +Y +GG + S
Sbjct: 20 LIYTAGGYFRQS---LSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNS 76
Query: 307 TE---NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIEC 363
+ +++ ++CY+ N W + M R R G+ VIDG IY +GG G +H S+E
Sbjct: 77 PDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHSSVER 135
Query: 364 YDVDNDSWEIMSHLPSARSWLGCVPLQ 390
Y+ + D W +++ + + R +G L
Sbjct: 136 YEPERDEWHLVAPMLTRRIGVGVAVLN 162
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 19/190 (10%)
Query: 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGL----------VVSGRNTIY 161
I AVGG + SVE + + W ++ P + G+ V G +
Sbjct: 118 IYAVGGSHGCIHHSSVERYEPERDEWHLVA--PMLTRRIGVGVAVLNRLLYAVGGFDGTN 175
Query: 162 CLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDP 221
L+ + Y + +++ + +++ +G+ +L +YA GG+DG +L+SVERYD
Sbjct: 176 RLNSAECYYPERNEWRMITPMNTIRSG---AGVCVLHNCIYAAGGYDGQDQLNSVERYDV 232
Query: 222 TKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAP 280
W+++ PM+ ++ + H+G +YV GG DG ++ V+ Y+P + W ++
Sbjct: 233 ETETWTFVAPMRHHRSALGITVHQGKIYVLGGY---DGHTFLDSVECYDPDSDTWSEVTR 289
Query: 281 MLIPRSGAAI 290
M RSG +
Sbjct: 290 MTSGRSGVGV 299
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 52/140 (37%), Gaps = 45/140 (32%)
Query: 96 ITPRTKPRKSAGSI---NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGL 152
ITP R AG N I A GG D + L SVE + V+T+ W
Sbjct: 193 ITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW--------------- 237
Query: 153 VVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCR 212
+VA H GI + G +Y +GG+DG
Sbjct: 238 ----------------TFVAPMRHH-----------RSALGITVHQGKIYVLGGYDGHTF 270
Query: 213 LDSVERYDPTKNEWSYIEPM 232
LDSVE YDP + WS + M
Sbjct: 271 LDSVECYDPDSDTWSEVTRM 290
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 145 bits (365), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 109/193 (56%), Gaps = 4/193 (2%)
Query: 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG 252
G+ ++DG +YAVGG G SVERY+P ++EW + PM V +LY G
Sbjct: 109 GVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVG 168
Query: 253 GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNR 312
G + + + + Y P+ N+W+ + PM RSGA +C L +CIY GG+ + N
Sbjct: 169 G--FDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQ-DQLNS 225
Query: 313 VECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372
VE Y + TW + +PM+ R GI V GKIYVLGG +G + DS+ECYD D+D+W
Sbjct: 226 VERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDG-HTFLDSVECYDPDSDTWS 284
Query: 373 IMSHLPSARSWLG 385
++ + S RS +G
Sbjct: 285 EVTRMTSGRSGVG 297
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
Query: 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG 252
G+A+L+ +YAVGG+DG+ RL+S E Y P +NEW I PM + V +Y G
Sbjct: 156 GVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAG 215
Query: 253 GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNR 312
G + D + V+RY+ + W +APM RS I IYVLGG+ T +
Sbjct: 216 G--YDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTF-LDS 272
Query: 313 VECYHIAENTWEYKSPMKEKRYRPGIAV 340
VECY +TW + M R G+AV
Sbjct: 273 VECYDPDSDTWSEVTRMTSGRSGVGVAV 300
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 6/191 (3%)
Query: 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILE-D 258
+Y GG+ L +E Y+P+ W + +++ + A G+LY GG D
Sbjct: 19 LIYTAGGYFRQ-SLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 77
Query: 259 GDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317
G+ + YNP NQW A M +PR+ + +D IY +GG H +++ VE Y
Sbjct: 78 GNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSS-VERYE 136
Query: 318 IAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHL 377
+ W +PM +R G+AV++ +Y +GG +G + +S ECY + + W +++ +
Sbjct: 137 PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL-NSAECYYPERNEWRMITPM 195
Query: 378 PSARSWLG-CV 387
+ RS G CV
Sbjct: 196 NTIRSGAGVCV 206
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 7/147 (4%)
Query: 247 MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHAS 306
++Y GG + + ++ YNP W LA + +PRSG A C + +Y +GG + S
Sbjct: 19 LIYTAGGYFRQS---LSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNS 75
Query: 307 TE---NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIEC 363
+ +++ ++CY+ N W + M R R G+ VIDG IY +GG G +H S+E
Sbjct: 76 PDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHSSVER 134
Query: 364 YDVDNDSWEIMSHLPSARSWLGCVPLQ 390
Y+ + D W +++ + + R +G L
Sbjct: 135 YEPERDEWHLVAPMLTRRIGVGVAVLN 161
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 19/190 (10%)
Query: 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGL----------VVSGRNTIY 161
I AVGG + SVE + + W ++ P + G+ V G +
Sbjct: 117 IYAVGGSHGCIHHSSVERYEPERDEWHLVA--PMLTRRIGVGVAVLNRLLYAVGGFDGTN 174
Query: 162 CLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDP 221
L+ + Y + +++ + +++ +G+ +L +YA GG+DG +L+SVERYD
Sbjct: 175 RLNSAECYYPERNEWRMITPMNTIRSG---AGVCVLHNCIYAAGGYDGQDQLNSVERYDV 231
Query: 222 TKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAP 280
W+++ PM+ ++ + H+G +YV GG DG ++ V+ Y+P + W ++
Sbjct: 232 ETETWTFVAPMRHHRSALGITVHQGKIYVLGGY---DGHTFLDSVECYDPDSDTWSEVTR 288
Query: 281 MLIPRSGAAI 290
M RSG +
Sbjct: 289 MTSGRSGVGV 298
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 52/140 (37%), Gaps = 45/140 (32%)
Query: 96 ITPRTKPRKSAGSI---NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGL 152
ITP R AG N I A GG D + L SVE + V+T+ W
Sbjct: 192 ITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW--------------- 236
Query: 153 VVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCR 212
+VA H GI + G +Y +GG+DG
Sbjct: 237 ----------------TFVAPMRHH-----------RSALGITVHQGKIYVLGGYDGHTF 269
Query: 213 LDSVERYDPTKNEWSYIEPM 232
LDSVE YDP + WS + M
Sbjct: 270 LDSVECYDPDSDTWSEVTRM 289
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 109/193 (56%), Gaps = 4/193 (2%)
Query: 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG 252
G+ ++DG +YAVGG G +SVERY+P ++EW + PM V +LY G
Sbjct: 117 GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVG 176
Query: 253 GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNR 312
G + + + + Y P+ N+W+ + M RSGA +C L +CIY GG+ + N
Sbjct: 177 G--FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ-DQLNS 233
Query: 313 VECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372
VE Y + TW + +PMK +R GI V G+IYVLGG +G + DS+ECYD D D+W
Sbjct: 234 VERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHT-FLDSVECYDPDTDTWS 292
Query: 373 IMSHLPSARSWLG 385
++ + S RS +G
Sbjct: 293 EVTRMTSGRSGVG 305
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG 252
G+A+L+ +YAVGG+DG+ RL+S E Y P +NEW I M + V +Y G
Sbjct: 164 GVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAG 223
Query: 253 GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNR 312
G + D + V+RY+ + W +APM RS I IYVLGG+ T +
Sbjct: 224 G--YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTF-LDS 280
Query: 313 VECYHIAENTWEYKSPMKEKRYRPGIAV 340
VECY +TW + M R G+AV
Sbjct: 281 VECYDPDTDTWSEVTRMTSGRSGVGVAV 308
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 5/193 (2%)
Query: 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILE-D 258
+Y GG+ L +E Y+P+ W + +++ + A G+LY GG D
Sbjct: 27 LIYTAGGYFRQS-LSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 85
Query: 259 GD-GIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317
G+ + YNP NQW APM +PR+ + +D IY +GG H + N VE Y
Sbjct: 86 GNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHH-NSVERYE 144
Query: 318 IAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHL 377
+ W +PM +R G+AV++ +Y +GG +G + +S ECY + + W +++ +
Sbjct: 145 PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL-NSAECYYPERNEWRMITAM 203
Query: 378 PSARSWLGCVPLQ 390
+ RS G L
Sbjct: 204 NTIRSGAGVCVLH 216
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 22/207 (10%)
Query: 98 PRTKPRKSAGSINV---IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGL-- 152
P + PR G + I AVGG + SVE + + W ++ P + G+
Sbjct: 108 PMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA--PMLTRRIGVGV 165
Query: 153 --------VVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAV 204
V G + L+ + Y + +++ ++ +++ +G+ +L +YA
Sbjct: 166 AVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSG---AGVCVLHNCIYAA 222
Query: 205 GGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IE 263
GG+DG +L+SVERYD W+++ PMK ++ + H+G +YV GG DG ++
Sbjct: 223 GGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGG---YDGHTFLD 279
Query: 264 QVQRYNPKVNQWQDLAPMLIPRSGAAI 290
V+ Y+P + W ++ M RSG +
Sbjct: 280 SVECYDPDTDTWSEVTRMTSGRSGVGV 306
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 282 LIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI 341
L+PR + IY GG+ ++ + +E Y+ ++ TW + ++ R V+
Sbjct: 13 LVPRGSHMAPKVGRLIYTAGGYF--RQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVV 70
Query: 342 DGKIYVLGGEEGW-DGYHDS--IECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQF 396
G +Y +GG DG DS ++CY+ P W C P+ + +++
Sbjct: 71 GGLLYAVGGRNNSPDGNTDSSALDCYN------------PMTNQWSPCAPMSVPRNRI 116
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 109/193 (56%), Gaps = 4/193 (2%)
Query: 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG 252
G+ ++DG +YAVGG G +SVERY+P ++EW + PM V +LY G
Sbjct: 116 GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVG 175
Query: 253 GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNR 312
G + + + + Y P+ N+W+ + M RSGA +C L +CIY GG+ + N
Sbjct: 176 G--FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ-DQLNS 232
Query: 313 VECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372
VE Y + TW + +PMK +R GI V G+IYVLGG +G + DS+ECYD D D+W
Sbjct: 233 VERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHT-FLDSVECYDPDTDTWS 291
Query: 373 IMSHLPSARSWLG 385
++ + S RS +G
Sbjct: 292 EVTRMTSGRSGVG 304
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG 252
G+A+L+ +YAVGG+DG+ RL+S E Y P +NEW I M + V +Y G
Sbjct: 163 GVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAG 222
Query: 253 GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNR 312
G + D + V+RY+ + W +APM RS I IYVLGG+ T +
Sbjct: 223 G--YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTF-LDS 279
Query: 313 VECYHIAENTWEYKSPMKEKRYRPGIAV 340
VECY +TW + M R G+AV
Sbjct: 280 VECYDPDTDTWSEVTRMTSGRSGVGVAV 307
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 5/193 (2%)
Query: 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILE-D 258
+Y GG+ L +E Y+P+ W + +++ + A G+LY GG D
Sbjct: 26 LIYTAGGYFRQS-LSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 84
Query: 259 GD-GIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317
G+ + YNP NQW APM +PR+ + +D IY +GG H + N VE Y
Sbjct: 85 GNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHH-NSVERYE 143
Query: 318 IAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHL 377
+ W +PM +R G+AV++ +Y +GG +G + +S ECY + + W +++ +
Sbjct: 144 PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL-NSAECYYPERNEWRMITAM 202
Query: 378 PSARSWLGCVPLQ 390
+ RS G L
Sbjct: 203 NTIRSGAGVCVLH 215
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 22/207 (10%)
Query: 98 PRTKPRKSAGSINV---IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGL-- 152
P + PR G + I AVGG + SVE + + W ++ P + G+
Sbjct: 107 PMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA--PMLTRRIGVGV 164
Query: 153 --------VVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAV 204
V G + L+ + Y + +++ ++ +++ +G+ +L +YA
Sbjct: 165 AVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSG---AGVCVLHNCIYAA 221
Query: 205 GGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IE 263
GG+DG +L+SVERYD W+++ PMK ++ + H+G +YV GG DG ++
Sbjct: 222 GGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGG---YDGHTFLD 278
Query: 264 QVQRYNPKVNQWQDLAPMLIPRSGAAI 290
V+ Y+P + W ++ M RSG +
Sbjct: 279 SVECYDPDTDTWSEVTRMTSGRSGVGV 305
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 282 LIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI 341
L+PR G+ + IY GG+ ++ + +E Y+ ++ TW + ++ R V+
Sbjct: 13 LVPR-GSHAPKVGRLIYTAGGYF--RQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVV 69
Query: 342 DGKIYVLGGEEGW-DGYHDS--IECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQF 396
G +Y +GG DG DS ++CY+ P W C P+ + +++
Sbjct: 70 GGLLYAVGGRNNSPDGNTDSSALDCYN------------PMTNQWSPCAPMSVPRNRI 115
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 105/193 (54%), Gaps = 4/193 (2%)
Query: 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG 252
G+ ++DG +YAVGG G +SVERY+P ++EW + P V +LY G
Sbjct: 116 GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAVG 175
Query: 253 GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNR 312
G + + + + Y P+ N+W+ + RSGA +C L +CIY GG+ + N
Sbjct: 176 G--FDGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQ-DQLNS 232
Query: 313 VECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372
VE Y + TW + +P K +R GI V G+IYVLGG +G + DS+ECYD D D+W
Sbjct: 233 VERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHT-FLDSVECYDPDTDTWS 291
Query: 373 IMSHLPSARSWLG 385
++ S RS +G
Sbjct: 292 EVTRXTSGRSGVG 304
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
Query: 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG 252
G+A+L+ +YAVGG+DG+ RL+S E Y P +NEW I + V +Y G
Sbjct: 163 GVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAG 222
Query: 253 GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNR 312
G + D + V+RY+ + W +AP RS I IYVLGG+ T +
Sbjct: 223 G--YDGQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTF-LDS 279
Query: 313 VECYHIAENTWEYKSPMKEKRYRPGIAV 340
VECY +TW + R G+AV
Sbjct: 280 VECYDPDTDTWSEVTRXTSGRSGVGVAV 307
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 7/147 (4%)
Query: 247 MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHAS 306
++Y GG + + ++ YNP W LA + +PRSG A C + +Y +GG + S
Sbjct: 26 LIYTAGGYFRQS---LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNS 82
Query: 307 TE---NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIEC 363
+ +++ ++CY+ N W +P R R G+ VIDG IY +GG G +H+S+E
Sbjct: 83 PDGNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVER 141
Query: 364 YDVDNDSWEIMSHLPSARSWLGCVPLQ 390
Y+ + D W +++ + R +G L
Sbjct: 142 YEPERDEWHLVAPXLTRRIGVGVAVLN 168
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 5/193 (2%)
Query: 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILE-D 258
+Y GG+ L +E Y+P+ W + +++ + A G+LY GG D
Sbjct: 26 LIYTAGGYFRQS-LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 84
Query: 259 GD-GIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317
G+ + YNP NQW AP +PR+ + +D IY +GG H + N VE Y
Sbjct: 85 GNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHH-NSVERYE 143
Query: 318 IAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHL 377
+ W +P +R G+AV++ +Y +GG +G + +S ECY + + W ++
Sbjct: 144 PERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRL-NSAECYYPERNEWRXITAX 202
Query: 378 PSARSWLGCVPLQ 390
+ RS G L
Sbjct: 203 NTIRSGAGVCVLH 215
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 192 SGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVT 251
+G+ +L +YA GG+DG +L+SVERYD W+++ P K ++ + H+G +YV
Sbjct: 209 AGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVL 268
Query: 252 GGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAI 290
GG DG ++ V+ Y+P + W ++ RSG +
Sbjct: 269 GG---YDGHTFLDSVECYDPDTDTWSEVTRXTSGRSGVGV 305
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 51/137 (37%), Gaps = 45/137 (32%)
Query: 96 ITPRTKPRKSAGSI---NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGL 152
IT R AG N I A GG D + L SVE + V+T+ W
Sbjct: 199 ITAXNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW--------------- 243
Query: 153 VVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCR 212
+VA H+ GI + G +Y +GG+DG
Sbjct: 244 ----------------TFVAPXKHR-----------RSALGITVHQGRIYVLGGYDGHTF 276
Query: 213 LDSVERYDPTKNEWSYI 229
LDSVE YDP + WS +
Sbjct: 277 LDSVECYDPDTDTWSEV 293
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 148/294 (50%), Gaps = 17/294 (5%)
Query: 98 PRTKPRKSAGSINVIIAVGG-EDDKVVLRSVEGFCVKTKVWKTLSCLP------FAISKH 150
PRT+ R G+ V++ VGG + + VE + KT+ W L + ++S H
Sbjct: 5 PRTRAR--LGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLH 62
Query: 151 G--LVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWD 208
V+ G + L V+ + A + +S+ + ++G L +Y GG+D
Sbjct: 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFD 122
Query: 209 GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGI-EQVQR 267
GS R S+ERYDP ++WS + M+ A +V G++Y GG DG I V++
Sbjct: 123 GSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGG---YDGLNILNSVEK 179
Query: 268 YNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKS 327
Y+P W ++ PM RSGA + L+ IYV+GG+ T + + VE Y+I ++W +
Sbjct: 180 YDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG-TAHLSSVEAYNIRTDSWTTVT 238
Query: 328 PMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSAR 381
M R G V+ G++Y + G +G + SIECYD DSWE+++ + + R
Sbjct: 239 SMTTPRCYVGATVLRGRLYAIAGYDG-NSLLSSIECYDPIIDSWEVVTSMGTQR 291
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 96/193 (49%), Gaps = 7/193 (3%)
Query: 201 VYAVGGWDGSCRLDSVERYDPTKNE---WSYIEPMKLAVTSPAVVAHEGMLYVTGGAILE 257
+Y +GG+DG RL SVE D T +E W + PM + M+YV+GG +
Sbjct: 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGG--FD 122
Query: 258 DGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317
++RY+P ++QW L M R GA + IY LGG+ N VE Y
Sbjct: 123 GSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDG-LNILNSVEKYD 181
Query: 318 IAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHL 377
W +PM KR G+A+++ IYV+GG +G + S+E Y++ DSW ++ +
Sbjct: 182 PHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG-TAHLSSVEAYNIRTDSWTTVTSM 240
Query: 378 PSARSWLGCVPLQ 390
+ R ++G L+
Sbjct: 241 TTPRCYVGATVLR 253
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 9/184 (4%)
Query: 213 LDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDG----DGIEQVQRY 268
+D VE+YDP EWS++ + A V+ +YV GG DG +E +
Sbjct: 30 IDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGG---YDGRSRLSSVECLDYT 86
Query: 269 NPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP 328
+ W +APM + R A L IYV GG+ S +T+ +E Y + W
Sbjct: 87 ADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTS-MERYDPNIDQWSMLGD 145
Query: 329 MKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVP 388
M+ R G+ V G IY LGG +G + +S+E YD W ++ + + RS G
Sbjct: 146 MQTAREGAGLVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL 204
Query: 389 LQIH 392
L H
Sbjct: 205 LNDH 208
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 88/208 (42%), Gaps = 14/208 (6%)
Query: 96 ITPRTKPRKSAGSI---NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGL 152
+ P R AG+ ++I GG D S+E + W L + A GL
Sbjct: 96 VAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGL 155
Query: 153 VVSGRNTIYCLDIVDIVYVAASMHKILHSLGS------LKFDFDVSGIAMLDGFVYAVGG 206
VV+ IYCL D + + S+ K G + +G+A+L+ +Y VGG
Sbjct: 156 VVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGG 214
Query: 207 WDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGI-EQV 265
+DG+ L SVE Y+ + W+ + M G LY G DG+ + +
Sbjct: 215 FDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAG---YDGNSLLSSI 271
Query: 266 QRYNPKVNQWQDLAPMLIPRSGAAICAL 293
+ Y+P ++ W+ + M R A +C L
Sbjct: 272 ECYDPIIDSWEVVTSMGTQRCDAGVCVL 299
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 127 bits (320), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 145/299 (48%), Gaps = 15/299 (5%)
Query: 96 ITPRTKPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLV-- 153
++ RT+ R +++ VGG+ K + RSVE + K + W ++ LP + G+V
Sbjct: 2 MSVRTRLRTPMNLPKLMVVVGGQAPKAI-RSVECYDFKEERWHQVAELPSRRCRAGMVYM 60
Query: 154 ------VSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGW 207
V G N + VD + S+ +++ G A+L+G +YAVGG+
Sbjct: 61 AGLVFAVGGFNGSLRVRTVDSY---DPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGF 117
Query: 208 DGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQR 267
DGS L SVE Y+ NEW ++ PM +S V G+LY GG + + V+
Sbjct: 118 DGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVEC 177
Query: 268 YNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKS 327
YN N+W +A M RSGA + L++ +Y +GG H VE Y N W +
Sbjct: 178 YNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGG-HDGPLVRKSVEVYDPTTNAWRQVA 236
Query: 328 PMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH-LPSARSWLG 385
M R G+ ++G +YV+GG++G S+E Y+ D W ++S + + RS+ G
Sbjct: 237 DMNMCRRNAGVCAVNGLLYVVGGDDG-SCNLASVEYYNPTTDKWTVVSSCMSTGRSYAG 294
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 313 VECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372
VECY E W + + +R R G+ + G ++ +GG G +++ YD D W
Sbjct: 32 VECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNG-SLRVRTVDSYDPVKDQWT 90
Query: 373 IMSHLPSARSWLGCVPLQ 390
++++ RS LG L
Sbjct: 91 SVANMRDRRSTLGAAVLN 108
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 360 SIECYDVDNDSWEIMSHLPSARSWLGCV 387
S+ECYD + W ++ LPS R G V
Sbjct: 31 SVECYDFKEERWHQVAELPSRRCRAGMV 58
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 8/162 (4%)
Query: 193 GIAMLDGFVYAVGGWD--GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYV 250
G+ +D +Y V G D LDSV YDP +WS ++ + + V V++H GM+Y
Sbjct: 104 GLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYC 163
Query: 251 TGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTEN- 309
GG +D +V YNPK W+DLAPM PRS + I + GG TE+
Sbjct: 164 LGGKT-DDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGG---VTEDG 219
Query: 310 -TNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGG 350
+ VE + + N WE + ++R + + G +Y +GG
Sbjct: 220 LSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGG 261
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 7/204 (3%)
Query: 192 SGIAMLDGFVYAVGGW--DGSCRLDSVERY----DPTKNEWSYIEPMKLAVTSPAVVAHE 245
S I VY VGG D + ++ Y D +EW + P+ A + +
Sbjct: 50 SSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVD 109
Query: 246 GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHA 305
+YV G L+ ++ V Y+P +W ++ + I G + + + IY LGG
Sbjct: 110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTD 169
Query: 306 STENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYD 365
+ TNRV Y+ + W+ +PMK R G+A+ GKI + GG DG S+E +D
Sbjct: 170 DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTE-DGLSASVEAFD 228
Query: 366 VDNDSWEIMSHLPSARSWLGCVPL 389
+ + WE+M+ P RS + V L
Sbjct: 229 LKTNKWEVMTEFPQERSSISLVSL 252
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 11/156 (7%)
Query: 198 DGFVYAVGGW--DGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAI 255
+G +Y +GG D C + V Y+P K +W + PMK + V H+G + + GG +
Sbjct: 158 NGMIYCLGGKTDDKKCT-NRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGG-V 215
Query: 256 LEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGW------HASTEN 309
EDG V+ ++ K N+W+ + RS ++ +L +Y +GG+
Sbjct: 216 TEDGLS-ASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAP 274
Query: 310 TNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKI 345
T + + ++ E+ +KE RY G + + ++
Sbjct: 275 TEVNDIWKYEDDKKEWAGMLKEIRYASGASCLATRL 310
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 283 IPRSGAAICALDSCIYVLGGWHASTENTNR-VECYHI----AENTWEYKSPMKEKRYRPG 337
IPR+ ++I + +YV+GG + EN ++ ++ Y + W P+ R G
Sbjct: 45 IPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104
Query: 338 IAVIDGKIYVLGGEE-GWDGYHDSIECYDVDNDSWEIMSHLP 378
+ +D KIYV+ G++ + DS+ CYD W + +LP
Sbjct: 105 LGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP 146
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 17/205 (8%)
Query: 112 IIAVGGED--DKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL------ 163
I V G+D + L SV + W + LP + H V+S IYCL
Sbjct: 112 IYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHN-VISHNGMIYCLGGKTDD 170
Query: 164 -DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPT 222
+ V++ L +K + G+A+ G + GG SVE +D
Sbjct: 171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLK 230
Query: 223 KNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-------IEQVQRYNPKVNQW 275
N+W + +S ++V+ G LY GG + + + + +Y +W
Sbjct: 231 TNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW 290
Query: 276 QDLAPMLIPRSGAAICALDSCIYVL 300
+ + SGA+ A ++ L
Sbjct: 291 AGMLKEIRYASGASCLATRLNLFKL 315
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 12/187 (6%)
Query: 198 DGFVYAVGGWDGSCRLDSVER---YDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGA 254
D VY +GG +L ++R Y+ K+ W S A A EG +Y +GG+
Sbjct: 55 DNVVYILGG----SQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGS 110
Query: 255 ILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGW---HASTENTN 311
+ + + + Y+ + W ML R + + IYV GG + S N
Sbjct: 111 EVGN-SALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN 169
Query: 312 RVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371
E Y A TW PM E R G+ + KI+ +GG+ G G D++E YD+ + W
Sbjct: 170 SCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGL-DNVEYYDIKLNEW 228
Query: 372 EIMSHLP 378
+++S +P
Sbjct: 229 KMVSPMP 235
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 107/280 (38%), Gaps = 16/280 (5%)
Query: 100 TKPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNT 159
T+PR+ + + G + +S F K W + C PF + V N
Sbjct: 4 TRPRRKKHDYRIALFGGSQP-----QSCRYFNPKDYSWTDIRC-PFEKRRDAACVFWDNV 57
Query: 160 IYCLDIVDIVYVA-ASMHKILHSLGSLKFD----FDVSGIAMLDGFVYAVGGWD-GSCRL 213
+Y L + + + ++ K D +G +Y GG + G+ L
Sbjct: 58 VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSAL 117
Query: 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG--IEQVQRYNPK 271
E YD W M S +V G++YV GG++ + G + + Y+P
Sbjct: 118 YLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177
Query: 272 VNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKE 331
W +L PM+ R + + I+ +GG + VE Y I N W+ SPM
Sbjct: 178 TETWTELCPMIEARKNHGLVFVKDKIFAVGG-QNGLGGLDNVEYYDIKLNEWKMVSPMPW 236
Query: 332 KRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371
K A + +YVL G +G +E Y+ + D W
Sbjct: 237 KGVTVKCAAVGSIVYVLAGFQGVGRLGHILE-YNTETDKW 275
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 6/182 (3%)
Query: 209 GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY 268
G + S ++P W+ I A V + ++Y+ GG+ L I+++ Y
Sbjct: 19 GGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFP---IKRMDCY 75
Query: 269 NPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP 328
N + W PR A CA + IY GG ECY +W K
Sbjct: 76 NVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS 135
Query: 329 MKEKRYRPGIAVIDGKIYVLGGEEGWD---GYHDSIECYDVDNDSWEIMSHLPSARSWLG 385
M +R G+ +G IYV GG G + +S E YD ++W + + AR G
Sbjct: 136 MLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHG 195
Query: 386 CV 387
V
Sbjct: 196 LV 197
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 13/145 (8%)
Query: 193 GIAMLDGFVYAVGGWDG---SCR-LDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGML 248
G+ +G +Y GG G S R L+S E YDP W+ + PM A + +V + +
Sbjct: 144 GMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKI 203
Query: 249 YVTGGAILEDG-DGIEQVQRYNPKVNQWQDLAPMLIPRSGAAI--CALDSCIYVLGGWHA 305
+ GG ++G G++ V+ Y+ K+N+W+ ++PM P G + A+ S +YVL G+
Sbjct: 204 FAVGG---QNGLGGLDNVEYYDIKLNEWKMVSPM--PWKGVTVKCAAVGSIVYVLAGFQG 258
Query: 306 STENTNRVECYHIAENTWEYKSPMK 330
+ +E Y+ + W S ++
Sbjct: 259 VGRLGHILE-YNTETDKWVANSKVR 282
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 81/217 (37%), Gaps = 26/217 (11%)
Query: 97 TPRTKPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLV--- 153
TPR A + + G E L E + +T+ W T + HG+V
Sbjct: 90 TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEAN 149
Query: 154 -------------VSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGF 200
VSGR +++ V + L + G+ +
Sbjct: 150 GLIYVCGGSLGNNVSGR-------VLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDK 202
Query: 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGD 260
++AVGG +G LD+VE YD NEW + PM + A ++YV G +
Sbjct: 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAG--FQGVG 260
Query: 261 GIEQVQRYNPKVNQW-QDLAPMLIPRSGAAICALDSC 296
+ + YN + ++W + P + IC +D+C
Sbjct: 261 RLGHILEYNTETDKWVANSKVRAFPVTSCLICVVDTC 297
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 94 AHITPRTKPRKSAGSINV---IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKH 150
+ P + RK+ G + V I AVGG++ L +VE + +K WK +S +P+
Sbjct: 182 TELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW----K 237
Query: 151 GLVVSGRNTIYCLDIVDIVYVAASMHKI 178
G+ T+ C + IVYV A +
Sbjct: 238 GV------TVKCAAVGSIVYVLAGFQGV 259
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 201 VYAVGGW---DGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILE 257
+Y VGG DG LDSV YD +W +P+ V V++H ++YV GG
Sbjct: 101 IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKG-S 159
Query: 258 DGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317
D + ++ Y+PK +W++LAPM RS D I V G T T+ E Y
Sbjct: 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAG-VTDTGLTSSAEVYS 218
Query: 318 IAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGG 350
I +N W ++R + + G +Y +GG
Sbjct: 219 ITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGG 251
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 2/173 (1%)
Query: 218 RYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQ 276
++D +EW + P+ + +YV GG ++DG+ ++ V Y+ +W
Sbjct: 71 QFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG 130
Query: 277 DLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRP 336
+ P+ G + + +YV+GG + + N++ Y + W+ +PM+ R
Sbjct: 131 ESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLF 190
Query: 337 GIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPL 389
G V DG+I V G G S E Y + ++ W P RS L V L
Sbjct: 191 GATVHDGRIIVAAGVTD-TGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL 242
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 15/159 (9%)
Query: 200 FVYAVGGWDGSCR--LDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILE 257
VY +GG GS R L+ + YDP K EW + PM+ A + H+G + V G +
Sbjct: 150 LVYVIGG-KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAG--VT 206
Query: 258 DGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHA-STEN------- 309
D + Y+ N+W RS ++ +L +Y +GG+ TE+
Sbjct: 207 DTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTE 266
Query: 310 TNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVL 348
N + Y+ E WE ++E Y G + ++ VL
Sbjct: 267 LNDIWRYNEEEKKWE--GVLREIAYAAGATFLPVRLNVL 303
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 95/247 (38%), Gaps = 38/247 (15%)
Query: 70 KNNPQCAQLVEEAKLFHLLPDRRSAHITPRTKPRKSAG---SINVIIAVGG---EDDKVV 123
K +P A ++ L D + P PR G ++N I VGG +D +
Sbjct: 61 KEDPMSAYFLQFDHL-----DSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERC 115
Query: 124 LRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILH--- 180
L SV + + W LP+ VV G + +D+V ++ S K L+
Sbjct: 116 LDSVMCYDRLSFKWGESDPLPY-------VVYGHTVLSHMDLVYVIGGKGSDRKCLNKMC 168
Query: 181 ----------SLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE 230
L ++ + G + DG + G + S E Y T N+W+ E
Sbjct: 169 VYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE 228
Query: 231 PMKLAVTSPAVVAHEGMLYVTGG-AILEDGDG------IEQVQRYNPKVNQWQDLAPMLI 283
+S ++V+ G LY GG A LE G + + RYN + +W+ + +
Sbjct: 229 AFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREIA 288
Query: 284 PRSGAAI 290
+GA
Sbjct: 289 YAAGATF 295
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVLET 48
+L+G NE R CDV + V+G +FP HR VLAA S YFK L T
Sbjct: 22 ILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFT 66
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVLET 48
+L+G NE R CDV + V+G +FP HR VLAA S YFK L T
Sbjct: 12 ILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFT 56
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
Length = 124
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYF 43
VL N+ RK + CDVT+ V+G +F AHR VLAA S YF
Sbjct: 16 VLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYF 55
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYF 43
VL N+ RK + CDVT+ V+G +F AHR VLAA S YF
Sbjct: 23 VLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYF 62
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYF 43
+L G N+ RK + CDVTL V+ +F AHR VLAA S YF
Sbjct: 19 ILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYF 58
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL 46
+L NE R +CDV++ V G F AHR VLAASS YF+ L
Sbjct: 20 ILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDL 62
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL 46
VL N+ R+ CD T VDG F AH+ VLAA S YFK+L
Sbjct: 12 VLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKML 54
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL 46
VL N+ R+ CD T VDG F AH+ VLAA S YFK+L
Sbjct: 14 VLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKML 56
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM I
Length = 124
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVLETI 49
+L NE R + FCDVT+ V+ KF AH+ +L+ASS YF L ++
Sbjct: 20 LLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSV 65
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVLETI 49
+L NE R + FCDVT+ V+ KF AH+ +L+ASS YF L ++
Sbjct: 18 LLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSV 63
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At
2.8a Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At
3.1a Resolution
Length = 297
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 9 NEARKNNEFCDVTLCVDGS---KFPAHRVVLAASSPYFKVL 46
NE R+ FCD+TLC G+ +F AHR VLAA++ YF L
Sbjct: 42 NEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPL 82
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 42 YFK-VLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLL 88
YF+ + + +RL Q+ P +L V+ ++ NN C +LV +A H L
Sbjct: 241 YFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAVERHAL 288
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human
Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human
Klhl11
Length = 279
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 9 NEARKNNEFCDVTLCVDGS---KFPAHRVVLAASSPYFKVL 46
NE R+ FCD+TLC G+ +F AHR VLAA++ YF L
Sbjct: 24 NEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPL 64
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain
Of Human Gigaxonin
Length = 144
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKV 45
+L + R+ + FCD L +DG + P + +LAA+SPY +
Sbjct: 34 LLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRT 75
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKV 45
+L + R+ + FCD L +DG + P + +LAA+SPY +
Sbjct: 18 LLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRT 59
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 13 KNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL 46
+N+ F D LCV G +F AH+ +LAA SP F +
Sbjct: 21 ENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAM 54
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKV 45
+L + R+ + FCD L +DG + P + +LAA+SPY +
Sbjct: 18 LLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRT 59
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 13 KNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL 46
+N+ F D LCV G +F AH+ +LAA SP F +
Sbjct: 170 ENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAM 203
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL 46
+L N+ R CDV + VD +F AHR VLA +S F++L
Sbjct: 14 LLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEIL 56
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL 46
+L N+ R CDV + VD +F AHR VLA +S F++L
Sbjct: 15 LLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEIL 57
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 13 KNNEFCDVTLCVDGSKFPAHRVVLAASSPYF 43
+N+ F D LCV G +F AH+ +LAA SP F
Sbjct: 30 ENSRFTDCCLCVAGQEFQAHKAILAARSPVF 60
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The
Krueppel Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL 46
VL N+ R+ ++CD TL V G F AH VLA S +F+ L
Sbjct: 11 VLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSL 53
>pdb|2CN3|A Chain A, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN3|B Chain B, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
Length = 737
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 240 AVVAHEGMLYVTGGAILE--DGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAIC 291
V+A GMLY+T G DG+G QV ++N + +W D+ P+ S C
Sbjct: 249 GVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFC 302
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
VL N+ R+ ++CD TL V G F AH VLA S +F+
Sbjct: 12 VLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ 52
>pdb|2CN2|A Chain A, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|B Chain B, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|C Chain C, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|D Chain D, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
Length = 737
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 240 AVVAHEGMLYVTGGAILE--DGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAIC 291
V+A G LY+T G DG+G QV ++N + +W D+ P+ S C
Sbjct: 249 GVLASNGXLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFC 302
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYF 43
+L N+ R+ CD T+ + +F AHR VLA+ S YF
Sbjct: 9 LLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYF 48
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 245 EGMLYVTGGAILEDGDGIEQV----QRYNPKVNQWQDL---APMLIPRSGAAICALDSCI 297
+G LYV GG I ++ +G+ QV +YNPK N W L AP +G +
Sbjct: 65 DGNLYVFGG-IGKNSEGLTQVFNDVHKYNPKTNSWVKLXSHAPX--GXAGHVTFVHNGKA 121
Query: 298 YVLGG 302
YV GG
Sbjct: 122 YVTGG 126
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 271 KVNQWQDLAPM-LIPRSGAAICALDSCIYVLGGWHASTENT----NRVECYHIAENTWEY 325
K +W LA PR A +D +YV GG ++E N V Y+ N+W
Sbjct: 41 KDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW-- 98
Query: 326 KSPMKEKRYRP-GIA-----VIDGKIYVLGG 350
+K + P G A V +GK YV GG
Sbjct: 99 ---VKLXSHAPXGXAGHVTFVHNGKAYVTGG 126
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 192 SGIAMLDGFVYAVGG-WDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLY 249
S M DG V+ +GG W G + E Y P+ W+ + K+ +P + A + LY
Sbjct: 274 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV---NPMLTADKQGLY 329
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 297 IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR-YRPGIAVIDGKIYVLGGEEGWD 355
I V GG + + Y + ++W M+ R Y+ + DG+++ +GG W
Sbjct: 239 IVVTGG-----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGS--WS 291
Query: 356 G--YHDSIECYDVDNDSWEIMSHLPSAR 381
G + + E Y + +W + LP+A+
Sbjct: 292 GGVFEKNGEVYSPSSKTW---TSLPNAK 316
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 192 SGIAMLDGFVYAVGG-WDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLY 249
S M DG V+ +GG W G + E Y P+ W+ + K+ +P + A + LY
Sbjct: 291 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV---NPMLTADKQGLY 346
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 297 IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR-YRPGIAVIDGKIYVLGGEEGWD 355
I V GG + + Y + ++W M+ R Y+ + DG+++ +GG W
Sbjct: 256 IVVTGG-----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGS--WS 308
Query: 356 G--YHDSIECYDVDNDSWEIMSHLPSAR 381
G + + E Y + +W + LP+A+
Sbjct: 309 GGVFEKNGEVYSPSSKTW---TSLPNAK 333
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 192 SGIAMLDGFVYAVGG-WDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLY 249
S M DG V+ +GG W G + E Y P+ W+ + K+ +P + A + LY
Sbjct: 274 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV---NPMLTADKQGLY 329
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 297 IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR-YRPGIAVIDGKIYVLGGEEGWD 355
I V GG + + Y + ++W M+ R Y+ + DG+++ +GG W
Sbjct: 239 IVVTGG-----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGS--WS 291
Query: 356 G--YHDSIECYDVDNDSWEIMSHLPSAR 381
G + + E Y + +W + LP+A+
Sbjct: 292 GGVFEKNGEVYSPSSKTW---TSLPNAK 316
>pdb|3M5B|A Chain A, Crystal Structure Of The Btb Domain From FazfZBTB32
pdb|3M5B|B Chain B, Crystal Structure Of The Btb Domain From FazfZBTB32
Length = 119
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 11 ARKNNEFCDVTLCVDGSKFPAHRVVLAASS 40
AR CD + V +FPAH +VLA S
Sbjct: 24 ARLRPALCDTLITVGSQEFPAHSLVLAGVS 53
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 297 IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR-YRPGIAVIDGKIYVLGGEEGWD 355
I V GG + + Y + ++W M+ R Y+ + DG+++ +GG
Sbjct: 239 IVVTGG-----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSHSGG 293
Query: 356 GYHDSIECYDVDNDSWEIMSHLPSAR 381
+ + E Y + +W + LP+A+
Sbjct: 294 VFEKNGEVYSPSSKTW---TSLPNAK 316
>pdb|3M84|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis
pdb|3M84|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis
pdb|3QTY|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis Complexed With
Pyrophosphate
pdb|3QTY|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis Complexed With
Pyrophosphate
Length = 350
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 119 DDKVVLRSVEGFCVKTKV------WKTLSCLPFAISKHGLVVSGRNTIYCLDIV 166
DD V+++S++G KTKV ++ L F+ + + +VV G I LD V
Sbjct: 59 DDPVLVQSIDGVGTKTKVAVXCGKFENLGYDLFSAATNDIVVXGAKPITFLDYV 112
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 297 IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR-YRPGIAVIDGKIYVLGGEEGWD 355
I V GG + + Y + ++W M+ R Y+ + DG+++ +GG
Sbjct: 239 IVVTGG-----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSGSGG 293
Query: 356 GYHDSIECYDVDNDSWEIMSHLPSAR 381
+ + E Y + +W + LP+A+
Sbjct: 294 VFEKNGEVYSPSSKTW---TSLPNAK 316
>pdb|3A0F|A Chain A, The Crystal Structure Of Geotrichum Sp. M128 Xyloglucanase
Length = 763
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 216 VERYDPTKNEWSYIEPMKL-AVTSPAVVAHE--------GMLYVTGGAILE---DGDGIE 263
V YDPT W +I P + A T PA ++ G+ G ++ D +G +
Sbjct: 277 VWSYDPTNGNWKHITPSREGANTYPAPTGNKKVVPGGWNGISVGNGDTVVVSTLDANGED 336
Query: 264 QVQRYNPKVNQWQDLAPMLIP 284
V N W+DL + P
Sbjct: 337 SVYLSRDAGNSWKDLGKLTTP 357
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 297 IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR-YRPGIAVIDGKIYVLGGEEGWD 355
I V GG + + Y + ++W M+ R Y+ + DG+++ +GG
Sbjct: 261 IVVTGG-----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGG 315
Query: 356 GYHDSIECYDVDNDSWEIMSHLPSAR 381
+ + E Y + +W + LP+A+
Sbjct: 316 VFEKNGEVYSPSSKTW---TSLPNAK 338
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 297 IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR-YRPGIAVIDGKIYVLGGEEGWD 355
I V GG + + Y + ++W M+ R Y+ + DG+++ +GG
Sbjct: 239 IVVTGG-----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGG 293
Query: 356 GYHDSIECYDVDNDSWEIMSHLPSAR 381
+ + E Y + +W + LP+A+
Sbjct: 294 VFEKNGEVYSPSSKTW---TSLPNAK 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,960,857
Number of Sequences: 62578
Number of extensions: 558141
Number of successful extensions: 1282
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1029
Number of HSP's gapped (non-prelim): 110
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)