Query psy2979
Match_columns 400
No_of_seqs 271 out of 2840
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 22:26:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441|consensus 100.0 2.6E-74 5.6E-79 552.3 39.8 336 47-390 224-569 (571)
2 PHA02713 hypothetical protein; 100.0 1.5E-64 3.3E-69 487.5 36.4 370 2-379 10-545 (557)
3 PHA02790 Kelch-like protein; P 100.0 1E-54 2.3E-59 413.8 27.3 344 5-374 10-477 (480)
4 PHA03098 kelch-like protein; P 100.0 2.6E-53 5.7E-58 413.3 36.9 265 110-381 251-525 (534)
5 KOG4441|consensus 100.0 2.3E-50 5E-55 387.0 19.7 391 2-398 21-530 (571)
6 PHA02713 hypothetical protein; 100.0 3.7E-44 8.1E-49 345.9 28.2 229 167-398 272-520 (557)
7 PLN02193 nitrile-specifier pro 100.0 8.5E-41 1.8E-45 317.6 35.8 284 110-400 121-452 (470)
8 PLN02153 epithiospecifier prot 100.0 4.1E-41 8.9E-46 309.0 31.4 266 133-399 5-322 (341)
9 PHA02790 Kelch-like protein; P 100.0 3.9E-41 8.4E-46 320.8 30.0 299 2-327 146-478 (480)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 7.9E-41 1.7E-45 308.3 28.8 255 140-398 1-329 (346)
11 TIGR03548 mutarot_permut cycli 100.0 6.5E-39 1.4E-43 292.4 29.1 246 146-398 3-311 (323)
12 PRK14131 N-acetylneuraminic ac 100.0 7.7E-39 1.7E-43 297.0 27.5 262 136-398 18-351 (376)
13 PLN02153 epithiospecifier prot 100.0 1.3E-37 2.9E-42 285.8 31.5 259 109-368 32-340 (341)
14 TIGR03548 mutarot_permut cycli 100.0 9.6E-38 2.1E-42 284.7 28.5 240 108-351 12-312 (323)
15 TIGR03547 muta_rot_YjhT mutatr 100.0 1.2E-37 2.6E-42 287.1 29.3 249 109-365 17-344 (346)
16 PRK14131 N-acetylneuraminic ac 100.0 5.9E-37 1.3E-41 284.4 31.8 260 108-373 37-374 (376)
17 PLN02193 nitrile-specifier pro 100.0 1.5E-36 3.1E-41 288.7 32.4 257 108-368 174-469 (470)
18 PHA03098 kelch-like protein; P 100.0 1.9E-36 4E-41 295.1 26.4 372 14-398 6-495 (534)
19 KOG4693|consensus 100.0 2.3E-34 5E-39 236.0 21.7 260 136-399 3-311 (392)
20 KOG4693|consensus 100.0 2.5E-31 5.5E-36 218.2 20.3 244 107-351 21-311 (392)
21 KOG0379|consensus 100.0 5.9E-28 1.3E-32 229.0 25.5 248 142-394 56-332 (482)
22 KOG0379|consensus 100.0 4E-27 8.8E-32 223.3 22.7 213 184-399 56-284 (482)
23 KOG1230|consensus 99.9 5.9E-25 1.3E-29 191.2 18.4 232 142-374 62-347 (521)
24 KOG1230|consensus 99.9 1.3E-24 2.7E-29 189.2 19.8 217 183-399 61-315 (521)
25 KOG4152|consensus 99.9 1.1E-23 2.3E-28 187.9 18.5 241 106-352 39-342 (830)
26 KOG4152|consensus 99.9 2.6E-23 5.7E-28 185.5 18.2 259 135-398 17-340 (830)
27 COG3055 Uncharacterized protei 99.9 1.3E-19 2.9E-24 156.0 20.6 257 139-399 29-357 (381)
28 COG3055 Uncharacterized protei 99.8 7.5E-17 1.6E-21 139.2 19.1 236 127-366 60-373 (381)
29 KOG2437|consensus 99.4 3.4E-13 7.3E-18 121.2 4.9 181 186-367 258-471 (723)
30 PF13964 Kelch_6: Kelch motif 99.4 1.7E-12 3.6E-17 83.0 6.6 49 332-381 1-50 (50)
31 PF13964 Kelch_6: Kelch motif 99.3 2.7E-12 5.8E-17 82.0 6.2 49 188-236 1-50 (50)
32 PF01344 Kelch_1: Kelch motif; 99.2 3.7E-11 8E-16 75.8 4.2 46 188-233 1-47 (47)
33 PF01344 Kelch_1: Kelch motif; 99.2 5.5E-11 1.2E-15 75.0 4.7 47 332-378 1-47 (47)
34 PF13415 Kelch_3: Galactose ox 99.1 1.2E-10 2.5E-15 73.9 5.9 48 342-389 1-49 (49)
35 KOG2437|consensus 99.1 3.7E-11 8E-16 108.3 4.3 175 222-399 237-454 (723)
36 PF00651 BTB: BTB/POZ domain; 99.1 1.2E-10 2.6E-15 88.7 6.2 82 8-89 1-98 (111)
37 PF07646 Kelch_2: Kelch motif; 99.0 1.5E-09 3.3E-14 68.8 6.3 47 332-378 1-49 (49)
38 smart00612 Kelch Kelch domain. 99.0 7E-10 1.5E-14 69.9 4.7 47 344-391 1-47 (47)
39 PF13415 Kelch_3: Galactose ox 99.0 1.8E-09 3.8E-14 68.5 5.8 47 198-244 1-49 (49)
40 smart00612 Kelch Kelch domain. 98.9 1.6E-09 3.4E-14 68.3 5.0 47 200-246 1-47 (47)
41 PF13418 Kelch_4: Galactose ox 98.9 1.1E-09 2.4E-14 69.5 4.3 48 332-379 1-49 (49)
42 PF07646 Kelch_2: Kelch motif; 98.9 3.3E-09 7.2E-14 67.2 6.1 46 188-233 1-49 (49)
43 PF07250 Glyoxal_oxid_N: Glyox 98.9 1.6E-07 3.4E-12 80.3 16.3 148 168-331 47-210 (243)
44 PF13418 Kelch_4: Galactose ox 98.8 3.5E-09 7.6E-14 67.2 4.1 48 284-331 1-49 (49)
45 PF07250 Glyoxal_oxid_N: Glyox 98.7 5E-07 1.1E-11 77.2 15.2 149 215-380 47-211 (243)
46 TIGR01640 F_box_assoc_1 F-box 98.7 1.1E-05 2.3E-10 70.0 22.9 193 167-369 14-230 (230)
47 KOG4350|consensus 98.6 5.9E-08 1.3E-12 85.7 5.1 69 2-70 29-110 (620)
48 smart00225 BTB Broad-Complex, 98.6 6.5E-08 1.4E-12 70.1 4.7 71 19-89 1-84 (90)
49 PRK11138 outer membrane biogen 98.6 0.00033 7.2E-09 66.0 30.2 230 125-395 130-381 (394)
50 PRK11138 outer membrane biogen 98.6 0.00036 7.8E-09 65.8 30.2 221 110-373 70-320 (394)
51 PLN02772 guanylate kinase 98.5 1.2E-06 2.6E-11 79.6 10.9 83 283-368 23-109 (398)
52 PLN02772 guanylate kinase 98.5 1.2E-06 2.7E-11 79.5 10.9 82 234-321 23-110 (398)
53 PF13854 Kelch_5: Kelch motif 98.5 4.3E-07 9.2E-12 55.2 5.2 41 329-369 1-42 (42)
54 TIGR01640 F_box_assoc_1 F-box 98.4 4.6E-05 1E-09 66.0 19.4 177 214-397 14-213 (230)
55 TIGR03300 assembly_YfgL outer 98.4 0.0021 4.6E-08 60.2 30.4 229 125-394 115-365 (377)
56 PF13854 Kelch_5: Kelch motif 98.3 1.3E-06 2.7E-11 53.1 5.1 40 185-224 1-42 (42)
57 PF13360 PQQ_2: PQQ-like domai 98.3 0.0017 3.6E-08 56.4 28.8 210 125-372 3-237 (238)
58 TIGR03300 assembly_YfgL outer 98.2 0.0044 9.6E-08 58.0 30.4 209 125-373 75-305 (377)
59 PF08450 SGL: SMP-30/Gluconola 98.2 0.00078 1.7E-08 59.0 20.8 202 156-390 11-233 (246)
60 KOG2075|consensus 97.8 3.3E-05 7.2E-10 70.4 5.5 83 3-85 100-200 (521)
61 PF13360 PQQ_2: PQQ-like domai 97.8 0.022 4.7E-07 49.4 24.9 174 167-373 3-199 (238)
62 PF07893 DUF1668: Protein of u 97.7 0.0019 4.2E-08 59.2 15.6 122 244-379 75-221 (342)
63 PF07893 DUF1668: Protein of u 97.7 0.0027 5.9E-08 58.2 16.3 121 152-280 72-216 (342)
64 PF03089 RAG2: Recombination a 97.6 0.0066 1.4E-07 52.1 16.4 164 182-347 81-280 (337)
65 PF05096 Glu_cyclase_2: Glutam 97.6 0.0018 3.9E-08 55.8 12.3 160 190-376 46-215 (264)
66 PF03089 RAG2: Recombination a 97.5 0.0098 2.1E-07 51.1 15.8 150 248-399 41-227 (337)
67 COG4257 Vgb Streptogramin lyas 97.5 0.051 1.1E-06 46.8 19.9 235 124-391 82-326 (353)
68 TIGR03866 PQQ_ABC_repeats PQQ- 97.4 0.085 1.8E-06 47.2 26.4 249 112-397 3-265 (300)
69 PF08450 SGL: SMP-30/Gluconola 97.3 0.089 1.9E-06 46.0 21.3 198 125-348 22-243 (246)
70 PF12768 Rax2: Cortical protei 97.3 0.0044 9.4E-08 54.7 12.2 109 262-376 15-130 (281)
71 KOG4591|consensus 97.2 0.00043 9.2E-09 55.7 4.4 86 2-87 51-151 (280)
72 smart00284 OLF Olfactomedin-li 97.0 0.17 3.6E-06 43.9 18.4 185 175-380 19-220 (255)
73 cd00094 HX Hemopexin-like repe 96.9 0.14 3.1E-06 42.9 17.1 145 193-370 11-178 (194)
74 PRK13684 Ycf48-like protein; P 96.9 0.33 7.2E-06 44.5 23.9 233 135-399 76-321 (334)
75 PF02191 OLF: Olfactomedin-lik 96.9 0.11 2.4E-06 45.2 16.5 165 198-380 30-215 (250)
76 PRK11028 6-phosphogluconolacto 96.9 0.35 7.6E-06 44.3 26.5 248 125-397 12-290 (330)
77 PF05096 Glu_cyclase_2: Glutam 96.9 0.04 8.6E-07 47.7 13.2 110 240-369 49-159 (264)
78 KOG0310|consensus 96.8 0.24 5.2E-06 45.8 18.1 215 156-400 79-299 (487)
79 cd00200 WD40 WD40 domain, foun 96.7 0.35 7.6E-06 42.1 25.9 180 160-369 66-251 (289)
80 PRK13684 Ycf48-like protein; P 96.6 0.54 1.2E-05 43.2 25.0 210 135-375 35-252 (334)
81 KOG2055|consensus 96.6 0.066 1.4E-06 49.2 13.2 147 198-369 224-376 (514)
82 PF12768 Rax2: Cortical protei 96.5 0.069 1.5E-06 47.3 12.6 109 213-328 15-130 (281)
83 PF14870 PSII_BNR: Photosynthe 96.5 0.59 1.3E-05 41.9 21.4 238 133-400 4-252 (302)
84 PRK04792 tolB translocation pr 96.5 0.88 1.9E-05 43.7 26.9 190 166-374 241-431 (448)
85 PF06433 Me-amine-dh_H: Methyl 96.4 0.28 6.1E-06 44.2 15.8 227 125-370 17-280 (342)
86 TIGR02658 TTQ_MADH_Hv methylam 96.4 0.77 1.7E-05 42.1 23.4 112 110-228 13-142 (352)
87 KOG2048|consensus 96.4 1.1 2.3E-05 43.6 22.6 248 123-399 45-308 (691)
88 PRK04792 tolB translocation pr 96.3 1.1 2.5E-05 43.0 21.3 146 214-375 242-390 (448)
89 TIGR03866 PQQ_ABC_repeats PQQ- 96.3 0.76 1.6E-05 40.9 22.2 175 166-370 10-190 (300)
90 PF02191 OLF: Olfactomedin-lik 96.3 0.7 1.5E-05 40.3 19.7 181 110-301 31-237 (250)
91 PF03178 CPSF_A: CPSF A subuni 96.2 0.19 4.1E-06 45.9 14.2 119 263-394 62-187 (321)
92 PF03178 CPSF_A: CPSF A subuni 96.1 0.4 8.7E-06 43.8 16.2 122 167-301 62-190 (321)
93 PF10282 Lactonase: Lactonase, 96.1 0.98 2.1E-05 41.7 18.8 208 169-397 17-261 (345)
94 cd00200 WD40 WD40 domain, foun 96.1 0.85 1.8E-05 39.6 21.4 143 198-370 62-210 (289)
95 KOG0783|consensus 96.1 0.0056 1.2E-07 60.0 3.7 64 5-68 542-634 (1267)
96 PRK00178 tolB translocation pr 96.0 1.5 3.3E-05 41.8 26.0 185 166-369 222-408 (430)
97 PRK00178 tolB translocation pr 96.0 1.5 3.4E-05 41.8 21.6 146 214-376 223-372 (430)
98 PRK05137 tolB translocation pr 95.9 1.6 3.5E-05 41.7 21.4 146 214-374 226-373 (435)
99 KOG2055|consensus 95.9 0.92 2E-05 42.0 16.7 107 198-323 268-378 (514)
100 PRK05137 tolB translocation pr 95.9 1.7 3.6E-05 41.7 27.5 232 124-375 181-420 (435)
101 COG1520 FOG: WD40-like repeat 95.8 1.6 3.6E-05 40.7 22.1 201 153-375 65-278 (370)
102 KOG0289|consensus 95.6 0.99 2.1E-05 41.5 15.4 139 236-397 348-492 (506)
103 KOG0310|consensus 95.5 1.3 2.9E-05 41.2 16.3 174 164-369 45-227 (487)
104 TIGR02800 propeller_TolB tol-p 95.5 2.3 5E-05 40.3 20.9 146 214-375 214-362 (417)
105 PRK04922 tolB translocation pr 95.5 2.5 5.5E-05 40.4 20.8 147 213-375 227-376 (433)
106 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.3 0.75 1.6E-05 45.1 15.2 119 240-374 64-198 (527)
107 PF10282 Lactonase: Lactonase, 95.3 2.4 5.2E-05 39.2 25.0 258 114-397 3-308 (345)
108 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.3 1.2 2.5E-05 43.8 16.3 116 195-325 66-197 (527)
109 PRK04922 tolB translocation pr 95.3 2.9 6.3E-05 40.0 26.5 184 166-370 227-414 (433)
110 PF14583 Pectate_lyase22: Olig 95.2 1.5 3.3E-05 40.4 15.8 243 123-373 58-334 (386)
111 PF06433 Me-amine-dh_H: Methyl 95.2 2 4.4E-05 38.8 16.2 228 121-370 63-323 (342)
112 smart00284 OLF Olfactomedin-li 95.2 1.9 4.1E-05 37.5 19.8 183 110-301 35-242 (255)
113 COG4257 Vgb Streptogramin lyas 95.1 2.1 4.5E-05 37.3 16.1 194 126-342 125-325 (353)
114 PLN02919 haloacid dehalogenase 95.1 6 0.00013 42.5 29.0 196 150-370 627-891 (1057)
115 cd00094 HX Hemopexin-like repe 94.9 1.9 4.1E-05 36.1 17.0 145 151-322 11-178 (194)
116 cd00216 PQQ_DH Dehydrogenases 94.9 4 8.7E-05 39.7 28.3 249 125-397 120-455 (488)
117 PF14870 PSII_BNR: Photosynthe 94.9 2.8 6.1E-05 37.7 25.7 235 135-398 47-293 (302)
118 PRK03629 tolB translocation pr 94.8 3.8 8.3E-05 39.1 22.5 148 214-376 223-372 (429)
119 PRK11028 6-phosphogluconolacto 94.8 3.2 7E-05 37.9 28.9 240 125-388 57-327 (330)
120 PLN02919 haloacid dehalogenase 94.7 7.3 0.00016 41.8 26.8 195 156-375 579-841 (1057)
121 TIGR02800 propeller_TolB tol-p 94.7 4 8.7E-05 38.6 23.8 183 167-368 214-398 (417)
122 KOG0783|consensus 94.6 0.015 3.2E-07 57.2 1.3 46 18-64 713-771 (1267)
123 COG1520 FOG: WD40-like repeat 94.6 3.9 8.6E-05 38.1 24.5 225 126-366 79-319 (370)
124 cd00216 PQQ_DH Dehydrogenases 94.5 5.2 0.00011 38.9 28.7 236 125-374 71-383 (488)
125 PF02239 Cytochrom_D1: Cytochr 94.4 4.3 9.4E-05 37.8 18.3 260 110-398 6-286 (369)
126 KOG3545|consensus 94.2 3.3 7.1E-05 35.5 14.8 183 168-380 11-214 (249)
127 PF07707 BACK: BTB And C-termi 93.8 0.0038 8.3E-08 46.3 -3.6 63 2-64 22-103 (103)
128 PRK02889 tolB translocation pr 93.6 7.1 0.00015 37.3 21.0 188 167-375 176-368 (427)
129 PTZ00421 coronin; Provisional 93.4 8.3 0.00018 37.5 23.6 153 199-374 138-297 (493)
130 PF08268 FBA_3: F-box associat 93.4 1.4 2.9E-05 34.1 10.1 83 291-375 2-88 (129)
131 PLN00181 protein SPA1-RELATED; 92.9 13 0.00029 38.7 22.6 175 164-369 552-740 (793)
132 PLN00033 photosystem II stabil 92.9 8.3 0.00018 36.3 25.6 196 135-351 75-300 (398)
133 PRK03629 tolB translocation pr 92.8 9.3 0.0002 36.5 27.6 243 110-374 165-413 (429)
134 KOG2321|consensus 92.8 1.2 2.5E-05 42.6 10.1 105 245-370 145-261 (703)
135 KOG2838|consensus 92.5 0.14 3.1E-06 43.7 3.5 69 2-70 115-198 (401)
136 PF09910 DUF2139: Uncharacteri 92.4 7.4 0.00016 34.4 14.6 160 228-399 27-222 (339)
137 KOG1036|consensus 91.9 8.4 0.00018 34.0 17.1 163 160-347 28-203 (323)
138 PRK02889 tolB translocation pr 91.8 12 0.00026 35.7 24.3 223 124-368 175-404 (427)
139 PLN00033 photosystem II stabil 91.7 12 0.00026 35.3 25.4 195 150-375 140-364 (398)
140 COG3823 Glutamine cyclotransfe 91.7 6.8 0.00015 32.8 12.0 165 190-379 47-219 (262)
141 KOG0278|consensus 91.4 5.5 0.00012 34.2 11.5 119 214-351 165-287 (334)
142 KOG0289|consensus 91.4 12 0.00026 34.8 17.5 123 198-342 358-485 (506)
143 KOG0316|consensus 91.3 8.4 0.00018 32.8 15.5 106 198-323 70-177 (307)
144 smart00875 BACK BTB And C-term 91.3 0.08 1.7E-06 38.8 0.7 60 2-61 22-99 (101)
145 PRK04043 tolB translocation pr 91.3 14 0.0003 35.2 21.9 148 214-376 213-366 (419)
146 PLN00181 protein SPA1-RELATED; 91.0 17 0.00037 37.9 17.5 140 199-368 545-691 (793)
147 PF08268 FBA_3: F-box associat 90.9 3.3 7.1E-05 31.9 9.5 82 243-327 3-88 (129)
148 PLN03215 ascorbic acid mannose 90.7 13 0.00029 34.4 14.4 97 223-330 189-305 (373)
149 COG4946 Uncharacterized protei 90.5 16 0.00034 34.5 21.9 139 125-278 287-438 (668)
150 TIGR02658 TTQ_MADH_Hv methylam 90.1 15 0.00034 33.8 21.8 241 110-370 58-333 (352)
151 PF09910 DUF2139: Uncharacteri 89.9 13 0.00029 32.9 19.8 132 181-323 27-185 (339)
152 PF02897 Peptidase_S9_N: Proly 89.7 18 0.0004 34.2 22.5 237 121-375 146-412 (414)
153 KOG0291|consensus 89.5 25 0.00054 35.3 21.6 134 198-351 361-498 (893)
154 PTZ00421 coronin; Provisional 89.0 24 0.00051 34.4 19.1 151 198-369 87-247 (493)
155 KOG0278|consensus 88.6 15 0.00032 31.7 13.5 145 109-270 147-298 (334)
156 KOG1036|consensus 87.4 20 0.00043 31.8 15.0 155 215-395 36-203 (323)
157 PLN03215 ascorbic acid mannose 87.1 12 0.00025 34.8 11.5 98 272-379 189-306 (373)
158 KOG4682|consensus 87.1 0.39 8.5E-06 43.7 2.0 83 10-93 62-161 (488)
159 KOG0643|consensus 86.3 22 0.00047 31.0 17.5 167 123-305 72-254 (327)
160 PRK04043 tolB translocation pr 86.2 32 0.00068 32.8 22.2 192 166-375 212-408 (419)
161 PRK10115 protease 2; Provision 86.0 44 0.00095 34.2 26.8 240 121-377 149-404 (686)
162 PRK01742 tolB translocation pr 85.5 35 0.00075 32.6 19.9 139 214-375 228-369 (429)
163 PTZ00420 coronin; Provisional 85.0 43 0.00093 33.3 19.4 150 200-375 139-301 (568)
164 KOG0296|consensus 85.0 30 0.00066 31.5 15.4 143 198-370 75-223 (399)
165 KOG0649|consensus 84.4 26 0.00055 30.2 14.3 149 177-350 99-263 (325)
166 TIGR03074 PQQ_membr_DH membran 84.4 54 0.0012 33.9 20.3 164 194-373 190-430 (764)
167 PF12217 End_beta_propel: Cata 84.1 27 0.00059 30.3 15.1 150 150-302 78-257 (367)
168 TIGR03074 PQQ_membr_DH membran 84.1 56 0.0012 33.8 23.9 35 150-185 188-224 (764)
169 KOG2321|consensus 83.9 10 0.00022 36.6 9.5 104 160-274 148-261 (703)
170 PTZ00420 coronin; Provisional 83.3 51 0.0011 32.8 18.1 106 246-368 138-249 (568)
171 KOG2048|consensus 82.5 54 0.0012 32.5 20.7 197 164-399 44-264 (691)
172 KOG0315|consensus 81.9 33 0.00072 29.6 23.5 256 110-400 10-278 (311)
173 KOG0640|consensus 81.7 33 0.00072 30.6 11.2 135 246-399 184-324 (430)
174 COG4447 Uncharacterized protei 81.6 37 0.0008 29.9 13.7 254 110-398 55-321 (339)
175 KOG0316|consensus 81.0 35 0.00075 29.3 13.0 135 214-370 39-176 (307)
176 PF02897 Peptidase_S9_N: Proly 81.0 51 0.0011 31.2 19.9 147 167-326 252-411 (414)
177 PF02239 Cytochrom_D1: Cytochr 80.8 49 0.0011 30.9 15.7 186 160-372 8-207 (369)
178 KOG0291|consensus 76.9 89 0.0019 31.7 22.4 151 199-374 319-473 (893)
179 COG4946 Uncharacterized protei 76.0 74 0.0016 30.3 18.8 187 153-374 232-438 (668)
180 KOG0281|consensus 76.0 62 0.0013 29.4 11.7 109 189-320 320-429 (499)
181 KOG0315|consensus 75.8 52 0.0011 28.5 20.9 135 214-370 146-291 (311)
182 PRK01742 tolB translocation pr 75.2 78 0.0017 30.2 24.9 181 167-374 228-411 (429)
183 KOG3881|consensus 74.1 74 0.0016 29.4 12.2 146 199-368 161-321 (412)
184 PF13088 BNR_2: BNR repeat-lik 72.6 66 0.0014 28.2 13.3 188 198-391 58-270 (275)
185 KOG0286|consensus 71.7 73 0.0016 28.3 18.1 107 198-323 108-221 (343)
186 KOG0266|consensus 70.2 1.1E+02 0.0023 29.6 19.4 180 164-369 222-411 (456)
187 KOG0281|consensus 69.8 68 0.0015 29.2 10.1 126 198-351 246-378 (499)
188 KOG0279|consensus 69.7 79 0.0017 27.9 15.9 143 198-369 74-224 (315)
189 KOG3545|consensus 69.4 75 0.0016 27.5 12.7 180 110-301 31-236 (249)
190 PF14781 BBS2_N: Ciliary BBSom 69.3 51 0.0011 25.6 9.7 66 295-374 64-134 (136)
191 PF14781 BBS2_N: Ciliary BBSom 68.2 54 0.0012 25.4 8.4 66 246-326 64-134 (136)
192 PF13570 PQQ_3: PQQ-like domai 67.4 21 0.00045 20.7 4.7 25 337-368 16-40 (40)
193 PF12217 End_beta_propel: Cata 66.7 88 0.0019 27.3 15.0 158 190-351 76-258 (367)
194 KOG1332|consensus 66.4 87 0.0019 27.1 10.0 56 266-328 238-296 (299)
195 PF15525 DUF4652: Domain of un 64.9 79 0.0017 26.1 10.1 70 310-379 87-160 (200)
196 PF08662 eIF2A: Eukaryotic tra 63.9 85 0.0018 26.1 9.9 109 245-369 71-181 (194)
197 KOG3863|consensus 63.3 0.76 1.6E-05 44.5 -3.2 36 4-44 1-36 (604)
198 KOG1963|consensus 62.3 1.9E+02 0.0042 29.7 17.3 96 262-368 431-539 (792)
199 KOG0647|consensus 62.1 1.2E+02 0.0026 27.2 18.0 171 110-304 40-219 (347)
200 COG4880 Secreted protein conta 60.5 1.5E+02 0.0033 28.0 10.9 43 210-252 402-444 (603)
201 KOG1898|consensus 59.9 2.4E+02 0.0053 30.1 14.9 170 213-397 852-1036(1205)
202 KOG0266|consensus 59.8 1.7E+02 0.0037 28.2 17.4 106 198-323 214-322 (456)
203 PF13088 BNR_2: BNR repeat-lik 59.7 1.2E+02 0.0026 26.5 19.2 167 176-347 88-275 (275)
204 PF07734 FBA_1: F-box associat 59.1 93 0.002 25.0 11.4 82 195-279 2-91 (164)
205 KOG0646|consensus 59.1 75 0.0016 30.0 8.7 135 239-400 85-237 (476)
206 COG3386 Gluconolactonase [Carb 59.0 1.4E+02 0.0031 27.0 22.8 191 164-379 44-254 (307)
207 KOG1898|consensus 58.9 2.5E+02 0.0055 29.9 15.3 113 216-342 914-1029(1205)
208 COG0823 TolB Periplasmic compo 58.5 1.7E+02 0.0038 27.9 12.6 148 214-375 218-367 (425)
209 KOG2838|consensus 57.5 2.4 5.2E-05 36.5 -0.9 19 28-46 262-280 (401)
210 KOG1897|consensus 56.9 2.6E+02 0.0057 29.5 15.9 123 215-351 808-932 (1096)
211 KOG0279|consensus 56.5 1.4E+02 0.0031 26.4 18.3 136 164-322 124-265 (315)
212 KOG2716|consensus 54.5 9.2 0.0002 32.7 2.0 74 20-93 7-96 (230)
213 PF02214 BTB_2: BTB/POZ domain 54.3 52 0.0011 23.4 5.8 69 20-88 1-87 (94)
214 KOG0274|consensus 53.6 2.4E+02 0.0051 28.0 17.4 140 160-322 344-485 (537)
215 KOG3881|consensus 52.3 1E+02 0.0022 28.5 8.2 93 124-225 225-323 (412)
216 COG3823 Glutamine cyclotransfe 52.0 1.3E+02 0.0028 25.5 8.1 100 239-351 49-149 (262)
217 COG3386 Gluconolactonase [Carb 51.4 1.9E+02 0.0041 26.2 21.5 206 125-351 47-276 (307)
218 COG4447 Uncharacterized protei 51.4 1.8E+02 0.0038 25.9 13.1 214 126-368 106-333 (339)
219 KOG0649|consensus 51.3 1.6E+02 0.0036 25.5 14.1 112 225-351 100-226 (325)
220 PRK02888 nitrous-oxide reducta 49.4 2.9E+02 0.0063 27.8 11.6 41 359-399 296-339 (635)
221 PRK10115 protease 2; Provision 48.5 3.2E+02 0.007 28.1 23.8 152 164-328 244-403 (686)
222 KOG0299|consensus 48.4 2.5E+02 0.0054 26.7 16.9 208 109-344 213-438 (479)
223 PF08950 DUF1861: Protein of u 48.2 1E+02 0.0022 27.2 7.3 60 291-351 33-95 (298)
224 KOG0772|consensus 47.5 2.8E+02 0.006 27.0 16.3 209 155-389 225-465 (641)
225 KOG4378|consensus 46.9 2.8E+02 0.006 26.8 12.7 89 215-320 188-281 (673)
226 PF03931 Skp1_POZ: Skp1 family 45.1 44 0.00096 21.8 3.8 44 20-64 3-55 (62)
227 TIGR03032 conserved hypothetic 44.3 2.5E+02 0.0054 25.6 10.9 97 144-254 148-260 (335)
228 KOG0647|consensus 42.8 2.5E+02 0.0055 25.2 13.6 104 198-322 83-187 (347)
229 PF05787 DUF839: Bacterial pro 42.5 3.5E+02 0.0076 26.7 11.4 80 312-397 439-518 (524)
230 PF14583 Pectate_lyase22: Olig 41.5 3.1E+02 0.0066 25.8 17.8 87 214-305 216-304 (386)
231 PF11768 DUF3312: Protein of u 41.2 2.7E+02 0.0059 27.3 9.7 106 245-369 218-331 (545)
232 KOG0308|consensus 40.2 4E+02 0.0087 26.8 11.5 66 244-322 128-204 (735)
233 COG0823 TolB Periplasmic compo 39.9 3.4E+02 0.0075 25.9 13.5 107 213-328 261-368 (425)
234 PRK01029 tolB translocation pr 39.7 3.4E+02 0.0075 25.9 26.6 62 310-376 350-412 (428)
235 KOG0265|consensus 39.1 2.9E+02 0.0063 24.8 10.4 58 198-276 58-125 (338)
236 PF08662 eIF2A: Eukaryotic tra 38.5 2.3E+02 0.005 23.5 11.2 92 198-302 71-162 (194)
237 PF07734 FBA_1: F-box associat 38.3 2.1E+02 0.0045 22.9 9.1 83 291-376 2-92 (164)
238 KOG0646|consensus 37.9 3.7E+02 0.008 25.7 14.0 56 150-210 85-146 (476)
239 PRK02888 nitrous-oxide reducta 37.4 4.5E+02 0.0098 26.6 14.6 53 311-369 296-353 (635)
240 KOG0318|consensus 37.0 4.1E+02 0.0089 25.9 22.8 184 151-368 368-561 (603)
241 PF03088 Str_synth: Strictosid 36.8 43 0.00093 23.9 2.9 38 357-397 35-73 (89)
242 KOG4649|consensus 35.9 3.1E+02 0.0067 24.2 12.7 143 231-397 6-153 (354)
243 KOG0639|consensus 34.5 1.8E+02 0.0038 28.1 7.1 93 244-351 475-571 (705)
244 KOG0308|consensus 33.0 5.2E+02 0.011 26.0 11.1 93 264-369 96-203 (735)
245 KOG0282|consensus 33.0 2E+02 0.0043 27.5 7.2 76 294-384 269-358 (503)
246 KOG0294|consensus 32.5 3.8E+02 0.0083 24.3 13.6 27 194-225 48-74 (362)
247 PF02772 S-AdoMet_synt_M: S-ad 32.0 29 0.00064 26.3 1.5 54 1-64 30-93 (120)
248 KOG1517|consensus 32.0 6.9E+02 0.015 27.1 12.5 58 323-390 1154-1215(1387)
249 KOG4378|consensus 31.8 4.9E+02 0.011 25.3 13.6 96 247-368 178-281 (673)
250 PF08950 DUF1861: Protein of u 31.7 1.9E+02 0.0041 25.6 6.4 57 197-254 35-95 (298)
251 PF14298 DUF4374: Domain of un 30.4 4.9E+02 0.011 24.9 13.4 129 242-372 282-429 (435)
252 KOG1240|consensus 28.9 8.2E+02 0.018 27.0 11.6 195 189-400 1100-1324(1431)
253 KOG0640|consensus 28.7 4.5E+02 0.0097 23.8 8.8 65 245-323 227-295 (430)
254 PF05666 Fels1: Fels-1 Prophag 28.6 29 0.00064 21.1 0.8 17 13-29 15-33 (45)
255 KOG0318|consensus 28.1 5.8E+02 0.013 25.0 24.0 64 294-369 454-519 (603)
256 TIGR03032 conserved hypothetic 27.7 1.7E+02 0.0038 26.5 5.7 97 263-374 185-300 (335)
257 smart00564 PQQ beta-propeller 27.2 1.1E+02 0.0024 16.3 4.6 23 341-370 5-27 (33)
258 KOG1897|consensus 26.1 8.4E+02 0.018 26.2 18.4 166 213-396 749-929 (1096)
259 KOG0643|consensus 25.9 4.7E+02 0.01 23.2 14.9 100 164-273 71-179 (327)
260 KOG0268|consensus 25.9 3.4E+02 0.0073 25.1 7.1 53 246-307 284-338 (433)
261 KOG0973|consensus 25.8 8.3E+02 0.018 26.0 11.7 112 198-321 24-161 (942)
262 PF13970 DUF4221: Domain of un 25.3 4.4E+02 0.0094 24.1 8.3 58 310-374 177-248 (333)
263 KOG0285|consensus 25.3 5.5E+02 0.012 23.8 17.3 205 125-369 173-391 (460)
264 KOG0305|consensus 24.7 6.6E+02 0.014 24.5 15.6 131 165-318 195-330 (484)
265 PF11134 Phage_stabilise: Phag 24.4 3.5E+02 0.0075 25.8 7.2 138 240-398 187-351 (469)
266 COG4880 Secreted protein conta 24.1 6.4E+02 0.014 24.1 14.5 55 121-176 402-458 (603)
267 PF12904 Collagen_bind_2: Puta 23.2 1.8E+02 0.0039 21.0 4.2 18 167-184 49-66 (93)
268 PF00780 CNH: CNH domain; Int 22.8 5.1E+02 0.011 22.5 15.4 141 169-333 118-269 (275)
269 KOG0286|consensus 22.7 5.7E+02 0.012 23.0 23.8 173 164-369 116-305 (343)
270 TIGR02604 Piru_Ver_Nterm putat 22.5 6.3E+02 0.014 23.4 14.7 121 264-397 48-200 (367)
271 COG2706 3-carboxymuconate cycl 22.3 6.2E+02 0.013 23.3 23.6 242 109-370 1-277 (346)
272 KOG2714|consensus 22.1 93 0.002 29.3 3.1 72 20-91 13-101 (465)
273 KOG0285|consensus 22.0 6.4E+02 0.014 23.4 14.6 100 198-322 162-268 (460)
274 KOG2111|consensus 21.8 6.1E+02 0.013 23.1 8.8 56 294-349 58-119 (346)
275 KOG0263|consensus 21.6 8.8E+02 0.019 24.8 10.8 61 245-320 588-650 (707)
276 PF07433 DUF1513: Protein of u 21.3 6.2E+02 0.013 22.9 25.0 239 146-399 4-275 (305)
277 KOG1517|consensus 20.7 1.1E+03 0.024 25.7 14.1 78 179-271 1154-1239(1387)
278 KOG1963|consensus 20.5 6.6E+02 0.014 26.1 8.7 95 214-320 432-539 (792)
No 1
>KOG4441|consensus
Probab=100.00 E-value=2.6e-74 Score=552.27 Aligned_cols=336 Identities=35% Similarity=0.656 Sum_probs=315.6
Q ss_pred ceeecCCCCHHHHHHHhhhcccccCchhHHHHHHHHHhcCCCcccccccCCCCcCcCCCCCCCcEEEEEeccCC-Ccccc
Q psy2979 47 ETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTKPRKSAGSINVIIAVGGEDD-KVVLR 125 (400)
Q Consensus 47 ~~vrl~~l~~~~l~~~i~~~~l~~~~~~c~~~l~~a~~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~~gg~~~-~~~~~ 125 (400)
++|||+++++.+|.+.+..++++..++.|++++.+|.++|..+..+..++++++++|. ...+.++++||... ....+
T Consensus 224 ~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~--~~~~~l~~vGG~~~~~~~~~ 301 (571)
T KOG4441|consen 224 EAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRR--SVSGKLVAVGGYNRQGQSLR 301 (571)
T ss_pred HhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCc--CCCCeEEEECCCCCCCcccc
Confidence 6899999999999999999999999999999999999999999988888999999996 23489999999985 67889
Q ss_pred eEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE---e----ecCEEEEEECCCCCeEEccCCCCcceeeeEEEEC
Q psy2979 126 SVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL---D----IVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLD 198 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~---~----~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~ 198 (400)
.++.||+.++.|..+++||.+|..+++++++|. ||++ . ..+++++|||.+++|..+++|..+|..+++++++
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~-lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~ 380 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGK-LYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD 380 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEECCE-EEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEEC
Confidence 999999999999999999999999999999999 9999 2 5578999999999999999999999999999999
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCC--cceEEEEeCCCCcee
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG--IEQVQRYNPKVNQWQ 276 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~v~~yd~~~~~W~ 276 (400)
|.||++||.++...++++|+|||.+++|+.+++|+.+|+++++++++++||++||. ++.. ++++++|||.+++|+
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~---~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGG---DGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCc---CCCccccceEEEEcCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999998 5544 899999999999999
Q ss_pred eccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCC
Q psy2979 277 DLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG 356 (400)
Q Consensus 277 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~ 356 (400)
.+++|+.+|.++++++++++||++||.++... ..+|++|||++++|+.+++|+.+|..++++++++++|++||+ ++..
T Consensus 458 ~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~-~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~-~~~~ 535 (571)
T KOG4441|consen 458 LIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSA-LSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGF-DGNN 535 (571)
T ss_pred ecCCcccccccceEEEECCEEEEECCccCCCc-cceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecc-cCcc
Confidence 99999999999999999999999999998555 788999999999999999999999999999999999999998 8888
Q ss_pred CCCeEEEEECCCCcEEEecCCCCCCCceeeEEEc
Q psy2979 357 YHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 390 (400)
Q Consensus 357 ~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 390 (400)
..+.|++|||.+|+|+...++...|...+++++.
T Consensus 536 ~l~~ve~ydp~~d~W~~~~~~~~~~~~~~~~~~~ 569 (571)
T KOG4441|consen 536 NLNTVECYDPETDTWTEVTEPESGRGGAGVAVIP 569 (571)
T ss_pred ccceeEEcCCCCCceeeCCCccccccCcceEEec
Confidence 9999999999999999998877778777777764
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-64 Score=487.45 Aligned_cols=370 Identities=18% Similarity=0.261 Sum_probs=298.1
Q ss_pred hhHHHHHHHHHhcCceeceEEEEC-CeEEehhhHHHhhcCcccccc-----------ceeecCCCCHH---HHHHHhhhc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVD-GSKFPAHRVVLAASSPYFKVL-----------ETIRLPQLSPY---FLHDCVEQC 66 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~-~~~~~~hr~vLaa~s~yf~~m-----------~~vrl~~l~~~---~l~~~i~~~ 66 (400)
..++++|++||+++.||||+|.|+ +++|||||+||||+|+||++| +.|+|++++++ .|++++|++
T Consensus 10 ~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~ 89 (557)
T PHA02713 10 RRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNR 89 (557)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCC
Confidence 468999999999999999999997 899999999999999999998 24889999987 677899998
Q ss_pred ccccCchhHHHHHHHHHhcCCCcccccc----------------------------------------------------
Q psy2979 67 AIIKNNPQCAQLVEEAKLFHLLPDRRSA---------------------------------------------------- 94 (400)
Q Consensus 67 ~l~~~~~~c~~~l~~a~~~~~~~~~~~~---------------------------------------------------- 94 (400)
+| +.++.++++.+|..+|+....+.|
T Consensus 90 ~i--~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L 167 (557)
T PHA02713 90 HI--SSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKT 167 (557)
T ss_pred CC--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhC
Confidence 74 344455555554443211110000
Q ss_pred --------cCCCC-c-------------------------------CcCCC-----------------------------
Q psy2979 95 --------HITPR-T-------------------------------KPRKS----------------------------- 105 (400)
Q Consensus 95 --------~~~~~-~-------------------------------~~r~~----------------------------- 105 (400)
+.+.. . ..|..
T Consensus 168 ~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~~~~~ll~~VR~~~l~~~~~~~~~~~~~i~~~~~c~~~l~~a 247 (557)
T PHA02713 168 VFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITEEQLLCILSCIDIQNLDKKSRLLLYSNKTINMYPSCIQFLLDN 247 (557)
T ss_pred CHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHHHHHhhhHhhhhHhhcchhhhhhhcchHHHHhhHHHHHHHhhh
Confidence 00000 0 00000
Q ss_pred ------CCCCcEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEe-------ecCEEEEE
Q psy2979 106 ------AGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLD-------IVDIVYVA 172 (400)
Q Consensus 106 ------~~~~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~-------~~~~~~~y 172 (400)
......+++.||.. ......+++||+.+++|..++++|.++..++++++++. ||++. ..+.+++|
T Consensus 248 ~~~~~~~~r~~~l~~~~g~~-~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~-IYviGG~~~~~~~~~~v~~Y 325 (557)
T PHA02713 248 KQNRNIIPRQLCLVCHDTKY-NVCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNE-IIIAGGYNFNNPSLNKVYKI 325 (557)
T ss_pred hhhcccCCcceEEEEecCcc-ccCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCE-EEEEcCCCCCCCccceEEEE
Confidence 00012344444421 22334689999999999999999999999999999999 99991 24679999
Q ss_pred ECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEc
Q psy2979 173 ASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG 252 (400)
Q Consensus 173 d~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~G 252 (400)
||.+++|..+++|+.+|..+++++++++||++||.++....+++++|||.+++|+.+++||.+|..+++++++|+||++|
T Consensus 326 d~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviG 405 (557)
T PHA02713 326 NIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIG 405 (557)
T ss_pred ECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEe
Confidence 99999999999999999999999999999999999877677899999999999999999999999999999999999999
Q ss_pred CccccC---------------CCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEE
Q psy2979 253 GAILED---------------GDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECY 316 (400)
Q Consensus 253 G~~~~~---------------~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y 316 (400)
|..... ... .+++++|||.+++|+.+++|+.+|..+++++++|+||++||.++.....+.+++|
T Consensus 406 G~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Y 485 (557)
T PHA02713 406 GRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRY 485 (557)
T ss_pred CCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEe
Confidence 973100 011 5789999999999999999999999999999999999999986543313578999
Q ss_pred ECCC-CeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC
Q psy2979 317 HIAE-NTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS 379 (400)
Q Consensus 317 d~~~-~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 379 (400)
||.+ ++|+.+++||.+|..+++++++|+||++||. ++ ...+++|||.+++|+.+++-..
T Consensus 486 dp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~-~~---~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 486 NTNTYNGWELITTTESRLSALHTILHDNTIMMLHCY-ES---YMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred cCCCCCCeeEccccCcccccceeEEECCEEEEEeee-cc---eeehhhcCcccccccchhhhcC
Confidence 9999 8999999999999999999999999999998 44 2479999999999999876543
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1e-54 Score=413.75 Aligned_cols=344 Identities=17% Similarity=0.243 Sum_probs=263.8
Q ss_pred HHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCccccccc---------eeec--CCCCHH---HHHHHhhhccccc
Q psy2979 5 LTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVLE---------TIRL--PQLSPY---FLHDCVEQCAIIK 70 (400)
Q Consensus 5 l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m~---------~vrl--~~l~~~---~l~~~i~~~~l~~ 70 (400)
+.++-+||.++.||||++.+ |++|||||+||||+||||++|+ .|++ .+++++ .|++++||++|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~i 88 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVYI 88 (480)
T ss_pred hhhHHHHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEEE
Confidence 45678999999999999887 5699999999999999999993 2444 378875 7889999999999
Q ss_pred CchhHHHHHHHHHhcCCCccccccc--CCCCcCcCCCCCCC--------------------------------cEE----
Q psy2979 71 NNPQCAQLVEEAKLFHLLPDRRSAH--ITPRTKPRKSAGSI--------------------------------NVI---- 112 (400)
Q Consensus 71 ~~~~c~~~l~~a~~~~~~~~~~~~~--~~~~~~~r~~~~~~--------------------------------~~i---- 112 (400)
+.++.++++++|..+|+.+..+.|. ......+.+|.++. +++
T Consensus 89 t~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~ 168 (480)
T PHA02790 89 DSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSM 168 (480)
T ss_pred ecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCH
Confidence 9999999999998876543332210 00000011111000 000
Q ss_pred -EEEeccC-------------------CCcc-----------cc----------e----------EE-------------
Q psy2979 113 -IAVGGED-------------------DKVV-----------LR----------S----------VE------------- 128 (400)
Q Consensus 113 -~~~gg~~-------------------~~~~-----------~~----------~----------~~------------- 128 (400)
-++..-+ .... ++ . ..
T Consensus 169 ~~lLssd~L~v~~Ee~V~eav~~Wl~~~~~~~~~l~~~vr~~ir~~~l~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~ 248 (480)
T PHA02790 169 KLILESDELNVPDEDYVVDFVIKWYMKRRNRLGNLLLLIKNVIRSNYLSPRGINNVKWILDCTKIFHCDKQPRKSYKYPF 248 (480)
T ss_pred HHhcccccCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCChhhCCHHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 0000000 0000 00 0 00
Q ss_pred -EEEcCCCceEEccCCcccceeee-EEEECCeEEEEE------eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCE
Q psy2979 129 -GFCVKTKVWKTLSCLPFAISKHG-LVVSGRNTIYCL------DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGF 200 (400)
Q Consensus 129 -~yd~~~~~w~~~~~~~~~~~~~~-~~~~~~~~iyv~------~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~ 200 (400)
.+.+...+|... ..++ .+.+++. ||++ ...+.+++|||.+++|..+++|+.+|..++++.++++
T Consensus 249 ~~~~~~~~~~~~~-------~~~~~~~~~~~~-lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~ 320 (480)
T PHA02790 249 IEYPMNMDQIIDI-------FHMCTSTHVGEV-VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNK 320 (480)
T ss_pred cccCCcccceeec-------cCCcceEEECCE-EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCE
Confidence 011111122211 1233 3457888 9999 2346799999999999999999999999999999999
Q ss_pred EEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC
Q psy2979 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP 280 (400)
Q Consensus 201 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~ 280 (400)
||++||.++. +++++|||.+++|+.+++||.+|..+++++++|+||++||. ++. .+.+++|||.+++|+.+++
T Consensus 321 iYviGG~~~~---~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~---~~~-~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 321 LYVVGGLPNP---TSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGH---SET-DTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred EEEECCcCCC---CceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCc---CCC-CccEEEEeCCCCEEEeCCC
Confidence 9999997532 67999999999999999999999999999999999999998 443 3579999999999999999
Q ss_pred CCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCe
Q psy2979 281 MLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDS 360 (400)
Q Consensus 281 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~ 360 (400)
|+.+|..+++++++|+||++||. +++|||.+++|+.+++||.+|..+++++++|+||++||. +.....+.
T Consensus 394 m~~~r~~~~~~~~~~~IYv~GG~---------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~-~~~~~~~~ 463 (480)
T PHA02790 394 TYYPHYKSCALVFGRRLFLVGRN---------AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGF-YRGSYIDT 463 (480)
T ss_pred CCCccccceEEEECCEEEEECCc---------eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCc-CCCcccce
Confidence 99999999999999999999983 688999999999999999999999999999999999998 54445688
Q ss_pred EEEEECCCCcEEEe
Q psy2979 361 IECYDVDNDSWEIM 374 (400)
Q Consensus 361 v~~yd~~~~~W~~~ 374 (400)
+++|||++++|+..
T Consensus 464 ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 464 IEVYNNRTYSWNIW 477 (480)
T ss_pred EEEEECCCCeEEec
Confidence 99999999999875
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.6e-53 Score=413.27 Aligned_cols=265 Identities=24% Similarity=0.434 Sum_probs=227.1
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE-------eecCEEEEEECCCCCeEEc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL-------DIVDIVYVAASMHKILHSL 182 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~-------~~~~~~~~yd~~~~~w~~~ 182 (400)
..+++.||.+ ........|++..++|..+++.|. +..++++++++. ||++ ...+.++.||+.+++|..+
T Consensus 251 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 326 (534)
T PHA03098 251 SIIYIHITMS--IFTYNYITNYSPLSEINTIIDIHY-VYCFGSVVLNNV-IYFIGGMNKNNLSVNSVVSYDTKTKSWNKV 326 (534)
T ss_pred cceEeecccc--hhhceeeecchhhhhcccccCccc-cccceEEEECCE-EEEECCCcCCCCeeccEEEEeCCCCeeeEC
Confidence 3455555544 234556678888889998876653 334688889999 9999 2345799999999999999
Q ss_pred cCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCC-
Q psy2979 183 GSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG- 261 (400)
Q Consensus 183 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~- 261 (400)
++|+.+|..++++.++++||++||..+....+++++||+.+++|+.+++||.+|..+++++++++||++||.. ....
T Consensus 327 ~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~--~~~~~ 404 (534)
T PHA03098 327 PELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGIS--KNDEL 404 (534)
T ss_pred CCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcC--CCCcc
Confidence 9999999999999999999999999876678899999999999999999999999999999999999999972 2222
Q ss_pred cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCC--CCCeEEEEECCCCeEEEccCCcCccCcceEE
Q psy2979 262 IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTE--NTNRVECYHIAENTWEYKSPMKEKRYRPGIA 339 (400)
Q Consensus 262 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~--~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 339 (400)
++.+++||+.+++|+.++++|.+|.+++++.++++||++||.+.... ..+.+++||+.+++|+.++++|.+|..++++
T Consensus 405 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~ 484 (534)
T PHA03098 405 LKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC 484 (534)
T ss_pred cceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE
Confidence 68999999999999999999999999999999999999999764321 1467999999999999999999999999999
Q ss_pred EECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCC
Q psy2979 340 VIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSAR 381 (400)
Q Consensus 340 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r 381 (400)
+++++||++||. ......+.+++||+.+++|+.++.+|.-.
T Consensus 485 ~~~~~iyv~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~p~~~ 525 (534)
T PHA03098 485 IFNNKIYVVGGD-KYEYYINEIEVYDDKTNTWTLFCKFPKVI 525 (534)
T ss_pred EECCEEEEEcCC-cCCcccceeEEEeCCCCEEEecCCCcccc
Confidence 999999999998 55555789999999999999998877543
No 5
>KOG4441|consensus
Probab=100.00 E-value=2.3e-50 Score=387.01 Aligned_cols=391 Identities=32% Similarity=0.533 Sum_probs=315.4
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc----------ceeecCCCCHH---HHHHHhhhccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPY---FLHDCVEQCAI 68 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m----------~~vrl~~l~~~---~l~~~i~~~~l 68 (400)
+.+++.|+.+|+++.||||+|.+++++|+|||+||||+||||++| +.|+|.+++++ .|++++|++.+
T Consensus 21 ~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i 100 (571)
T KOG4441|consen 21 KFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKL 100 (571)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceE
Confidence 568999999999999999999999999999999999999999999 57899999997 68899999999
Q ss_pred ccCchhHHHHHHHHHhcCCCcccccc--cCCCCcCcCCCCCCCcEEEEEec-----------------------------
Q psy2979 69 IKNNPQCAQLVEEAKLFHLLPDRRSA--HITPRTKPRKSAGSINVIIAVGG----------------------------- 117 (400)
Q Consensus 69 ~~~~~~c~~~l~~a~~~~~~~~~~~~--~~~~~~~~r~~~~~~~~i~~~gg----------------------------- 117 (400)
.++..+.++++++|..+|+....+.+ .......+.||.++..+....+-
T Consensus 101 ~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~ 180 (571)
T KOG4441|consen 101 EISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSL 180 (571)
T ss_pred EechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCH
Confidence 99999999999999988765544321 00111122233221111000000
Q ss_pred --------cCCCcccceEE---------EEEcCC---------------------------------------------C
Q psy2979 118 --------EDDKVVLRSVE---------GFCVKT---------------------------------------------K 135 (400)
Q Consensus 118 --------~~~~~~~~~~~---------~yd~~~---------------------------------------------~ 135 (400)
.+.....++.. .+|+.. .
T Consensus 181 ~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 181 EELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred HHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 00000000000 000000 0
Q ss_pred ceEEccC----CcccceeeeEEEECCeEEEEE-------eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEE
Q psy2979 136 VWKTLSC----LPFAISKHGLVVSGRNTIYCL-------DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAV 204 (400)
Q Consensus 136 ~w~~~~~----~~~~~~~~~~~~~~~~~iyv~-------~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~ 204 (400)
+|..++. ++.++..... ...+. ||++ ...+.+++|||.++.|..+++|+.+|..+++++++|+||++
T Consensus 261 ~~~~~~~~~~~~~~~~t~~r~-~~~~~-l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~ 338 (571)
T KOG4441|consen 261 KYHLLPQRRPVMQSPRTRPRR-SVSGK-LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVV 338 (571)
T ss_pred HHhhCcccCccccCCCcccCc-CCCCe-EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEE
Confidence 1221211 2333332221 23344 6766 33578999999999999999999999999999999999999
Q ss_pred cccC-CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCC
Q psy2979 205 GGWD-GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPML 282 (400)
Q Consensus 205 GG~~-~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~ 282 (400)
||.+ +...++++++|||.+++|+.+++|+.+|..+++++++|.||++||. ++.. ++++++|||.+++|+.+++|+
T Consensus 339 GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~---dg~~~l~svE~YDp~~~~W~~va~m~ 415 (571)
T KOG4441|consen 339 GGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGF---DGEKSLNSVECYDPVTNKWTPVAPML 415 (571)
T ss_pred ccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEecc---ccccccccEEEecCCCCcccccCCCC
Confidence 9999 7888999999999999999999999999999999999999999999 8877 999999999999999999999
Q ss_pred CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEE
Q psy2979 283 IPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIE 362 (400)
Q Consensus 283 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~ 362 (400)
.+|.++++++++++||++||.++.....+++++|||.+++|+.+++|+.+|.++++++++++||++||. ++......|+
T Consensus 416 ~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~-~~~~~~~~VE 494 (571)
T KOG4441|consen 416 TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGF-DGTSALSSVE 494 (571)
T ss_pred cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCc-cCCCccceEE
Confidence 999999999999999999998887723899999999999999999999999999999999999999999 5566678899
Q ss_pred EEECCCCcEEEecCCCCCCCceeeEEEccccccccc
Q psy2979 363 CYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 363 ~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
+|||.+++|+.++.|+.+|..+++++++++.|+..|
T Consensus 495 ~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 495 RYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 999999999999999999999999999998887644
No 6
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3.7e-44 Score=345.93 Aligned_cols=229 Identities=20% Similarity=0.320 Sum_probs=206.2
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccC-CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeC
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWD-GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE 245 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~ 245 (400)
..+++|||.+++|..+++||.+|..+++++++++||++||.+ +....+++++|||.+++|..+++||.+|..+++++++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 468999999999999999999999999999999999999986 3445788999999999999999999999999999999
Q ss_pred CEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCC-----------------
Q psy2979 246 GMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHAST----------------- 307 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~----------------- 307 (400)
|+||++||. ++.. .+++++|||.+++|+.+++||.+|..+++++++|+||++||.++..
T Consensus 352 g~IYviGG~---~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 352 DTIYAIGGQ---NGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CEEEEECCc---CCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccc
Confidence 999999998 6655 7889999999999999999999999999999999999999976421
Q ss_pred CCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCC-CcEEEecCCCCCCCceee
Q psy2979 308 ENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDN-DSWEIMSHLPSARSWLGC 386 (400)
Q Consensus 308 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~r~~~~~ 386 (400)
...+++++|||.+++|+.+++|+.+|..+++++++|+||++||.++.....+.+++|||++ ++|+.+++||.+|..+++
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 1157899999999999999999999999999999999999999832222335689999999 899999999999999999
Q ss_pred EEEccccccccc
Q psy2979 387 VPLQIHKSQFVD 398 (400)
Q Consensus 387 ~~~~~~~~~~~~ 398 (400)
++++++.|++.|
T Consensus 509 ~~~~~~iyv~Gg 520 (557)
T PHA02713 509 ILHDNTIMMLHC 520 (557)
T ss_pred EEECCEEEEEee
Confidence 999998888543
No 7
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=8.5e-41 Score=317.59 Aligned_cols=284 Identities=21% Similarity=0.367 Sum_probs=231.8
Q ss_pred cEEEEEeccCCCcccceEEEE--EcCC----CceEEccC---CcccceeeeEEEECCeEEEEE--e------ecCEEEEE
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGF--CVKT----KVWKTLSC---LPFAISKHGLVVSGRNTIYCL--D------IVDIVYVA 172 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~y--d~~~----~~w~~~~~---~~~~~~~~~~~~~~~~~iyv~--~------~~~~~~~y 172 (400)
..|+.|+|.. ...+.++-.| ++.+ ++|.++++ +|.+|..|+++++++. ||++ . ..+.+++|
T Consensus 121 ~~ivgf~G~~-~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~-iyv~GG~~~~~~~~~~~v~~y 198 (470)
T PLN02193 121 GKIVGFHGRS-TDVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNK-IYSFGGEFTPNQPIDKHLYVF 198 (470)
T ss_pred CeEEEEeccC-CCcEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCE-EEEECCcCCCCCCeeCcEEEE
Confidence 5677777765 2346666666 5544 78998875 5889999999999999 9999 1 23569999
Q ss_pred ECCCCCeEEccCC---CC-cceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCC---CCcccccEEEEeC
Q psy2979 173 ASMHKILHSLGSL---KF-DFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM---KLAVTSPAVVAHE 245 (400)
Q Consensus 173 d~~~~~w~~~~~~---~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l---~~~~~~~~~~~~~ 245 (400)
|+.+++|..++++ |. +|..++++.++++||++||.+.....+++++||+.+++|+.++++ |.+|..|++++++
T Consensus 199 D~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~ 278 (470)
T PLN02193 199 DLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADE 278 (470)
T ss_pred ECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEEC
Confidence 9999999987653 33 356888899999999999998777788999999999999999888 8899999999999
Q ss_pred CEEEEEcCccccCCCC-cceEEEEeCCCCceeeccC---CCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 246 GMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAP---MLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
++|||+||. ++.. .+.+++||+.+++|+.+++ ++.+|..|++++++++||++||.++. . .+++++||+.++
T Consensus 279 ~~iYv~GG~---~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~-~~dv~~yD~~t~ 353 (470)
T PLN02193 279 ENVYVFGGV---SATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-E-VDDVHYYDPVQD 353 (470)
T ss_pred CEEEEECCC---CCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-c-cCceEEEECCCC
Confidence 999999998 6554 7889999999999999874 67889999999999999999997643 2 688999999999
Q ss_pred eEEEccCC---cCccCcceEEEECCEEEEEcCccC--------CCCCCCeEEEEECCCCcEEEecCC------CCCCCce
Q psy2979 322 TWEYKSPM---KEKRYRPGIAVIDGKIYVLGGEEG--------WDGYHDSIECYDVDNDSWEIMSHL------PSARSWL 384 (400)
Q Consensus 322 ~W~~~~~~---~~~~~~~~~~~~~~~lyv~GG~~~--------~~~~~~~v~~yd~~~~~W~~~~~~------~~~r~~~ 384 (400)
+|+.++++ |.+|..+++++++++|||+||... .....+++++||+.+++|+.++.+ |.+|..+
T Consensus 354 ~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~ 433 (470)
T PLN02193 354 KWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWT 433 (470)
T ss_pred EEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccc
Confidence 99999754 789999999999999999999721 112457899999999999998753 5677776
Q ss_pred ee--EEEcc-cccccccCC
Q psy2979 385 GC--VPLQI-HKSQFVDKS 400 (400)
Q Consensus 385 ~~--~~~~~-~~~~~~~~~ 400 (400)
++ +.+.+ +.++++||.
T Consensus 434 ~~~~~~~~~~~~~~~fGG~ 452 (470)
T PLN02193 434 ASTTGTIDGKKGLVMHGGK 452 (470)
T ss_pred cceeeEEcCCceEEEEcCC
Confidence 53 23444 346666663
No 8
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=4.1e-41 Score=308.97 Aligned_cols=266 Identities=20% Similarity=0.281 Sum_probs=214.2
Q ss_pred CCCceEEccC----CcccceeeeEEEECCeEEEEE--e------ecCEEEEEECCCCCeEEccCCC-Ccc---eeeeEEE
Q psy2979 133 KTKVWKTLSC----LPFAISKHGLVVSGRNTIYCL--D------IVDIVYVAASMHKILHSLGSLK-FDF---DVSGIAM 196 (400)
Q Consensus 133 ~~~~w~~~~~----~~~~~~~~~~~~~~~~~iyv~--~------~~~~~~~yd~~~~~w~~~~~~~-~~r---~~~~~~~ 196 (400)
....|.++.. +|.+|..|+++++++. ||++ . ..+.++.||+.+++|..++++. .|| ..++++.
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDK-LYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCE-EEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 5567998865 7899999999999999 9999 1 2357999999999999988764 344 3688899
Q ss_pred ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCC-----CCcccccEEEEeCCEEEEEcCccccC---CCC-cceEEE
Q psy2979 197 LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM-----KLAVTSPAVVAHEGMLYVTGGAILED---GDG-IEQVQR 267 (400)
Q Consensus 197 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l-----~~~~~~~~~~~~~~~iyv~GG~~~~~---~~~-~~~v~~ 267 (400)
++++||++||.......+++++||+.+++|+.+++| |.+|..|++++.+++|||+||..... ... .+++++
T Consensus 84 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 84 VGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred ECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEE
Confidence 999999999988766778999999999999999887 78999999999999999999983100 011 468999
Q ss_pred EeCCCCceeeccCCC---CCceeeeEEEECCeEEEEcCcCCC-------CCCCCeEEEEECCCCeEEEccC---CcCccC
Q psy2979 268 YNPKVNQWQDLAPML---IPRSGAAICALDSCIYVLGGWHAS-------TENTNRVECYHIAENTWEYKSP---MKEKRY 334 (400)
Q Consensus 268 yd~~~~~W~~~~~~~---~~r~~~~~~~~~~~iyv~GG~~~~-------~~~~~~v~~yd~~~~~W~~~~~---~~~~~~ 334 (400)
||+.+++|+.++++. .+|..+++++++++||++||.... ....+++++||+.+++|+.++. +|.+|.
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS 243 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence 999999999998764 789999999999999999986421 1115789999999999999874 688999
Q ss_pred cceEEEECCEEEEEcCccC--------CCCCCCeEEEEECCCCcEEEec-----CCCCCCCceeeEEE-cccccccccC
Q psy2979 335 RPGIAVIDGKIYVLGGEEG--------WDGYHDSIECYDVDNDSWEIMS-----HLPSARSWLGCVPL-QIHKSQFVDK 399 (400)
Q Consensus 335 ~~~~~~~~~~lyv~GG~~~--------~~~~~~~v~~yd~~~~~W~~~~-----~~~~~r~~~~~~~~-~~~~~~~~~~ 399 (400)
.+++++++++|||+||... .....+++++||+++++|+.+. ++|.+|..++++.+ ++..+++.||
T Consensus 244 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 244 VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322 (341)
T ss_pred eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence 9999999999999999721 1224579999999999999985 45555554455444 4434555565
No 9
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=3.9e-41 Score=320.75 Aligned_cols=299 Identities=15% Similarity=0.238 Sum_probs=239.7
Q ss_pred hhHHHHHHHHHhc--Cceece----EEEECCeEEehhhHHHhhcCcccc--------ccc----eeecCCCCHHHHHHHh
Q psy2979 2 KMVLTGFNEARKN--NEFCDV----TLCVDGSKFPAHRVVLAASSPYFK--------VLE----TIRLPQLSPYFLHDCV 63 (400)
Q Consensus 2 ~~~l~~l~~~r~~--~~~~Dv----~l~~~~~~~~~hr~vLaa~s~yf~--------~m~----~vrl~~l~~~~l~~~i 63 (400)
++|+++|.++.++ ++|..+ .|..|+..+..+..|+.|+..|.+ +|+ .||++.|++.++.+
T Consensus 146 ~fi~~nF~~v~~~~~~ef~~L~~~~lLssd~L~v~~Ee~V~eav~~Wl~~~~~~~~~l~~~vr~~ir~~~l~~~~l~~-- 223 (480)
T PHA02790 146 DFIAKHFLELEDDIIDNFDYLSMKLILESDELNVPDEDYVVDFVIKWYMKRRNRLGNLLLLIKNVIRSNYLSPRGINN-- 223 (480)
T ss_pred HHHHHhHHHHhcccchhhhhCCHHHhcccccCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCChhhCCHHHHHH--
Confidence 5789999999986 678665 477788899999999999998865 233 36777777776643
Q ss_pred hhcccccCchhHHHHHHHHHhcCCCccccc---------ccCCCC-cC-cCCC--CCCCcEEEEEeccCCCcccceEEEE
Q psy2979 64 EQCAIIKNNPQCAQLVEEAKLFHLLPDRRS---------AHITPR-TK-PRKS--AGSINVIIAVGGEDDKVVLRSVEGF 130 (400)
Q Consensus 64 ~~~~l~~~~~~c~~~l~~a~~~~~~~~~~~---------~~~~~~-~~-~r~~--~~~~~~i~~~gg~~~~~~~~~~~~y 130 (400)
+..++.++..++..+..+. .+.... .. ...+ ....+.++++||.+.....++++.|
T Consensus 224 -----------~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~~~~~~~~~v~~Y 292 (480)
T PHA02790 224 -----------VKWILDCTKIFHCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWMNNEIHNNAIAV 292 (480)
T ss_pred -----------HHHHHHHHHHhhccccccccccccccccCCcccceeeccCCcceEEECCEEEEEcCCCCCCcCCeEEEE
Confidence 2233333333321110000 000000 00 0111 1135789999998766677889999
Q ss_pred EcCCCceEEccCCcccceeeeEEEECCeEEEEE---eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEccc
Q psy2979 131 CVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL---DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGW 207 (400)
Q Consensus 131 d~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~---~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 207 (400)
||.+++|..+++||.+|..++++++++. ||++ ...+.+++|||.+++|..+++||.+|..+++++++++||++||.
T Consensus 293 dp~~~~W~~~~~m~~~r~~~~~v~~~~~-iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~ 371 (480)
T PHA02790 293 NYISNNWIPIPPMNSPRLYASGVPANNK-LYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGH 371 (480)
T ss_pred ECCCCEEEECCCCCchhhcceEEEECCE-EEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCc
Confidence 9999999999999999999999999999 9999 23467999999999999999999999999999999999999998
Q ss_pred CCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCcee
Q psy2979 208 DGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSG 287 (400)
Q Consensus 208 ~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~ 287 (400)
++. .+++++|||.+++|+.+++|+.+|..+++++++|+||++||. +++|||.+++|+.+++|+.+|..
T Consensus 372 ~~~--~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~----------~e~ydp~~~~W~~~~~m~~~r~~ 439 (480)
T PHA02790 372 SET--DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN----------AEFYCESSNTWTLIDDPIYPRDN 439 (480)
T ss_pred CCC--CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc----------eEEecCCCCcEeEcCCCCCCccc
Confidence 643 367999999999999999999999999999999999999996 58899999999999999999999
Q ss_pred eeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc
Q psy2979 288 AAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKS 327 (400)
Q Consensus 288 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 327 (400)
+++++++|+||++||.++... .+++++|||.+++|+...
T Consensus 440 ~~~~v~~~~IYviGG~~~~~~-~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 440 PELIIVDNKLLLIGGFYRGSY-IDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred cEEEEECCEEEEECCcCCCcc-cceEEEEECCCCeEEecC
Confidence 999999999999999876554 689999999999998653
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=7.9e-41 Score=308.29 Aligned_cols=255 Identities=22% Similarity=0.319 Sum_probs=208.7
Q ss_pred ccCCcccceeeeEEEECCeEEEEE--eecCEEEEEEC--CCCCeEEccCCC-CcceeeeEEEECCEEEEEcccCCC----
Q psy2979 140 LSCLPFAISKHGLVVSGRNTIYCL--DIVDIVYVAAS--MHKILHSLGSLK-FDFDVSGIAMLDGFVYAVGGWDGS---- 210 (400)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~iyv~--~~~~~~~~yd~--~~~~w~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~---- 210 (400)
+++||.++..++++++++. ||++ ...+.++.||+ .+++|..+++|| .+|..+++++++++|||+||....
T Consensus 1 ~~~lp~~~~~~~~~~~~~~-vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~ 79 (346)
T TIGR03547 1 LPDLPVGFKNGTGAIIGDK-VYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEG 79 (346)
T ss_pred CCCCCccccCceEEEECCE-EEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCC
Confidence 4678989998888899999 9999 33468899996 678999999998 589999999999999999998632
Q ss_pred --CCCCeEEEEeCCCCceEEcc-CCCCcccccEEE-EeCCEEEEEcCccccCCC--------------------------
Q psy2979 211 --CRLDSVERYDPTKNEWSYIE-PMKLAVTSPAVV-AHEGMLYVTGGAILEDGD-------------------------- 260 (400)
Q Consensus 211 --~~~~~v~~yd~~~~~W~~~~-~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~-------------------------- 260 (400)
..++++++||+.+++|+.++ ++|..+..++++ +++++||++||. ++.
T Consensus 80 ~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T TIGR03547 80 SPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGV---NKNIFDGYFADLSAADKDSEPKDKLIAAY 156 (346)
T ss_pred cceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCc---ChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence 14678999999999999997 567777777766 789999999997 321
Q ss_pred --------C-cceEEEEeCCCCceeeccCCCC-CceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEE--CCCCeEEEccC
Q psy2979 261 --------G-IEQVQRYNPKVNQWQDLAPMLI-PRSGAAICALDSCIYVLGGWHASTENTNRVECYH--IAENTWEYKSP 328 (400)
Q Consensus 261 --------~-~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd--~~~~~W~~~~~ 328 (400)
. .+++++|||.+++|+.+++||. +|..+++++++++||++||..........++.|| +.+++|+.+++
T Consensus 157 ~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 157 FSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred hCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence 0 2689999999999999999996 6889999999999999999764432134566555 57789999999
Q ss_pred CcCccC-------cceEEEECCEEEEEcCccCCC----------------CCCCeEEEEECCCCcEEEecCCCCCCCcee
Q psy2979 329 MKEKRY-------RPGIAVIDGKIYVLGGEEGWD----------------GYHDSIECYDVDNDSWEIMSHLPSARSWLG 385 (400)
Q Consensus 329 ~~~~~~-------~~~~~~~~~~lyv~GG~~~~~----------------~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~ 385 (400)
||.+|. .+.+++++++|||+||.+... .....+++||+++++|+.+++||.+|..++
T Consensus 237 m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~ 316 (346)
T TIGR03547 237 LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGV 316 (346)
T ss_pred CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeE
Confidence 987652 444678899999999972110 012468999999999999999999999999
Q ss_pred eEEEccccccccc
Q psy2979 386 CVPLQIHKSQFVD 398 (400)
Q Consensus 386 ~~~~~~~~~~~~~ 398 (400)
+++++++.|++.|
T Consensus 317 ~~~~~~~iyv~GG 329 (346)
T TIGR03547 317 SVSWNNGVLLIGG 329 (346)
T ss_pred EEEcCCEEEEEec
Confidence 8889998887765
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=6.5e-39 Score=292.36 Aligned_cols=246 Identities=19% Similarity=0.277 Sum_probs=203.2
Q ss_pred cceeeeEEEECCeEEEEE---e-------------ecCEEEEEE-CCC-CCeEEccCCCCcceeeeEEEECCEEEEEccc
Q psy2979 146 AISKHGLVVSGRNTIYCL---D-------------IVDIVYVAA-SMH-KILHSLGSLKFDFDVSGIAMLDGFVYAVGGW 207 (400)
Q Consensus 146 ~~~~~~~~~~~~~~iyv~---~-------------~~~~~~~yd-~~~-~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 207 (400)
.+..+.++++++. ||++ . ..++++.|+ +.. .+|..+++||.+|..++++.++++||++||.
T Consensus 3 ~~~g~~~~~~~~~-l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~ 81 (323)
T TIGR03548 3 GVAGCYAGIIGDY-ILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGS 81 (323)
T ss_pred ceeeEeeeEECCE-EEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCC
Confidence 4567788899999 9999 1 113567775 332 3799999999999988889999999999999
Q ss_pred CCCCCCCeEEEEeCCCCce----EEccCCCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCC
Q psy2979 208 DGSCRLDSVERYDPTKNEW----SYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPML 282 (400)
Q Consensus 208 ~~~~~~~~v~~yd~~~~~W----~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~ 282 (400)
++....+++++||+.+++| +.+++||.+|..|++++++++||++||. .... .+++++||+.+++|+.+++||
T Consensus 82 ~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~---~~~~~~~~v~~yd~~~~~W~~~~~~p 158 (323)
T TIGR03548 82 NSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGN---RNGKPSNKSYLFNLETQEWFELPDFP 158 (323)
T ss_pred CCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCc---CCCccCceEEEEcCCCCCeeECCCCC
Confidence 8777788999999999998 7889999999999999999999999997 4333 789999999999999999988
Q ss_pred -CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc---Ccc--Ccce-EEEECCEEEEEcCccCCC
Q psy2979 283 -IPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK---EKR--YRPG-IAVIDGKIYVLGGEEGWD 355 (400)
Q Consensus 283 -~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~---~~~--~~~~-~~~~~~~lyv~GG~~~~~ 355 (400)
.+|..+++++++++||++||.+... ..++++|||.+++|+.+++++ .++ ..+. +++.+++|||+||. +..
T Consensus 159 ~~~r~~~~~~~~~~~iYv~GG~~~~~--~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~-~~~ 235 (323)
T TIGR03548 159 GEPRVQPVCVKLQNELYVFGGGSNIA--YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGF-NKD 235 (323)
T ss_pred CCCCCcceEEEECCEEEEEcCCCCcc--ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCc-CHH
Confidence 4888899999999999999986533 356899999999999998764 233 2333 34447999999998 321
Q ss_pred --------------------------------CCCCeEEEEECCCCcEEEecCCC-CCCCceeeEEEccccccccc
Q psy2979 356 --------------------------------GYHDSIECYDVDNDSWEIMSHLP-SARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 356 --------------------------------~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~~~~~~~ 398 (400)
...+++++|||.+++|+.++++| .+|..+++++++++.|++.|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 236 VYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSING 311 (323)
T ss_pred HHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEec
Confidence 11368999999999999999887 58999999999998776654
No 12
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=7.7e-39 Score=296.96 Aligned_cols=262 Identities=20% Similarity=0.285 Sum_probs=209.7
Q ss_pred ceEEccCCcccceeeeEEEECCeEEEEE--eecCEEEEEECC--CCCeEEccCCC-CcceeeeEEEECCEEEEEcccCC-
Q psy2979 136 VWKTLSCLPFAISKHGLVVSGRNTIYCL--DIVDIVYVAASM--HKILHSLGSLK-FDFDVSGIAMLDGFVYAVGGWDG- 209 (400)
Q Consensus 136 ~w~~~~~~~~~~~~~~~~~~~~~~iyv~--~~~~~~~~yd~~--~~~w~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~- 209 (400)
.+..+++||.++..++++++++. ||++ ...+.++.||+. +++|..++++| .+|..++++.++++|||+||...
T Consensus 18 ~~~~l~~lP~~~~~~~~~~~~~~-iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~ 96 (376)
T PRK14131 18 NAEQLPDLPVPFKNGTGAIDNNT-VYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKT 96 (376)
T ss_pred ecccCCCCCcCccCCeEEEECCE-EEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCC
Confidence 46678999999888888899999 9998 334668999986 47899999997 58999999999999999999864
Q ss_pred C-----CCCCeEEEEeCCCCceEEccC-CCCcccccEEEE-eCCEEEEEcCcccc--CC---------------------
Q psy2979 210 S-----CRLDSVERYDPTKNEWSYIEP-MKLAVTSPAVVA-HEGMLYVTGGAILE--DG--------------------- 259 (400)
Q Consensus 210 ~-----~~~~~v~~yd~~~~~W~~~~~-l~~~~~~~~~~~-~~~~iyv~GG~~~~--~~--------------------- 259 (400)
. ..++++++||+.+++|+.+++ +|.++..|++++ .+++||++||.... ++
T Consensus 97 ~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~ 176 (376)
T PRK14131 97 NSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDA 176 (376)
T ss_pred CCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHH
Confidence 1 235789999999999999986 467777777776 89999999997210 00
Q ss_pred --------CC-cceEEEEeCCCCceeeccCCCC-CceeeeEEEECCeEEEEcCcCCCCCCCCeEE--EEECCCCeEEEcc
Q psy2979 260 --------DG-IEQVQRYNPKVNQWQDLAPMLI-PRSGAAICALDSCIYVLGGWHASTENTNRVE--CYHIAENTWEYKS 327 (400)
Q Consensus 260 --------~~-~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~--~yd~~~~~W~~~~ 327 (400)
.. .+.+++|||.+++|+.++++|. +|..++++.++++||++||..........++ .||+++++|+.++
T Consensus 177 ~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~ 256 (376)
T PRK14131 177 YFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP 256 (376)
T ss_pred HhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC
Confidence 00 3689999999999999999996 7888899999999999999754332133444 5688999999999
Q ss_pred CCcCccCc--------ceEEEECCEEEEEcCccCCCC----------------CCCeEEEEECCCCcEEEecCCCCCCCc
Q psy2979 328 PMKEKRYR--------PGIAVIDGKIYVLGGEEGWDG----------------YHDSIECYDVDNDSWEIMSHLPSARSW 383 (400)
Q Consensus 328 ~~~~~~~~--------~~~~~~~~~lyv~GG~~~~~~----------------~~~~v~~yd~~~~~W~~~~~~~~~r~~ 383 (400)
+||.+|.. +.+++++++|||+||.+.... ....+++||+++++|+.++.||.+|..
T Consensus 257 ~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~ 336 (376)
T PRK14131 257 DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAY 336 (376)
T ss_pred CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccc
Confidence 99877642 225678999999999731110 013578999999999999999999999
Q ss_pred eeeEEEccccccccc
Q psy2979 384 LGCVPLQIHKSQFVD 398 (400)
Q Consensus 384 ~~~~~~~~~~~~~~~ 398 (400)
+++++++++.|++.|
T Consensus 337 ~~av~~~~~iyv~GG 351 (376)
T PRK14131 337 GVSVSWNNGVLLIGG 351 (376)
T ss_pred eEEEEeCCEEEEEcC
Confidence 999999998887765
No 13
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.3e-37 Score=285.75 Aligned_cols=259 Identities=17% Similarity=0.235 Sum_probs=206.4
Q ss_pred CcEEEEEeccCC--CcccceEEEEEcCCCceEEccCCc-ccc---eeeeEEEECCeEEEEE------eecCEEEEEECCC
Q psy2979 109 INVIIAVGGEDD--KVVLRSVEGFCVKTKVWKTLSCLP-FAI---SKHGLVVSGRNTIYCL------DIVDIVYVAASMH 176 (400)
Q Consensus 109 ~~~i~~~gg~~~--~~~~~~~~~yd~~~~~w~~~~~~~-~~~---~~~~~~~~~~~~iyv~------~~~~~~~~yd~~~ 176 (400)
.+.|+++||... ....++++.||+.+++|..+++++ .++ ..|+++++++. ||++ ...+++++||+.+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTK-LYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCE-EEEECCCCCCCccCcEEEEECCC
Confidence 578999999853 223478999999999999987653 333 36888899999 9999 3346899999999
Q ss_pred CCeEEccCC-----CCcceeeeEEEECCEEEEEcccCCCC------CCCeEEEEeCCCCceEEccCCC---CcccccEEE
Q psy2979 177 KILHSLGSL-----KFDFDVSGIAMLDGFVYAVGGWDGSC------RLDSVERYDPTKNEWSYIEPMK---LAVTSPAVV 242 (400)
Q Consensus 177 ~~w~~~~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~------~~~~v~~yd~~~~~W~~~~~l~---~~~~~~~~~ 242 (400)
++|+.+++| |.+|..|++++.+++|||+||.+... .++++++||+.+++|+.++++. .+|..|+++
T Consensus 111 ~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~ 190 (341)
T PLN02153 111 NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFA 190 (341)
T ss_pred CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEE
Confidence 999999887 78899999999999999999986321 3568999999999999998764 789999999
Q ss_pred EeCCEEEEEcCccc---cCCC--C-cceEEEEeCCCCceeeccC---CCCCceeeeEEEECCeEEEEcCcCC--------
Q psy2979 243 AHEGMLYVTGGAIL---EDGD--G-IEQVQRYNPKVNQWQDLAP---MLIPRSGAAICALDSCIYVLGGWHA-------- 305 (400)
Q Consensus 243 ~~~~~iyv~GG~~~---~~~~--~-~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~-------- 305 (400)
+++++||++||... ..+. . .+.+++||+.+++|+++++ +|.+|..+++++++++||++||...
T Consensus 191 ~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 270 (341)
T PLN02153 191 VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLG 270 (341)
T ss_pred EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccc
Confidence 99999999998621 0111 1 5789999999999999974 6889999999999999999999632
Q ss_pred CCCCCCeEEEEECCCCeEEEcc-----CCcCccCcceEEE-E-CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 306 STENTNRVECYHIAENTWEYKS-----PMKEKRYRPGIAV-I-DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 306 ~~~~~~~v~~yd~~~~~W~~~~-----~~~~~~~~~~~~~-~-~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
.....+++++||+.+++|+.++ ++|.++..++++. . +++|||+||........+++++|+..+
T Consensus 271 ~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~~ 340 (341)
T PLN02153 271 PGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVNS 340 (341)
T ss_pred cccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEEeccc
Confidence 1111568999999999999986 4555555444443 3 358999999944456779999998643
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=9.6e-38 Score=284.67 Aligned_cols=240 Identities=21% Similarity=0.337 Sum_probs=197.5
Q ss_pred CCcEEEEEeccCCCc----------ccceEEEEE-cCCC-ceEEccCCcccceeeeEEEECCeEEEEE------eecCEE
Q psy2979 108 SINVIIAVGGEDDKV----------VLRSVEGFC-VKTK-VWKTLSCLPFAISKHGLVVSGRNTIYCL------DIVDIV 169 (400)
Q Consensus 108 ~~~~i~~~gg~~~~~----------~~~~~~~yd-~~~~-~w~~~~~~~~~~~~~~~~~~~~~~iyv~------~~~~~~ 169 (400)
+.+.|+++||.+... ..++++.|+ +..+ +|..+++||.+|..++++++++. ||++ ...+.+
T Consensus 12 ~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~-lyviGG~~~~~~~~~v 90 (323)
T TIGR03548 12 IGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENG-IYYIGGSNSSERFSSV 90 (323)
T ss_pred ECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCE-EEEEcCCCCCCCceeE
Confidence 358999999986432 224566665 3322 69999999999988888889999 9999 345789
Q ss_pred EEEECCCCCe----EEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCC-CcccccEEEEe
Q psy2979 170 YVAASMHKIL----HSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK-LAVTSPAVVAH 244 (400)
Q Consensus 170 ~~yd~~~~~w----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~-~~~~~~~~~~~ 244 (400)
++||+.+++| ..+++||.+|..+++++++++||++||.......+++++||+.+++|+.+++|| .+|..++++++
T Consensus 91 ~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~ 170 (323)
T TIGR03548 91 YRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKL 170 (323)
T ss_pred EEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEE
Confidence 9999999988 788999999999999999999999999865556789999999999999999998 47888888999
Q ss_pred CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC---CCce--eeeE-EEECCeEEEEcCcCCCCC----------
Q psy2979 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML---IPRS--GAAI-CALDSCIYVLGGWHASTE---------- 308 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~---~~r~--~~~~-~~~~~~iyv~GG~~~~~~---------- 308 (400)
+++|||+||. ++....++++||+.+++|+.+++|+ .|+. .++. +..+++||++||.+....
T Consensus 171 ~~~iYv~GG~---~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 247 (323)
T TIGR03548 171 QNELYVFGGG---SNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATM 247 (323)
T ss_pred CCEEEEEcCC---CCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhc
Confidence 9999999998 5433456899999999999998764 3333 3333 444799999999864210
Q ss_pred ---------------------CCCeEEEEECCCCeEEEccCCc-CccCcceEEEECCEEEEEcCc
Q psy2979 309 ---------------------NTNRVECYHIAENTWEYKSPMK-EKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 309 ---------------------~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~lyv~GG~ 351 (400)
..+++++||+.+++|+.++++| .+|..+++++++++||++||.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 248 KDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGE 312 (323)
T ss_pred cchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecc
Confidence 0367999999999999999887 689999999999999999997
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.2e-37 Score=287.12 Aligned_cols=249 Identities=17% Similarity=0.264 Sum_probs=201.7
Q ss_pred CcEEEEEeccCCCcccceEEEEEc--CCCceEEccCCc-ccceeeeEEEECCeEEEEE---e---------ecCEEEEEE
Q psy2979 109 INVIIAVGGEDDKVVLRSVEGFCV--KTKVWKTLSCLP-FAISKHGLVVSGRNTIYCL---D---------IVDIVYVAA 173 (400)
Q Consensus 109 ~~~i~~~gg~~~~~~~~~~~~yd~--~~~~w~~~~~~~-~~~~~~~~~~~~~~~iyv~---~---------~~~~~~~yd 173 (400)
.+.++++||... +..+.||+ .+++|.++++|| .+|..++++++++. ||++ . ..+.+++||
T Consensus 17 ~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~-iYv~GG~~~~~~~~~~~~~~~v~~Yd 91 (346)
T TIGR03547 17 GDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGK-LYVFGGIGKANSEGSPQVFDDVYRYD 91 (346)
T ss_pred CCEEEEEccccC----CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCE-EEEEeCCCCCCCCCcceecccEEEEE
Confidence 578999999742 56788985 667899999999 68999999999999 9999 1 246799999
Q ss_pred CCCCCeEEcc-CCCCcceeeeEE-EECCEEEEEcccCCCC----------------------------------CCCeEE
Q psy2979 174 SMHKILHSLG-SLKFDFDVSGIA-MLDGFVYAVGGWDGSC----------------------------------RLDSVE 217 (400)
Q Consensus 174 ~~~~~w~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~----------------------------------~~~~v~ 217 (400)
|.+++|+.++ ++|.+|..++++ .++++||++||.++.. ..++++
T Consensus 92 ~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (346)
T TIGR03547 92 PKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVL 171 (346)
T ss_pred CCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEE
Confidence 9999999997 456677777666 6899999999986321 137899
Q ss_pred EEeCCCCceEEccCCCC-cccccEEEEeCCEEEEEcCccccCCCC--cceEEEE--eCCCCceeeccCCCCCc-------
Q psy2979 218 RYDPTKNEWSYIEPMKL-AVTSPAVVAHEGMLYVTGGAILEDGDG--IEQVQRY--NPKVNQWQDLAPMLIPR------- 285 (400)
Q Consensus 218 ~yd~~~~~W~~~~~l~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~v~~y--d~~~~~W~~~~~~~~~r------- 285 (400)
+|||.+++|+.+++||. +|..+++++++++|||+||. .... ..+++.| |+.+++|+.+++||.+|
T Consensus 172 ~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~ 248 (346)
T TIGR03547 172 SYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE---IKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGL 248 (346)
T ss_pred EEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee---eCCCccchheEEEEecCCCceeeecCCCCCCCCCccccc
Confidence 99999999999999996 68889999999999999998 3322 3456555 45778999999998765
Q ss_pred eeeeEEEECCeEEEEcCcCCCCC----------------CCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEc
Q psy2979 286 SGAAICALDSCIYVLGGWHASTE----------------NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLG 349 (400)
Q Consensus 286 ~~~~~~~~~~~iyv~GG~~~~~~----------------~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~G 349 (400)
..+.+++++++||++||.+.... ...++++||+++++|+.+++||.+|..+++++++++|||+|
T Consensus 249 ~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~G 328 (346)
T TIGR03547 249 AGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIG 328 (346)
T ss_pred cEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEe
Confidence 35557888999999999753110 02478999999999999999999999888888999999999
Q ss_pred CccCCCCCCCeEEEEE
Q psy2979 350 GEEGWDGYHDSIECYD 365 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd 365 (400)
|.+......++|+.|.
T Consensus 329 G~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 329 GENSGGKAVTDVYLLS 344 (346)
T ss_pred ccCCCCCEeeeEEEEE
Confidence 9844445677787663
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=5.9e-37 Score=284.36 Aligned_cols=260 Identities=17% Similarity=0.245 Sum_probs=208.0
Q ss_pred CCcEEEEEeccCCCcccceEEEEEcC--CCceEEccCCc-ccceeeeEEEECCeEEEEE---ee---------cCEEEEE
Q psy2979 108 SINVIIAVGGEDDKVVLRSVEGFCVK--TKVWKTLSCLP-FAISKHGLVVSGRNTIYCL---DI---------VDIVYVA 172 (400)
Q Consensus 108 ~~~~i~~~gg~~~~~~~~~~~~yd~~--~~~w~~~~~~~-~~~~~~~~~~~~~~~iyv~---~~---------~~~~~~y 172 (400)
+.+.++++||... ...+.||+. +++|..++++| .+|..++++++++. ||++ .. .+.+++|
T Consensus 37 ~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~-IYV~GG~~~~~~~~~~~~~~~v~~Y 111 (376)
T PRK14131 37 DNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGK-LYVFGGIGKTNSEGSPQVFDDVYKY 111 (376)
T ss_pred ECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCE-EEEEcCCCCCCCCCceeEcccEEEE
Confidence 4589999999642 357888876 47899999987 58888999999999 9999 11 3579999
Q ss_pred ECCCCCeEEccC-CCCcceeeeEEE-ECCEEEEEcccCCC----------------------------------CCCCeE
Q psy2979 173 ASMHKILHSLGS-LKFDFDVSGIAM-LDGFVYAVGGWDGS----------------------------------CRLDSV 216 (400)
Q Consensus 173 d~~~~~w~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~----------------------------------~~~~~v 216 (400)
|+.+++|..+++ +|.++..+++++ .+++||++||.... ...+++
T Consensus 112 D~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v 191 (376)
T PRK14131 112 DPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEV 191 (376)
T ss_pred eCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceE
Confidence 999999999986 466677777766 79999999997531 024689
Q ss_pred EEEeCCCCceEEccCCCC-cccccEEEEeCCEEEEEcCccccCCCCcceE--EEEeCCCCceeeccCCCCCcee------
Q psy2979 217 ERYDPTKNEWSYIEPMKL-AVTSPAVVAHEGMLYVTGGAILEDGDGIEQV--QRYNPKVNQWQDLAPMLIPRSG------ 287 (400)
Q Consensus 217 ~~yd~~~~~W~~~~~l~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v--~~yd~~~~~W~~~~~~~~~r~~------ 287 (400)
++||+.+++|+.++++|. ++..++++.++++||++||.... +.....+ +.||+.+++|+.+++||.+|..
T Consensus 192 ~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~-~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~ 270 (376)
T PRK14131 192 LSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKP-GLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGV 270 (376)
T ss_pred EEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECC-CcCChhheEEEecCCCcceeecCCCCCCCcCCcCCcc
Confidence 999999999999999996 78888899999999999997311 1113333 4568899999999999887642
Q ss_pred --eeEEEECCeEEEEcCcCCCCC----------------CCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEc
Q psy2979 288 --AAICALDSCIYVLGGWHASTE----------------NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLG 349 (400)
Q Consensus 288 --~~~~~~~~~iyv~GG~~~~~~----------------~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~G 349 (400)
+.+++++++||++||.+.... ....+++||+.+++|+.+++||.+|..+++++++++|||+|
T Consensus 271 ~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~G 350 (376)
T PRK14131 271 AGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIG 350 (376)
T ss_pred ceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCEEEEEc
Confidence 335678999999999753210 01357899999999999999999999999999999999999
Q ss_pred CccCCCCCCCeEEEEECCCCcEEE
Q psy2979 350 GEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
|........++|++|++++++|+.
T Consensus 351 G~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 351 GETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CCCCCCcEeeeEEEEEEcCCEEEE
Confidence 983334567899999999988875
No 17
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.5e-36 Score=288.65 Aligned_cols=257 Identities=19% Similarity=0.301 Sum_probs=212.1
Q ss_pred CCcEEEEEeccCC--CcccceEEEEEcCCCceEEccC---Ccc-cceeeeEEEECCeEEEEE------eecCEEEEEECC
Q psy2979 108 SINVIIAVGGEDD--KVVLRSVEGFCVKTKVWKTLSC---LPF-AISKHGLVVSGRNTIYCL------DIVDIVYVAASM 175 (400)
Q Consensus 108 ~~~~i~~~gg~~~--~~~~~~~~~yd~~~~~w~~~~~---~~~-~~~~~~~~~~~~~~iyv~------~~~~~~~~yd~~ 175 (400)
+.+.|+++||... ....+++++||+.+++|..++. +|. .|..|+++++++. ||++ ...+++++||+.
T Consensus 174 ~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~-lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 174 VGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGST-LYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred ECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCE-EEEECCCCCCCCCccEEEEECC
Confidence 3578999999752 2234679999999999998764 343 3567888999999 9999 345789999999
Q ss_pred CCCeEEccCC---CCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC---CCCcccccEEEEeCCEEE
Q psy2979 176 HKILHSLGSL---KFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP---MKLAVTSPAVVAHEGMLY 249 (400)
Q Consensus 176 ~~~w~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---l~~~~~~~~~~~~~~~iy 249 (400)
+++|..++++ |.+|..|+++..+++||++||.+.....+++++||+.+++|+.+++ +|.+|..|++++++++||
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiy 332 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVW 332 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEE
Confidence 9999999887 7899999999999999999999877778899999999999999874 678899999999999999
Q ss_pred EEcCccccCCCCcceEEEEeCCCCceeeccCC---CCCceeeeEEEECCeEEEEcCcCCC--------CCCCCeEEEEEC
Q psy2979 250 VTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM---LIPRSGAAICALDSCIYVLGGWHAS--------TENTNRVECYHI 318 (400)
Q Consensus 250 v~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~v~~yd~ 318 (400)
++||. ++...+++++||+.+++|+.++++ |.+|..|++++++++||++||.... ....+++++||+
T Consensus 333 viGG~---~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~ 409 (470)
T PLN02193 333 VVYGF---NGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT 409 (470)
T ss_pred EEECC---CCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEc
Confidence 99998 554467899999999999999765 8899999999999999999997531 111468999999
Q ss_pred CCCeEEEccCC------cCccCcceEE--EEC--CEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 319 AENTWEYKSPM------KEKRYRPGIA--VID--GKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 319 ~~~~W~~~~~~------~~~~~~~~~~--~~~--~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
.+++|+.++.+ |.+|..++++ .+. +.|+++||..+.+...+++|+|++.+
T Consensus 410 ~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 410 ETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence 99999998743 5666655432 233 45999999954567789999998764
No 18
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=295.09 Aligned_cols=372 Identities=20% Similarity=0.338 Sum_probs=270.7
Q ss_pred cCceeceEEEE--CCeEEehhhHHHhhcCcccccc-------ceeecCCCCHH---HHHHHhhhcccccCchhHHHHHHH
Q psy2979 14 NNEFCDVTLCV--DGSKFPAHRVVLAASSPYFKVL-------ETIRLPQLSPY---FLHDCVEQCAIIKNNPQCAQLVEE 81 (400)
Q Consensus 14 ~~~~~Dv~l~~--~~~~~~~hr~vLaa~s~yf~~m-------~~vrl~~l~~~---~l~~~i~~~~l~~~~~~c~~~l~~ 81 (400)
++.||||+|.+ +|+.|+|||.|||++|+||++| ..|+|+. +++ .|++++|++++..+.+++.+++.+
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~ 84 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDILSI 84 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCCCceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHHHH
Confidence 78999999998 9999999999999999999998 4588888 887 677899999998888899999999
Q ss_pred HHhcCCCcccccccC--CCCcCcCCCCCC--------------------------------------CcEEEEEeccCCC
Q psy2979 82 AKLFHLLPDRRSAHI--TPRTKPRKSAGS--------------------------------------INVIIAVGGEDDK 121 (400)
Q Consensus 82 a~~~~~~~~~~~~~~--~~~~~~r~~~~~--------------------------------------~~~i~~~gg~~~~ 121 (400)
|..+++......+.. .....+.+|.++ +.+..++.. +..
T Consensus 85 A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~~-~~L 163 (534)
T PHA03098 85 ANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILSD-DKL 163 (534)
T ss_pred HHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcC-CCc
Confidence 988765443321100 000000000000 000000000 000
Q ss_pred cccceEEEEEcCCCceE------------------EccCC---------------------------------------c
Q psy2979 122 VVLRSVEGFCVKTKVWK------------------TLSCL---------------------------------------P 144 (400)
Q Consensus 122 ~~~~~~~~yd~~~~~w~------------------~~~~~---------------------------------------~ 144 (400)
...++..+|+.. -+|. +++.+ .
T Consensus 164 ~v~~E~~v~~av-~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (534)
T PHA03098 164 NVSSEDVVLEII-IKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKI 242 (534)
T ss_pred CcCCHHHHHHHH-HHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCC
Confidence 000000000000 0000 00000 0
Q ss_pred ccceeeeEEEECCeEEEEE----eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCC-CCCeEEEE
Q psy2979 145 FAISKHGLVVSGRNTIYCL----DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSC-RLDSVERY 219 (400)
Q Consensus 145 ~~~~~~~~~~~~~~~iyv~----~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~y 219 (400)
.++.. ..+.. +++. .....+..|++.+++|..+++++. +..++++++++.||++||..+.. ..+++++|
T Consensus 243 ~~~~~----~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~y 316 (534)
T PHA03098 243 LPRSS----TFGSI-IYIHITMSIFTYNYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSY 316 (534)
T ss_pred CcCcc----CCCcc-eEeecccchhhceeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEE
Confidence 00000 00111 2221 112345678888899998877664 34468888999999999987543 45789999
Q ss_pred eCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEE
Q psy2979 220 DPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIY 298 (400)
Q Consensus 220 d~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy 298 (400)
|+.+++|..+++||.+|..+++++++++||++||. ++.. .+++++||+.+++|+.+++||.+|..++++.++++||
T Consensus 317 d~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~---~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iY 393 (534)
T PHA03098 317 DTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGI---YNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIY 393 (534)
T ss_pred eCCCCeeeECCCCCcccccceEEEECCEEEEEeCC---CCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEE
Confidence 99999999999999999999999999999999998 5444 7889999999999999999999999999999999999
Q ss_pred EEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCC---CCCeEEEEECCCCcEEEec
Q psy2979 299 VLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG---YHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 299 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~---~~~~v~~yd~~~~~W~~~~ 375 (400)
++||........+++++|||.+++|+.++++|.+|..+++++++++||++||. .... ..+.+++|||++++|+.++
T Consensus 394 v~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 394 VIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGI-SYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred EECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCc-cCCCCCcccceEEEecCCCCceeeCC
Confidence 99997544332689999999999999999999999999999999999999997 3322 2467999999999999999
Q ss_pred CCCCCCCceeeEEEccccccccc
Q psy2979 376 HLPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 376 ~~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
.+|.+|..+++++++++.|++.|
T Consensus 473 ~~~~~r~~~~~~~~~~~iyv~GG 495 (534)
T PHA03098 473 SLNFPRINASLCIFNNKIYVVGG 495 (534)
T ss_pred CCCcccccceEEEECCEEEEEcC
Confidence 99999999999999887776543
No 19
>KOG4693|consensus
Probab=100.00 E-value=2.3e-34 Score=236.04 Aligned_cols=260 Identities=17% Similarity=0.257 Sum_probs=215.2
Q ss_pred ceEEccCCcccceeeeEEEECCeEEEEE-----------eecCEEEEEECCCCCeEEccC-------------CCCccee
Q psy2979 136 VWKTLSCLPFAISKHGLVVSGRNTIYCL-----------DIVDIVYVAASMHKILHSLGS-------------LKFDFDV 191 (400)
Q Consensus 136 ~w~~~~~~~~~~~~~~~~~~~~~~iyv~-----------~~~~~~~~yd~~~~~w~~~~~-------------~~~~r~~ 191 (400)
.|+..-.--..|-.|+++.++.. ||.+ ...-++..+|..+-+|+++++ .|-.|++
T Consensus 3 ~WTVHLeGGPrRVNHAavaVG~r-iYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYG 81 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAVGSR-IYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYG 81 (392)
T ss_pred eEEEEecCCcccccceeeeecce-EEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcC
Confidence 46543333346778999999999 9999 333468889999999999876 1335999
Q ss_pred eeEEEECCEEEEEcccCCC-CCCCeEEEEeCCCCceEEcc---CCCCcccccEEEEeCCEEEEEcCccccCCCC--cceE
Q psy2979 192 SGIAMLDGFVYAVGGWDGS-CRLDSVERYDPTKNEWSYIE---PMKLAVTSPAVVAHEGMLYVTGGAILEDGDG--IEQV 265 (400)
Q Consensus 192 ~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~v 265 (400)
|+++..++++|+.||.+.. ..-+.++.|||.+++|.... -+|.+|.+|++++.++.+||+||.. +... ++++
T Consensus 82 HtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye--~~a~~FS~d~ 159 (392)
T KOG4693|consen 82 HTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYE--EDAQRFSQDT 159 (392)
T ss_pred ceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChH--HHHHhhhccc
Confidence 9999999999999999874 44567899999999998763 3789999999999999999999983 2222 8899
Q ss_pred EEEeCCCCceeecc---CCCCCceeeeEEEECCeEEEEcCcCCCCCC--------CCeEEEEECCCCeEEEccC---CcC
Q psy2979 266 QRYNPKVNQWQDLA---PMLIPRSGAAICALDSCIYVLGGWHASTEN--------TNRVECYHIAENTWEYKSP---MKE 331 (400)
Q Consensus 266 ~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~--------~~~v~~yd~~~~~W~~~~~---~~~ 331 (400)
..+|..|.+|+.+. ..|.-|-.|++.++++.+||+||....... .+++..+|..|+.|...++ .|.
T Consensus 160 h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~ 239 (392)
T KOG4693|consen 160 HVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPG 239 (392)
T ss_pred eeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCC
Confidence 99999999999996 345557889999999999999997543321 5688999999999999874 578
Q ss_pred ccCcceEEEECCEEEEEcCccCCC--CCCCeEEEEECCCCcEEEec---CCCCCCCceeeEEEcccccccccC
Q psy2979 332 KRYRPGIAVIDGKIYVLGGEEGWD--GYHDSIECYDVDNDSWEIMS---HLPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 332 ~~~~~~~~~~~~~lyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
+|..|++.+++++||+|||+ .+. .-.+++|+|||.+..|+.+. .-|.+|..+++++.+++.++|.|-
T Consensus 240 GRRSHS~fvYng~~Y~FGGY-ng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 240 GRRSHSTFVYNGKMYMFGGY-NGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGT 311 (392)
T ss_pred cccccceEEEcceEEEeccc-chhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCC
Confidence 99999999999999999998 442 34689999999999999984 579999999999999999888764
No 20
>KOG4693|consensus
Probab=100.00 E-value=2.5e-31 Score=218.23 Aligned_cols=244 Identities=16% Similarity=0.269 Sum_probs=203.2
Q ss_pred CCCcEEEEEeccCCC-----cccceEEEEEcCCCceEEccC-------------CcccceeeeEEEECCeEEEEE-----
Q psy2979 107 GSINVIIAVGGEDDK-----VVLRSVEGFCVKTKVWKTLSC-------------LPFAISKHGLVVSGRNTIYCL----- 163 (400)
Q Consensus 107 ~~~~~i~~~gg~~~~-----~~~~~~~~yd~~~~~w~~~~~-------------~~~~~~~~~~~~~~~~~iyv~----- 163 (400)
.+..+|+-|||+.++ ...-+++++|..+-+|..+++ .|-.|.+|+++..+++ +|+-
T Consensus 21 aVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~-~yvWGGRND 99 (392)
T KOG4693|consen 21 AVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK-AYVWGGRND 99 (392)
T ss_pred eecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcce-EEEEcCccC
Confidence 345899999997633 223478899999999998764 2445889999999999 9998
Q ss_pred --eecCEEEEEECCCCCeEEcc---CCCCcceeeeEEEECCEEEEEcccCC--CCCCCeEEEEeCCCCceEEcc---CCC
Q psy2979 164 --DIVDIVYVAASMHKILHSLG---SLKFDFDVSGIAMLDGFVYAVGGWDG--SCRLDSVERYDPTKNEWSYIE---PMK 233 (400)
Q Consensus 164 --~~~~~~~~yd~~~~~w~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~---~l~ 233 (400)
..-+.+++|||.+++|.+.. -+|.+|.+|+++++++.+|++||+.. +...+++..+|..|-+|+.+. ..|
T Consensus 100 ~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pp 179 (392)
T KOG4693|consen 100 DEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPP 179 (392)
T ss_pred cccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCc
Confidence 34456899999999998643 46889999999999999999999864 356788999999999999985 345
Q ss_pred CcccccEEEEeCCEEEEEcCccccCCC------C-cceEEEEeCCCCceeeccC---CCCCceeeeEEEECCeEEEEcCc
Q psy2979 234 LAVTSPAVVAHEGMLYVTGGAILEDGD------G-IEQVQRYNPKVNQWQDLAP---MLIPRSGAAICALDSCIYVLGGW 303 (400)
Q Consensus 234 ~~~~~~~~~~~~~~iyv~GG~~~~~~~------~-~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~ 303 (400)
.-|..|+++++++.+||+||.....+. . .+.+..+|..|..|.+.++ .|..|..|++.+++++||++||+
T Consensus 180 rwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGY 259 (392)
T KOG4693|consen 180 RWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGY 259 (392)
T ss_pred hhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEeccc
Confidence 667889999999999999998521111 1 5678889999999999863 56889999999999999999999
Q ss_pred CCCCCC-CCeEEEEECCCCeEEEcc---CCcCccCcceEEEECCEEEEEcCc
Q psy2979 304 HASTEN-TNRVECYHIAENTWEYKS---PMKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 304 ~~~~~~-~~~v~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
++.-.. .+++++|||.+..|+.+. ..|.+|..+++++.++++|+|||.
T Consensus 260 ng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 260 NGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGT 311 (392)
T ss_pred chhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCC
Confidence 875321 689999999999999986 578999999999999999999997
No 21
>KOG0379|consensus
Probab=99.96 E-value=5.9e-28 Score=229.03 Aligned_cols=248 Identities=18% Similarity=0.291 Sum_probs=213.1
Q ss_pred CCcccceeeeEEEECCeEEEEE------eecC--EEEEEECCCCCeEEccC---CCCcceeeeEEEECCEEEEEcccCC-
Q psy2979 142 CLPFAISKHGLVVSGRNTIYCL------DIVD--IVYVAASMHKILHSLGS---LKFDFDVSGIAMLDGFVYAVGGWDG- 209 (400)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~iyv~------~~~~--~~~~yd~~~~~w~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~- 209 (400)
..|.+|..|+++..++. +||+ .... +++.+|..+..|..... .|.+|.+++++.++++||++||.+.
T Consensus 56 ~~p~~R~~hs~~~~~~~-~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~ 134 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNK-LYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK 134 (482)
T ss_pred CCcchhhccceeEECCE-EEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence 45788999999999999 9999 2233 59999999999987553 5688999999999999999999984
Q ss_pred CCCCCeEEEEeCCCCceEEcc---CCCCcccccEEEEeCCEEEEEcCccccCCCC--cceEEEEeCCCCceeecc---CC
Q psy2979 210 SCRLDSVERYDPTKNEWSYIE---PMKLAVTSPAVVAHEGMLYVTGGAILEDGDG--IEQVQRYNPKVNQWQDLA---PM 281 (400)
Q Consensus 210 ~~~~~~v~~yd~~~~~W~~~~---~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~v~~yd~~~~~W~~~~---~~ 281 (400)
....++++.||+.+++|..+. ..|.+|.+|+++++++++||+||. +... .+++++||+.+.+|.++. +.
T Consensus 135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~---~~~~~~~ndl~i~d~~~~~W~~~~~~g~~ 211 (482)
T KOG0379|consen 135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGI---GGTGDSLNDLHIYDLETSTWSELDTQGEA 211 (482)
T ss_pred CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCc---cCcccceeeeeeeccccccceecccCCCC
Confidence 556789999999999999885 368999999999999999999999 5444 899999999999999985 67
Q ss_pred CCCceeeeEEEECCeEEEEcCcC-CCCCCCCeEEEEECCCCeEEEcc---CCcCccCcceEEEECCEEEEEcCccCCCC-
Q psy2979 282 LIPRSGAAICALDSCIYVLGGWH-ASTENTNRVECYHIAENTWEYKS---PMKEKRYRPGIAVIDGKIYVLGGEEGWDG- 356 (400)
Q Consensus 282 ~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~v~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~lyv~GG~~~~~~- 356 (400)
|.||.+|++++++++++++||.+ +... .++++.+|..+.+|..+. ..|.+|.+|..++.+.+++++||......
T Consensus 212 P~pR~gH~~~~~~~~~~v~gG~~~~~~~-l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~ 290 (482)
T KOG0379|consen 212 PSPRYGHAMVVVGNKLLVFGGGDDGDVY-LNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQE 290 (482)
T ss_pred CCCCCCceEEEECCeEEEEeccccCCce-ecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccc
Confidence 88999999999999999999988 4444 899999999999999765 57899999999999999999999833223
Q ss_pred CCCeEEEEECCCCcEEEecC----CCCCCCceeeEEEccccc
Q psy2979 357 YHDSIECYDVDNDSWEIMSH----LPSARSWLGCVPLQIHKS 394 (400)
Q Consensus 357 ~~~~v~~yd~~~~~W~~~~~----~~~~r~~~~~~~~~~~~~ 394 (400)
...++|.||.+++.|..+.. .|.+|..+.++.+.....
T Consensus 291 ~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (482)
T KOG0379|consen 291 PLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGK 332 (482)
T ss_pred cccccccccccccceeeeeccccccccccccccceeeccCCc
Confidence 57899999999999999954 367888888888765443
No 22
>KOG0379|consensus
Probab=99.96 E-value=4e-27 Score=223.32 Aligned_cols=213 Identities=20% Similarity=0.343 Sum_probs=185.1
Q ss_pred CCCCcceeeeEEEECCEEEEEcccCCCCCCC--eEEEEeCCCCceEEcc---CCCCcccccEEEEeCCEEEEEcCccccC
Q psy2979 184 SLKFDFDVSGIAMLDGFVYAVGGWDGSCRLD--SVERYDPTKNEWSYIE---PMKLAVTSPAVVAHEGMLYVTGGAILED 258 (400)
Q Consensus 184 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~v~~yd~~~~~W~~~~---~l~~~~~~~~~~~~~~~iyv~GG~~~~~ 258 (400)
..|.+|..|+++.+++++||+||........ +++.+|..+..|.... ..|.+|++|.++.++++||++||. +
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~---~ 132 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGT---D 132 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccc---c
Confidence 3578899999999999999999987655444 4999999999998764 467899999999999999999999 5
Q ss_pred C-CC-cceEEEEeCCCCceeecc---CCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc---CCc
Q psy2979 259 G-DG-IEQVQRYNPKVNQWQDLA---PMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKS---PMK 330 (400)
Q Consensus 259 ~-~~-~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~~~ 330 (400)
. .. .++++.||+.+.+|..+. .+|.+|.+|+++++++++||+||.+......+++++||+++.+|.++. +.|
T Consensus 133 ~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P 212 (482)
T KOG0379|consen 133 KKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAP 212 (482)
T ss_pred CCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCC
Confidence 3 22 789999999999999886 568899999999999999999998877633899999999999999975 678
Q ss_pred CccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec---CCCCCCCceeeEEEcccccccccC
Q psy2979 331 EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS---HLPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 331 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
.+|.+|++++.+++++++||.+.+....+++|++|..+.+|+.+. .+|.+|++|..+..+++.+++-|+
T Consensus 213 ~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~ 284 (482)
T KOG0379|consen 213 SPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGG 284 (482)
T ss_pred CCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCC
Confidence 899999999999999999998436778999999999999999774 589999999999776665555544
No 23
>KOG1230|consensus
Probab=99.93 E-value=5.9e-25 Score=191.23 Aligned_cols=232 Identities=17% Similarity=0.251 Sum_probs=186.6
Q ss_pred CCcccceeeeEEEE--CCeEEEEE----------eecCEEEEEECCCCCeEEccC--CCCcceeeeEEEE-CCEEEEEcc
Q psy2979 142 CLPFAISKHGLVVS--GRNTIYCL----------DIVDIVYVAASMHKILHSLGS--LKFDFDVSGIAML-DGFVYAVGG 206 (400)
Q Consensus 142 ~~~~~~~~~~~~~~--~~~~iyv~----------~~~~~~~~yd~~~~~w~~~~~--~~~~r~~~~~~~~-~~~iyv~GG 206 (400)
+.|++|+..++.+. .+. |+++ ...+.++.||..+++|..+.+ .|.||+.|.++++ .|.+|++||
T Consensus 62 ~~PspRsn~sl~~nPekeE-LilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEE-LILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCcceeeccCcce-eEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence 45677877666554 334 5555 445789999999999998654 5788999988887 489999999
Q ss_pred cCCC------CCCCeEEEEeCCCCceEEcc--CCCCcccccEEEEeCCEEEEEcCccccCCCC--cceEEEEeCCCCcee
Q psy2979 207 WDGS------CRLDSVERYDPTKNEWSYIE--PMKLAVTSPAVVAHEGMLYVTGGAILEDGDG--IEQVQRYNPKVNQWQ 276 (400)
Q Consensus 207 ~~~~------~~~~~v~~yd~~~~~W~~~~--~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~v~~yd~~~~~W~ 276 (400)
.-.. -...++|.||..+++|+++. .-|.+|++|-+++...+|+++||..-.++.. .+.+++||..+-+|+
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~ 220 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWS 220 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeee
Confidence 7532 24578999999999999984 5789999999999999999999985323333 899999999999999
Q ss_pred eccC---CCCCceeeeEEEE-CCeEEEEcCcCCCC--------CCCCeEEEEECCC-----CeEEEccC---CcCccCcc
Q psy2979 277 DLAP---MLIPRSGAAICAL-DSCIYVLGGWHAST--------ENTNRVECYHIAE-----NTWEYKSP---MKEKRYRP 336 (400)
Q Consensus 277 ~~~~---~~~~r~~~~~~~~-~~~iyv~GG~~~~~--------~~~~~v~~yd~~~-----~~W~~~~~---~~~~~~~~ 336 (400)
++.+ -|.||+++++.+. .|.||+.||+.... ...++++..+|++ -.|+.+.+ -|.+|.++
T Consensus 221 Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgf 300 (521)
T KOG1230|consen 221 KLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGF 300 (521)
T ss_pred eccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCce
Confidence 9964 4789999999999 99999999975321 1167899999988 56888864 57899999
Q ss_pred eEEEE-CCEEEEEcCccC--------CCCCCCeEEEEECCCCcEEEe
Q psy2979 337 GIAVI-DGKIYVLGGEEG--------WDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 337 ~~~~~-~~~lyv~GG~~~--------~~~~~~~v~~yd~~~~~W~~~ 374 (400)
++++. +++-+.|||..+ .....++++.||...++|.+.
T Consensus 301 sv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 301 SVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred eEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 98887 679999999833 123568999999999999976
No 24
>KOG1230|consensus
Probab=99.93 E-value=1.3e-24 Score=189.19 Aligned_cols=217 Identities=21% Similarity=0.310 Sum_probs=179.4
Q ss_pred cCCCCcceeeeEEEE--CCEEEEEcccCCC----CCCCeEEEEeCCCCceEEc--cCCCCcccccEEEEeC-CEEEEEcC
Q psy2979 183 GSLKFDFDVSGIAML--DGFVYAVGGWDGS----CRLDSVERYDPTKNEWSYI--EPMKLAVTSPAVVAHE-GMLYVTGG 253 (400)
Q Consensus 183 ~~~~~~r~~~~~~~~--~~~iyv~GG~~~~----~~~~~v~~yd~~~~~W~~~--~~l~~~~~~~~~~~~~-~~iyv~GG 253 (400)
.+.|.||.++++.+- .+.|+++||.--+ ...+++++||..+++|..+ |+-|.+|+.|.++++. |.+|++||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence 456889999988775 5689999996422 2357899999999999997 5678999999888875 89999999
Q ss_pred ccc-cCCCC---cceEEEEeCCCCceeecc--CCCCCceeeeEEEECCeEEEEcCcCCCCCC---CCeEEEEECCCCeEE
Q psy2979 254 AIL-EDGDG---IEQVQRYNPKVNQWQDLA--PMLIPRSGAAICALDSCIYVLGGWHASTEN---TNRVECYHIAENTWE 324 (400)
Q Consensus 254 ~~~-~~~~~---~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~---~~~v~~yd~~~~~W~ 324 (400)
... +++.. ...+|.||..+++|+++. .-|.+|++|.+++...+|+++||+...... .++|++||..+-+|+
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~ 220 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWS 220 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeee
Confidence 853 22222 678999999999999995 678999999999999999999997554321 689999999999999
Q ss_pred EccC---CcCccCcceEEEE-CCEEEEEcCcc--------CCCCCCCeEEEEECCCC-----cEEEecC---CCCCCCce
Q psy2979 325 YKSP---MKEKRYRPGIAVI-DGKIYVLGGEE--------GWDGYHDSIECYDVDND-----SWEIMSH---LPSARSWL 384 (400)
Q Consensus 325 ~~~~---~~~~~~~~~~~~~-~~~lyv~GG~~--------~~~~~~~~v~~yd~~~~-----~W~~~~~---~~~~r~~~ 384 (400)
.+.+ -|.+|+++.+.+. +|.|||.||+. +.+....++|..+|+.+ .|..+.+ -|.||.++
T Consensus 221 Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgf 300 (521)
T KOG1230|consen 221 KLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGF 300 (521)
T ss_pred eccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCce
Confidence 9864 4789999999998 99999999982 11235678999999883 5777744 58899999
Q ss_pred eeEEEcccccccccC
Q psy2979 385 GCVPLQIHKSQFVDK 399 (400)
Q Consensus 385 ~~~~~~~~~~~~~~~ 399 (400)
++|+..+.+.+++||
T Consensus 301 sv~va~n~kal~FGG 315 (521)
T KOG1230|consen 301 SVAVAKNHKALFFGG 315 (521)
T ss_pred eEEEecCCceEEecc
Confidence 999999999999988
No 25
>KOG4152|consensus
Probab=99.92 E-value=1.1e-23 Score=187.91 Aligned_cols=241 Identities=17% Similarity=0.306 Sum_probs=192.8
Q ss_pred CCCCcEEEEEeccCCCcccceEEEEEcCCCceEEc---cCCcccceeeeEEEECCeEEEEE-------eecCEEEEEECC
Q psy2979 106 AGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTL---SCLPFAISKHGLVVSGRNTIYCL-------DIVDIVYVAASM 175 (400)
Q Consensus 106 ~~~~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~---~~~~~~~~~~~~~~~~~~~iyv~-------~~~~~~~~yd~~ 175 (400)
.-+.++|++|||-+ +...+++++||..+++|..- .++|.+...|+.+..+++ ||+| ..+++++.....
T Consensus 39 VaikELiviFGGGN-EGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtr-ilvFGGMvEYGkYsNdLYELQas 116 (830)
T KOG4152|consen 39 VAIKELIVIFGGGN-EGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTR-ILVFGGMVEYGKYSNDLYELQAS 116 (830)
T ss_pred eeeeeeEEEecCCc-ccchhhhhhhccccceeecchhcCCCCCchhhcceEecCce-EEEEccEeeeccccchHHHhhhh
Confidence 33678999999965 56778999999999999842 478888888999988888 9999 444554433333
Q ss_pred CCCeEEcc-------CCCCcceeeeEEEECCEEEEEcccCCC---------CCCCeEEEEeCCCC----ceEEc---cCC
Q psy2979 176 HKILHSLG-------SLKFDFDVSGIAMLDGFVYAVGGWDGS---------CRLDSVERYDPTKN----EWSYI---EPM 232 (400)
Q Consensus 176 ~~~w~~~~-------~~~~~r~~~~~~~~~~~iyv~GG~~~~---------~~~~~v~~yd~~~~----~W~~~---~~l 232 (400)
.=.|+++. ++|.||.+|+....+++-|+|||..++ .++++++..++.-+ -|... ..+
T Consensus 117 RWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~ 196 (830)
T KOG4152|consen 117 RWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVL 196 (830)
T ss_pred hhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCC
Confidence 33455543 367899999999999999999998532 35677887777744 48664 368
Q ss_pred CCcccccEEEEe------CCEEEEEcCccccCCCCcceEEEEeCCCCceeecc---CCCCCceeeeEEEECCeEEEEcCc
Q psy2979 233 KLAVTSPAVVAH------EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA---PMLIPRSGAAICALDSCIYVLGGW 303 (400)
Q Consensus 233 ~~~~~~~~~~~~------~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~ 303 (400)
|.+|..|+++.+ ..++||+||. .|..+.++|..|..+.+|++.. -.|.||+.|+++.+++++|++||+
T Consensus 197 P~pRESHTAViY~eKDs~~skmvvyGGM---~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGW 273 (830)
T KOG4152|consen 197 PPPRESHTAVIYTEKDSKKSKMVVYGGM---SGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGW 273 (830)
T ss_pred CCCcccceeEEEEeccCCcceEEEEccc---ccccccceeEEecceeecccccccCCCCCCcccccceeecceeEEecce
Confidence 999999999887 3589999998 7766889999999999999875 457889999999999999999996
Q ss_pred CCC--------------CCCCCeEEEEECCCCeEEEcc-------CCcCccCcceEEEECCEEEEEcCcc
Q psy2979 304 HAS--------------TENTNRVECYHIAENTWEYKS-------PMKEKRYRPGIAVIDGKIYVLGGEE 352 (400)
Q Consensus 304 ~~~--------------~~~~~~v~~yd~~~~~W~~~~-------~~~~~~~~~~~~~~~~~lyv~GG~~ 352 (400)
-.- .. .+++.+++..+..|+.+- ..|.+|.+|++++++.++|+-.|.|
T Consensus 274 VPl~~~~~~~~~hekEWkC-Tssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRD 342 (830)
T KOG4152|consen 274 VPLVMDDVKVATHEKEWKC-TSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRD 342 (830)
T ss_pred eeeeccccccccccceeee-ccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccc
Confidence 321 11 578889999999998863 3688999999999999999999983
No 26
>KOG4152|consensus
Probab=99.91 E-value=2.6e-23 Score=185.48 Aligned_cols=259 Identities=17% Similarity=0.251 Sum_probs=201.9
Q ss_pred CceEEc----cCCcccceeeeEEEECCeEEEEE-----eecCEEEEEECCCCCeEE---ccCCCCcceeeeEEEECCEEE
Q psy2979 135 KVWKTL----SCLPFAISKHGLVVSGRNTIYCL-----DIVDIVYVAASMHKILHS---LGSLKFDFDVSGIAMLDGFVY 202 (400)
Q Consensus 135 ~~w~~~----~~~~~~~~~~~~~~~~~~~iyv~-----~~~~~~~~yd~~~~~w~~---~~~~~~~r~~~~~~~~~~~iy 202 (400)
-+|++. .+.|.+|.+|-++++... |.+| ...+++..||..+++|.. ..+.|.+-..|+.+..+.+||
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikEL-iviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtril 95 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKEL-IVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRIL 95 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeee-EEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEE
Confidence 368766 356788899999999888 8888 556778999999999974 345777788889998999999
Q ss_pred EEcccCCCC-CCCeEEEEeCCCCce--EEcc-------CCCCcccccEEEEeCCEEEEEcCccccCC--CC-----cceE
Q psy2979 203 AVGGWDGSC-RLDSVERYDPTKNEW--SYIE-------PMKLAVTSPAVVAHEGMLYVTGGAILEDG--DG-----IEQV 265 (400)
Q Consensus 203 v~GG~~~~~-~~~~v~~yd~~~~~W--~~~~-------~l~~~~~~~~~~~~~~~iyv~GG~~~~~~--~~-----~~~v 265 (400)
+|||..+.+ +.++ .|.++..+| ..+. +.|-+|-+|+...++++-|+|||...+.. .. ++++
T Consensus 96 vFGGMvEYGkYsNd--LYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDl 173 (830)
T KOG4152|consen 96 VFGGMVEYGKYSND--LYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDL 173 (830)
T ss_pred EEccEeeeccccch--HHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcce
Confidence 999986542 3333 456666554 4442 36679999999999999999999853111 11 7788
Q ss_pred EEEeCCCC----ceeec---cCCCCCceeeeEEEE------CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc---CC
Q psy2979 266 QRYNPKVN----QWQDL---APMLIPRSGAAICAL------DSCIYVLGGWHASTENTNRVECYHIAENTWEYKS---PM 329 (400)
Q Consensus 266 ~~yd~~~~----~W~~~---~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~~ 329 (400)
+..+..-. .|... ..+|.+|..|+++.+ ..++|++||.++-. +.++|..|.++-.|.+.. ..
T Consensus 174 Y~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R--LgDLW~Ldl~Tl~W~kp~~~G~~ 251 (830)
T KOG4152|consen 174 YILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR--LGDLWTLDLDTLTWNKPSLSGVA 251 (830)
T ss_pred EEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc--ccceeEEecceeecccccccCCC
Confidence 88877633 38765 378999999999988 34899999986644 789999999999999864 46
Q ss_pred cCccCcceEEEECCEEEEEcCcc-----CCC--------CCCCeEEEEECCCCcEEEec-------CCCCCCCceeeEEE
Q psy2979 330 KEKRYRPGIAVIDGKIYVLGGEE-----GWD--------GYHDSIECYDVDNDSWEIMS-------HLPSARSWLGCVPL 389 (400)
Q Consensus 330 ~~~~~~~~~~~~~~~lyv~GG~~-----~~~--------~~~~~v~~yd~~~~~W~~~~-------~~~~~r~~~~~~~~ 389 (400)
|.+|..|+++.+++|+|||||+- +.. .-.+++-++++.+..|..+- ..|.+|.+|+++.+
T Consensus 252 PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAi 331 (830)
T KOG4152|consen 252 PLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAI 331 (830)
T ss_pred CCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEe
Confidence 78999999999999999999971 110 12456778999999999772 37889999999999
Q ss_pred ccccccccc
Q psy2979 390 QIHKSQFVD 398 (400)
Q Consensus 390 ~~~~~~~~~ 398 (400)
+.+.|+.-|
T Consensus 332 gtRlYiWSG 340 (830)
T KOG4152|consen 332 GTRLYIWSG 340 (830)
T ss_pred ccEEEEEec
Confidence 999998654
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.85 E-value=1.3e-19 Score=155.97 Aligned_cols=257 Identities=20% Similarity=0.325 Sum_probs=192.0
Q ss_pred EccCCcccceeeeEEEECCeEEEEE--eecCEEEEEECCC--CCeEEccCCC-CcceeeeEEEECCEEEEEcccCCC---
Q psy2979 139 TLSCLPFAISKHGLVVSGRNTIYCL--DIVDIVYVAASMH--KILHSLGSLK-FDFDVSGIAMLDGFVYAVGGWDGS--- 210 (400)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~iyv~--~~~~~~~~yd~~~--~~w~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~--- 210 (400)
++|++|.+-..-+-+..++. +||. +.....+..|+.. ..|++++..| .+|.....++++++||++||....
T Consensus 29 ~lPdlPvg~KnG~Ga~ig~~-~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~ 107 (381)
T COG3055 29 QLPDLPVGFKNGAGALIGDT-VYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSS 107 (381)
T ss_pred cCCCCCccccccccceecce-EEEEeccCCccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCC
Confidence 46788877666677777887 9998 5566777777764 5799999987 578888899999999999998532
Q ss_pred --CCCCeEEEEeCCCCceEEccC-CCCcccccEEEEeCC-EEEEEcCccc--cCCC------------------------
Q psy2979 211 --CRLDSVERYDPTKNEWSYIEP-MKLAVTSPAVVAHEG-MLYVTGGAIL--EDGD------------------------ 260 (400)
Q Consensus 211 --~~~~~v~~yd~~~~~W~~~~~-l~~~~~~~~~~~~~~-~iyv~GG~~~--~~~~------------------------ 260 (400)
...+++++|||.+++|+.+.. .|.....+.++.+++ +||++||... .++.
T Consensus 108 ~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~ 187 (381)
T COG3055 108 SPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDK 187 (381)
T ss_pred CceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCC
Confidence 346789999999999999864 677788889999888 9999999731 0100
Q ss_pred -----C-cceEEEEeCCCCceeeccCCC-CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCC--CeEEEccCCcC
Q psy2979 261 -----G-IEQVQRYNPKVNQWQDLAPML-IPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAE--NTWEYKSPMKE 331 (400)
Q Consensus 261 -----~-~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~~~~~~ 331 (400)
. ...+..|||++++|+.+...| .++++++.+.-++++.++-|.-...-.+..+.+++... -+|..++++|.
T Consensus 188 ~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~ 267 (381)
T COG3055 188 KAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPA 267 (381)
T ss_pred CHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCC
Confidence 1 467899999999999998776 56677666666888999988765554366777777764 47999998886
Q ss_pred ccCcc-------eEEEECCEEEEEcCccC--------------C----CCCCCeEEEEECCCCcEEEecCCCCCCCceee
Q psy2979 332 KRYRP-------GIAVIDGKIYVLGGEEG--------------W----DGYHDSIECYDVDNDSWEIMSHLPSARSWLGC 386 (400)
Q Consensus 332 ~~~~~-------~~~~~~~~lyv~GG~~~--------------~----~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~ 386 (400)
+.... -.-..++.+.+.||..- + ....++|+.+| .+.|+.++.||.++....+
T Consensus 268 ~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s 345 (381)
T COG3055 268 PIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVS 345 (381)
T ss_pred CCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEE
Confidence 54322 12234788888888620 0 12467899999 8999999999997776666
Q ss_pred EEEcccccccccC
Q psy2979 387 VPLQIHKSQFVDK 399 (400)
Q Consensus 387 ~~~~~~~~~~~~~ 399 (400)
...++ .++++||
T Consensus 346 ~~~nn-~vl~IGG 357 (381)
T COG3055 346 LSYNN-KVLLIGG 357 (381)
T ss_pred EecCC-cEEEEcc
Confidence 66555 5555555
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=7.5e-17 Score=139.16 Aligned_cols=236 Identities=19% Similarity=0.258 Sum_probs=172.7
Q ss_pred EEEEEcCC--CceEEccCCc-ccceeeeEEEECCeEEEEE-----------eecCEEEEEECCCCCeEEccCC-CCccee
Q psy2979 127 VEGFCVKT--KVWKTLSCLP-FAISKHGLVVSGRNTIYCL-----------DIVDIVYVAASMHKILHSLGSL-KFDFDV 191 (400)
Q Consensus 127 ~~~yd~~~--~~w~~~~~~~-~~~~~~~~~~~~~~~iyv~-----------~~~~~~~~yd~~~~~w~~~~~~-~~~r~~ 191 (400)
.+..|++. ..|+++...| .+|.....++++++ ||++ ...++++.|||..++|.++... |.....
T Consensus 60 fy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~k-LyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G 138 (381)
T COG3055 60 FYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGK-LYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVG 138 (381)
T ss_pred ceehhhhcCCCCceEcccCCCcccccchheeeCCe-EEEeeccccCCCCCceEeeeeEEecCCCChhheecccccccccc
Confidence 44445443 4699999988 67888888899999 9999 4557899999999999998864 556677
Q ss_pred eeEEEECC-EEEEEcccCC----------------------------------CCCCCeEEEEeCCCCceEEccCCC-Cc
Q psy2979 192 SGIAMLDG-FVYAVGGWDG----------------------------------SCRLDSVERYDPTKNEWSYIEPMK-LA 235 (400)
Q Consensus 192 ~~~~~~~~-~iyv~GG~~~----------------------------------~~~~~~v~~yd~~~~~W~~~~~l~-~~ 235 (400)
++.+.+++ +||++||.+. ......+..|||.+++|+.+...| .+
T Consensus 139 ~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~ 218 (381)
T COG3055 139 ASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYG 218 (381)
T ss_pred ceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccC
Confidence 78888887 9999999751 012456889999999999998777 45
Q ss_pred ccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCC--CCceeeccCCCCCce-------eeeEEEECCeEEEEcCcCCC
Q psy2979 236 VTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPK--VNQWQDLAPMLIPRS-------GAAICALDSCIYVLGGWHAS 306 (400)
Q Consensus 236 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~r~-------~~~~~~~~~~iyv~GG~~~~ 306 (400)
+++.+.+.-++++.++-|... ++-.+..+.+++.. ..+|..++++|.+.. ++-....++.+.+.||.+-.
T Consensus 219 ~aGsa~~~~~n~~~lInGEiK-pGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~ 297 (381)
T COG3055 219 NAGSAVVIKGNKLTLINGEIK-PGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFP 297 (381)
T ss_pred ccCcceeecCCeEEEEcceec-CCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCCh
Confidence 566555555777988988732 11115566777665 456999988775543 22233447888898885421
Q ss_pred CCC------------------CCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEEC
Q psy2979 307 TEN------------------TNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 307 ~~~------------------~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~ 366 (400)
+.. .+.|+.+| ++.|+.+..+|.++.+...+..+++||++||++.+...+..|+....
T Consensus 298 Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~~ 373 (381)
T COG3055 298 GALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLSW 373 (381)
T ss_pred hHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEEEecCCcEEEEccccCCCeeeeeEEEEEE
Confidence 100 46788888 99999999999988877788889999999999555555566665433
No 29
>KOG2437|consensus
Probab=99.38 E-value=3.4e-13 Score=121.17 Aligned_cols=181 Identities=20% Similarity=0.289 Sum_probs=137.3
Q ss_pred CCcceeeeEEEECC--EEEEEcccCCCCCCCeEEEEeCCCCceEEcc---CCCCcccccEEEEeCC--EEEEEcCccccC
Q psy2979 186 KFDFDVSGIAMLDG--FVYAVGGWDGSCRLDSVERYDPTKNEWSYIE---PMKLAVTSPAVVAHEG--MLYVTGGAILED 258 (400)
Q Consensus 186 ~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~l~~~~~~~~~~~~~~--~iyv~GG~~~~~ 258 (400)
|..|.+|-++...+ .||+.||+++...+.+.|.|+...++|+.+. ..|..|.+|.++..-. ++|+.|-.....
T Consensus 258 p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS 337 (723)
T KOG2437|consen 258 PGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSS 337 (723)
T ss_pred ccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccc
Confidence 45688898888755 9999999999999999999999999999874 4789999999988655 999999764211
Q ss_pred CC---C-cceEEEEeCCCCceeecc------CCCCCceeeeEEEECCe--EEEEcCcCC--CCCCCCeEEEEECCCCeEE
Q psy2979 259 GD---G-IEQVQRYNPKVNQWQDLA------PMLIPRSGAAICALDSC--IYVLGGWHA--STENTNRVECYHIAENTWE 324 (400)
Q Consensus 259 ~~---~-~~~v~~yd~~~~~W~~~~------~~~~~r~~~~~~~~~~~--iyv~GG~~~--~~~~~~~v~~yd~~~~~W~ 324 (400)
.. . ..++|+||..++.|.-+. .-|...+.|++++.+++ ||++||..- ......-++.||.....|.
T Consensus 338 ~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~ 417 (723)
T KOG2437|consen 338 VRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWK 417 (723)
T ss_pred cccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHH
Confidence 11 1 568999999999999874 34566788999999877 999999643 2222567999999999999
Q ss_pred EccCCc----------CccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECC
Q psy2979 325 YKSPMK----------EKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVD 367 (400)
Q Consensus 325 ~~~~~~----------~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~ 367 (400)
.+..-. ..|.+|.+-.+ ++++|++||. ......+-..+||+.
T Consensus 418 ~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq-~s~~El~L~f~y~I~ 471 (723)
T KOG2437|consen 418 LLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQ-RSKTELNLFFSYDID 471 (723)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCc-ccceEEeehhcceec
Confidence 876321 24555665555 6789999997 554444445566543
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.38 E-value=1.7e-12 Score=83.02 Aligned_cols=49 Identities=37% Similarity=0.792 Sum_probs=45.0
Q ss_pred ccCcceEEEECCEEEEEcCccCC-CCCCCeEEEEECCCCcEEEecCCCCCC
Q psy2979 332 KRYRPGIAVIDGKIYVLGGEEGW-DGYHDSIECYDVDNDSWEIMSHLPSAR 381 (400)
Q Consensus 332 ~~~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~r 381 (400)
+|..+++++++++|||+||. .. ....+++++||+++++|+.+++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~-~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGY-DNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCC-CCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 57889999999999999999 54 677899999999999999999999987
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.35 E-value=2.7e-12 Score=82.02 Aligned_cols=49 Identities=31% Similarity=0.579 Sum_probs=45.8
Q ss_pred cceeeeEEEECCEEEEEcccCC-CCCCCeEEEEeCCCCceEEccCCCCcc
Q psy2979 188 DFDVSGIAMLDGFVYAVGGWDG-SCRLDSVERYDPTKNEWSYIEPMKLAV 236 (400)
Q Consensus 188 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~l~~~~ 236 (400)
||..++++.++++|||+||..+ ....+++++||+.+++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6889999999999999999987 678899999999999999999999886
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.16 E-value=3.7e-11 Score=75.75 Aligned_cols=46 Identities=33% Similarity=0.660 Sum_probs=42.5
Q ss_pred cceeeeEEEECCEEEEEcccCC-CCCCCeEEEEeCCCCceEEccCCC
Q psy2979 188 DFDVSGIAMLDGFVYAVGGWDG-SCRLDSVERYDPTKNEWSYIEPMK 233 (400)
Q Consensus 188 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~l~ 233 (400)
||..+++++++++||++||.++ ....+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6899999999999999999988 678899999999999999999886
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.15 E-value=5.5e-11 Score=74.97 Aligned_cols=47 Identities=34% Similarity=0.698 Sum_probs=41.7
Q ss_pred ccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCC
Q psy2979 332 KRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP 378 (400)
Q Consensus 332 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 378 (400)
+|..+++++++++|||+||.+......+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 57889999999999999999443678899999999999999999886
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.14 E-value=1.2e-10 Score=73.94 Aligned_cols=48 Identities=25% Similarity=0.522 Sum_probs=43.1
Q ss_pred CCEEEEEcCcc-CCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEE
Q psy2979 342 DGKIYVLGGEE-GWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPL 389 (400)
Q Consensus 342 ~~~lyv~GG~~-~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 389 (400)
+++|||+||.+ ......+++|+||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 58999999993 2566789999999999999999999999999999975
No 35
>KOG2437|consensus
Probab=99.13 E-value=3.7e-11 Score=108.29 Aligned_cols=175 Identities=22% Similarity=0.269 Sum_probs=131.3
Q ss_pred CCCceEEccC----------CCCcccccEEEEeCC--EEEEEcCccccCCCC-cceEEEEeCCCCceeecc---CCCCCc
Q psy2979 222 TKNEWSYIEP----------MKLAVTSPAVVAHEG--MLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLA---PMLIPR 285 (400)
Q Consensus 222 ~~~~W~~~~~----------l~~~~~~~~~~~~~~--~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~---~~~~~r 285 (400)
-+-.|+++++ -|..|.+|.++...+ .||+.||. +|-. +.+.|.|+...++|+.+. ..|..|
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGW---dG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~R 313 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGW---DGTQDLADFWAYSVKENQWTCINRDTEGPGAR 313 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCc---ccchhHHHHHhhcCCcceeEEeecCCCCCcch
Confidence 3557887753 346789999988765 99999999 8887 889999999999999885 478889
Q ss_pred eeeeEEEECC--eEEEEcCcCCCCC-----CCCeEEEEECCCCeEEEcc------CCcCccCcceEEEECCE--EEEEcC
Q psy2979 286 SGAAICALDS--CIYVLGGWHASTE-----NTNRVECYHIAENTWEYKS------PMKEKRYRPGIAVIDGK--IYVLGG 350 (400)
Q Consensus 286 ~~~~~~~~~~--~iyv~GG~~~~~~-----~~~~v~~yd~~~~~W~~~~------~~~~~~~~~~~~~~~~~--lyv~GG 350 (400)
..|.++.... ++|++|-+-+... ...++|+||..++.|..+. .-|...+.|++++.+++ |||+||
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecC
Confidence 9999998744 9999996533221 1568999999999999875 24566788999999877 999999
Q ss_pred cc--CCCCCCCeEEEEECCCCcEEEecCC----------CCCCCceeeEEEcccccccccC
Q psy2979 351 EE--GWDGYHDSIECYDVDNDSWEIMSHL----------PSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 351 ~~--~~~~~~~~v~~yd~~~~~W~~~~~~----------~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
.. ........++.||.....|+.+..- ...|.+|++-...+....+++|
T Consensus 394 r~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fg 454 (723)
T KOG2437|consen 394 RILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFG 454 (723)
T ss_pred eeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEecc
Confidence 72 1223456799999999999987531 2245566655554444444444
No 36
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.12 E-value=1.2e-10 Score=88.66 Aligned_cols=82 Identities=35% Similarity=0.538 Sum_probs=69.1
Q ss_pred HHHHHhcCceeceEEEEC-CeEEehhhHHHhhcCcccccc-----------ceeecCCCCHH---HHHHHhhhcccccC-
Q psy2979 8 FNEARKNNEFCDVTLCVD-GSKFPAHRVVLAASSPYFKVL-----------ETIRLPQLSPY---FLHDCVEQCAIIKN- 71 (400)
Q Consensus 8 l~~~r~~~~~~Dv~l~~~-~~~~~~hr~vLaa~s~yf~~m-----------~~vrl~~l~~~---~l~~~i~~~~l~~~- 71 (400)
|+++++++.++|++|.++ ++.|++||.+|++.|+||+.| ..|.++.++++ .+++++|++++...
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 789999999999999999 799999999999999999877 25778999998 57788899988776
Q ss_pred chhHHHHHHHHHhcCCCc
Q psy2979 72 NPQCAQLVEEAKLFHLLP 89 (400)
Q Consensus 72 ~~~c~~~l~~a~~~~~~~ 89 (400)
.....+++..|..+++..
T Consensus 81 ~~~~~~ll~lA~~~~~~~ 98 (111)
T PF00651_consen 81 DENVEELLELADKLQIPE 98 (111)
T ss_dssp TTTHHHHHHHHHHTTBHH
T ss_pred HHHHHHHHHHHHHhCcHH
Confidence 888999999998887544
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.99 E-value=1.5e-09 Score=68.76 Aligned_cols=47 Identities=30% Similarity=0.630 Sum_probs=41.2
Q ss_pred ccCcceEEEECCEEEEEcCc--cCCCCCCCeEEEEECCCCcEEEecCCC
Q psy2979 332 KRYRPGIAVIDGKIYVLGGE--EGWDGYHDSIECYDVDNDSWEIMSHLP 378 (400)
Q Consensus 332 ~~~~~~~~~~~~~lyv~GG~--~~~~~~~~~v~~yd~~~~~W~~~~~~~ 378 (400)
+|..|++++++++|||+||. +......+++++||+++++|+.++.||
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 57889999999999999998 344557899999999999999998775
No 38
>smart00612 Kelch Kelch domain.
Probab=98.99 E-value=7e-10 Score=69.94 Aligned_cols=47 Identities=32% Similarity=0.555 Sum_probs=42.1
Q ss_pred EEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcc
Q psy2979 344 KIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQI 391 (400)
Q Consensus 344 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 391 (400)
+||++||. ......+++++|||.+++|+.+++||.+|..++++++++
T Consensus 1 ~iyv~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGF-DGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCC-CCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 58999998 555567899999999999999999999999999998864
No 39
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.96 E-value=1.8e-09 Score=68.45 Aligned_cols=47 Identities=26% Similarity=0.492 Sum_probs=42.8
Q ss_pred CCEEEEEcccC--CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe
Q psy2979 198 DGFVYAVGGWD--GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH 244 (400)
Q Consensus 198 ~~~iyv~GG~~--~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~ 244 (400)
+++|||+||.+ +....++++.||+.+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57999999998 567789999999999999999999999999999863
No 40
>smart00612 Kelch Kelch domain.
Probab=98.94 E-value=1.6e-09 Score=68.28 Aligned_cols=47 Identities=40% Similarity=0.744 Sum_probs=42.5
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCC
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG 246 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~ 246 (400)
+||++||..+....+++++||+.+++|+.+++||.+|..++++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998876678899999999999999999999999999988764
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.94 E-value=1.1e-09 Score=69.54 Aligned_cols=48 Identities=27% Similarity=0.632 Sum_probs=30.9
Q ss_pred ccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC
Q psy2979 332 KRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS 379 (400)
Q Consensus 332 ~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 379 (400)
+|..|+++.+ +++|||+||.+......+++|+||+++++|+++++||.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 5889999998 59999999993333578999999999999999988873
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.93 E-value=3.3e-09 Score=67.17 Aligned_cols=46 Identities=28% Similarity=0.584 Sum_probs=41.2
Q ss_pred cceeeeEEEECCEEEEEccc---CCCCCCCeEEEEeCCCCceEEccCCC
Q psy2979 188 DFDVSGIAMLDGFVYAVGGW---DGSCRLDSVERYDPTKNEWSYIEPMK 233 (400)
Q Consensus 188 ~r~~~~~~~~~~~iyv~GG~---~~~~~~~~v~~yd~~~~~W~~~~~l~ 233 (400)
||..|++++++++|||+||. ......++++.||+.+++|+.++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 58899999999999999999 44567889999999999999998875
No 43
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.88 E-value=1.6e-07 Score=80.27 Aligned_cols=148 Identities=14% Similarity=0.176 Sum_probs=99.3
Q ss_pred EEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCC----CceEEcc-CCCCcccccEEE
Q psy2979 168 IVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTK----NEWSYIE-PMKLAVTSPAVV 242 (400)
Q Consensus 168 ~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~-~l~~~~~~~~~~ 242 (400)
.-..||+.+++++.+......-+...+..-+|++.+.||... ....+..|+|.+ ..|.+.+ .|..+|.+.++.
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 346799999999887654333344344445899999999864 335677788765 6798876 589999999988
Q ss_pred Ee-CCEEEEEcCccccCCCCcceEEEEeCCC-----CceeeccC----CCCCceeeeEEEECCeEEEEcCcCCCCCCCCe
Q psy2979 243 AH-EGMLYVTGGAILEDGDGIEQVQRYNPKV-----NQWQDLAP----MLIPRSGAAICALDSCIYVLGGWHASTENTNR 312 (400)
Q Consensus 243 ~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~-----~~W~~~~~----~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 312 (400)
.+ ||+++|+||. .. ...+.+.+.. ..|..+.. .+..-+-+....-+|+||+++. ..
T Consensus 125 ~L~DG~vlIvGG~---~~---~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an--------~~ 190 (243)
T PF07250_consen 125 TLPDGRVLIVGGS---NN---PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN--------RG 190 (243)
T ss_pred ECCCCCEEEEeCc---CC---CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc--------CC
Confidence 76 8999999998 32 1233333311 11222221 1222222333444999999995 46
Q ss_pred EEEEECCCCeE-EEccCCcC
Q psy2979 313 VECYHIAENTW-EYKSPMKE 331 (400)
Q Consensus 313 v~~yd~~~~~W-~~~~~~~~ 331 (400)
...||+.++++ ..++.+|.
T Consensus 191 s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 191 SIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred cEEEeCCCCeEEeeCCCCCC
Confidence 77889999987 78888884
No 44
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.85 E-value=3.5e-09 Score=67.21 Aligned_cols=48 Identities=33% Similarity=0.598 Sum_probs=31.1
Q ss_pred CceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcC
Q psy2979 284 PRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKE 331 (400)
Q Consensus 284 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 331 (400)
||.+|+++.+ +++||++||.+......+++++||+++++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 6889999998 68999999988764338999999999999999988873
No 45
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.75 E-value=5e-07 Score=77.22 Aligned_cols=149 Identities=20% Similarity=0.340 Sum_probs=99.5
Q ss_pred eEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCC----Cceeecc-CCCCCceeee
Q psy2979 215 SVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKV----NQWQDLA-PMLIPRSGAA 289 (400)
Q Consensus 215 ~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~----~~W~~~~-~~~~~r~~~~ 289 (400)
.-..||+.+++++.+.-....-+...+..-||.+.++||.. ++ .+.+..|+|.+ ..|.+.+ .|..+|-..+
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~--~G--~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT 122 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDN--DG--NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT 122 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCC--cc--ccceEEEecCCCCCCCCceECcccccCCCcccc
Confidence 34579999999988754322222223334589999999984 33 45677888876 5698886 5899999999
Q ss_pred EEEE-CCeEEEEcCcCCCCCCCCeEEEEECCC--C---eEEEccC----CcCccCcceEEEECCEEEEEcCccCCCCCCC
Q psy2979 290 ICAL-DSCIYVLGGWHASTENTNRVECYHIAE--N---TWEYKSP----MKEKRYRPGIAVIDGKIYVLGGEEGWDGYHD 359 (400)
Q Consensus 290 ~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~--~---~W~~~~~----~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~ 359 (400)
+..+ +|+++|+||... .+.+.+.+.. . .|..+.. .+...+-+....-+|+|++++..
T Consensus 123 ~~~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------- 189 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------- 189 (243)
T ss_pred ceECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--------
Confidence 9888 889999999852 2233333321 1 2322322 12222333333449999999976
Q ss_pred eEEEEECCCCcE-EEecCCCCC
Q psy2979 360 SIECYDVDNDSW-EIMSHLPSA 380 (400)
Q Consensus 360 ~v~~yd~~~~~W-~~~~~~~~~ 380 (400)
.-.+||+.++++ +.++.+|..
T Consensus 190 ~s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 190 GSIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred CcEEEeCCCCeEEeeCCCCCCC
Confidence 346899999987 788988873
No 46
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.71 E-value=1.1e-05 Score=69.98 Aligned_cols=193 Identities=12% Similarity=0.051 Sum_probs=117.2
Q ss_pred CEEEEEECCCCCeEEccCCCCcce---e--eeEEEE---CC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCc-c
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFD---V--SGIAML---DG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLA-V 236 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~---~--~~~~~~---~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~-~ 236 (400)
..+..+||.|++|..+|+++.++. . .+.+.- +. +|..+...........+++|+..+++|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 678899999999999987654211 1 111110 11 455444322222345789999999999998743321 1
Q ss_pred cccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceee-ccCCCCCc----eeeeEEEECCeEEEEcCcCCCCCCC
Q psy2979 237 TSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQD-LAPMLIPR----SGAAICALDSCIYVLGGWHASTENT 310 (400)
Q Consensus 237 ~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~-~~~~~~~r----~~~~~~~~~~~iyv~GG~~~~~~~~ 310 (400)
.....+.++|.+|-+... .... ...+..||..+++|.. + ++|..+ ....++.++|++.++...... . .
T Consensus 94 ~~~~~v~~~G~lyw~~~~---~~~~~~~~IvsFDl~~E~f~~~i-~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~-~-~ 167 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYT---LKTNPDYFIVSFDVSSERFKEFI-PLPCGNSDSVDYLSLINYKGKLAVLKQKKDT-N-N 167 (230)
T ss_pred ccCCeEEECCEEEEEEEE---CCCCCcEEEEEEEcccceEeeee-ecCccccccccceEEEEECCEEEEEEecCCC-C-c
Confidence 222366789999988754 2211 2379999999999995 5 334332 245677889999888754321 1 2
Q ss_pred CeEEEEE-CCCCeEEEccCCc---CccC----cceEEEECCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 311 NRVECYH-IAENTWEYKSPMK---EKRY----RPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 311 ~~v~~yd-~~~~~W~~~~~~~---~~~~----~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
-++|..+ ...+.|++.-..+ .+.. .+..+.-+|+|++.... . ....+..||+++|
T Consensus 168 ~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~---~~~~~~~y~~~~~ 230 (230)
T TIGR01640 168 FDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-E---NPFYIFYYNVGEN 230 (230)
T ss_pred EEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-C---CceEEEEEeccCC
Confidence 4677774 4456798754332 1111 12344558888887653 1 1124889999875
No 47
>KOG4350|consensus
Probab=98.59 E-value=5.9e-08 Score=85.71 Aligned_cols=69 Identities=33% Similarity=0.516 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc----------ceeecCCCCHH---HHHHHhhhccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPY---FLHDCVEQCAI 68 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m----------~~vrl~~l~~~---~l~~~i~~~~l 68 (400)
..+-+.|.++--+++..||+++|++.+|||||.+|||.|.||||| ..|-|+.-..+ .|+.+||++.+
T Consensus 29 ~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~ 108 (620)
T KOG4350|consen 29 NNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKI 108 (620)
T ss_pred cchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcce
Confidence 345678899999999999999999999999999999999999998 34555544444 57778888776
Q ss_pred cc
Q psy2979 69 IK 70 (400)
Q Consensus 69 ~~ 70 (400)
..
T Consensus 109 ~l 110 (620)
T KOG4350|consen 109 DL 110 (620)
T ss_pred ec
Confidence 44
No 48
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=98.59 E-value=6.5e-08 Score=70.14 Aligned_cols=71 Identities=39% Similarity=0.536 Sum_probs=60.9
Q ss_pred ceEEEECCeEEehhhHHHhhcCcccccc----------ceeecCCCCHH---HHHHHhhhcccccCchhHHHHHHHHHhc
Q psy2979 19 DVTLCVDGSKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPY---FLHDCVEQCAIIKNNPQCAQLVEEAKLF 85 (400)
Q Consensus 19 Dv~l~~~~~~~~~hr~vLaa~s~yf~~m----------~~vrl~~l~~~---~l~~~i~~~~l~~~~~~c~~~l~~a~~~ 85 (400)
|++|.++++.|.+||.+|++.|+||+.| ..+.++..+++ .+++++|++++......+.+++..|..+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 7899999999999999999999999876 35778888887 5778899999888877888999999887
Q ss_pred CCCc
Q psy2979 86 HLLP 89 (400)
Q Consensus 86 ~~~~ 89 (400)
.+..
T Consensus 81 ~~~~ 84 (90)
T smart00225 81 QIPG 84 (90)
T ss_pred CcHH
Confidence 6543
No 49
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.56 E-value=0.00033 Score=65.99 Aligned_cols=230 Identities=12% Similarity=0.052 Sum_probs=135.3
Q ss_pred ceEEEEEcCCCc--eEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCC--cceeeeEEEEC
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKF--DFDVSGIAMLD 198 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~--~r~~~~~~~~~ 198 (400)
..+..+|..+++ |+.-. +.. ...+.++.++. +|+......++.+|+.+++ |+.-...+. .+...+-+..+
T Consensus 130 g~l~ald~~tG~~~W~~~~--~~~-~~ssP~v~~~~-v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~ 205 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKV--AGE-ALSRPVVSDGL-VLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF 205 (394)
T ss_pred CEEEEEECCCCCCcccccC--CCc-eecCCEEECCE-EEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC
Confidence 468899998875 86432 211 12233445666 8877666789999998876 876443221 12222334456
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCCc--------ccccEEEEeCCEEEEEcCccccCCCCcceEEEE
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKLA--------VTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY 268 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~--------~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 268 (400)
+.+|+..+ + ..+..+|+.++ .|+.-...|.. ....+-++.++.+|+.+.. ..++++
T Consensus 206 ~~v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~--------g~l~al 271 (394)
T PRK11138 206 GGAIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN--------GNLVAL 271 (394)
T ss_pred CEEEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC--------CeEEEE
Confidence 77777543 2 35778888876 48653222211 0112334668999986543 368999
Q ss_pred eCCCCc--eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEEccCCcCccCcceEEEECCE
Q psy2979 269 NPKVNQ--WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT--WEYKSPMKEKRYRPGIAVIDGK 344 (400)
Q Consensus 269 d~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~ 344 (400)
|+.+.+ |+.- .... ...+..++.||+... ...+.++|+.+++ |+.-. ...+...+.++.+++
T Consensus 272 d~~tG~~~W~~~--~~~~---~~~~~~~~~vy~~~~-------~g~l~ald~~tG~~~W~~~~--~~~~~~~sp~v~~g~ 337 (394)
T PRK11138 272 DLRSGQIVWKRE--YGSV---NDFAVDGGRIYLVDQ-------NDRVYALDTRGGVELWSQSD--LLHRLLTAPVLYNGY 337 (394)
T ss_pred ECCCCCEEEeec--CCCc---cCcEEECCEEEEEcC-------CCeEEEEECCCCcEEEcccc--cCCCcccCCEEECCE
Confidence 998765 8753 2211 134566899999764 4579999998764 86421 112233344567999
Q ss_pred EEEEcCccCCCCCCCeEEEEECCCCc--EEEecCCCCCCCceeeEEEcccccc
Q psy2979 345 IYVLGGEEGWDGYHDSIECYDVDNDS--WEIMSHLPSARSWLGCVPLQIHKSQ 395 (400)
Q Consensus 345 lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~~~~ 395 (400)
||+.... ..++++|+.+++ |+. .++......+-++.++++|+
T Consensus 338 l~v~~~~-------G~l~~ld~~tG~~~~~~--~~~~~~~~s~P~~~~~~l~v 381 (394)
T PRK11138 338 LVVGDSE-------GYLHWINREDGRFVAQQ--KVDSSGFLSEPVVADDKLLI 381 (394)
T ss_pred EEEEeCC-------CEEEEEECCCCCEEEEE--EcCCCcceeCCEEECCEEEE
Confidence 9886432 368899998875 544 22222234444555665443
No 50
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.56 E-value=0.00036 Score=65.78 Aligned_cols=221 Identities=16% Similarity=0.216 Sum_probs=132.1
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCc--eEEccCCc--------ccceeeeEEEECCeEEEEEeecCEEEEEECCCCC-
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKV--WKTLSCLP--------FAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI- 178 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~--w~~~~~~~--------~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~- 178 (400)
+.+++.... ..+.++|..+++ |..-..-. ......+.++.++. +|+......++.+|..+++
T Consensus 70 ~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-v~v~~~~g~l~ald~~tG~~ 142 (394)
T PRK11138 70 NKVYAADRA------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGK-VYIGSEKGQVYALNAEDGEV 142 (394)
T ss_pred CEEEEECCC------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCE-EEEEcCCCEEEEEECCCCCC
Confidence 555654332 368899988775 87422110 01122234556777 8887666789999998765
Q ss_pred -eEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--eEEccCCCC--cccccEEEEeCCEEEEEcC
Q psy2979 179 -LHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE--WSYIEPMKL--AVTSPAVVAHEGMLYVTGG 253 (400)
Q Consensus 179 -w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~l~~--~~~~~~~~~~~~~iyv~GG 253 (400)
|+.-.+ .+ ...+-++.++.+|+..+ ...+..+|+.+++ |+.-...|. .+...+-++.++.+|+..+
T Consensus 143 ~W~~~~~--~~-~~ssP~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~ 213 (394)
T PRK11138 143 AWQTKVA--GE-ALSRPVVSDGLVLVHTS------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD 213 (394)
T ss_pred cccccCC--Cc-eecCCEEECCEEEEECC------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC
Confidence 865332 11 12223445788887543 2368999998875 876543221 1122233455777777544
Q ss_pred ccccCCCCcceEEEEeCCCCc--eeeccCCCCC--------ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe-
Q psy2979 254 AILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIP--------RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT- 322 (400)
Q Consensus 254 ~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~- 322 (400)
. ..+..+|+.+.+ |+.-...+.. ....+-+..++.+|+.+. ...+.++|+.+++
T Consensus 214 ~--------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-------~g~l~ald~~tG~~ 278 (394)
T PRK11138 214 N--------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-------NGNLVALDLRSGQI 278 (394)
T ss_pred C--------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-------CCeEEEEECCCCCE
Confidence 3 368888887664 8743221111 011334456889998663 3579999998875
Q ss_pred -EEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc--EEE
Q psy2979 323 -WEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEI 373 (400)
Q Consensus 323 -W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 373 (400)
|+.-. .. ....++.+++||+.... ..++++|+++++ |+.
T Consensus 279 ~W~~~~--~~---~~~~~~~~~~vy~~~~~-------g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 279 VWKREY--GS---VNDFAVDGGRIYLVDQN-------DRVYALDTRGGVELWSQ 320 (394)
T ss_pred EEeecC--CC---ccCcEEECCEEEEEcCC-------CeEEEEECCCCcEEEcc
Confidence 87531 11 11345678999997643 468999998874 764
No 51
>PLN02772 guanylate kinase
Probab=98.49 E-value=1.2e-06 Score=79.64 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=68.6
Q ss_pred CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc---CCcCccCcceEEEE-CCEEEEEcCccCCCCCC
Q psy2979 283 IPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKS---PMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYH 358 (400)
Q Consensus 283 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~ 358 (400)
.++..++++++++++|++||.+......+.+++||+.+++|.... ..|.+|.+|+++++ +++|+|+++- .. ..
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~-~~--~~ 99 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKG-SA--PD 99 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCC-CC--Cc
Confidence 478889999999999999998776523789999999999998754 78899999999999 6899999864 22 23
Q ss_pred CeEEEEECCC
Q psy2979 359 DSIECYDVDN 368 (400)
Q Consensus 359 ~~v~~yd~~~ 368 (400)
+++|.....|
T Consensus 100 ~~~w~l~~~t 109 (398)
T PLN02772 100 DSIWFLEVDT 109 (398)
T ss_pred cceEEEEcCC
Confidence 7788877665
No 52
>PLN02772 guanylate kinase
Probab=98.48 E-value=1.2e-06 Score=79.52 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=67.2
Q ss_pred CcccccEEEEeCCEEEEEcCccccCCCC--cceEEEEeCCCCceeecc---CCCCCceeeeEEEE-CCeEEEEcCcCCCC
Q psy2979 234 LAVTSPAVVAHEGMLYVTGGAILEDGDG--IEQVQRYNPKVNQWQDLA---PMLIPRSGAAICAL-DSCIYVLGGWHAST 307 (400)
Q Consensus 234 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~-~~~iyv~GG~~~~~ 307 (400)
.++..++++.+++++||+||. +... .+.+++||+.+.+|.... +.|.+|.+|+++++ +++|+|+++.....
T Consensus 23 ~~~~~~tav~igdk~yv~GG~---~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~ 99 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGN---HEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD 99 (398)
T ss_pred CCCCcceeEEECCEEEEEccc---CCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc
Confidence 477889999999999999998 4442 789999999999999775 77899999999999 68999999765443
Q ss_pred CCCCeEEEEECCCC
Q psy2979 308 ENTNRVECYHIAEN 321 (400)
Q Consensus 308 ~~~~~v~~yd~~~~ 321 (400)
.++|.....|.
T Consensus 100 ---~~~w~l~~~t~ 110 (398)
T PLN02772 100 ---DSIWFLEVDTP 110 (398)
T ss_pred ---cceEEEEcCCH
Confidence 46777766543
No 53
>PF13854 Kelch_5: Kelch motif
Probab=98.47 E-value=4.3e-07 Score=55.17 Aligned_cols=41 Identities=24% Similarity=0.531 Sum_probs=35.1
Q ss_pred CcCccCcceEEEECCEEEEEcCccC-CCCCCCeEEEEECCCC
Q psy2979 329 MKEKRYRPGIAVIDGKIYVLGGEEG-WDGYHDSIECYDVDND 369 (400)
Q Consensus 329 ~~~~~~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~~~ 369 (400)
+|.+|..|++++++++|||+||... .....+++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4789999999999999999999931 4667899999998763
No 54
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.44 E-value=4.6e-05 Score=66.03 Aligned_cols=177 Identities=8% Similarity=0.095 Sum_probs=105.1
Q ss_pred CeEEEEeCCCCceEEccCCCCccccc----EEEEeCC-----EEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCC
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSP----AVVAHEG-----MLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLI 283 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~----~~~~~~~-----~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~ 283 (400)
..+.++||.|++|..+|+.+.++... .....+. +|..+... .+.. ...++.|+..++.|+.+.+.+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~---~~~~~~~~~~Vys~~~~~Wr~~~~~~~ 90 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDR---SGNRNQSEHQVYTLGSNSWRTIECSPP 90 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEee---cCCCCCccEEEEEeCCCCccccccCCC
Confidence 46889999999999998654321111 1112221 44444322 1111 3578999999999999874332
Q ss_pred C-ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-ccCCcCcc----CcceEEEECCEEEEEcCccCCCCC
Q psy2979 284 P-RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEY-KSPMKEKR----YRPGIAVIDGKIYVLGGEEGWDGY 357 (400)
Q Consensus 284 ~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~----~~~~~~~~~~~lyv~GG~~~~~~~ 357 (400)
. ......+.++|.+|-+........ ...+..||..+.+|.. ++ +|... .....+.++|+|.++... ... .
T Consensus 91 ~~~~~~~~v~~~G~lyw~~~~~~~~~-~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~-~~~-~ 166 (230)
T TIGR01640 91 HHPLKSRGVCINGVLYYLAYTLKTNP-DYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQK-KDT-N 166 (230)
T ss_pred CccccCCeEEECCEEEEEEEECCCCC-cEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEec-CCC-C
Confidence 1 112226677999998875432221 2379999999999995 54 34322 234577789999988754 211 1
Q ss_pred CCeEEEEE-CCCCcEEEecCCCC---CCC---ceeeEEEcccccccc
Q psy2979 358 HDSIECYD-VDNDSWEIMSHLPS---ARS---WLGCVPLQIHKSQFV 397 (400)
Q Consensus 358 ~~~v~~yd-~~~~~W~~~~~~~~---~r~---~~~~~~~~~~~~~~~ 397 (400)
.-+||+.+ -....|++.-.++. +.. .....+++++.+++.
T Consensus 167 ~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~ 213 (230)
T TIGR01640 167 NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLC 213 (230)
T ss_pred cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEE
Confidence 25788875 44567998754432 211 123455566666554
No 55
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.38 E-value=0.0021 Score=60.19 Aligned_cols=229 Identities=13% Similarity=0.058 Sum_probs=130.2
Q ss_pred ceEEEEEcCCCc--eEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCC--cceeeeEEEEC
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKF--DFDVSGIAMLD 198 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~--~r~~~~~~~~~ 198 (400)
..+..+|+.+++ |..-. +.. ...+.++.++. +|+......++.+|+.+++ |+.....+. .+...+.+..+
T Consensus 115 g~l~ald~~tG~~~W~~~~--~~~-~~~~p~v~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~ 190 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKL--SSE-VLSPPLVANGL-VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD 190 (377)
T ss_pred CEEEEEECCCCcEeeeecc--Cce-eecCCEEECCE-EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC
Confidence 478899988775 76432 211 11223344666 7776666779999998765 765433221 12223334456
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCCcc--------cccEEEEeCCEEEEEcCccccCCCCcceEEEE
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKLAV--------TSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY 268 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 268 (400)
+.+|+ |..+ ..+..+|+.++ .|+.-...+... ...+.+..++.+|+.+.. ..+++|
T Consensus 191 ~~v~~-~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~--------g~l~a~ 256 (377)
T TIGR03300 191 GGVLV-GFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ--------GRVAAL 256 (377)
T ss_pred CEEEE-ECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC--------CEEEEE
Confidence 66654 3322 35888998876 476432222111 122334568888886543 368999
Q ss_pred eCCCCc--eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCC--eEEEccCCcCccCcceEEEECCE
Q psy2979 269 NPKVNQ--WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAEN--TWEYKSPMKEKRYRPGIAVIDGK 344 (400)
Q Consensus 269 d~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~ 344 (400)
|+.+.+ |+.-. + .....+..++.||+... ...+.++|..++ .|+.-. +. .+...+.+..+++
T Consensus 257 d~~tG~~~W~~~~--~---~~~~p~~~~~~vyv~~~-------~G~l~~~d~~tG~~~W~~~~-~~-~~~~ssp~i~g~~ 322 (377)
T TIGR03300 257 DLRSGRVLWKRDA--S---SYQGPAVDDNRLYVTDA-------DGVVVALDRRSGSELWKNDE-LK-YRQLTAPAVVGGY 322 (377)
T ss_pred ECCCCcEEEeecc--C---CccCceEeCCEEEEECC-------CCeEEEEECCCCcEEEcccc-cc-CCccccCEEECCE
Confidence 987654 76531 1 12234456889998753 457999999776 486521 11 1122233446888
Q ss_pred EEEEcCccCCCCCCCeEEEEECCCCc--EEEecCCCCCCCceeeEEEccccc
Q psy2979 345 IYVLGGEEGWDGYHDSIECYDVDNDS--WEIMSHLPSARSWLGCVPLQIHKS 394 (400)
Q Consensus 345 lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~~~ 394 (400)
||+.... ..++++|+.+++ |+. +++......+-++.+++.|
T Consensus 323 l~~~~~~-------G~l~~~d~~tG~~~~~~--~~~~~~~~~sp~~~~~~l~ 365 (377)
T TIGR03300 323 LVVGDFE-------GYLHWLSREDGSFVARL--KTDGSGIASPPVVVGDGLL 365 (377)
T ss_pred EEEEeCC-------CEEEEEECCCCCEEEEE--EcCCCccccCCEEECCEEE
Confidence 8875422 468999998774 432 2233234455566666544
No 56
>PF13854 Kelch_5: Kelch motif
Probab=98.34 E-value=1.3e-06 Score=53.09 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=35.0
Q ss_pred CCCcceeeeEEEECCEEEEEcccCC--CCCCCeEEEEeCCCC
Q psy2979 185 LKFDFDVSGIAMLDGFVYAVGGWDG--SCRLDSVERYDPTKN 224 (400)
Q Consensus 185 ~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~v~~yd~~~~ 224 (400)
+|.+|..|+++.++++||++||.+. ....+++++||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4789999999999999999999984 567889999998763
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.32 E-value=0.0017 Score=56.43 Aligned_cols=210 Identities=18% Similarity=0.219 Sum_probs=125.9
Q ss_pred ceEEEEEcCCCc--eEEccCCcccc-eeee-EEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCcceeeeEEEEC
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFAI-SKHG-LVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFDFDVSGIAMLD 198 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~~-~~~~-~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~r~~~~~~~~~ 198 (400)
..+.++|+.+++ |.. .+.... .... .+..++. +|+......++++|+.+++ |+.-. +.+-.. .....+
T Consensus 3 g~l~~~d~~tG~~~W~~--~~~~~~~~~~~~~~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~-~~~~~~ 76 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSY--DLGPGIGGPVATAVPDGGR-VYVASGDGNLYALDAKTGKVLWRFDL--PGPISG-APVVDG 76 (238)
T ss_dssp SEEEEEETTTTEEEEEE--ECSSSCSSEEETEEEETTE-EEEEETTSEEEEEETTTSEEEEEEEC--SSCGGS-GEEEET
T ss_pred CEEEEEECCCCCEEEEE--ECCCCCCCccceEEEeCCE-EEEEcCCCEEEEEECCCCCEEEEeec--cccccc-eeeecc
Confidence 356788988875 775 222111 1221 3335666 8888888899999998876 65433 222111 136678
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCC--ceE-EccCCCC--cccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCC
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKN--EWS-YIEPMKL--AVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVN 273 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~-~~~~l~~--~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 273 (400)
+.+|+..+ ...+..+|..++ .|+ .....+. .......+..++.+|+.... ..+..+|+.+.
T Consensus 77 ~~v~v~~~------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~l~~~d~~tG 142 (238)
T PF13360_consen 77 GRVYVGTS------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS--------GKLVALDPKTG 142 (238)
T ss_dssp TEEEEEET------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC--------SEEEEEETTTT
T ss_pred cccccccc------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc--------CcEEEEecCCC
Confidence 89988763 137999998877 588 4433222 22334455557777776532 37999999877
Q ss_pred c--eeeccCCCCCc--------eeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEEccCCcCccCcceEEEE
Q psy2979 274 Q--WQDLAPMLIPR--------SGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT--WEYKSPMKEKRYRPGIAVI 341 (400)
Q Consensus 274 ~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~ 341 (400)
+ |+.-...+... .....+..++.+|+..+. ..+..+|..+++ |+.. ... ........
T Consensus 143 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------g~~~~~d~~tg~~~w~~~--~~~--~~~~~~~~ 211 (238)
T PF13360_consen 143 KLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD-------GRVVAVDLATGEKLWSKP--ISG--IYSLPSVD 211 (238)
T ss_dssp EEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT-------SSEEEEETTTTEEEEEEC--SS---ECECEECC
T ss_pred cEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC-------CeEEEEECCCCCEEEEec--CCC--ccCCceee
Confidence 6 77644443211 123334446788888764 235666999997 8443 111 11113444
Q ss_pred CCEEEEEcCccCCCCCCCeEEEEECCCCc--EE
Q psy2979 342 DGKIYVLGGEEGWDGYHDSIECYDVDNDS--WE 372 (400)
Q Consensus 342 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~ 372 (400)
++.||+.. . ...++++|+++++ |+
T Consensus 212 ~~~l~~~~-~------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 212 GGTLYVTS-S------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp CTEEEEEE-T------TTEEEEEETTTTEEEEE
T ss_pred CCEEEEEe-C------CCEEEEEECCCCCEEeE
Confidence 78888876 3 2579999999985 64
No 58
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.25 E-value=0.0044 Score=58.03 Aligned_cols=209 Identities=16% Similarity=0.213 Sum_probs=122.3
Q ss_pred ceEEEEEcCCCc--eEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCcceeeeEEEECCE
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFDFDVSGIAMLDGF 200 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~r~~~~~~~~~~~ 200 (400)
..+.++|+.+++ |..-. +.. ...+.++.++. +|+......++.+|+.+++ |+.... .. ...+.+..++.
T Consensus 75 g~v~a~d~~tG~~~W~~~~--~~~-~~~~p~v~~~~-v~v~~~~g~l~ald~~tG~~~W~~~~~--~~-~~~~p~v~~~~ 147 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVDL--DER-LSGGVGADGGL-VFVGTEKGEVIALDAEDGKELWRAKLS--SE-VLSPPLVANGL 147 (377)
T ss_pred CeEEEEEccCCcEeeeecC--CCC-cccceEEcCCE-EEEEcCCCEEEEEECCCCcEeeeeccC--ce-eecCCEEECCE
Confidence 368899988876 76422 211 11233444566 8877666789999997765 764322 11 12223345778
Q ss_pred EEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCC--cccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--
Q psy2979 201 VYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKL--AVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ-- 274 (400)
Q Consensus 201 iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~--~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~-- 274 (400)
+|+..+ ...+..+|+.++ .|+.-..-+. .+...+.+..++.+|+ |.. + ..+..+|+.+.+
T Consensus 148 v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~---~----g~v~ald~~tG~~~ 213 (377)
T TIGR03300 148 VVVRTN------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFA---G----GKLVALDLQTGQPL 213 (377)
T ss_pred EEEECC------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECC---C----CEEEEEEccCCCEe
Confidence 877543 245889999876 4765432221 1222334556776654 333 2 368899987654
Q ss_pred eeeccCCCCCc--------eeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEEccCCcCccCcceEEEECCE
Q psy2979 275 WQDLAPMLIPR--------SGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT--WEYKSPMKEKRYRPGIAVIDGK 344 (400)
Q Consensus 275 W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~ 344 (400)
|+.-...+... .....+..++.+|+.+. ...+.+||+++++ |..-. + .....++.+++
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-------~g~l~a~d~~tG~~~W~~~~--~---~~~~p~~~~~~ 281 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY-------QGRVAALDLRSGRVLWKRDA--S---SYQGPAVDDNR 281 (377)
T ss_pred eeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-------CCEEEEEECCCCcEEEeecc--C---CccCceEeCCE
Confidence 86432222111 12233455888888653 3579999998764 76531 1 12234456899
Q ss_pred EEEEcCccCCCCCCCeEEEEECCCC--cEEE
Q psy2979 345 IYVLGGEEGWDGYHDSIECYDVDND--SWEI 373 (400)
Q Consensus 345 lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~ 373 (400)
||+.... ..++++|+.++ .|+.
T Consensus 282 vyv~~~~-------G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 282 LYVTDAD-------GVVVALDRRSGSELWKN 305 (377)
T ss_pred EEEECCC-------CeEEEEECCCCcEEEcc
Confidence 9987542 46899999876 4765
No 59
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.15 E-value=0.00078 Score=59.01 Aligned_cols=202 Identities=18% Similarity=0.259 Sum_probs=114.1
Q ss_pred CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCC
Q psy2979 156 GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM 232 (400)
Q Consensus 156 ~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l 232 (400)
++. +|++ .....++.+|+.+++-....... ..+++.. ++.+|+... .....+|+.+++++.+...
T Consensus 11 ~g~-l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 11 DGR-LYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp TTE-EEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEEEEEE
T ss_pred CCE-EEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEEEeec
Confidence 345 7777 34678999999988765433322 2333333 678888754 3356779999999888665
Q ss_pred C-----CcccccEEEEeCCEEEEEcCccccCCCC-c--ceEEEEeCCCCceeecc-CCCCCceeeeEEEE-CC-eEEEEc
Q psy2979 233 K-----LAVTSPAVVAHEGMLYVTGGAILEDGDG-I--EQVQRYNPKVNQWQDLA-PMLIPRSGAAICAL-DS-CIYVLG 301 (400)
Q Consensus 233 ~-----~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~--~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~-~~-~iyv~G 301 (400)
+ ..+.+-.++.-+|.+|+..-.. .... . ..++++++. .+.+.+. .+..| .+++.. ++ .+|+..
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~--~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGG--GGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVAD 152 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECC--BCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCC--CccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeecc
Confidence 3 2333333444578899874331 1111 2 579999998 6655553 22222 233333 44 577765
Q ss_pred CcCCCCCCCCeEEEEECCCC--eEEE---ccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 302 GWHASTENTNRVECYHIAEN--TWEY---KSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 302 G~~~~~~~~~~v~~yd~~~~--~W~~---~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
-. ...+++|++... .+.. +..++.....+-..++ +|+||+..-. ...|++|||....-..+
T Consensus 153 s~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~------~~~I~~~~p~G~~~~~i 220 (246)
T PF08450_consen 153 SF------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG------GGRIVVFDPDGKLLREI 220 (246)
T ss_dssp TT------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET------TTEEEEEETTSCEEEEE
T ss_pred cc------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC------CCEEEEECCCccEEEEE
Confidence 43 568999998633 2332 2223322222333333 6899997321 24799999996655555
Q ss_pred cCCCCCCCceeeEEEc
Q psy2979 375 SHLPSARSWLGCVPLQ 390 (400)
Q Consensus 375 ~~~~~~r~~~~~~~~~ 390 (400)
. +|.+ ....+..+
T Consensus 221 ~-~p~~--~~t~~~fg 233 (246)
T PF08450_consen 221 E-LPVP--RPTNCAFG 233 (246)
T ss_dssp E--SSS--SEEEEEEE
T ss_pred c-CCCC--CEEEEEEE
Confidence 3 5533 44455553
No 60
>KOG2075|consensus
Probab=97.80 E-value=3.3e-05 Score=70.39 Aligned_cols=83 Identities=23% Similarity=0.298 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhcCceeceEEEECC-----eEEehhhHHHhhcCcccccc----------ceeecCCCCHH---HHHHHhh
Q psy2979 3 MVLTGFNEARKNNEFCDVTLCVDG-----SKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPY---FLHDCVE 64 (400)
Q Consensus 3 ~~l~~l~~~r~~~~~~Dv~l~~~~-----~~~~~hr~vLaa~s~yf~~m----------~~vrl~~l~~~---~l~~~i~ 64 (400)
.+.++.-.+..++..+|+...|++ +.|||||-|||..|.=|.+| ..|++|.+.+. .++.++|
T Consensus 100 t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flY 179 (521)
T KOG2075|consen 100 TMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLY 179 (521)
T ss_pred hHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHh
Confidence 467778888899999999998873 68999999999999999998 47999999998 6778999
Q ss_pred hcccccCchhHHHHHHHHHhc
Q psy2979 65 QCAIIKNNPQCAQLVEEAKLF 85 (400)
Q Consensus 65 ~~~l~~~~~~c~~~l~~a~~~ 85 (400)
+++.....++|..++..|.+|
T Consensus 180 sdev~~~~dtvi~tl~~AkKY 200 (521)
T KOG2075|consen 180 SDEVKLAADTVITTLYAAKKY 200 (521)
T ss_pred cchhhhhHHHHHHHHHHHHHh
Confidence 999988888998888888776
No 61
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.76 E-value=0.022 Score=49.37 Aligned_cols=174 Identities=16% Similarity=0.237 Sum_probs=103.0
Q ss_pred CEEEEEECCCCC--eEEccCCCCcceeee--EEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--eEEccCCCCcccccE
Q psy2979 167 DIVYVAASMHKI--LHSLGSLKFDFDVSG--IAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE--WSYIEPMKLAVTSPA 240 (400)
Q Consensus 167 ~~~~~yd~~~~~--w~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~~~~~ 240 (400)
..+..+|+.+++ |+.-. ..+..... .+..++.+|+..+ ...+.++|+.+++ |+.-. +.+....
T Consensus 3 g~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~~~~~- 71 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL--GPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGPISGA- 71 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC--SSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSCGGSG-
T ss_pred CEEEEEECCCCCEEEEEEC--CCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--cccccce-
Confidence 346677776654 65522 11122222 3346889998743 3579999998875 65543 3332222
Q ss_pred EEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--ee-eccCCCC-C-ceeeeEEEECCeEEEEcCcCCCCCCCCeEEE
Q psy2979 241 VVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQ-DLAPMLI-P-RSGAAICALDSCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~-~~~~~~~-~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 315 (400)
....++.+|+..+. +.++++|..+.+ |+ .....+. + .........++.+|+... ...+..
T Consensus 72 ~~~~~~~v~v~~~~--------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~ 136 (238)
T PF13360_consen 72 PVVDGGRVYVGTSD--------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVA 136 (238)
T ss_dssp EEEETTEEEEEETT--------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-------CSEEEE
T ss_pred eeecccccccccce--------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-------cCcEEE
Confidence 47789999988643 379999976665 98 4433222 2 233334444677766653 458999
Q ss_pred EECCCCe--EEEccCCcCccC--------cceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc--EEE
Q psy2979 316 YHIAENT--WEYKSPMKEKRY--------RPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEI 373 (400)
Q Consensus 316 yd~~~~~--W~~~~~~~~~~~--------~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 373 (400)
+|+.+++ |+.-...+.... ....+..++.+|+..+. . .+..+|..+++ |+.
T Consensus 137 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g------~~~~~d~~tg~~~w~~ 199 (238)
T PF13360_consen 137 LDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD-G------RVVAVDLATGEKLWSK 199 (238)
T ss_dssp EETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT-S------SEEEEETTTTEEEEEE
T ss_pred EecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC-C------eEEEEECCCCCEEEEe
Confidence 9999885 776444432211 12233336899998865 2 25666999987 844
No 62
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.71 E-value=0.0019 Score=59.23 Aligned_cols=122 Identities=14% Similarity=0.216 Sum_probs=85.0
Q ss_pred eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCC----CeEEEE--E
Q psy2979 244 HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENT----NRVECY--H 317 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~----~~v~~y--d 317 (400)
.+++|+.++.. .....||+.+..-...|.++.+.....++.++++||++.......... ..++.+ +
T Consensus 75 ~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 75 HGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred cCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccc
Confidence 58899988665 248999999999998888888777778888899999998764432200 144444 4
Q ss_pred C--------CCCeEEEccCCcCccC-------cceEEEE-CCEEEE-EcCccCCCCCCCeEEEEECCCCcEEEecC--CC
Q psy2979 318 I--------AENTWEYKSPMKEKRY-------RPGIAVI-DGKIYV-LGGEEGWDGYHDSIECYDVDNDSWEIMSH--LP 378 (400)
Q Consensus 318 ~--------~~~~W~~~~~~~~~~~-------~~~~~~~-~~~lyv-~GG~~~~~~~~~~v~~yd~~~~~W~~~~~--~~ 378 (400)
+ ..-.|+.+++.|.... -.+-+++ +..|+| +-|. . ...+.||.++.+|+.+++ ||
T Consensus 147 ~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~-~-----~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 147 PPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGR-R-----WGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred cccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCC-c-----eEEEEEEcCCcceeeccceecC
Confidence 2 2236889888775443 2334455 667888 4332 1 347999999999999975 55
Q ss_pred C
Q psy2979 379 S 379 (400)
Q Consensus 379 ~ 379 (400)
.
T Consensus 221 F 221 (342)
T PF07893_consen 221 F 221 (342)
T ss_pred c
Confidence 4
No 63
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.69 E-value=0.0027 Score=58.22 Aligned_cols=121 Identities=12% Similarity=0.155 Sum_probs=83.0
Q ss_pred EEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCC-----eEEEE--eC---
Q psy2979 152 LVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLD-----SVERY--DP--- 221 (400)
Q Consensus 152 ~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~-----~v~~y--d~--- 221 (400)
+++.+++ |+.+.....+..||..+..-...|.|..+.....++.++++||++.......... .+|.+ ++
T Consensus 72 ~al~gsk-Iv~~d~~~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~ 150 (342)
T PF07893_consen 72 FALHGSK-IVAVDQSGRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPD 150 (342)
T ss_pred EEecCCe-EEEEcCCCCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccc
Confidence 3445777 8888666779999999999988888887777777777899999998764322111 44444 42
Q ss_pred -----CCCceEEccCCCCcccc-------cEEEEe-CCEEEE-EcCccccCCCCcceEEEEeCCCCceeeccC
Q psy2979 222 -----TKNEWSYIEPMKLAVTS-------PAVVAH-EGMLYV-TGGAILEDGDGIEQVQRYNPKVNQWQDLAP 280 (400)
Q Consensus 222 -----~~~~W~~~~~l~~~~~~-------~~~~~~-~~~iyv-~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~ 280 (400)
..=.|+.+|+.|..... .+-+++ +..|+| +.|. ....+.||..+.+|+++.+
T Consensus 151 ~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~-------~~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 151 DPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGR-------RWGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCC-------ceEEEEEEcCCcceeeccc
Confidence 12268888876643332 233455 778888 3332 1258999999999999984
No 64
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.64 E-value=0.0066 Score=52.13 Aligned_cols=164 Identities=14% Similarity=0.122 Sum_probs=92.3
Q ss_pred ccCCCCcceeeeEEEE--CC--EEEEEcccCCC--------------CCCCeEEEEeCCCCceEE--ccCCCCcccccEE
Q psy2979 182 LGSLKFDFDVSGIAML--DG--FVYAVGGWDGS--------------CRLDSVERYDPTKNEWSY--IEPMKLAVTSPAV 241 (400)
Q Consensus 182 ~~~~~~~r~~~~~~~~--~~--~iyv~GG~~~~--------------~~~~~v~~yd~~~~~W~~--~~~l~~~~~~~~~ 241 (400)
...+|.+|++|++.++ .| ...++||..-. .....|+..|+.-+..+. +|.+....+.|.+
T Consensus 81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvs 160 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVS 160 (337)
T ss_pred cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEE
Confidence 4678999999998887 22 46788997521 234567788888876643 5778888999999
Q ss_pred EEeCCEEEEEcCccccCCCCcceEEEEeCC---CCceeeccCCCCCceeeeEEE--E-CCeEEEEcCcCCCCCC---C--
Q psy2979 242 VAHEGMLYVTGGAILEDGDGIEQVQRYNPK---VNQWQDLAPMLIPRSGAAICA--L-DSCIYVLGGWHASTEN---T-- 310 (400)
Q Consensus 242 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~---~~~W~~~~~~~~~r~~~~~~~--~-~~~iyv~GG~~~~~~~---~-- 310 (400)
..-++.+|++||...........+++.... ..-+-...-++...+..++.+ . .+...|+||+...... .
T Consensus 161 lar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~ 240 (337)
T PF03089_consen 161 LARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNT 240 (337)
T ss_pred EecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccceeeeeeeE
Confidence 999999999999854222113334443211 111111112233333222222 2 4577888997544321 0
Q ss_pred -----CeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEE
Q psy2979 311 -----NRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYV 347 (400)
Q Consensus 311 -----~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv 347 (400)
+.+..-..+.-.|+ ++....|.+++...-+|.+++
T Consensus 241 V~Ldd~~I~ie~~E~P~Wt--~dI~hSrtWFGgs~G~G~~Li 280 (337)
T PF03089_consen 241 VSLDDDGIHIEEREPPEWT--GDIKHSRTWFGGSMGKGSALI 280 (337)
T ss_pred EEEeCCceEeccCCCCCCC--CCcCcCccccccccCCceEEE
Confidence 11111112222343 133455667776666666544
No 65
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.56 E-value=0.0018 Score=55.85 Aligned_cols=160 Identities=17% Similarity=0.193 Sum_probs=104.9
Q ss_pred eeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEE
Q psy2979 190 DVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY 268 (400)
Q Consensus 190 ~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 268 (400)
.-.++.. -++.+|..-|..+. +.+.+||+.+++-....++|....+-+++.++++||.+-=. ......|
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk-------~~~~f~y 115 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK-------EGTGFVY 115 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS-------SSEEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec-------CCeEEEE
Confidence 3345555 57899998887653 67889999999887778899888888999999999998544 3478999
Q ss_pred eCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCc------ceEEEEC
Q psy2979 269 NPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYR------PGIAVID 342 (400)
Q Consensus 269 d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~------~~~~~~~ 342 (400)
|+.+ .+.+...+.+..+.+++.-+..+++..| ++.++..||.+-+=. ....+...+ --+-.++
T Consensus 116 d~~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~--~~i~V~~~g~pv~~LNELE~i~ 184 (264)
T PF05096_consen 116 DPNT--LKKIGTFPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEV--RTIQVTDNGRPVSNLNELEYIN 184 (264)
T ss_dssp ETTT--TEEEEEEE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEE--EEEE-EETTEE---EEEEEEET
T ss_pred cccc--ceEEEEEecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceE--EEEEEEECCEECCCcEeEEEEc
Confidence 9865 5666666666788899988889999988 678999999865322 111111111 1133346
Q ss_pred CEEEEEcCccCCCCCCCeEEEEECCCCc---EEEecC
Q psy2979 343 GKIYVLGGEEGWDGYHDSIECYDVDNDS---WEIMSH 376 (400)
Q Consensus 343 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~---W~~~~~ 376 (400)
|+||.=-= ..+.|.+.||+++. |-.+..
T Consensus 185 G~IyANVW------~td~I~~Idp~tG~V~~~iDls~ 215 (264)
T PF05096_consen 185 GKIYANVW------QTDRIVRIDPETGKVVGWIDLSG 215 (264)
T ss_dssp TEEEEEET------TSSEEEEEETTT-BEEEEEE-HH
T ss_pred CEEEEEeC------CCCeEEEEeCCCCeEEEEEEhhH
Confidence 77665332 35789999999985 555543
No 66
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.52 E-value=0.0098 Score=51.10 Aligned_cols=150 Identities=13% Similarity=0.090 Sum_probs=85.3
Q ss_pred EEEEcCccccCCCC-cceEEEEeCC--C-Cc-----e---eeccCCCCCceeeeEEEE----CCeEEEEcCcCCC---CC
Q psy2979 248 LYVTGGAILEDGDG-IEQVQRYNPK--V-NQ-----W---QDLAPMLIPRSGAAICAL----DSCIYVLGGWHAS---TE 308 (400)
Q Consensus 248 iyv~GG~~~~~~~~-~~~v~~yd~~--~-~~-----W---~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~---~~ 308 (400)
-.|-||.+ .... +.+++..... . |+ . .-+.+.|.+|++|++-++ +....++||..-. ..
T Consensus 41 YlIHGGrT--PNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qR 118 (337)
T PF03089_consen 41 YLIHGGRT--PNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQR 118 (337)
T ss_pred EEecCCcC--CCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCcccc
Confidence 34557774 2222 5566655332 2 22 1 223588999999998777 3367888985321 11
Q ss_pred C----------CCeEEEEECCCCeEEE--ccCCcCccCcceEEEECCEEEEEcCccCC-CCCCCeEEEEECC---CCcEE
Q psy2979 309 N----------TNRVECYHIAENTWEY--KSPMKEKRYRPGIAVIDGKIYVLGGEEGW-DGYHDSIECYDVD---NDSWE 372 (400)
Q Consensus 309 ~----------~~~v~~yd~~~~~W~~--~~~~~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~---~~~W~ 372 (400)
+ ...|+.+|++-+.++. ++.+..+...|.+.+-++.+|++||..-. +.....+++...+ ..-+-
T Consensus 119 TTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~v 198 (337)
T PF03089_consen 119 TTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAV 198 (337)
T ss_pred chhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCcee
Confidence 0 3467788887776654 55666777888888889999999998211 1222344443221 11122
Q ss_pred EecCCCCCCCc--eeeEEEcccccccccC
Q psy2979 373 IMSHLPSARSW--LGCVPLQIHKSQFVDK 399 (400)
Q Consensus 373 ~~~~~~~~r~~--~~~~~~~~~~~~~~~~ 399 (400)
....++.+..- +-++-++...++++||
T Consensus 199 sC~vl~~glSisSAIvt~~~~~e~iIlGG 227 (337)
T PF03089_consen 199 SCTVLQGGLSISSAIVTQTGPHEYIILGG 227 (337)
T ss_pred EEEECCCCceEeeeeEeecCCCceEEEec
Confidence 22223443332 2334446667777776
No 67
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.51 E-value=0.051 Score=46.77 Aligned_cols=235 Identities=14% Similarity=0.125 Sum_probs=136.1
Q ss_pred cceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCC-CCcceeeeEEEE--CC
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSL-KFDFDVSGIAML--DG 199 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~-~~~r~~~~~~~~--~~ 199 (400)
...+-..||.+++-.+.+ ++..-.-|++++- ++. .++.+....+.++|+++...++.+-. ..+-.+.-..++ .+
T Consensus 82 ~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~-~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G 159 (353)
T COG4257 82 TGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGS-AWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWG 159 (353)
T ss_pred cccceecCCCCCceEEEe-cCCCCCCceEEECCCCC-eeEecCcceeEEecCcccceEEeecccccCCCcccceeeCCCc
Confidence 345667889998876644 4555555666665 445 78876666899999988877765532 223333444445 45
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc-EEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeec
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP-AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL 278 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~ 278 (400)
.++..|-.... -+.||.++.-+..+. |..-.-+ -++.-+|.+|+..=. -+.+-+.||.+..=+.+
T Consensus 160 ~lWFt~q~G~y------GrLdPa~~~i~vfpa-PqG~gpyGi~atpdGsvwyasla-------gnaiaridp~~~~aev~ 225 (353)
T COG4257 160 NLWFTGQIGAY------GRLDPARNVISVFPA-PQGGGPYGICATPDGSVWYASLA-------GNAIARIDPFAGHAEVV 225 (353)
T ss_pred cEEEeeccccc------eecCcccCceeeecc-CCCCCCcceEECCCCcEEEEecc-------ccceEEcccccCCccee
Confidence 77776542211 156777665444332 2222223 344568888887322 13578888887755555
Q ss_pred cCCCCC-ceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCcc-CcceEEEE-CCEEEEEcCccC
Q psy2979 279 APMLIP-RSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR-YRPGIAVI-DGKIYVLGGEEG 353 (400)
Q Consensus 279 ~~~~~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~-~~~~~~~~-~~~lyv~GG~~~ 353 (400)
+. |.+ .....-+- --+++++.-=. ...+.+|||.+.+|.+-+ +|... ...++-+- .|++++---
T Consensus 226 p~-P~~~~~gsRriwsdpig~~wittwg------~g~l~rfdPs~~sW~eyp-LPgs~arpys~rVD~~grVW~sea--- 294 (353)
T COG4257 226 PQ-PNALKAGSRRIWSDPIGRAWITTWG------TGSLHRFDPSVTSWIEYP-LPGSKARPYSMRVDRHGRVWLSEA--- 294 (353)
T ss_pred cC-CCcccccccccccCccCcEEEeccC------CceeeEeCcccccceeee-CCCCCCCcceeeeccCCcEEeecc---
Confidence 43 322 22111111 24566665211 568999999999999864 33222 22222222 466666321
Q ss_pred CCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcc
Q psy2979 354 WDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQI 391 (400)
Q Consensus 354 ~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 391 (400)
..+.+.+|||++.+.+.+ |.+|-..+...+++
T Consensus 295 ---~agai~rfdpeta~ftv~---p~pr~n~gn~ql~g 326 (353)
T COG4257 295 ---DAGAIGRFDPETARFTVL---PIPRPNSGNIQLDG 326 (353)
T ss_pred ---ccCceeecCcccceEEEe---cCCCCCCCceeccC
Confidence 245789999999988875 55555555555543
No 68
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.42 E-value=0.085 Score=47.16 Aligned_cols=249 Identities=13% Similarity=0.066 Sum_probs=114.2
Q ss_pred EEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEE-ccCCCCc
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHS-LGSLKFD 188 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~-~~~~~~~ 188 (400)
+++.++.+ ..+..+|+.+++-...-.... . ..+++.. ++..+|+. ...+.+..||..+++... ++....+
T Consensus 3 ~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~-~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 75 (300)
T TIGR03866 3 AYVSNEKD-----NTISVIDTATLEVTRTFPVGQ-R-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP 75 (300)
T ss_pred EEEEecCC-----CEEEEEECCCCceEEEEECCC-C-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc
Confidence 45555443 478888887765432211111 1 1223332 33325555 345678899988876543 2221122
Q ss_pred ceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceE
Q psy2979 189 FDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 189 r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v 265 (400)
+ .++.. ++.+|+.++.+ ..+..||+.+.+- +..++......+++ .-++.+++++.. ++ +.+
T Consensus 76 ~---~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~---~~---~~~ 139 (300)
T TIGR03866 76 E---LFALHPNGKILYIANEDD-----NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSE---TT---NMA 139 (300)
T ss_pred c---EEEECCCCCEEEEEcCCC-----CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEec---CC---CeE
Confidence 1 12222 34577665432 3688899887642 22222111112232 236666666554 22 245
Q ss_pred EEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-cc----CCcCccCcceEEE
Q psy2979 266 QRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEY-KS----PMKEKRYRPGIAV 340 (400)
Q Consensus 266 ~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~----~~~~~~~~~~~~~ 340 (400)
..||..+..-........ +..+....-+++.+++++.. ...+..||..+.+... +. ..+........+.
T Consensus 140 ~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~-----~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 213 (300)
T TIGR03866 140 HFIDTKTYEIVDNVLVDQ-RPRFAEFTADGKELWVSSEI-----GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIK 213 (300)
T ss_pred EEEeCCCCeEEEEEEcCC-CccEEEECCCCCEEEEEcCC-----CCEEEEEEcCcceeeeeeeecccccccccCCccceE
Confidence 667876554322111111 11122223355544444321 3578899998765422 11 1111111111222
Q ss_pred E--CC-EEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcccccccc
Q psy2979 341 I--DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 341 ~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
+ ++ .+|+..+. .+.+.+||..+ |+.+..........+++...+..++++
T Consensus 214 ~s~dg~~~~~~~~~------~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 214 LTKDGKTAFVALGP------ANRVAVVDAKT--YEVLDYLLVGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred ECCCCCEEEEEcCC------CCeEEEEECCC--CcEEEEEEeCCCcceEEECCCCCEEEE
Confidence 2 34 45665443 24688999865 344333222333334444444444443
No 69
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.35 E-value=0.089 Score=45.96 Aligned_cols=198 Identities=15% Similarity=0.184 Sum_probs=109.0
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEEeecCEEEEEECCCCCeEEccCCC-----CcceeeeEEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCLDIVDIVYVAASMHKILHSLGSLK-----FDFDVSGIAML 197 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~-----~~r~~~~~~~~ 197 (400)
..++.+++.+++-..+. ++. ..+++.. ++. +|+... .....+|+.+++++.+...+ ..+.+-.++.-
T Consensus 22 ~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~-l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~ 95 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGR-LYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP 95 (246)
T ss_dssp TEEEEEETTTTEEEEEE-SSS---EEEEEEECTTSE-EEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T
T ss_pred CEEEEEECCCCeEEEEe-cCC---CceEEEEccCCE-EEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC
Confidence 57889999887655432 222 3344554 455 777643 44566699999998877653 22333344444
Q ss_pred CCEEEEEcccCC-CCCC--CeEEEEeCCCCceEEcc-CCCCcccccEEEE-e-CCEEEEEcCccccCCCCcceEEEEeCC
Q psy2979 198 DGFVYAVGGWDG-SCRL--DSVERYDPTKNEWSYIE-PMKLAVTSPAVVA-H-EGMLYVTGGAILEDGDGIEQVQRYNPK 271 (400)
Q Consensus 198 ~~~iyv~GG~~~-~~~~--~~v~~yd~~~~~W~~~~-~l~~~~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~v~~yd~~ 271 (400)
++.+|+..-... .... ..++++++. ++.+.+. .+..+ .+.+. - ++.+|+.-.. ...+++|+..
T Consensus 96 ~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds~-------~~~i~~~~~~ 164 (246)
T PF08450_consen 96 DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVADSF-------NGRIWRFDLD 164 (246)
T ss_dssp TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEEETT-------TTEEEEEEEE
T ss_pred CCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeecccc-------cceeEEEecc
Confidence 788888532211 1111 569999999 6655543 22211 23333 2 3468886544 3579999886
Q ss_pred CCc--eee---ccCCCCCc-eeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE---
Q psy2979 272 VNQ--WQD---LAPMLIPR-SGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--- 341 (400)
Q Consensus 272 ~~~--W~~---~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--- 341 (400)
... +.. +..++... .--++++- +|.||+..-. ...|.+|||....-..+. +|.. ..+.+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~------~~~I~~~~p~G~~~~~i~-~p~~--~~t~~~fgg~ 235 (246)
T PF08450_consen 165 ADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG------GGRIVVFDPDGKLLREIE-LPVP--RPTNCAFGGP 235 (246)
T ss_dssp TTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET------TTEEEEEETTSCEEEEEE--SSS--SEEEEEEEST
T ss_pred ccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC------CCEEEEECCCccEEEEEc-CCCC--CEEEEEEECC
Confidence 433 332 22333322 12233333 7899998422 468999999955554443 4432 4555555
Q ss_pred -CCEEEEE
Q psy2979 342 -DGKIYVL 348 (400)
Q Consensus 342 -~~~lyv~ 348 (400)
.+.|||.
T Consensus 236 ~~~~L~vT 243 (246)
T PF08450_consen 236 DGKTLYVT 243 (246)
T ss_dssp TSSEEEEE
T ss_pred CCCEEEEE
Confidence 2567775
No 70
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.34 E-value=0.0044 Score=54.72 Aligned_cols=109 Identities=14% Similarity=0.214 Sum_probs=70.0
Q ss_pred cceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCC-----cCccCc
Q psy2979 262 IEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPM-----KEKRYR 335 (400)
Q Consensus 262 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-----~~~~~~ 335 (400)
...+..||+.+.+|..+..-... .-..+.-. ++++|+.|-..-.......+..||..+++|+.++.- |.+...
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 67899999999999998654222 22333333 678887775544431267899999999999988762 333221
Q ss_pred ceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecC
Q psy2979 336 PGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 336 ~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 376 (400)
.....- ..++++.|.. ......+..|| ..+|..+..
T Consensus 94 ~~~~~~d~~~~~~aG~~---~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRS---ANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEeeccCCceEEEecee---cCCCceEEEEc--CCceEeccc
Confidence 112212 3467777764 22345677786 678999865
No 71
>KOG4591|consensus
Probab=97.24 E-value=0.00043 Score=55.74 Aligned_cols=86 Identities=23% Similarity=0.254 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHhcCceeceEEEEC---CeEEehhhHHHhhcCcccccc-------ceeecCCCCHH---HHHHHhhhccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVD---GSKFPAHRVVLAASSPYFKVL-------ETIRLPQLSPY---FLHDCVEQCAI 68 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~---~~~~~~hr~vLaa~s~yf~~m-------~~vrl~~l~~~---~l~~~i~~~~l 68 (400)
+.+|.--.++.+.+.|.|+++.+. ++.+|+||-||||.|++...- +..-+...+++ ..+..|||+++
T Consensus 51 SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~WkfaN~~dekse~~~~dDad~Ea~~t~iRWIYTDEi 130 (280)
T KOG4591|consen 51 SRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFANGGDEKSEELDLDDADFEAFHTAIRWIYTDEI 130 (280)
T ss_pred HHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhhccCCCcchhhhcccccCHHHHHHhheeeecccc
Confidence 356677788999999999999997 688999999999999976432 23345556665 45567888877
Q ss_pred ccCc--hhHHHHHHHHHhcCC
Q psy2979 69 IKNN--PQCAQLVEEAKLFHL 87 (400)
Q Consensus 69 ~~~~--~~c~~~l~~a~~~~~ 87 (400)
-... ....++.+.|.+||+
T Consensus 131 dfk~dD~~L~el~e~An~FqL 151 (280)
T KOG4591|consen 131 DFKEDDEFLLELCELANRFQL 151 (280)
T ss_pred ccccchHHHHHHHHHHHHHHH
Confidence 4433 333456666666653
No 72
>smart00284 OLF Olfactomedin-like domains.
Probab=97.03 E-value=0.17 Score=43.85 Aligned_cols=185 Identities=13% Similarity=0.045 Sum_probs=105.8
Q ss_pred CCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEe----CCCCceEEccCCCCcccccEEEEeCCEEEE
Q psy2979 175 MHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYD----PTKNEWSYIEPMKLAVTSPAVVAHEGMLYV 250 (400)
Q Consensus 175 ~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd----~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv 250 (400)
.-+.|.+-+..+.+. ++++|++.+.. ...+.+..|. ...+++...-.||.+-.+.+.++.+|.+|.
T Consensus 19 ~~GaWmkD~~~~~~~--------~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY 88 (255)
T smart00284 19 KSGAWMKDPLWNTTK--------KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYF 88 (255)
T ss_pred ccceeecCCCCCCCC--------CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEE
Confidence 346676655443322 36888886643 1124455553 334444444457877888889999999998
Q ss_pred EcCccccCCCCcceEEEEeCCCCceeeccCCCCCc----e--------eeeEEEECCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 251 TGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPR----S--------GAAICALDSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 251 ~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r----~--------~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
--.. +..+.+||..+.+-.....+|.+. . ..-.++-++-|+++=....... .-.+.+.||
T Consensus 89 ~~~~-------s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g-~ivvSkLnp 160 (255)
T smart00284 89 NKFN-------SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG-KIVISKLNP 160 (255)
T ss_pred EecC-------CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC-CEEEEeeCc
Confidence 6554 468999999999876554454321 1 1233444566666633322222 335567888
Q ss_pred CCCeEEEccCCcCcc-CcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCC
Q psy2979 319 AENTWEYKSPMKEKR-YRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSA 380 (400)
Q Consensus 319 ~~~~W~~~~~~~~~~-~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 380 (400)
.+-.-++.=..+.++ ....+.++-|.||++-.. ......-.+.||..+++=. ...+|.+
T Consensus 161 ~tL~ve~tW~T~~~k~sa~naFmvCGvLY~~~s~--~~~~~~I~yayDt~t~~~~-~~~i~f~ 220 (255)
T smart00284 161 ATLTIENTWITTYNKRSASNAFMICGILYVTRSL--GSKGEKVFYAYDTNTGKEG-HLDIPFE 220 (255)
T ss_pred ccceEEEEEEcCCCcccccccEEEeeEEEEEccC--CCCCcEEEEEEECCCCccc-eeeeeec
Confidence 655422211223333 333466778999999632 1122344678999987633 3444443
No 73
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=96.93 E-value=0.14 Score=42.87 Aligned_cols=145 Identities=16% Similarity=0.132 Sum_probs=79.0
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--eEEc----cCCCCcccccEEEEe-CCEEEEEcCccccCCCCcceE
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE--WSYI----EPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~----~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v 265 (400)
++...++.+|++-| ..+++++..... -..+ +.+|.. -..+.... ++++|++-|. ..
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~~-IDAa~~~~~~~~~yfFkg~---------~y 73 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPSP-VDAAFERPDTGKIYFFKGD---------KY 73 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCCC-ccEEEEECCCCEEEEECCC---------EE
Confidence 34445689999977 457777764211 1111 223321 22222222 3899999876 68
Q ss_pred EEEeCCCCceee---cc--CCCC-CceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEc-----cC-Cc-
Q psy2979 266 QRYNPKVNQWQD---LA--PMLI-PRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYK-----SP-MK- 330 (400)
Q Consensus 266 ~~yd~~~~~W~~---~~--~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-----~~-~~- 330 (400)
|+||..+..+.. +. .++. +..--++... ++++|++.|. ..++||..+++...- .. .+
T Consensus 74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------~y~ry~~~~~~v~~~yP~~i~~~w~g 145 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD--------KYWRYDEKTQKMDPGYPKLIETDFPG 145 (194)
T ss_pred EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC--------EEEEEeCCCccccCCCCcchhhcCCC
Confidence 999876422211 11 1111 1111223333 6899999874 789998766553211 10 11
Q ss_pred CccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 331 EKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 331 ~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+...-++... ++++|++-|. ..++||..+.+
T Consensus 146 ~p~~idaa~~~~~~~~yfF~g~--------~y~~~d~~~~~ 178 (194)
T cd00094 146 VPDKVDAAFRWLDGYYYFFKGD--------QYWRFDPRSKE 178 (194)
T ss_pred cCCCcceeEEeCCCcEEEEECC--------EEEEEeCccce
Confidence 11112223333 4899999886 78999998775
No 74
>PRK13684 Ycf48-like protein; Provisional
Probab=96.91 E-value=0.33 Score=44.55 Aligned_cols=233 Identities=14% Similarity=0.144 Sum_probs=118.8
Q ss_pred CceEEcc-CCccc-ceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCC-CCcceeeeEEEE-CCEEEEEcccCCC
Q psy2979 135 KVWKTLS-CLPFA-ISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSL-KFDFDVSGIAML-DGFVYAVGGWDGS 210 (400)
Q Consensus 135 ~~w~~~~-~~~~~-~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~-~~~r~~~~~~~~-~~~iyv~GG~~~~ 210 (400)
..|.+.. .+|.. ....++...++. .|++.....++.=+-.-.+|+.+... ..+...+.+..+ ++.+|+.|..
T Consensus 76 ~tW~~~~~~~~~~~~~l~~v~~~~~~-~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~--- 151 (334)
T PRK13684 76 ETWEERSLDLPEENFRLISISFKGDE-GWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV--- 151 (334)
T ss_pred CCceECccCCcccccceeeeEEcCCc-EEEeCCCceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc---
Confidence 4688764 23222 122334444555 66654334444443345689988632 122222333333 3445655432
Q ss_pred CCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEE-eCCCCceeeccCCCCCceeee
Q psy2979 211 CRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY-NPKVNQWQDLAPMLIPRSGAA 289 (400)
Q Consensus 211 ~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y-d~~~~~W~~~~~~~~~r~~~~ 289 (400)
..+++=+-.-++|+.+..-.. -.-+.+....+..|++.|. .+ .++.- |....+|+.+.. +..+...+
T Consensus 152 ---G~i~~S~DgG~tW~~~~~~~~-g~~~~i~~~~~g~~v~~g~---~G----~i~~s~~~gg~tW~~~~~-~~~~~l~~ 219 (334)
T PRK13684 152 ---GAIYRTTDGGKNWEALVEDAA-GVVRNLRRSPDGKYVAVSS---RG----NFYSTWEPGQTAWTPHQR-NSSRRLQS 219 (334)
T ss_pred ---ceEEEECCCCCCceeCcCCCc-ceEEEEEECCCCeEEEEeC---Cc----eEEEEcCCCCCeEEEeeC-CCccccee
Confidence 235554555679998754332 2233444444444444443 22 34443 455568998853 44444455
Q ss_pred EEEE-CCeEEEEcCcCCCCCCCCeEEEEE-C-CCCeEEEccCCcCc--cC-cceEEEE-CCEEEEEcCccCCCCCCCeEE
Q psy2979 290 ICAL-DSCIYVLGGWHASTENTNRVECYH-I-AENTWEYKSPMKEK--RY-RPGIAVI-DGKIYVLGGEEGWDGYHDSIE 362 (400)
Q Consensus 290 ~~~~-~~~iyv~GG~~~~~~~~~~v~~yd-~-~~~~W~~~~~~~~~--~~-~~~~~~~-~~~lyv~GG~~~~~~~~~~v~ 362 (400)
++.. ++.++++|.. -...+. . .-..|+.+.. |.. .. .+++... ++.++++|.. ..++
T Consensus 220 i~~~~~g~~~~vg~~--------G~~~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~~~~~~~~~G~~-------G~v~ 283 (334)
T PRK13684 220 MGFQPDGNLWMLARG--------GQIRFNDPDDLESWSKPII-PEITNGYGYLDLAYRTPGEIWAGGGN-------GTLL 283 (334)
T ss_pred eeEcCCCCEEEEecC--------CEEEEccCCCCCccccccC-CccccccceeeEEEcCCCCEEEEcCC-------CeEE
Confidence 5444 6788888742 223342 2 3347987542 211 11 2223222 6788888764 2344
Q ss_pred EEECCCCcEEEecC-CCCCCCceeeEEEcccccccccC
Q psy2979 363 CYDVDNDSWEIMSH-LPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 363 ~yd~~~~~W~~~~~-~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
.-.....+|+.++. -..+.....++..++...+.+|.
T Consensus 284 ~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 284 VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 43444568999753 22334566777777766666654
No 75
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.90 E-value=0.11 Score=45.19 Aligned_cols=165 Identities=13% Similarity=0.142 Sum_probs=101.7
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeC-----CCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCC
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDP-----TKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKV 272 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~-----~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 272 (400)
.+++|++.|..+. .+..|.. ..++....-.||.+-.+.+.++.||.+|---.. ++.+.+||..+
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~~-------s~~IvkydL~t 98 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKYN-------SRNIVKYDLTT 98 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEecC-------CceEEEEECcC
Confidence 4689999887654 4555532 333444444577777788888999999876544 57899999998
Q ss_pred CceeeccCCCCCce------------eeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCC----eEEEccCCcCccCcc
Q psy2979 273 NQWQDLAPMLIPRS------------GAAICALDSCIYVLGGWHASTENTNRVECYHIAEN----TWEYKSPMKEKRYRP 336 (400)
Q Consensus 273 ~~W~~~~~~~~~r~------------~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~~~~~ 336 (400)
..-..-..+|.+.. ..-.++-++.|+++-....... .-.+-+.||.+- .|.. ..+. +...
T Consensus 99 ~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-~ivvskld~~tL~v~~tw~T--~~~k-~~~~ 174 (250)
T PF02191_consen 99 RSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-NIVVSKLDPETLSVEQTWNT--SYPK-RSAG 174 (250)
T ss_pred CcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-cEEEEeeCcccCceEEEEEe--ccCc-hhhc
Confidence 87553333332221 2334455677787765544433 346777788654 4653 2332 2333
Q ss_pred eEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCC
Q psy2979 337 GIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSA 380 (400)
Q Consensus 337 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 380 (400)
.+.++.|.||++... .... ..-.+.||..+++=+. ..++.+
T Consensus 175 naFmvCGvLY~~~s~-~~~~-~~I~yafDt~t~~~~~-~~i~f~ 215 (250)
T PF02191_consen 175 NAFMVCGVLYATDSY-DTRD-TEIFYAFDTYTGKEED-VSIPFP 215 (250)
T ss_pred ceeeEeeEEEEEEEC-CCCC-cEEEEEEECCCCceec-eeeeec
Confidence 466778999999876 3222 3455789999887554 334443
No 76
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.87 E-value=0.35 Score=44.27 Aligned_cols=248 Identities=12% Similarity=0.094 Sum_probs=112.3
Q ss_pred ceEEEEEcCC-CceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECC-CCCeEEccCCCCcceeeeEEEE-CC
Q psy2979 125 RSVEGFCVKT-KVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASM-HKILHSLGSLKFDFDVSGIAML-DG 199 (400)
Q Consensus 125 ~~~~~yd~~~-~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~-~~~w~~~~~~~~~r~~~~~~~~-~~ 199 (400)
..+..||..+ +++..+..++.....+.++.. +++.+|+. .....+..|+.. .+++......+.+..-..++.. ++
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g 91 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQG 91 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCC
Confidence 4567777653 466655444433223334333 33337776 334667667765 4556554433322121222222 34
Q ss_pred -EEEEEcccCCCCCCCeEEEEeCCCCc--eEEccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 200 -FVYAVGGWDGSCRLDSVERYDPTKNE--WSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 200 -~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
.+|+..-. ...+..||..++. ...+..++.....|.++.. ++.+|+..-. .+.+..||..++.
T Consensus 92 ~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-------~~~v~v~d~~~~g 159 (330)
T PRK11028 92 RFLFSASYN-----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-------EDRIRLFTLSDDG 159 (330)
T ss_pred CEEEEEEcC-----CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-------CCEEEEEEECCCC
Confidence 56765321 2457777775331 1122222222223444333 3467766543 3578999886532
Q ss_pred -eeecc----CCCCCceeeeEEEE-C-CeEEEEcCcCCCCCCCCeEEEEECC--CCeEEE---ccCCcC----ccCcceE
Q psy2979 275 -WQDLA----PMLIPRSGAAICAL-D-SCIYVLGGWHASTENTNRVECYHIA--ENTWEY---KSPMKE----KRYRPGI 338 (400)
Q Consensus 275 -W~~~~----~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~--~~~W~~---~~~~~~----~~~~~~~ 338 (400)
..... ..+....-..++.. + ..+|+.... .+++..|+.. +++.+. +..+|. ++.. ..
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~------~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~ 232 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL------NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA-AD 232 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecC------CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc-ee
Confidence 21100 11111111123333 3 367776543 4566666664 445433 333332 2221 11
Q ss_pred EEE--C-CEEEEEcCccCCCCCCCeEEEEEC--CCCcEEEecCCCCCCCceeeEEEcccccccc
Q psy2979 339 AVI--D-GKIYVLGGEEGWDGYHDSIECYDV--DNDSWEIMSHLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 339 ~~~--~-~~lyv~GG~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
..+ + ..+|+.... .+.|.+|+. .+..++.+...+....-..+++-.+..++++
T Consensus 233 i~~~pdg~~lyv~~~~------~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 233 IHITPDGRHLYACDRT------ASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEECCCCCEEEEecCC------CCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEE
Confidence 222 3 457776332 245666655 4445665554433222223444445555544
No 77
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.85 E-value=0.04 Score=47.73 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=80.9
Q ss_pred EEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 240 AVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 240 ~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
+... .+|.+|..-|. -| .+.+.+||+.+.+-....++|...++=+++.++++||.+-=. ......||+
T Consensus 49 GL~~~~~g~LyESTG~---yG--~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~yd~ 117 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGL---YG--QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK------EGTGFVYDP 117 (264)
T ss_dssp EEEEEETTEEEEEECS---TT--EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS------SSEEEEEET
T ss_pred cEEecCCCEEEEeCCC---CC--cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec------CCeEEEEcc
Confidence 4455 67899988776 44 468999999999988778899988999999999999999744 568999999
Q ss_pred CCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 319 AENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 319 ~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
.+ .+.+...+.+..+-+++.-+..+++.-|. +.++..||++-
T Consensus 118 ~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDGS-------~~L~~~dP~~f 159 (264)
T PF05096_consen 118 NT--LKKIGTFPYPGEGWGLTSDGKRLIMSDGS-------SRLYFLDPETF 159 (264)
T ss_dssp TT--TEEEEEEE-SSS--EEEECSSCEEEE-SS-------SEEEEE-TTT-
T ss_pred cc--ceEEEEEecCCcceEEEcCCCEEEEECCc-------cceEEECCccc
Confidence 76 45556666667888898778888888775 67888998864
No 78
>KOG0310|consensus
Probab=96.78 E-value=0.24 Score=45.85 Aligned_cols=215 Identities=13% Similarity=0.148 Sum_probs=113.3
Q ss_pred CCeEEEEE-eecCEEEEEECCCCC-eEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceE-EccCC
Q psy2979 156 GRNTIYCL-DIVDIVYVAASMHKI-LHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWS-YIEPM 232 (400)
Q Consensus 156 ~~~~iyv~-~~~~~~~~yd~~~~~-w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~l 232 (400)
+|. ++.. +....+..||..+.. ...+..-..|-..--....++.+++.|+-+. .+..+|..+..=+ .+..-
T Consensus 79 DG~-LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~-----v~k~~d~s~a~v~~~l~~h 152 (487)
T KOG0310|consen 79 DGR-LLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDK-----VVKYWDLSTAYVQAELSGH 152 (487)
T ss_pred CCe-EEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCc-----eEEEEEcCCcEEEEEecCC
Confidence 566 7777 667788899944311 1111111112111122335788888887542 2445566555421 11111
Q ss_pred CCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCC
Q psy2979 233 KLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTN 311 (400)
Q Consensus 233 ~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~ 311 (400)
......-+....++.|.+.||+ |+ .|-.||..+.+ ..+..+.....--.+..+ +|.+++..| -+
T Consensus 153 tDYVR~g~~~~~~~hivvtGsY---Dg----~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAg-------Gn 217 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSY---DG----KVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAG-------GN 217 (487)
T ss_pred cceeEeeccccCCCeEEEecCC---Cc----eEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcC-------CC
Confidence 1122222334468899999999 77 68889988774 333333322111223333 434444433 24
Q ss_pred eEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEE
Q psy2979 312 RVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPL 389 (400)
Q Consensus 312 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 389 (400)
.|-.+|..++.= .+..+......-++..+ ++.=.+.||. + ..|-+|| +..|+.+-.+..|---.++++-
T Consensus 218 ~vkVWDl~~G~q-ll~~~~~H~KtVTcL~l~s~~~rLlS~sL-D-----~~VKVfd--~t~~Kvv~s~~~~~pvLsiavs 288 (487)
T KOG0310|consen 218 SVKVWDLTTGGQ-LLTSMFNHNKTVTCLRLASDSTRLLSGSL-D-----RHVKVFD--TTNYKVVHSWKYPGPVLSIAVS 288 (487)
T ss_pred eEEEEEecCCce-ehhhhhcccceEEEEEeecCCceEeeccc-c-----cceEEEE--ccceEEEEeeecccceeeEEec
Confidence 788888775431 12222211111122222 4566677777 3 3578999 5678888776655555666666
Q ss_pred cccccccccCC
Q psy2979 390 QIHKSQFVDKS 400 (400)
Q Consensus 390 ~~~~~~~~~~~ 400 (400)
++...+++|++
T Consensus 289 ~dd~t~viGms 299 (487)
T KOG0310|consen 289 PDDQTVVIGMS 299 (487)
T ss_pred CCCceEEEecc
Confidence 77777777654
No 79
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.72 E-value=0.35 Score=42.11 Aligned_cols=180 Identities=10% Similarity=0.100 Sum_probs=81.6
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS 238 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~ 238 (400)
+++......+..||..+++....-. .....-.++... ++.+++.|+.+ ..+..||+.+.+-...-. .....-
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~-~~~~~i 138 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTLR-GHTDWV 138 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEec-cCCCcE
Confidence 4444556678888887643211111 011111122222 34666666533 458888987554322211 111111
Q ss_pred cEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCc-eeeeEEEE-CCeEEEEcCcCCCCCCCCeEEE
Q psy2979 239 PAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPR-SGAAICAL-DSCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 239 ~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 315 (400)
.++... ++.+++.|+. + ..+..||..+.+- +..+.... ...++... ++..+++++. ...+..
T Consensus 139 ~~~~~~~~~~~l~~~~~---~----~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~------~~~i~i 203 (289)
T cd00200 139 NSVAFSPDGTFVASSSQ---D----GTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSS------DGTIKL 203 (289)
T ss_pred EEEEEcCcCCEEEEEcC---C----CcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecC------CCcEEE
Confidence 122222 2455555553 2 3688888864331 11111111 11222222 4435555554 346888
Q ss_pred EECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 316 YHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 316 yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
||..+.+.... +............ ++++++.++. ...+..||..+.
T Consensus 204 ~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~------~~~i~i~~~~~~ 251 (289)
T cd00200 204 WDLSTGKCLGT--LRGHENGVNSVAFSPDGYLLASGSE------DGTIRVWDLRTG 251 (289)
T ss_pred EECCCCceecc--hhhcCCceEEEEEcCCCcEEEEEcC------CCcEEEEEcCCc
Confidence 99876543222 2111111122222 3566666653 246888988764
No 80
>PRK13684 Ycf48-like protein; Provisional
Probab=96.64 E-value=0.54 Score=43.15 Aligned_cols=210 Identities=13% Similarity=0.159 Sum_probs=105.8
Q ss_pred CceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccC-CCCcc-eeeeEEEECCEEEEEcccCCCCC
Q psy2979 135 KVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGS-LKFDF-DVSGIAMLDGFVYAVGGWDGSCR 212 (400)
Q Consensus 135 ~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~-~~~~r-~~~~~~~~~~~iyv~GG~~~~~~ 212 (400)
..|.+.. +|.......+...+....|++.....++.=.-.-.+|+.... ++... ...++...++..|++|..
T Consensus 35 ~~W~~~~-~~~~~~l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~----- 108 (334)
T PRK13684 35 SPWQVID-LPTEANLLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVGQP----- 108 (334)
T ss_pred CCcEEEe-cCCCCceEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeCCC-----
Confidence 3576654 343444455565554435655444444443334568998653 32222 222333335556766531
Q ss_pred CCeEEEEeCCCCceEEccCC-CCcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeE
Q psy2979 213 LDSVERYDPTKNEWSYIEPM-KLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAI 290 (400)
Q Consensus 213 ~~~v~~yd~~~~~W~~~~~l-~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~ 290 (400)
..+++=+-.-.+|+.+... ..+........+ ++.+|+.|.. ..+++=+-...+|+.+.... .-..+.+
T Consensus 109 -g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~--------G~i~~S~DgG~tW~~~~~~~-~g~~~~i 178 (334)
T PRK13684 109 -SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV--------GAIYRTTDGGKNWEALVEDA-AGVVRNL 178 (334)
T ss_pred -ceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc--------ceEEEECCCCCCceeCcCCC-cceEEEE
Confidence 1233323334589988521 111122223333 3456666544 25677666788999886433 2244455
Q ss_pred EEECCeEEEEcCcCCCCCCCCeEEEE-ECCCCeEEEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEE--C
Q psy2979 291 CALDSCIYVLGGWHASTENTNRVECY-HIAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYD--V 366 (400)
Q Consensus 291 ~~~~~~iyv~GG~~~~~~~~~~v~~y-d~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd--~ 366 (400)
....+..+++.|. ...++.- |....+|+.+.. +..+...++... +++++++|.. . ...+. -
T Consensus 179 ~~~~~g~~v~~g~------~G~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~-G-------~~~~~s~d 243 (334)
T PRK13684 179 RRSPDGKYVAVSS------RGNFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARG-G-------QIRFNDPD 243 (334)
T ss_pred EECCCCeEEEEeC------CceEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecC-C-------EEEEccCC
Confidence 5554444444443 2334433 445567998854 333344444333 6788888753 1 23342 2
Q ss_pred CCCcEEEec
Q psy2979 367 DNDSWEIMS 375 (400)
Q Consensus 367 ~~~~W~~~~ 375 (400)
...+|+.+.
T Consensus 244 ~G~sW~~~~ 252 (334)
T PRK13684 244 DLESWSKPI 252 (334)
T ss_pred CCCcccccc
Confidence 334899753
No 81
>KOG2055|consensus
Probab=96.61 E-value=0.066 Score=49.17 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=87.9
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc--EEEEeCCE-EEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP--AVVAHEGM-LYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~--~~~~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
...+.+++|.++. -.++..|-.+|. .+.++....+-- +...-+|. ..+++|. ..-++.||..+.+
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-------rky~ysyDle~ak 291 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-------RKYLYSYDLETAK 291 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc-------ceEEEEeeccccc
Confidence 3467788887643 234444555554 444433211111 11222454 7777787 4678999999999
Q ss_pred eeeccCCC---CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCc
Q psy2979 275 WQDLAPML---IPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 275 W~~~~~~~---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
-+++.++. .+-...-.+..++.+.++-|. ...+......|+.|..--.++..........-+.+|++.||.
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~------~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~ 365 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT 365 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEccc------CceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC
Confidence 99887654 112222234445666666666 456778888888886544444333333333335668888886
Q ss_pred cCCCCCCCeEEEEECCCC
Q psy2979 352 EGWDGYHDSIECYDVDND 369 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~~ 369 (400)
.+||++|...+
T Consensus 366 -------GeV~v~nl~~~ 376 (514)
T KOG2055|consen 366 -------GEVYVWNLRQN 376 (514)
T ss_pred -------ceEEEEecCCc
Confidence 47999999887
No 82
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.51 E-value=0.069 Score=47.25 Aligned_cols=109 Identities=18% Similarity=0.262 Sum_probs=67.5
Q ss_pred CCeEEEEeCCCCceEEccCCCCcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC-----CCCCce
Q psy2979 213 LDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP-----MLIPRS 286 (400)
Q Consensus 213 ~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~-----~~~~r~ 286 (400)
-..+-.||+.+.+|..+..=-.... ..+.-. ++++|+.|-.+..+. ....+-.||..+.+|+.++. +|.+..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V-~~l~~~~~~~Llv~G~ft~~~~-~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTV-TDLQWASNNQLLVGGNFTLNGT-NSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEE-EEEEEecCCEEEEEEeeEECCC-CceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 4567889999999998754211111 122223 678887775532221 25678999999999998875 344433
Q ss_pred eeeEEEEC-CeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC
Q psy2979 287 GAAICALD-SCIYVLGGWHASTENTNRVECYHIAENTWEYKSP 328 (400)
Q Consensus 287 ~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 328 (400)
.......+ +.+++.|.. . .. ..-+..|| ..+|..+..
T Consensus 93 a~~~~~~d~~~~~~aG~~-~-~g-~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRS-A-NG-STFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEecee-c-CC-CceEEEEc--CCceEeccc
Confidence 33333333 367777765 2 22 45677885 778998875
No 83
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.50 E-value=0.59 Score=41.95 Aligned_cols=238 Identities=16% Similarity=0.173 Sum_probs=106.0
Q ss_pred CCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCC-CCc-c-eeeeEEEECCEEEEEcccCC
Q psy2979 133 KTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSL-KFD-F-DVSGIAMLDGFVYAVGGWDG 209 (400)
Q Consensus 133 ~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~-~~~-r-~~~~~~~~~~~iyv~GG~~~ 209 (400)
....|..+. +|.......+...+...-|++.....++.=+---.+|+....- ..+ . ...++...++..|++|..
T Consensus 4 ~~~~W~~v~-l~t~~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~-- 80 (302)
T PF14870_consen 4 SGNSWQQVS-LPTDKPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP-- 80 (302)
T ss_dssp SS--EEEEE--S-SS-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET--
T ss_pred cCCCcEEee-cCCCCceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC--
Confidence 345688765 4444455566666555467775555555544445679987642 222 2 223344457788988642
Q ss_pred CCCCCeEEEEeCCCCceEEcc-CCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCcee
Q psy2979 210 SCRLDSVERYDPTKNEWSYIE-PMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSG 287 (400)
Q Consensus 210 ~~~~~~v~~yd~~~~~W~~~~-~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~ 287 (400)
..+.+-.-.-.+|+.++ +.+.+-..+.... -++.+.++|.. ..+++=.-...+|+.+..-... ..
T Consensus 81 ----g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~--------G~iy~T~DgG~tW~~~~~~~~g-s~ 147 (302)
T PF14870_consen 81 ----GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR--------GAIYRTTDGGKTWQAVVSETSG-SI 147 (302)
T ss_dssp ----TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----------EEEESSTTSSEEEEE-S-----E
T ss_pred ----ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC--------CcEEEeCCCCCCeeEcccCCcc-ee
Confidence 22444444567899985 1122222233333 45667776654 3577777778899987543322 22
Q ss_pred eeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEE-
Q psy2979 288 AAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYD- 365 (400)
Q Consensus 288 ~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd- 365 (400)
..+... ++++++++.. -+-....|+....|+........|...-...-++.|+++. . ++ .+..=+
T Consensus 148 ~~~~r~~dG~~vavs~~------G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~-Gg-----~~~~s~~ 214 (302)
T PF14870_consen 148 NDITRSSDGRYVAVSSR------GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-R-GG-----QIQFSDD 214 (302)
T ss_dssp EEEEE-TTS-EEEEETT------SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-T-TT-----EEEEEE-
T ss_pred EeEEECCCCcEEEEECc------ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-C-Cc-----EEEEccC
Confidence 223333 6676666643 1234467888888988765433332222223367787764 1 11 233333
Q ss_pred -CCCCcEEEecCCCCCCCc---eeeEEEcccccccccCC
Q psy2979 366 -VDNDSWEIMSHLPSARSW---LGCVPLQIHKSQFVDKS 400 (400)
Q Consensus 366 -~~~~~W~~~~~~~~~r~~---~~~~~~~~~~~~~~~~~ 400 (400)
-..++|.+. ..|....+ ..++.-+++.++.+||+
T Consensus 215 ~~~~~~w~~~-~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 215 PDDGETWSEP-IIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp TTEEEEE----B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred CCCccccccc-cCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 234567772 23332222 44555566666666664
No 84
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.48 E-value=0.88 Score=43.71 Aligned_cols=190 Identities=11% Similarity=0.052 Sum_probs=97.7
Q ss_pred cCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeC
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE 245 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~ 245 (400)
...++.+|+.+++-..+...+..........-++.|++....++ ...++.+|..+++.+.+..-.......+...-+
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG 317 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHRAIDTEPSWHPDG 317 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCCCccceEECCCC
Confidence 34688999988876666554322111111112345655543322 256899999999887775432211111111223
Q ss_pred CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECC-eEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 246 GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDS-CIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
..|++.... ++ ...++.+|..+.+++.+..-. .........-++ .|+..+ .... ...++.+|+.++...
T Consensus 318 ~~I~f~s~~---~g--~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~-~~~g---~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 318 KSLIFTSER---GG--KPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVN-RTNG---KFNIARQDLETGAMQ 387 (448)
T ss_pred CEEEEEECC---CC--CceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEE-ecCC---ceEEEEEECCCCCeE
Confidence 455554332 22 357999999988888774211 111112223344 444443 2221 347899999998887
Q ss_pred EccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 325 YKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
.+..-... ..+. ..-+|+..++... .+ ....++.+|.. +.+...
T Consensus 388 ~lt~~~~d-~~ps-~spdG~~I~~~~~-~~--g~~~l~~~~~~-G~~~~~ 431 (448)
T PRK04792 388 VLTSTRLD-ESPS-VAPNGTMVIYSTT-YQ--GKQVLAAVSID-GRFKAR 431 (448)
T ss_pred EccCCCCC-CCce-ECCCCCEEEEEEe-cC--CceEEEEEECC-CCceEE
Confidence 76543211 1222 2234543333322 11 12467888874 445443
No 85
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.42 E-value=0.28 Score=44.20 Aligned_cols=227 Identities=12% Similarity=0.073 Sum_probs=105.2
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE----------eecCEEEEEECCCCCeEEccCCCC-cce---
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL----------DIVDIVYVAASMHKILHSLGSLKF-DFD--- 190 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~----------~~~~~~~~yd~~~~~w~~~~~~~~-~r~--- 190 (400)
..+.++|..+++. +..++..-..+.+..-+++.+|+. ....-+..||..+-+-..--.+|. +|.
T Consensus 17 ~rv~viD~d~~k~--lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKL--LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEE--EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcE--EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5788889888774 344444444454444556557876 455668999999875433222332 232
Q ss_pred ----eeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCcc------c-cCC
Q psy2979 191 ----VSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAI------L-EDG 259 (400)
Q Consensus 191 ----~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~------~-~~~ 259 (400)
.+++..-+..+||.- -.+..+|.+.|...++.-..-+.| -+.+.--.-++.++.+.|.. . .+|
T Consensus 95 ~~~~~~~ls~dgk~~~V~N----~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQN----FTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSGNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp --GGGEEE-TTSSEEEEEE----ESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEETTEEEEEETTSCEEEEEETSTS
T ss_pred ccccceEEccCCcEEEEEc----cCCCCeEEEEECCCCceeeeecCC--CEEEEEecCCCceEEEecCCceEEEEECCCC
Confidence 222222244666652 245678999999998764432222 11111111222333332210 0 133
Q ss_pred CC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCC-----CeEEEccCCcCcc
Q psy2979 260 DG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAE-----NTWEYKSPMKEKR 333 (400)
Q Consensus 260 ~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~-----~~W~~~~~~~~~~ 333 (400)
.. ...-..|++..+-...-+.........-...++|.+|-+.=.... ..-...+...+ ..|..-
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~---~~~~~~~~~~t~~e~~~~WrPG------- 238 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS---AKFGKPWSLLTDAEKADGWRPG------- 238 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS---EEEEEEEESS-HHHHHTTEEE--------
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc---ccccCcccccCccccccCcCCc-------
Confidence 32 233346666655433322221111122335667777774321111 11111222211 234322
Q ss_pred CcceEEEE---CCEEEEEc---CccCCCCCCCeEEEEECCCCc
Q psy2979 334 YRPGIAVI---DGKIYVLG---GEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 334 ~~~~~~~~---~~~lyv~G---G~~~~~~~~~~v~~yd~~~~~ 370 (400)
+....++ .++|||+= +..........||+||+++.+
T Consensus 239 -G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k 280 (342)
T PF06433_consen 239 -GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK 280 (342)
T ss_dssp -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE
T ss_pred -ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe
Confidence 1222233 68999872 221222345789999999984
No 86
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.39 E-value=0.77 Score=42.15 Aligned_cols=112 Identities=7% Similarity=-0.123 Sum_probs=65.7
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE-e---------ecCEEEEEECCCCCe
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL-D---------IVDIVYVAASMHKIL 179 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~-~---------~~~~~~~yd~~~~~w 179 (400)
..+|+.......- .+.+.++|..+.+-. ..++.....+.+..-+++.+|+. . ....+..||+.+.+-
T Consensus 13 ~~v~V~d~~~~~~-~~~v~ViD~~~~~v~--g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 13 RRVYVLDPGHFAA-TTQVYTIDGEAGRVL--GMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CEEEEECCccccc-CceEEEEECCCCEEE--EEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 3566664432112 278889998885533 34444333344444566558888 3 567899999998875
Q ss_pred EE-ccCCCCcce-------eeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEE
Q psy2979 180 HS-LGSLKFDFD-------VSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSY 228 (400)
Q Consensus 180 ~~-~~~~~~~r~-------~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 228 (400)
.. ++..+.||. .+++..-+..+||.- ....+++.+.|..+++-..
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n----~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ----FSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEec----CCCCCEEEEEECCCCcEEE
Confidence 53 333334441 222222244677752 1235789999999887544
No 87
>KOG2048|consensus
Probab=96.37 E-value=1.1 Score=43.55 Aligned_cols=248 Identities=14% Similarity=0.101 Sum_probs=129.2
Q ss_pred ccceEEEEEcCCCceEEcc--CCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeE-EccCCCCcceeeeEEEECC
Q psy2979 123 VLRSVEGFCVKTKVWKTLS--CLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILH-SLGSLKFDFDVSGIAMLDG 199 (400)
Q Consensus 123 ~~~~~~~yd~~~~~w~~~~--~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~-~~~~~~~~r~~~~~~~~~~ 199 (400)
....+|.|++.. .|...+ ..|..|+--+.+-.++.++|.......+-.+|+.+.+=. .+.+...+-+..++. -.+
T Consensus 45 t~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~-p~~ 122 (691)
T KOG2048|consen 45 TDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAIN-PEN 122 (691)
T ss_pred cCCcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeC-Ccc
Confidence 446899999987 676443 345666666777774444888866666666776654311 111111111211111 123
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEE-EEcCccccCCCCcceEEEEeCCCCceeec
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLY-VTGGAILEDGDGIEQVQRYNPKVNQWQDL 278 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iy-v~GG~~~~~~~~~~~v~~yd~~~~~W~~~ 278 (400)
.+..+|..++ .+..++...+.-+.-..++..-...-....+.... ++||.. |+ -+-++|..+.+=-.+
T Consensus 123 ~~l~IgcddG-----vl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--Dg----~Iriwd~~~~~t~~~ 191 (691)
T KOG2048|consen 123 TILAIGCDDG-----VLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--DG----VIRIWDVKSGQTLHI 191 (691)
T ss_pred ceEEeecCCc-----eEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--Cc----eEEEEEcCCCceEEE
Confidence 4444443332 23334444444444344444333333344455555 677762 33 367778776654443
Q ss_pred cCCCC-------CceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCcc-CcceEEEE-CCEEEEEc
Q psy2979 279 APMLI-------PRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR-YRPGIAVI-DGKIYVLG 349 (400)
Q Consensus 279 ~~~~~-------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~-~~~~~~~~-~~~lyv~G 349 (400)
-.|.. +..-.++..+.+...+.|.. ..+|-.+|+...+-.+ +..... ...++++- ++.-++.+
T Consensus 192 ~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS------~G~V~FWd~~~gTLiq--S~~~h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 192 ITMQLDRLSKREPTIVWSVLFLRDSTIASGDS------AGTVTFWDSIFGTLIQ--SHSCHDADVLALAVADNEDRVFSA 263 (691)
T ss_pred eeecccccccCCceEEEEEEEeecCcEEEecC------CceEEEEcccCcchhh--hhhhhhcceeEEEEcCCCCeEEEc
Confidence 22221 22234555667777777765 5688888887765322 111111 11223333 32344555
Q ss_pred CccCCCCCCCeEEEEECCCC--cEEEecC-CCCCCCceeeEEEcccccccccC
Q psy2979 350 GEEGWDGYHDSIECYDVDND--SWEIMSH-LPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~~~~--~W~~~~~-~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
|. + ..+..|...++ +|..... .-.++.--+++++++ .++-||
T Consensus 264 Gv-d-----~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 264 GV-D-----PKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred cC-C-----CceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecc
Confidence 65 2 45677766554 5887743 445677778888887 455555
No 88
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.29 E-value=1.1 Score=42.95 Aligned_cols=146 Identities=8% Similarity=0.025 Sum_probs=81.4
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL 293 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 293 (400)
..++.+|+.+++-+.+...+.........--+..|++.... ++ ...++.+|..+.+.+.+..-.... ......-
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~---~g--~~~Iy~~dl~tg~~~~lt~~~~~~-~~p~wSp 315 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSK---DG--QPEIYVVDIATKALTRITRHRAID-TEPSWHP 315 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeC---CC--CeEEEEEECCCCCeEECccCCCCc-cceEECC
Confidence 56899999988877766554322222222224456655333 33 347999999998888775432111 1112223
Q ss_pred CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcce-EEEECC-EEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 294 DS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPG-IAVIDG-KIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 294 ~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
++ .|++.....+ ...++.+|..+++++.+... ...... ...-+| .|++.+.. . ....++.+|+.+++
T Consensus 316 DG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~--g~~~~~~~~SpDG~~l~~~~~~-~---g~~~I~~~dl~~g~ 385 (448)
T PRK04792 316 DGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFE--GEQNLGGSITPDGRSMIMVNRT-N---GKFNIARQDLETGA 385 (448)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCEEEEecC--CCCCcCeeECCCCCEEEEEEec-C---CceEEEEEECCCCC
Confidence 44 4544432211 35799999999988877421 111111 222244 45554322 1 23578999999988
Q ss_pred EEEec
Q psy2979 371 WEIMS 375 (400)
Q Consensus 371 W~~~~ 375 (400)
.+.+.
T Consensus 386 ~~~lt 390 (448)
T PRK04792 386 MQVLT 390 (448)
T ss_pred eEEcc
Confidence 77664
No 89
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.28 E-value=0.76 Score=40.91 Aligned_cols=175 Identities=16% Similarity=0.112 Sum_probs=82.7
Q ss_pred cCEEEEEECCCCCeEEccCC-CCcceeeeEEEE-C-CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE
Q psy2979 166 VDIVYVAASMHKILHSLGSL-KFDFDVSGIAML-D-GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV 242 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~-~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~ 242 (400)
...+..+|+.+++-...-.. ..++ +++.. + +.+|+.++.+ ..+..||..+++....-+.... ...++
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~--~~~~~ 79 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTLPSGPD--PELFA 79 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEeccCCCC--ccEEE
Confidence 35677788776653322111 1122 12222 3 3577776533 4688899988766432111111 11222
Q ss_pred E-e-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEE-EECCeEEEEcCcCCCCCCCCeEEEEECC
Q psy2979 243 A-H-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAIC-ALDSCIYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 243 ~-~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
. - ++.+|+.++. + ..+..||..+.+- +..++......+++ .-++.+++++..+ ...+..||..
T Consensus 80 ~~~~g~~l~~~~~~---~----~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~-----~~~~~~~d~~ 145 (300)
T TIGR03866 80 LHPNGKILYIANED---D----NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSET-----TNMAHFIDTK 145 (300)
T ss_pred ECCCCCEEEEEcCC---C----CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecC-----CCeEEEEeCC
Confidence 2 2 3457776654 2 3688999877542 22122111112222 2366776666432 2346667877
Q ss_pred CCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 320 ENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 320 ~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+.+-........ +.......-+++.+++++. . ...+..||.++.+
T Consensus 146 ~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~-~----~~~v~i~d~~~~~ 190 (300)
T TIGR03866 146 TYEIVDNVLVDQ-RPRFAEFTADGKELWVSSE-I----GGTVSVIDVATRK 190 (300)
T ss_pred CCeEEEEEEcCC-CccEEEECCCCCEEEEEcC-C----CCEEEEEEcCcce
Confidence 654322111111 1111122225554434432 1 2368889988764
No 90
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.26 E-value=0.7 Score=40.27 Aligned_cols=181 Identities=15% Similarity=0.159 Sum_probs=109.1
Q ss_pred cEEEEEeccCCCcccceEEEEE----c-CCCceEEccCCcccceeeeEEEECCeEEEEE-eecCEEEEEECCCCCeEEcc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFC----V-KTKVWKTLSCLPFAISKHGLVVSGRNTIYCL-DIVDIVYVAASMHKILHSLG 183 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd----~-~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~-~~~~~~~~yd~~~~~w~~~~ 183 (400)
+.++++.+.... .+..|. . ..++..+.-.||.+-.+.+.++.+|. +|.- ..++.+..||..+++-....
T Consensus 31 ~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngs-lYY~~~~s~~IvkydL~t~~v~~~~ 105 (250)
T PF02191_consen 31 EKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGS-LYYNKYNSRNIVKYDLTTRSVVARR 105 (250)
T ss_pred CCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCc-EEEEecCCceEEEEECcCCcEEEEE
Confidence 678888776532 444443 2 23333333456777777888889999 8776 66788999999998765333
Q ss_pred CCCCcc------------eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCC----CceEEccCCCCcccccEEEEeCCE
Q psy2979 184 SLKFDF------------DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTK----NEWSYIEPMKLAVTSPAVVAHEGM 247 (400)
Q Consensus 184 ~~~~~r------------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~~l~~~~~~~~~~~~~~~ 247 (400)
.+|.+. ...-.++-++-|+|+-........-.+-+.||.+ .+|.. ..+.+....+ ..+=|.
T Consensus 106 ~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k~~~~na-FmvCGv 182 (250)
T PF02191_consen 106 ELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPKRSAGNA-FMVCGV 182 (250)
T ss_pred ECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCchhhcce-eeEeeE
Confidence 333221 2234555577788886655443334456667764 46764 3454444443 334468
Q ss_pred EEEEcCccccCCCCcceEEEEeCCCCceeecc-CCCCCceeeeEEEE---CCeEEEEc
Q psy2979 248 LYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA-PMLIPRSGAAICAL---DSCIYVLG 301 (400)
Q Consensus 248 iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~---~~~iyv~G 301 (400)
+|++... +.....-.+.||..+++=..+. +++.+-...++..+ +.+||+..
T Consensus 183 LY~~~s~---~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 183 LYATDSY---DTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred EEEEEEC---CCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 9998765 3222345678999988766543 34444445555555 56788775
No 91
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.16 E-value=0.19 Score=45.87 Aligned_cols=119 Identities=15% Similarity=0.162 Sum_probs=81.6
Q ss_pred ceEEEEeCCCC-----ceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe-EEEccCCcCccCcc
Q psy2979 263 EQVQRYNPKVN-----QWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT-WEYKSPMKEKRYRP 336 (400)
Q Consensus 263 ~~v~~yd~~~~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~ 336 (400)
..+..|+.... ++..+.....+-.-.+++.+++++.+..| +.+..|+...++ +...+.+..+-...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~~~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDSPFYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-BSSSEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecceEEEE
Confidence 66888888774 56666544444446677788999766665 478888888888 88888776666666
Q ss_pred eEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEE-ccccc
Q psy2979 337 GIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPL-QIHKS 394 (400)
Q Consensus 337 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~~~ 394 (400)
.+.+.++.|++.--. . .-.++.|+.+..+-..++.-..++.-.++..+ ++..+
T Consensus 134 sl~~~~~~I~vgD~~-~----sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~ 187 (321)
T PF03178_consen 134 SLSVFKNYILVGDAM-K----SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTI 187 (321)
T ss_dssp EEEEETTEEEEEESS-S----SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEE
T ss_pred EEeccccEEEEEEcc-c----CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEE
Confidence 777888877654332 1 23566789877778888877778888888888 55433
No 92
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.14 E-value=0.4 Score=43.76 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=80.7
Q ss_pred CEEEEEECCCC-----CeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc-eEEccCCCCcccccE
Q psy2979 167 DIVYVAASMHK-----ILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE-WSYIEPMKLAVTSPA 240 (400)
Q Consensus 167 ~~~~~yd~~~~-----~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~l~~~~~~~~ 240 (400)
..+..|+.... +++.+.....+-.-.+++.+++++.+..| +.+..|+...++ +...+.+..+....+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~~~~~~~i~s 134 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKAFYDSPFYITS 134 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEEEE-BSSSEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEccCcccchhhheecceEEEEE
Confidence 56777887774 55555554444456677778999777766 568888888888 888887776666667
Q ss_pred EEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEc
Q psy2979 241 VVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLG 301 (400)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~G 301 (400)
+.+.++.|++..-. . .-.+..|+....+-..++.-..++...++..+ ++..++++
T Consensus 135 l~~~~~~I~vgD~~---~---sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 135 LSVFKNYILVGDAM---K---SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp EEEETTEEEEEESS---S---SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred EeccccEEEEEEcc---c---CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence 77888877765333 2 23566788877778888765667776666666 65544444
No 93
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.13 E-value=0.98 Score=41.70 Aligned_cols=208 Identities=17% Similarity=0.175 Sum_probs=103.5
Q ss_pred EEEEECCCCCeEEccCCCCcceeeeEEE--ECCEEEEEcccCCCCCCCeEEEE--eCCCCceEEccCCCCcccccEEEEe
Q psy2979 169 VYVAASMHKILHSLGSLKFDFDVSGIAM--LDGFVYAVGGWDGSCRLDSVERY--DPTKNEWSYIEPMKLAVTSPAVVAH 244 (400)
Q Consensus 169 ~~~yd~~~~~w~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~y--d~~~~~W~~~~~l~~~~~~~~~~~~ 244 (400)
++.||..++++..+......-.-.-++. -++.||+..... .....+..| +..+++.+.+...+..-...+...+
T Consensus 17 ~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~ 94 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAV 94 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEE
T ss_pred EEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEE
Confidence 3566778888877664321111111222 256899886543 122345444 5555788887665532223232332
Q ss_pred ---CCEEEEEcCccccCCCCcceEEEEeCCCC-ceeec---------cCC---CCCceeeeEEEE-C-CeEEEEcCcCCC
Q psy2979 245 ---EGMLYVTGGAILEDGDGIEQVQRYNPKVN-QWQDL---------APM---LIPRSGAAICAL-D-SCIYVLGGWHAS 306 (400)
Q Consensus 245 ---~~~iyv~GG~~~~~~~~~~~v~~yd~~~~-~W~~~---------~~~---~~~r~~~~~~~~-~-~~iyv~GG~~~~ 306 (400)
+..+|+..-. ..++..|+...+ .-... .+- ....+-|.+... + ..+|+..-.
T Consensus 95 ~~~g~~l~vany~-------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--- 164 (345)
T PF10282_consen 95 DPDGRFLYVANYG-------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--- 164 (345)
T ss_dssp CTTSSEEEEEETT-------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT---
T ss_pred ecCCCEEEEEEcc-------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC---
Confidence 4566765322 125666666553 11111 011 122334555555 3 467766422
Q ss_pred CCCCCeEEEEECCCCe--EEEccCCcCc-cCcceEEEE---CCEEEEEcCccCCCCCCCeEEEE--ECCCCcEEEec---
Q psy2979 307 TENTNRVECYHIAENT--WEYKSPMKEK-RYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECY--DVDNDSWEIMS--- 375 (400)
Q Consensus 307 ~~~~~~v~~yd~~~~~--W~~~~~~~~~-~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~y--d~~~~~W~~~~--- 375 (400)
.+.++.|+...+. .........+ -.++--.++ +..+|++... .+.|.+| +..++.++.+.
T Consensus 165 ---~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~------s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 165 ---ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL------SNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp ---TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT------TTEEEEEEEETTTTEEEEEEEEE
T ss_pred ---CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC------CCcEEEEeecccCCceeEEEEee
Confidence 5688888887665 5553322211 122222233 4579998765 3445554 44477776653
Q ss_pred CCCCC---C-CceeeEEEcccccccc
Q psy2979 376 HLPSA---R-SWLGCVPLQIHKSQFV 397 (400)
Q Consensus 376 ~~~~~---r-~~~~~~~~~~~~~~~~ 397 (400)
.+|.. . ..+.+++-.+..++++
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~~lyv 261 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGRFLYV 261 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred eccccccccCCceeEEEecCCCEEEE
Confidence 44332 1 3455666667777766
No 94
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.09 E-value=0.85 Score=39.63 Aligned_cols=143 Identities=10% Similarity=0.160 Sum_probs=66.8
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc-cccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV-TSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++..+++++.+ ..+..||..+++.... +.... .-.++... ++.+++.|+. + ..+..||..+.+-
T Consensus 62 ~~~~l~~~~~~-----~~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~---~----~~i~~~~~~~~~~ 127 (289)
T cd00200 62 DGTYLASGSSD-----KTIRLWDLETGECVRT--LTGHTSYVSSVAFSPDGRILSSSSR---D----KTIKVWDVETGKC 127 (289)
T ss_pred CCCEEEEEcCC-----CeEEEEEcCcccceEE--EeccCCcEEEEEEcCCCCEEEEecC---C----CeEEEEECCCcEE
Confidence 34455556543 4588888877532211 11111 11122222 3467777764 3 3788999875432
Q ss_pred e-eccCCCCCceeeeEEEEC-CeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCc
Q psy2979 276 Q-DLAPMLIPRSGAAICALD-SCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGE 351 (400)
Q Consensus 276 ~-~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~ 351 (400)
. .+.. ......++.... +.+++.|.. ...+..||..+.+-.. .+...........+ +++.+++++.
T Consensus 128 ~~~~~~--~~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 128 LTTLRG--HTDWVNSVAFSPDGTFVASSSQ------DGTIKLWDLRTGKCVA--TLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred EEEecc--CCCcEEEEEEcCcCCEEEEEcC------CCcEEEEEccccccce--eEecCccccceEEECCCcCEEEEecC
Confidence 2 2221 111122222333 455555542 3468888886543211 11111111122222 4445555554
Q ss_pred cCCCCCCCeEEEEECCCCc
Q psy2979 352 EGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~~~ 370 (400)
...+.+||..+.+
T Consensus 198 ------~~~i~i~d~~~~~ 210 (289)
T cd00200 198 ------DGTIKLWDLSTGK 210 (289)
T ss_pred ------CCcEEEEECCCCc
Confidence 2468889987643
No 95
>KOG0783|consensus
Probab=96.07 E-value=0.0056 Score=60.02 Aligned_cols=64 Identities=30% Similarity=0.486 Sum_probs=51.1
Q ss_pred HHHHHHHHhcC----ceeceEEEECCeEEehhhHHHhhcCcccccc----------------------ceeecCCCCHH-
Q psy2979 5 LTGFNEARKNN----EFCDVTLCVDGSKFPAHRVVLAASSPYFKVL----------------------ETIRLPQLSPY- 57 (400)
Q Consensus 5 l~~l~~~r~~~----~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m----------------------~~vrl~~l~~~- 57 (400)
-..|..|-.+. .|-||++.||++.|+|||-+|++.|++||-+ .++|+..+++.
T Consensus 542 e~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~m 621 (1267)
T KOG0783|consen 542 EGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLM 621 (1267)
T ss_pred hhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHH
Confidence 34455555444 4568999999999999999999999999855 57888888886
Q ss_pred --HHHHHhhhccc
Q psy2979 58 --FLHDCVEQCAI 68 (400)
Q Consensus 58 --~l~~~i~~~~l 68 (400)
+|+.+||++.+
T Consensus 622 fe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 622 FEILLHYIYTDTL 634 (1267)
T ss_pred HHHHHHHHhcccc
Confidence 88999998743
No 96
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.99 E-value=1.5 Score=41.79 Aligned_cols=185 Identities=10% Similarity=0.024 Sum_probs=97.2
Q ss_pred cCEEEEEECCCCCeEEccCCCCcceeeeEEEEC-CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDFDVSGIAMLD-GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH 244 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~ 244 (400)
...++.+|+.+++-+.+...+..-.... ..-+ ++|++....++ ...++.+|..+++.+.+..-+..........-
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~~~~~-~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spD 297 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLNGAPA-WSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKD 297 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCcCCeE-ECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCCCCcCCeEECCC
Confidence 3578999998887776654332111111 1123 35554332222 25789999999988877543321111221122
Q ss_pred CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECC-eEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDS-CIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+..|+..... ++ ...++.+|..+.+++.+.... .........-++ .|+...... . ...++.+|+.++..
T Consensus 298 g~~i~f~s~~---~g--~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~-~---~~~l~~~dl~tg~~ 367 (430)
T PRK00178 298 GRTLYFTSDR---GG--KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQD-G---NFHVAAQDLQRGSV 367 (430)
T ss_pred CCEEEEEECC---CC--CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccC-C---ceEEEEEECCCCCE
Confidence 3456655332 22 347899999888887764221 111111222244 454444221 1 34699999999988
Q ss_pred EEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 324 EYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
+.+...... ..+ ...-+|+.+++... .. ....++..+...+
T Consensus 368 ~~lt~~~~~-~~p-~~spdg~~i~~~~~-~~--g~~~l~~~~~~g~ 408 (430)
T PRK00178 368 RILTDTSLD-ESP-SVAPNGTMLIYATR-QQ--GRGVLMLVSINGR 408 (430)
T ss_pred EEccCCCCC-CCc-eECCCCCEEEEEEe-cC--CceEEEEEECCCC
Confidence 877643211 122 22336665555433 11 1346778887554
No 97
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.99 E-value=1.5 Score=41.77 Aligned_cols=146 Identities=9% Similarity=0.049 Sum_probs=81.3
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeC-CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE-GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
..++.+|+.+++-+.+...+...... ...-+ ++|++.... ++ ...++.+|..+...+.+..-+..-.. ....
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~-~~SpDG~~la~~~~~---~g--~~~Iy~~d~~~~~~~~lt~~~~~~~~-~~~s 295 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAP-AWSPDGSKLAFVLSK---DG--NPEIYVMDLASRQLSRVTNHPAIDTE-PFWG 295 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCe-EECCCCCEEEEEEcc---CC--CceEEEEECCCCCeEEcccCCCCcCC-eEEC
Confidence 57999999998877776544221111 12224 455544322 22 24799999999888877543221111 1222
Q ss_pred ECC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcce-EEEE-CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 293 LDS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPG-IAVI-DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 293 ~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~-~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
-++ .|+...... . ...++.+|..+++++.+.... ..... ...- ++.|+..... .+ ...++.+|+.++
T Consensus 296 pDg~~i~f~s~~~---g-~~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~-~~---~~~l~~~dl~tg 365 (430)
T PRK00178 296 KDGRTLYFTSDRG---G-KPQIYKVNVNGGRAERVTFVG--NYNARPRLSADGKTLVMVHRQ-DG---NFHVAAQDLQRG 365 (430)
T ss_pred CCCCEEEEEECCC---C-CceEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEEcc-CC---ceEEEEEECCCC
Confidence 244 555543221 1 357999999888887764221 11111 1112 4455555432 21 346999999998
Q ss_pred cEEEecC
Q psy2979 370 SWEIMSH 376 (400)
Q Consensus 370 ~W~~~~~ 376 (400)
.++.+..
T Consensus 366 ~~~~lt~ 372 (430)
T PRK00178 366 SVRILTD 372 (430)
T ss_pred CEEEccC
Confidence 8887754
No 98
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.95 E-value=1.6 Score=41.71 Aligned_cols=146 Identities=11% Similarity=0.005 Sum_probs=78.7
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL 293 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 293 (400)
..++.+|+.+++...+...+.........--+.+|++.... ++ ...++.+|..+.....+...+... ......-
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~---~g--~~~Iy~~d~~~~~~~~Lt~~~~~~-~~~~~sp 299 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQ---GG--NTDIYTMDLRSGTTTRLTDSPAID-TSPSYSP 299 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEec---CC--CceEEEEECCCCceEEccCCCCcc-CceeEcC
Confidence 67999999999888776655433332222223455544333 33 347999999888777765433211 1122223
Q ss_pred CCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEEC-CEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 294 DSC-IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVID-GKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 294 ~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
+++ |+...... . ...++.+|..++..+.+..... ........-+ +.|++.... .+ ...++.+|+.++..
T Consensus 300 DG~~i~f~s~~~---g-~~~Iy~~d~~g~~~~~lt~~~~-~~~~~~~SpdG~~ia~~~~~-~~---~~~i~~~d~~~~~~ 370 (435)
T PRK05137 300 DGSQIVFESDRS---G-SPQLYVMNADGSNPRRISFGGG-RYSTPVWSPRGDLIAFTKQG-GG---QFSIGVMKPDGSGE 370 (435)
T ss_pred CCCEEEEEECCC---C-CCeEEEEECCCCCeEEeecCCC-cccCeEECCCCCEEEEEEcC-CC---ceEEEEEECCCCce
Confidence 444 44332211 1 3579999988877776653221 1111111224 445444322 11 24788899877666
Q ss_pred EEe
Q psy2979 372 EIM 374 (400)
Q Consensus 372 ~~~ 374 (400)
+.+
T Consensus 371 ~~l 373 (435)
T PRK05137 371 RIL 373 (435)
T ss_pred Eec
Confidence 555
No 99
>KOG2055|consensus
Probab=95.93 E-value=0.92 Score=42.00 Aligned_cols=107 Identities=16% Similarity=0.211 Sum_probs=68.1
Q ss_pred CCE-EEEEcccCCCCCCCeEEEEeCCCCceEEccCCC---CcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCC
Q psy2979 198 DGF-VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK---LAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVN 273 (400)
Q Consensus 198 ~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~---~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 273 (400)
+|. ..+.+|.. .-++.||+.+.+-+++.++- ..-...--+..++.+.++.|. .| .+......|+
T Consensus 268 ~G~~~i~~s~rr-----ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~---~G----~I~lLhakT~ 335 (514)
T KOG2055|consen 268 NGHSVIFTSGRR-----KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN---NG----HIHLLHAKTK 335 (514)
T ss_pred CCceEEEecccc-----eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc---Cc----eEEeehhhhh
Confidence 444 56666643 45789999999988886643 112222234456667777777 43 5777788888
Q ss_pred ceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 274 QWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 274 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
.|----.++......+...-+..|+++|| ...||.+|..++..
T Consensus 336 eli~s~KieG~v~~~~fsSdsk~l~~~~~-------~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 336 ELITSFKIEGVVSDFTFSSDSKELLASGG-------TGEVYVWNLRQNSC 378 (514)
T ss_pred hhhheeeeccEEeeEEEecCCcEEEEEcC-------CceEEEEecCCcce
Confidence 77544344444444444444567888887 46899999998853
No 100
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.93 E-value=1.7 Score=41.65 Aligned_cols=232 Identities=10% Similarity=-0.029 Sum_probs=114.3
Q ss_pred cceEEEEEcCCCceEEccCCcccceeeeEEE-ECCeEEEEE---eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECC
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAISKHGLVV-SGRNTIYCL---DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDG 199 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~-~~~~~iyv~---~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~ 199 (400)
..+++..|.....-..+..-..+. ..... -++..|+.+ .....++.+|+.+++...+...+..-..... .-++
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v--~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~-SPDG 257 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLV--LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRF-SPDG 257 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCe--EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEE-CCCC
Confidence 557778876554433333211111 11111 234324333 2236799999998887776654432221111 1244
Q ss_pred -EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCC-EEEEEcCccccCCCCcceEEEEeCCCCceee
Q psy2979 200 -FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQD 277 (400)
Q Consensus 200 -~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 277 (400)
+|++....++ ...++.+|..+++...+..-+..... ....-++ .|+..... ++ ...++.+|..+...+.
T Consensus 258 ~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~~~~~~-~~~spDG~~i~f~s~~---~g--~~~Iy~~d~~g~~~~~ 328 (435)
T PRK05137 258 RKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSPAIDTS-PSYSPDGSQIVFESDR---SG--SPQLYVMNADGSNPRR 328 (435)
T ss_pred CEEEEEEecCC---CceEEEEECCCCceEEccCCCCccCc-eeEcCCCCEEEEEECC---CC--CCeEEEEECCCCCeEE
Confidence 5544433222 35688899998887776543322111 1222344 45443322 22 3478999988777776
Q ss_pred ccCCCCCceeeeEEEECC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCE-EEEEcCccCCC
Q psy2979 278 LAPMLIPRSGAAICALDS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGK-IYVLGGEEGWD 355 (400)
Q Consensus 278 ~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~ 355 (400)
+.... .........-+| .|++.. .... ...++.+|+.++....+..-. .-..+ ...-+|+ |+..... .+.
T Consensus 329 lt~~~-~~~~~~~~SpdG~~ia~~~-~~~~---~~~i~~~d~~~~~~~~lt~~~-~~~~p-~~spDG~~i~~~~~~-~~~ 400 (435)
T PRK05137 329 ISFGG-GRYSTPVWSPRGDLIAFTK-QGGG---QFSIGVMKPDGSGERILTSGF-LVEGP-TWAPNGRVIMFFRQT-PGS 400 (435)
T ss_pred eecCC-CcccCeEECCCCCEEEEEE-cCCC---ceEEEEEECCCCceEeccCCC-CCCCC-eECCCCCEEEEEEcc-CCC
Confidence 64321 111111222344 444433 2111 347889998777665554321 11111 1222555 4444322 211
Q ss_pred CCCCeEEEEECCCCcEEEec
Q psy2979 356 GYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 356 ~~~~~v~~yd~~~~~W~~~~ 375 (400)
.....++.+|..+..-+.++
T Consensus 401 ~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 401 GGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred CCcceEEEEECCCCceEEcc
Confidence 11257999999887666554
No 101
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.81 E-value=1.6 Score=40.67 Aligned_cols=201 Identities=17% Similarity=0.180 Sum_probs=106.9
Q ss_pred EEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCC--ceEE
Q psy2979 153 VVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKN--EWSY 228 (400)
Q Consensus 153 ~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~ 228 (400)
+..++. +|+......++.+|+.+.+ |.................-+++||+-.. ++ .+++||..++ .|+.
T Consensus 65 ~~~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~-~g-----~~y~ld~~~G~~~W~~ 137 (370)
T COG1520 65 ADGDGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW-DG-----KLYALDASTGTLVWSR 137 (370)
T ss_pred EeeCCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecc-cc-----eEEEEECCCCcEEEEE
Confidence 555667 8887555689999999887 8653332001111112222778777433 32 6889998654 5876
Q ss_pred ccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCC-CCCceeeeEEEECCeEEEEcCcCC
Q psy2979 229 IEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPM-LIPRSGAAICALDSCIYVLGGWHA 305 (400)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~-~~~r~~~~~~~~~~~iyv~GG~~~ 305 (400)
-.+-. .+..-..++.++.+|+... ...++++|..+.+ |+.-.+. ...+.....+..++.+|+-...
T Consensus 138 ~~~~~-~~~~~~~v~~~~~v~~~s~--------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~-- 206 (370)
T COG1520 138 NVGGS-PYYASPPVVGDGTVYVGTD--------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG-- 206 (370)
T ss_pred ecCCC-eEEecCcEEcCcEEEEecC--------CCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC--
Confidence 54332 3333344556777776631 1368888887544 8744332 2222222333556666665422
Q ss_pred CCCCCCeEEEEECCCC--eEEEccCCcCccCcc--eEEEECCEEEEEcCccCCCCCCCeEEEEECCCC--cEEEec
Q psy2979 306 STENTNRVECYHIAEN--TWEYKSPMKEKRYRP--GIAVIDGKIYVLGGEEGWDGYHDSIECYDVDND--SWEIMS 375 (400)
Q Consensus 306 ~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~--~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~ 375 (400)
. ...++.+|++++ .|+.-...+..+..- ......+.||+-|+. ........+.++|..+. .|+.-.
T Consensus 207 --~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 207 --Y-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGV-YAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred --C-cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcE-EEEecCCeEEEEEcCCCceEEEEec
Confidence 1 126999999766 488533333222211 122334555555442 11111234777777665 366543
No 102
>KOG0289|consensus
Probab=95.61 E-value=0.99 Score=41.50 Aligned_cols=139 Identities=13% Similarity=0.183 Sum_probs=79.4
Q ss_pred ccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCe
Q psy2979 236 VTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNR 312 (400)
Q Consensus 236 ~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 312 (400)
....+++.+ +|.|+..|-. ++ .+-.||.+... .++.+|..-.--....+ ||...+.+-. ..+
T Consensus 348 v~~ts~~fHpDgLifgtgt~---d~----~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~ad------d~~ 412 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTP---DG----VVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAAD------DGS 412 (506)
T ss_pred ceeEEeeEcCCceEEeccCC---Cc----eEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEec------CCe
Confidence 334444444 7888887766 54 68889987776 66666642222233333 4444444432 345
Q ss_pred EEEEECCCCeEEEccCCcCccC-cceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEE
Q psy2979 313 VECYHIAENTWEYKSPMKEKRY-RPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPL 389 (400)
Q Consensus 313 v~~yd~~~~~W~~~~~~~~~~~-~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 389 (400)
|..+|..+.+ ..+..+.+-. ......+ .|+..+++|. .-.|+.|+-.+.+|+++..++..-.-...+-.
T Consensus 413 V~lwDLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~------~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~F 484 (506)
T KOG0289|consen 413 VKLWDLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGS------DLQVYICKKKTKSWTEIKELADHSGLSTGVRF 484 (506)
T ss_pred EEEEEehhhc--ccceeeccccccceeEEEcCCCCeEEeecc------eeEEEEEecccccceeeehhhhcccccceeee
Confidence 8899987665 3333332221 1222223 4677777776 35788889999999999887765433334444
Q ss_pred cccccccc
Q psy2979 390 QIHKSQFV 397 (400)
Q Consensus 390 ~~~~~~~~ 397 (400)
++..-.++
T Consensus 485 g~~aq~l~ 492 (506)
T KOG0289|consen 485 GEHAQYLA 492 (506)
T ss_pred cccceEEe
Confidence 44333333
No 103
>KOG0310|consensus
Probab=95.55 E-value=1.3 Score=41.18 Aligned_cols=174 Identities=16% Similarity=0.191 Sum_probs=86.6
Q ss_pred eecCEEEEEECCCCCeEEccCCCC-cceeeeE-EEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCC---Ccccc
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKF-DFDVSGI-AMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK---LAVTS 238 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~-~r~~~~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~---~~~~~ 238 (400)
..+..+..|+..+..-.+ .... .+.-+++ ..-+|++...|+.+| .|..||..+.. .+-.+. .+...
T Consensus 45 t~S~rvqly~~~~~~~~k--~~srFk~~v~s~~fR~DG~LlaaGD~sG-----~V~vfD~k~r~--iLR~~~ah~apv~~ 115 (487)
T KOG0310|consen 45 TSSVRVQLYSSVTRSVRK--TFSRFKDVVYSVDFRSDGRLLAAGDESG-----HVKVFDMKSRV--ILRQLYAHQAPVHV 115 (487)
T ss_pred ecccEEEEEecchhhhhh--hHHhhccceeEEEeecCCeEEEccCCcC-----cEEEeccccHH--HHHHHhhccCceeE
Confidence 445567777765543111 0111 1122222 223799999998765 48889954421 111111 11111
Q ss_pred cEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCcee-eccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEE
Q psy2979 239 PAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ-DLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317 (400)
Q Consensus 239 ~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 317 (400)
--....++.+++.|+. +. .+..+|..+..-+ ++..-........+...+++|++.||+ ...|-.||
T Consensus 116 ~~f~~~d~t~l~s~sD---d~----v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY------Dg~vrl~D 182 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSD---DK----VVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY------DGKVRLWD 182 (487)
T ss_pred EEecccCCeEEEecCC---Cc----eEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC------CceEEEEE
Confidence 1223468899999886 32 3444555544421 111111222223344457899999999 45788888
Q ss_pred CCCC-eEEEccCCcCccCcceEEEE-C-CEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 318 IAEN-TWEYKSPMKEKRYRPGIAVI-D-GKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 318 ~~~~-~W~~~~~~~~~~~~~~~~~~-~-~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
.... .|.. .+..+..--.++.+ + ..|-..||. +|-++|..++
T Consensus 183 tR~~~~~v~--elnhg~pVe~vl~lpsgs~iasAgGn--------~vkVWDl~~G 227 (487)
T KOG0310|consen 183 TRSLTSRVV--ELNHGCPVESVLALPSGSLIASAGGN--------SVKVWDLTTG 227 (487)
T ss_pred eccCCceeE--EecCCCceeeEEEcCCCCEEEEcCCC--------eEEEEEecCC
Confidence 8776 4433 22221111123333 3 344445553 5666676543
No 104
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.52 E-value=2.3 Score=40.31 Aligned_cols=146 Identities=12% Similarity=0.045 Sum_probs=81.0
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeCC-EEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
..++.+|..+++...+...+....... ..-++ .|++.... ++ ...++.+|..+...+.+......... ....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~-~spDg~~l~~~~~~---~~--~~~i~~~d~~~~~~~~l~~~~~~~~~-~~~s 286 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPA-FSPDGSKLAVSLSK---DG--NPDIYVMDLDGKQLTRLTNGPGIDTE-PSWS 286 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceE-ECCCCCEEEEEECC---CC--CccEEEEECCCCCEEECCCCCCCCCC-EEEC
Confidence 578999999887766655443322222 22244 56655433 22 24789999988887777543221111 1112
Q ss_pred ECC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceE-EEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 293 LDS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGI-AVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 293 ~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
-++ +|++.....+ ...++.+|..++++..+.... ...... ..-+++.+++... .. ....++.+|+.++.
T Consensus 287 ~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~--~~~~~~~~spdg~~i~~~~~-~~--~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 287 PDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG--GYNASPSWSPDGDLIAFVHR-EG--GGFNIAVMDLDGGG 357 (417)
T ss_pred CCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC--CCccCeEECCCCCEEEEEEc-cC--CceEEEEEeCCCCC
Confidence 244 4544432211 347999999888887665322 111122 2225555555443 21 23579999999887
Q ss_pred EEEec
Q psy2979 371 WEIMS 375 (400)
Q Consensus 371 W~~~~ 375 (400)
++.+.
T Consensus 358 ~~~l~ 362 (417)
T TIGR02800 358 ERVLT 362 (417)
T ss_pred eEEcc
Confidence 77665
No 105
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.45 E-value=2.5 Score=40.39 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=80.4
Q ss_pred CCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 213 LDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 213 ~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
...++.+|..+++-..+...+.........--+.+|++.... ++ ...++.+|..+...+.+..-..... .....
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~---~g--~~~Iy~~d~~~g~~~~lt~~~~~~~-~~~~s 300 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSR---DG--NPEIYVMDLGSRQLTRLTNHFGIDT-EPTWA 300 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeC---CC--CceEEEEECCCCCeEECccCCCCcc-ceEEC
Confidence 356899999998887776654322222222223456554332 22 2479999998887766643221111 11222
Q ss_pred ECCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEE-EE-CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 293 LDSC-IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIA-VI-DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 293 ~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~-~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
-+++ |+......+ ...++.+|..+++++.+.... ....... .- +++|++..+. + ....++.+|+.++
T Consensus 301 pDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~-~---~~~~I~v~d~~~g 370 (433)
T PRK04922 301 PDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQG--NYNARASVSPDGKKIAMVHGS-G---GQYRIAVMDLSTG 370 (433)
T ss_pred CCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCC--CCccCEEECCCCCEEEEEECC-C---CceeEEEEECCCC
Confidence 2454 444432211 347899998888877764221 1221111 22 4456555432 2 1247999999988
Q ss_pred cEEEec
Q psy2979 370 SWEIMS 375 (400)
Q Consensus 370 ~W~~~~ 375 (400)
+.+.+.
T Consensus 371 ~~~~Lt 376 (433)
T PRK04922 371 SVRTLT 376 (433)
T ss_pred CeEECC
Confidence 887664
No 106
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.31 E-value=0.75 Score=45.08 Aligned_cols=119 Identities=17% Similarity=0.273 Sum_probs=71.0
Q ss_pred EEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCCCc--------eeeeEEEECCeEEEEcCcCCCCCC
Q psy2979 240 AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIPR--------SGAAICALDSCIYVLGGWHASTEN 309 (400)
Q Consensus 240 ~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~ 309 (400)
+-++.++.||+.... ..++++|..+.+ |+.-...+... ...+.+..+++||+...
T Consensus 64 tPvv~~g~vyv~s~~--------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------- 128 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY--------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------- 128 (527)
T ss_pred CCEEECCEEEEECCC--------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------
Confidence 345678999986543 258888887654 87654322111 12234566888887543
Q ss_pred CCeEEEEECCCCe--EEEcc-CCcCc-cCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc--EEEe
Q psy2979 310 TNRVECYHIAENT--WEYKS-PMKEK-RYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEIM 374 (400)
Q Consensus 310 ~~~v~~yd~~~~~--W~~~~-~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~ 374 (400)
...+.++|..+++ |+.-. ..... ....+-++.+++||+.... ........|..||.++++ |+.-
T Consensus 129 dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~-~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 129 DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISG-GEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecc-cccCCCcEEEEEECCCCceeEecc
Confidence 4579999998875 87532 22111 1222345568888775332 222234679999999874 7754
No 107
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.30 E-value=2.4 Score=39.16 Aligned_cols=258 Identities=16% Similarity=0.131 Sum_probs=125.6
Q ss_pred EEeccCCC-cccceEEEEEcCCCceEEccCCcccceeeeEEE-ECCeEEEEEe----ecCEEEEEECC--CCCeEEccCC
Q psy2979 114 AVGGEDDK-VVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVV-SGRNTIYCLD----IVDIVYVAASM--HKILHSLGSL 185 (400)
Q Consensus 114 ~~gg~~~~-~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~-~~~~~iyv~~----~~~~~~~yd~~--~~~w~~~~~~ 185 (400)
++|++... ..--....||..++++..+......-...-++. -++..||+.. ....+..|... +++.+.+...
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~ 82 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV 82 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee
Confidence 45555431 112234456678888876654332222122333 2344388883 34466555544 4677777665
Q ss_pred CC-cceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCC-ceEEcc---------CC---CCcccccEEEEe--CCE
Q psy2979 186 KF-DFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKN-EWSYIE---------PM---KLAVTSPAVVAH--EGM 247 (400)
Q Consensus 186 ~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~---------~l---~~~~~~~~~~~~--~~~ 247 (400)
+. ...-+.++.- +..+|+.--. ..++..|++..+ +-.... +- ...-.-|.+... ++.
T Consensus 83 ~~~g~~p~~i~~~~~g~~l~vany~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~ 157 (345)
T PF10282_consen 83 PSGGSSPCHIAVDPDGRFLYVANYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF 157 (345)
T ss_dssp EESSSCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE
T ss_pred ccCCCCcEEEEEecCCCEEEEEEcc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCE
Confidence 53 2322333332 4567775221 245777777653 222211 11 122223343333 356
Q ss_pred EEEEcCccccCCCCcceEEEEeCCCCc--eeeccC--CC---CCceeeeEEEEC-CeEEEEcCcCCCCCCCCeEEEEECC
Q psy2979 248 LYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAP--ML---IPRSGAAICALD-SCIYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 248 iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~--~~---~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
+|+..-. .+.++.|+..... ...... ++ .|| |.+..-+ ..+|++.-. .++|..|+..
T Consensus 158 v~v~dlG-------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR--h~~f~pdg~~~Yv~~e~------s~~v~v~~~~ 222 (345)
T PF10282_consen 158 VYVPDLG-------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR--HLAFSPDGKYAYVVNEL------SNTVSVFDYD 222 (345)
T ss_dssp EEEEETT-------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEE--EEEE-TTSSEEEEEETT------TTEEEEEEEE
T ss_pred EEEEecC-------CCEEEEEEEeCCCceEEEeeccccccCCCCc--EEEEcCCcCEEEEecCC------CCcEEEEeec
Confidence 7776432 4578888876665 544322 22 333 2233333 478898765 4555555544
Q ss_pred --CCeEEEcc---CCcCcc---CcceEEEE---CCEEEEEcCccCCCCCCCeEEEEEC--CCCcEEEecCCCC-CCCcee
Q psy2979 320 --ENTWEYKS---PMKEKR---YRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDV--DNDSWEIMSHLPS-ARSWLG 385 (400)
Q Consensus 320 --~~~W~~~~---~~~~~~---~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~-~r~~~~ 385 (400)
++.++.+. .+|... ...+...+ +..||+.-.. .+.|.+|+. ++++.+.+...+. +..=..
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~ 296 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------SNSISVFDLDPATGTLTLVQTVPTGGKFPRH 296 (345)
T ss_dssp TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT------TTEEEEEEECTTTTTEEEEEEEEESSSSEEE
T ss_pred ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc------CCEEEEEEEecCCCceEEEEEEeCCCCCccE
Confidence 77766654 444321 12333334 4568886532 467777776 5566766655443 222233
Q ss_pred eEEEcccccccc
Q psy2979 386 CVPLQIHKSQFV 397 (400)
Q Consensus 386 ~~~~~~~~~~~~ 397 (400)
+++-.+..++++
T Consensus 297 ~~~s~~g~~l~V 308 (345)
T PF10282_consen 297 FAFSPDGRYLYV 308 (345)
T ss_dssp EEE-TTSSEEEE
T ss_pred EEEeCCCCEEEE
Confidence 444444444444
No 108
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.28 E-value=1.2 Score=43.81 Aligned_cols=116 Identities=15% Similarity=0.218 Sum_probs=69.1
Q ss_pred EEECCEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCCcc--------cccEEEEeCCEEEEEcCccccCCCCcce
Q psy2979 195 AMLDGFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKLAV--------TSPAVVAHEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 195 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 264 (400)
++.++.||+.... ..+..+|..++ .|+.-...+... ...+.++.+++||+.... ..
T Consensus 66 vv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d--------g~ 131 (527)
T TIGR03075 66 LVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD--------AR 131 (527)
T ss_pred EEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC--------CE
Confidence 4568999986442 35888898876 487654433211 122346678888875332 36
Q ss_pred EEEEeCCCCc--eeecc-CCCCC-ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEE
Q psy2979 265 VQRYNPKVNQ--WQDLA-PMLIP-RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT--WEY 325 (400)
Q Consensus 265 v~~yd~~~~~--W~~~~-~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 325 (400)
+.++|..+.+ |+.-. ..... ....+-++.++.||+-........ ...+..||.++++ |+.
T Consensus 132 l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~-~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGV-RGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCC-CcEEEEEECCCCceeEec
Confidence 8999998776 86542 22111 122334556888777533222222 4579999998885 764
No 109
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.27 E-value=2.9 Score=39.99 Aligned_cols=184 Identities=15% Similarity=0.105 Sum_probs=96.5
Q ss_pred cCEEEEEECCCCCeEEccCCCCcceeeeEEEECC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH 244 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~ 244 (400)
...++.+|..+++-..+...+...... ...-++ +|++....++ ...++.+|+.+++...+..-.......+ ..-
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~-~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~~~~~~~~-~sp 301 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGAP-SFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHFGIDTEPT-WAP 301 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccCc-eECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCCCCccceE-ECC
Confidence 356888999888777666543211111 111234 5654432222 2578999999888766644322111112 222
Q ss_pred CC-EEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeee-EEEECC-eEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 245 EG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAA-ICALDS-CIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 245 ~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~-~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
++ .|+..... .+ ...++.+|..+.+++.+..-. ..... ...-++ .|++..+. . . ...++.+|+.++
T Consensus 302 DG~~l~f~sd~---~g--~~~iy~~dl~~g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~-~--~-~~~I~v~d~~~g 370 (433)
T PRK04922 302 DGKSIYFTSDR---GG--RPQIYRVAASGGSAERLTFQG--NYNARASVSPDGKKIAMVHGS-G--G-QYRIAVMDLSTG 370 (433)
T ss_pred CCCEEEEEECC---CC--CceEEEEECCCCCeEEeecCC--CCccCEEECCCCCEEEEEECC-C--C-ceeEEEEECCCC
Confidence 44 45544333 22 247899998888877764211 11111 222244 55554432 1 1 347999999988
Q ss_pred eEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 322 TWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 322 ~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+...+..-+.. ..+ ...-+|+.+++... . .....++.+|.....
T Consensus 371 ~~~~Lt~~~~~-~~p-~~spdG~~i~~~s~-~--~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 371 SVRTLTPGSLD-ESP-SFAPNGSMVLYATR-E--GGRGVLAAVSTDGRV 414 (433)
T ss_pred CeEECCCCCCC-CCc-eECCCCCEEEEEEe-c--CCceEEEEEECCCCc
Confidence 88876543211 111 22335665454433 2 123578889886543
No 110
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.25 E-value=1.5 Score=40.37 Aligned_cols=243 Identities=12% Similarity=0.011 Sum_probs=110.5
Q ss_pred ccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCE
Q psy2979 123 VLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGF 200 (400)
Q Consensus 123 ~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~ 200 (400)
....++..|+.+++-.+|+..+.....-+.+..++..+|.+.....++..|..+.+=+.+-..|..-...+..++ ++.
T Consensus 58 g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t 137 (386)
T PF14583_consen 58 GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCT 137 (386)
T ss_dssp SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSS
T ss_pred CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCcc
Confidence 456789999999999999877643332233444444365556667889999988876665555554443333333 233
Q ss_pred EEEEcccC------------------CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEE--EEEcCccccCC
Q psy2979 201 VYAVGGWD------------------GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGML--YVTGGAILEDG 259 (400)
Q Consensus 201 iyv~GG~~------------------~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~i--yv~GG~~~~~~ 259 (400)
.+ +|=.. .....+.+...|+.+++.+.+-.-.. --+|--.. .+..+ |+--|-- +.
T Consensus 138 ~~-~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~-wlgH~~fsP~dp~li~fCHEGpw--~~ 213 (386)
T PF14583_consen 138 KL-VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD-WLGHVQFSPTDPTLIMFCHEGPW--DL 213 (386)
T ss_dssp EE-EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS--EEEEEEETTEEEEEEEEE-S-T--TT
T ss_pred EE-EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc-cccCcccCCCCCCEEEEeccCCc--ce
Confidence 32 22110 01334556777888887665522111 01111111 12233 3333320 11
Q ss_pred CCcceEEEEeCCCCceeecc-CCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceE
Q psy2979 260 DGIEQVQRYNPKVNQWQDLA-PMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGI 338 (400)
Q Consensus 260 ~~~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~ 338 (400)
- -..+|..|........+. .++....+|---..+|..+.+-+...... ..-+..||+.+..=+.+..+| ...|-.
T Consensus 214 V-d~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~-~~~i~~~d~~t~~~~~~~~~p--~~~H~~ 289 (386)
T PF14583_consen 214 V-DQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQ-DFWIAGYDPDTGERRRLMEMP--WCSHFM 289 (386)
T ss_dssp S-S-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT---EEEEEE-TTT--EEEEEEE---SEEEEE
T ss_pred e-ceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCC-ceEEEeeCCCCCCceEEEeCC--ceeeeE
Confidence 0 237888888766666554 34444455655666665444433322222 456888999988644454444 456667
Q ss_pred EEECCEEEEEcCccCCCC----------CCCeEEEEECCCCcEEE
Q psy2979 339 AVIDGKIYVLGGEEGWDG----------YHDSIECYDVDNDSWEI 373 (400)
Q Consensus 339 ~~~~~~lyv~GG~~~~~~----------~~~~v~~yd~~~~~W~~ 373 (400)
...+|++++--|.+.... ...-++.++++++.-..
T Consensus 290 ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~ 334 (386)
T PF14583_consen 290 SSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK 334 (386)
T ss_dssp E-TTSSEEEEEE-------------------EEEEEETTTTEEEE
T ss_pred EcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee
Confidence 777899888655421111 11246667887765443
No 111
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.24 E-value=2 Score=38.83 Aligned_cols=228 Identities=17% Similarity=0.136 Sum_probs=105.9
Q ss_pred CcccceEEEEEcCCCceEEccCCcc-cce-----eeeEEE-ECCeEEEEE--eecCEEEEEECCCCCeEEccCCC-----
Q psy2979 121 KVVLRSVEGFCVKTKVWKTLSCLPF-AIS-----KHGLVV-SGRNTIYCL--DIVDIVYVAASMHKILHSLGSLK----- 186 (400)
Q Consensus 121 ~~~~~~~~~yd~~~~~w~~~~~~~~-~~~-----~~~~~~-~~~~~iyv~--~~~~~~~~yd~~~~~w~~~~~~~----- 186 (400)
+....-++.||..+-.-..=-.+|. +|. .+..+. -+++.+|+. ....++-..|...++....-+.|
T Consensus 63 G~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~i 142 (342)
T PF06433_consen 63 GERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLI 142 (342)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEE
T ss_pred ccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEE
Confidence 4455678899999875321112222 132 122333 366657777 55667888899888765433322
Q ss_pred --CcceeeeEEEECCEEEEEc-ccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEE--cCccccCCCC
Q psy2979 187 --FDFDVSGIAMLDGFVYAVG-GWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVT--GGAILEDGDG 261 (400)
Q Consensus 187 --~~r~~~~~~~~~~~iyv~G-G~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~--GG~~~~~~~~ 261 (400)
.+-..|++.+-+|.+..+. +.++.........|++..+-.-.-+.....-.......++|++|-+ +|..
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~------ 216 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS------ 216 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS------
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc------
Confidence 1112233333344443331 1122222333456777665221111111111122335678888874 3321
Q ss_pred cceEEEEeCCC-----CceeeccCCCCCceeee-EEEE--CCeEEEEcC--cCC-CCCCCCeEEEEECCCCeEEEccCCc
Q psy2979 262 IEQVQRYNPKV-----NQWQDLAPMLIPRSGAA-ICAL--DSCIYVLGG--WHA-STENTNRVECYHIAENTWEYKSPMK 330 (400)
Q Consensus 262 ~~~v~~yd~~~-----~~W~~~~~~~~~r~~~~-~~~~--~~~iyv~GG--~~~-~~~~~~~v~~yd~~~~~W~~~~~~~ 330 (400)
..-...+...+ ..|..-. .. ++.. .++||+.-- ..+ .......||.||+++++=..--+++
T Consensus 217 ~~~~~~~~~~t~~e~~~~WrPGG--------~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~ 288 (342)
T PF06433_consen 217 AKFGKPWSLLTDAEKADGWRPGG--------WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE 288 (342)
T ss_dssp EEEEEEEESS-HHHHHTTEEE-S--------SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE
T ss_pred ccccCcccccCccccccCcCCcc--------eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC
Confidence 11122232222 3455432 22 2222 678888742 111 1111568999999999743222222
Q ss_pred CccCcceEEEE-CC--EEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 331 EKRYRPGIAVI-DG--KIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 331 ~~~~~~~~~~~-~~--~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+ .-++.+- ++ .||.+-+. ...+.+||..+++
T Consensus 289 ~~--~~Si~Vsqd~~P~L~~~~~~------~~~l~v~D~~tGk 323 (342)
T PF06433_consen 289 HP--IDSIAVSQDDKPLLYALSAG------DGTLDVYDAATGK 323 (342)
T ss_dssp EE--ESEEEEESSSS-EEEEEETT------TTEEEEEETTT--
T ss_pred Cc--cceEEEccCCCcEEEEEcCC------CCeEEEEeCcCCc
Confidence 22 2133333 33 46655332 2579999999984
No 112
>smart00284 OLF Olfactomedin-like domains.
Probab=95.21 E-value=1.9 Score=37.49 Aligned_cols=183 Identities=17% Similarity=0.139 Sum_probs=105.2
Q ss_pred cEEEEEeccCCCcccceEEEEE----cCCCceEEccCCcccceeeeEEEECCeEEEEE-eecCEEEEEECCCCCeEEccC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFC----VKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL-DIVDIVYVAASMHKILHSLGS 184 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd----~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~ 184 (400)
+.+++..+.. ...+.+..|. ...+++.+.-.||.+..+.+.++.+|. +|.- ..+..+..||..+++-.....
T Consensus 35 ~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngs-lYY~~~~s~~iiKydL~t~~v~~~~~ 111 (255)
T smart00284 35 SLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGS-LYFNKFNSHDICRFDLTTETYQKEPL 111 (255)
T ss_pred ceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECce-EEEEecCCccEEEEECCCCcEEEEEe
Confidence 6788876542 1223444443 333444333356777888889999999 8887 455789999999988754444
Q ss_pred CCCc----c--------eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCC----CceEEccCCCCcccccEEEEeCCEE
Q psy2979 185 LKFD----F--------DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTK----NEWSYIEPMKLAVTSPAVVAHEGML 248 (400)
Q Consensus 185 ~~~~----r--------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~~l~~~~~~~~~~~~~~~i 248 (400)
+|.+ + ...-+++-++-|+|+=........--+.+.||.+ ++|.. +.+....+.+. .+=|.+
T Consensus 112 Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa~naF-mvCGvL 188 (255)
T smart00284 112 LNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNKRSASNAF-MICGIL 188 (255)
T ss_pred cCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCcccccccE-EEeeEE
Confidence 4432 1 1223455566777774443332223345667764 35654 34444433333 334588
Q ss_pred EEEcCccccCCCCcceEEEEeCCCCceeecc-CCCCCceeeeEEEE---CCeEEEEc
Q psy2979 249 YVTGGAILEDGDGIEQVQRYNPKVNQWQDLA-PMLIPRSGAAICAL---DSCIYVLG 301 (400)
Q Consensus 249 yv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~---~~~iyv~G 301 (400)
|++-.. ......-.+.||+.+++=..+. +++.+...+++..+ +.+||+..
T Consensus 189 Y~~~s~---~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 189 YVTRSL---GSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred EEEccC---CCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe
Confidence 988532 1111345788999887644332 34444445555555 56777765
No 113
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.09 E-value=2.1 Score=37.30 Aligned_cols=194 Identities=12% Similarity=0.085 Sum_probs=102.5
Q ss_pred eEEEEEcCCCceEEccCC-cccceeeeEEEE--CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEE
Q psy2979 126 SVEGFCVKTKVWKTLSCL-PFAISKHGLVVS--GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVY 202 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~-~~~~~~~~~~~~--~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iy 202 (400)
.+..+|+++...++.+-. ..+-..--.++. .+. +++......-=..||.++.-+..+.+.-+--+-.++.-++.+|
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvw 203 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVW 203 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEE
Confidence 677888888776655411 111111112222 223 4444222222256777776555554432223333444588888
Q ss_pred EEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc---EEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc
Q psy2979 203 AVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP---AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA 279 (400)
Q Consensus 203 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~---~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~ 279 (400)
+..=. -+-+-+.||.+..=+.++. |.....- .-+.--+.+.+.--. ..++.+|||.+.+|.+-+
T Consensus 204 yasla-----gnaiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~wittwg-------~g~l~rfdPs~~sW~eyp 270 (353)
T COG4257 204 YASLA-----GNAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWITTWG-------TGSLHRFDPSVTSWIEYP 270 (353)
T ss_pred EEecc-----ccceEEcccccCCcceecC-CCcccccccccccCccCcEEEeccC-------CceeeEeCcccccceeee
Confidence 76211 1446677887774444432 3221111 111123556665211 347999999999999874
Q ss_pred -CCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEEC
Q psy2979 280 -PMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVID 342 (400)
Q Consensus 280 -~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 342 (400)
|-..+|-...-+--.+++++.--. .+.+.+|||++.+.+.++ .+|-..+...++
T Consensus 271 LPgs~arpys~rVD~~grVW~sea~------agai~rfdpeta~ftv~p---~pr~n~gn~ql~ 325 (353)
T COG4257 271 LPGSKARPYSMRVDRHGRVWLSEAD------AGAIGRFDPETARFTVLP---IPRPNSGNIQLD 325 (353)
T ss_pred CCCCCCCcceeeeccCCcEEeeccc------cCceeecCcccceEEEec---CCCCCCCceecc
Confidence 222444443334446677774322 678999999999988764 344444444443
No 114
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.07 E-value=6 Score=42.47 Aligned_cols=196 Identities=12% Similarity=0.145 Sum_probs=108.6
Q ss_pred eeEEEE--CCeEEEEEee-cCEEEEEECCCCCeEEccCC-------CC--------cceeeeEEEE--CCEEEEEcccCC
Q psy2979 150 HGLVVS--GRNTIYCLDI-VDIVYVAASMHKILHSLGSL-------KF--------DFDVSGIAML--DGFVYAVGGWDG 209 (400)
Q Consensus 150 ~~~~~~--~~~~iyv~~~-~~~~~~yd~~~~~w~~~~~~-------~~--------~r~~~~~~~~--~~~iyv~GG~~~ 209 (400)
+++++. ++. ||+.+. .+.+..+|+.++.-..+..- .. -..-..++.- ++.+||....
T Consensus 627 ~GIavd~~gn~-LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-- 703 (1057)
T PLN02919 627 QGLAYNAKKNL-LYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-- 703 (1057)
T ss_pred cEEEEeCCCCE-EEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC--
Confidence 566665 345 888844 45688899877665544210 00 0011123332 5788887432
Q ss_pred CCCCCeEEEEeCCCCceEEccCC----------C--Cc-ccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 210 SCRLDSVERYDPTKNEWSYIEPM----------K--LA-VTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 210 ~~~~~~v~~yd~~~~~W~~~~~l----------~--~~-~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
...+++||+.++.......- + .. ..-.+++.. ++.|||.... .+.+.+||+.+..
T Consensus 704 ---~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-------n~~Irv~D~~tg~ 773 (1057)
T PLN02919 704 ---QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-------SSSIRALDLKTGG 773 (1057)
T ss_pred ---CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-------CCeEEEEECCCCc
Confidence 25688888877755433210 0 00 011123332 3459998665 3589999988765
Q ss_pred eeecc---C-CCC--------------C--ceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcC--
Q psy2979 275 WQDLA---P-MLI--------------P--RSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKE-- 331 (400)
Q Consensus 275 W~~~~---~-~~~--------------~--r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-- 331 (400)
.+.+. + .+. . ..-.+++. -+|.+|+.... ...|.+||+.++....+.....
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rIrviD~~tg~v~tiaG~G~~G 847 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKIKKLDPATKRVTTLAGTGKAG 847 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------CCEEEEEECCCCeEEEEeccCCcC
Confidence 33221 0 000 0 00122222 36789998765 5689999999988776543211
Q ss_pred ---------ccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 332 ---------KRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 332 ---------~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
....+..+++ +|++||.-.. .+.|.++|+.+++
T Consensus 848 ~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~------Nn~Irvid~~~~~ 891 (1057)
T PLN02919 848 FKDGKALKAQLSEPAGLALGENGRLFVADTN------NSLIRYLDLNKGE 891 (1057)
T ss_pred CCCCcccccccCCceEEEEeCCCCEEEEECC------CCEEEEEECCCCc
Confidence 1112333333 6889998654 3578899998875
No 115
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.94 E-value=1.9 Score=36.07 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=76.5
Q ss_pred eEEEECCeEEEEEeecCEEEEEECCCCC--eEEc----cCCCCcceeeeEEEEC-CEEEEEcccCCCCCCCeEEEEeCCC
Q psy2979 151 GLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSL----GSLKFDFDVSGIAMLD-GFVYAVGGWDGSCRLDSVERYDPTK 223 (400)
Q Consensus 151 ~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~----~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~ 223 (400)
++....+. +|++.. +.+|.++..... -..+ +.+|. .-..+....+ +++|++-| +..++|+..+
T Consensus 11 A~~~~~g~-~y~FkG-~~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg-------~~yw~~~~~~ 80 (194)
T cd00094 11 AVTTLRGE-LYFFKG-RYFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG-------DKYWVYTGKN 80 (194)
T ss_pred eEEEeCCE-EEEEeC-CEEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC-------CEEEEEcCcc
Confidence 34444566 888743 467777764211 1111 11221 1222222223 89999977 5678887664
Q ss_pred CceEE---cc--CCCC--cccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC-------CCCCceee
Q psy2979 224 NEWSY---IE--PMKL--AVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP-------MLIPRSGA 288 (400)
Q Consensus 224 ~~W~~---~~--~l~~--~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~-------~~~~r~~~ 288 (400)
..+.. +. .++. ..-..+...- ++++|++.|. ..++||..+++...--| +..+...-
T Consensus 81 ~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~---------~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~id 151 (194)
T cd00094 81 LEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD---------KYWRYDEKTQKMDPGYPKLIETDFPGVPDKVD 151 (194)
T ss_pred cccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC---------EEEEEeCCCccccCCCCcchhhcCCCcCCCcc
Confidence 22211 11 1221 1112222222 6899999887 68999876665421100 01122222
Q ss_pred eEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 289 AICAL-DSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 289 ~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
++... ++++|++-|. .+++||..+++
T Consensus 152 aa~~~~~~~~yfF~g~--------~y~~~d~~~~~ 178 (194)
T cd00094 152 AAFRWLDGYYYFFKGD--------QYWRFDPRSKE 178 (194)
T ss_pred eeEEeCCCcEEEEECC--------EEEEEeCccce
Confidence 33334 4899999874 89999998776
No 116
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.92 E-value=4 Score=39.73 Aligned_cols=249 Identities=10% Similarity=0.077 Sum_probs=123.6
Q ss_pred ceEEEEEcCCCc--eEEccCCcc-c--ceeeeEEEECCeEEEEEe---------ecCEEEEEECCCCC--eEEccCCC--
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPF-A--ISKHGLVVSGRNTIYCLD---------IVDIVYVAASMHKI--LHSLGSLK-- 186 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~-~--~~~~~~~~~~~~~iyv~~---------~~~~~~~yd~~~~~--w~~~~~~~-- 186 (400)
..+..+|..+++ |+.-...+. . ....+.++.++. +|+.. ....++.+|..+++ |+.-...+
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~ 198 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKL-VIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDP 198 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCE-EEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCc
Confidence 478889998875 775322111 0 012233445555 66542 13568899998765 76432111
Q ss_pred --Ccce--------------eeeEEE--ECCEEEEEcccC------------CCCCCCeEEEEeCCCC--ceEEccCCCC
Q psy2979 187 --FDFD--------------VSGIAM--LDGFVYAVGGWD------------GSCRLDSVERYDPTKN--EWSYIEPMKL 234 (400)
Q Consensus 187 --~~r~--------------~~~~~~--~~~~iyv~GG~~------------~~~~~~~v~~yd~~~~--~W~~~~~l~~ 234 (400)
.+.. ..+.+. .++.+|+-.|.. .......+..+|..++ .|+.-...+.
T Consensus 199 ~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~ 278 (488)
T cd00216 199 NAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHD 278 (488)
T ss_pred CCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCC
Confidence 1100 011122 246777764421 0112347899999887 5875322110
Q ss_pred c---cc--ccEEEE---eCCE---EEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCCCceeeeEEEECCeEEEEc
Q psy2979 235 A---VT--SPAVVA---HEGM---LYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIPRSGAAICALDSCIYVLG 301 (400)
Q Consensus 235 ~---~~--~~~~~~---~~~~---iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~G 301 (400)
. +. ...+.. .++. +.++|.. + ..++.+|..+.+ |+.-.. ...++.-.+.+|+-.
T Consensus 279 ~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~---~----G~l~ald~~tG~~~W~~~~~------~~~~~~~~~~vyv~~ 345 (488)
T cd00216 279 LWDYDGPNQPSLADIKPKDGKPVPAIVHAPK---N----GFFYVLDRTTGKLISARPEV------EQPMAYDPGLVYLGA 345 (488)
T ss_pred CcccccCCCCeEEeccccCCCeeEEEEEECC---C----ceEEEEECCCCcEeeEeEee------ccccccCCceEEEcc
Confidence 0 11 111111 2332 3334444 2 368999988776 875321 011112226666643
Q ss_pred CcCC------------CCCCCCeEEEEECCCCe--EEEccCC-c------CccCcceEEEECCEEEEEcCccCCCCCCCe
Q psy2979 302 GWHA------------STENTNRVECYHIAENT--WEYKSPM-K------EKRYRPGIAVIDGKIYVLGGEEGWDGYHDS 360 (400)
Q Consensus 302 G~~~------------~~~~~~~v~~yd~~~~~--W~~~~~~-~------~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~ 360 (400)
.... ... ...+..+|..+++ |+.-... . .+......++.++.||+.. . + ..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~-~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~-~-d-----G~ 417 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPG-KGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGA-A-D-----GY 417 (488)
T ss_pred ccccccCcccccCCCCCCC-ceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEEC-C-C-----Ce
Confidence 2110 111 3578899988774 8764320 0 1112223445566666644 3 2 46
Q ss_pred EEEEECCCCc--EEEecCCCCCCCceeeE-EEcccccccc
Q psy2979 361 IECYDVDNDS--WEIMSHLPSARSWLGCV-PLQIHKSQFV 397 (400)
Q Consensus 361 v~~yd~~~~~--W~~~~~~~~~r~~~~~~-~~~~~~~~~~ 397 (400)
++.+|.++++ |+. +++.+....-++ ..++++|+..
T Consensus 418 l~ald~~tG~~lW~~--~~~~~~~a~P~~~~~~g~~yv~~ 455 (488)
T cd00216 418 FRAFDATTGKELWKF--RTPSGIQATPMTYEVNGKQYVGV 455 (488)
T ss_pred EEEEECCCCceeeEE--ECCCCceEcCEEEEeCCEEEEEE
Confidence 8999998875 774 344444333332 4466666543
No 117
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.85 E-value=2.8 Score=37.65 Aligned_cols=235 Identities=14% Similarity=0.197 Sum_probs=103.9
Q ss_pred CceEEccC-Cccc--ceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccC-CCCcceeeeEEEE-CCEEEEEcccCC
Q psy2979 135 KVWKTLSC-LPFA--ISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGS-LKFDFDVSGIAML-DGFVYAVGGWDG 209 (400)
Q Consensus 135 ~~w~~~~~-~~~~--~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~-~~~~r~~~~~~~~-~~~iyv~GG~~~ 209 (400)
..|..... .+.+ ....++...++. .|++....-++.-.-.-.+|++++- .+.|-..+.+..+ ++.++++|..
T Consensus 47 ~tW~~~~~~~~~~~~~~l~~I~f~~~~-g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-- 123 (302)
T PF14870_consen 47 KTWQPVSLDLDNPFDYHLNSISFDGNE-GWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-- 123 (302)
T ss_dssp SS-EE-----S-----EEEEEEEETTE-EEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--
T ss_pred ccccccccCCCccceeeEEEEEecCCc-eEEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC--
Confidence 36887642 2222 223445556776 8887554555555556678999862 2334344444444 5567766542
Q ss_pred CCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeee
Q psy2979 210 SCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAA 289 (400)
Q Consensus 210 ~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~ 289 (400)
..+++=.-.-.+|+.+..-...-..-....-++.+++++.. | +-....|+....|+........|-...
T Consensus 124 ----G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~----G---~~~~s~~~G~~~w~~~~r~~~~riq~~ 192 (302)
T PF14870_consen 124 ----GAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR----G---NFYSSWDPGQTTWQPHNRNSSRRIQSM 192 (302)
T ss_dssp ------EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT----S---SEEEEE-TT-SS-EEEE--SSS-EEEE
T ss_pred ----CcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc----c---cEEEEecCCCccceEEccCccceehhc
Confidence 34565555566899875422221111222346676666544 2 234567898888998864434443333
Q ss_pred EEEECCeEEEEcCcCCCCCCCCeEEEEE--CCCCeEEEccCCcCccCcceE--EEE--CCEEEEEcCccCCCCCCCeEEE
Q psy2979 290 ICALDSCIYVLGGWHASTENTNRVECYH--IAENTWEYKSPMKEKRYRPGI--AVI--DGKIYVLGGEEGWDGYHDSIEC 363 (400)
Q Consensus 290 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd--~~~~~W~~~~~~~~~~~~~~~--~~~--~~~lyv~GG~~~~~~~~~~v~~ 363 (400)
...-++.+++++ . -..+..=+ -....|++-. .|.....++. .++ ++.+++.||. ..+++
T Consensus 193 gf~~~~~lw~~~-~------Gg~~~~s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~-------G~l~~ 257 (302)
T PF14870_consen 193 GFSPDGNLWMLA-R------GGQIQFSDDPDDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGS-------GTLLV 257 (302)
T ss_dssp EE-TTS-EEEEE-T------TTEEEEEE-TTEEEEE---B--TTSS--S-EEEEEESSSS-EEEEEST-------T-EEE
T ss_pred eecCCCCEEEEe-C------CcEEEEccCCCCcccccccc-CCcccCceeeEEEEecCCCCEEEEeCC-------ccEEE
Confidence 334467887775 2 12333333 2344677622 3333333332 233 6889999986 23444
Q ss_pred EECCCCcEEEecC-CCCCCCceeeEEEccccccccc
Q psy2979 364 YDVDNDSWEIMSH-LPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 364 yd~~~~~W~~~~~-~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
=.-..++|++.+. -+.+-....++.+++.+-+.+|
T Consensus 258 S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 258 STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred eCCCCccceECccccCCCCceEEEEEcCCCceEEEC
Confidence 4445568999864 3344445666666654444443
No 118
>PRK03629 tolB translocation protein TolB; Provisional
Probab=94.83 E-value=3.8 Score=39.10 Aligned_cols=148 Identities=10% Similarity=0.022 Sum_probs=79.7
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL 293 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 293 (400)
..++.+|+.+++-+.+...+.........--+.+|++.... ++ ...++.+|..+.+.+.+..-.... ......-
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~---~g--~~~I~~~d~~tg~~~~lt~~~~~~-~~~~wSP 296 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSK---TG--SLNLYVMDLASGQIRQVTDGRSNN-TEPTWFP 296 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcC---CC--CcEEEEEECCCCCEEEccCCCCCc-CceEECC
Confidence 56888999888777766554332222222223456655332 22 236999999888877765433211 1112222
Q ss_pred CCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCE-EEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 294 DSC-IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGK-IYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 294 ~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
+++ |+...... . ...++.+|+.++.-..+...... .......-+|+ |+..+.. .+ ...++.+|+.++.+
T Consensus 297 DG~~I~f~s~~~---g-~~~Iy~~d~~~g~~~~lt~~~~~-~~~~~~SpDG~~Ia~~~~~-~g---~~~I~~~dl~~g~~ 367 (429)
T PRK03629 297 DSQNLAYTSDQA---G-RPQVYKVNINGGAPQRITWEGSQ-NQDADVSSDGKFMVMVSSN-GG---QQHIAKQDLATGGV 367 (429)
T ss_pred CCCEEEEEeCCC---C-CceEEEEECCCCCeEEeecCCCC-ccCEEECCCCCEEEEEEcc-CC---CceEEEEECCCCCe
Confidence 454 44333221 1 34789999988776665422111 11111222444 4444432 22 34789999999988
Q ss_pred EEecC
Q psy2979 372 EIMSH 376 (400)
Q Consensus 372 ~~~~~ 376 (400)
+.+..
T Consensus 368 ~~Lt~ 372 (429)
T PRK03629 368 QVLTD 372 (429)
T ss_pred EEeCC
Confidence 87753
No 119
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.76 E-value=3.2 Score=37.89 Aligned_cols=240 Identities=10% Similarity=0.068 Sum_probs=110.6
Q ss_pred ceEEEEEcC-CCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCC-e-EEccCCCCcceeeeEEEE-C
Q psy2979 125 RSVEGFCVK-TKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKI-L-HSLGSLKFDFDVSGIAML-D 198 (400)
Q Consensus 125 ~~~~~yd~~-~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~-w-~~~~~~~~~r~~~~~~~~-~ 198 (400)
..+..|+.. .+++......+.+...+.++.. +++.+|+. ...+.+..|+..++. . ......+....-+.++.. +
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~ 136 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPD 136 (330)
T ss_pred CcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCC
Confidence 456667665 3456544433322222233333 44437766 335667778775321 1 112212221122333222 3
Q ss_pred -CEEEEEcccCCCCCCCeEEEEeCCCC-ceEEcc----CCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 199 -GFVYAVGGWDGSCRLDSVERYDPTKN-EWSYIE----PMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 199 -~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~----~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
+.+|+..- ..+.+..||..++ ...... ..+....-+.++.. +..+|+.... .+++..||.
T Consensus 137 g~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-------~~~v~v~~~ 204 (330)
T PRK11028 137 NRTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-------NSSVDVWQL 204 (330)
T ss_pred CCEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-------CCEEEEEEE
Confidence 46666532 2356888988763 222110 11211111223322 3467887543 246666665
Q ss_pred C--CCceee---ccCCC----CCceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEEC--CCCeEEEccCCcCccCcce
Q psy2979 271 K--VNQWQD---LAPML----IPRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHI--AENTWEYKSPMKEKRYRPG 337 (400)
Q Consensus 271 ~--~~~W~~---~~~~~----~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~~~~~~ 337 (400)
. +.+.+. +..+| .++....+... ++ .+|+.... .+.+..|+. .+..++.+...+.......
T Consensus 205 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~------~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~ 278 (330)
T PRK11028 205 KDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT------ASLISVFSVSEDGSVLSFEGHQPTETQPRG 278 (330)
T ss_pred eCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC------CCeEEEEEEeCCCCeEEEeEEEeccccCCc
Confidence 4 344433 33232 23332222222 34 57775322 345555554 4455655554443211112
Q ss_pred EEEE--CCEEEEEcCccCCCCCCCeEEEE--ECCCCcEEEecCCCCCCCceeeEE
Q psy2979 338 IAVI--DGKIYVLGGEEGWDGYHDSIECY--DVDNDSWEIMSHLPSARSWLGCVP 388 (400)
Q Consensus 338 ~~~~--~~~lyv~GG~~~~~~~~~~v~~y--d~~~~~W~~~~~~~~~r~~~~~~~ 388 (400)
+..- +..||+.... .+.|.+| |..++.++.+...+.+..-.++.+
T Consensus 279 ~~~~~dg~~l~va~~~------~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 279 FNIDHSGKYLIAAGQK------SHHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred eEECCCCCEEEEEEcc------CCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 2221 4567776543 2345555 667788888877666555455544
No 120
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.73 E-value=7.3 Score=41.84 Aligned_cols=195 Identities=13% Similarity=0.138 Sum_probs=105.8
Q ss_pred CCeEEEEE-eecCEEEEEECCCCCeEEccCCC----------Cc--ceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEe
Q psy2979 156 GRNTIYCL-DIVDIVYVAASMHKILHSLGSLK----------FD--FDVSGIAML--DGFVYAVGGWDGSCRLDSVERYD 220 (400)
Q Consensus 156 ~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~----------~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd 220 (400)
++. +|+. ...+.+..+|+....-..+.... .. ..-++++.. ++.|||.-..+ ..+.++|
T Consensus 579 ~g~-lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n-----~~Ir~id 652 (1057)
T PLN02919 579 NNR-LFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN-----HALREID 652 (1057)
T ss_pred CCe-EEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC-----ceEEEEe
Confidence 566 9988 55567899998754332333210 01 112344443 45788874322 4578888
Q ss_pred CCCCceEEccCC-------CC-------cccc-cEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCC--
Q psy2979 221 PTKNEWSYIEPM-------KL-------AVTS-PAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM-- 281 (400)
Q Consensus 221 ~~~~~W~~~~~l-------~~-------~~~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~-- 281 (400)
+.++.=+.+..- .. .... +.++.. ++.+||.... .+.++.||+.+........-
T Consensus 653 ~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-------~~~I~v~d~~~g~v~~~~G~G~ 725 (1057)
T PLN02919 653 FVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-------QHQIWEYNISDGVTRVFSGDGY 725 (1057)
T ss_pred cCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-------CCeEEEEECCCCeEEEEecCCc
Confidence 877654443210 00 0111 233332 6889998654 35789999877655433210
Q ss_pred --------C---CCceeeeEEEE-C-CeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc--C--CcC-------------
Q psy2979 282 --------L---IPRSGAAICAL-D-SCIYVLGGWHASTENTNRVECYHIAENTWEYKS--P--MKE------------- 331 (400)
Q Consensus 282 --------~---~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~--~--~~~------------- 331 (400)
. ....-.+++.. + +.||+.... .+.+.+||+.++....+. . .+.
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 0 00111223333 3 459998765 568999999876533221 0 000
Q ss_pred --ccCcc-eEEE-ECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 332 --KRYRP-GIAV-IDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 332 --~~~~~-~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
....+ +++. -+|.|||.... .+.|.+||+.++....+.
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs~------N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADSY------NHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEECC------CCEEEEEECCCCeEEEEe
Confidence 00111 2222 26789998654 357999999988777654
No 121
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.68 E-value=4 Score=38.63 Aligned_cols=183 Identities=10% Similarity=0.020 Sum_probs=94.0
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEEECC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeC
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAMLDG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE 245 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~ 245 (400)
..++.+|..+++...+..........+. .-++ .|++.....+ ...++.+|+.+++.+.+...+....... ..-+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~-spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~~~~~~-~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAF-SPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPGIDTEPS-WSPD 288 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEE-CCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCCCCCCCEE-ECCC
Confidence 5788899888776655543322222111 1243 5655433222 2568899999888777654332111111 1224
Q ss_pred C-EEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 246 G-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 246 ~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
+ .|++.... .+ ...++.+|..+..++.+..-... .......-+++.+++...... ...++.+|+.++.+.
T Consensus 289 g~~l~~~s~~---~g--~~~iy~~d~~~~~~~~l~~~~~~-~~~~~~spdg~~i~~~~~~~~---~~~i~~~d~~~~~~~ 359 (417)
T TIGR02800 289 GKSIAFTSDR---GG--SPQIYMMDADGGEVRRLTFRGGY-NASPSWSPDGDLIAFVHREGG---GFNIAVMDLDGGGER 359 (417)
T ss_pred CCEEEEEECC---CC--CceEEEEECCCCCEEEeecCCCC-ccCeEECCCCCEEEEEEccCC---ceEEEEEeCCCCCeE
Confidence 4 45554333 22 24799999988888766432211 111122335665555544321 357999999988777
Q ss_pred EccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 325 YKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
.+...... ..+ ....+++..++... .+. ...+++++...
T Consensus 360 ~l~~~~~~-~~p-~~spdg~~l~~~~~-~~~--~~~l~~~~~~g 398 (417)
T TIGR02800 360 VLTDTGLD-ESP-SFAPNGRMILYATT-RGG--RGVLGLVSTDG 398 (417)
T ss_pred EccCCCCC-CCc-eECCCCCEEEEEEe-CCC--cEEEEEEECCC
Confidence 76542211 111 22335544444333 211 24566666544
No 122
>KOG0783|consensus
Probab=94.62 E-value=0.015 Score=57.24 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=33.4
Q ss_pred eceEEEECCeEEehhhHHHhhcCcccccc--------ceeecCCCC--HH---HHHHHhh
Q psy2979 18 CDVTLCVDGSKFPAHRVVLAASSPYFKVL--------ETIRLPQLS--PY---FLHDCVE 64 (400)
Q Consensus 18 ~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m--------~~vrl~~l~--~~---~l~~~i~ 64 (400)
|||++. ||++|+||+.+|.|.++||..| ..|...+++ .+ .+++++|
T Consensus 713 ~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylY 771 (1267)
T KOG0783|consen 713 TVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLY 771 (1267)
T ss_pred EEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHH
Confidence 444444 8899999999999999999988 344444444 44 4566777
No 123
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.59 E-value=3.9 Score=38.11 Aligned_cols=225 Identities=15% Similarity=0.144 Sum_probs=116.2
Q ss_pred eEEEEEcCCCc--eEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCC--CeEEccCCCCcceeeeEEEECCEE
Q psy2979 126 SVEGFCVKTKV--WKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHK--ILHSLGSLKFDFDVSGIAMLDGFV 201 (400)
Q Consensus 126 ~~~~yd~~~~~--w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~--~w~~~~~~~~~r~~~~~~~~~~~i 201 (400)
.+..+|+.+.+ |......-...........++. ||+-.....++++|+.++ .|..-.+.. ++..-..+..++.+
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v 156 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS-PYYASPPVVGDGTV 156 (370)
T ss_pred cEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCC-eEEecCcEEcCcEE
Confidence 78899999887 8643221011112222333677 888865568999999654 477644432 34444455556777
Q ss_pred EEEcccCCCCCCCeEEEEeCCCC--ceEEccCC-CCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--ee
Q psy2979 202 YAVGGWDGSCRLDSVERYDPTKN--EWSYIEPM-KLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQ 276 (400)
Q Consensus 202 yv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l-~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~ 276 (400)
|+.. ....+.+.|..++ .|+.-.+. ...+.....+..++.+|+.... . ...++.+|+.+.+ |+
T Consensus 157 ~~~s------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~-----~-~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 157 YVGT------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG-----Y-DGILYALNAEDGTLKWS 224 (370)
T ss_pred EEec------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC-----C-cceEEEEEccCCcEeee
Confidence 7653 1246788888865 58754332 1222222333567777765331 0 1258889986655 87
Q ss_pred eccCCCCCceee--eEEEECCeEEEEcCcCCCCCCCCeEEEEECCCC--eEEEccCCcCccCcceEE---EECCEEEEEc
Q psy2979 277 DLAPMLIPRSGA--AICALDSCIYVLGGWHASTENTNRVECYHIAEN--TWEYKSPMKEKRYRPGIA---VIDGKIYVLG 349 (400)
Q Consensus 277 ~~~~~~~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~---~~~~~lyv~G 349 (400)
.-...+..+..- ......+.||+-|+.-.... ...+.++|..+. .|+.-.++.......-.+ .-+|++|+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~-~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~ 303 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSY-GGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGF 303 (370)
T ss_pred eeeecccCcccccccccccCceEEECCcEEEEec-CCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEE
Confidence 532222221111 12223344444443111111 345888887765 487755422222221111 1378888865
Q ss_pred CccCCCCCCCeEEEEEC
Q psy2979 350 GEEGWDGYHDSIECYDV 366 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~ 366 (400)
.. ........+++++.
T Consensus 304 ~~-~~~~~~~~~~~~~~ 319 (370)
T COG1520 304 TD-NDGRGSGSLYALAD 319 (370)
T ss_pred ec-cccccccceEEEec
Confidence 43 21113455667765
No 124
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.46 E-value=5.2 Score=38.95 Aligned_cols=236 Identities=11% Similarity=0.073 Sum_probs=119.4
Q ss_pred ceEEEEEcCCCc--eEEccCCcccc-----eeeeEEEEC-CeEEEEEeecCEEEEEECCCCC--eEEccCCCC-cc--ee
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFAI-----SKHGLVVSG-RNTIYCLDIVDIVYVAASMHKI--LHSLGSLKF-DF--DV 191 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~~-----~~~~~~~~~-~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~-~r--~~ 191 (400)
..+..+|+.+++ |..-...+... ....+++.+ +. +|+......++.+|..+++ |+.-..... .. ..
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~-V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ 149 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRK-VFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMT 149 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCe-EEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEec
Confidence 478888988875 87532222000 112234445 66 8887667789999998765 775443221 11 12
Q ss_pred eeEEEECCEEEEEcccCCC----CCCCeEEEEeCCCC--ceEEccCCC----Cccc--------------ccEEEE--eC
Q psy2979 192 SGIAMLDGFVYAVGGWDGS----CRLDSVERYDPTKN--EWSYIEPMK----LAVT--------------SPAVVA--HE 245 (400)
Q Consensus 192 ~~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~~~--~W~~~~~l~----~~~~--------------~~~~~~--~~ 245 (400)
.+.++.++.+|+ |..... .....+..+|..++ .|+.-...+ .+.. ..+.++ .+
T Consensus 150 ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~ 228 (488)
T cd00216 150 GAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT 228 (488)
T ss_pred CCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC
Confidence 233445666665 432211 12357899999877 486532111 1100 011222 25
Q ss_pred CEEEEEcCccccC--------CCC--cceEEEEeCCCCc--eeeccCCCC---Cceee--eEE---EECCe---EEEEcC
Q psy2979 246 GMLYVTGGAILED--------GDG--IEQVQRYNPKVNQ--WQDLAPMLI---PRSGA--AIC---ALDSC---IYVLGG 302 (400)
Q Consensus 246 ~~iyv~GG~~~~~--------~~~--~~~v~~yd~~~~~--W~~~~~~~~---~r~~~--~~~---~~~~~---iyv~GG 302 (400)
+.+|+-.+...+. +.. .+.++.+|..+.+ |+.-...+. -+... .+. ..++. +.++|.
T Consensus 229 g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~ 308 (488)
T cd00216 229 NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP 308 (488)
T ss_pred CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEEC
Confidence 7777765431000 011 4579999998765 875321110 01111 111 12332 344444
Q ss_pred cCCCCCCCCeEEEEECCCCe--EEEccCCcCccCcceEEEECCEEEEEcCccC-----------CCCCCCeEEEEECCCC
Q psy2979 303 WHASTENTNRVECYHIAENT--WEYKSPMKEKRYRPGIAVIDGKIYVLGGEEG-----------WDGYHDSIECYDVDND 369 (400)
Q Consensus 303 ~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~-----------~~~~~~~v~~yd~~~~ 369 (400)
. ...++.+|.++++ |+.-.. ......-.+.+|+-..... .......+..+|..++
T Consensus 309 ~------~G~l~ald~~tG~~~W~~~~~------~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 309 K------NGFFYVLDRTTGKLISARPEV------EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred C------CceEEEEECCCCcEeeEeEee------ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 3 4579999998886 865321 0111112266777432100 0122457899999887
Q ss_pred c--EEEe
Q psy2979 370 S--WEIM 374 (400)
Q Consensus 370 ~--W~~~ 374 (400)
+ |+.-
T Consensus 377 ~~~W~~~ 383 (488)
T cd00216 377 KVVWEKR 383 (488)
T ss_pred cEeeEee
Confidence 4 7764
No 125
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=94.41 E-value=4.3 Score=37.82 Aligned_cols=260 Identities=15% Similarity=0.102 Sum_probs=125.1
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCce-EEccCCcccceeeeEEE-E-CCeEEEEEeecCEEEEEECCCCCeEEccCCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVW-KTLSCLPFAISKHGLVV-S-GRNTIYCLDIVDIVYVAASMHKILHSLGSLK 186 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w-~~~~~~~~~~~~~~~~~-~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~ 186 (400)
+++++.- ....++.+.|..+.+- .+++. ....|.... . ++..+|+......+-.+|+.+++ .+...+
T Consensus 6 ~l~~V~~-----~~~~~v~viD~~t~~~~~~i~~---~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~ 75 (369)
T PF02239_consen 6 NLFYVVE-----RGSGSVAVIDGATNKVVARIPT---GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIK 75 (369)
T ss_dssp GEEEEEE-----GGGTEEEEEETTT-SEEEEEE----STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE
T ss_pred cEEEEEe-----cCCCEEEEEECCCCeEEEEEcC---CCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEe
Confidence 5666653 2335788888887663 23332 222244333 2 34448888666789999999887 333344
Q ss_pred CcceeeeEEEE-CC-EEEEEcccCCCCCCCeEEEEeCCCCceEE-cc--CCC----CcccccEEEEeCCEEEEEcCcccc
Q psy2979 187 FDFDVSGIAML-DG-FVYAVGGWDGSCRLDSVERYDPTKNEWSY-IE--PMK----LAVTSPAVVAHEGMLYVTGGAILE 257 (400)
Q Consensus 187 ~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~--~l~----~~~~~~~~~~~~~~iyv~GG~~~~ 257 (400)
......+++.. ++ .+|+ +.+. .+++..+|..+.+=.. ++ .++ .+|...-.+...+.-|++.-.
T Consensus 76 ~G~~~~~i~~s~DG~~~~v-~n~~----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk--- 147 (369)
T PF02239_consen 76 VGGNPRGIAVSPDGKYVYV-ANYE----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK--- 147 (369)
T ss_dssp -SSEEEEEEE--TTTEEEE-EEEE----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET---
T ss_pred cCCCcceEEEcCCCCEEEE-EecC----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc---
Confidence 44444444433 44 4544 3322 2468888987754222 22 122 223222223345555665433
Q ss_pred CCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEc---cCCcCcc
Q psy2979 258 DGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYK---SPMKEKR 333 (400)
Q Consensus 258 ~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~~ 333 (400)
+ ...++..|.....=.....+...+..|....- +++.|+.+-. . .+.+...|.++++-..+ +.-|.+.
T Consensus 148 d---~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~-~----sn~i~viD~~~~k~v~~i~~g~~p~~~ 219 (369)
T PF02239_consen 148 D---TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN-G----SNKIAVIDTKTGKLVALIDTGKKPHPG 219 (369)
T ss_dssp T---TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG-G----GTEEEEEETTTTEEEEEEE-SSSBEET
T ss_pred c---CCeEEEEEeccccccceeeecccccccccccCcccceeeeccc-c----cceeEEEeeccceEEEEeecccccccc
Confidence 2 34788888765432222233344555555444 4454444422 2 56899999988864432 1222222
Q ss_pred CcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECC----CCcEEEecCCCCCCCceeeEEEccccccccc
Q psy2979 334 YRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVD----NDSWEIMSHLPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 334 ~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~----~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
....+... .|-++..+|. ... .-...--|+. ...|+.+..++..-..+.+.+..+..++++|
T Consensus 220 ~~~~~php~~g~vw~~~~~-~~~--~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd 286 (369)
T PF02239_consen 220 PGANFPHPGFGPVWATSGL-GYF--AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVD 286 (369)
T ss_dssp TEEEEEETTTEEEEEEEBS-SSS--EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE
T ss_pred ccccccCCCcceEEeeccc-cce--ecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEee
Confidence 22222222 2445555554 111 1122233443 3679998887776666777778888888776
No 126
>KOG3545|consensus
Probab=94.17 E-value=3.3 Score=35.52 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=107.5
Q ss_pred EEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeC----CCCceEEccCCCCcccccEEEE
Q psy2979 168 IVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDP----TKNEWSYIEPMKLAVTSPAVVA 243 (400)
Q Consensus 168 ~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~----~~~~W~~~~~l~~~~~~~~~~~ 243 (400)
.+....+..+.|.+-+..+ ++++|+..+..+ ..+.-|.. ..+.|...=.+|.+-.+.+-++
T Consensus 11 ~~~~~~~~~GsWmrDpl~~-----------~~r~~~~~~~~~----~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VV 75 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMRDPLPA-----------DDRIYVMNYFDG----LMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVV 75 (249)
T ss_pred EEEeeccccceeecCCCcc-----------cCceEEeccccC----ceEEEeccHHHhhccCcceEEeCCCCccccceEE
Confidence 3445566668887654322 577888844332 23444433 3445666667888888888899
Q ss_pred eCCEEEEEcCccccCCCCcceEEEEeCCCCc---eeeccCCCC---------CceeeeEEEECCeEEEEcCcCCCCCCCC
Q psy2979 244 HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ---WQDLAPMLI---------PRSGAAICALDSCIYVLGGWHASTENTN 311 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~---------~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 311 (400)
.+|.+|.-.+. ...+.+||..+.. |..++.+.. +....-.++-++-++++=-..+... .-
T Consensus 76 ynGs~yynk~~-------t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g-~i 147 (249)
T KOG3545|consen 76 YNGSLYYNKAG-------TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAG-TI 147 (249)
T ss_pred EcceEEeeccC-------CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCC-cE
Confidence 99999987655 5678999987743 555543211 1122334455556666654443333 33
Q ss_pred eEEEEECCC----CeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeE-EEEECCCCcEEEecCCCCC
Q psy2979 312 RVECYHIAE----NTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSI-ECYDVDNDSWEIMSHLPSA 380 (400)
Q Consensus 312 ~v~~yd~~~----~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v-~~yd~~~~~W~~~~~~~~~ 380 (400)
.+.+.||.+ ++|..-- ..+....+.++-|-+|++-.. . .....| +.||..+++=+. .++|.+
T Consensus 148 v~skLdp~tl~~e~tW~T~~---~k~~~~~aF~iCGvLY~v~S~-~--~~~~~i~yaydt~~~~~~~-~~ipf~ 214 (249)
T KOG3545|consen 148 VLSKLDPETLEVERTWNTTL---PKRSAGNAFMICGVLYVVHSY-N--CTHTQISYAYDTTTGTQER-IDLPFP 214 (249)
T ss_pred EeeccCHHHhheeeeecccc---CCCCcCceEEEeeeeEEEecc-c--cCCceEEEEEEcCCCceec-cccccc
Confidence 347788843 3463211 123444567778899998655 2 222334 789999887644 344543
No 127
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=93.77 E-value=0.0038 Score=46.27 Aligned_cols=63 Identities=33% Similarity=0.547 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHhcCceeceE-------EEECCeEEehhhHHHhhcCcccc------------ccceeecCCCCHHHHHHH
Q psy2979 2 KMVLTGFNEARKNNEFCDVT-------LCVDGSKFPAHRVVLAASSPYFK------------VLETIRLPQLSPYFLHDC 62 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~-------l~~~~~~~~~hr~vLaa~s~yf~------------~m~~vrl~~l~~~~l~~~ 62 (400)
++|..+|.++.+++.|..+. |..++..+..+..|+.++..|.+ .|++|||+.|++++|.+.
T Consensus 22 ~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~~~~~~Ll~~iR~~~l~~~~L~~~ 101 (103)
T PF07707_consen 22 RFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENREEHLKELLSCIRFPLLSPEELQNV 101 (103)
T ss_dssp HHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHHTTTHHHHHCCCHHHCT-HHHHHHC
T ss_pred HHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCCcccCCHHHHHHH
Confidence 46888999999999998875 45566667778888888777763 578999999999999886
Q ss_pred hh
Q psy2979 63 VE 64 (400)
Q Consensus 63 i~ 64 (400)
++
T Consensus 102 v~ 103 (103)
T PF07707_consen 102 VE 103 (103)
T ss_dssp CT
T ss_pred HC
Confidence 53
No 128
>PRK02889 tolB translocation protein TolB; Provisional
Probab=93.56 E-value=7.1 Score=37.27 Aligned_cols=188 Identities=13% Similarity=0.038 Sum_probs=92.0
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEEECC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeC
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAMLDG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE 245 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~ 245 (400)
..++..|........+..-..+-.... ..-++ .|+... .. .....++.+|+.+++=..+...+.... .....-+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~-wSPDG~~la~~s-~~--~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPD 250 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPA-WSPDGTKLAYVS-FE--SKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPD 250 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccce-EcCCCCEEEEEE-cc--CCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCC
Confidence 468888875544343322111111111 11244 444332 21 123568999998887666554442221 1222224
Q ss_pred C-EEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCe-EEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 246 G-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSC-IYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 246 ~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+ +|++.... ++ ...++.+|..+...+.+..-... .......-+|+ |+..+.. . . ...++.++..++..
T Consensus 251 G~~la~~~~~---~g--~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wSpDG~~l~f~s~~-~--g-~~~Iy~~~~~~g~~ 320 (427)
T PRK02889 251 GRTLAVALSR---DG--NSQIYTVNADGSGLRRLTQSSGI-DTEPFFSPDGRSIYFTSDR-G--G-APQIYRMPASGGAA 320 (427)
T ss_pred CCEEEEEEcc---CC--CceEEEEECCCCCcEECCCCCCC-CcCeEEcCCCCEEEEEecC-C--C-CcEEEEEECCCCce
Confidence 4 55554333 33 35789999887776666432211 11122233554 4443321 1 1 34788888887777
Q ss_pred EEccCCcCccCcce-EEEECC-EEEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 324 EYKSPMKEKRYRPG-IAVIDG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 324 ~~~~~~~~~~~~~~-~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
+.+.... ..... ...-+| .|+..... .+ ...++++|..+++.+.+.
T Consensus 321 ~~lt~~g--~~~~~~~~SpDG~~Ia~~s~~-~g---~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 321 QRVTFTG--SYNTSPRISPDGKLLAYISRV-GG---AFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEecCC--CCcCceEECCCCCEEEEEEcc-CC---cEEEEEEECCCCCeEEcc
Confidence 6654211 11111 122244 45444332 21 247899999888777663
No 129
>PTZ00421 coronin; Provisional
Probab=93.39 E-value=8.3 Score=37.54 Aligned_cols=153 Identities=15% Similarity=0.187 Sum_probs=73.6
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEE-ccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCcee
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSY-IEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 276 (400)
+.+++.||.+ ..+..||..+++-.. +...... -.+++ ..++.+++.|+. |+ .+..||+.+.+-.
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~~l~~h~~~--V~sla~spdG~lLatgs~---Dg----~IrIwD~rsg~~v 203 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVEVIKCHSDQ--ITSLEWNLDGSLLCTTSK---DK----KLNIIDPRDGTIV 203 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEEEEcCCCCc--eEEEEEECCCCEEEEecC---CC----EEEEEECCCCcEE
Confidence 3567777765 458889988764321 1111111 11122 236778888887 54 7889999876521
Q ss_pred -eccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE--EEccCCcCccCcceEEEE--CCEEEEEcCc
Q psy2979 277 -DLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW--EYKSPMKEKRYRPGIAVI--DGKIYVLGGE 351 (400)
Q Consensus 277 -~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~~~~~~~~~~--~~~lyv~GG~ 351 (400)
.+..-...+........++..++..|.+... ...+..||+.+..- ... .... ........+ ++.++++||.
T Consensus 204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~--Dr~VklWDlr~~~~p~~~~-~~d~-~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 204 SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ--QRQIMLWDTRKMASPYSTV-DLDQ-SSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred EEEecCCCCcceEEEEcCCCCeEEEEecCCCC--CCeEEEEeCCCCCCceeEe-ccCC-CCceEEEEEcCCCCEEEEEEe
Confidence 1211111111111122233444444443221 35788899865331 111 0110 011112223 4555556653
Q ss_pred cCCCCCCCeEEEEECCCCcEEEe
Q psy2979 352 EGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
+ ...|.+||..++.....
T Consensus 280 -g----Dg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 280 -G----EGNIRCFELMNERLTFC 297 (493)
T ss_pred -C----CCeEEEEEeeCCceEEE
Confidence 1 13578888887765544
No 130
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=93.39 E-value=1.4 Score=34.11 Aligned_cols=83 Identities=10% Similarity=0.197 Sum_probs=57.4
Q ss_pred EEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCC---cCccCcceEEEECCEEEEEcCccCCCCCCCeEEEE-EC
Q psy2979 291 CALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPM---KEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECY-DV 366 (400)
Q Consensus 291 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~y-d~ 366 (400)
+.+||-+|-.+-. .... ...+.+||..+.+|+.++.. .........+.++|+|-++.-........-++|+. |.
T Consensus 2 icinGvly~~a~~-~~~~-~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 2 ICINGVLYWLAWS-EDSD-NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred EEECcEEEeEEEE-CCCC-CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 3568888877655 2222 57899999999999887643 34556677888899999987541111234578887 46
Q ss_pred CCCcEEEec
Q psy2979 367 DNDSWEIMS 375 (400)
Q Consensus 367 ~~~~W~~~~ 375 (400)
.++.|.+..
T Consensus 80 ~k~~Wsk~~ 88 (129)
T PF08268_consen 80 EKQEWSKKH 88 (129)
T ss_pred ccceEEEEE
Confidence 677899774
No 131
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.95 E-value=13 Score=38.69 Aligned_cols=175 Identities=15% Similarity=0.110 Sum_probs=84.3
Q ss_pred eecCEEEEEECCCCCeEEccCCC-CcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLK-FDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPA 240 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~ 240 (400)
.....+..+|..+++.. ..+. ....-.+++.. ++.+++.||.+ ..+..||..+++-.. .+... ....
T Consensus 552 ~~Dg~v~lWd~~~~~~~--~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~~~~~~~~--~~~~~-~~v~ 621 (793)
T PLN00181 552 NFEGVVQVWDVARSQLV--TEMKEHEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSINQGVSIG--TIKTK-ANIC 621 (793)
T ss_pred eCCCeEEEEECCCCeEE--EEecCCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEECCCCcEEE--EEecC-CCeE
Confidence 44566777887665422 1111 11112223332 45677778765 358888887653211 11111 1111
Q ss_pred EEE---eCCEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEE
Q psy2979 241 VVA---HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 241 ~~~---~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 315 (400)
.+. -++..+++|+. ++ .+..||..+.. ...+..-..+ -..+...++..++.|+. ...+..
T Consensus 622 ~v~~~~~~g~~latgs~---dg----~I~iwD~~~~~~~~~~~~~h~~~--V~~v~f~~~~~lvs~s~------D~~iki 686 (793)
T PLN00181 622 CVQFPSESGRSLAFGSA---DH----KVYYYDLRNPKLPLCTMIGHSKT--VSYVRFVDSSTLVSSST------DNTLKL 686 (793)
T ss_pred EEEEeCCCCCEEEEEeC---CC----eEEEEECCCCCccceEecCCCCC--EEEEEEeCCCEEEEEEC------CCEEEE
Confidence 221 25778888887 44 78999986542 1111111111 11222235666666665 346777
Q ss_pred EECCCC----eEEEccCCcCccCcceEE--EECCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 316 YHIAEN----TWEYKSPMKEKRYRPGIA--VIDGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 316 yd~~~~----~W~~~~~~~~~~~~~~~~--~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
||..+. .|..+..+.........+ ..++.+++.|+. + ..|.+|+....
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~-D-----~~v~iw~~~~~ 740 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE-T-----NEVFVYHKAFP 740 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC-C-----CEEEEEECCCC
Confidence 887543 232222211111111122 225667777766 2 46777776543
No 132
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.93 E-value=8.3 Score=36.28 Aligned_cols=196 Identities=9% Similarity=0.066 Sum_probs=97.0
Q ss_pred CceEEccCCccc-ceeeeEEE--ECCeEEEEEeecCEEEEEECCCCCeEEccCC--C-Ccc--eeeeEEEECCEEEEEcc
Q psy2979 135 KVWKTLSCLPFA-ISKHGLVV--SGRNTIYCLDIVDIVYVAASMHKILHSLGSL--K-FDF--DVSGIAMLDGFVYAVGG 206 (400)
Q Consensus 135 ~~w~~~~~~~~~-~~~~~~~~--~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~--~-~~r--~~~~~~~~~~~iyv~GG 206 (400)
..|.+......+ .....+.. .+...-+++.....+..-+---.+|+..... . ..+ ...++...++..|++|-
T Consensus 75 ~~W~q~~~p~~~~~~L~~V~F~~~d~~~GwAVG~~G~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~ 154 (398)
T PLN00033 75 SEWEQVDLPIDPGVVLLDIAFVPDDPTHGFLLGTRQTLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGK 154 (398)
T ss_pred CccEEeecCCCCCCceEEEEeccCCCCEEEEEcCCCEEEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcC
Confidence 368876422222 24445555 2333256664444455444456689885421 1 111 23444445778888754
Q ss_pred cCCCCCCCeEEEEeCCCCceEEccCCC-CcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC----
Q psy2979 207 WDGSCRLDSVERYDPTKNEWSYIEPMK-LAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP---- 280 (400)
Q Consensus 207 ~~~~~~~~~v~~yd~~~~~W~~~~~l~-~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~---- 280 (400)
.. .+..=+-.-++|+.++..+ .+-.......+ ++.++++|.. ..+++-+-...+|+.+..
T Consensus 155 ~G------~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~--------G~v~~S~D~G~tW~~~~~~t~~ 220 (398)
T PLN00033 155 PA------ILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDE--------GAIYVTSNAGRNWKAAVEETVS 220 (398)
T ss_pred ce------EEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEecc--------ceEEEECCCCCCceEccccccc
Confidence 21 2333233356899875321 11112233334 4567777754 256666666778998721
Q ss_pred --CCCC------------ceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEE-EECCCCeEEEccCCcCccCcceEEEECCE
Q psy2979 281 --MLIP------------RSGAAICAL-DSCIYVLGGWHASTENTNRVEC-YHIAENTWEYKSPMKEKRYRPGIAVIDGK 344 (400)
Q Consensus 281 --~~~~------------r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~-yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 344 (400)
+... -...++... ++.++++|-. ..+++ .|.....|+.+......+........++.
T Consensus 221 ~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~-------G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~ 293 (398)
T PLN00033 221 ATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR-------GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG 293 (398)
T ss_pred ccccccccccccccceeccceeeEEEcCCCCEEEEECC-------ccEEEecCCCCcceEEecCCCccceeeeeEcCCCC
Confidence 1100 112222322 5566666642 23443 44444458987644433322222334788
Q ss_pred EEEEcCc
Q psy2979 345 IYVLGGE 351 (400)
Q Consensus 345 lyv~GG~ 351 (400)
++++|..
T Consensus 294 l~l~g~~ 300 (398)
T PLN00033 294 LWLLTRG 300 (398)
T ss_pred EEEEeCC
Confidence 8888754
No 133
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.80 E-value=9.3 Score=36.50 Aligned_cols=243 Identities=9% Similarity=-0.041 Sum_probs=116.6
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEE-ECCeEEEEE---eecCEEEEEECCCCCeEEccCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVV-SGRNTIYCL---DIVDIVYVAASMHKILHSLGSL 185 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~-~~~~~iyv~---~~~~~~~~yd~~~~~w~~~~~~ 185 (400)
..+++....+ .....+++..|.....=..+..-+.. ....+. -++..|..+ .....++.+|..+++-+.+...
T Consensus 165 riayv~~~~~-~~~~~~l~~~d~dg~~~~~lt~~~~~--~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~ 241 (429)
T PRK03629 165 RIAYVVQTNG-GQFPYELRVSDYDGYNQFVVHRSPQP--LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF 241 (429)
T ss_pred eEEEEEeeCC-CCcceeEEEEcCCCCCCEEeecCCCc--eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC
Confidence 3445543222 23456788877655433333221111 111111 233323322 2235688889888776665544
Q ss_pred CCcceeeeEEEECC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCE-EEEEcCccccCCCCcc
Q psy2979 186 KFDFDVSGIAMLDG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGM-LYVTGGAILEDGDGIE 263 (400)
Q Consensus 186 ~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~ 263 (400)
+..-... ...-++ +|++.....+ ...++.+|..+++...+..-+...... .-.-+++ |+..... .+ ..
T Consensus 242 ~~~~~~~-~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~~~~~~~~-~wSPDG~~I~f~s~~---~g--~~ 311 (429)
T PRK03629 242 PRHNGAP-AFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSNNTEP-TWFPDSQNLAYTSDQ---AG--RP 311 (429)
T ss_pred CCCcCCe-EECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCCCCCcCce-EECCCCCEEEEEeCC---CC--Cc
Confidence 3221111 111244 5655433222 245899999998877765433221111 1122444 5443322 22 34
Q ss_pred eEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECC
Q psy2979 264 QVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDG 343 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 343 (400)
.++.+|+.+...+.+...... .......-+|+.+++.+.... ...++.+|+.++.+..+..... -..+ ...-+|
T Consensus 312 ~Iy~~d~~~g~~~~lt~~~~~-~~~~~~SpDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~Lt~~~~-~~~p-~~SpDG 385 (429)
T PRK03629 312 QVYKVNINGGAPQRITWEGSQ-NQDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLTDTFL-DETP-SIAPNG 385 (429)
T ss_pred eEEEEECCCCCeEEeecCCCC-ccCEEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEeCCCCC-CCCc-eECCCC
Confidence 788889887766665322111 111222335544444332221 3478999999999887764221 1112 223466
Q ss_pred EEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 344 KIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 344 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
+..++.+. .+. ...++..+.....=+.+
T Consensus 386 ~~i~~~s~-~~~--~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 386 TMVIYSSS-QGM--GSVLNLVSTDGRFKARL 413 (429)
T ss_pred CEEEEEEc-CCC--ceEEEEEECCCCCeEEC
Confidence 66666554 221 23566777655433333
No 134
>KOG2321|consensus
Probab=92.78 E-value=1.2 Score=42.58 Aligned_cols=105 Identities=15% Similarity=0.239 Sum_probs=63.3
Q ss_pred CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
+-.||+.|.. .+++++|....+|-. |+...-....++.+ -..++.+||. ...|+.+||.+.+
T Consensus 145 scDly~~gsg--------~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~------~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 145 SCDLYLVGSG--------SEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTE------DGVVEFWDPRDKS 208 (703)
T ss_pred CccEEEeecC--------cceEEEEcccccccc--ccccccccceeeeecCccceEEeccc------CceEEEecchhhh
Confidence 4568877654 489999998888753 33333233333444 3578888886 5689999998775
Q ss_pred EE-------EccCCcCccCcceEE--EECC-EEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 323 WE-------YKSPMKEKRYRPGIA--VIDG-KIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 323 W~-------~~~~~~~~~~~~~~~--~~~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
-- .+.+.|..-..++++ .+.+ -|-+.-|. . ...|++||+.+.+
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt-s----~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT-S----TGSVLIYDLRASK 261 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeec-c----CCcEEEEEcccCC
Confidence 21 122344333333333 3433 56665554 2 3468889887653
No 135
>KOG2838|consensus
Probab=92.47 E-value=0.14 Score=43.73 Aligned_cols=69 Identities=23% Similarity=0.366 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc------------ceeecCCCCHH---HHHHHhhhc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------------ETIRLPQLSPY---FLHDCVEQC 66 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m------------~~vrl~~l~~~---~l~~~i~~~ 66 (400)
+.++.-|.+.++...=.||-|...+-.||+||+.||+..|+|+.+ -.+.+.+++.+ .++.+++++
T Consensus 115 ~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tg 194 (401)
T KOG2838|consen 115 NSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITG 194 (401)
T ss_pred hHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhc
Confidence 345666677777777778889999999999999999999999865 24566666655 455566666
Q ss_pred cccc
Q psy2979 67 AIIK 70 (400)
Q Consensus 67 ~l~~ 70 (400)
+.-+
T Consensus 195 Efgm 198 (401)
T KOG2838|consen 195 EFGM 198 (401)
T ss_pred ccch
Confidence 6533
No 136
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.39 E-value=7.4 Score=34.39 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=95.6
Q ss_pred EccCCCC--cccccEEEEeCCEEEEEcCcccc--------CCC------C-cceEEEEeCCCCc----eeeccCCCCCce
Q psy2979 228 YIEPMKL--AVTSPAVVAHEGMLYVTGGAILE--------DGD------G-IEQVQRYNPKVNQ----WQDLAPMLIPRS 286 (400)
Q Consensus 228 ~~~~l~~--~~~~~~~~~~~~~iyv~GG~~~~--------~~~------~-~~~v~~yd~~~~~----W~~~~~~~~~r~ 286 (400)
.+.+.|. .-.+.++..+++.|| +||.... ++. + -+.|..||..+++ |.+- .-.++.
T Consensus 27 lvG~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkes--ih~~~~ 103 (339)
T PF09910_consen 27 LVGPPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKES--IHDKTK 103 (339)
T ss_pred eccCCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecc--cCCccc
Confidence 4444442 334456667888888 5775320 111 1 4568889988887 5543 222333
Q ss_pred eeeEE------EECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCe
Q psy2979 287 GAAIC------ALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDS 360 (400)
Q Consensus 287 ~~~~~------~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~ 360 (400)
.++=+ -++++|++.=+.... ..-+|..|..++.=+.+..-|..+ ++...|...+-+ . .-......
T Consensus 104 WaGEVSdIlYdP~~D~LLlAR~DGh~---nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~-~~~~g~~~ 174 (339)
T PF09910_consen 104 WAGEVSDILYDPYEDRLLLARADGHA---NLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--N-NFHKGVSG 174 (339)
T ss_pred cccchhheeeCCCcCEEEEEecCCcc---eeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--c-ccccCCce
Confidence 33322 126788876432211 346889999999888877666542 344445554433 2 33345688
Q ss_pred EEEEECCCCcE--EEecC-------CCCCCCceeeEEEcccccccccC
Q psy2979 361 IECYDVDNDSW--EIMSH-------LPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 361 v~~yd~~~~~W--~~~~~-------~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
|.+||..+++| +..+. -...|..-.++.+.++.+.|+.|
T Consensus 175 i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rG 222 (339)
T PF09910_consen 175 IHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRG 222 (339)
T ss_pred EEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEec
Confidence 99999999999 44321 11234556678888999999877
No 137
>KOG1036|consensus
Probab=91.93 E-value=8.4 Score=34.02 Aligned_cols=163 Identities=15% Similarity=0.144 Sum_probs=83.4
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP 239 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~ 239 (400)
|.+......+..||...+.-.. .....-.-..++..+..-.+.||.++ .+-+||..++.=..+..-..+...-
T Consensus 28 LLvssWDgslrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~dg-----~vr~~Dln~~~~~~igth~~~i~ci 100 (323)
T KOG1036|consen 28 LLVSSWDGSLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGLDG-----QVRRYDLNTGNEDQIGTHDEGIRCI 100 (323)
T ss_pred EEEEeccCcEEEEeccchhhhh--heecCCceeeeeccCCceEEEeccCc-----eEEEEEecCCcceeeccCCCceEEE
Confidence 5554555667778776652111 11111111112223444455677664 5889999988655554322222111
Q ss_pred EEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECC
Q psy2979 240 AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 240 ~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
.-. ......|.||. |. .+..+|+.... .+.....+..-+++-+ .+.+.++|+. ...|..||..
T Consensus 101 ~~~-~~~~~vIsgsW---D~----~ik~wD~R~~~--~~~~~d~~kkVy~~~v-~g~~LvVg~~------~r~v~iyDLR 163 (323)
T KOG1036|consen 101 EYS-YEVGCVISGSW---DK----TIKFWDPRNKV--VVGTFDQGKKVYCMDV-SGNRLVVGTS------DRKVLIYDLR 163 (323)
T ss_pred Eee-ccCCeEEEccc---Cc----cEEEEeccccc--cccccccCceEEEEec-cCCEEEEeec------CceEEEEEcc
Confidence 111 22345678888 54 78889987621 1122223333344444 4555566655 5689999987
Q ss_pred CCeEEE-------------ccCCcCccCcceEEEECCEEEE
Q psy2979 320 ENTWEY-------------KSPMKEKRYRPGIAVIDGKIYV 347 (400)
Q Consensus 320 ~~~W~~-------------~~~~~~~~~~~~~~~~~~~lyv 347 (400)
+..--. ++-.| .+.++.+..++|++++
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAV 203 (323)
T ss_pred cccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEE
Confidence 654211 11122 4455556666666665
No 138
>PRK02889 tolB translocation protein TolB; Provisional
Probab=91.82 E-value=12 Score=35.66 Aligned_cols=223 Identities=10% Similarity=0.031 Sum_probs=105.4
Q ss_pred cceEEEEEcCCCceEEccCCcccceeeeEEE-ECCeEEEEE---eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECC
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAISKHGLVV-SGRNTIYCL---DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDG 199 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~-~~~~~iyv~---~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~ 199 (400)
...++..|.......++..-+.... +.+. -++..|+.. .....++.+|..+++-..+...+.... .....-++
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~--~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG 251 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPII--SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDG 251 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcc--cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCC
Confidence 3567777765444444432221111 1122 234324433 223568999998876555543331111 11111244
Q ss_pred -EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCC-EEEEEcCccccCCCCcceEEEEeCCCCceee
Q psy2979 200 -FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQD 277 (400)
Q Consensus 200 -~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 277 (400)
+|++....++ ...++.+|..++....+..-....... .-.-+| .|+..+.. .+ ...++.+|..+...+.
T Consensus 252 ~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~wSpDG~~l~f~s~~---~g--~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 252 RTLAVALSRDG---NSQIYTVNADGSGLRRLTQSSGIDTEP-FFSPDGRSIYFTSDR---GG--APQIYRMPASGGAAQR 322 (427)
T ss_pred CEEEEEEccCC---CceEEEEECCCCCcEECCCCCCCCcCe-EEcCCCCEEEEEecC---CC--CcEEEEEECCCCceEE
Confidence 5554433332 356888898877766654322111111 222344 45544322 22 3478888887777666
Q ss_pred ccCCCCCceeeeEEEECCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCC
Q psy2979 278 LAPMLIPRSGAAICALDSC-IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG 356 (400)
Q Consensus 278 ~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~ 356 (400)
+..-. .........-+|+ |+..... +. ...++.+|..+++...+..-.. ...-...-+|+..++... .+.
T Consensus 323 lt~~g-~~~~~~~~SpDG~~Ia~~s~~-~g---~~~I~v~d~~~g~~~~lt~~~~--~~~p~~spdg~~l~~~~~-~~g- 393 (427)
T PRK02889 323 VTFTG-SYNTSPRISPDGKLLAYISRV-GG---AFKLYVQDLATGQVTALTDTTR--DESPSFAPNGRYILYATQ-QGG- 393 (427)
T ss_pred EecCC-CCcCceEECCCCCEEEEEEcc-CC---cEEEEEEECCCCCeEEccCCCC--ccCceECCCCCEEEEEEe-cCC-
Confidence 54211 1111122223454 4433322 11 2479999998888776653211 111122235665555443 221
Q ss_pred CCCeEEEEECCC
Q psy2979 357 YHDSIECYDVDN 368 (400)
Q Consensus 357 ~~~~v~~yd~~~ 368 (400)
...++.+|...
T Consensus 394 -~~~l~~~~~~g 404 (427)
T PRK02889 394 -RSVLAAVSSDG 404 (427)
T ss_pred -CEEEEEEECCC
Confidence 34677888744
No 139
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.70 E-value=12 Score=35.27 Aligned_cols=195 Identities=11% Similarity=0.061 Sum_probs=97.1
Q ss_pred eeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCC-CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceE
Q psy2979 150 HGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLK-FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWS 227 (400)
Q Consensus 150 ~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 227 (400)
.++...++. .|++.....++.=.-.-.+|+.++..+ .+-.......+ ++..+++|.. ..+++=+-.-.+|+
T Consensus 140 ~~v~f~~~~-g~~vG~~G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~------G~v~~S~D~G~tW~ 212 (398)
T PLN00033 140 NSISFKGKE-GWIIGKPAILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDE------GAIYVTSNAGRNWK 212 (398)
T ss_pred eeeEEECCE-EEEEcCceEEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEecc------ceEEEECCCCCCce
Confidence 445555666 887744444444444567899876432 12122223333 4567777632 23555455566898
Q ss_pred EccC------CCCcc------------cccEEEE-eCCEEEEEcCccccCCCCcceEEE-EeCCCCceeeccCCCCCcee
Q psy2979 228 YIEP------MKLAV------------TSPAVVA-HEGMLYVTGGAILEDGDGIEQVQR-YNPKVNQWQDLAPMLIPRSG 287 (400)
Q Consensus 228 ~~~~------l~~~~------------~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~-yd~~~~~W~~~~~~~~~r~~ 287 (400)
.... +.... ....+.. -++.++++|-. ..+++ .|.....|+.+.. +.++..
T Consensus 213 ~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~--------G~~~~s~d~G~~~W~~~~~-~~~~~l 283 (398)
T PLN00033 213 AAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR--------GNFYLTWEPGQPYWQPHNR-ASARRI 283 (398)
T ss_pred EcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC--------ccEEEecCCCCcceEEecC-CCccce
Confidence 8621 11110 0011121 24455555543 13443 4444445898853 333333
Q ss_pred eeE-EEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE-----EEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCC
Q psy2979 288 AAI-CALDSCIYVLGGWHASTENTNRVECYHIAENTW-----EYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHD 359 (400)
Q Consensus 288 ~~~-~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W-----~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~ 359 (400)
.++ ...++.++++|.. ..+..-+-....| ..++. +..+.....+.. ++.++++|.. .
T Consensus 284 ~~v~~~~dg~l~l~g~~-------G~l~~S~d~G~~~~~~~f~~~~~-~~~~~~l~~v~~~~d~~~~a~G~~-------G 348 (398)
T PLN00033 284 QNMGWRADGGLWLLTRG-------GGLYVSKGTGLTEEDFDFEEADI-KSRGFGILDVGYRSKKEAWAAGGS-------G 348 (398)
T ss_pred eeeeEcCCCCEEEEeCC-------ceEEEecCCCCcccccceeeccc-CCCCcceEEEEEcCCCcEEEEECC-------C
Confidence 333 3347888888742 2343333333434 44332 112222222222 6788888865 2
Q ss_pred eEEEEECCCCcEEEec
Q psy2979 360 SIECYDVDNDSWEIMS 375 (400)
Q Consensus 360 ~v~~yd~~~~~W~~~~ 375 (400)
-++.-....++|+..+
T Consensus 349 ~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 349 ILLRSTDGGKSWKRDK 364 (398)
T ss_pred cEEEeCCCCcceeEcc
Confidence 3555556677899975
No 140
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.67 E-value=6.8 Score=32.78 Aligned_cols=165 Identities=16% Similarity=0.180 Sum_probs=101.1
Q ss_pred eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCC-CcccccEEEEeCCEEEEEcCccccCCCCcceEEEE
Q psy2979 190 DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK-LAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY 268 (400)
Q Consensus 190 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~-~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 268 (400)
..+++...++++|..-|.-+. +.+.++|..+++=..-.+++ ....+-+.+..++.+|..-=. ++ ..+.|
T Consensus 47 fTQGL~~~~g~i~esTG~yg~---S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~---eg----vaf~~ 116 (262)
T COG3823 47 FTQGLEYLDGHILESTGLYGF---SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWK---EG----VAFKY 116 (262)
T ss_pred hhcceeeeCCEEEEecccccc---ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEec---cc----eeEEE
Confidence 344566678899988776543 57889999977533333444 455666888899999988433 33 45777
Q ss_pred eCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE---EEccCCcCcc-CcceEEEECCE
Q psy2979 269 NPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW---EYKSPMKEKR-YRPGIAVIDGK 344 (400)
Q Consensus 269 d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W---~~~~~~~~~~-~~~~~~~~~~~ 344 (400)
|+ ++...+...+.+-.+.+.+.-+..+.+..| ...+..-||++-.= ..+..--.|. ..--.--++|.
T Consensus 117 d~--~t~~~lg~~~y~GeGWgLt~d~~~LimsdG-------satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~ 187 (262)
T COG3823 117 DA--DTLEELGRFSYEGEGWGLTSDDKNLIMSDG-------SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGE 187 (262)
T ss_pred Ch--HHhhhhcccccCCcceeeecCCcceEeeCC-------ceEEEecCHHHhhhcceEEEEECCeecccccceeeeccE
Confidence 76 445566666666677788877777777777 45566667764321 1111111111 11112233555
Q ss_pred EEEEcCccCCCCCCCeEEEEECCCC---cEEEecCCCC
Q psy2979 345 IYVLGGEEGWDGYHDSIECYDVDND---SWEIMSHLPS 379 (400)
Q Consensus 345 lyv~GG~~~~~~~~~~v~~yd~~~~---~W~~~~~~~~ 379 (400)
+|.-- -..+.|.+.||.++ .|.++..++.
T Consensus 188 lyANV------w~t~~I~rI~p~sGrV~~widlS~L~~ 219 (262)
T COG3823 188 LYANV------WQTTRIARIDPDSGRVVAWIDLSGLLK 219 (262)
T ss_pred EEEee------eeecceEEEcCCCCcEEEEEEccCCch
Confidence 55422 23567889999998 4988877643
No 141
>KOG0278|consensus
Probab=91.43 E-value=5.5 Score=34.18 Aligned_cols=119 Identities=19% Similarity=0.242 Sum_probs=66.8
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEc-CccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG-GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~G-G~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
.+|..+|..+++=.+--.++.+....- ...+|.|..+. |. +|--+|+.+-.--+--.||.....+++-
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtSlE-vs~dG~ilTia~gs---------sV~Fwdaksf~~lKs~k~P~nV~SASL~- 233 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTSLE-VSQDGRILTIAYGS---------SVKFWDAKSFGLLKSYKMPCNVESASLH- 233 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCccee-eccCCCEEEEecCc---------eeEEeccccccceeeccCcccccccccc-
Confidence 568888888886544323333332222 22355555542 32 5667777554433333555443322222
Q ss_pred ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEE-E--CCEEEEEcCc
Q psy2979 293 LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAV-I--DGKIYVLGGE 351 (400)
Q Consensus 293 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~-~--~~~lyv~GG~ 351 (400)
-+..+||.||. ...+++||-.++.=. .....+..++.-++ + +|.+|..|-.
T Consensus 234 P~k~~fVaGge------d~~~~kfDy~TgeEi--~~~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 234 PKKEFFVAGGE------DFKVYKFDYNTGEEI--GSYNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred CCCceEEecCc------ceEEEEEeccCCcee--eecccCCCCceEEEEECCCCceeeccCC
Confidence 24589999997 567889998887532 22223333333222 2 8999999977
No 142
>KOG0289|consensus
Probab=91.39 E-value=12 Score=34.76 Aligned_cols=123 Identities=11% Similarity=0.195 Sum_probs=72.8
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++-||..|-.+ ..+-+||..+.. .++.+|..-.--.... -||...+.+-. ++ +|.+||.....
T Consensus 358 DgLifgtgt~d-----~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~ad---d~----~V~lwDLRKl~- 422 (506)
T KOG0289|consen 358 DGLIFGTGTPD-----GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAAD---DG----SVKLWDLRKLK- 422 (506)
T ss_pred CceEEeccCCC-----ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEec---CC----eEEEEEehhhc-
Confidence 66676665443 347789998876 6666665222222222 36666666554 33 58999987665
Q ss_pred eeccCCCCCc-eeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEEC
Q psy2979 276 QDLAPMLIPR-SGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVID 342 (400)
Q Consensus 276 ~~~~~~~~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 342 (400)
..+..+.+- .......+ .|...+++|. .-.|+.|+-.+.+|+.+..++..-.-...+-++
T Consensus 423 -n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~------~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 423 -NFKTIQLDEKKEVNSLSFDQSGTYLGIAGS------DLQVYICKKKTKSWTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred -ccceeeccccccceeEEEcCCCCeEEeecc------eeEEEEEecccccceeeehhhhcccccceeeec
Confidence 222222221 12223333 4567777765 567888999999999998776544334445553
No 143
>KOG0316|consensus
Probab=91.34 E-value=8.4 Score=32.82 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=69.9
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeC--CEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE--GMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++.=+..||-+ ..+..||..|++=. ..+......-.++.+| ..+.+.|+. | .++..||-.++..
T Consensus 70 Dnskf~s~GgD-----k~v~vwDV~TGkv~--Rr~rgH~aqVNtV~fNeesSVv~Sgsf---D----~s~r~wDCRS~s~ 135 (307)
T KOG0316|consen 70 DNSKFASCGGD-----KAVQVWDVNTGKVD--RRFRGHLAQVNTVRFNEESSVVASGSF---D----SSVRLWDCRSRSF 135 (307)
T ss_pred cccccccCCCC-----ceEEEEEcccCeee--eecccccceeeEEEecCcceEEEeccc---c----ceeEEEEcccCCC
Confidence 44444444433 56888999888521 1111111111223333 356677777 4 4799999999999
Q ss_pred eeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 276 QDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 276 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+.+.-+...+-+...+.+.+..++.|-. ...+-.||...++-
T Consensus 136 ePiQildea~D~V~Si~v~~heIvaGS~------DGtvRtydiR~G~l 177 (307)
T KOG0316|consen 136 EPIQILDEAKDGVSSIDVAEHEIVAGSV------DGTVRTYDIRKGTL 177 (307)
T ss_pred CccchhhhhcCceeEEEecccEEEeecc------CCcEEEEEeeccee
Confidence 9888888888888888888888887765 45788899877763
No 144
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=91.29 E-value=0.08 Score=38.78 Aligned_cols=60 Identities=28% Similarity=0.575 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhcCceeceE-------EEECCeEEehhhHHHhhcCccc-----------cccceeecCCCCHHHHHH
Q psy2979 2 KMVLTGFNEARKNNEFCDVT-------LCVDGSKFPAHRVVLAASSPYF-----------KVLETIRLPQLSPYFLHD 61 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~-------l~~~~~~~~~hr~vLaa~s~yf-----------~~m~~vrl~~l~~~~l~~ 61 (400)
++|..+|.++.+++.|..+. |..|+..+..+..|+.++..|. +.|++|||+.++++.|.+
T Consensus 22 ~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~~~~~~~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 22 RFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDPERRRHLPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred HHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhCCCCCCCHHHHHh
Confidence 46788899999999998874 5666666667888888877654 368999999999997765
No 145
>PRK04043 tolB translocation protein TolB; Provisional
Probab=91.28 E-value=14 Score=35.21 Aligned_cols=148 Identities=9% Similarity=0.034 Sum_probs=85.9
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeCC-EEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
..++.+|+.+++=+.+...+....... ..-++ +|.+.-.. ++ ...++.+|..+..++++.+.+..-. .....
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~-~SPDG~~la~~~~~---~g--~~~Iy~~dl~~g~~~~LT~~~~~d~-~p~~S 285 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSD-VSKDGSKLLLTMAP---KG--QPDIYLYDTNTKTLTQITNYPGIDV-NGNFV 285 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeE-ECCCCCEEEEEEcc---CC--CcEEEEEECCCCcEEEcccCCCccC-ccEEC
Confidence 479999999887666655332211112 22344 56554333 22 3589999999999988865443111 11222
Q ss_pred ECC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCE-EEEEcCccCCCC---CCCeEEEEECC
Q psy2979 293 LDS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGK-IYVLGGEEGWDG---YHDSIECYDVD 367 (400)
Q Consensus 293 ~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~---~~~~v~~yd~~ 367 (400)
-+| +|+......+ ...++.+|..+++.+.+.... .... ...-+|+ |...... .... ...+++.+|++
T Consensus 286 PDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g--~~~~-~~SPDG~~Ia~~~~~-~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 286 EDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHG--KNNS-SVSTYKNYIVYSSRE-TNNEFGKNTFNLYLISTN 357 (419)
T ss_pred CCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCC--CcCc-eECCCCCEEEEEEcC-CCcccCCCCcEEEEEECC
Confidence 244 6776654321 458999999998887665321 1222 2222444 4444332 2111 23689999999
Q ss_pred CCcEEEecC
Q psy2979 368 NDSWEIMSH 376 (400)
Q Consensus 368 ~~~W~~~~~ 376 (400)
++.++.+..
T Consensus 358 ~g~~~~LT~ 366 (419)
T PRK04043 358 SDYIRRLTA 366 (419)
T ss_pred CCCeEECCC
Confidence 999988754
No 146
>PLN00181 protein SPA1-RELATED; Provisional
Probab=90.98 E-value=17 Score=37.92 Aligned_cols=140 Identities=11% Similarity=0.126 Sum_probs=70.1
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc-cccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV-TSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~-~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
+...+.|+.+ ..+..||..+++.. ..+.... .-.+++. .++.+++.||. ++ .+..||..+..-
T Consensus 545 ~~~las~~~D-----g~v~lWd~~~~~~~--~~~~~H~~~V~~l~~~p~~~~~L~Sgs~---Dg----~v~iWd~~~~~~ 610 (793)
T PLN00181 545 KSQVASSNFE-----GVVQVWDVARSQLV--TEMKEHEKRVWSIDYSSADPTLLASGSD---DG----SVKLWSINQGVS 610 (793)
T ss_pred CCEEEEEeCC-----CeEEEEECCCCeEE--EEecCCCCCEEEEEEcCCCCCEEEEEcC---CC----EEEEEECCCCcE
Confidence 4455556654 35888898776432 2222111 1112222 25678888887 54 688888865432
Q ss_pred eeccCCCCCceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEEccCCcCccCcceEEEECCEEEEEcCc
Q psy2979 276 QDLAPMLIPRSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAENT--WEYKSPMKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 276 ~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
. ..+.......++.. .++..++.|+. ...+..||..+.. ...+...... ...+...++..++.|+.
T Consensus 611 ~--~~~~~~~~v~~v~~~~~~g~~latgs~------dg~I~iwD~~~~~~~~~~~~~h~~~--V~~v~f~~~~~lvs~s~ 680 (793)
T PLN00181 611 I--GTIKTKANICCVQFPSESGRSLAFGSA------DHKVYYYDLRNPKLPLCTMIGHSKT--VSYVRFVDSSTLVSSST 680 (793)
T ss_pred E--EEEecCCCeEEEEEeCCCCCEEEEEeC------CCeEEEEECCCCCccceEecCCCCC--EEEEEEeCCCEEEEEEC
Confidence 1 11111111111111 24677788776 4679999987543 2222111111 11122235666666665
Q ss_pred cCCCCCCCeEEEEECCC
Q psy2979 352 EGWDGYHDSIECYDVDN 368 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~ 368 (400)
+ ..|-+||+..
T Consensus 681 -D-----~~ikiWd~~~ 691 (793)
T PLN00181 681 -D-----NTLKLWDLSM 691 (793)
T ss_pred -C-----CEEEEEeCCC
Confidence 2 3567777754
No 147
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=90.94 E-value=3.3 Score=31.95 Aligned_cols=82 Identities=6% Similarity=0.147 Sum_probs=56.5
Q ss_pred EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC---CCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEE-EC
Q psy2979 243 AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP---MLIPRSGAAICALDSCIYVLGGWHASTENTNRVECY-HI 318 (400)
Q Consensus 243 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y-d~ 318 (400)
.+||.+|-.+-. .......+.+||..+++|+.++. .........++.++|+|-++.-........-.+|.. |.
T Consensus 3 cinGvly~~a~~---~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 3 CINGVLYWLAWS---EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred EECcEEEeEEEE---CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 467888876554 11115689999999999998853 235566778889999998887544332113567777 56
Q ss_pred CCCeEEEcc
Q psy2979 319 AENTWEYKS 327 (400)
Q Consensus 319 ~~~~W~~~~ 327 (400)
.++.|++..
T Consensus 80 ~k~~Wsk~~ 88 (129)
T PF08268_consen 80 EKQEWSKKH 88 (129)
T ss_pred ccceEEEEE
Confidence 678898763
No 148
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=90.70 E-value=13 Score=34.41 Aligned_cols=97 Identities=10% Similarity=0.147 Sum_probs=57.4
Q ss_pred CCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC-----CC--ceeeeEEEECC
Q psy2979 223 KNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML-----IP--RSGAAICALDS 295 (400)
Q Consensus 223 ~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-----~~--r~~~~~~~~~~ 295 (400)
.+.|+.+.. .....--++.++|++|++.-. ..++.++..- .-+++++.. .. ......+...|
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~~--------G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~G 257 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDSI--------GIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCG 257 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcCC--------CeEEEEecCC-ceeeecceecccccCCcccCceeEEEECC
Confidence 489999964 223345678899999999432 2466666421 122222211 01 12234667788
Q ss_pred eEEEEcCcCCCC------------C-CCCeEEEEECCCCeEEEccCCc
Q psy2979 296 CIYVLGGWHAST------------E-NTNRVECYHIAENTWEYKSPMK 330 (400)
Q Consensus 296 ~iyv~GG~~~~~------------~-~~~~v~~yd~~~~~W~~~~~~~ 330 (400)
+++++....... . ..-.|++.|.+..+|.++..+.
T Consensus 258 dLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 258 ELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 899998742110 0 0125666688899999988765
No 149
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=90.51 E-value=16 Score=34.54 Aligned_cols=139 Identities=16% Similarity=0.085 Sum_probs=78.2
Q ss_pred ceEEEEEcCCCceEEcc-CCccccee------------eeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCccee
Q psy2979 125 RSVEGFCVKTKVWKTLS-CLPFAISK------------HGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDV 191 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~-~~~~~~~~------------~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~ 191 (400)
.+++.|||.+++-..+. .+|..|.. --.+++++. .+++.+....+.+++..+--.+++....-|+.
T Consensus 287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd-~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~ 365 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD-YIALVSRGKAFIMRPWDGYSIQVGKKGGVRYR 365 (668)
T ss_pred CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCc-EEEEEecCcEEEECCCCCeeEEcCCCCceEEE
Confidence 36899999999887763 33433211 113455666 66666667778888776655555554444444
Q ss_pred eeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCC
Q psy2979 192 SGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPK 271 (400)
Q Consensus 192 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~ 271 (400)
+.. .++.-.++|-.++ +.+.+||..+..-..+.+ +..+-....+.-+|+..+++-. .-++|.+|..
T Consensus 366 r~~--~~~e~~vigt~dg----D~l~iyd~~~~e~kr~e~-~lg~I~av~vs~dGK~~vvaNd-------r~el~vidid 431 (668)
T COG4946 366 RIQ--VDPEGDVIGTNDG----DKLGIYDKDGGEVKRIEK-DLGNIEAVKVSPDGKKVVVAND-------RFELWVIDID 431 (668)
T ss_pred EEc--cCCcceEEeccCC----ceEEEEecCCceEEEeeC-CccceEEEEEcCCCcEEEEEcC-------ceEEEEEEec
Confidence 332 2344566665554 468899988887544432 1111111222335554444433 2367777777
Q ss_pred CCceeec
Q psy2979 272 VNQWQDL 278 (400)
Q Consensus 272 ~~~W~~~ 278 (400)
+..-+.+
T Consensus 432 ngnv~~i 438 (668)
T COG4946 432 NGNVRLI 438 (668)
T ss_pred CCCeeEe
Confidence 7665544
No 150
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=90.08 E-value=15 Score=33.80 Aligned_cols=241 Identities=11% Similarity=0.058 Sum_probs=111.9
Q ss_pred cEEEEEecc----CCCcccceEEEEEcCCCceE-EccCCcccc-----eeeeEEEE-CCeEEEEE--eecCEEEEEECCC
Q psy2979 110 NVIIAVGGE----DDKVVLRSVEGFCVKTKVWK-TLSCLPFAI-----SKHGLVVS-GRNTIYCL--DIVDIVYVAASMH 176 (400)
Q Consensus 110 ~~i~~~gg~----~~~~~~~~~~~yd~~~~~w~-~~~~~~~~~-----~~~~~~~~-~~~~iyv~--~~~~~~~~yd~~~ 176 (400)
..+|+.-.. ..+.....+.+||+.+.+-. +++..+.|+ .....++. +++.+|+. ...+.+-..|..+
T Consensus 58 ~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~ 137 (352)
T TIGR02658 58 SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG 137 (352)
T ss_pred CEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCC
Confidence 466665542 12345578999999998754 333223333 12233333 55548877 3467889999998
Q ss_pred CCeEEccCCCCccee-------eeEEEECCEE-EEEcccCCCCCCCeEEEEeCCCCceEEccCCC--Ccccc-cEEEEeC
Q psy2979 177 KILHSLGSLKFDFDV-------SGIAMLDGFV-YAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK--LAVTS-PAVVAHE 245 (400)
Q Consensus 177 ~~w~~~~~~~~~r~~-------~~~~~~~~~i-yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~--~~~~~-~~~~~~~ 245 (400)
++-...-+.|.+..- +.+.+.++.. .+.-+.++.....+...||.... .+-.-| .+..+ ...+...
T Consensus 138 ~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~---~v~~rP~~~~~dg~~~~vs~e 214 (352)
T TIGR02658 138 KAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE---YLINHPAYSNKSGRLVWPTYT 214 (352)
T ss_pred CcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcc---ccccCCceEcCCCcEEEEecC
Confidence 876553333322211 1122233322 22222222222333344444321 010111 11111 1123344
Q ss_pred CEEEEEcCccccCCCC-cceEEE--EeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEc--CcCCC-CCCCCeEEEEE
Q psy2979 246 GMLYVTGGAILEDGDG-IEQVQR--YNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLG--GWHAS-TENTNRVECYH 317 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~-~~~v~~--yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~G--G~~~~-~~~~~~v~~yd 317 (400)
|.+|++.=.. ++.. ...+.. +......|..... . .++.. ++++|+.. +..+. ....+.++.+|
T Consensus 215 G~V~~id~~~--~~~~~~~~~~~~~~~~~~~~wrP~g~-----q--~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD 285 (352)
T TIGR02658 215 GKIFQIDLSS--GDAKFLPAIEAFTEAEKADGWRPGGW-----Q--QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD 285 (352)
T ss_pred CeEEEEecCC--CcceecceeeeccccccccccCCCcc-----e--eEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence 6666663110 0000 111111 1111222332211 1 12333 67899842 21111 11157899999
Q ss_pred CCCCeEEEccCCcCccCcceEEEE-C-C-EEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 318 IAENTWEYKSPMKEKRYRPGIAVI-D-G-KIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 318 ~~~~~W~~~~~~~~~~~~~~~~~~-~-~-~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+.+.+ .+...+.++..+++++- + . .+|+.-+. .++|.++|..+.+
T Consensus 286 ~~t~k--vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~------s~~VsViD~~t~k 333 (352)
T TIGR02658 286 AKTGK--RLRKIELGHEIDSINVSQDAKPLLYALSTG------DKTLYIFDAETGK 333 (352)
T ss_pred CCCCe--EEEEEeCCCceeeEEECCCCCeEEEEeCCC------CCcEEEEECcCCe
Confidence 76654 55555555555555544 3 4 57776654 3579999988873
No 151
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.95 E-value=13 Score=32.86 Aligned_cols=132 Identities=15% Similarity=0.266 Sum_probs=78.6
Q ss_pred EccCCCC--cceeeeEEEECCEEEEEcccCC---------C--------CCCCeEEEEeCCCCceEEcc--CCCCccccc
Q psy2979 181 SLGSLKF--DFDVSGIAMLDGFVYAVGGWDG---------S--------CRLDSVERYDPTKNEWSYIE--PMKLAVTSP 239 (400)
Q Consensus 181 ~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~---------~--------~~~~~v~~yd~~~~~W~~~~--~l~~~~~~~ 239 (400)
.+.+.|. .-.+-++..+++.||+ ||+-- . .--+.+..||..+++=+.+- ++..+....
T Consensus 27 lvG~~P~SGGDTYNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~Wa 105 (339)
T PF09910_consen 27 LVGPPPTSGGDTYNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWA 105 (339)
T ss_pred eccCCCCCCCccceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccc
Confidence 3444443 3456667777888886 77631 0 12356888999888633331 222222222
Q ss_pred EEE------EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeE
Q psy2979 240 AVV------AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRV 313 (400)
Q Consensus 240 ~~~------~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v 313 (400)
+=+ -+++.+++.=+ ||...-.+|..|.++..-+.+..-|.+ -++..++...|-+ .+-... ...+
T Consensus 106 GEVSdIlYdP~~D~LLlAR~----DGh~nLGvy~ldr~~g~~~~L~~~ps~---KG~~~~D~a~F~i--~~~~~g-~~~i 175 (339)
T PF09910_consen 106 GEVSDILYDPYEDRLLLARA----DGHANLGVYSLDRRTGKAEKLSSNPSL---KGTLVHDYACFGI--NNFHKG-VSGI 175 (339)
T ss_pred cchhheeeCCCcCEEEEEec----CCcceeeeEEEcccCCceeeccCCCCc---CceEeeeeEEEec--cccccC-CceE
Confidence 211 13678887633 443345789999999888888766655 3344445454433 222333 7899
Q ss_pred EEEECCCCeE
Q psy2979 314 ECYHIAENTW 323 (400)
Q Consensus 314 ~~yd~~~~~W 323 (400)
.+||..+++|
T Consensus 176 ~~~Dli~~~~ 185 (339)
T PF09910_consen 176 HCLDLISGKW 185 (339)
T ss_pred EEEEccCCeE
Confidence 9999999999
No 152
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.73 E-value=18 Score=34.17 Aligned_cols=237 Identities=11% Similarity=0.062 Sum_probs=118.0
Q ss_pred CcccceEEEEEcCCCceEEccCCcccceeeeEEEECC-eEEEEE-----ee------cCEEEEEECCCCCeE--EccCCC
Q psy2979 121 KVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGR-NTIYCL-----DI------VDIVYVAASMHKILH--SLGSLK 186 (400)
Q Consensus 121 ~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~-~~iyv~-----~~------~~~~~~yd~~~~~w~--~~~~~~ 186 (400)
+.....+.++|..+++... ..++..... .++-.++ ..+|.. .. ...++++...+..-. .+=.-+
T Consensus 146 G~e~~~l~v~Dl~tg~~l~-d~i~~~~~~-~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~ 223 (414)
T PF02897_consen 146 GSEWYTLRVFDLETGKFLP-DGIENPKFS-SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP 223 (414)
T ss_dssp TSSEEEEEEEETTTTEEEE-EEEEEEESE-EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T
T ss_pred CCceEEEEEEECCCCcCcC-Ccccccccc-eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec
Confidence 3444577888888875432 111222211 1444444 313333 12 445677766655432 111111
Q ss_pred Ccce-eeeEEEE-CCE-EEEEcccCCCCCCCeEEEEeCCCC-----ceEEccCCCCcccccEEEEeCCEEEEEcCccccC
Q psy2979 187 FDFD-VSGIAML-DGF-VYAVGGWDGSCRLDSVERYDPTKN-----EWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILED 258 (400)
Q Consensus 187 ~~r~-~~~~~~~-~~~-iyv~GG~~~~~~~~~v~~yd~~~~-----~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~ 258 (400)
.... ...+..- +++ |++.-. .+.. .+.++..|.... .|..+.+- ..-..+.+...++.+|+.... +
T Consensus 224 ~~~~~~~~~~~s~d~~~l~i~~~-~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~-~~~~~~~v~~~~~~~yi~Tn~---~ 297 (414)
T PF02897_consen 224 DEPFWFVSVSRSKDGRYLFISSS-SGTS-ESEVYLLDLDDGGSPDAKPKLLSPR-EDGVEYYVDHHGDRLYILTND---D 297 (414)
T ss_dssp TCTTSEEEEEE-TTSSEEEEEEE-SSSS-EEEEEEEECCCTTTSS-SEEEEEES-SSS-EEEEEEETTEEEEEE-T---T
T ss_pred CCCcEEEEEEecCcccEEEEEEE-cccc-CCeEEEEeccccCCCcCCcEEEeCC-CCceEEEEEccCCEEEEeeCC---C
Confidence 1122 2222222 333 333222 2222 367888888875 78877542 222223444558899987553 2
Q ss_pred CCCcceEEEEeCCCCc---ee-eccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECC-CCeEEEccCCcCcc
Q psy2979 259 GDGIEQVQRYNPKVNQ---WQ-DLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIA-ENTWEYKSPMKEKR 333 (400)
Q Consensus 259 ~~~~~~v~~yd~~~~~---W~-~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~ 333 (400)
.. ...+..++..... |. .+.+-......-.+...++.|++.-=.+. ...+..||+. +..-..++ +|..-
T Consensus 298 a~-~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~----~~~l~v~~~~~~~~~~~~~-~p~~g 371 (414)
T PF02897_consen 298 AP-NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG----SSRLRVYDLDDGKESREIP-LPEAG 371 (414)
T ss_dssp -T-T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT----EEEEEEEETT-TEEEEEEE-SSSSS
T ss_pred CC-CcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC----ccEEEEEECCCCcEEeeec-CCcce
Confidence 22 3578888877665 66 55444444455666667888887753322 5689999998 33333333 33211
Q ss_pred CcceEEE-E-CCEEEE-EcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 334 YRPGIAV-I-DGKIYV-LGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 334 ~~~~~~~-~-~~~lyv-~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
...+... . .+.+++ +.+. ..-..++.||+.+++.+.+.
T Consensus 372 ~v~~~~~~~~~~~~~~~~ss~----~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 372 SVSGVSGDFDSDELRFSYSSF----TTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEES-TT-SEEEEEEEET----TEEEEEEEEETTTTCEEEEE
T ss_pred EEeccCCCCCCCEEEEEEeCC----CCCCEEEEEECCCCCEEEEE
Confidence 1111110 0 344444 3343 23468999999999877653
No 153
>KOG0291|consensus
Probab=89.48 E-value=25 Score=35.30 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=73.0
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++.+.+.|+.++ .|-+||..++..... ....-..++++. ..++..+.... || +|-.+|.....=
T Consensus 361 Dgq~iaTG~eDg-----KVKvWn~~SgfC~vT--FteHts~Vt~v~f~~~g~~llssSL---DG----tVRAwDlkRYrN 426 (893)
T KOG0291|consen 361 DGQLIATGAEDG-----KVKVWNTQSGFCFVT--FTEHTSGVTAVQFTARGNVLLSSSL---DG----TVRAWDLKRYRN 426 (893)
T ss_pred CCcEEEeccCCC-----cEEEEeccCceEEEE--eccCCCceEEEEEEecCCEEEEeec---CC----eEEeeeecccce
Confidence 778888888663 577788777643211 122223333332 35566565555 55 578888766543
Q ss_pred eeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc-CCcCccCcceEEEECCEEEEEcCc
Q psy2979 276 QDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKS-PMKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 276 ~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
.+-=..|.|+...++++- .|.|.+.|+.+ .-.++.++.+|++-..+- ....|....+ ....+.+.+.|-+
T Consensus 427 fRTft~P~p~QfscvavD~sGelV~AG~~d-----~F~IfvWS~qTGqllDiLsGHEgPVs~l~-f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQD-----SFEIFVWSVQTGQLLDILSGHEGPVSGLS-FSPDGSLLASGSW 498 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCCEEEeeccc-----eEEEEEEEeecCeeeehhcCCCCcceeeE-EccccCeEEeccc
Confidence 332234555544444433 48899988764 456777888888754432 2222222111 1224556666665
No 154
>PTZ00421 coronin; Provisional
Probab=88.99 E-value=24 Score=34.42 Aligned_cols=151 Identities=9% Similarity=0.018 Sum_probs=71.6
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEE-----ccCCCCcccccEEEEe---CCEEEEEcCccccCCCCcceEEEEe
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSY-----IEPMKLAVTSPAVVAH---EGMLYVTGGAILEDGDGIEQVQRYN 269 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~~~l~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~v~~yd 269 (400)
++.+++.|+.+ .++..||..++.... +..+......-..+.+ ++.+++.||. |+ .+..||
T Consensus 87 d~~~LaSgS~D-----gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~---Dg----tVrIWD 154 (493)
T PTZ00421 87 DPQKLFTASED-----GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA---DM----VVNVWD 154 (493)
T ss_pred CCCEEEEEeCC-----CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC---CC----EEEEEE
Confidence 45566767655 357777776543211 1111111111112222 2467777877 54 688999
Q ss_pred CCCCcee-eccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE-EccCCcCccCcceEEEECCEEEE
Q psy2979 270 PKVNQWQ-DLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE-YKSPMKEKRYRPGIAVIDGKIYV 347 (400)
Q Consensus 270 ~~~~~W~-~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~lyv 347 (400)
..+.+-. .+...... -.......++.+++.|+. ...+..||+.+++-. .+......+........++..++
T Consensus 155 l~tg~~~~~l~~h~~~-V~sla~spdG~lLatgs~------Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 155 VERGKAVEVIKCHSDQ-ITSLEWNLDGSLLCTTSK------DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred CCCCeEEEEEcCCCCc-eEEEEEECCCCEEEEecC------CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 8766422 11111111 111112236778888876 467899999876522 22111111111111111333444
Q ss_pred EcCccCCCCCCCeEEEEECCCC
Q psy2979 348 LGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 348 ~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
..|. +. .....|..||+.+.
T Consensus 228 t~G~-s~-s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 228 TLGC-SK-SQQRQIMLWDTRKM 247 (493)
T ss_pred EEec-CC-CCCCeEEEEeCCCC
Confidence 4443 21 12357888998653
No 155
>KOG0278|consensus
Probab=88.65 E-value=15 Score=31.66 Aligned_cols=145 Identities=17% Similarity=0.112 Sum_probs=78.1
Q ss_pred CcEEEEEeccC--CCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCC
Q psy2979 109 INVIIAVGGED--DKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLK 186 (400)
Q Consensus 109 ~~~i~~~gg~~--~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~ 186 (400)
...+++.+... +......+..+|..+++-.+--.++.+... .-+..++. |..+.....+-..|+.+-.-.+--.||
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtS-lEvs~dG~-ilTia~gssV~Fwdaksf~~lKs~k~P 224 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTS-LEVSQDGR-ILTIAYGSSVKFWDAKSFGLLKSYKMP 224 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcc-eeeccCCC-EEEEecCceeEEeccccccceeeccCc
Confidence 35555554322 123345677888888765443333433332 12233555 666666666777777654333333344
Q ss_pred CcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE---EeCCEEEEEcCccccCCCC
Q psy2979 187 FDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV---AHEGMLYVTGGAILEDGDG 261 (400)
Q Consensus 187 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~---~~~~~iyv~GG~~~~~~~~ 261 (400)
..-. ++.+ +..+||.||.+. .+++||-.|+.= +........+.-.+ .-+|.+|..|.. ||.
T Consensus 225 ~nV~---SASL~P~k~~fVaGged~-----~~~kfDy~TgeE--i~~~nkgh~gpVhcVrFSPdGE~yAsGSE---DGT- 290 (334)
T KOG0278|consen 225 CNVE---SASLHPKKEFFVAGGEDF-----KVYKFDYNTGEE--IGSYNKGHFGPVHCVRFSPDGELYASGSE---DGT- 290 (334)
T ss_pred cccc---cccccCCCceEEecCcce-----EEEEEeccCCce--eeecccCCCCceEEEEECCCCceeeccCC---Cce-
Confidence 3222 2223 558999999663 477888888752 22222333333222 248999999988 763
Q ss_pred cceEEEEeC
Q psy2979 262 IEQVQRYNP 270 (400)
Q Consensus 262 ~~~v~~yd~ 270 (400)
-.+|+-.|
T Consensus 291 -irlWQt~~ 298 (334)
T KOG0278|consen 291 -IRLWQTTP 298 (334)
T ss_pred -EEEEEecC
Confidence 34455444
No 156
>KOG1036|consensus
Probab=87.44 E-value=20 Score=31.77 Aligned_cols=155 Identities=16% Similarity=0.207 Sum_probs=83.3
Q ss_pred eEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEEC
Q psy2979 215 SVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALD 294 (400)
Q Consensus 215 ~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 294 (400)
++-.||..++.-. -.+.....--.++..+..=.++||. ++ .+-+||..+..=..+..-..+.....-. ..
T Consensus 36 slrlYdv~~~~l~--~~~~~~~plL~c~F~d~~~~~~G~~---dg----~vr~~Dln~~~~~~igth~~~i~ci~~~-~~ 105 (323)
T KOG1036|consen 36 SLRLYDVPANSLK--LKFKHGAPLLDCAFADESTIVTGGL---DG----QVRRYDLNTGNEDQIGTHDEGIRCIEYS-YE 105 (323)
T ss_pred cEEEEeccchhhh--hheecCCceeeeeccCCceEEEecc---Cc----eEEEEEecCCcceeeccCCCceEEEEee-cc
Confidence 4667777766211 1111111112333445545566777 55 7999999988777765433332211111 23
Q ss_pred CeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc----
Q psy2979 295 SCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS---- 370 (400)
Q Consensus 295 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~---- 370 (400)
...+|.||+ -.++..+|+.... .......+..-+++.+ .+...|+|+. ...|..||..+..
T Consensus 106 ~~~vIsgsW------D~~ik~wD~R~~~--~~~~~d~~kkVy~~~v-~g~~LvVg~~------~r~v~iyDLRn~~~~~q 170 (323)
T KOG1036|consen 106 VGCVISGSW------DKTIKFWDPRNKV--VVGTFDQGKKVYCMDV-SGNRLVVGTS------DRKVLIYDLRNLDEPFQ 170 (323)
T ss_pred CCeEEEccc------CccEEEEeccccc--cccccccCceEEEEec-cCCEEEEeec------CceEEEEEcccccchhh
Confidence 455678888 5688999987622 1112222333333433 4455566665 2578899986632
Q ss_pred ---------EEEecCCCCCCCceeeEEEcccccc
Q psy2979 371 ---------WEIMSHLPSARSWLGCVPLQIHKSQ 395 (400)
Q Consensus 371 ---------W~~~~~~~~~r~~~~~~~~~~~~~~ 395 (400)
=+.+.-.| .+.++.+-.+++++.+
T Consensus 171 ~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 171 RRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAV 203 (323)
T ss_pred hccccceeEEEEEEEec-CCCceEEEeecceEEE
Confidence 12222344 6667777777776543
No 157
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=87.14 E-value=12 Score=34.77 Aligned_cols=98 Identities=11% Similarity=0.041 Sum_probs=58.9
Q ss_pred CCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc-----Cc--cCcceEEEECCE
Q psy2979 272 VNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK-----EK--RYRPGIAVIDGK 344 (400)
Q Consensus 272 ~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-----~~--~~~~~~~~~~~~ 344 (400)
.+.|+.+.. .....-.++.++|++|++.- ...++.++.+-. -+++++.. .+ ....-.+...|+
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~-------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~Gd 258 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS-------IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGE 258 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC-------CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCE
Confidence 489999964 33345678888999999942 346777764321 12222110 01 112235566788
Q ss_pred EEEEcCccCCC-------------CCCCeEEEEECCCCcEEEecCCCC
Q psy2979 345 IYVLGGEEGWD-------------GYHDSIECYDVDNDSWEIMSHLPS 379 (400)
Q Consensus 345 lyv~GG~~~~~-------------~~~~~v~~yd~~~~~W~~~~~~~~ 379 (400)
|+++....... ...-.|+..|.+..+|.++..|..
T Consensus 259 LLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd 306 (373)
T PLN03215 259 LYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGD 306 (373)
T ss_pred EEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCC
Confidence 99987641110 112356667988999999988753
No 158
>KOG4682|consensus
Probab=87.06 E-value=0.39 Score=43.67 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=63.3
Q ss_pred HHHhcCceeceEEEECCeEEehhhHHHhhcCccccccc----------eee----cCCCCHHHH---HHHhhhcccccCc
Q psy2979 10 EARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVLE----------TIR----LPQLSPYFL---HDCVEQCAIIKNN 72 (400)
Q Consensus 10 ~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m~----------~vr----l~~l~~~~l---~~~i~~~~l~~~~ 72 (400)
.|-.+|.=.||+|.+=|.+-.-||.-| ..|+||.+|. -|. =|.++...| ..-+|.+++.++.
T Consensus 62 ~lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l 140 (488)
T KOG4682|consen 62 NLFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKL 140 (488)
T ss_pred HHHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccH
Confidence 334588889999999999999999999 6789999982 122 246666644 3457789998888
Q ss_pred hhHHHHHHHHHhcCCCccccc
Q psy2979 73 PQCAQLVEEAKLFHLLPDRRS 93 (400)
Q Consensus 73 ~~c~~~l~~a~~~~~~~~~~~ 93 (400)
.....++.+|-.+|+....+.
T Consensus 141 ~dv~gvlAaA~~lqldgl~qr 161 (488)
T KOG4682|consen 141 SDVVGVLAAACLLQLDGLIQR 161 (488)
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 888889999988877665544
No 159
>KOG0643|consensus
Probab=86.28 E-value=22 Score=31.02 Aligned_cols=167 Identities=15% Similarity=0.066 Sum_probs=78.4
Q ss_pred ccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE-----eecCEEEEEECCCCC--------eEEccCCCCcc
Q psy2979 123 VLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL-----DIVDIVYVAASMHKI--------LHSLGSLKFDF 189 (400)
Q Consensus 123 ~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~-----~~~~~~~~yd~~~~~--------w~~~~~~~~~r 189 (400)
..+++..+|..+++-.-.-..+.+......-.-++. +.+. .....+..||..... ...++ .+-
T Consensus 72 AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~-~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~---t~~ 147 (327)
T KOG0643|consen 72 ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNL-ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP---TPD 147 (327)
T ss_pred ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcE-EEEEehhhcCcceEEEEEEccCChhhhcccCceEEec---CCc
Confidence 345677888888874333333333332222222333 2222 445567778876332 22222 222
Q ss_pred eeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCce-EEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEE
Q psy2979 190 DVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEW-SYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQ 266 (400)
Q Consensus 190 ~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~ 266 (400)
.....+.. -++..+.|+.++ ++.+||..++.= ..........-.--.-.-+...|+.|.. |. ..-
T Consensus 148 skit~a~Wg~l~~~ii~Ghe~G-----~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~---Dt----tak 215 (327)
T KOG0643|consen 148 SKITSALWGPLGETIIAGHEDG-----SISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK---DT----TAK 215 (327)
T ss_pred cceeeeeecccCCEEEEecCCC-----cEEEEEcccCceeeechhhhccccccccccCCcceEEeccc---Cc----cce
Confidence 22222322 345555566553 588889887632 1111111000000001124456777766 43 234
Q ss_pred EEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCC
Q psy2979 267 RYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHA 305 (400)
Q Consensus 267 ~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 305 (400)
.+|..+-+-.+--....|...+++.-+.+++.+-||.+.
T Consensus 216 l~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred eeeccceeeEEEeeecccccceecccccceEEecCCcee
Confidence 445544443333222344445556666889988888654
No 160
>PRK04043 tolB translocation protein TolB; Provisional
Probab=86.21 E-value=32 Score=32.80 Aligned_cols=192 Identities=9% Similarity=-0.038 Sum_probs=105.4
Q ss_pred cCEEEEEECCCCCeEEccCCCCcceeeeEEEECC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH 244 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~ 244 (400)
...+|.+|+.+++=+.+...+.. .......-++ +|.+.-...+ ...++.+|..+++++.+.+.+..-......--
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPD 287 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNYPGIDVNGNFVED 287 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccCCCccCccEECCC
Confidence 46789999988876666543221 1111122244 5555433222 36799999999999888765432222222223
Q ss_pred CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCe-EEEEcCcCCCC--CCCCeEEEEECCCC
Q psy2979 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSC-IYVLGGWHAST--ENTNRVECYHIAEN 321 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~--~~~~~v~~yd~~~~ 321 (400)
+.+||..... .+ ...++.+|..+...+++..-.. ... ...-+|+ |.......... .....++.+|+.++
T Consensus 288 G~~I~F~Sdr---~g--~~~Iy~~dl~~g~~~rlt~~g~--~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 288 DKRIVFVSDR---LG--YPNIFMKKLNSGSVEQVVFHGK--NNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred CCEEEEEECC---CC--CceEEEEECCCCCeEeCccCCC--cCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 4567776543 22 3589999999888877653211 122 2333454 44433222111 01358999999999
Q ss_pred eEEEccCCcCccCcceEEEECCE-EEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 322 TWEYKSPMKEKRYRPGIAVIDGK-IYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 322 ~W~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
.+..+.... ....-...-||+ |+..... .....++.++...+.=..++
T Consensus 360 ~~~~LT~~~--~~~~p~~SPDG~~I~f~~~~----~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 360 YIRRLTANG--VNQFPRFSSDGGSIMFIKYL----GNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CeEECCCCC--CcCCeEECCCCCEEEEEEcc----CCcEEEEEEecCCCeeEEee
Confidence 998887632 122122233555 4444322 22356888888776544443
No 161
>PRK10115 protease 2; Provisional
Probab=85.97 E-value=44 Score=34.21 Aligned_cols=240 Identities=10% Similarity=-0.035 Sum_probs=115.2
Q ss_pred CcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-e-----ecCEEEEEECCCCCe--EEccCCCCccee
Q psy2979 121 KVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-D-----IVDIVYVAASMHKIL--HSLGSLKFDFDV 191 (400)
Q Consensus 121 ~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~-----~~~~~~~yd~~~~~w--~~~~~~~~~r~~ 191 (400)
+....++.+.|+.++... ...++..+ ..++.. ++..+|.. . ....+++++..++.- ..+-.-+.....
T Consensus 149 G~E~~~l~v~d~~tg~~l-~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~ 225 (686)
T PRK10115 149 SRRQYGIRFRNLETGNWY-PELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFY 225 (686)
T ss_pred CcEEEEEEEEECCCCCCC-CccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEE
Confidence 334445666677665411 01111112 234444 44425554 1 224677788776621 111110111222
Q ss_pred eeEEEE-CCEEEEEcccCCCCCCCeEEEEeC--CCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEE
Q psy2979 192 SGIAML-DGFVYAVGGWDGSCRLDSVERYDP--TKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY 268 (400)
Q Consensus 192 ~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~--~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 268 (400)
...... +++..++..... ..+.++.|+. .+..|..+.+.+.... +.....++.+|+.--. ++. ...+...
T Consensus 226 ~~~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ly~~tn~---~~~-~~~l~~~ 298 (686)
T PRK10115 226 VSLHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEPFVFLPRRKDHE-YSLDHYQHRFYLRSNR---HGK-NFGLYRT 298 (686)
T ss_pred EEEEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCceEEEECCCCCE-EEEEeCCCEEEEEEcC---CCC-CceEEEe
Confidence 222222 333333433322 2355777773 2344433333232222 2333456888887533 222 3356666
Q ss_pred eCC-CCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc-CCcCccCcceEE-EE-CCE
Q psy2979 269 NPK-VNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKS-PMKEKRYRPGIA-VI-DGK 344 (400)
Q Consensus 269 d~~-~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~-~~-~~~ 344 (400)
+.. ...|+.+-+.......-.+...++.+++..-.++ ...++.+|..++....+. +.|......+.. .. ++.
T Consensus 299 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g----~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (686)
T PRK10115 299 RVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRG----LTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSR 374 (686)
T ss_pred cCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCC----EEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCce
Confidence 766 5789888655333333344555787777754322 457888887666655554 222111000000 01 134
Q ss_pred EEEEcCccCCCCCCCeEEEEECCCCcEEEecCC
Q psy2979 345 IYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHL 377 (400)
Q Consensus 345 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 377 (400)
+++.- .+......++.||+.+++|+.+...
T Consensus 375 ~~~~~---ss~~~P~~~y~~d~~~~~~~~l~~~ 404 (686)
T PRK10115 375 LRYGY---SSMTTPDTLFELDMDTGERRVLKQT 404 (686)
T ss_pred EEEEE---ecCCCCCEEEEEECCCCcEEEEEec
Confidence 44332 2233457899999999999887643
No 162
>PRK01742 tolB translocation protein TolB; Provisional
Probab=85.51 E-value=35 Score=32.61 Aligned_cols=139 Identities=13% Similarity=0.121 Sum_probs=70.5
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeCCE-EEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGM-LYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
..++.+|..+++-+.+...+.... .....-+++ |++.... ++ ...++.+|..+.....+..-... .......
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~---~g--~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wS 300 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSK---DG--VLNIYVMGANGGTPSQLTSGAGN-NTEPSWS 300 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEec---CC--cEEEEEEECCCCCeEeeccCCCC-cCCEEEC
Confidence 568889998887666655443221 122223554 4443322 33 23688899888777666432211 1112222
Q ss_pred ECCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECC-EEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 293 LDSC-IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDG-KIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 293 ~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
-+++ |+......+ ...++.++..+..-..+.. .. ... ...-+| .|++.++ +.++.+|+.+++
T Consensus 301 pDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~--~~-~~~-~~SpDG~~ia~~~~--------~~i~~~Dl~~g~ 364 (429)
T PRK01742 301 PDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG--RG-YSA-QISADGKTLVMING--------DNVVKQDLTSGS 364 (429)
T ss_pred CCCCEEEEEECCCC----CceEEEEECCCCCeEEecC--CC-CCc-cCCCCCCEEEEEcC--------CCEEEEECCCCC
Confidence 3554 444432211 3467888776554333321 11 111 112244 4544433 257788998888
Q ss_pred EEEec
Q psy2979 371 WEIMS 375 (400)
Q Consensus 371 W~~~~ 375 (400)
++.+.
T Consensus 365 ~~~lt 369 (429)
T PRK01742 365 TEVLS 369 (429)
T ss_pred eEEec
Confidence 87653
No 163
>PTZ00420 coronin; Provisional
Probab=85.00 E-value=43 Score=33.26 Aligned_cols=150 Identities=11% Similarity=0.235 Sum_probs=73.1
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeec
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL 278 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~ 278 (400)
.+++.||.+ ..+..||+.+++=.. .+.....-.+++ ..+|.+++.++. + ..+..||+.+.+= +
T Consensus 139 ~iLaSgS~D-----gtIrIWDl~tg~~~~--~i~~~~~V~SlswspdG~lLat~s~---D----~~IrIwD~Rsg~~--i 202 (568)
T PTZ00420 139 YIMCSSGFD-----SFVNIWDIENEKRAF--QINMPKKLSSLKWNIKGNLLSGTCV---G----KHMHIIDPRKQEI--A 202 (568)
T ss_pred eEEEEEeCC-----CeEEEEECCCCcEEE--EEecCCcEEEEEECCCCCEEEEEec---C----CEEEEEECCCCcE--E
Confidence 455666655 357888988764211 111111111222 236778887776 4 3689999976542 2
Q ss_pred cCCCC---CceeeeEE----EECCeEEEEcCcCCCCCCCCeEEEEECCC-CeEEEccCCcCccCcceE-EEE---CCEEE
Q psy2979 279 APMLI---PRSGAAIC----ALDSCIYVLGGWHASTENTNRVECYHIAE-NTWEYKSPMKEKRYRPGI-AVI---DGKIY 346 (400)
Q Consensus 279 ~~~~~---~r~~~~~~----~~~~~iyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~~~~~~~-~~~---~~~ly 346 (400)
..+.. .+..-... .-++..++.+|.+... ...+..||..+ ..-...-.+.. ....+ ... .+.+|
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~--~R~VkLWDlr~~~~pl~~~~ld~--~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN--MREMKLWDLKNTTSALVTMSIDN--ASAPLIPHYDESTGLIY 278 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCC--ccEEEEEECCCCCCceEEEEecC--CccceEEeeeCCCCCEE
Confidence 21111 11111111 1244566666654422 24788899874 22111111111 00111 112 47888
Q ss_pred EEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 347 VLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 347 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
+.|.. + ..|..|+...+.-..+.
T Consensus 279 lsGkG-D-----~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 279 LIGKG-D-----GNCRYYQHSLGSIRKVN 301 (568)
T ss_pred EEEEC-C-----CeEEEEEccCCcEEeec
Confidence 88854 2 46788888776544443
No 164
>KOG0296|consensus
Probab=84.96 E-value=30 Score=31.48 Aligned_cols=143 Identities=18% Similarity=0.199 Sum_probs=78.6
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccc--ccEEEEeCCEEEEEcCccccCCCCcceEEEE--eCCCC
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVT--SPAVVAHEGMLYVTGGAILEDGDGIEQVQRY--NPKVN 273 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~--~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y--d~~~~ 273 (400)
++.+.+.||-+ +..+.|+..++.|-. .++.-.. -.....+++.+.+.|+. +| .+..+ +....
T Consensus 75 ~~~l~aTGGgD-----D~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdm---sG----~v~v~~~stg~~ 140 (399)
T KOG0296|consen 75 NNNLVATGGGD-----DLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDM---SG----KVLVFKVSTGGE 140 (399)
T ss_pred CCceEEecCCC-----ceEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCC---Cc----cEEEEEcccCce
Confidence 45566677755 446778888887532 2221111 12334568899999988 55 34444 44455
Q ss_pred ceeeccCCCCC--ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCc
Q psy2979 274 QWQDLAPMLIP--RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 274 ~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
+|....++..- ...|. ...|++.|-. ..++|.|...++.-.++-+-+..+...+...-+||-.+.|-.
T Consensus 141 ~~~~~~e~~dieWl~WHp----~a~illAG~~------DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 141 QWKLDQEVEDIEWLKWHP----RAHILLAGST------DGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred EEEeecccCceEEEEecc----cccEEEeecC------CCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec
Confidence 57665322211 11111 3567777755 457999988775333332223333334444446776666543
Q ss_pred cCCCCCCCeEEEEECCCCc
Q psy2979 352 EGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~~~ 370 (400)
...|.++||.+.+
T Consensus 211 ------dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 211 ------DGTIIVWNPKTGQ 223 (399)
T ss_pred ------CceEEEEecCCCc
Confidence 2357778887763
No 165
>KOG0649|consensus
Probab=84.41 E-value=26 Score=30.17 Aligned_cols=149 Identities=15% Similarity=0.200 Sum_probs=80.5
Q ss_pred CCeEEccCCCC-----cceee-eEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe--CCEE
Q psy2979 177 KILHSLGSLKF-----DFDVS-GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH--EGML 248 (400)
Q Consensus 177 ~~w~~~~~~~~-----~r~~~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~--~~~i 248 (400)
..|+..+||.. |-.+. .+.--.|.|+..||. .-++..|.++++.+..=. ...-+-|+++.- +++|
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qi 171 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQI 171 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcce
Confidence 34777776643 32222 222236888888883 347888999998754311 123344555542 4455
Q ss_pred EEEcCccccCCCCcceEEEEeCCCCceeecc------CCCCCcee--eeEEEECCeEEEEcCcCCCCCCCCeEEEEECCC
Q psy2979 249 YVTGGAILEDGDGIEQVQRYNPKVNQWQDLA------PMLIPRSG--AAICALDSCIYVLGGWHASTENTNRVECYHIAE 320 (400)
Q Consensus 249 yv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~------~~~~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~ 320 (400)
+ .|+. || .+-.+|.+|.+=.++- ....|..+ .++...+....+.||- .....++...
T Consensus 172 l-sG~E---DG----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-------p~lslwhLrs 236 (325)
T KOG0649|consen 172 L-SGAE---DG----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-------PKLSLWHLRS 236 (325)
T ss_pred e-ecCC---Cc----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-------CceeEEeccC
Confidence 3 5666 65 6888888887754441 12222222 3555556677777763 3455566665
Q ss_pred CeEEEccCCcCccCcceEEEECCEEEEEcC
Q psy2979 321 NTWEYKSPMKEKRYRPGIAVIDGKIYVLGG 350 (400)
Q Consensus 321 ~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG 350 (400)
..-+.+-+.|.+ -+ .+.+.++..++||
T Consensus 237 se~t~vfpipa~--v~-~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 237 SESTCVFPIPAR--VH-LVDFVDDCVLIGG 263 (325)
T ss_pred CCceEEEecccc--ee-EeeeecceEEEec
Confidence 555554444432 22 3334444444444
No 166
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=84.36 E-value=54 Score=33.91 Aligned_cols=164 Identities=12% Similarity=0.250 Sum_probs=82.9
Q ss_pred EEEECCEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCCcc-ccc----E------------------EEEeCCEE
Q psy2979 194 IAMLDGFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKLAV-TSP----A------------------VVAHEGML 248 (400)
Q Consensus 194 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~-~~~----~------------------~~~~~~~i 248 (400)
-.++++.||+.... ..+..+|..|+ .|+.-+..+... ..+ + .+.++++|
T Consensus 190 Plvvgg~lYv~t~~------~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV 263 (764)
T TIGR03074 190 PLKVGDTLYLCTPH------NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRI 263 (764)
T ss_pred CEEECCEEEEECCC------CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEE
Confidence 35568999997542 45777777766 477655433210 000 1 12344566
Q ss_pred EEEcCccccCCCCcceEEEEeCCCCc--eee-----------ccCCCCC--ceeeeEEEECCeEEEEcCcCCC-----CC
Q psy2979 249 YVTGGAILEDGDGIEQVQRYNPKVNQ--WQD-----------LAPMLIP--RSGAAICALDSCIYVLGGWHAS-----TE 308 (400)
Q Consensus 249 yv~GG~~~~~~~~~~~v~~yd~~~~~--W~~-----------~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~-----~~ 308 (400)
|+. .. ++ .+..+|..|.+ |.. +++.+.. .....-++.++.||+ |+.... ..
T Consensus 264 ~~~-T~---Dg----~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~~~ 334 (764)
T TIGR03074 264 ILP-TS---DA----RLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTDEP 334 (764)
T ss_pred EEe-cC---CC----eEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-EecccccccccCC
Confidence 653 22 22 46666665554 432 1122211 123334566777776 432111 12
Q ss_pred CCCeEEEEECCCCe--EEEccCCc-------Cc----cCcc---eEEEE---CCEEEEEcCcc-----------CCCCCC
Q psy2979 309 NTNRVECYHIAENT--WEYKSPMK-------EK----RYRP---GIAVI---DGKIYVLGGEE-----------GWDGYH 358 (400)
Q Consensus 309 ~~~~v~~yd~~~~~--W~~~~~~~-------~~----~~~~---~~~~~---~~~lyv~GG~~-----------~~~~~~ 358 (400)
...+..||..|++ |..-..-| .. +... ...++ .|.+|+--|.. ..+.+.
T Consensus 335 -~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~ 413 (764)
T TIGR03074 335 -SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYS 413 (764)
T ss_pred -CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCccccc
Confidence 4679999999885 76532111 10 0100 12233 35677743320 112356
Q ss_pred CeEEEEECCCCc--EEE
Q psy2979 359 DSIECYDVDNDS--WEI 373 (400)
Q Consensus 359 ~~v~~yd~~~~~--W~~ 373 (400)
+++...|++|++ |..
T Consensus 414 ~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 414 SSLVALDATTGKERWVF 430 (764)
T ss_pred ceEEEEeCCCCceEEEe
Confidence 889999999875 765
No 167
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=84.09 E-value=27 Score=30.28 Aligned_cols=150 Identities=15% Similarity=0.226 Sum_probs=75.2
Q ss_pred eeEEEECCeEEEEE--------eecCEEEEEE---CCCCCeEE--ccCCCC-------cceeeeEEEECCEEEEEcccCC
Q psy2979 150 HGLVVSGRNTIYCL--------DIVDIVYVAA---SMHKILHS--LGSLKF-------DFDVSGIAMLDGFVYAVGGWDG 209 (400)
Q Consensus 150 ~~~~~~~~~~iyv~--------~~~~~~~~yd---~~~~~w~~--~~~~~~-------~r~~~~~~~~~~~iyv~GG~~~ 209 (400)
.++-+++|. +|.+ ......+.|+ ...+.|+. ++..+. .-.-|+.+.+++.-|.+|=.++
T Consensus 78 mSMGv~~NR-Lfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnG 156 (367)
T PF12217_consen 78 MSMGVVGNR-LFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNG 156 (367)
T ss_dssp B-EEEETTE-EEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-
T ss_pred eeeeeecce-eeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccC
Confidence 345678999 9888 2223344454 23566864 333333 3567888889888889987776
Q ss_pred CCCCCeEEE--EeCCC----C-ceEEcc-CCCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccC
Q psy2979 210 SCRLDSVER--YDPTK----N-EWSYIE-PMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAP 280 (400)
Q Consensus 210 ~~~~~~v~~--yd~~~----~-~W~~~~-~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~ 280 (400)
+.....+-. |...- . .=..++ .....-...++-..+|.+|++--.+ .+.. -+.+.+-+.....|+.+.-
T Consensus 157 D~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt--~~~~~GS~L~rs~d~G~~w~slrf 234 (367)
T PF12217_consen 157 DVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGT--LPTNPGSSLHRSDDNGQNWSSLRF 234 (367)
T ss_dssp SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES---TTS---EEEEESSTTSS-EEEE-
T ss_pred CCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCc--CCCCCcceeeeecccCCchhhccc
Confidence 544444332 21110 0 111222 2223334445567899999985332 2222 3466777777888998852
Q ss_pred C-CCCceeeeEEEECCeEEEEcC
Q psy2979 281 M-LIPRSGAAICALDSCIYVLGG 302 (400)
Q Consensus 281 ~-~~~r~~~~~~~~~~~iyv~GG 302 (400)
. ..-....-.+..++.||++|-
T Consensus 235 p~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 235 PNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp TT---SS---EEEETTEEEEEEE
T ss_pred cccccccCCCceeeCCEEEEEec
Confidence 2 222333445677999999985
No 168
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=84.05 E-value=56 Score=33.82 Aligned_cols=35 Identities=11% Similarity=-0.011 Sum_probs=25.9
Q ss_pred eeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccCC
Q psy2979 150 HGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSL 185 (400)
Q Consensus 150 ~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~ 185 (400)
.+-+++++. +|+....+.++.+|..+++ |+.-+..
T Consensus 188 ~TPlvvgg~-lYv~t~~~~V~ALDa~TGk~lW~~d~~~ 224 (764)
T TIGR03074 188 ATPLKVGDT-LYLCTPHNKVIALDAATGKEKWKFDPKL 224 (764)
T ss_pred cCCEEECCE-EEEECCCCeEEEEECCCCcEEEEEcCCC
Confidence 344667888 9999777888999988765 8765543
No 169
>KOG2321|consensus
Probab=83.89 E-value=10 Score=36.64 Aligned_cols=104 Identities=16% Similarity=0.085 Sum_probs=58.9
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEE-------ccCC
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSY-------IEPM 232 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-------~~~l 232 (400)
||++.....++++|+..++|-.-=....+--.+....--+.|+++||.++ .|+.|||.+.+-.. +++.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g-----~VEfwDpR~ksrv~~l~~~~~v~s~ 222 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG-----VVEFWDPRDKSRVGTLDAASSVNSH 222 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCc-----eEEEecchhhhhheeeecccccCCC
Confidence 88888889999999999998532111211111111112346788888664 58999998775321 2223
Q ss_pred CCccccc--EEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 233 KLAVTSP--AVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 233 ~~~~~~~--~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
|..-... ++..+ |+-|-+.-|.. + ..++.||..+.+
T Consensus 223 pg~~~~~svTal~F~d~gL~~aVGts--~----G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 223 PGGDAAPSVTALKFRDDGLHVAVGTS--T----GSVLIYDLRASK 261 (703)
T ss_pred ccccccCcceEEEecCCceeEEeecc--C----CcEEEEEcccCC
Confidence 3222222 33333 32444443432 3 379999987664
No 170
>PTZ00420 coronin; Provisional
Probab=83.26 E-value=51 Score=32.75 Aligned_cols=106 Identities=8% Similarity=0.042 Sum_probs=53.1
Q ss_pred CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeE-EEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 246 GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAI-CALDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
..+++.||. ++ .+..||..+.+=. ..+..+....++ ...+|.+++.++. ...+..||+.+++-.
T Consensus 138 ~~iLaSgS~---Dg----tIrIWDl~tg~~~--~~i~~~~~V~SlswspdG~lLat~s~------D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 138 YYIMCSSGF---DS----FVNIWDIENEKRA--FQINMPKKLSSLKWNIKGNLLSGTCV------GKHMHIIDPRKQEIA 202 (568)
T ss_pred CeEEEEEeC---CC----eEEEEECCCCcEE--EEEecCCcEEEEEECCCCCEEEEEec------CCEEEEEECCCCcEE
Confidence 345667776 44 6888998766411 111111111222 2236788777765 457999999876532
Q ss_pred E-ccCCcCccCcceEE--E--ECCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 325 Y-KSPMKEKRYRPGIA--V--IDGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 325 ~-~~~~~~~~~~~~~~--~--~~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
. +......+..-... . -++..++.+|. +. .....|.+||..+
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~-d~-~~~R~VkLWDlr~ 249 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGF-SK-NNMREMKLWDLKN 249 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEc-CC-CCccEEEEEECCC
Confidence 1 11111111000111 1 24455666665 32 1234688999874
No 171
>KOG2048|consensus
Probab=82.50 E-value=54 Score=32.47 Aligned_cols=197 Identities=11% Similarity=0.074 Sum_probs=99.0
Q ss_pred eecCEEEEEECCCCCeEEccCC--CCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCc------------eEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSL--KFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNE------------WSY 228 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~--~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~------------W~~ 228 (400)
.....++.||+.. .|...+-+ +.-|.--+++.. ++++|-+|+.. ++--||+.+.+ |+-
T Consensus 44 Rt~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg------~i~EwDl~~lk~~~~~d~~gg~IWsi 116 (691)
T KOG2048|consen 44 RTDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSG------SITEWDLHTLKQKYNIDSNGGAIWSI 116 (691)
T ss_pred ccCCcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecCCc------eEEEEecccCceeEEecCCCcceeEE
Confidence 5556789999986 68766544 445666677777 78999988743 34444444332 332
Q ss_pred ccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEE-EEcCcCCC
Q psy2979 229 IEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIY-VLGGWHAS 306 (400)
Q Consensus 229 ~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy-v~GG~~~~ 306 (400)
. --|.. .-.++. .+|.+|.+.+. . .+..|+. .++......-....+.... ++||..+
T Consensus 117 a-i~p~~--~~l~IgcddGvl~~~s~~---p-----~~I~~~r---------~l~rq~sRvLslsw~~~~~~i~~Gs~D- 175 (691)
T KOG2048|consen 117 A-INPEN--TILAIGCDDGVLYDFSIG---P-----DKITYKR---------SLMRQKSRVLSLSWNPTGTKIAGGSID- 175 (691)
T ss_pred E-eCCcc--ceEEeecCCceEEEEecC---C-----ceEEEEe---------ecccccceEEEEEecCCccEEEecccC-
Confidence 1 11111 111111 24455555443 1 2222322 2222222222333344444 6666521
Q ss_pred CCCCCeEEEEECCCCeEEEccCCcCcc-------CcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC
Q psy2979 307 TENTNRVECYHIAENTWEYKSPMKEKR-------YRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS 379 (400)
Q Consensus 307 ~~~~~~v~~yd~~~~~W~~~~~~~~~~-------~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 379 (400)
..+-++|..+++=-.+-.|...+ ...++..+.+...+.|-. ...|..+|+...+-.+--.. .
T Consensus 176 ----g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS------~G~V~FWd~~~gTLiqS~~~-h 244 (691)
T KOG2048|consen 176 ----GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDS------AGTVTFWDSIFGTLIQSHSC-H 244 (691)
T ss_pred ----ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecC------CceEEEEcccCcchhhhhhh-h
Confidence 23667777766544432222211 122344555556666643 34688888887653332111 1
Q ss_pred CCCceeeEEEcccccccccC
Q psy2979 380 ARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 380 ~r~~~~~~~~~~~~~~~~~~ 399 (400)
.-.-.++++-++...+|..|
T Consensus 245 ~adVl~Lav~~~~d~vfsaG 264 (691)
T KOG2048|consen 245 DADVLALAVADNEDRVFSAG 264 (691)
T ss_pred hcceeEEEEcCCCCeEEEcc
Confidence 22345566667777777766
No 172
>KOG0315|consensus
Probab=81.86 E-value=33 Score=29.63 Aligned_cols=256 Identities=12% Similarity=0.099 Sum_probs=125.9
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCccccee-eeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISK-HGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD 188 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~-~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~ 188 (400)
..+++..|++ .++..+...+++...- ++.+-+. ........+..........+..||..+++=.++.....+
T Consensus 10 ~viLvsA~YD-----hTIRfWqa~tG~C~rT--iqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 10 PVILVSAGYD-----HTIRFWQALTGICSRT--IQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred ceEEEeccCc-----ceeeeeehhcCeEEEE--EecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEecc
Confidence 4677777766 4566666666654321 1111111 011111122122224456788999988763333333333
Q ss_pred ceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCE-EEEEcCccccCCCCcceE
Q psy2979 189 FDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGM-LYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 189 r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~v 265 (400)
+.+-.++-+ +++-...||.++ ++-++|...-+-+..=..+.+. -+++..-++ =.+.|-. ...+
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDg-----t~kIWdlR~~~~qR~~~~~spV--n~vvlhpnQteLis~dq-------sg~i 148 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDG-----TVKIWDLRSLSCQRNYQHNSPV--NTVVLHPNQTELISGDQ-------SGNI 148 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCc-----eEEEEeccCcccchhccCCCCc--ceEEecCCcceEEeecC-------CCcE
Confidence 344444333 677667777664 4666777652222111111111 122222222 2233333 3479
Q ss_pred EEEeCCCCceeeccCCCCCce-eeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeE-EEccCCc--CccCcceE-E
Q psy2979 266 QRYNPKVNQWQDLAPMLIPRS-GAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTW-EYKSPMK--EKRYRPGI-A 339 (400)
Q Consensus 266 ~~yd~~~~~W~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~--~~~~~~~~-~ 339 (400)
+.+|..++.-+.. .+|..-. --.+++. +|+..+ ++.+ ....++++..+++- +.+.|.. ..+.+|.. +
T Consensus 149 rvWDl~~~~c~~~-liPe~~~~i~sl~v~~dgsml~-a~nn-----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C 221 (311)
T KOG0315|consen 149 RVWDLGENSCTHE-LIPEDDTSIQSLTVMPDGSMLA-AANN-----KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRC 221 (311)
T ss_pred EEEEccCCccccc-cCCCCCcceeeEEEcCCCcEEE-EecC-----CccEEEEEccCCCccccceEhhheecccceEEEE
Confidence 9999999876654 2333222 2233333 555444 3322 23566666655332 1222221 23344432 2
Q ss_pred EE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC-CCCceeeEEEcccccccccCC
Q psy2979 340 VI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS-ARSWLGCVPLQIHKSQFVDKS 400 (400)
Q Consensus 340 ~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~ 400 (400)
.+ ++|..+..+. -..+.+++.++. .+.-..+.. .|-.-.+++-.+..|++.+++
T Consensus 222 ~lSPd~k~lat~ss------dktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 222 LLSPDVKYLATCSS------DKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASS 278 (311)
T ss_pred EECCCCcEEEeecC------CceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCC
Confidence 23 6776666654 256788887776 222222222 356677888888888888775
No 173
>KOG0640|consensus
Probab=81.74 E-value=33 Score=30.58 Aligned_cols=135 Identities=9% Similarity=0.081 Sum_probs=73.5
Q ss_pred CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCce--eeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 246 GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRS--GAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
..|.+.|.. | +.+-.||...-.-.+.-..-.... ..-.+.-.|...++|-. ...+..||..|-+.
T Consensus 184 e~ILiS~sr---D----~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd------Hp~~rlYdv~T~Qc 250 (430)
T KOG0640|consen 184 ETILISGSR---D----NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD------HPTLRLYDVNTYQC 250 (430)
T ss_pred hheEEeccC---C----CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC------CCceeEEeccceeE
Confidence 567777766 4 367777765433211100000000 01112225666666643 56888999988887
Q ss_pred EEccCCcCccCcce-EEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEE-EecCCCCCCCceeeEEEcccccccccC
Q psy2979 324 EYKSPMKEKRYRPG-IAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWE-IMSHLPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 324 ~~~~~~~~~~~~~~-~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
..-+.........- .+-+ .++||+.|.. + ..|-.||-.+++-. .++.-..+-.-+++.+-.|.+|++-.|
T Consensus 251 fvsanPd~qht~ai~~V~Ys~t~~lYvTaSk-D-----G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG 324 (430)
T KOG0640|consen 251 FVSANPDDQHTGAITQVRYSSTGSLYVTASK-D-----GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG 324 (430)
T ss_pred eeecCcccccccceeEEEecCCccEEEEecc-C-----CcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC
Confidence 65554223332222 2223 6899999977 3 25667776665322 223333444556667778888887766
No 174
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=81.56 E-value=37 Score=29.93 Aligned_cols=254 Identities=10% Similarity=0.076 Sum_probs=122.0
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCC-Cc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLK-FD 188 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~-~~ 188 (400)
+..+++|+.. ++..-|---..|.+....--....|++.+++++ =++......++.-+-...+|.+++--. .+
T Consensus 55 ~~gwlVg~rg------tiletdd~g~tw~qal~~~gr~~f~sv~f~~~e-gw~vGe~sqll~T~DgGqsWARi~~~e~~e 127 (339)
T COG4447 55 SHGWLVGGRG------TILETDDGGITWAQALDFLGRHAFHSVSFLGME-GWIVGEPSQLLHTTDGGQSWARIPLSEKLE 127 (339)
T ss_pred cceEEEcCcc------eEEEecCCcccchhhhchhhhhheeeeeeeccc-ccccCCcceEEEecCCCcchhhchhhcCCC
Confidence 4566777754 344445555678864332222334555556654 444444445555555667898876422 11
Q ss_pred ceeeeEEEECC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCc--ccccEEEEeCCEEEEEcCccccCCCCcceE
Q psy2979 189 FDVSGIAMLDG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLA--VTSPAVVAHEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 189 r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v 265 (400)
-.-.++..+++ .-|++|- ...++.=+---+.|+.+.+-..+ ..+.-+.+.+|...++|-. . +-.
T Consensus 128 g~~~sI~f~d~q~g~m~gd------~Gail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~dng~vaVg~r---G----s~f 194 (339)
T COG4447 128 GFPDSITFLDDQRGEMLGD------QGAILKTTDGGKNWKALVEKAVGLAVPNEIARSADNGYVAVGAR---G----SFF 194 (339)
T ss_pred CCcceeEEecchhhhhhcc------cceEEEecCCcccHhHhcccccchhhhhhhhhhccCCeEEEecC---c----ceE
Confidence 22223333433 3344432 12344434445678776542222 2222233445555555543 1 011
Q ss_pred EEEeCCCCceeeccCCCCCceeeeEEEE-CC--eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC-CcCccCcceEE--
Q psy2979 266 QRYNPKVNQWQDLAPMLIPRSGAAICAL-DS--CIYVLGGWHASTENTNRVECYHIAENTWEYKSP-MKEKRYRPGIA-- 339 (400)
Q Consensus 266 ~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~--~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~-- 339 (400)
...++-...|..-.+ ...|..-++..- .+ -+++.||. ..-....+.-+.|+..+. ....|...+..
T Consensus 195 ~T~~aGqt~~~~~g~-~s~~~letmg~adag~~g~la~g~q-------g~~f~~~~~gD~wsd~~~~~~~g~~~~Gl~d~ 266 (339)
T COG4447 195 STWGAGQTVWLPHGR-NSSRRLETMGLADAGSKGLLARGGQ-------GDQFSWVCGGDEWSDQGEPVNLGRRSWGLLDF 266 (339)
T ss_pred ecCCCCccEEeccCC-CccchhcccccccCCccceEEEccc-------cceeecCCCcccccccccchhcccCCCccccc
Confidence 223333333332221 222222222222 23 46677764 234455667788988763 22343344432
Q ss_pred --EECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCC-ceeeEEEccccccccc
Q psy2979 340 --VIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARS-WLGCVPLQIHKSQFVD 398 (400)
Q Consensus 340 --~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~-~~~~~~~~~~~~~~~~ 398 (400)
.-.+.+||.|+- .++..=--...+|++...-+..-. -++++.+.+++-+++|
T Consensus 267 a~~a~~~v~v~G~g-------Gnvl~StdgG~t~skd~g~~er~s~l~~V~~ts~~~~~l~G 321 (339)
T COG4447 267 APRAPPEVWVSGIG-------GNVLASTDGGTTWSKDGGVEERVSNLYSVVFTSPKAGFLCG 321 (339)
T ss_pred cccCCCCeEEeccC-------ccEEEecCCCeeEeccCChhhhhhhhheEEeccCCceEEEc
Confidence 226889998863 133333334457887665554434 4556666665555543
No 175
>KOG0316|consensus
Probab=81.03 E-value=35 Score=29.28 Aligned_cols=135 Identities=12% Similarity=0.193 Sum_probs=80.4
Q ss_pred CeEEEEeCCCCceEEc-cCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 214 DSVERYDPTKNEWSYI-EPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~-~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
.++-.+||..+.--+- +.-.......+ .+.++.-+..||- | ..++.||..|.+--+ .+..--.-..++.
T Consensus 39 rtvrLWNp~rg~liktYsghG~EVlD~~-~s~Dnskf~s~Gg---D----k~v~vwDV~TGkv~R--r~rgH~aqVNtV~ 108 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSGHGHEVLDAA-LSSDNSKFASCGG---D----KAVQVWDVNTGKVDR--RFRGHLAQVNTVR 108 (307)
T ss_pred ceEEeecccccceeeeecCCCceeeecc-ccccccccccCCC---C----ceEEEEEcccCeeee--ecccccceeeEEE
Confidence 4567778776653221 11111111222 2334444555554 3 478999998876322 1111111223344
Q ss_pred ECC--eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 293 LDS--CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 293 ~~~--~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+|+ .+.+.|++ ..++..+|-..+..+.+..+...+..-..+.+.+...|.|-. ++ .+-.||+..++
T Consensus 109 fNeesSVv~Sgsf------D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~-DG-----tvRtydiR~G~ 176 (307)
T KOG0316|consen 109 FNEESSVVASGSF------DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSV-DG-----TVRTYDIRKGT 176 (307)
T ss_pred ecCcceEEEeccc------cceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeecc-CC-----cEEEEEeecce
Confidence 433 67777777 568899999999988888888788887888888888777765 32 45677776654
No 176
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=81.00 E-value=51 Score=31.18 Aligned_cols=147 Identities=12% Similarity=0.108 Sum_probs=81.9
Q ss_pred CEEEEEECCCC-----CeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc---eE-EccCCCCccc
Q psy2979 167 DIVYVAASMHK-----ILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE---WS-YIEPMKLAVT 237 (400)
Q Consensus 167 ~~~~~yd~~~~-----~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~---W~-~~~~l~~~~~ 237 (400)
+.++..|.... .|..+.+-.. -....+...++.+|+....+ .....+..+++.... |. .+.+-.....
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~-~~~~~v~~~~~~~yi~Tn~~--a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~ 328 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPRED-GVEYYVDHHGDRLYILTNDD--APNGRLVAVDLADPSPAEWWTVLIPEDEDVS 328 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSS-S-EEEEEEETTEEEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--SSSEE
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCC-ceEEEEEccCCEEEEeeCCC--CCCcEEEEecccccccccceeEEcCCCCcee
Confidence 67888888875 6777655222 22233444588999886632 334567778877665 66 4444333334
Q ss_pred ccEEEEeCCEEEEEcCccccCCCCcceEEEEeCC-CCceeeccCCCCCceeeeEE-EE-CCe-EEEEcCcCCCCCCCCeE
Q psy2979 238 SPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPK-VNQWQDLAPMLIPRSGAAIC-AL-DSC-IYVLGGWHASTENTNRV 313 (400)
Q Consensus 238 ~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~r~~~~~~-~~-~~~-iyv~GG~~~~~~~~~~v 313 (400)
--.+...++.+++.--. ++ ...+..||.. +..-..+ ++|..-...... .. .+. .|.+.+... ..++
T Consensus 329 l~~~~~~~~~Lvl~~~~---~~--~~~l~v~~~~~~~~~~~~-~~p~~g~v~~~~~~~~~~~~~~~~ss~~~----P~~~ 398 (414)
T PF02897_consen 329 LEDVSLFKDYLVLSYRE---NG--SSRLRVYDLDDGKESREI-PLPEAGSVSGVSGDFDSDELRFSYSSFTT----PPTV 398 (414)
T ss_dssp EEEEEEETTEEEEEEEE---TT--EEEEEEEETT-TEEEEEE-ESSSSSEEEEEES-TT-SEEEEEEEETTE----EEEE
T ss_pred EEEEEEECCEEEEEEEE---CC--ccEEEEEECCCCcEEeee-cCCcceEEeccCCCCCCCEEEEEEeCCCC----CCEE
Confidence 44556678888877443 43 5689999998 3333333 333321111111 11 233 344445432 4689
Q ss_pred EEEECCCCeEEEc
Q psy2979 314 ECYHIAENTWEYK 326 (400)
Q Consensus 314 ~~yd~~~~~W~~~ 326 (400)
+.||+.+++.+.+
T Consensus 399 y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 399 YRYDLATGELTLL 411 (414)
T ss_dssp EEEETTTTCEEEE
T ss_pred EEEECCCCCEEEE
Confidence 9999999987654
No 177
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=80.76 E-value=49 Score=30.87 Aligned_cols=186 Identities=11% Similarity=0.118 Sum_probs=93.9
Q ss_pred EEEE-eecCEEEEEECCCCCe-EEccCCCCcceeeeEEEE---CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC
Q psy2979 160 IYCL-DIVDIVYVAASMHKIL-HSLGSLKFDFDVSGIAML---DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL 234 (400)
Q Consensus 160 iyv~-~~~~~~~~yd~~~~~w-~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~ 234 (400)
+|++ ...+++...|..+++- ..++... ..|..... +..+|+.+. + ..+..+|+.+.+ .+...+.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~--~v~~i~~ 76 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGK--VVATIKV 76 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSS--EEEEEE-
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcC-C-----CeEEEEECCccc--EEEEEec
Confidence 3344 4567888899887653 2333221 22333332 457999853 2 368999999887 4444555
Q ss_pred cccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCcee-ecc--CC----CCCceeeeEEEECCeEEEEcCcCCC
Q psy2979 235 AVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ-DLA--PM----LIPRSGAAICALDSCIYVLGGWHAS 306 (400)
Q Consensus 235 ~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~-~~~--~~----~~~r~~~~~~~~~~~iyv~GG~~~~ 306 (400)
.....+.+. -+|+..+++.. . .+.+..+|..+.+=- .++ .+ +.+|-..-.+...+..|++.-.+
T Consensus 77 G~~~~~i~~s~DG~~~~v~n~---~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-- 148 (369)
T PF02239_consen 77 GGNPRGIAVSPDGKYVYVANY---E---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-- 148 (369)
T ss_dssp SSEEEEEEE--TTTEEEEEEE---E---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT--
T ss_pred CCCcceEEEcCCCCEEEEEec---C---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc--
Confidence 554444443 35554444433 1 357889998776532 222 12 23444333344456656665432
Q ss_pred CCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEE
Q psy2979 307 TENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 307 ~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 372 (400)
...++..|....+=.........+..|.+..- +++-|+++-. ..+.+-+.|.++++-.
T Consensus 149 ---~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~-----~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 149 ---TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN-----GSNKIAVIDTKTGKLV 207 (369)
T ss_dssp ---TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG-----GGTEEEEEETTTTEEE
T ss_pred ---CCeEEEEEeccccccceeeecccccccccccCcccceeeeccc-----ccceeEEEeeccceEE
Confidence 46788888665432222233445555555444 4444444322 2357888888877533
No 178
>KOG0291|consensus
Probab=76.92 E-value=89 Score=31.66 Aligned_cols=151 Identities=14% Similarity=0.162 Sum_probs=85.6
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeec
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL 278 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~ 278 (400)
|.=..+|+.. +..+.+|+.++++..--..-...+-......-+|++.+.|+. |+ .|-.||..+..-. +
T Consensus 319 GDWiA~g~~k----lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e---Dg----KVKvWn~~SgfC~-v 386 (893)
T KOG0291|consen 319 GDWIAFGCSK----LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE---DG----KVKVWNTQSGFCF-V 386 (893)
T ss_pred CCEEEEcCCc----cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC---CC----cEEEEeccCceEE-E
Confidence 5555666532 456788887777664332222233332333458899999998 65 5778877554211 1
Q ss_pred cCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEEC--CEEEEEcCccCC
Q psy2979 279 APMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVID--GKIYVLGGEEGW 354 (400)
Q Consensus 279 ~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~--~~lyv~GG~~~~ 354 (400)
.+....++++++.. .++..+..-. ..+|-.+|...-.-..--..|.+ ..+++++.| |.|.+.|+. +
T Consensus 387 -TFteHts~Vt~v~f~~~g~~llssSL------DGtVRAwDlkRYrNfRTft~P~p-~QfscvavD~sGelV~AG~~-d- 456 (893)
T KOG0291|consen 387 -TFTEHTSGVTAVQFTARGNVLLSSSL------DGTVRAWDLKRYRNFRTFTSPEP-IQFSCVAVDPSGELVCAGAQ-D- 456 (893)
T ss_pred -EeccCCCceEEEEEEecCCEEEEeec------CCeEEeeeecccceeeeecCCCc-eeeeEEEEcCCCCEEEeecc-c-
Confidence 22223333333332 4444444433 34677888766543332223333 344556666 899999987 3
Q ss_pred CCCCCeEEEEECCCCcEEEe
Q psy2979 355 DGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 355 ~~~~~~v~~yd~~~~~W~~~ 374 (400)
.-+|++++.+|++-..+
T Consensus 457 ---~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 457 ---SFEIFVWSVQTGQLLDI 473 (893)
T ss_pred ---eEEEEEEEeecCeeeeh
Confidence 45788889888876554
No 179
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=76.01 E-value=74 Score=30.31 Aligned_cols=187 Identities=16% Similarity=0.137 Sum_probs=98.0
Q ss_pred EEECCeEEEEE---eecCEEEEEECCCCCeEEccCCC--CcceeeeEEEECCEEEEE--cccCCCCCCCeEEEEeCCCCc
Q psy2979 153 VVSGRNTIYCL---DIVDIVYVAASMHKILHSLGSLK--FDFDVSGIAMLDGFVYAV--GGWDGSCRLDSVERYDPTKNE 225 (400)
Q Consensus 153 ~~~~~~~iyv~---~~~~~~~~yd~~~~~w~~~~~~~--~~r~~~~~~~~~~~iyv~--GG~~~~~~~~~v~~yd~~~~~ 225 (400)
+.+++. +|.+ .....++.-|...+..++..+.. -||. +..+++=.|+ || +++.|||.+++
T Consensus 232 mIV~~R-vYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~----~nsDGkrIvFq~~G--------dIylydP~td~ 298 (668)
T COG4946 232 MIVGER-VYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRN----ANSDGKRIVFQNAG--------DIYLYDPETDS 298 (668)
T ss_pred eEEcce-EEEEecccCccceEEeccCCchhhhcCCchhccccc----cCCCCcEEEEecCC--------cEEEeCCCcCc
Confidence 456777 8888 45556777777766655555433 2332 2234443333 43 68999999998
Q ss_pred eEEcc-CCCCcccc-----------c-EEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 226 WSYIE-PMKLAVTS-----------P-AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 226 W~~~~-~l~~~~~~-----------~-~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
-+++. .||..|.. . -.+..+|..+++=.+ .....+++..+---+++.-..-|+ .-..
T Consensus 299 lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR--------GkaFi~~~~~~~~iqv~~~~~VrY--~r~~ 368 (668)
T COG4946 299 LEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR--------GKAFIMRPWDGYSIQVGKKGGVRY--RRIQ 368 (668)
T ss_pred ceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec--------CcEEEECCCCCeeEEcCCCCceEE--EEEc
Confidence 77763 33432211 0 123445555554333 146666664444444432222222 2233
Q ss_pred ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEE
Q psy2979 293 LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 293 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 372 (400)
.+++-.++|-.+ -..+..||..+..-..+.. +.++...-.+.-+|+-.+++-. .-++|++|+++++=+
T Consensus 369 ~~~e~~vigt~d-----gD~l~iyd~~~~e~kr~e~-~lg~I~av~vs~dGK~~vvaNd------r~el~vididngnv~ 436 (668)
T COG4946 369 VDPEGDVIGTND-----GDKLGIYDKDGGEVKRIEK-DLGNIEAVKVSPDGKKVVVAND------RFELWVIDIDNGNVR 436 (668)
T ss_pred cCCcceEEeccC-----CceEEEEecCCceEEEeeC-CccceEEEEEcCCCcEEEEEcC------ceEEEEEEecCCCee
Confidence 344466666543 3478888888877554432 1122111222225564454432 357788888777655
Q ss_pred Ee
Q psy2979 373 IM 374 (400)
Q Consensus 373 ~~ 374 (400)
.+
T Consensus 437 ~i 438 (668)
T COG4946 437 LI 438 (668)
T ss_pred Ee
Confidence 54
No 180
>KOG0281|consensus
Probab=75.99 E-value=62 Score=29.41 Aligned_cols=109 Identities=11% Similarity=0.192 Sum_probs=64.4
Q ss_pred ceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEE
Q psy2979 189 FDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY 268 (400)
Q Consensus 189 r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 268 (400)
|+.--++-++++ |++.... ..++-.++..|... +..+...+.+-++..++|++.|.|.. | +++-.|
T Consensus 320 rAaVNvVdfd~k-yIVsASg----DRTikvW~~st~ef--vRtl~gHkRGIAClQYr~rlvVSGSS---D----ntIRlw 385 (499)
T KOG0281|consen 320 RAAVNVVDFDDK-YIVSASG----DRTIKVWSTSTCEF--VRTLNGHKRGIACLQYRDRLVVSGSS---D----NTIRLW 385 (499)
T ss_pred hhheeeeccccc-eEEEecC----CceEEEEeccceee--ehhhhcccccceehhccCeEEEecCC---C----ceEEEE
Confidence 333334445666 4432211 24567777766644 34456666777888899999998877 3 578888
Q ss_pred eCCCCceeeccCCCCCc-eeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCC
Q psy2979 269 NPKVNQWQDLAPMLIPR-SGAAICALDSCIYVLGGWHASTENTNRVECYHIAE 320 (400)
Q Consensus 269 d~~~~~W~~~~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~ 320 (400)
|.....--.+- ... ....++..+++=.+.||+++ ++-.+|..+
T Consensus 386 di~~G~cLRvL---eGHEeLvRciRFd~krIVSGaYDG------kikvWdl~a 429 (499)
T KOG0281|consen 386 DIECGACLRVL---EGHEELVRCIRFDNKRIVSGAYDG------KIKVWDLQA 429 (499)
T ss_pred eccccHHHHHH---hchHHhhhheeecCceeeeccccc------eEEEEeccc
Confidence 87665432221 111 12235567888889999843 455555443
No 181
>KOG0315|consensus
Probab=75.80 E-value=52 Score=28.48 Aligned_cols=135 Identities=13% Similarity=0.137 Sum_probs=68.9
Q ss_pred CeEEEEeCCCCceEEccCCCCccccc-EEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCc-eeeccCCC--CCceee
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSP-AVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQ-WQDLAPML--IPRSGA 288 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~--~~r~~~ 288 (400)
..+.++|+.++..+.. .+|.....- ++++. +|+..+.+-. ....++++..+.+ -+++.|.- ..+.+|
T Consensus 146 g~irvWDl~~~~c~~~-liPe~~~~i~sl~v~~dgsml~a~nn-------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~ 217 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHE-LIPEDDTSIQSLTVMPDGSMLAAANN-------KGNCYVWRLLNHQTASELEPVHKFQAHNGH 217 (311)
T ss_pred CcEEEEEccCCccccc-cCCCCCcceeeEEEcCCCcEEEEecC-------CccEEEEEccCCCccccceEhhheecccce
Confidence 4589999999976543 344333222 33333 5554444333 2356777765533 22222222 233444
Q ss_pred eEEEE---CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc-CCc-CccCcceE-EEECCEEEEEcCccCCCCCCCeEE
Q psy2979 289 AICAL---DSCIYVLGGWHASTENTNRVECYHIAENTWEYKS-PMK-EKRYRPGI-AVIDGKIYVLGGEEGWDGYHDSIE 362 (400)
Q Consensus 289 ~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~-~~~~~~~~-~~~~~~lyv~GG~~~~~~~~~~v~ 362 (400)
..-.. +++.++..+. ..++.+++.++. .++. .+. ..|..-.+ ...+++-.+.|+. + ..+.
T Consensus 218 il~C~lSPd~k~lat~ss------dktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTass-d-----~~~r 283 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSS------DKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASS-D-----HTAR 283 (311)
T ss_pred EEEEEECCCCcEEEeecC------CceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCC-C-----Ccee
Confidence 44322 6676666665 567888887766 1111 111 12333333 3446665555554 2 3456
Q ss_pred EEECCCCc
Q psy2979 363 CYDVDNDS 370 (400)
Q Consensus 363 ~yd~~~~~ 370 (400)
.+|++.++
T Consensus 284 lW~~~~~k 291 (311)
T KOG0315|consen 284 LWDLSAGK 291 (311)
T ss_pred ecccccCc
Confidence 77777764
No 182
>PRK01742 tolB translocation protein TolB; Provisional
Probab=75.21 E-value=78 Score=30.19 Aligned_cols=181 Identities=12% Similarity=0.009 Sum_probs=85.7
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEEECC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeC
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAMLDG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE 245 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~ 245 (400)
..++.+|..+++-..+...+.... .....-++ .|++....++. ..++.+|+.+++...+..-...... ..-.-+
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt~~~~~~~~-~~wSpD 302 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQLTSGAGNNTE-PSWSPD 302 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEeeccCCCCcCC-EEECCC
Confidence 468888888776555544332111 11112244 44443322222 3588889888877666542221111 122234
Q ss_pred C-EEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCe-EEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 246 G-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSC-IYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 246 ~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+ .|+..... ++ ...++.+|..+..-+.+.. ... .....-+++ |++.++ ..+..+|..++++
T Consensus 303 G~~i~f~s~~---~g--~~~I~~~~~~~~~~~~l~~---~~~-~~~~SpDG~~ia~~~~--------~~i~~~Dl~~g~~ 365 (429)
T PRK01742 303 GQSILFTSDR---SG--SPQVYRMSASGGGASLVGG---RGY-SAQISADGKTLVMING--------DNVVKQDLTSGST 365 (429)
T ss_pred CCEEEEEECC---CC--CceEEEEECCCCCeEEecC---CCC-CccCCCCCCEEEEEcC--------CCEEEEECCCCCe
Confidence 4 45554433 22 2467777776554333321 111 112222444 444442 3467789999888
Q ss_pred EEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 324 EYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
..+.... ... .....-+++..+++.. .+. ...++..+.....=+.+
T Consensus 366 ~~lt~~~-~~~-~~~~sPdG~~i~~~s~-~g~--~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 366 EVLSSTF-LDE-SPSISPNGIMIIYSST-QGL--GKVLQLVSADGRFKARL 411 (429)
T ss_pred EEecCCC-CCC-CceECCCCCEEEEEEc-CCC--ceEEEEEECCCCceEEc
Confidence 7664321 111 1122336776666654 221 22344455544433333
No 183
>KOG3881|consensus
Probab=74.11 E-value=74 Score=29.39 Aligned_cols=146 Identities=15% Similarity=0.207 Sum_probs=70.9
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccC------CCCcccccEEEEeCC---EEEEEcCccccCCCCcceEEE
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEP------MKLAVTSPAVVAHEG---MLYVTGGAILEDGDGIEQVQR 267 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~------l~~~~~~~~~~~~~~---~iyv~GG~~~~~~~~~~~v~~ 267 (400)
..|++.||... .+.+..||+.+. .|+.-.. |..|.....+.-+.+ .-++.+-. ...+-.
T Consensus 161 p~Iva~GGke~---~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~-------~hqvR~ 230 (412)
T KOG3881|consen 161 PYIVATGGKEN---INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR-------YHQVRL 230 (412)
T ss_pred CceEecCchhc---ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec-------ceeEEE
Confidence 46788888653 456777777655 4654321 223333333333322 33333322 457889
Q ss_pred EeCCCCceeeccCC---CCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEEC-C
Q psy2979 268 YNPKVNQWQDLAPM---LIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVID-G 343 (400)
Q Consensus 268 yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~ 343 (400)
||+... -+.+..+ ..+...-+...-++.||+ |-. ...+..||..+++--...---..-..-+..... .
T Consensus 231 YDt~~q-RRPV~~fd~~E~~is~~~l~p~gn~Iy~-gn~------~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~ 302 (412)
T KOG3881|consen 231 YDTRHQ-RRPVAQFDFLENPISSTGLTPSGNFIYT-GNT------KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH 302 (412)
T ss_pred ecCccc-CcceeEeccccCcceeeeecCCCcEEEE-ecc------cchhheecccCceeeccccCCccCCcceEEEcCCC
Confidence 999744 3444333 233333333333445444 433 457888998877633221000000111122222 3
Q ss_pred EEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 344 KIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 344 ~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
++...+|. + ..+-+||.++
T Consensus 303 ~~las~GL-D-----RyvRIhD~kt 321 (412)
T KOG3881|consen 303 PVLASCGL-D-----RYVRIHDIKT 321 (412)
T ss_pred ceEEeecc-c-----eeEEEeeccc
Confidence 56666776 2 3455666666
No 184
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=72.63 E-value=66 Score=28.22 Aligned_cols=188 Identities=12% Similarity=0.117 Sum_probs=91.5
Q ss_pred CCEEEEEc--ccCCCC-CCCe-EEEEeCC-CCceEEccCCCCc------ccccE--EEEeCCEEEEEcCccccCCCCcce
Q psy2979 198 DGFVYAVG--GWDGSC-RLDS-VERYDPT-KNEWSYIEPMKLA------VTSPA--VVAHEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 198 ~~~iyv~G--G~~~~~-~~~~-v~~yd~~-~~~W~~~~~l~~~------~~~~~--~~~~~~~iyv~GG~~~~~~~~~~~ 264 (400)
+++|+++. +..... .... ....... -.+|+....++.. ..... ...-+|.+++.. .. ........
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~-~~-~~~~~~~~ 135 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPY-YH-ESGGSFSA 135 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEE-EE-ESSCEEEE
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEE-ee-ccccCcce
Confidence 78888885 222111 1111 1244444 4589887654422 11112 344488888772 10 01111233
Q ss_pred EEEEe-CCCCceeeccCCC-CCceeeeEEE-E-CCeEEEEcCcCCCCCCCCeEEEEECC-CCeEEEcc--CCcCccCcce
Q psy2979 265 VQRYN-PKVNQWQDLAPML-IPRSGAAICA-L-DSCIYVLGGWHASTENTNRVECYHIA-ENTWEYKS--PMKEKRYRPG 337 (400)
Q Consensus 265 v~~yd-~~~~~W~~~~~~~-~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~--~~~~~~~~~~ 337 (400)
...|. -...+|+.....+ .........+ . +|.|+++--.. .. ......+... -.+|+... .+|.+.....
T Consensus 136 ~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~--~~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~ 212 (275)
T PF13088_consen 136 FVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GN--DDIYISRSTDGGRTWSPPQPTNLPNPNSSIS 212 (275)
T ss_dssp EEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SS--TEEEEEEESSTTSS-EEEEEEECSSCCEEEE
T ss_pred EEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CC--CcEEEEEECCCCCcCCCceecccCcccCCce
Confidence 44444 4456699887664 3233333333 3 67888876432 11 2344455554 34699855 3444444444
Q ss_pred EEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCC---Cc-eeeEEEcc
Q psy2979 338 IAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSAR---SW-LGCVPLQI 391 (400)
Q Consensus 338 ~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r---~~-~~~~~~~~ 391 (400)
+..+ +++++++... ......-.+..-.-...+|+....+.... ++ ..++.+++
T Consensus 213 ~~~~~~g~~~~~~~~-~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~d 270 (275)
T PF13088_consen 213 LVRLSDGRLLLVYNN-PDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPD 270 (275)
T ss_dssp EEECTTSEEEEEEEC-SSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEET
T ss_pred EEEcCCCCEEEEEEC-CCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCC
Confidence 4443 6788888763 22221222333233367899776654433 43 44555554
No 185
>KOG0286|consensus
Probab=71.75 E-value=73 Score=28.31 Aligned_cols=107 Identities=11% Similarity=0.123 Sum_probs=54.5
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC----CCCcccccEEEE-e-CCEEEEEcCccccCCCCcceEEEEeCC
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP----MKLAVTSPAVVA-H-EGMLYVTGGAILEDGDGIEQVQRYNPK 271 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~----l~~~~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~v~~yd~~ 271 (400)
.+.....||.+ +.+.+|+..+..=....+ ++....+.+++. . +++|.--.|. .+.-.+|.+
T Consensus 108 Sg~~VAcGGLd-----N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD--------~TCalWDie 174 (343)
T KOG0286|consen 108 SGNFVACGGLD-----NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD--------MTCALWDIE 174 (343)
T ss_pred CCCeEEecCcC-----ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC--------ceEEEEEcc
Confidence 67778889977 446778877553222222 333333334444 3 4455443343 266778887
Q ss_pred CCceeeccC-CCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 272 VNQWQDLAP-MLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 272 ~~~W~~~~~-~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+.+=...=. -..-...-...-.+...|+.||.+ .....+|.....-
T Consensus 175 ~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD------~~aklWD~R~~~c 221 (343)
T KOG0286|consen 175 TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCD------KSAKLWDVRSGQC 221 (343)
T ss_pred cceEEEEecCCcccEEEEecCCCCCCeEEecccc------cceeeeeccCcce
Confidence 765433210 000000001111167899999974 4455666665543
No 186
>KOG0266|consensus
Probab=70.24 E-value=1.1e+02 Score=29.60 Aligned_cols=180 Identities=13% Similarity=0.088 Sum_probs=89.6
Q ss_pred eecCEEEEEECCCC-C-eEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccE
Q psy2979 164 DIVDIVYVAASMHK-I-LHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPA 240 (400)
Q Consensus 164 ~~~~~~~~yd~~~~-~-w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~ 240 (400)
..-..+..+|...+ + -..+...+... ++++. ..+.+++.|+.+ .++..+|..+++-...-+.........
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D-----~tvriWd~~~~~~~~~l~~hs~~is~~ 294 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD-----GTVRIWDVRTGECVRKLKGHSDGISGL 294 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC-----CcEEEEeccCCeEEEeeeccCCceEEE
Confidence 33456777777333 2 23333333333 22222 245788888876 458889998854433211111111122
Q ss_pred EEEeCCEEEEEcCccccCCCCcceEEEEeCCCCcee---eccCCCCCc-eeeeEEEECCeEEEEcCcCCCCCCCCeEEEE
Q psy2979 241 VVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ---DLAPMLIPR-SGAAICALDSCIYVLGGWHASTENTNRVECY 316 (400)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~---~~~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y 316 (400)
+..-++.+++.+.. ++ .+..||..+..-. .+.....+. .......-+++.++.+.. .+.+-.+
T Consensus 295 ~f~~d~~~l~s~s~---d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~------d~~~~~w 361 (456)
T KOG0266|consen 295 AFSPDGNLLVSASY---DG----TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL------DRTLKLW 361 (456)
T ss_pred EECCCCCEEEEcCC---Cc----cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC------CCeEEEE
Confidence 23347788888876 54 6899998777632 333333332 122222224444444443 2356666
Q ss_pred ECCCCeEEE-ccCCcCc-cCcceEE-EECCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 317 HIAENTWEY-KSPMKEK-RYRPGIA-VIDGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 317 d~~~~~W~~-~~~~~~~-~~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
|..+..--. ....... +..+..+ ..+++..+.|+. ...|+.+|+.+.
T Consensus 362 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~------d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 362 DLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE------DGSVYVWDSSSG 411 (456)
T ss_pred EccCCcceeeecccCCcceeEecccccCCCCeEEEEeC------CceEEEEeCCcc
Confidence 666443211 1111111 2222222 226666666665 257888998873
No 187
>KOG0281|consensus
Probab=69.81 E-value=68 Score=29.16 Aligned_cols=126 Identities=13% Similarity=0.237 Sum_probs=67.1
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE----eCCEEEEEcCccccCCCCcceEEEEeCCCC
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA----HEGMLYVTGGAILEDGDGIEQVQRYNPKVN 273 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~----~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 273 (400)
++++.+.|..+ .++-++|..+++ ++. ...+|+-++ +++.+.|.... |. ++-.+|...-
T Consensus 246 d~rviisGSSD-----sTvrvWDv~tge-----~l~-tlihHceaVLhlrf~ng~mvtcSk---Dr----siaVWdm~sp 307 (499)
T KOG0281|consen 246 DERVIVSGSSD-----STVRVWDVNTGE-----PLN-TLIHHCEAVLHLRFSNGYMVTCSK---DR----SIAVWDMASP 307 (499)
T ss_pred cceEEEecCCC-----ceEEEEeccCCc-----hhh-HHhhhcceeEEEEEeCCEEEEecC---Cc----eeEEEeccCc
Confidence 67777666543 568888877764 222 233343332 34444444443 32 3444443322
Q ss_pred ceeeccC---CCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcC
Q psy2979 274 QWQDLAP---MLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGG 350 (400)
Q Consensus 274 ~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG 350 (400)
+ .++- +-.-|+...++-++++ |++.... ..++-.++..+... +..+...+.+-++..++|++.|.|.
T Consensus 308 s--~it~rrVLvGHrAaVNvVdfd~k-yIVsASg-----DRTikvW~~st~ef--vRtl~gHkRGIAClQYr~rlvVSGS 377 (499)
T KOG0281|consen 308 T--DITLRRVLVGHRAAVNVVDFDDK-YIVSASG-----DRTIKVWSTSTCEF--VRTLNGHKRGIACLQYRDRLVVSGS 377 (499)
T ss_pred h--HHHHHHHHhhhhhheeeeccccc-eEEEecC-----CceEEEEeccceee--ehhhhcccccceehhccCeEEEecC
Confidence 2 1111 1123334444555777 4443321 35677777666554 3445556667778888999988886
Q ss_pred c
Q psy2979 351 E 351 (400)
Q Consensus 351 ~ 351 (400)
.
T Consensus 378 S 378 (499)
T KOG0281|consen 378 S 378 (499)
T ss_pred C
Confidence 5
No 188
>KOG0279|consensus
Probab=69.71 E-value=79 Score=27.88 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=73.9
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCcee
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 276 (400)
++...+.|+++ ..+..+|..+++=+..=- ...+.-.+++ .-++.-.|.|.. | +++-.||...+.=-
T Consensus 74 dg~~alS~swD-----~~lrlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~qivSGSr---D----kTiklwnt~g~ck~ 140 (315)
T KOG0279|consen 74 DGNFALSASWD-----GTLRLWDLATGESTRRFV-GHTKDVLSVAFSTDNRQIVSGSR---D----KTIKLWNTLGVCKY 140 (315)
T ss_pred CCceEEecccc-----ceEEEEEecCCcEEEEEE-ecCCceEEEEecCCCceeecCCC---c----ceeeeeeecccEEE
Confidence 66666777766 347778888764322100 0111111122 235566666666 3 46777777666533
Q ss_pred eccCCCCCceeeeEEEE--C--CeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCc-ce--EEEECCEEEEEc
Q psy2979 277 DLAPMLIPRSGAAICAL--D--SCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYR-PG--IAVIDGKIYVLG 349 (400)
Q Consensus 277 ~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~-~~--~~~~~~~lyv~G 349 (400)
.+..-.. |..-..+.. + +-+++.+|. .+.|-.+|..+-+- ..+..++.. .. .+..||.+...|
T Consensus 141 t~~~~~~-~~WVscvrfsP~~~~p~Ivs~s~------DktvKvWnl~~~~l---~~~~~gh~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 141 TIHEDSH-REWVSCVRFSPNESNPIIVSASW------DKTVKVWNLRNCQL---RTTFIGHSGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred EEecCCC-cCcEEEEEEcCCCCCcEEEEccC------CceEEEEccCCcch---hhccccccccEEEEEECCCCCEEecC
Confidence 3322111 333333333 2 566677776 45777888766442 222222222 22 223399999999
Q ss_pred CccCCCCCCCeEEEEECCCC
Q psy2979 350 GEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~~~~ 369 (400)
|. ++ .+..+|....
T Consensus 211 gk-dg-----~~~LwdL~~~ 224 (315)
T KOG0279|consen 211 GK-DG-----EAMLWDLNEG 224 (315)
T ss_pred CC-Cc-----eEEEEEccCC
Confidence 98 33 4555565544
No 189
>KOG3545|consensus
Probab=69.38 E-value=75 Score=27.51 Aligned_cols=180 Identities=14% Similarity=0.156 Sum_probs=99.1
Q ss_pred cEEEEEeccCCCcccceEEEEEc----CCCceEEccCCcccceeeeEEEECCeEEEEE-eecCEEEEEECCCCC---eEE
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCV----KTKVWKTLSCLPFAISKHGLVVSGRNTIYCL-DIVDIVYVAASMHKI---LHS 181 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~----~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~-~~~~~~~~yd~~~~~---w~~ 181 (400)
+.+++..... ...+..|.. ..+.+...-.+|.+..+.+.++.++. +|.- ...+.+-.|+..+.. |..
T Consensus 31 ~r~~~~~~~~----~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs-~yynk~~t~~ivky~l~~~~~~~~~~ 105 (249)
T KOG3545|consen 31 DRIYVMNYFD----GLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGS-LYYNKAGTRNIIKYDLETRTVAGSAA 105 (249)
T ss_pred CceEEecccc----CceEEEeccHHHhhccCcceEEeCCCCccccceEEEcce-EEeeccCCcceEEEEeecceeeeeee
Confidence 6677763332 233334432 33445555567877788888888888 7776 455668888888743 444
Q ss_pred ccCCCC---------cceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCC----CCceEEccCCCCcccccEEEEeCCEE
Q psy2979 182 LGSLKF---------DFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPT----KNEWSYIEPMKLAVTSPAVVAHEGML 248 (400)
Q Consensus 182 ~~~~~~---------~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~----~~~W~~~~~l~~~~~~~~~~~~~~~i 248 (400)
++.+-. +....-+++.++-++++=-..++....-+.+.||. .++|.. .++....+- +..+=|.+
T Consensus 106 lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T--~~~k~~~~~-aF~iCGvL 182 (249)
T KOG3545|consen 106 LPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNT--TLPKRSAGN-AFMICGVL 182 (249)
T ss_pred ccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHHhheeeeecc--ccCCCCcCc-eEEEeeee
Confidence 443211 12233355566677777554444333334677774 345633 233333332 33333577
Q ss_pred EEEcCccccCCCCcceE-EEEeCCCCceeecc-CCCCCceeeeEEEE---CCeEEEEc
Q psy2979 249 YVTGGAILEDGDGIEQV-QRYNPKVNQWQDLA-PMLIPRSGAAICAL---DSCIYVLG 301 (400)
Q Consensus 249 yv~GG~~~~~~~~~~~v-~~yd~~~~~W~~~~-~~~~~r~~~~~~~~---~~~iyv~G 301 (400)
|++-.. ... ...+ +.||..+++=..+. |++.+-...++.-. +.++|+..
T Consensus 183 Y~v~S~---~~~-~~~i~yaydt~~~~~~~~~ipf~N~y~~~~~idYNP~D~~LY~wd 236 (249)
T KOG3545|consen 183 YVVHSY---NCT-HTQISYAYDTTTGTQERIDLPFPNPYSYATMIDYNPRDRRLYAWD 236 (249)
T ss_pred EEEecc---ccC-CceEEEEEEcCCCceecccccccchhhhhhccCCCcccceeeEec
Confidence 887554 222 2234 78999888775443 34444444444443 55788775
No 190
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=69.27 E-value=51 Score=25.56 Aligned_cols=66 Identities=15% Similarity=0.350 Sum_probs=42.0
Q ss_pred CeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCc-
Q psy2979 295 SCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDS- 370 (400)
Q Consensus 295 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~- 370 (400)
..+.++|- .+.+..||...|.=..-..+|.+........+ ...+.++||. .+|.-||-+.+.
T Consensus 64 ~D~LliGt-------~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGn-------csi~Gfd~~G~e~ 129 (136)
T PF14781_consen 64 RDCLLIGT-------QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGN-------CSIQGFDYEGNEI 129 (136)
T ss_pred cCEEEEec-------cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECce-------EEEEEeCCCCcEE
Confidence 46777774 57899999998874433344433322222222 4568899997 478888877664
Q ss_pred -EEEe
Q psy2979 371 -WEIM 374 (400)
Q Consensus 371 -W~~~ 374 (400)
|...
T Consensus 130 fWtVt 134 (136)
T PF14781_consen 130 FWTVT 134 (136)
T ss_pred EEEec
Confidence 6653
No 191
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=68.19 E-value=54 Score=25.42 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=40.2
Q ss_pred CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE---CCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 246 GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL---DSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
..+.++|-. +.+..||...|.=-.-..++..........+ ...+.++||. -++.-||.+.+.
T Consensus 64 ~D~LliGt~--------t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGn-------csi~Gfd~~G~e 128 (136)
T PF14781_consen 64 RDCLLIGTQ--------TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGN-------CSIQGFDYEGNE 128 (136)
T ss_pred cCEEEEecc--------ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECce-------EEEEEeCCCCcE
Confidence 456667655 5899999988872222334433333223233 5688999984 577888876554
Q ss_pred --EEEc
Q psy2979 323 --WEYK 326 (400)
Q Consensus 323 --W~~~ 326 (400)
|+..
T Consensus 129 ~fWtVt 134 (136)
T PF14781_consen 129 IFWTVT 134 (136)
T ss_pred EEEEec
Confidence 6643
No 192
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=67.42 E-value=21 Score=20.70 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=16.5
Q ss_pred eEEEECCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 337 GIAVIDGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 337 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
+.++.++++|+.+.. ..++++|+++
T Consensus 16 ~~~v~~g~vyv~~~d-------g~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGD-------GNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TT-------SEEEEEETT-
T ss_pred CCEEECCEEEEEcCC-------CEEEEEeCCC
Confidence 345568999887764 5789999874
No 193
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=66.70 E-value=88 Score=27.31 Aligned_cols=158 Identities=10% Similarity=0.124 Sum_probs=76.9
Q ss_pred eeeeEEEECCEEEEEcccC--CCCCCCeEEEEe---CCCCceEE--ccCCCC-------cccccEEEEeCCEEEEEcCcc
Q psy2979 190 DVSGIAMLDGFVYAVGGWD--GSCRLDSVERYD---PTKNEWSY--IEPMKL-------AVTSPAVVAHEGMLYVTGGAI 255 (400)
Q Consensus 190 ~~~~~~~~~~~iyv~GG~~--~~~~~~~v~~yd---~~~~~W~~--~~~l~~-------~~~~~~~~~~~~~iyv~GG~~ 255 (400)
+.+++.+++++||.+=-.. ....+...+.|| ...+.|+. ++..|. .-.-|+.+.+++.=|.+|=.
T Consensus 76 HCmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyH- 154 (367)
T PF12217_consen 76 HCMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYH- 154 (367)
T ss_dssp E-B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEE-
T ss_pred eeeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEec-
Confidence 4456788899999874321 122233344454 34677865 344443 33457778888888888744
Q ss_pred ccCCCC-cceE--EEE----eCCCCc-eeecc-CCCCCceeeeEEEECCeEEEEcCcCCC-CCCCCeEEEEECCCCeEEE
Q psy2979 256 LEDGDG-IEQV--QRY----NPKVNQ-WQDLA-PMLIPRSGAAICALDSCIYVLGGWHAS-TENTNRVECYHIAENTWEY 325 (400)
Q Consensus 256 ~~~~~~-~~~v--~~y----d~~~~~-W~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~v~~yd~~~~~W~~ 325 (400)
+|+. ..++ ..+ +..... =..++ ......+..++-.++|.+|+.--.... .. -..+.+-+.....|+.
T Consensus 155 --nGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~-GS~L~rs~d~G~~w~s 231 (367)
T PF12217_consen 155 --NGDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNP-GSSLHRSDDNGQNWSS 231 (367)
T ss_dssp --E-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS----EEEEESSTTSS-EE
T ss_pred --cCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCC-cceeeeecccCCchhh
Confidence 3332 2222 222 111111 12222 223334556677789999998643332 32 4567777777788998
Q ss_pred ccC-CcCccCcceEEEECCEEEEEcCc
Q psy2979 326 KSP-MKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 326 ~~~-~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
+.- -.......-.+..++.||+||-.
T Consensus 232 lrfp~nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 232 LRFPNNVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp EE-TT---SS---EEEETTEEEEEEE-
T ss_pred ccccccccccCCCceeeCCEEEEEecc
Confidence 752 23444555577789999999854
No 194
>KOG1332|consensus
Probab=66.41 E-value=87 Score=27.13 Aligned_cols=56 Identities=14% Similarity=0.190 Sum_probs=30.7
Q ss_pred EEEeCCCCceeec--cCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCC-CeEEEccC
Q psy2979 266 QRYNPKVNQWQDL--APMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAE-NTWEYKSP 328 (400)
Q Consensus 266 ~~yd~~~~~W~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~~ 328 (400)
|.-+.+.++|+.- .++|.+... ..-.+-|.++.++|- .+.|..+-+.. ++|+.++.
T Consensus 238 wt~~~e~e~wk~tll~~f~~~~w~-vSWS~sGn~LaVs~G------dNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTLLEEFPDVVWR-VSWSLSGNILAVSGG------DNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred EEecCccCcccccccccCCcceEE-EEEeccccEEEEecC------CcEEEEEEeCCCCcEEEccc
Confidence 3334456678654 355555433 333444444444443 56777776654 49998764
No 195
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=64.95 E-value=79 Score=26.10 Aligned_cols=70 Identities=13% Similarity=0.241 Sum_probs=43.4
Q ss_pred CCeEEEEECCCCeEEEccCCcC-ccCcceEE-EE-CCE-EEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC
Q psy2979 310 TNRVECYHIAENTWEYKSPMKE-KRYRPGIA-VI-DGK-IYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS 379 (400)
Q Consensus 310 ~~~v~~yd~~~~~W~~~~~~~~-~~~~~~~~-~~-~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 379 (400)
...++.+|..++.|..+.--+. ....+--+ =+ +.. ++++|..++.-..-..+++|++.+++-..+-....
T Consensus 87 iGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~d 160 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKD 160 (200)
T ss_pred ceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccc
Confidence 7899999999998876643232 23333322 23 344 55555432222334689999999998888866544
No 196
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=63.93 E-value=85 Score=26.12 Aligned_cols=109 Identities=12% Similarity=0.142 Sum_probs=54.5
Q ss_pred CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
++++.++-|.. ...+..||.+.. .+..++........-.-+|+..++||..+. ...+..||..+.+
T Consensus 71 g~~favi~g~~------~~~v~lyd~~~~---~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~---~G~l~~wd~~~~~-- 136 (194)
T PF08662_consen 71 GNEFAVIYGSM------PAKVTLYDVKGK---KIFSFGTQPRNTISWSPDGRFLVLAGFGNL---NGDLEFWDVRKKK-- 136 (194)
T ss_pred CCEEEEEEccC------CcccEEEcCccc---EeEeecCCCceEEEECCCCCEEEEEEccCC---CcEEEEEECCCCE--
Confidence 45565664541 236888998633 333333322233333348888888887543 2479999987444
Q ss_pred EccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 325 YKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 325 ~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
.+....... ...+.- +|+-++..........-+.+.+|+...+
T Consensus 137 ~i~~~~~~~--~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 137 KISTFEHSD--ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EeeccccCc--EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 333332221 122222 5665555433111222344555555443
No 197
>KOG3863|consensus
Probab=63.34 E-value=0.76 Score=44.48 Aligned_cols=36 Identities=47% Similarity=0.796 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccc
Q psy2979 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44 (400)
Q Consensus 4 ~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~ 44 (400)
|+..++.+|+...+||+++.+..+.|.+|| |+.||.
T Consensus 1 v~~~~~~qr~~~~~~~~~~~~~~~~f~~~~-----~~e~~~ 36 (604)
T KOG3863|consen 1 VLLSLNDQRKKDVLCDVTAFVERQGFRAHR-----CSEYFT 36 (604)
T ss_pred CCccccccccccccchhHHHHhccccccee-----ccchhh
Confidence 356789999999999999999999999999 999995
No 198
>KOG1963|consensus
Probab=62.29 E-value=1.9e+02 Score=29.67 Aligned_cols=96 Identities=16% Similarity=0.174 Sum_probs=52.8
Q ss_pred cceEEEEeCCCCceeeccCC--CCCceeeeEEEEC---CeEEEEcCcCCCCCCCCeEEEE------ECCCCeEEEccCCc
Q psy2979 262 IEQVQRYNPKVNQWQDLAPM--LIPRSGAAICALD---SCIYVLGGWHASTENTNRVECY------HIAENTWEYKSPMK 330 (400)
Q Consensus 262 ~~~v~~yd~~~~~W~~~~~~--~~~r~~~~~~~~~---~~iyv~GG~~~~~~~~~~v~~y------d~~~~~W~~~~~~~ 330 (400)
.-..|.|++...+|.-.... |..-..-+++..+ ....+..|.++ .-++|++ .+....|...+--.
T Consensus 431 ~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg----~~KiW~~~~~~n~~k~~s~W~c~~i~s 506 (792)
T KOG1963|consen 431 SLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG----DFKIWVFTDDSNIYKKSSNWTCKAIGS 506 (792)
T ss_pred EEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC----eEEEEEEecccccCcCccceEEeeeec
Confidence 45789999999999877643 3333333333321 11233333222 4578888 66677788765332
Q ss_pred CccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 331 EKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 331 ~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
..+...+++.. +|.+..+|-. +.|..||+.+
T Consensus 507 y~k~~i~a~~fs~dGslla~s~~-------~~Itiwd~~~ 539 (792)
T KOG1963|consen 507 YHKTPITALCFSQDGSLLAVSFD-------DTITIWDYDT 539 (792)
T ss_pred cccCcccchhhcCCCcEEEEecC-------CEEEEecCCC
Confidence 22222223333 6677666533 4677777766
No 199
>KOG0647|consensus
Probab=62.14 E-value=1.2e+02 Score=27.18 Aligned_cols=171 Identities=13% Similarity=0.141 Sum_probs=80.9
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCC-ceEEc--cCCcccceeeeEEEE--CCeEEEEEeecCEEEEEECCCCCeEEccC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTK-VWKTL--SCLPFAISKHGLVVS--GRNTIYCLDIVDIVYVAASMHKILHSLGS 184 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~-~w~~~--~~~~~~~~~~~~~~~--~~~~iyv~~~~~~~~~yd~~~~~w~~~~~ 184 (400)
+.++..|.++ +++.+|+.... ....- -.++.|.. .++-. +.+ +|.....+.+-.+|+.+++-.+++.
T Consensus 40 ~~~~~A~SWD-----~tVR~wevq~~g~~~~ka~~~~~~PvL--~v~Wsddgsk-Vf~g~~Dk~~k~wDL~S~Q~~~v~~ 111 (347)
T KOG0647|consen 40 DNLLAAGSWD-----GTVRIWEVQNSGQLVPKAQQSHDGPVL--DVCWSDDGSK-VFSGGCDKQAKLWDLASGQVSQVAA 111 (347)
T ss_pred CceEEecccC-----CceEEEEEecCCcccchhhhccCCCeE--EEEEccCCce-EEeeccCCceEEEEccCCCeeeeee
Confidence 4566677776 45666665542 22211 11222222 22222 333 6666777888999999997766654
Q ss_pred CCCc-ceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcc
Q psy2979 185 LKFD-FDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIE 263 (400)
Q Consensus 185 ~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 263 (400)
-..| |.-+-+-..+-.+.+.|-++ .++-.+|+...+ .+..+.-|-..+++-+...-+.|.-+. +
T Consensus 112 Hd~pvkt~~wv~~~~~~cl~TGSWD-----KTlKfWD~R~~~--pv~t~~LPeRvYa~Dv~~pm~vVata~--------r 176 (347)
T KOG0647|consen 112 HDAPVKTCHWVPGMNYQCLVTGSWD-----KTLKFWDTRSSN--PVATLQLPERVYAADVLYPMAVVATAE--------R 176 (347)
T ss_pred cccceeEEEEecCCCcceeEecccc-----cceeecccCCCC--eeeeeeccceeeehhccCceeEEEecC--------C
Confidence 3222 22111111122344555555 346666766443 233222222333444443333332221 3
Q ss_pred eEEEEeCCCCceee--c-cCCCCCceeeeEEEECCeEEEEcCcC
Q psy2979 264 QVQRYNPKVNQWQD--L-APMLIPRSGAAICALDSCIYVLGGWH 304 (400)
Q Consensus 264 ~v~~yd~~~~~W~~--~-~~~~~~r~~~~~~~~~~~iyv~GG~~ 304 (400)
.+..|+.+...=+. . .|+... ...-++.-+..-|.+|+.+
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q-~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQ-TRCVACFQDKDGFALGSIE 219 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccce-eeEEEEEecCCceEeeeec
Confidence 67888875443221 1 233222 1222333466778898874
No 200
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=60.50 E-value=1.5e+02 Score=27.96 Aligned_cols=43 Identities=16% Similarity=0.073 Sum_probs=31.7
Q ss_pred CCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEc
Q psy2979 210 SCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG 252 (400)
Q Consensus 210 ~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~G 252 (400)
+...+.++++|-.-+.=-++..+...-.-+++-..++..|++-
T Consensus 402 de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVT 444 (603)
T COG4880 402 DEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVT 444 (603)
T ss_pred CCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEE
Confidence 3456788888888887777777766666667777788888874
No 201
>KOG1898|consensus
Probab=59.88 E-value=2.4e+02 Score=30.05 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=95.1
Q ss_pred CCeEEEEeCCCCceEEccCCCCcccccEEEEe-----CCE-EEEEcCccccCCCC------cceEEEEeC--CCCceeec
Q psy2979 213 LDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-----EGM-LYVTGGAILEDGDG------IEQVQRYNP--KVNQWQDL 278 (400)
Q Consensus 213 ~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-----~~~-iyv~GG~~~~~~~~------~~~v~~yd~--~~~~W~~~ 278 (400)
.+.+..+|+.+++-...-.++..-..++++.+ +.. +..+|+.. +..- ...++.|+. ..++-+-+
T Consensus 852 ~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~--~~~l~~~~~~~g~~ytyk~~~~g~~lell 929 (1205)
T KOG1898|consen 852 VSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVAT--TEQLDSKSISSGFVYTYKFVRNGDKLELL 929 (1205)
T ss_pred cceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeec--cccccccccCCCceEEEEEEecCceeeee
Confidence 34577788887766555555544333333322 222 44445442 1111 223555544 33444444
Q ss_pred cCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcC-ccCcceEEEECCEEEEEcCccCCCCC
Q psy2979 279 APMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKE-KRYRPGIAVIDGKIYVLGGEEGWDGY 357 (400)
Q Consensus 279 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~lyv~GG~~~~~~~ 357 (400)
.....+-.-++++-..|.+++--| +.+..||...++-........ +..-........+|+| |-. +.
T Consensus 930 h~T~~~~~v~Ai~~f~~~~LagvG--------~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~V-gD~----qe 996 (1205)
T KOG1898|consen 930 HKTEIPGPVGAICPFQGRVLAGVG--------RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVV-GDI----QE 996 (1205)
T ss_pred eccCCCccceEEeccCCEEEEecc--------cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEE-eec----cc
Confidence 444444444667777775554333 578899988776443332222 2222233444566655 332 22
Q ss_pred CCeEEEEECCCCcEEEecCCCCCCCceeeEEEcccccccc
Q psy2979 358 HDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 358 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
.-...+|+++.|+.-....-|.||.-..+..++..-+...
T Consensus 997 SV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvaga 1036 (1205)
T KOG1898|consen 997 SVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDTVAGA 1036 (1205)
T ss_pred eEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCceeec
Confidence 3456789999999999988899999888888876554433
No 202
>KOG0266|consensus
Probab=59.81 E-value=1.7e+02 Score=28.23 Aligned_cols=106 Identities=16% Similarity=0.276 Sum_probs=59.8
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCC-c-eEEccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKN-E-WSYIEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~-~-W~~~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
+++ |+++|..+ .++.+||...+ . -..+...+... ++++ .-.+++++.|+. |+ .|..+|..+.+
T Consensus 214 d~~-~l~s~s~D----~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~---D~----tvriWd~~~~~ 279 (456)
T KOG0266|consen 214 DGS-YLLSGSDD----KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSD---DG----TVRIWDVRTGE 279 (456)
T ss_pred CCc-EEEEecCC----ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecC---CC----cEEEEeccCCe
Confidence 445 55555432 45888888444 2 23333334333 2222 235588888888 54 79999998844
Q ss_pred eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 275 WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 275 W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
-...-..-...-......-++.+++.+.. ...+..||..++.-
T Consensus 280 ~~~~l~~hs~~is~~~f~~d~~~l~s~s~------d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 280 CVRKLKGHSDGISGLAFSPDGNLLVSASY------DGTIRVWDLETGSK 322 (456)
T ss_pred EEEeeeccCCceEEEEECCCCCEEEEcCC------CccEEEEECCCCce
Confidence 33221111122222233336777777765 45788999988874
No 203
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=59.65 E-value=1.2e+02 Score=26.52 Aligned_cols=167 Identities=16% Similarity=0.200 Sum_probs=82.3
Q ss_pred CCCeEEccCCCCc--------ceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCC-CCceEEccCCCCc-cccc-EEEE-
Q psy2979 176 HKILHSLGSLKFD--------FDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPT-KNEWSYIEPMKLA-VTSP-AVVA- 243 (400)
Q Consensus 176 ~~~w~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~l~~~-~~~~-~~~~- 243 (400)
..+|.....++.. -....+..-++.+++..=............|... -.+|+.....+.. .... +.+.
T Consensus 88 G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~ 167 (275)
T PF13088_consen 88 GKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVEL 167 (275)
T ss_dssp TSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEE
T ss_pred CCCCCCccccccccccceeccceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEEC
Confidence 4579876544321 1111233337787776211111112333444444 4579888766422 3333 3332
Q ss_pred eCCEEEEEcCccccCCCCcceEEEEeCC-CCceeecc--CCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECC
Q psy2979 244 HEGMLYVTGGAILEDGDGIEQVQRYNPK-VNQWQDLA--PMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~-~~~W~~~~--~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
-+|.|+++--. ... ......+... ..+|+... .+|.+.....++.+ ++.++++........ ...+..-.-.
T Consensus 168 ~dG~l~~~~R~---~~~-~~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~-~l~l~~S~D~ 242 (275)
T PF13088_consen 168 PDGRLLAVFRT---EGN-DDIYISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRS-NLSLYVSEDG 242 (275)
T ss_dssp TTSEEEEEEEE---CSS-TEEEEEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSE-EEEEEEECTT
T ss_pred CCCcEEEEEEc---cCC-CcEEEEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCC-ceEEEEEeCC
Confidence 36788887543 211 1223333333 56799865 55666555555554 668888876222221 2233333333
Q ss_pred CCeEEEccCCcCcc----CcceEEEE-CCEEEE
Q psy2979 320 ENTWEYKSPMKEKR----YRPGIAVI-DGKIYV 347 (400)
Q Consensus 320 ~~~W~~~~~~~~~~----~~~~~~~~-~~~lyv 347 (400)
..+|.....+.... .++.++.. +|+|||
T Consensus 243 g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 243 GKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred CCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 67898766544333 34445555 679986
No 204
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=59.09 E-value=93 Score=24.98 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=47.6
Q ss_pred EEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccc----ccEEEEe-CCEEEEEcCccccCCCCcceEEEEe
Q psy2979 195 AMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVT----SPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYN 269 (400)
Q Consensus 195 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~----~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd 269 (400)
+.++|.+|-++..........+..||..+.+.....++|.... ...+.++ ++.+-++--. .....-.+|..+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~---~~~~~~~IWvm~ 78 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQC---DETSKIEIWVMK 78 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEec---cCCccEEEEEEe
Confidence 4578888887765543333368999999999944444553333 2233233 6667666322 111124666655
Q ss_pred ---CCCCceeecc
Q psy2979 270 ---PKVNQWQDLA 279 (400)
Q Consensus 270 ---~~~~~W~~~~ 279 (400)
....+|+++-
T Consensus 79 ~~~~~~~SWtK~~ 91 (164)
T PF07734_consen 79 KYGYGKESWTKLF 91 (164)
T ss_pred eeccCcceEEEEE
Confidence 2367899874
No 205
>KOG0646|consensus
Probab=59.08 E-value=75 Score=30.01 Aligned_cols=135 Identities=8% Similarity=0.085 Sum_probs=69.8
Q ss_pred cEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEE-----EECCeEEEEcCcCCCCCCCCeE
Q psy2979 239 PAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAIC-----ALDSCIYVLGGWHASTENTNRV 313 (400)
Q Consensus 239 ~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-----~~~~~iyv~GG~~~~~~~~~~v 313 (400)
++++..+.--|++||.. ...++++...+..--.+ -+..+..+ .-+|..++.||.++ .|
T Consensus 85 ~al~s~n~G~~l~ag~i------~g~lYlWelssG~LL~v-----~~aHYQ~ITcL~fs~dgs~iiTgskDg------~V 147 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTI------SGNLYLWELSSGILLNV-----LSAHYQSITCLKFSDDGSHIITGSKDG------AV 147 (476)
T ss_pred eeeecCCCceEEEeecc------cCcEEEEEeccccHHHH-----HHhhccceeEEEEeCCCcEEEecCCCc------cE
Confidence 45666666677777731 34788887766542211 11112211 12778888887743 45
Q ss_pred EEEECCCCeEEEc---cCCcC-ccCcceEEEE---------CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCC
Q psy2979 314 ECYHIAENTWEYK---SPMKE-KRYRPGIAVI---------DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSA 380 (400)
Q Consensus 314 ~~yd~~~~~W~~~---~~~~~-~~~~~~~~~~---------~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 380 (400)
..|+..+- -... .+.|. .-..|+..+. +.++|-.+- -..+-+||.+.+ ..+.....|
T Consensus 148 ~vW~l~~l-v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~-------D~t~k~wdlS~g--~LLlti~fp 217 (476)
T KOG0646|consen 148 LVWLLTDL-VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE-------DRTIKLWDLSLG--VLLLTITFP 217 (476)
T ss_pred EEEEEEee-cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC-------CceEEEEEeccc--eeeEEEecC
Confidence 44443210 0000 11221 1123333332 223333221 256788999888 344455567
Q ss_pred CCceeeEEEcccccccccCC
Q psy2979 381 RSWLGCVPLQIHKSQFVDKS 400 (400)
Q Consensus 381 r~~~~~~~~~~~~~~~~~~~ 400 (400)
+.-+++++-.....+|+|++
T Consensus 218 ~si~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTE 237 (476)
T ss_pred CcceeEEEcccccEEEecCC
Confidence 77777777777777787764
No 206
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=58.97 E-value=1.4e+02 Score=27.04 Aligned_cols=191 Identities=15% Similarity=0.122 Sum_probs=92.4
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCc-eEEcc----CCCCcc
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNE-WSYIE----PMKLAV 236 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~----~l~~~~ 236 (400)
...+.++.+||.+++-+....+.. ..+.... ++.|.+.. ..+..+++.++. |+.+. ..+..|
T Consensus 44 I~~~~i~r~~~~~g~~~~~~~p~~---~~~~~~~d~~g~Lv~~~--------~g~~~~~~~~~~~~t~~~~~~~~~~~~r 112 (307)
T COG3386 44 ILGGRIHRLDPETGKKRVFPSPGG---FSSGALIDAGGRLIACE--------HGVRLLDPDTGGKITLLAEPEDGLPLNR 112 (307)
T ss_pred CCCCeEEEecCCcCceEEEECCCC---cccceeecCCCeEEEEc--------cccEEEeccCCceeEEeccccCCCCcCC
Confidence 344678888887665433332211 1222233 33444431 235566665443 35553 344566
Q ss_pred cccEEEEeCCEEEEEcCc---cccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECC-eEEEEcCcCCCCCCCC
Q psy2979 237 TSPAVVAHEGMLYVTGGA---ILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDS-CIYVLGGWHASTENTN 311 (400)
Q Consensus 237 ~~~~~~~~~~~iyv~GG~---~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~ 311 (400)
.+=..+.-+|.+|+-.-. ....... ...+|++||. ....++..-.....+.-+..-++ .+|+.-=. .+
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~------~~ 185 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP------AN 185 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeCC------CC
Confidence 666777778888875322 0001112 5689999994 44544432211112222223344 66666532 46
Q ss_pred eEEEEECCC--------CeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC
Q psy2979 312 RVECYHIAE--------NTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS 379 (400)
Q Consensus 312 ~v~~yd~~~--------~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 379 (400)
.+++|+... +.+..... ..+.---.++--+|.+|+.... .+ ..|.+|+|....-.. -.+|.
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~-~g----~~v~~~~pdG~l~~~-i~lP~ 254 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVW-GG----GRVVRFNPDGKLLGE-IKLPV 254 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccC-CCCCCCceEEeCCCCEEEeccc-CC----ceEEEECCCCcEEEE-EECCC
Confidence 788886653 01111111 1111111122337889975443 21 478999998433333 23453
No 207
>KOG1898|consensus
Probab=58.88 E-value=2.5e+02 Score=29.94 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=67.2
Q ss_pred EEEEeCCCC--ceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCC-CceeeeEEE
Q psy2979 216 VERYDPTKN--EWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI-PRSGAAICA 292 (400)
Q Consensus 216 v~~yd~~~~--~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~ 292 (400)
++.|+...+ +...+..-+.+-.-++.+-..|.+++--|. .+..||...++--+...... |..-.....
T Consensus 914 ~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG~---------~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt 984 (1205)
T KOG1898|consen 914 VYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVGR---------FLRLYDLGKKKLLRKCELKFIPNRISSIQT 984 (1205)
T ss_pred eEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEeccc---------EEEEeeCChHHHHhhhhhccCceEEEEEee
Confidence 555554432 344443333334445666677766655454 68889987776444333332 322233333
Q ss_pred ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEEC
Q psy2979 293 LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVID 342 (400)
Q Consensus 293 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 342 (400)
...+|++ |-... .-.+.+|+++.++....+.-|.+|.-..+..++
T Consensus 985 ~~~RI~V-gD~qe----SV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD 1029 (1205)
T KOG1898|consen 985 YGARIVV-GDIQE----SVHFVRYRREDNQLIVFADDPVPRHVTALELLD 1029 (1205)
T ss_pred cceEEEE-eeccc----eEEEEEEecCCCeEEEEeCCCccceeeEEEEec
Confidence 4556655 33211 346889999999999999999998877766664
No 208
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=58.49 E-value=1.7e+02 Score=27.92 Aligned_cols=148 Identities=11% Similarity=0.045 Sum_probs=74.9
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL 293 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 293 (400)
..++.+|+.+++=..+...+..-..+...--+.+|....-. ++ ...++.+|..+.+-.++...... ..+....-
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~r---dg--~~~iy~~dl~~~~~~~Lt~~~gi-~~~Ps~sp 291 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSR---DG--SPDIYLMDLDGKNLPRLTNGFGI-NTSPSWSP 291 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECC---CC--CccEEEEcCCCCcceecccCCcc-ccCccCCC
Confidence 45667777776655544433222222322233334333322 33 45899999988874443332221 11223333
Q ss_pred CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc-E
Q psy2979 294 DS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS-W 371 (400)
Q Consensus 294 ~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-W 371 (400)
+| +|+......+ ...++.||++..+=+.+..-..... .....-+|+.+++-+. ..+. .+|..+|+.++. |
T Consensus 292 dG~~ivf~Sdr~G----~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~-~~g~--~~i~~~~~~~~~~~ 363 (425)
T COG0823 292 DGSKIVFTSDRGG----RPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESS-SGGQ--WDIDKNDLASGGKI 363 (425)
T ss_pred CCCEEEEEeCCCC----CcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEec-cCCc--eeeEEeccCCCCcE
Confidence 44 4444432211 4589999998887555543222222 2222224444444333 2111 678899998877 8
Q ss_pred EEec
Q psy2979 372 EIMS 375 (400)
Q Consensus 372 ~~~~ 375 (400)
+.+.
T Consensus 364 ~~lt 367 (425)
T COG0823 364 RILT 367 (425)
T ss_pred EEcc
Confidence 8874
No 209
>KOG2838|consensus
Probab=57.49 E-value=2.4 Score=36.55 Aligned_cols=19 Identities=37% Similarity=0.658 Sum_probs=17.3
Q ss_pred EEehhhHHHhhcCcccccc
Q psy2979 28 KFPAHRVVLAASSPYFKVL 46 (400)
Q Consensus 28 ~~~~hr~vLaa~s~yf~~m 46 (400)
++.||++|-||.|++||.+
T Consensus 262 eikahkai~aaRS~ffRnL 280 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNL 280 (401)
T ss_pred HHHHHHHHHHhhhHHHHHH
Confidence 6899999999999999865
No 210
>KOG1897|consensus
Probab=56.88 E-value=2.6e+02 Score=29.54 Aligned_cols=123 Identities=12% Similarity=0.092 Sum_probs=79.2
Q ss_pred eEEEEeCCC-CceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc-eeeccCCCCCceeeeEEE
Q psy2979 215 SVERYDPTK-NEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ-WQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 215 ~v~~yd~~~-~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~~~~~ 292 (400)
.+..|.... ++-+.++.+...-.-.+++.+||++.+.=|. ++..|+..+++ -+.-.....+-..-..-+
T Consensus 808 RIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~---------~vrLye~t~~~eLr~e~~~~~~~~aL~l~v 878 (1096)
T KOG1897|consen 808 RIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQ---------SVRLYEWTTERELRIECNISNPIIALDLQV 878 (1096)
T ss_pred eEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCc---------EEEEEEccccceehhhhcccCCeEEEEEEe
Confidence 344444444 6777777766666666778889998775554 68888765552 111112222322233334
Q ss_pred ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCc
Q psy2979 293 LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 293 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
.++.|++..-.. .-++..|....+....++.--.+++.-++..+++..|+.+-.
T Consensus 879 ~gdeI~VgDlm~-----Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~ 932 (1096)
T KOG1897|consen 879 KGDEIAVGDLMR-----SITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAEN 932 (1096)
T ss_pred cCcEEEEeeccc-----eEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecc
Confidence 477777754321 447888999999999999877788888888888888886543
No 211
>KOG0279|consensus
Probab=56.52 E-value=1.4e+02 Score=26.36 Aligned_cols=136 Identities=9% Similarity=0.158 Sum_probs=72.6
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--C--CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC--ccc
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--D--GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL--AVT 237 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~--~~~ 237 (400)
..-+.+..+|.....=.++..-.. |.--+.+.+ + +.+++-+|.+ ..+-.+|+.+-+-. ...+. .-.
T Consensus 124 SrDkTiklwnt~g~ck~t~~~~~~-~~WVscvrfsP~~~~p~Ivs~s~D-----ktvKvWnl~~~~l~--~~~~gh~~~v 195 (315)
T KOG0279|consen 124 SRDKTIKLWNTLGVCKYTIHEDSH-REWVSCVRFSPNESNPIIVSASWD-----KTVKVWNLRNCQLR--TTFIGHSGYV 195 (315)
T ss_pred CCcceeeeeeecccEEEEEecCCC-cCcEEEEEEcCCCCCcEEEEccCC-----ceEEEEccCCcchh--hccccccccE
Confidence 444455666655443333332111 322222222 2 5667777766 45777887765422 22221 112
Q ss_pred ccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEE
Q psy2979 238 SPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317 (400)
Q Consensus 238 ~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 317 (400)
....+..+|.+.+.||. ++ .+..+|....+= +-.+...-.-++++...++..+.-+. -.++-++|
T Consensus 196 ~t~~vSpDGslcasGgk---dg----~~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at------~~sIkIwd 260 (315)
T KOG0279|consen 196 NTVTVSPDGSLCASGGK---DG----EAMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAAT------ATSIKIWD 260 (315)
T ss_pred EEEEECCCCCEEecCCC---Cc----eEEEEEccCCce--eEeccCCCeEeeEEecCCceeEeecc------CCceEEEe
Confidence 22334469999999998 65 566666644332 33334333445566667777776665 34577777
Q ss_pred CCCCe
Q psy2979 318 IAENT 322 (400)
Q Consensus 318 ~~~~~ 322 (400)
.+++.
T Consensus 261 l~~~~ 265 (315)
T KOG0279|consen 261 LESKA 265 (315)
T ss_pred ccchh
Confidence 77665
No 212
>KOG2716|consensus
Probab=54.48 E-value=9.2 Score=32.68 Aligned_cols=74 Identities=18% Similarity=0.276 Sum_probs=55.6
Q ss_pred eEEEECCeEEehhhHHHhhcCccccccceeecCC---------CCH-----HHHHHHhhhcc--cccCchhHHHHHHHHH
Q psy2979 20 VTLCVDGSKFPAHRVVLAASSPYFKVLETIRLPQ---------LSP-----YFLHDCVEQCA--IIKNNPQCAQLVEEAK 83 (400)
Q Consensus 20 v~l~~~~~~~~~hr~vLaa~s~yf~~m~~vrl~~---------l~~-----~~l~~~i~~~~--l~~~~~~c~~~l~~a~ 83 (400)
|.|-|+|..|.-.+.-|--..-+|+.|-..+++. ++. +.+++++..+. |-.+..++++++.+|.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~ 86 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKELLREAE 86 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHHHHHHH
Confidence 4588999999999999999888999997777652 122 26778888544 4456777889999998
Q ss_pred hcCCCccccc
Q psy2979 84 LFHLLPDRRS 93 (400)
Q Consensus 84 ~~~~~~~~~~ 93 (400)
.|.+....+.
T Consensus 87 fYlL~~Lv~~ 96 (230)
T KOG2716|consen 87 FYLLDGLVEL 96 (230)
T ss_pred HhhHHHHHHH
Confidence 8866555443
No 213
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=54.29 E-value=52 Score=23.43 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=42.8
Q ss_pred eEEEECCeEEehhhHHHhhc-Cccccccceee------------cCCCCHH---HHHHHhhh-cccccC-chhHHHHHHH
Q psy2979 20 VTLCVDGSKFPAHRVVLAAS-SPYFKVLETIR------------LPQLSPY---FLHDCVEQ-CAIIKN-NPQCAQLVEE 81 (400)
Q Consensus 20 v~l~~~~~~~~~hr~vLaa~-s~yf~~m~~vr------------l~~l~~~---~l~~~i~~-~~l~~~-~~~c~~~l~~ 81 (400)
|.|.|+|+.|..-+..|... ..+|..|...+ |-.=+++ .+++++.+ ..+... ......++++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~E 80 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPIPDEICLEELLEE 80 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB---TTS-HHHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccCCCCchhHHHHHHH
Confidence 67999999999999999844 44776663321 2233443 67788888 666553 3445667788
Q ss_pred HHhcCCC
Q psy2979 82 AKLFHLL 88 (400)
Q Consensus 82 a~~~~~~ 88 (400)
|..|.+.
T Consensus 81 a~fy~l~ 87 (94)
T PF02214_consen 81 AEFYGLD 87 (94)
T ss_dssp HHHHT-H
T ss_pred HHHcCCC
Confidence 8766543
No 214
>KOG0274|consensus
Probab=53.55 E-value=2.4e+02 Score=27.99 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=71.0
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCC-CcceeeeEEEECC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLK-FDFDVSGIAMLDG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVT 237 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~ 237 (400)
++.......+-.+|+.+.+. +..+. ....-.++ .+++ ...+-|+.+ .++..+|+.+.+ ..+-.++....
T Consensus 344 lvsgs~d~~v~VW~~~~~~c--l~sl~gH~~~V~sl-~~~~~~~~~Sgs~D-----~~IkvWdl~~~~-~c~~tl~~h~~ 414 (537)
T KOG0274|consen 344 LVSGSYDGTVKVWDPRTGKC--LKSLSGHTGRVYSL-IVDSENRLLSGSLD-----TTIKVWDLRTKR-KCIHTLQGHTS 414 (537)
T ss_pred EEEEecCceEEEEEhhhcee--eeeecCCcceEEEE-EecCcceEEeeeec-----cceEeecCCchh-hhhhhhcCCcc
Confidence 44444445678888875543 22222 11122222 3344 555555544 457888888774 11111221111
Q ss_pred ccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEE
Q psy2979 238 SPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317 (400)
Q Consensus 238 ~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 317 (400)
.-..-.+.+++++.+.. ++ .+..+|..+..=.+.-.-+ ......+.......++..+. ..++..||
T Consensus 415 ~v~~l~~~~~~Lvs~~a---D~----~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~~~~il~s~~------~~~~~l~d 480 (537)
T KOG0274|consen 415 LVSSLLLRDNFLVSSSA---DG----TIKLWDAEEGECLRTLEGR-HVGGVSALALGKEEILCSSD------DGSVKLWD 480 (537)
T ss_pred cccccccccceeEeccc---cc----cEEEeecccCceeeeeccC-CcccEEEeecCcceEEEEec------CCeeEEEe
Confidence 11222346777877776 54 6778887776654443322 22333333333455666655 45677777
Q ss_pred CCCCe
Q psy2979 318 IAENT 322 (400)
Q Consensus 318 ~~~~~ 322 (400)
..+.+
T Consensus 481 l~~~~ 485 (537)
T KOG0274|consen 481 LRSGT 485 (537)
T ss_pred cccCc
Confidence 76654
No 215
>KOG3881|consensus
Probab=52.28 E-value=1e+02 Score=28.52 Aligned_cols=93 Identities=20% Similarity=0.095 Sum_probs=54.4
Q ss_pred cceEEEEEcCCCc--eEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEcc--CC-CCcceeeeEEEE-
Q psy2979 124 LRSVEGFCVKTKV--WKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLG--SL-KFDFDVSGIAML- 197 (400)
Q Consensus 124 ~~~~~~yd~~~~~--w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~--~~-~~~r~~~~~~~~- 197 (400)
...+..||++.++ ...++-+..+.+..+....++. ||+.+....+..||..+++-.... .. -..|. +...
T Consensus 225 ~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~-Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs---ih~hp 300 (412)
T KOG3881|consen 225 YHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNF-IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS---IHCHP 300 (412)
T ss_pred ceeEEEecCcccCcceeEeccccCcceeeeecCCCcE-EEEecccchhheecccCceeeccccCCccCCcce---EEEcC
Confidence 3567788888765 2233334445555555555667 888888888999998877543211 11 01121 1112
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCc
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNE 225 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 225 (400)
...+.+.+|.+ +-+-+||.++++
T Consensus 301 ~~~~las~GLD-----RyvRIhD~ktrk 323 (412)
T KOG3881|consen 301 THPVLASCGLD-----RYVRIHDIKTRK 323 (412)
T ss_pred CCceEEeeccc-----eeEEEeecccch
Confidence 33577777766 347788888743
No 216
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=52.04 E-value=1.3e+02 Score=25.49 Aligned_cols=100 Identities=15% Similarity=0.087 Sum_probs=64.0
Q ss_pred cEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC-CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEE
Q psy2979 239 PAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML-IPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317 (400)
Q Consensus 239 ~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 317 (400)
.++...+|+||..-|. -+ .+.+.++|..+.+-..-.+++ ...++-+.+.+++.+|..-=. ....+.||
T Consensus 49 QGL~~~~g~i~esTG~---yg--~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~------egvaf~~d 117 (262)
T COG3823 49 QGLEYLDGHILESTGL---YG--FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWK------EGVAFKYD 117 (262)
T ss_pred cceeeeCCEEEEeccc---cc--cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEec------cceeEEEC
Confidence 3566778899988776 33 357899999866532222333 445667888889999998633 23566777
Q ss_pred CCCCeEEEccCCcCccCcceEEEECCEEEEEcCc
Q psy2979 318 IAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 318 ~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
+. ..+.+...+..-.+.+.+.-+..|.+.-|.
T Consensus 118 ~~--t~~~lg~~~y~GeGWgLt~d~~~LimsdGs 149 (262)
T COG3823 118 AD--TLEELGRFSYEGEGWGLTSDDKNLIMSDGS 149 (262)
T ss_pred hH--HhhhhcccccCCcceeeecCCcceEeeCCc
Confidence 54 344556666666666666666666555554
No 217
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=51.42 E-value=1.9e+02 Score=26.23 Aligned_cols=206 Identities=13% Similarity=0.122 Sum_probs=100.0
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCe-EEccCC----CCcceeeeEEEECC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKIL-HSLGSL----KFDFDVSGIAMLDG 199 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w-~~~~~~----~~~r~~~~~~~~~~ 199 (400)
..++.||+.+++-..+.. |... .+....+.. -.++.....+..+++.+..- +.+... +.-|.+=..+--++
T Consensus 47 ~~i~r~~~~~g~~~~~~~-p~~~--~~~~~~d~~-g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG 122 (307)
T COG3386 47 GRIHRLDPETGKKRVFPS-PGGF--SSGALIDAG-GRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG 122 (307)
T ss_pred CeEEEecCCcCceEEEEC-CCCc--ccceeecCC-CeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC
Confidence 567888887665443322 2111 223333222 22223344556666654433 554443 23355555555577
Q ss_pred EEEEEccc------CCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCC-EEEEEcCccccCCCCcceEEEEeCCC
Q psy2979 200 FVYAVGGW------DGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG-MLYVTGGAILEDGDGIEQVQRYNPKV 272 (400)
Q Consensus 200 ~iyv~GG~------~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~ 272 (400)
.+|+-.-. .......+++++||. ++...+..=.....+--+-.-++ .+|+.--. .+.+++|+...
T Consensus 123 ~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~-------~~~i~r~~~d~ 194 (307)
T COG3386 123 RIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP-------ANRIHRYDLDP 194 (307)
T ss_pred CEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeCC-------CCeEEEEecCc
Confidence 77764322 223445589999994 44444322111112212222333 67776433 45788886643
Q ss_pred C------c--eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEEC--
Q psy2979 273 N------Q--WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVID-- 342 (400)
Q Consensus 273 ~------~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-- 342 (400)
. + +... .....+--..++--+|.+|+.+... -..|.+|+|. ++=...-.+|. ...+++.++
T Consensus 195 ~~g~~~~~~~~~~~-~~~~G~PDG~~vDadG~lw~~a~~~-----g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~ 265 (307)
T COG3386 195 ATGPIGGRRGFVDF-DEEPGLPDGMAVDADGNLWVAAVWG-----GGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGP 265 (307)
T ss_pred ccCccCCcceEEEc-cCCCCCCCceEEeCCCCEEEecccC-----CceEEEECCC-CcEEEEEECCC--CCCccceEeCC
Confidence 1 0 1111 1111222233444478899755432 1379999998 33333334443 333444442
Q ss_pred --CEEEEEcCc
Q psy2979 343 --GKIYVLGGE 351 (400)
Q Consensus 343 --~~lyv~GG~ 351 (400)
+.|||....
T Consensus 266 ~~~~L~iTs~~ 276 (307)
T COG3386 266 DLNTLYITSAR 276 (307)
T ss_pred CcCEEEEEecC
Confidence 678888755
No 218
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=51.39 E-value=1.8e+02 Score=25.90 Aligned_cols=214 Identities=13% Similarity=0.090 Sum_probs=102.3
Q ss_pred eEEEEEcCCCceEEccC-CcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCc--ceeeeEEEECCEEE
Q psy2979 126 SVEGFCVKTKVWKTLSC-LPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD--FDVSGIAMLDGFVY 202 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~-~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~--r~~~~~~~~~~~iy 202 (400)
.+..-+-.-+.|.+++. ...+-.-.++..++..+-+++.....++.-+--...|+.+.+-..+ ..+-...+.+|...
T Consensus 106 qll~T~DgGqsWARi~~~e~~eg~~~sI~f~d~q~g~m~gd~Gail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~dng~v 185 (339)
T COG4447 106 QLLHTTDGGQSWARIPLSEKLEGFPDSITFLDDQRGEMLGDQGAILKTTDGGKNWKALVEKAVGLAVPNEIARSADNGYV 185 (339)
T ss_pred eEEEecCCCcchhhchhhcCCCCCcceeEEecchhhhhhcccceEEEecCCcccHhHhcccccchhhhhhhhhhccCCeE
Confidence 34444444557887752 1112222344445554344443344555545555678876543222 11112233455555
Q ss_pred EEcccCCCCCCCeEEE-EeCCCCceEEccCCCCcccccEE-EEeCC--EEEEEcCccccCCCCcceEEEEeCCCCceeec
Q psy2979 203 AVGGWDGSCRLDSVER-YDPTKNEWSYIEPMKLAVTSPAV-VAHEG--MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL 278 (400)
Q Consensus 203 v~GG~~~~~~~~~v~~-yd~~~~~W~~~~~l~~~~~~~~~-~~~~~--~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~ 278 (400)
++|-.. +.++ .+.-...|..-.+ ...|.--++ ..-++ -+++.||.. .-....+..+.|+++
T Consensus 186 aVg~rG------s~f~T~~aGqt~~~~~g~-~s~~~letmg~adag~~g~la~g~qg--------~~f~~~~~gD~wsd~ 250 (339)
T COG4447 186 AVGARG------SFFSTWGAGQTVWLPHGR-NSSRRLETMGLADAGSKGLLARGGQG--------DQFSWVCGGDEWSDQ 250 (339)
T ss_pred EEecCc------ceEecCCCCccEEeccCC-CccchhcccccccCCccceEEEcccc--------ceeecCCCccccccc
Confidence 555422 1221 2333333321111 111111111 11223 467777762 345566778889987
Q ss_pred c-CCCCCceeeeEE----EECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccC-cceEEEE-CCEEEEEcCc
Q psy2979 279 A-PMLIPRSGAAIC----ALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRY-RPGIAVI-DGKIYVLGGE 351 (400)
Q Consensus 279 ~-~~~~~r~~~~~~----~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~-~~~~~~~-~~~lyv~GG~ 351 (400)
+ +-...|...+.. .-.+.+|+.|+. ..+..-.-....|++....+.... .++++.. .++.+++|-.
T Consensus 251 ~~~~~~g~~~~Gl~d~a~~a~~~v~v~G~g-------Gnvl~StdgG~t~skd~g~~er~s~l~~V~~ts~~~~~l~Gq~ 323 (339)
T COG4447 251 GEPVNLGRRSWGLLDFAPRAPPEVWVSGIG-------GNVLASTDGGTTWSKDGGVEERVSNLYSVVFTSPKAGFLCGQK 323 (339)
T ss_pred ccchhcccCCCccccccccCCCCeEEeccC-------ccEEEecCCCeeEeccCChhhhhhhhheEEeccCCceEEEcCC
Confidence 5 222333333332 226789998873 233333334567887766554444 3444444 6778888743
Q ss_pred cCCCCCCCeEEEEECCC
Q psy2979 352 EGWDGYHDSIECYDVDN 368 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~ 368 (400)
.-+..|+|.+
T Consensus 324 -------Gvll~~n~~a 333 (339)
T COG4447 324 -------GVLLKYNPGA 333 (339)
T ss_pred -------ceEEEecCcc
Confidence 2356677654
No 219
>KOG0649|consensus
Probab=51.33 E-value=1.6e+02 Score=25.50 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=63.3
Q ss_pred ceEEccCCCC-----cccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeE
Q psy2979 225 EWSYIEPMKL-----AVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCI 297 (400)
Q Consensus 225 ~W~~~~~l~~-----~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~i 297 (400)
-|+..+|+.. |--+..... -.|.|+..||. ..+++.|.++.+.+..-. ...-+-|+++.- .+.-
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD--------~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD--------GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC--------eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcc
Confidence 4666666543 222222222 46888888886 378999999988776521 122344555553 2223
Q ss_pred EEEcCcCCCCCCCCeEEEEECCCCeEEEcc-CC-----cCccC--cceEEEECCEEEEEcCc
Q psy2979 298 YVLGGWHASTENTNRVECYHIAENTWEYKS-PM-----KEKRY--RPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 298 yv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~-----~~~~~--~~~~~~~~~~lyv~GG~ 351 (400)
.+.|+. ..++..+|.++.+-..+- +. -.|.. .-++.+.+..-.+.||-
T Consensus 171 ilsG~E------DGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG 226 (325)
T KOG0649|consen 171 ILSGAE------DGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG 226 (325)
T ss_pred eeecCC------CccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC
Confidence 344554 457888899888765542 21 11222 23566666666666664
No 220
>PRK02888 nitrous-oxide reductase; Validated
Probab=49.37 E-value=2.9e+02 Score=27.82 Aligned_cols=41 Identities=10% Similarity=0.034 Sum_probs=34.4
Q ss_pred CeEEEEECCC---CcEEEecCCCCCCCceeeEEEcccccccccC
Q psy2979 359 DSIECYDVDN---DSWEIMSHLPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 359 ~~v~~yd~~~---~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
+.|-+.|..+ ..+..+..+|.+++-|++.+-.+..++++.|
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVan 339 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANG 339 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeC
Confidence 3688999887 2467778899999999999999999998876
No 221
>PRK10115 protease 2; Provisional
Probab=48.51 E-value=3.2e+02 Score=28.07 Aligned_cols=152 Identities=11% Similarity=0.074 Sum_probs=79.5
Q ss_pred eecCEEEEEEC--CCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCC-CCceEEccCCCCcccccE
Q psy2979 164 DIVDIVYVAAS--MHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPT-KNEWSYIEPMKLAVTSPA 240 (400)
Q Consensus 164 ~~~~~~~~yd~--~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~l~~~~~~~~ 240 (400)
...+.++.++. ....|..+-+.+.. ..+.....++.+|+.--... ....+...+.. .++|+.+-+-.....--.
T Consensus 244 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ly~~tn~~~--~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~ 320 (686)
T PRK10115 244 ATTSEVLLLDAELADAEPFVFLPRRKD-HEYSLDHYQHRFYLRSNRHG--KNFGLYRTRVRDEQQWEELIPPRENIMLEG 320 (686)
T ss_pred CccccEEEEECcCCCCCceEEEECCCC-CEEEEEeCCCEEEEEEcCCC--CCceEEEecCCCcccCeEEECCCCCCEEEE
Confidence 33356777773 23444333222221 22233344678888754432 22346666666 578988755422222224
Q ss_pred EEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEE-E--EC-CeEEE-EcCcCCCCCCCCeEEE
Q psy2979 241 VVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAIC-A--LD-SCIYV-LGGWHASTENTNRVEC 315 (400)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~--~~-~~iyv-~GG~~~~~~~~~~v~~ 315 (400)
+...++.+++..-. ++ ...++.+|..+.....++ ++.+....... . .+ +.+++ +.+... ...++.
T Consensus 321 ~~~~~~~l~~~~~~---~g--~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~----P~~~y~ 390 (686)
T PRK10115 321 FTLFTDWLVVEERQ---RG--LTSLRQINRKTREVIGIA-FDDPAYVTWIAYNPEPETSRLRYGYSSMTT----PDTLFE 390 (686)
T ss_pred EEEECCEEEEEEEe---CC--EEEEEEEcCCCCceEEec-CCCCceEeeecccCCCCCceEEEEEecCCC----CCEEEE
Confidence 44557777776543 33 457888887666555553 12222221111 1 11 33333 333222 568999
Q ss_pred EECCCCeEEEccC
Q psy2979 316 YHIAENTWEYKSP 328 (400)
Q Consensus 316 yd~~~~~W~~~~~ 328 (400)
||+.+++|+.+..
T Consensus 391 ~d~~~~~~~~l~~ 403 (686)
T PRK10115 391 LDMDTGERRVLKQ 403 (686)
T ss_pred EECCCCcEEEEEe
Confidence 9999998887764
No 222
>KOG0299|consensus
Probab=48.37 E-value=2.5e+02 Score=26.72 Aligned_cols=208 Identities=17% Similarity=0.136 Sum_probs=98.0
Q ss_pred CcEEEEEeccCCCcccceEEEEEcCCCceEEccCCccccee-eeEEEECC-eEEEEEeecCEEEEEECCCCCeEEccCCC
Q psy2979 109 INVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISK-HGLVVSGR-NTIYCLDIVDIVYVAASMHKILHSLGSLK 186 (400)
Q Consensus 109 ~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~-~~~~~~~~-~~iyv~~~~~~~~~yd~~~~~w~~~~~~~ 186 (400)
++..+++||.+ +.+.++++.+.+=.. .++-.|.. .+.+.-.+ ..+|.......+-.++........ .+-
T Consensus 213 Dgkylatgg~d-----~~v~Iw~~~t~ehv~--~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve--tly 283 (479)
T KOG0299|consen 213 DGKYLATGGRD-----RHVQIWDCDTLEHVK--VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE--TLY 283 (479)
T ss_pred CCcEEEecCCC-----ceEEEecCcccchhh--cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH--HHh
Confidence 45666777766 456677766644221 12222221 22233222 226666444444444443322211 110
Q ss_pred -CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCc-eEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcc
Q psy2979 187 -FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNE-WSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIE 263 (400)
Q Consensus 187 -~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 263 (400)
++-.-.++-.+ .++...+||.+ .++..|+....+ -...+ ..-+--+++.+|+.=||.|+. +|
T Consensus 284 GHqd~v~~IdaL~reR~vtVGgrD-----rT~rlwKi~eesqlifrg---~~~sidcv~~In~~HfvsGSd---nG---- 348 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRERCVTVGGRD-----RTVRLWKIPEESQLIFRG---GEGSIDCVAFINDEHFVSGSD---NG---- 348 (479)
T ss_pred CCccceeeechhcccceEEecccc-----ceeEEEeccccceeeeeC---CCCCeeeEEEecccceeeccC---Cc----
Confidence 11111111112 45677788876 345555553322 11111 122333677789999999998 66
Q ss_pred eEEEEeCCCCce---eecc----C----CCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcC
Q psy2979 264 QVQRYNPKVNQW---QDLA----P----MLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKE 331 (400)
Q Consensus 264 ~v~~yd~~~~~W---~~~~----~----~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 331 (400)
+|..++..+.+= +.++ + ...++--.+++++ +..+++.|-.++ .-.+|.-...-.+-+.+.++|.
T Consensus 349 ~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G----~vrLW~i~~g~r~i~~l~~ls~ 424 (479)
T KOG0299|consen 349 SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSG----CVRLWKIEDGLRAINLLYSLSL 424 (479)
T ss_pred eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCC----ceEEEEecCCccccceeeeccc
Confidence 566666554431 1111 1 1122223344444 456666665433 3456666655556666667765
Q ss_pred ccCcceEE-EECCE
Q psy2979 332 KRYRPGIA-VIDGK 344 (400)
Q Consensus 332 ~~~~~~~~-~~~~~ 344 (400)
.-+--+.+ ..+|+
T Consensus 425 ~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 425 VGFVNSLAFSNSGK 438 (479)
T ss_pred ccEEEEEEEccCCC
Confidence 44433333 33566
No 223
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=48.15 E-value=1e+02 Score=27.22 Aligned_cols=60 Identities=13% Similarity=0.278 Sum_probs=38.8
Q ss_pred EEECCeEEEEcCcCCCCC-CCCeEEEEECC-CCeEEEccCCc-CccCcceEEEECCEEEEEcCc
Q psy2979 291 CALDSCIYVLGGWHASTE-NTNRVECYHIA-ENTWEYKSPMK-EKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 291 ~~~~~~iyv~GG~~~~~~-~~~~v~~yd~~-~~~W~~~~~~~-~~~~~~~~~~~~~~lyv~GG~ 351 (400)
...+|+.+|.|-...... ..+.|..|.-. .+.|+.++..| ....-+-.+-++|++ |+||.
T Consensus 33 F~~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~~~~~~LqDPF~t~I~gel-ifGGv 95 (298)
T PF08950_consen 33 FEYNGKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEGAPVFQLQDPFVTRIQGEL-IFGGV 95 (298)
T ss_dssp EEETTEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT---BS-EEEEEEEETTEE-EEEEE
T ss_pred eeECCEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCCcceEEecCcceeeECCEE-EEeeE
Confidence 456899999886543332 25778888776 89999998744 455666788889997 55775
No 224
>KOG0772|consensus
Probab=47.45 E-value=2.8e+02 Score=26.99 Aligned_cols=209 Identities=11% Similarity=0.111 Sum_probs=98.3
Q ss_pred ECCeEEEEEeecCEEEEEECCCCCeEEccC-------CCCcceeeeEEEE-------CCEEEEEcccCCCCCCCeEEEEe
Q psy2979 155 SGRNTIYCLDIVDIVYVAASMHKILHSLGS-------LKFDFDVSGIAML-------DGFVYAVGGWDGSCRLDSVERYD 220 (400)
Q Consensus 155 ~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~-------~~~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~v~~yd 220 (400)
.++. |+++......-.||-..-.|.+... |.. -.+|.+..- +...|+..+.++. +-.||
T Consensus 225 Tg~~-iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~n-TKGHia~lt~g~whP~~k~~FlT~s~Dgt-----lRiWd 297 (641)
T KOG0772|consen 225 TGDQ-ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYN-TKGHIAELTCGCWHPDNKEEFLTCSYDGT-----LRIWD 297 (641)
T ss_pred CCCe-EEEEecCcceeEEccCCceeeeeeccchhhhhhhc-cCCceeeeeccccccCcccceEEecCCCc-----EEEEe
Confidence 3555 7777666677778877666665332 211 112221111 2334555444432 33333
Q ss_pred CCC--CceEEcc--CCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCC-----C--cee
Q psy2979 221 PTK--NEWSYIE--PMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI-----P--RSG 287 (400)
Q Consensus 221 ~~~--~~W~~~~--~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-----~--r~~ 287 (400)
... .+-+.+. ++...|...+.|.. ++++ +.+|+. +| +|+.++. ..|..-+.+-. + -..
T Consensus 298 v~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~--DG----SIQ~W~~--~~~~v~p~~~vk~AH~~g~~It 368 (641)
T KOG0772|consen 298 VNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCL--DG----SIQIWDK--GSRTVRPVMKVKDAHLPGQDIT 368 (641)
T ss_pred cCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhccc--CC----ceeeeec--CCcccccceEeeeccCCCCcee
Confidence 221 1222222 23345666666665 5677 555553 55 5777775 44544333221 1 122
Q ss_pred eeEEEECCeEEEEcCcCCCCCCCCeEEEEECCC-----CeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEE
Q psy2979 288 AAICALDSCIYVLGGWHASTENTNRVECYHIAE-----NTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIE 362 (400)
Q Consensus 288 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~-----~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~ 362 (400)
.-.+..+|.+++.-|.++ ++-.+|... +.|+-++.+-.. .-++..-+.+|.+.|-..........++
T Consensus 369 si~FS~dg~~LlSRg~D~------tLKvWDLrq~kkpL~~~tgL~t~~~~--tdc~FSPd~kli~TGtS~~~~~~~g~L~ 440 (641)
T KOG0772|consen 369 SISFSYDGNYLLSRGFDD------TLKVWDLRQFKKPLNVRTGLPTPFPG--TDCCFSPDDKLILTGTSAPNGMTAGTLF 440 (641)
T ss_pred EEEeccccchhhhccCCC------ceeeeeccccccchhhhcCCCccCCC--CccccCCCceEEEecccccCCCCCceEE
Confidence 233444777777766643 333444332 235544432111 1123334788888885412222334577
Q ss_pred EEECCCCcEEEecCCCCCCCceeeEEE
Q psy2979 363 CYDVDNDSWEIMSHLPSARSWLGCVPL 389 (400)
Q Consensus 363 ~yd~~~~~W~~~~~~~~~r~~~~~~~~ 389 (400)
.||+.+ ...+..++..-.....|..
T Consensus 441 f~d~~t--~d~v~ki~i~~aSvv~~~W 465 (641)
T KOG0772|consen 441 FFDRMT--LDTVYKIDISTASVVRCLW 465 (641)
T ss_pred EEeccc--eeeEEEecCCCceEEEEee
Confidence 788654 3445444444333333333
No 225
>KOG4378|consensus
Probab=46.86 E-value=2.8e+02 Score=26.85 Aligned_cols=89 Identities=13% Similarity=0.126 Sum_probs=46.5
Q ss_pred eEEEEeCCCCc----eEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeE
Q psy2979 215 SVERYDPTKNE----WSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAI 290 (400)
Q Consensus 215 ~v~~yd~~~~~----W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~ 290 (400)
.|..||..... |.+.-. .|..+-+.+..+..|++.-|. | ..++.||.....-+..-.-..| ..++
T Consensus 188 ~VtlwDv~g~sp~~~~~~~Hs--AP~~gicfspsne~l~vsVG~---D----kki~~yD~~s~~s~~~l~y~~P--lstv 256 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHS--APCRGICFSPSNEALLVSVGY---D----KKINIYDIRSQASTDRLTYSHP--LSTV 256 (673)
T ss_pred eEEEEeccCCCcccchhhhcc--CCcCcceecCCccceEEEecc---c----ceEEEeecccccccceeeecCC--ccee
Confidence 36667765432 333322 233444555678889998888 4 5799999875543322111111 1122
Q ss_pred EEE-CCeEEEEcCcCCCCCCCCeEEEEECCC
Q psy2979 291 CAL-DSCIYVLGGWHASTENTNRVECYHIAE 320 (400)
Q Consensus 291 ~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~ 320 (400)
+.. +|.++++|-. ...+..||...
T Consensus 257 af~~~G~~L~aG~s------~G~~i~YD~R~ 281 (673)
T KOG4378|consen 257 AFSECGTYLCAGNS------KGELIAYDMRS 281 (673)
T ss_pred eecCCceEEEeecC------CceEEEEeccc
Confidence 222 4455555533 34677777653
No 226
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=45.13 E-value=44 Score=21.77 Aligned_cols=44 Identities=32% Similarity=0.495 Sum_probs=30.3
Q ss_pred eEEEE-CCeEEehhhHHHhhcCcccccc-------c-eeecCCCCHHHHHHHhh
Q psy2979 20 VTLCV-DGSKFPAHRVVLAASSPYFKVL-------E-TIRLPQLSPYFLHDCVE 64 (400)
Q Consensus 20 v~l~~-~~~~~~~hr~vLaa~s~yf~~m-------~-~vrl~~l~~~~l~~~i~ 64 (400)
|+|+. ||+.|...+.+. ..|.-++.| . .|.|+.++...|...++
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kVie 55 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIE 55 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhcccccccccCccCHHHHHHHHH
Confidence 45555 899999988876 467666655 2 48888999887765443
No 227
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=44.29 E-value=2.5e+02 Score=25.56 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=53.9
Q ss_pred cccce-eeeEEEECCeEEEEE--eec-----------CEEEEEECCCCCeEEcc-CCC-CcceeeeEEEECCEEEEEccc
Q psy2979 144 PFAIS-KHGLVVSGRNTIYCL--DIV-----------DIVYVAASMHKILHSLG-SLK-FDFDVSGIAMLDGFVYAVGGW 207 (400)
Q Consensus 144 ~~~~~-~~~~~~~~~~~iyv~--~~~-----------~~~~~yd~~~~~w~~~~-~~~-~~r~~~~~~~~~~~iyv~GG~ 207 (400)
|+.|+ -.+++..+++--||. ..+ +.=...|..+++-..-. +|| .||. .++++|+.-
T Consensus 148 ~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRW------hdgrLwvld-- 219 (335)
T TIGR03032 148 PEDRCHLNGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRW------YQGKLWLLN-- 219 (335)
T ss_pred ccCceeecceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcE------eCCeEEEEE--
Confidence 34444 367788888756765 111 11122344444322111 244 4565 468888873
Q ss_pred CCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCc
Q psy2979 208 DGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGA 254 (400)
Q Consensus 208 ~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~ 254 (400)
.....+..+|+.+++.+.+..+|..-.+ ++-. |.+.++|-.
T Consensus 220 ---sgtGev~~vD~~~G~~e~Va~vpG~~rG--L~f~-G~llvVgmS 260 (335)
T TIGR03032 220 ---SGRGELGYVDPQAGKFQPVAFLPGFTRG--LAFA-GDFAFVGLS 260 (335)
T ss_pred ---CCCCEEEEEcCCCCcEEEEEECCCCCcc--ccee-CCEEEEEec
Confidence 2345688999999999999877753333 2333 445555543
No 228
>KOG0647|consensus
Probab=42.82 E-value=2.5e+02 Score=25.22 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=52.7
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCc-ccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCcee
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLA-VTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 276 (400)
++.....||.+ ..+-.||+.+++=..+.--..+ +..|.+-..+-.+.+.|.. | +++--+|+... .
T Consensus 83 dgskVf~g~~D-----k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSW---D----KTlKfWD~R~~--~ 148 (347)
T KOG0647|consen 83 DGSKVFSGGCD-----KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSW---D----KTLKFWDTRSS--N 148 (347)
T ss_pred CCceEEeeccC-----CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEeccc---c----cceeecccCCC--C
Confidence 34444446655 4578899999987776533322 2222222233456677776 3 35666676532 2
Q ss_pred eccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 277 DLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 277 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
.+..+..|-..+++-+...-+.+.-+ .+.+..|+.+...
T Consensus 149 pv~t~~LPeRvYa~Dv~~pm~vVata-------~r~i~vynL~n~~ 187 (347)
T KOG0647|consen 149 PVATLQLPERVYAADVLYPMAVVATA-------ERHIAVYNLENPP 187 (347)
T ss_pred eeeeeeccceeeehhccCceeEEEec-------CCcEEEEEcCCCc
Confidence 33333333333344333333333222 3467777775543
No 229
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=42.50 E-value=3.5e+02 Score=26.75 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=53.1
Q ss_pred eEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcc
Q psy2979 312 RVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQI 391 (400)
Q Consensus 312 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 391 (400)
+-..||+..+-|..-..-....... ...-+|.+|-+... .+ .. ++.+++.+++.+.+...|..-...+.+...+
T Consensus 439 DNL~~d~~G~LwI~eD~~~~~~~l~-g~t~~G~~~~~~~~-~G---~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fspD 512 (524)
T PF05787_consen 439 DNLAFDPDGNLWIQEDGGGSNNNLP-GVTPDGEVYDFARN-DG---NN-VWAYDPDTGELKRFLVGPNGAEITGPCFSPD 512 (524)
T ss_pred CceEECCCCCEEEEeCCCCCCcccc-cccccCceeeeeec-cc---ce-eeeccccccceeeeccCCCCcccccceECCC
Confidence 4445788777776543222111111 12335666666433 11 12 8999999999999998899989999999998
Q ss_pred cccccc
Q psy2979 392 HKSQFV 397 (400)
Q Consensus 392 ~~~~~~ 397 (400)
...+|+
T Consensus 513 g~tlFv 518 (524)
T PF05787_consen 513 GRTLFV 518 (524)
T ss_pred CCEEEE
Confidence 888886
No 230
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=41.49 E-value=3.1e+02 Score=25.79 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=43.4
Q ss_pred CeEEEEeCCCCceEEc-cCCCCcccccEEEEeCCEEEEE-cCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEE
Q psy2979 214 DSVERYDPTKNEWSYI-EPMKLAVTSPAVVAHEGMLYVT-GGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAIC 291 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~-~~l~~~~~~~~~~~~~~~iyv~-GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~ 291 (400)
..+|..|.......++ ..++....+|---+.+|..+.+ +.. .+....-+..||+.+..=+.+.+|| .+.|-..
T Consensus 216 ~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~---~~~~~~~i~~~d~~t~~~~~~~~~p--~~~H~~s 290 (386)
T PF14583_consen 216 QRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT---PGGQDFWIAGYDPDTGERRRLMEMP--WCSHFMS 290 (386)
T ss_dssp -SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEE---TTT--EEEEEE-TTT--EEEEEEE---SEEEEEE
T ss_pred eEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeec---CCCCceEEEeeCCCCCCceEEEeCC--ceeeeEE
Confidence 3688888776655555 3344444444444445543333 322 2221446888999988655555554 5778888
Q ss_pred EECCeEEEEcCcCC
Q psy2979 292 ALDSCIYVLGGWHA 305 (400)
Q Consensus 292 ~~~~~iyv~GG~~~ 305 (400)
..++++++-.|.+.
T Consensus 291 s~Dg~L~vGDG~d~ 304 (386)
T PF14583_consen 291 SPDGKLFVGDGGDA 304 (386)
T ss_dssp -TTSSEEEEEE---
T ss_pred cCCCCEEEecCCCC
Confidence 88999999888654
No 231
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.16 E-value=2.7e+02 Score=27.35 Aligned_cols=106 Identities=17% Similarity=0.215 Sum_probs=57.4
Q ss_pred CCEEEEEcCccccCCCCcceEEEEeCCCCceeecc----CCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCC
Q psy2979 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA----PMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAE 320 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~----~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~ 320 (400)
+..|+.+.-....++...-+...|+...++-+.++ |++.+. ..++.......+++|-. ..++..||..+
T Consensus 218 ~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v-~~ca~sp~E~kLvlGC~------DgSiiLyD~~~ 290 (545)
T PF11768_consen 218 PYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQV-ICCARSPSEDKLVLGCE------DGSIILYDTTR 290 (545)
T ss_pred CcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcc-eEEecCcccceEEEEec------CCeEEEEEcCC
Confidence 34566664432112222344566777777666554 333221 12222335677788866 46899999877
Q ss_pred CeEE--EccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 321 NTWE--YKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 321 ~~W~--~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
+.=. +.+-.| ..+.. +|.++++|+. ...+.+||..-+
T Consensus 291 ~~t~~~ka~~~P------~~iaWHp~gai~~V~s~------qGelQ~FD~ALs 331 (545)
T PF11768_consen 291 GVTLLAKAEFIP------TLIAWHPDGAIFVVGSE------QGELQCFDMALS 331 (545)
T ss_pred Ceeeeeeecccc------eEEEEcCCCcEEEEEcC------CceEEEEEeecC
Confidence 7432 222222 33333 7778888876 346677776544
No 232
>KOG0308|consensus
Probab=40.19 E-value=4e+02 Score=26.76 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=40.6
Q ss_pred eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--------CCC-CCceeeeEEEE--CCeEEEEcCcCCCCCCCCe
Q psy2979 244 HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--------PML-IPRSGAAICAL--DSCIYVLGGWHASTENTNR 312 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--------~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 312 (400)
-++.+++.||. +. .+..||..+..=+.+. +++ .++..--+.+. .+.+++.||. .+.
T Consensus 128 k~~~lvaSgGL---D~----~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt------ek~ 194 (735)
T KOG0308|consen 128 KNNELVASGGL---DR----KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT------EKD 194 (735)
T ss_pred cCceeEEecCC---Cc----cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc------ccc
Confidence 37889999998 65 5777776654322221 333 23332222223 3468888887 678
Q ss_pred EEEEECCCCe
Q psy2979 313 VECYHIAENT 322 (400)
Q Consensus 313 v~~yd~~~~~ 322 (400)
+..|||.+++
T Consensus 195 lr~wDprt~~ 204 (735)
T KOG0308|consen 195 LRLWDPRTCK 204 (735)
T ss_pred eEEecccccc
Confidence 8899998875
No 233
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=39.89 E-value=3.4e+02 Score=25.93 Aligned_cols=107 Identities=13% Similarity=0.013 Sum_probs=60.3
Q ss_pred CCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 213 LDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 213 ~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
..+++.+|..+++-..+...+..-...+..--+.+|+..... .| ...+++||+...+=+++..-..... +-...
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr---~G--~p~I~~~~~~g~~~~riT~~~~~~~-~p~~S 334 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDR---GG--RPQIYLYDLEGSQVTRLTFSGGGNS-NPVWS 334 (425)
T ss_pred CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCC---CC--CcceEEECCCCCceeEeeccCCCCc-CccCC
Confidence 467899999988743343333222233333345556555333 33 4589999998887766643222211 33333
Q ss_pred ECCeEEEEcCcCCCCCCCCeEEEEECCCCe-EEEccC
Q psy2979 293 LDSCIYVLGGWHASTENTNRVECYHIAENT-WEYKSP 328 (400)
Q Consensus 293 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~ 328 (400)
-+|+.+++-+.... ...+..+|+.++. |..+..
T Consensus 335 pdG~~i~~~~~~~g---~~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 335 PDGDKIVFESSSGG---QWDIDKNDLASGGKIRILTS 368 (425)
T ss_pred CCCCEEEEEeccCC---ceeeEEeccCCCCcEEEccc
Confidence 45555555443211 2578899998777 877653
No 234
>PRK01029 tolB translocation protein TolB; Provisional
Probab=39.73 E-value=3.4e+02 Score=25.88 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=38.3
Q ss_pred CCeEEEEECCCCeEEEccCCcCccCcceEEEECCE-EEEEcCccCCCCCCCeEEEEECCCCcEEEecC
Q psy2979 310 TNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGK-IYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 310 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 376 (400)
...++.||+.+++.+.+...+.....+. ..-+|+ |+..... . ....++.+|+.+++.+.+..
T Consensus 350 ~~~I~v~dl~~g~~~~Lt~~~~~~~~p~-wSpDG~~L~f~~~~-~---g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 350 VRQICVYDLATGRDYQLTTSPENKESPS-WAIDSLHLVYSAGN-S---NESELYLISLITKKTRKIVI 412 (428)
T ss_pred CcEEEEEECCCCCeEEccCCCCCccceE-ECCCCCEEEEEECC-C---CCceEEEEECCCCCEEEeec
Confidence 3579999999999888764332111111 122554 5444332 2 23689999999988887753
No 235
>KOG0265|consensus
Probab=39.09 E-value=2.9e+02 Score=24.83 Aligned_cols=58 Identities=21% Similarity=0.383 Sum_probs=33.2
Q ss_pred CCEEEEEcccCCCCCCCeEEE---EeCCCCceEEccCCCCcccccEEEEe-------CCEEEEEcCccccCCCCcceEEE
Q psy2979 198 DGFVYAVGGWDGSCRLDSVER---YDPTKNEWSYIEPMKLAVTSPAVVAH-------EGMLYVTGGAILEDGDGIEQVQR 267 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~---yd~~~~~W~~~~~l~~~~~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~v~~ 267 (400)
+|..++.||.+. .+.. |.-..|.|..- +|..|+. ++.|+-. |. | +.+..
T Consensus 58 ~gs~~aSgG~Dr-----~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~-gt---D----k~v~~ 116 (338)
T KOG0265|consen 58 DGSCFASGGSDR-----AIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSC-GT---D----KTVRG 116 (338)
T ss_pred CCCeEeecCCcc-----eEEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEe-cC---C----ceEEE
Confidence 566777788663 2333 44556666432 4544443 3445544 43 2 47888
Q ss_pred EeCCCCcee
Q psy2979 268 YNPKVNQWQ 276 (400)
Q Consensus 268 yd~~~~~W~ 276 (400)
||.++.+-.
T Consensus 117 wD~~tG~~~ 125 (338)
T KOG0265|consen 117 WDAETGKRI 125 (338)
T ss_pred Eecccceee
Confidence 998887644
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=38.48 E-value=2.3e+02 Score=23.50 Aligned_cols=92 Identities=10% Similarity=0.037 Sum_probs=46.6
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceee
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD 277 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 277 (400)
++++.++-|... ..+..||.... .+..++....+.-.-.-+|+..++||. +.. ...+..||.. ++..
T Consensus 71 g~~favi~g~~~----~~v~lyd~~~~---~i~~~~~~~~n~i~wsP~G~~l~~~g~---~n~-~G~l~~wd~~--~~~~ 137 (194)
T PF08662_consen 71 GNEFAVIYGSMP----AKVTLYDVKGK---KIFSFGTQPRNTISWSPDGRFLVLAGF---GNL-NGDLEFWDVR--KKKK 137 (194)
T ss_pred CCEEEEEEccCC----cccEEEcCccc---EeEeecCCCceEEEECCCCCEEEEEEc---cCC-CcEEEEEECC--CCEE
Confidence 456666655221 36888998633 333333322222222347888888886 321 2368889986 4455
Q ss_pred ccCCCCCceeeeEEEECCeEEEEcC
Q psy2979 278 LAPMLIPRSGAAICALDSCIYVLGG 302 (400)
Q Consensus 278 ~~~~~~~r~~~~~~~~~~~iyv~GG 302 (400)
+.....+......-.-+|+.++...
T Consensus 138 i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 138 ISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred eeccccCcEEEEEEcCCCCEEEEEE
Confidence 5444333222222222555555543
No 237
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=38.29 E-value=2.1e+02 Score=22.92 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=48.8
Q ss_pred EEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccC----cceEEEE-CCEEEEEcCccCCCCCCCeEEEEE
Q psy2979 291 CALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRY----RPGIAVI-DGKIYVLGGEEGWDGYHDSIECYD 365 (400)
Q Consensus 291 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~----~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd 365 (400)
+.++|.+|=++....... ...+..||..+.+.....++|.... .....++ +++|-++--. .....-+||+-+
T Consensus 2 V~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~--~~~~~~~IWvm~ 78 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQC--DETSKIEIWVMK 78 (164)
T ss_pred EEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEec--cCCccEEEEEEe
Confidence 456888887765443332 2269999999999933334443322 2233233 6788777422 122236788766
Q ss_pred ---CCCCcEEEecC
Q psy2979 366 ---VDNDSWEIMSH 376 (400)
Q Consensus 366 ---~~~~~W~~~~~ 376 (400)
....+|+++-.
T Consensus 79 ~~~~~~~SWtK~~~ 92 (164)
T PF07734_consen 79 KYGYGKESWTKLFT 92 (164)
T ss_pred eeccCcceEEEEEE
Confidence 23678998843
No 238
>KOG0646|consensus
Probab=37.86 E-value=3.7e+02 Score=25.67 Aligned_cols=56 Identities=27% Similarity=0.347 Sum_probs=31.4
Q ss_pred eeEEEECCeEEEEE--eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE----CCEEEEEcccCCC
Q psy2979 150 HGLVVSGRNTIYCL--DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML----DGFVYAVGGWDGS 210 (400)
Q Consensus 150 ~~~~~~~~~~iyv~--~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~ 210 (400)
++++..+.. -|++ ....++++....++.--.. ..+++.+++.+ |+..++.||.++.
T Consensus 85 ~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v----~~aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 85 HALASSNLG-YFLLAGTISGNLYLWELSSGILLNV----LSAHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred eeeecCCCc-eEEEeecccCcEEEEEeccccHHHH----HHhhccceeEEEEeCCCcEEEecCCCcc
Confidence 455555555 5555 3566777766666542111 12344444443 7788888887754
No 239
>PRK02888 nitrous-oxide reductase; Validated
Probab=37.45 E-value=4.5e+02 Score=26.56 Aligned_cols=53 Identities=9% Similarity=0.027 Sum_probs=39.1
Q ss_pred CeEEEEECCC---CeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 311 NRVECYHIAE---NTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 311 ~~v~~yd~~~---~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
+.|-..|..+ ..+..+...|.++.-|++.+- +.++|+.|+. .+.|-++|.++.
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVankl------S~tVSVIDv~k~ 353 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKL------SPTVTVIDVRKL 353 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCC------CCcEEEEEChhh
Confidence 4788888876 235666778889988988766 4557777776 467888888763
No 240
>KOG0318|consensus
Probab=36.99 E-value=4.1e+02 Score=25.95 Aligned_cols=184 Identities=17% Similarity=0.233 Sum_probs=93.5
Q ss_pred eEEEEC-CeEEEEEeecCEEEEEECCCCCeEEcc--CCC-CcceeeeEEEECC-EEEEEcccCCCCCCCeEEEEeCCCCc
Q psy2979 151 GLVVSG-RNTIYCLDIVDIVYVAASMHKILHSLG--SLK-FDFDVSGIAMLDG-FVYAVGGWDGSCRLDSVERYDPTKNE 225 (400)
Q Consensus 151 ~~~~~~-~~~iyv~~~~~~~~~yd~~~~~w~~~~--~~~-~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~ 225 (400)
+++..+ +. ++.+..-+.+...+...+....-. ++. +|+ ++++..+ .+.++.- ...+..+.-.+.
T Consensus 368 ~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~---~lav~~d~~~avv~~------~~~iv~l~~~~~- 436 (603)
T KOG0318|consen 368 GMAASESGE-LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK---GLAVLSDGGTAVVAC------ISDIVLLQDQTK- 436 (603)
T ss_pred EEeecCCCc-EEEEecCCeEEEEecccCcccccceeecCCCce---eEEEcCCCCEEEEEe------cCcEEEEecCCc-
Confidence 444455 55 777766666666666555444332 121 233 3444433 2222211 122333332222
Q ss_pred eEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcC
Q psy2979 226 WSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGG 302 (400)
Q Consensus 226 W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG 302 (400)
+...|......++++ .++.-.++||. |+ .++.|....+.-.+.+-+...|...+.+.+ ++..++.|.
T Consensus 437 ---~~~~~~~y~~s~vAv~~~~~~vaVGG~---Dg----kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D 506 (603)
T KOG0318|consen 437 ---VSSIPIGYESSAVAVSPDGSEVAVGGQ---DG----KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD 506 (603)
T ss_pred ---ceeeccccccceEEEcCCCCEEEEecc---cc----eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec
Confidence 112232222223333 47788899998 76 588998877665544444444554555555 556666665
Q ss_pred cCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 303 WHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 303 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
. ..++..||..++.= ....+......-.+.+- ++++...|.. + ..|.+|+.+.
T Consensus 507 a------~rkvv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSl-D-----t~Viiysv~k 561 (603)
T KOG0318|consen 507 A------SRKVVLYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSL-D-----TNVIIYSVKK 561 (603)
T ss_pred c------CCcEEEEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEeccc-c-----ceEEEEEccC
Confidence 4 56788888876642 11111110011111222 7788888877 2 4688887654
No 241
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=36.77 E-value=43 Score=23.90 Aligned_cols=38 Identities=13% Similarity=-0.037 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCCcEEEec-CCCCCCCceeeEEEcccccccc
Q psy2979 357 YHDSIECYDVDNDSWEIMS-HLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 357 ~~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
....++.|||.+++.+.+. .+. +.-|+++-.++.++++
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~---fpNGVals~d~~~vlv 73 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLY---FPNGVALSPDESFVLV 73 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEES---SEEEEEE-TTSSEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCC---ccCeEEEcCCCCEEEE
Confidence 3457999999999998773 333 3356666666665554
No 242
>KOG4649|consensus
Probab=35.86 E-value=3.1e+02 Score=24.22 Aligned_cols=143 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred CCCCcccccEEEEeC--CEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCCCceeeeEEEECCeEEEEcCcCCC
Q psy2979 231 PMKLAVTSPAVVAHE--GMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIPRSGAAICALDSCIYVLGGWHAS 306 (400)
Q Consensus 231 ~l~~~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~ 306 (400)
+|..-....-+++++ ....++|.. ...+.+.|+.+.. |+.+ ...|....+.++++. .++|-+
T Consensus 6 d~~kCVDaspLVV~~dskT~v~igSH-------s~~~~avd~~sG~~~We~i---lg~RiE~sa~vvgdf-VV~GCy--- 71 (354)
T KOG4649|consen 6 DLRKCVDASPLVVCNDSKTLVVIGSH-------SGIVIAVDPQSGNLIWEAI---LGVRIECSAIVVGDF-VVLGCY--- 71 (354)
T ss_pred cchhhccCCcEEEecCCceEEEEecC-------CceEEEecCCCCcEEeehh---hCceeeeeeEEECCE-EEEEEc---
Q ss_pred CCCCCeEEEEECCCC-eEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCcee
Q psy2979 307 TENTNRVECYHIAEN-TWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLG 385 (400)
Q Consensus 307 ~~~~~~v~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~ 385 (400)
...++..+..++ +.-....+......+.+..-++-||+-.-. ...+..|+.+..---....+-.-+...
T Consensus 72 ---~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd-------~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 72 ---SGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHD-------GNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred ---cCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCC-------CcEEEecccccceEEecccCCceeccc
Q ss_pred eEEEcccccccc
Q psy2979 386 CVPLQIHKSQFV 397 (400)
Q Consensus 386 ~~~~~~~~~~~~ 397 (400)
+...++....+.
T Consensus 142 ~i~~g~~sly~a 153 (354)
T KOG4649|consen 142 VIAPGDGSLYAA 153 (354)
T ss_pred eecCCCceEEEE
No 243
>KOG0639|consensus
Probab=34.50 E-value=1.8e+02 Score=28.15 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=53.9
Q ss_pred eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCC-CceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 244 HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI-PRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
-|++-.++||. ..++-++|..+-+=+.-..++. ....++++.- +.++-...-. ...+.+||..++
T Consensus 475 pdgrtLivGGe-------astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs------dGnI~vwDLhnq 541 (705)
T KOG0639|consen 475 PDGRTLIVGGE-------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS------DGNIAVWDLHNQ 541 (705)
T ss_pred CCCceEEeccc-------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc------CCcEEEEEcccc
Confidence 37788889998 5678888887666554444443 2233333333 4454433322 335778887665
Q ss_pred eEEEccCCcCccCcceEEEE--CCEEEEEcCc
Q psy2979 322 TWEYKSPMKEKRYRPGIAVI--DGKIYVLGGE 351 (400)
Q Consensus 322 ~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~ 351 (400)
. .+..++-...+.++..+ +|.=.=.||.
T Consensus 542 ~--~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 542 T--LVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred e--eeecccCCCCCceeEEecCCCceeecCCC
Confidence 4 34445555566667666 3554456776
No 244
>KOG0308|consensus
Probab=32.95 E-value=5.2e+02 Score=26.00 Aligned_cols=93 Identities=14% Similarity=0.189 Sum_probs=49.5
Q ss_pred eEEEEeCCCCc-eeeccCCCCCceeeeEE---EECCeEEEEcCcCCCCCCCCeEEEEECCCCeE------EEcc--CCc-
Q psy2979 264 QVQRYNPKVNQ-WQDLAPMLIPRSGAAIC---ALDSCIYVLGGWHASTENTNRVECYHIAENTW------EYKS--PMK- 330 (400)
Q Consensus 264 ~v~~yd~~~~~-W~~~~~~~~~r~~~~~~---~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W------~~~~--~~~- 330 (400)
+|-.+++..+. |.. ..+..-+-+-.+. +-++.+++.||. -..+..||..+..= ..++ +++
T Consensus 96 TVK~W~~~~~~~~c~-stir~H~DYVkcla~~ak~~~lvaSgGL------D~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFCM-STIRTHKDYVKCLAYIAKNNELVASGGL------DRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred eEEEeecccCcchhH-hhhhcccchheeeeecccCceeEEecCC------CccEEEEEccCcchhhhhhccccccccCCC
Confidence 56667765554 321 1222222222222 348889999998 45677777765522 1111 233
Q ss_pred CccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 331 EKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 331 ~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
.++..--..+. .+.+++-||. .+.+..|||.+.
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgt------ek~lr~wDprt~ 203 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGT------EKDLRLWDPRTC 203 (735)
T ss_pred CCccceeeeecCCcceEEEecCc------ccceEEeccccc
Confidence 22222112233 3458888876 467888999886
No 245
>KOG0282|consensus
Probab=32.95 E-value=2e+02 Score=27.51 Aligned_cols=76 Identities=9% Similarity=0.258 Sum_probs=43.5
Q ss_pred CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCC--
Q psy2979 294 DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDN-- 368 (400)
Q Consensus 294 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~-- 368 (400)
.+.=|+.+|+ ...+-.+|.+|++-..--.... ...++-+ +.+++++||. + ..|..||+.+
T Consensus 269 ~g~~fLS~sf------D~~lKlwDtETG~~~~~f~~~~---~~~cvkf~pd~~n~fl~G~s-d-----~ki~~wDiRs~k 333 (503)
T KOG0282|consen 269 CGTSFLSASF------DRFLKLWDTETGQVLSRFHLDK---VPTCVKFHPDNQNIFLVGGS-D-----KKIRQWDIRSGK 333 (503)
T ss_pred cCCeeeeeec------ceeeeeeccccceEEEEEecCC---CceeeecCCCCCcEEEEecC-C-----CcEEEEeccchH
Confidence 4566677776 4467778999988654322111 1122222 3489999998 3 3455566555
Q ss_pred ---------CcEEEecCCCCCCCce
Q psy2979 369 ---------DSWEIMSHLPSARSWL 384 (400)
Q Consensus 369 ---------~~W~~~~~~~~~r~~~ 384 (400)
+.|..+.-++.+|...
T Consensus 334 vvqeYd~hLg~i~~i~F~~~g~rFi 358 (503)
T KOG0282|consen 334 VVQEYDRHLGAILDITFVDEGRRFI 358 (503)
T ss_pred HHHHHHhhhhheeeeEEccCCceEe
Confidence 3555555555555443
No 246
>KOG0294|consensus
Probab=32.51 E-value=3.8e+02 Score=24.29 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=17.3
Q ss_pred EEEECCEEEEEcccCCCCCCCeEEEEeCCCCc
Q psy2979 194 IAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE 225 (400)
Q Consensus 194 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 225 (400)
++.+++.-.+.||.+ .++.+||..++.
T Consensus 48 avAVs~~~~aSGssD-----etI~IYDm~k~~ 74 (362)
T KOG0294|consen 48 ALAVSGPYVASGSSD-----ETIHIYDMRKRK 74 (362)
T ss_pred EEEecceeEeccCCC-----CcEEEEeccchh
Confidence 444566555555544 468999988764
No 247
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=32.02 E-value=29 Score=26.30 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=36.2
Q ss_pred ChhHHHHHHHHHhcCce--------eceEEEE--CCeEEehhhHHHhhcCccccccceeecCCCCHHHHHHHhh
Q psy2979 1 MKMVLTGFNEARKNNEF--------CDVTLCV--DGSKFPAHRVVLAASSPYFKVLETIRLPQLSPYFLHDCVE 64 (400)
Q Consensus 1 ~~~~l~~l~~~r~~~~~--------~Dv~l~~--~~~~~~~hr~vLaa~s~yf~~m~~vrl~~l~~~~l~~~i~ 64 (400)
++.|++.|.++|++|.+ +.|++.- +++.+..|..|+|... =+.++.+.|.+.|.
T Consensus 30 Ah~L~~~l~~~R~~~~~~~l~PD~KsQVtveY~~~~~P~ri~tivvS~QH----------~~~i~~~~ir~~i~ 93 (120)
T PF02772_consen 30 AHRLARRLAEVRKNGELPWLRPDGKSQVTVEYDENGKPVRIDTIVVSTQH----------DEDISLEEIREDIK 93 (120)
T ss_dssp HHHHHHHHHHHHHTSSSTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE-----------TTS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCcccCCCcceeEEEeeccCCceeeeeEEEEEecC----------CCCCCHHHHHHHHH
Confidence 36789999999999987 4667776 4667777777665432 24555666666554
No 248
>KOG1517|consensus
Probab=32.02 E-value=6.9e+02 Score=27.10 Aligned_cols=58 Identities=22% Similarity=0.355 Sum_probs=34.0
Q ss_pred EEEccCCcCccCcceEEEE----CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEc
Q psy2979 323 WEYKSPMKEKRYRPGIAVI----DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 390 (400)
Q Consensus 323 W~~~~~~~~~~~~~~~~~~----~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 390 (400)
|+.+..+-..-.+.++++- .|++++.|+. ..|-++|..+.+ .+.++|.. ...+++.+.
T Consensus 1154 w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~-------r~IRIWDa~~E~--~~~diP~~-s~t~vTaLS 1215 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV-------RSIRIWDAHKEQ--VVADIPYG-SSTLVTALS 1215 (1387)
T ss_pred eccccccCccCCCCCeeeehhhhCCeEEecCCe-------eEEEEEecccce--eEeecccC-CCccceeec
Confidence 6666654433334444432 6889998875 578888877653 44455544 444444443
No 249
>KOG4378|consensus
Probab=31.80 E-value=4.9e+02 Score=25.30 Aligned_cols=96 Identities=13% Similarity=0.217 Sum_probs=55.2
Q ss_pred EEEEEcCccccCCCCcceEEEEeCCCCc----eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 247 MLYVTGGAILEDGDGIEQVQRYNPKVNQ----WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 247 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~----W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
.+..+.|. +| .|..||..... |.+...-| -.+.+....+..|++.=|+ ..++..||...++
T Consensus 178 ~lL~~asd---~G----~VtlwDv~g~sp~~~~~~~HsAP--~~gicfspsne~l~vsVG~------Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 178 FLLSIASD---KG----AVTLWDVQGMSPIFHASEAHSAP--CRGICFSPSNEALLVSVGY------DKKINIYDIRSQA 242 (673)
T ss_pred eeeEeecc---CC----eEEEEeccCCCcccchhhhccCC--cCcceecCCccceEEEecc------cceEEEeeccccc
Confidence 45555555 33 57777775443 55554333 3344555568888888887 6789999987654
Q ss_pred EEEc--cCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 323 WEYK--SPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 323 W~~~--~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
-... ...| .+.+++ +|.++++|-. ...++.||...
T Consensus 243 s~~~l~y~~P-----lstvaf~~~G~~L~aG~s------~G~~i~YD~R~ 281 (673)
T KOG4378|consen 243 STDRLTYSHP-----LSTVAFSECGTYLCAGNS------KGELIAYDMRS 281 (673)
T ss_pred ccceeeecCC-----cceeeecCCceEEEeecC------CceEEEEeccc
Confidence 3221 1112 123333 5666666643 34678888754
No 250
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=31.67 E-value=1.9e+02 Score=25.62 Aligned_cols=57 Identities=25% Similarity=0.449 Sum_probs=37.6
Q ss_pred ECCEEEEEcccCCC-C-CCCeEEEEeCC-CCceEEccCC-CCcccccEEEEeCCEEEEEcCc
Q psy2979 197 LDGFVYAVGGWDGS-C-RLDSVERYDPT-KNEWSYIEPM-KLAVTSPAVVAHEGMLYVTGGA 254 (400)
Q Consensus 197 ~~~~iyv~GG~~~~-~-~~~~v~~yd~~-~~~W~~~~~l-~~~~~~~~~~~~~~~iyv~GG~ 254 (400)
.+++.++.|-.... . ..+.|..|.-. .++|+.++.. ......+-.+-+++.+ ++||.
T Consensus 35 ~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~~~~~~LqDPF~t~I~gel-ifGGv 95 (298)
T PF08950_consen 35 YNGKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEGAPVFQLQDPFVTRIQGEL-IFGGV 95 (298)
T ss_dssp ETTEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT---BS-EEEEEEEETTEE-EEEEE
T ss_pred ECCEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCCcceEEecCcceeeECCEE-EEeeE
Confidence 47888888776533 2 35667777666 8899999874 4667788888999997 56886
No 251
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=30.37 E-value=4.9e+02 Score=24.90 Aligned_cols=129 Identities=13% Similarity=0.198 Sum_probs=67.2
Q ss_pred EEeCCEEEEEcCccc---cCC---CC-cceEEEEeCCCCcee-----eccCCCCCceeeeEEEECCeEEEEcCc----CC
Q psy2979 242 VAHEGMLYVTGGAIL---EDG---DG-IEQVQRYNPKVNQWQ-----DLAPMLIPRSGAAICALDSCIYVLGGW----HA 305 (400)
Q Consensus 242 ~~~~~~iyv~GG~~~---~~~---~~-~~~v~~yd~~~~~W~-----~~~~~~~~r~~~~~~~~~~~iyv~GG~----~~ 305 (400)
..-+|.||++.+... .++ .. ...+.|.+-.+.... .+...........+..+++.-+++=-. ..
T Consensus 282 ~~enGDvYvfS~s~a~~~~~~~~~stkPSGilRIk~G~teFD~~Yffnle~~sgg~~~~~~~yIG~~kFll~~~~~~~~~ 361 (435)
T PF14298_consen 282 KDENGDVYVFSPSYAKTMSDGKSQSTKPSGILRIKKGTTEFDKSYFFNLEAKSGGYKFFRVWYIGNNKFLLQMYDKALTG 361 (435)
T ss_pred EeCCCCEEEEcCcccccccccccccCCccEEEEECCCCcccCcceEeeeecccCCcceEEEEEecCCEEEEEEecccccc
Confidence 345788999865411 010 11 445666544333222 222333333334444443322222111 11
Q ss_pred CCCCCCeEEEEECCCCeEEEccCCcCc---cCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEE
Q psy2979 306 STENTNRVECYHIAENTWEYKSPMKEK---RYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 306 ~~~~~~~v~~yd~~~~~W~~~~~~~~~---~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 372 (400)
......++.+||..+++.+.+..+|.. ...-...+-+|++|+---. . .....-||.+||.+.+-+
T Consensus 362 ~~~~~~~laI~d~~~kt~t~V~glP~~~is~~~~~~~ve~G~aYi~Vtt-~-~g~~~~IY~iDp~TatAt 429 (435)
T PF14298_consen 362 TYSDAKKLAIFDVSNKTFTWVTGLPADLISGFGNAPYVENGKAYIPVTT-E-DGSDPYIYKIDPATATAT 429 (435)
T ss_pred cCCccceEEEEEccCceeEEeccCChhhccccccceEeeCCEEEEEEee-c-CCCceeEEEEcCcccccc
Confidence 111156788999999988887777755 2222334458888885432 1 111357999999987643
No 252
>KOG1240|consensus
Probab=28.86 E-value=8.2e+02 Score=26.99 Aligned_cols=195 Identities=12% Similarity=0.171 Sum_probs=0.0
Q ss_pred ceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEc-----cCCCCcccccEEEEeCCE-EEEEcCccccCCCCc
Q psy2979 189 FDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI-----EPMKLAVTSPAVVAHEGM-LYVTGGAILEDGDGI 262 (400)
Q Consensus 189 r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-----~~l~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~ 262 (400)
|.......-++.-|++|+.+|.-..-.+..|+-..-.-+.. ..-+.....++.+...+. +.+.+-. .
T Consensus 1100 r~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~-------~ 1172 (1431)
T KOG1240|consen 1100 RVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATD-------L 1172 (1431)
T ss_pred ceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEe-------c
Q ss_pred ceEEEEeCCCCc--eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCC----eEEEccCCcCccCcc
Q psy2979 263 EQVQRYNPKVNQ--WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAEN----TWEYKSPMKEKRYRP 336 (400)
Q Consensus 263 ~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~~~~~ 336 (400)
..+..+|+.... |+.-.++..+.....++.-.+..+++|-. ...+.+||..-+ .|+.-...|..+...
T Consensus 1173 ~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts------~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1173 SRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTS------RGQLVLWDLRFRVPILSWEHPARAPIRHVWL 1246 (1431)
T ss_pred cceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecC------CceEEEEEeecCceeecccCcccCCcceEEe
Q ss_pred eEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc-----EEE---------ecCC----CCCCCceeeEEEccccccccc
Q psy2979 337 GIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS-----WEI---------MSHL----PSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 337 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-----W~~---------~~~~----~~~r~~~~~~~~~~~~~~~~~ 398 (400)
..+.-.+..-|.+|. ...+.+..|+.+++. |.. ++.- |....+-.+++.+++..++.|
T Consensus 1247 ~~~~~~~S~~vs~~~----~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltg 1322 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGS----SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTG 1322 (1431)
T ss_pred eccCCCCceEEEecc----cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeec
Q ss_pred CC
Q psy2979 399 KS 400 (400)
Q Consensus 399 ~~ 400 (400)
|+
T Consensus 1323 gs 1324 (1431)
T KOG1240|consen 1323 GS 1324 (1431)
T ss_pred CC
No 253
>KOG0640|consensus
Probab=28.70 E-value=4.5e+02 Score=23.85 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=37.1
Q ss_pred CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeE--EEE--CCeEEEEcCcCCCCCCCCeEEEEECCC
Q psy2979 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAI--CAL--DSCIYVLGGWHASTENTNRVECYHIAE 320 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~--~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~ 320 (400)
.|...++|-. ...+..||..|-+-.--+. |......++ +.+ .++||+.|-. ...+-.+|-..
T Consensus 227 sGefllvgTd-------Hp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSk------DG~IklwDGVS 292 (430)
T KOG0640|consen 227 SGEFLLVGTD-------HPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASK------DGAIKLWDGVS 292 (430)
T ss_pred CCceEEEecC-------CCceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEecc------CCcEEeecccc
Confidence 4455555544 4578889987776543333 332222222 222 6799999866 34566677666
Q ss_pred CeE
Q psy2979 321 NTW 323 (400)
Q Consensus 321 ~~W 323 (400)
++.
T Consensus 293 ~rC 295 (430)
T KOG0640|consen 293 NRC 295 (430)
T ss_pred HHH
Confidence 554
No 254
>PF05666 Fels1: Fels-1 Prophage Protein-like; InterPro: IPR008617 The function of these proteins is unknown.
Probab=28.62 E-value=29 Score=21.08 Aligned_cols=17 Identities=41% Similarity=0.855 Sum_probs=13.2
Q ss_pred hcCceeceE--EEECCeEE
Q psy2979 13 KNNEFCDVT--LCVDGSKF 29 (400)
Q Consensus 13 ~~~~~~Dv~--l~~~~~~~ 29 (400)
.+|.|||+. ++++..-+
T Consensus 15 ~~GV~CD~~~~~C~ds~gv 33 (45)
T PF05666_consen 15 ANGVFCDKKERLCADSGGV 33 (45)
T ss_pred CCCceEccccceeecCCCC
Confidence 579999999 99884433
No 255
>KOG0318|consensus
Probab=28.12 E-value=5.8e+02 Score=24.98 Aligned_cols=64 Identities=20% Similarity=0.330 Sum_probs=41.2
Q ss_pred CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 294 DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 294 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
++.-.++||. ...+..|....+.-...+.+...|...+.+.+ ++..+..|-. ...+..||.+++
T Consensus 454 ~~~~vaVGG~------Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da------~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 454 DGSEVAVGGQ------DGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA------SRKVVLYDVASR 519 (603)
T ss_pred CCCEEEEecc------cceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc------CCcEEEEEcccC
Confidence 6778888987 44688888877654444444445555566666 5666666544 456778887664
No 256
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=27.67 E-value=1.7e+02 Score=26.50 Aligned_cols=97 Identities=10% Similarity=0.099 Sum_probs=57.9
Q ss_pred ceEEEEeCCCCceeec-cCCC-CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEE
Q psy2979 263 EQVQRYNPKVNQWQDL-APML-IPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAV 340 (400)
Q Consensus 263 ~~v~~yd~~~~~W~~~-~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 340 (400)
+.-...|..+++--.- -.|| .|| -++|++|+.--. ...+..+|+++++.+.+...|.-..+ ..-
T Consensus 185 ~gG~vidv~s~evl~~GLsmPhSPR------WhdgrLwvldsg------tGev~~vD~~~G~~e~Va~vpG~~rG--L~f 250 (335)
T TIGR03032 185 DGGCVIDIPSGEVVASGLSMPHSPR------WYQGKLWLLNSG------RGELGYVDPQAGKFQPVAFLPGFTRG--LAF 250 (335)
T ss_pred CCeEEEEeCCCCEEEcCccCCcCCc------EeCCeEEEEECC------CCEEEEEcCCCCcEEEEEECCCCCcc--cce
Confidence 3344466666642211 1444 233 357999998754 67899999999999999877743332 222
Q ss_pred ECCEEEEEcCccCC--------------CCCCCeEEEEECCCCc---EEEe
Q psy2979 341 IDGKIYVLGGEEGW--------------DGYHDSIECYDVDNDS---WEIM 374 (400)
Q Consensus 341 ~~~~lyv~GG~~~~--------------~~~~~~v~~yd~~~~~---W~~~ 374 (400)
+ |.+.++|-.... ......+++.|..++. |-.+
T Consensus 251 ~-G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~f 300 (335)
T TIGR03032 251 A-GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRF 300 (335)
T ss_pred e-CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEe
Confidence 3 555555543110 1123568888988875 5544
No 257
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=27.23 E-value=1.1e+02 Score=16.33 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=15.4
Q ss_pred ECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 341 IDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 341 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.++.+|+.... ..++.+|.++++
T Consensus 5 ~~~~v~~~~~~-------g~l~a~d~~~G~ 27 (33)
T smart00564 5 SDGTVYVGSTD-------GTLYALDAKTGE 27 (33)
T ss_pred ECCEEEEEcCC-------CEEEEEEcccCc
Confidence 45677765432 578999987764
No 258
>KOG1897|consensus
Probab=26.07 E-value=8.4e+02 Score=26.15 Aligned_cols=166 Identities=11% Similarity=0.069 Sum_probs=95.5
Q ss_pred CCeEEEEeCCCCceEEccCCCCcccccEEEEe------C-CEEEEEcCcc-ccCCCC--cceEEEEeCC-CCceeeccCC
Q psy2979 213 LDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH------E-GMLYVTGGAI-LEDGDG--IEQVQRYNPK-VNQWQDLAPM 281 (400)
Q Consensus 213 ~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~------~-~~iyv~GG~~-~~~~~~--~~~v~~yd~~-~~~W~~~~~~ 281 (400)
...+..||.. +.+.+...+..+.-.+...+ + +..|++|-.. .++... ...+..|... .++-+.++.+
T Consensus 749 ~s~l~vlD~n--Tf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~ 826 (1096)
T KOG1897|consen 749 VSFLRVLDQN--TFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET 826 (1096)
T ss_pred EEEEEEecCC--ceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee
Confidence 4445667755 45555554444433332222 2 5677776432 234332 3344444433 4777788877
Q ss_pred CCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcce----EEEECCEEEEEcCccCCCCC
Q psy2979 282 LIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPG----IAVIDGKIYVLGGEEGWDGY 357 (400)
Q Consensus 282 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~----~~~~~~~lyv~GG~~~~~~~ 357 (400)
-..-.-.+++.++|++.+.=| ..+..|+..+++=-.+ ......+. .-+.++.|++.-=. .
T Consensus 827 ~v~Gav~aL~~fngkllA~In--------~~vrLye~t~~~eLr~---e~~~~~~~~aL~l~v~gdeI~VgDlm-----~ 890 (1096)
T KOG1897|consen 827 VVKGAVYALVEFNGKLLAGIN--------QSVRLYEWTTERELRI---ECNISNPIIALDLQVKGDEIAVGDLM-----R 890 (1096)
T ss_pred eeccceeehhhhCCeEEEecC--------cEEEEEEccccceehh---hhcccCCeEEEEEEecCcEEEEeecc-----c
Confidence 777777888888999766433 4677887766621111 11222333 33447777774322 2
Q ss_pred CCeEEEEECCCCcEEEecCCCCCCCceeeEEEccccccc
Q psy2979 358 HDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQF 396 (400)
Q Consensus 358 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~ 396 (400)
+-.+..|+...+...+++.--.|+.--++..+++..|+-
T Consensus 891 Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylg 929 (1096)
T KOG1897|consen 891 SITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLG 929 (1096)
T ss_pred eEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEe
Confidence 346778998888888887655566666667777766653
No 259
>KOG0643|consensus
Probab=25.88 E-value=4.7e+02 Score=23.20 Aligned_cols=100 Identities=8% Similarity=-0.044 Sum_probs=52.6
Q ss_pred eecCEEEEEECCCCCeEEccCC--CCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEcc-----CCCCcc
Q psy2979 164 DIVDIVYVAASMHKILHSLGSL--KFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE-----PMKLAV 236 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~--~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-----~l~~~~ 236 (400)
..-+++...|..+++-.-.-.. +..|..+. .++.+.++.-....+....+..||.....=+... .+|.+-
T Consensus 71 SAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~---~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ 147 (327)
T KOG0643|consen 71 SADQTAKLWDVETGKQLATWKTNSPVKRVDFS---FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD 147 (327)
T ss_pred cccceeEEEEcCCCcEEEEeecCCeeEEEeec---cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc
Confidence 3344566677777763322222 33344443 2444444433233345677888888744322221 123333
Q ss_pred cccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCC
Q psy2979 237 TSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVN 273 (400)
Q Consensus 237 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 273 (400)
.....+.. -++..|.|+. ++ ++-+||..++
T Consensus 148 skit~a~Wg~l~~~ii~Ghe---~G----~is~~da~~g 179 (327)
T KOG0643|consen 148 SKITSALWGPLGETIIAGHE---DG----SISIYDARTG 179 (327)
T ss_pred cceeeeeecccCCEEEEecC---CC----cEEEEEcccC
Confidence 44444443 3566677777 55 6889998875
No 260
>KOG0268|consensus
Probab=25.86 E-value=3.4e+02 Score=25.15 Aligned_cols=53 Identities=17% Similarity=0.353 Sum_probs=29.7
Q ss_pred CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE--ECCeEEEEcCcCCCC
Q psy2979 246 GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA--LDSCIYVLGGWHAST 307 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~ 307 (400)
|+=+|.|++ | .++-+|......-.++-- +.|.-+-.++ .-+.=||+.|.+..+
T Consensus 284 G~Efvsgsy---D----ksIRIf~~~~~~SRdiYh--tkRMq~V~~Vk~S~Dskyi~SGSdd~n 338 (433)
T KOG0268|consen 284 GQEFVSGSY---D----KSIRIFPVNHGHSRDIYH--TKRMQHVFCVKYSMDSKYIISGSDDGN 338 (433)
T ss_pred cchhccccc---c----ceEEEeecCCCcchhhhh--HhhhheeeEEEEeccccEEEecCCCcc
Confidence 667788887 4 467777765444333321 2233333332 256668888876543
No 261
>KOG0973|consensus
Probab=25.79 E-value=8.3e+02 Score=26.04 Aligned_cols=112 Identities=16% Similarity=0.158 Sum_probs=55.3
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCC---CceEE-ccCCCCcccccEE---EE---eCCEEEEEcCccccCCCCcceEEE
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTK---NEWSY-IEPMKLAVTSPAV---VA---HEGMLYVTGGAILEDGDGIEQVQR 267 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~---~~W~~-~~~l~~~~~~~~~---~~---~~~~iyv~GG~~~~~~~~~~~v~~ 267 (400)
++.-+..||...+.... +|.-++.- ..|.. ++.+......|.. ++ -||+-+.+|+. |. .-.+|.
T Consensus 24 dg~~~aTgGq~~d~~~~-iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD---D~--~v~iW~ 97 (942)
T KOG0973|consen 24 DGVKFATGGQVLDGGIV-IWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD---DR--LVMIWE 97 (942)
T ss_pred CceeEecCCccccccce-eeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC---cc--eEEEee
Confidence 56778888843222111 55443332 23444 4544433333432 22 37777777776 43 334566
Q ss_pred EeCC--------------CCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 268 YNPK--------------VNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 268 yd~~--------------~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
|++. ..+|..+.-+...-....-+.. ++.+++.+|. .++|..||..+-
T Consensus 98 ~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~------DnsViiwn~~tF 161 (942)
T KOG0973|consen 98 RAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSL------DNSVIIWNAKTF 161 (942)
T ss_pred ecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecc------cceEEEEccccc
Confidence 6631 1234444322211111111111 5778888877 568888887665
No 262
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=25.27 E-value=4.4e+02 Score=24.06 Aligned_cols=58 Identities=17% Similarity=0.195 Sum_probs=29.6
Q ss_pred CCeEEEEECCCCeEEEcc-CCcC-ccC----cc-------eEEE-ECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 310 TNRVECYHIAENTWEYKS-PMKE-KRY----RP-------GIAV-IDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 310 ~~~v~~yd~~~~~W~~~~-~~~~-~~~----~~-------~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
...+..+|+.++++..++ +.|. .+. .. .... .++++++.-.. .+.+++|| .++.-+..
T Consensus 177 ~~~~~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~~------~~~iyv~d-~~~~~~~~ 248 (333)
T PF13970_consen 177 IPVLAIIDLNTKKVKWLPLPYPDKYQKYNINWDGGMFPSYSYNYFKGGKIIISFPA------DSEIYVYD-SNDSLKKY 248 (333)
T ss_dssp SEEEEEEETTT--EEEEEEE--S------SSEEE---EEEEEET-TTTEEEEEETT-------SEEEEES-SSS-EEEE
T ss_pred ceEEEEEECCCCeEEEEeCCChHHhhhhccccCcceecceeEEEeeCCEEEEecCC------CceEEEEC-CCCeEEEE
Confidence 457889999999988665 3221 111 01 1111 25665554443 46888888 66655444
No 263
>KOG0285|consensus
Probab=25.26 E-value=5.5e+02 Score=23.80 Aligned_cols=205 Identities=16% Similarity=0.196 Sum_probs=93.1
Q ss_pred ceEEEEEcCCCceEEccCCc-ccceeeeEEEECCeEEEEE--eecCEEEEEECCCCCeEEccCCCCcceeeeEEE----E
Q psy2979 125 RSVEGFCVKTKVWKTLSCLP-FAISKHGLVVSGRNTIYCL--DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM----L 197 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~-~~~~~~~~~~~~~~~iyv~--~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~----~ 197 (400)
..+-+.|..+++-.. .++ ..-.--.+++.+.. =|+| ...+.+-|||+..|+... .-++|-.++ +
T Consensus 173 rtikIwDlatg~Lkl--tltGhi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~nkvIR------~YhGHlS~V~~L~l 243 (460)
T KOG0285|consen 173 RTIKIWDLATGQLKL--TLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEYNKVIR------HYHGHLSGVYCLDL 243 (460)
T ss_pred ceeEEEEcccCeEEE--eecchhheeeeeeecccC-ceEEEecCCCeeEEEechhhhhHH------HhccccceeEEEec
Confidence 567778888776442 222 11111233444433 4555 556778999999886431 111111111 1
Q ss_pred C--CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC---cccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCC
Q psy2979 198 D--GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL---AVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKV 272 (400)
Q Consensus 198 ~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~---~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 272 (400)
. ..+.+.||.+ +.+-++|..+..= +.-|.. +...-.+-..|.+|| .|.. |+ +|..+|...
T Consensus 244 hPTldvl~t~grD-----st~RvWDiRtr~~--V~~l~GH~~~V~~V~~~~~dpqvi-t~S~---D~----tvrlWDl~a 308 (460)
T KOG0285|consen 244 HPTLDVLVTGGRD-----STIRVWDIRTRAS--VHVLSGHTNPVASVMCQPTDPQVI-TGSH---DS----TVRLWDLRA 308 (460)
T ss_pred cccceeEEecCCc-----ceEEEeeecccce--EEEecCCCCcceeEEeecCCCceE-EecC---Cc----eEEEeeecc
Confidence 2 4566777765 4466677776532 111221 111111222356665 3333 32 566666654
Q ss_pred CceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCcc-CcceEEEECCEEEEEcC
Q psy2979 273 NQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR-YRPGIAVIDGKIYVLGG 350 (400)
Q Consensus 273 ~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~-~~~~~~~~~~~lyv~GG 350 (400)
++=-.. -....+..-+++.. +..+|..++ .+.+.+++...+.. +.++.... ..-++.+..+-+|+.||
T Consensus 309 gkt~~t-lt~hkksvral~lhP~e~~fASas-------~dnik~w~~p~g~f--~~nlsgh~~iintl~~nsD~v~~~G~ 378 (460)
T KOG0285|consen 309 GKTMIT-LTHHKKSVRALCLHPKENLFASAS-------PDNIKQWKLPEGEF--LQNLSGHNAIINTLSVNSDGVLVSGG 378 (460)
T ss_pred CceeEe-eecccceeeEEecCCchhhhhccC-------CccceeccCCccch--hhccccccceeeeeeeccCceEEEcC
Confidence 431111 01111121222222 223333333 34455555444332 12221111 11234445677888898
Q ss_pred ccCCCCCCCeEEEEECCCC
Q psy2979 351 EEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 351 ~~~~~~~~~~v~~yd~~~~ 369 (400)
. . ..++.||-+++
T Consensus 379 d-n-----g~~~fwdwksg 391 (460)
T KOG0285|consen 379 D-N-----GSIMFWDWKSG 391 (460)
T ss_pred C-c-----eEEEEEecCcC
Confidence 6 2 35677776664
No 264
>KOG0305|consensus
Probab=24.75 E-value=6.6e+02 Score=24.52 Aligned_cols=131 Identities=17% Similarity=0.178 Sum_probs=68.7
Q ss_pred ecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC-cccccEE
Q psy2979 165 IVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL-AVTSPAV 241 (400)
Q Consensus 165 ~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~-~~~~~~~ 241 (400)
....+++.+-.+..-..+.++- +...+.+.. +|...++|-.+ ..++.||..+.+ .++.|.. .....++
T Consensus 195 lg~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~-----g~v~iwD~~~~k--~~~~~~~~h~~rvg~ 265 (484)
T KOG0305|consen 195 LGQSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSD-----GTVQIWDVKEQK--KTRTLRGSHASRVGS 265 (484)
T ss_pred ecceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecC-----CeEEEEehhhcc--ccccccCCcCceeEE
Confidence 3345666666666655555443 333333333 46667776544 358999987664 2333433 2233345
Q ss_pred EEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC-CCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 242 VAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML-IPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 242 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
..-++.+...|+. ++ .+..+|....+=.. ..+. ....-++..-. ++..+..||. .+.+..||.
T Consensus 266 laW~~~~lssGsr---~~----~I~~~dvR~~~~~~-~~~~~H~qeVCgLkws~d~~~lASGgn------DN~~~Iwd~ 330 (484)
T KOG0305|consen 266 LAWNSSVLSSGSR---DG----KILNHDVRISQHVV-STLQGHRQEVCGLKWSPDGNQLASGGN------DNVVFIWDG 330 (484)
T ss_pred EeccCceEEEecC---CC----cEEEEEEecchhhh-hhhhcccceeeeeEECCCCCeeccCCC------ccceEeccC
Confidence 5568888888887 54 46666653221000 0011 11111222222 5566666776 567778876
No 265
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=24.38 E-value=3.5e+02 Score=25.82 Aligned_cols=138 Identities=9% Similarity=0.058 Sum_probs=66.9
Q ss_pred EEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc-ee-----eccC--CCCCc-eeeeEEEECCeEEEEcCcCCCCCCC
Q psy2979 240 AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ-WQ-----DLAP--MLIPR-SGAAICALDSCIYVLGGWHASTENT 310 (400)
Q Consensus 240 ~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~-W~-----~~~~--~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~ 310 (400)
++.+..+.|+++|-. +++.|.....+ -+ ..+. ++..- ..++.+.+++.++.+|......
T Consensus 187 gl~~~r~~I~~fG~~---------TiEvf~nTGasd~~~~~y~r~pg~~Iq~GcAa~~s~~~~~~t~~wlg~~~~G~--- 254 (469)
T PF11134_consen 187 GLAVWRREIWCFGAS---------TIEVFYNTGASDFTQPPYQRQPGAMIQKGCAAKHSKTKFGNTVAWLGHDATGA--- 254 (469)
T ss_pred EEEEeeeeEEEEecc---------cEEEEEccCCcccccchhhhCCcceeeccccccceeeecCCEEEEeccCCCCC---
Confidence 366778999999877 45555432221 11 1111 11111 2355566788888888753322
Q ss_pred CeEEEEECCCCeEEEccCCcCccCcceE------------EEECC-EEEEEcCccCCCCCCCeEEEEECCCCcE----EE
Q psy2979 311 NRVECYHIAENTWEYKSPMKEKRYRPGI------------AVIDG-KIYVLGGEEGWDGYHDSIECYDVDNDSW----EI 373 (400)
Q Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~------------~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W----~~ 373 (400)
..|+.- ...+=..+...+......+. ...++ .+|++-= .+.+||||..+++| -.
T Consensus 255 ~sVy~~--~gyq~~RIST~~IE~~l~~ya~~ela~af~et~~f~~h~~l~ihl-------p~~tlcyD~at~~~~~qw~~ 325 (469)
T PF11134_consen 255 PSVYRI--NGYQASRISTHAIEKALRSYAHDELAIAFMETYQFDGHEFLLIHL-------PRKTLCYDAATSQWGEQWFI 325 (469)
T ss_pred ceEEEe--cCCceeeeccHHHHHHHHhhccHHHHHHHHHHhhcCceEEEEEEc-------CCceEEEEcccCCcccceEE
Confidence 244443 34444455443321111111 11233 3444421 25789999999955 44
Q ss_pred ec-CCCCCCCceeeEEEccccccccc
Q psy2979 374 MS-HLPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 374 ~~-~~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
+. .+-..++.+......+.++.+.|
T Consensus 326 l~tg~~~~~~R~~~~~f~~~q~~VGD 351 (469)
T PF11134_consen 326 LKTGFYDEPYRAIDFMFFDNQITVGD 351 (469)
T ss_pred EeccccCCcceeeeeEEeCCeeEecc
Confidence 43 23233344444444444444433
No 266
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=24.15 E-value=6.4e+02 Score=24.11 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=39.7
Q ss_pred CcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE--eecCEEEEEECCC
Q psy2979 121 KVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL--DIVDIVYVAASMH 176 (400)
Q Consensus 121 ~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~--~~~~~~~~yd~~~ 176 (400)
....+.+..+|..-+---+++.+...-.-+++-..++. .|++ ...+-++..|...
T Consensus 402 de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv-~yiVTfrqtDPlfviDlsN 458 (603)
T COG4880 402 DEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDV-LYIVTFRQTDPLFVIDLSN 458 (603)
T ss_pred CCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCce-EEEEEEeccCceEEEEcCC
Confidence 45678889999887776777777655555677888888 8888 4555667777654
No 267
>PF12904 Collagen_bind_2: Putative collagen-binding domain of a collagenase ; InterPro: IPR024749 This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. The structure of one family member, Q8A905 from SWISSPROT, has been characterised. The domain occurs in the C-terminal region of the protein.; PDB: 3KZS_D.
Probab=23.20 E-value=1.8e+02 Score=20.97 Aligned_cols=18 Identities=6% Similarity=-0.060 Sum_probs=12.4
Q ss_pred CEEEEEECCCCCeEEccC
Q psy2979 167 DIVYVAASMHKILHSLGS 184 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~ 184 (400)
...+.|||.++++..+..
T Consensus 49 ~~a~WfdPR~G~~~~~g~ 66 (93)
T PF12904_consen 49 VKAWWFDPRTGKYTYIGE 66 (93)
T ss_dssp EEEEEEETTT-BEEEEEE
T ss_pred eeEEEEcCCCCCEEEeee
Confidence 357889999988776543
No 268
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=22.77 E-value=5.1e+02 Score=22.51 Aligned_cols=141 Identities=9% Similarity=0.021 Sum_probs=0.0
Q ss_pred EEEEECCCCCe-EEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc----------c
Q psy2979 169 VYVAASMHKIL-HSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV----------T 237 (400)
Q Consensus 169 ~~~yd~~~~~w-~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~----------~ 237 (400)
++.++...+++ .....+..|..-.+++..++.|++... +....+|+.++.=+.+.++.... .
T Consensus 118 i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~-------~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~ 190 (275)
T PF00780_consen 118 IYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTS-------KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSK 190 (275)
T ss_pred EEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeC-------CceEEEecCCCCceEEeCccCCcchhhhcccCCC
Q ss_pred ccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEE
Q psy2979 238 SPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317 (400)
Q Consensus 238 ~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 317 (400)
...+..+++.-|++.-. +-....|......+ -..+.=...-..++.....|++++ .+.++.++
T Consensus 191 ~~~~~~~~~~e~Ll~~~--------~~g~fv~~~G~~~r-~~~i~W~~~p~~~~~~~pyli~~~--------~~~iEV~~ 253 (275)
T PF00780_consen 191 PLGIFQLSDNEFLLCYD--------NIGVFVNKNGEPSR-KSTIQWSSAPQSVAYSSPYLIAFS--------SNSIEVRS 253 (275)
T ss_pred ceEEEEeCCceEEEEec--------ceEEEEcCCCCcCc-ccEEEcCCchhEEEEECCEEEEEC--------CCEEEEEE
Q ss_pred CCCCeEEEccCCcCcc
Q psy2979 318 IAENTWEYKSPMKEKR 333 (400)
Q Consensus 318 ~~~~~W~~~~~~~~~~ 333 (400)
..+++..+.-+++..|
T Consensus 254 ~~~~~lvQ~i~~~~~~ 269 (275)
T PF00780_consen 254 LETGELVQTIPLPNIR 269 (275)
T ss_pred CcCCcEEEEEECCCEE
No 269
>KOG0286|consensus
Probab=22.73 E-value=5.7e+02 Score=23.02 Aligned_cols=173 Identities=9% Similarity=0.072 Sum_probs=85.7
Q ss_pred eecCEEEEEECCCCCeEE---cc-CCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccc
Q psy2979 164 DIVDIVYVAASMHKILHS---LG-SLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVT 237 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~---~~-~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~ 237 (400)
..-+.+-.|+..+..=+. .. .++....+.+.+.+ ++.|..-.| -.++-.+|.++++-... +.
T Consensus 116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG------D~TCalWDie~g~~~~~--f~---- 183 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG------DMTCALWDIETGQQTQV--FH---- 183 (343)
T ss_pred CcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC------CceEEEEEcccceEEEE--ec----
Confidence 334556677776442221 11 23333444555554 445555444 24567788888764332 11
Q ss_pred ccEE-------EEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE--ECCeEEEEcCcCCCCC
Q psy2979 238 SPAV-------VAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA--LDSCIYVLGGWHASTE 308 (400)
Q Consensus 238 ~~~~-------~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~ 308 (400)
+|+. .-.+++.||.||. |. ....+|.....-. ..++..-..-.++. -+|.-|+.|-.
T Consensus 184 GH~gDV~slsl~p~~~ntFvSg~c---D~----~aklWD~R~~~c~--qtF~ghesDINsv~ffP~G~afatGSD----- 249 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPSDGNTFVSGGC---DK----SAKLWDVRSGQCV--QTFEGHESDINSVRFFPSGDAFATGSD----- 249 (343)
T ss_pred CCcccEEEEecCCCCCCeEEeccc---cc----ceeeeeccCccee--EeecccccccceEEEccCCCeeeecCC-----
Confidence 2221 1127889999999 54 4555666544221 11221111111222 25666666644
Q ss_pred CCCeEEEEECCCCeEEEccCCcCccCcceEE--EECCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 309 NTNRVECYHIAENTWEYKSPMKEKRYRPGIA--VIDGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 309 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~--~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
..+.-.||...++=..+-..+..-.+...+ ...|++...|.. + ..+.++|.-..
T Consensus 250 -D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~-d-----~~c~vWDtlk~ 305 (343)
T KOG0286|consen 250 -DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYD-D-----FTCNVWDTLKG 305 (343)
T ss_pred -CceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeec-C-----CceeEeecccc
Confidence 346778888877633322222222223333 337888888754 2 34566765443
No 270
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=22.54 E-value=6.3e+02 Score=23.44 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=62.4
Q ss_pred eEEEEeCC-----CCceeecc-CCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEE-ECCC----C-eEEEcc-CCc
Q psy2979 264 QVQRYNPK-----VNQWQDLA-PMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECY-HIAE----N-TWEYKS-PMK 330 (400)
Q Consensus 264 ~v~~yd~~-----~~~W~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y-d~~~----~-~W~~~~-~~~ 330 (400)
.|.+++.. .++++.++ .+..+ .+++...+.+|+.. ...+++| |... + +-+.+. .++
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p---~Gi~~~~~GlyV~~--------~~~i~~~~d~~gdg~ad~~~~~l~~~~~ 116 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMV---TGLAVAVGGVYVAT--------PPDILFLRDKDGDDKADGEREVLLSGFG 116 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCc---cceeEecCCEEEeC--------CCeEEEEeCCCCCCCCCCccEEEEEccC
Confidence 56666442 23455554 23333 44555544488864 3467777 4322 1 333332 233
Q ss_pred Cc-----cCcceEEE-ECCEEEEEcCccCC-------------CCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcc
Q psy2979 331 EK-----RYRPGIAV-IDGKIYVLGGEEGW-------------DGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQI 391 (400)
Q Consensus 331 ~~-----~~~~~~~~-~~~~lyv~GG~~~~-------------~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 391 (400)
.. +..++++. .+|+||+.-|.... ......+++|||.+...+.+.. .-|.-.+++.-..
T Consensus 117 ~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~--G~rnp~Gl~~d~~ 194 (367)
T TIGR02604 117 GQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH--GFQNPYGHSVDSW 194 (367)
T ss_pred CCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec--CcCCCccceECCC
Confidence 32 11222222 37899997663110 0112469999999988877653 2354556666544
Q ss_pred cccccc
Q psy2979 392 HKSQFV 397 (400)
Q Consensus 392 ~~~~~~ 397 (400)
...++.
T Consensus 195 G~l~~t 200 (367)
T TIGR02604 195 GDVFFC 200 (367)
T ss_pred CCEEEE
Confidence 444443
No 271
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=22.27 E-value=6.2e+02 Score=23.30 Aligned_cols=242 Identities=14% Similarity=0.100 Sum_probs=0.0
Q ss_pred CcEEEEEeccCCCcccceEEEEEcCCCc---eEEccCCcccceeeeEEEECCeEEEEE-----eecCEEEEEECCCCCeE
Q psy2979 109 INVIIAVGGEDDKVVLRSVEGFCVKTKV---WKTLSCLPFAISKHGLVVSGRNTIYCL-----DIVDIVYVAASMHKILH 180 (400)
Q Consensus 109 ~~~i~~~gg~~~~~~~~~~~~yd~~~~~---w~~~~~~~~~~~~~~~~~~~~~~iyv~-----~~~~~~~~yd~~~~~w~ 180 (400)
+.....+|.+. .....-++.|+..+.+ |....--......+-...-+++.+|++ ...-..+..|+..++.+
T Consensus 1 m~~~~YiGtyT-~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt 79 (346)
T COG2706 1 MKQTVYIGTYT-KRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT 79 (346)
T ss_pred CceEEEEeeec-ccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE
Q ss_pred EccCCCCccee-eeEEEECCEEEEEcccCCCCCCCeEEEEeCCC--------CceEEccCCCCcc-----cccEEEEeCC
Q psy2979 181 SLGSLKFDFDV-SGIAMLDGFVYAVGGWDGSCRLDSVERYDPTK--------NEWSYIEPMKLAV-----TSPAVVAHEG 246 (400)
Q Consensus 181 ~~~~~~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~--------~~W~~~~~l~~~~-----~~~~~~~~~~ 246 (400)
.+..-+.+-.. ..+++..+.=|++.. +-....+.+|-..+ +.-....+-|.+| .+++-..-++
T Consensus 80 ~ln~~~~~g~~p~yvsvd~~g~~vf~A---nY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~ 156 (346)
T COG2706 80 FLNRQTLPGSPPCYVSVDEDGRFVFVA---NYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG 156 (346)
T ss_pred EeeccccCCCCCeEEEECCCCCEEEEE---EccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC
Q ss_pred EEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC-CCceeeeEEEE---CCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 247 MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML-IPRSGAAICAL---DSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 247 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
++.+.--.. .+.+..|+.....-+...+.. .+-++..-.+. +..+|++.-.+. .-.|+.||+..++
T Consensus 157 ~~l~v~DLG------~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~s----tV~v~~y~~~~g~ 226 (346)
T COG2706 157 RYLVVPDLG------TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNS----TVDVLEYNPAVGK 226 (346)
T ss_pred CEEEEeecC------CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCC----EEEEEEEcCCCce
Q ss_pred EEEcc---CCc---CccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 323 WEYKS---PMK---EKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 323 W~~~~---~~~---~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+.++ .+| .+..+.++..+ +..||+.--. .++|.+|....+.
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg------~dsI~~f~V~~~~ 277 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG------HDSIAVFSVDPDG 277 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCC------CCeEEEEEEcCCC
No 272
>KOG2714|consensus
Probab=22.13 E-value=93 Score=29.28 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=48.2
Q ss_pred eEEEECCeEEehhhHHHhhcCc--cccccceeecC-----------CCCHH---HHHHHhhhcccccCchhHH-HHHHHH
Q psy2979 20 VTLCVDGSKFPAHRVVLAASSP--YFKVLETIRLP-----------QLSPY---FLHDCVEQCAIIKNNPQCA-QLVEEA 82 (400)
Q Consensus 20 v~l~~~~~~~~~hr~vLaa~s~--yf~~m~~vrl~-----------~l~~~---~l~~~i~~~~l~~~~~~c~-~~l~~a 82 (400)
|.|.|+|+.|.--+.-|+.+-+ +|.+|..=|+. .=+|+ .|++++.|++|-.....-. .++.+|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~llhdEA 92 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPERLLHDEA 92 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhhhhhhhh
Confidence 4699999999999999988773 77777542222 22333 6888999998855433333 445588
Q ss_pred HhcCCCccc
Q psy2979 83 KLFHLLPDR 91 (400)
Q Consensus 83 ~~~~~~~~~ 91 (400)
+.|-+.+..
T Consensus 93 ~fYGl~~ll 101 (465)
T KOG2714|consen 93 MFYGLTPLL 101 (465)
T ss_pred hhcCcHHHH
Confidence 877555443
No 273
>KOG0285|consensus
Probab=22.04 E-value=6.4e+02 Score=23.40 Aligned_cols=100 Identities=14% Similarity=0.183 Sum_probs=53.8
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEc-cCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCcee
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI-EPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 276 (400)
.+.-|+.|.-+ .++-++|+.+++-..- +..-.. .-.+++-+..-|+|... .+ ..|-|||...++..
T Consensus 162 ~n~wf~tgs~D-----rtikIwDlatg~LkltltGhi~~--vr~vavS~rHpYlFs~g---ed---k~VKCwDLe~nkvI 228 (460)
T KOG0285|consen 162 GNEWFATGSAD-----RTIKIWDLATGQLKLTLTGHIET--VRGVAVSKRHPYLFSAG---ED---KQVKCWDLEYNKVI 228 (460)
T ss_pred CceeEEecCCC-----ceeEEEEcccCeEEEeecchhhe--eeeeeecccCceEEEec---CC---CeeEEEechhhhhH
Confidence 34555555543 4577889998875331 211111 12344555556666443 22 37899999888643
Q ss_pred eccCCCCCceeeeEEE-----E-CCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 277 DLAPMLIPRSGAAICA-----L-DSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 277 ~~~~~~~~r~~~~~~~-----~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
+- .++|-..+ + -..+.+.||. ...+-.+|..+..
T Consensus 229 R~------YhGHlS~V~~L~lhPTldvl~t~gr------Dst~RvWDiRtr~ 268 (460)
T KOG0285|consen 229 RH------YHGHLSGVYCLDLHPTLDVLVTGGR------DSTIRVWDIRTRA 268 (460)
T ss_pred HH------hccccceeEEEeccccceeEEecCC------cceEEEeeecccc
Confidence 21 12222222 2 2456677776 3456677776654
No 274
>KOG2111|consensus
Probab=21.83 E-value=6.1e+02 Score=23.06 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=34.3
Q ss_pred CCeEEEEcCcCCCCCCCCeEEEEECCCCeEE-Ecc---CCc--CccCcceEEEECCEEEEEc
Q psy2979 294 DSCIYVLGGWHASTENTNRVECYHIAENTWE-YKS---PMK--EKRYRPGIAVIDGKIYVLG 349 (400)
Q Consensus 294 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~---~~~--~~~~~~~~~~~~~~lyv~G 349 (400)
-+.+-++||.+.+....+++.++|-...+-. ++. +.. .-+..+-++++.++|||+-
T Consensus 58 ~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~Vyt 119 (346)
T KOG2111|consen 58 SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYT 119 (346)
T ss_pred hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEE
Confidence 4667778887766655899999985444322 221 111 1234455777788888875
No 275
>KOG0263|consensus
Probab=21.62 E-value=8.8e+02 Score=24.84 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=34.8
Q ss_pred CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCC--CceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCC
Q psy2979 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI--PRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAE 320 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~ 320 (400)
.|+-.+.|+. ++ .+-.||..+.. .+..+.. .--..-....+|.+++.||. -++|-.+|..+
T Consensus 588 ~Gr~LaSg~e---d~----~I~iWDl~~~~--~v~~l~~Ht~ti~SlsFS~dg~vLasgg~------DnsV~lWD~~~ 650 (707)
T KOG0263|consen 588 CGRYLASGDE---DG----LIKIWDLANGS--LVKQLKGHTGTIYSLSFSRDGNVLASGGA------DNSVRLWDLTK 650 (707)
T ss_pred CCceEeeccc---CC----cEEEEEcCCCc--chhhhhcccCceeEEEEecCCCEEEecCC------CCeEEEEEchh
Confidence 6666666666 44 57778876542 1222221 11122233458999999998 45666666543
No 276
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.26 E-value=6.2e+02 Score=22.94 Aligned_cols=239 Identities=15% Similarity=0.128 Sum_probs=118.4
Q ss_pred cceeeeEEEEC-CeEEEEE--eecCEEEEEECCCCCeEEccCCCCcceeee--EEEECC-EEEEEcccCCCCCCCeEEEE
Q psy2979 146 AISKHGLVVSG-RNTIYCL--DIVDIVYVAASMHKILHSLGSLKFDFDVSG--IAMLDG-FVYAVGGWDGSCRLDSVERY 219 (400)
Q Consensus 146 ~~~~~~~~~~~-~~~iyv~--~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~--~~~~~~-~iyv~GG~~~~~~~~~v~~y 219 (400)
|-..|+++... ...+.++ ........+|+.+++-...-..+..|.+++ +..-++ .+|+.=... .....-+-+|
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~-~~g~G~IgVy 82 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDY-ETGRGVIGVY 82 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecccc-CCCcEEEEEE
Confidence 33445666554 2214444 455567889999887554434455565544 444444 566643221 2223457889
Q ss_pred eCCCCceEEccCCCC-cccccEEEEe-CC-EEEEE-cCccc-cC-CCC-------cceEEEEeCCCCceeeccCCCCC--
Q psy2979 220 DPTKNEWSYIEPMKL-AVTSPAVVAH-EG-MLYVT-GGAIL-ED-GDG-------IEQVQRYNPKVNQWQDLAPMLIP-- 284 (400)
Q Consensus 220 d~~~~~W~~~~~l~~-~~~~~~~~~~-~~-~iyv~-GG~~~-~~-~~~-------~~~v~~yd~~~~~W~~~~~~~~~-- 284 (400)
|.. ++...+...+. ...-|-+... ++ .+.|. ||..- ++ +.. ..++-..|..+.+-...-.+|..
T Consensus 83 d~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 83 DAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH 161 (305)
T ss_pred ECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc
Confidence 988 66777766553 3334444443 44 34444 44321 11 111 34556677777664333233321
Q ss_pred --ceeeeEEEECCeEEEEcC-cCCCC-CCCCeEEEEECCCCeEEEccCCcC------ccCcceEEEE-CC-EEEEEcCcc
Q psy2979 285 --RSGAAICALDSCIYVLGG-WHAST-ENTNRVECYHIAENTWEYKSPMKE------KRYRPGIAVI-DG-KIYVLGGEE 352 (400)
Q Consensus 285 --r~~~~~~~~~~~iyv~GG-~~~~~-~~~~~v~~yd~~~~~W~~~~~~~~------~~~~~~~~~~-~~-~lyv~GG~~ 352 (400)
--.|-++.-+|. .++|. +.+.. ....-+..++.... -+.+ ++|. ..+..++++. ++ .+.+..-.
T Consensus 162 ~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~-~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr- 237 (305)
T PF07433_consen 162 QLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGA-LRLL-PAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR- 237 (305)
T ss_pred ccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCc-ceec-cCChHHHHhhCCceEEEEEeCCCCEEEEECCC-
Confidence 122333333444 44444 32221 11334445544332 1111 1221 1122233332 33 34444322
Q ss_pred CCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcccccccccC
Q psy2979 353 GWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 353 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
-+.+.+||..++.|.....++.. ++++..++. ++..+|
T Consensus 238 -----Gg~~~~~d~~tg~~~~~~~l~D~---cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 238 -----GGRVAVWDAATGRLLGSVPLPDA---CGVAPTDDG-FLVSSG 275 (305)
T ss_pred -----CCEEEEEECCCCCEeeccccCce---eeeeecCCc-eEEeCC
Confidence 35688999999999998777754 777777665 444444
No 277
>KOG1517|consensus
Probab=20.75 E-value=1.1e+03 Score=25.68 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=45.8
Q ss_pred eEEccCC-CCcceeeeEEEE---CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccE----EEEeCCEEEE
Q psy2979 179 LHSLGSL-KFDFDVSGIAML---DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPA----VVAHEGMLYV 250 (400)
Q Consensus 179 w~~~~~~-~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~----~~~~~~~iyv 250 (400)
|..+..+ +.+|..-.++.. .|++++.|+ ...+-++|....+ .+.++|..-.... +-.+++.+++
T Consensus 1154 w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd------~r~IRIWDa~~E~--~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD------VRSIRIWDAHKEQ--VVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred eccccccCccCCCCCeeeehhhhCCeEEecCC------eeEEEEEecccce--eEeecccCCCccceeecccccCCceEE
Confidence 5555553 455544433332 678888776 3568888987664 4556664422211 1224578887
Q ss_pred EcCccccCCCCcceEEEEeCC
Q psy2979 251 TGGAILEDGDGIEQVQRYNPK 271 (400)
Q Consensus 251 ~GG~~~~~~~~~~~v~~yd~~ 271 (400)
.|=. || ++-.||-.
T Consensus 1226 AGfa---DG----svRvyD~R 1239 (1387)
T KOG1517|consen 1226 AGFA---DG----SVRVYDRR 1239 (1387)
T ss_pred Eeec---CC----ceEEeecc
Confidence 7655 65 57778753
No 278
>KOG1963|consensus
Probab=20.53 E-value=6.6e+02 Score=26.06 Aligned_cols=95 Identities=12% Similarity=0.158 Sum_probs=50.3
Q ss_pred CeEEEEeCCCCceEEccCCCCccccc--EEEEeC---CEEEEEcCccccCCCCcceEEEE------eCCCCceeeccCCC
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSP--AVVAHE---GMLYVTGGAILEDGDGIEQVQRY------NPKVNQWQDLAPML 282 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~--~~~~~~---~~iyv~GG~~~~~~~~~~~v~~y------d~~~~~W~~~~~~~ 282 (400)
-..|.|++.+.+|........|.... +++..+ ..-.+..|. ++ .-.+|++ .+....|+-.+--.
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~---dg--~~KiW~~~~~~n~~k~~s~W~c~~i~s 506 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASV---DG--DFKIWVFTDDSNIYKKSSNWTCKAIGS 506 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEecc---CC--eEEEEEEecccccCcCccceEEeeeec
Confidence 35789999999998776544333333 332222 113344333 33 2367887 66677788765322
Q ss_pred CCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCC
Q psy2979 283 IPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAE 320 (400)
Q Consensus 283 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~ 320 (400)
..+....+... +|.+..+|- .+.+-.||+.+
T Consensus 507 y~k~~i~a~~fs~dGslla~s~-------~~~Itiwd~~~ 539 (792)
T KOG1963|consen 507 YHKTPITALCFSQDGSLLAVSF-------DDTITIWDYDT 539 (792)
T ss_pred cccCcccchhhcCCCcEEEEec-------CCEEEEecCCC
Confidence 22222222222 556665553 34666666665
Done!