Query psy2979
Match_columns 400
No_of_seqs 271 out of 2840
Neff 10.4
Searched_HMMs 29240
Date Fri Aug 16 22:27:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xn4_A Kelch-like protein 2; s 100.0 1.7E-52 5.7E-57 379.0 36.6 288 98-392 4-301 (302)
2 1zgk_A Kelch-like ECH-associat 100.0 4E-51 1.4E-55 370.9 37.7 279 104-389 19-308 (308)
3 3ii7_A Kelch-like protein 7; p 100.0 2.6E-51 9E-56 371.8 35.4 285 100-392 4-296 (306)
4 2vpj_A Kelch-like protein 12; 100.0 2.1E-51 7E-56 371.7 34.6 288 96-391 3-301 (301)
5 4asc_A Kelch repeat and BTB do 100.0 4E-49 1.4E-53 358.9 31.1 277 108-398 3-305 (315)
6 2woz_A Kelch repeat and BTB do 100.0 3.8E-49 1.3E-53 359.6 30.6 283 100-396 6-313 (318)
7 1zgk_A Kelch-like ECH-associat 100.0 7.9E-45 2.7E-49 329.5 29.3 250 143-398 11-270 (308)
8 2xn4_A Kelch-like protein 2; s 100.0 1.3E-43 4.4E-48 320.7 30.9 241 153-398 12-259 (302)
9 3ii7_A Kelch-like protein 7; p 100.0 5.7E-43 2E-47 317.0 30.1 234 160-398 14-255 (306)
10 2vpj_A Kelch-like protein 12; 100.0 1.4E-42 4.7E-47 313.8 32.0 238 155-398 13-261 (301)
11 2uvk_A YJHT; unknown function, 100.0 3E-42 1E-46 319.2 27.0 256 139-398 2-324 (357)
12 4asc_A Kelch repeat and BTB do 100.0 9.1E-42 3.1E-46 310.4 26.9 236 160-398 7-251 (315)
13 2uvk_A YJHT; unknown function, 100.0 1.7E-41 5.7E-46 314.2 28.2 264 109-380 19-354 (357)
14 2woz_A Kelch repeat and BTB do 100.0 1.3E-40 4.3E-45 303.2 26.1 235 160-398 18-261 (318)
15 2zwa_A Leucine carboxyl methyl 100.0 4.7E-37 1.6E-41 306.3 28.4 255 136-399 378-673 (695)
16 1k3i_A Galactose oxidase precu 100.0 1.9E-37 6.6E-42 308.8 19.2 284 109-398 197-529 (656)
17 2zwa_A Leucine carboxyl methyl 100.0 9.3E-38 3.2E-42 311.4 15.4 254 108-368 396-694 (695)
18 1k3i_A Galactose oxidase precu 100.0 1E-33 3.5E-38 282.0 16.6 263 127-399 168-474 (656)
19 3m5b_A Zinc finger and BTB dom 99.7 9.9E-17 3.4E-21 122.2 9.6 88 2-91 17-108 (119)
20 3b84_A Zinc finger and BTB dom 99.7 6.6E-17 2.3E-21 123.7 6.5 90 2-91 9-107 (119)
21 2yy9_A Zinc finger and BTB dom 99.7 9.4E-17 3.2E-21 125.6 6.8 91 2-92 10-109 (135)
22 3ohu_A Transcription regulator 99.7 1.7E-16 5.7E-21 122.7 7.9 91 2-92 17-119 (125)
23 3fkc_A Transcriptional regulat 99.7 1.4E-16 4.9E-21 121.0 7.3 87 2-88 16-111 (116)
24 2ihc_A Transcription regulator 99.6 1.6E-16 5.6E-21 122.4 6.9 92 2-93 14-117 (124)
25 2q81_A MIZ-1 protein; BTB/POZ 99.6 1.3E-16 4.4E-21 122.0 6.2 89 2-90 12-108 (119)
26 1buo_A POZ domain, protein (pr 99.6 2.3E-16 7.7E-21 121.1 7.3 89 2-90 13-109 (121)
27 3ga1_A Nucleus accumbens-assoc 99.6 3.3E-16 1.1E-20 121.7 8.2 92 2-93 18-119 (129)
28 2if5_A Zinc finger and BTB dom 99.6 5.1E-16 1.8E-20 119.1 8.2 89 2-90 10-111 (120)
29 2vpk_A Myoneurin; transcriptio 99.6 4.1E-16 1.4E-20 118.8 7.6 89 2-90 7-106 (116)
30 2z8h_A Transcription regulator 99.6 3E-16 1E-20 123.4 6.4 92 2-93 21-124 (138)
31 2ppi_A Gigaxonin; BTB domain, 99.6 4.6E-16 1.6E-20 123.0 7.1 90 2-91 32-136 (144)
32 1r29_A B-cell lymphoma 6 prote 99.6 8.6E-16 3E-20 119.0 8.0 89 2-90 14-115 (127)
33 4eoz_A Speckle-type POZ protei 99.5 6.3E-14 2.2E-18 111.3 7.9 90 2-91 10-112 (145)
34 3i3n_A Kelch-like protein 11; 99.5 5E-14 1.7E-18 124.7 7.4 89 2-90 17-127 (279)
35 3hve_A Gigaxonin; ubiquitin, c 99.5 3.3E-14 1.1E-18 124.3 5.9 90 2-91 16-120 (256)
36 3htm_A Speckle-type POZ protei 99.5 9E-14 3.1E-18 113.9 7.9 90 2-91 19-121 (172)
37 2vkp_A BTB/POZ domain-containi 99.5 5E-14 1.7E-18 105.9 5.7 81 10-90 1-97 (109)
38 3hqi_A Speckle-type POZ protei 99.3 2E-12 6.8E-17 116.4 7.6 89 3-91 160-261 (312)
39 3dsm_A Uncharacterized protein 98.9 1.1E-05 3.7E-10 72.8 30.7 238 124-389 16-275 (328)
40 3mbr_X Glutamine cyclotransfer 98.7 4.1E-06 1.4E-10 71.1 21.2 185 190-399 22-222 (243)
41 3q7m_A Lipoprotein YFGL, BAMB; 98.7 0.00016 5.4E-09 66.2 32.7 212 125-373 63-303 (376)
42 3dsm_A Uncharacterized protein 98.6 3.7E-05 1.3E-09 69.2 27.1 208 166-396 16-240 (328)
43 3q7m_A Lipoprotein YFGL, BAMB; 98.6 0.0002 6.8E-09 65.6 32.0 230 125-395 113-364 (376)
44 3nol_A Glutamine cyclotransfer 98.6 1.3E-05 4.3E-10 68.7 19.7 184 191-399 45-243 (262)
45 1l0q_A Surface layer protein; 98.5 1.4E-05 4.7E-10 73.5 20.5 247 110-396 2-259 (391)
46 3mbr_X Glutamine cyclotransfer 98.5 7.8E-05 2.7E-09 63.2 22.3 181 149-351 23-224 (243)
47 2z2n_A Virginiamycin B lyase; 98.4 0.00075 2.6E-08 59.0 30.0 238 125-397 36-282 (299)
48 2qc5_A Streptogramin B lactona 98.4 0.00089 3E-08 58.6 28.5 216 125-374 41-265 (300)
49 3nol_A Glutamine cyclotransfer 98.3 9.1E-05 3.1E-09 63.4 19.6 180 150-351 46-245 (262)
50 3nok_A Glutaminyl cyclase; bet 98.3 8.6E-05 2.9E-09 63.6 18.8 181 191-399 57-253 (268)
51 2iwa_A Glutamine cyclotransfer 98.2 0.00027 9.4E-09 61.0 20.5 183 192-399 24-224 (266)
52 4ajy_C Transcription elongatio 98.2 3E-06 1E-10 61.2 5.8 66 20-86 4-96 (97)
53 3v9f_A Two-component system se 98.2 0.00025 8.5E-09 71.8 22.1 238 127-399 385-645 (781)
54 1rwi_B Serine/threonine-protei 98.1 0.00075 2.6E-08 58.3 22.2 214 125-369 46-265 (270)
55 2z2n_A Virginiamycin B lyase; 98.1 0.0027 9.1E-08 55.4 26.1 193 150-374 18-218 (299)
56 3hfq_A Uncharacterized protein 98.1 0.00064 2.2E-08 61.2 22.4 248 125-397 18-302 (347)
57 4a2l_A BT_4663, two-component 98.1 0.00094 3.2E-08 67.7 25.8 239 126-399 378-648 (795)
58 1l0q_A Surface layer protein; 98.1 0.00026 9E-09 64.8 19.7 225 110-372 44-279 (391)
59 3vgz_A Uncharacterized protein 98.1 0.0033 1.1E-07 56.3 26.5 243 124-397 68-330 (353)
60 1q7f_A NHL, brain tumor CG1071 98.1 0.004 1.4E-07 54.2 26.2 199 151-374 34-244 (286)
61 1ri6_A Putative isomerase YBHE 98.1 0.0023 7.8E-08 57.0 24.8 259 110-397 5-293 (343)
62 2qc5_A Streptogramin B lactona 98.1 0.0043 1.5E-07 54.1 25.5 193 150-374 23-223 (300)
63 2iwa_A Glutamine cyclotransfer 98.0 0.0046 1.6E-07 53.3 24.3 191 150-368 24-237 (266)
64 3u4y_A Uncharacterized protein 98.0 0.001 3.4E-08 59.3 20.2 233 110-375 10-259 (331)
65 3bws_A Protein LP49; two-domai 98.0 0.00038 1.3E-08 64.7 17.5 245 126-397 102-361 (433)
66 1ri6_A Putative isomerase YBHE 97.9 0.0062 2.1E-07 54.2 24.5 244 125-391 60-333 (343)
67 3i3n_A Kelch-like protein 11; 97.9 9.8E-07 3.3E-11 77.7 -1.0 90 2-91 165-273 (279)
68 1rwi_B Serine/threonine-protei 97.9 0.002 6.8E-08 55.5 20.1 191 150-371 27-225 (270)
69 3vgz_A Uncharacterized protein 97.8 0.0095 3.2E-07 53.3 23.8 201 166-396 68-287 (353)
70 3v9f_A Two-component system se 97.8 0.0033 1.1E-07 63.5 22.5 208 126-368 428-656 (781)
71 1q7f_A NHL, brain tumor CG1071 97.8 0.014 4.9E-07 50.6 29.6 217 125-368 51-280 (286)
72 2ovr_B FBW7, F-BOX/WD repeat p 97.8 0.0096 3.3E-07 55.5 23.8 212 125-371 139-351 (445)
73 2ast_A S-phase kinase-associat 97.8 3.1E-05 1.1E-09 61.5 5.3 71 20-91 3-115 (159)
74 1k8k_C P40, ARP2/3 complex 41 97.7 0.0076 2.6E-07 54.3 21.8 237 111-377 21-285 (372)
75 2p4o_A Hypothetical protein; p 97.7 0.016 5.5E-07 51.1 23.2 217 143-389 28-262 (306)
76 3bws_A Protein LP49; two-domai 97.7 0.016 5.3E-07 53.6 24.1 258 110-397 134-417 (433)
77 1gxr_A ESG1, transducin-like e 97.7 0.015 5.2E-07 51.3 23.2 241 125-397 72-323 (337)
78 2ovr_B FBW7, F-BOX/WD repeat p 97.7 0.025 8.5E-07 52.6 25.4 216 125-372 179-395 (445)
79 3scy_A Hypothetical bacterial 97.7 0.014 5E-07 52.5 23.1 264 110-397 13-322 (361)
80 3jrp_A Fusion protein of prote 97.7 0.0044 1.5E-07 56.0 19.5 239 111-379 24-299 (379)
81 1nir_A Nitrite reductase; hemo 97.7 0.02 6.7E-07 55.2 24.4 257 109-398 148-438 (543)
82 3nok_A Glutaminyl cyclase; bet 97.6 0.00094 3.2E-08 57.2 13.1 109 239-370 58-166 (268)
83 4a2l_A BT_4663, two-component 97.6 0.0067 2.3E-07 61.4 21.7 206 126-368 428-659 (795)
84 3jrp_A Fusion protein of prote 97.6 0.0049 1.7E-07 55.7 18.4 179 167-369 33-241 (379)
85 2hqs_A Protein TOLB; TOLB, PAL 97.6 0.02 7E-07 52.9 22.8 225 125-375 159-394 (415)
86 1pjx_A Dfpase, DIISOPROPYLFLUO 97.6 0.01 3.4E-07 52.2 19.8 218 125-369 46-300 (314)
87 3g4e_A Regucalcin; six bladed 97.6 0.0062 2.1E-07 53.6 18.0 193 160-378 27-239 (297)
88 2ojh_A Uncharacterized protein 97.5 0.0097 3.3E-07 51.4 19.0 234 123-376 20-266 (297)
89 3no2_A Uncharacterized protein 97.5 0.04 1.4E-06 47.8 26.8 232 110-375 5-261 (276)
90 1pjx_A Dfpase, DIISOPROPYLFLUO 97.5 0.011 3.9E-07 51.9 19.2 188 156-370 28-258 (314)
91 3v7d_B Cell division control p 97.5 0.052 1.8E-06 50.7 24.7 218 125-370 142-383 (464)
92 3ow8_A WD repeat-containing pr 97.5 0.028 9.6E-07 49.9 21.6 177 164-370 99-281 (321)
93 4ery_A WD repeat-containing pr 97.5 0.047 1.6E-06 47.9 25.9 226 111-370 36-270 (312)
94 4aez_A CDC20, WD repeat-contai 97.5 0.03 1E-06 51.4 22.0 244 125-398 113-367 (401)
95 1r5m_A SIR4-interacting protei 97.5 0.021 7.1E-07 52.3 21.1 224 111-370 121-363 (425)
96 3u4y_A Uncharacterized protein 97.4 0.012 4.1E-07 52.2 18.5 209 160-397 12-237 (331)
97 2ynn_A Coatomer subunit beta'; 97.4 0.055 1.9E-06 47.5 22.4 227 110-372 25-263 (304)
98 1qks_A Cytochrome CD1 nitrite 97.4 0.063 2.2E-06 51.8 23.6 259 110-397 167-456 (567)
99 3v7d_B Cell division control p 97.4 0.095 3.3E-06 48.8 25.3 148 198-373 279-426 (464)
100 1p22_A F-BOX/WD-repeat protein 97.3 0.015 5.2E-07 54.0 18.8 223 110-369 143-366 (435)
101 2xbg_A YCF48-like protein; pho 97.3 0.076 2.6E-06 47.3 23.7 208 135-375 25-242 (327)
102 2dg1_A DRP35, lactonase; beta 97.3 0.059 2E-06 47.8 22.0 235 110-368 56-316 (333)
103 3hfq_A Uncharacterized protein 97.3 0.028 9.7E-07 50.2 20.0 241 125-392 63-343 (347)
104 1got_B GT-beta; complex (GTP-b 97.3 0.079 2.7E-06 47.3 25.5 225 112-370 69-303 (340)
105 3ow8_A WD repeat-containing pr 97.3 0.065 2.2E-06 47.5 21.8 216 112-366 94-319 (321)
106 3no2_A Uncharacterized protein 97.3 0.029 9.9E-07 48.7 18.7 202 164-398 12-230 (276)
107 1ijq_A LDL receptor, low-densi 97.3 0.084 2.9E-06 46.8 26.6 212 126-370 11-240 (316)
108 3mkq_A Coatomer beta'-subunit; 97.3 0.036 1.2E-06 55.9 22.1 226 112-371 27-262 (814)
109 1pby_B Quinohemoprotein amine 97.3 0.026 8.8E-07 49.9 18.8 140 125-276 11-167 (337)
110 3v65_B Low-density lipoprotein 97.3 0.11 3.7E-06 47.5 26.2 211 125-369 96-319 (386)
111 2fp8_A Strictosidine synthase; 97.3 0.079 2.7E-06 46.9 21.6 224 125-369 40-314 (322)
112 1sq9_A Antiviral protein SKI8; 97.2 0.11 3.7E-06 47.1 23.6 189 160-370 84-324 (397)
113 4aez_A CDC20, WD repeat-contai 97.2 0.12 4.1E-06 47.2 24.7 217 125-370 156-382 (401)
114 1p22_A F-BOX/WD-repeat protein 97.2 0.016 5.4E-07 53.9 17.2 216 125-373 193-419 (435)
115 3g4e_A Regucalcin; six bladed 97.2 0.093 3.2E-06 45.8 21.3 213 110-351 25-262 (297)
116 1npe_A Nidogen, entactin; glyc 97.2 0.088 3E-06 45.1 28.1 195 149-372 38-242 (267)
117 2xbg_A YCF48-like protein; pho 97.2 0.12 4E-06 46.1 27.9 234 134-398 65-310 (327)
118 3fvz_A Peptidyl-glycine alpha- 97.2 0.12 4.1E-06 45.9 28.6 226 125-368 69-322 (329)
119 3scy_A Hypothetical bacterial 97.2 0.12 4E-06 46.4 22.1 225 128-375 80-346 (361)
120 2pbi_B Guanine nucleotide-bind 97.1 0.14 4.8E-06 46.0 23.6 145 198-370 165-317 (354)
121 1r5m_A SIR4-interacting protei 97.1 0.034 1.2E-06 50.8 18.1 176 125-322 171-363 (425)
122 3vl1_A 26S proteasome regulato 97.1 0.087 3E-06 48.2 20.7 215 125-370 78-324 (420)
123 1gxr_A ESG1, transducin-like e 97.1 0.085 2.9E-06 46.4 19.8 186 160-373 65-260 (337)
124 1got_B GT-beta; complex (GTP-b 97.0 0.16 5.5E-06 45.2 22.3 142 160-322 157-303 (340)
125 2hes_X YDR267CP; beta-propelle 97.0 0.096 3.3E-06 46.5 20.0 235 112-376 26-288 (330)
126 3vl1_A 26S proteasome regulato 97.0 0.16 5.5E-06 46.4 22.1 142 160-324 71-216 (420)
127 2dg1_A DRP35, lactonase; beta 97.0 0.06 2E-06 47.7 18.5 198 156-374 55-269 (333)
128 3jro_A Fusion protein of prote 97.0 0.022 7.4E-07 57.3 17.1 236 112-378 23-296 (753)
129 4ery_A WD repeat-containing pr 97.0 0.15 5.1E-06 44.6 22.1 175 167-371 45-226 (312)
130 3ott_A Two-component system se 97.0 0.17 5.9E-06 50.7 23.5 208 126-368 393-626 (758)
131 3hve_A Gigaxonin; ubiquitin, c 97.0 2.3E-05 7.7E-10 67.9 -4.4 79 2-80 157-255 (256)
132 3v64_C Agrin; beta propeller, 97.0 0.19 6.5E-06 45.2 28.1 210 126-369 54-276 (349)
133 2aq5_A Coronin-1A; WD40 repeat 97.0 0.1 3.6E-06 47.6 20.2 216 160-396 96-329 (402)
134 1vyh_C Platelet-activating fac 97.0 0.12 4E-06 47.6 20.5 221 111-370 121-371 (410)
135 2ad6_A Methanol dehydrogenase 97.0 0.3 1E-05 47.2 25.0 117 152-278 58-193 (571)
136 3odt_A Protein DOA1; ubiquitin 96.9 0.094 3.2E-06 45.6 18.9 186 160-377 117-305 (313)
137 3e5z_A Putative gluconolactona 96.9 0.17 5.9E-06 43.9 22.5 211 125-371 50-289 (296)
138 3dwl_C Actin-related protein 2 96.9 0.021 7.3E-07 51.6 14.9 238 111-378 24-291 (377)
139 3jro_A Fusion protein of prote 96.9 0.037 1.3E-06 55.6 17.8 179 167-369 31-239 (753)
140 2vdu_B TRNA (guanine-N(7)-)-me 96.9 0.26 9E-06 45.7 25.0 240 110-374 115-399 (450)
141 3p5b_L Low density lipoprotein 96.9 0.25 8.6E-06 45.3 24.5 212 125-369 92-321 (400)
142 3bg1_A Protein SEC13 homolog; 96.9 0.052 1.8E-06 47.9 16.9 239 111-381 26-307 (316)
143 2z3z_A Dipeptidyl aminopeptida 96.9 0.21 7.3E-06 49.4 23.0 191 167-370 235-437 (706)
144 3hrp_A Uncharacterized protein 96.9 0.27 9.1E-06 45.3 23.7 199 150-375 134-361 (409)
145 3m0c_C LDL receptor, low-densi 96.8 0.48 1.6E-05 47.6 24.9 208 127-369 406-633 (791)
146 1pex_A Collagenase-3, MMP-13; 96.8 0.15 5.3E-06 41.9 18.9 145 193-371 28-195 (207)
147 1yfq_A Cell cycle arrest prote 96.8 0.24 8.1E-06 43.7 20.6 227 112-371 25-285 (342)
148 3ei3_B DNA damage-binding prot 96.8 0.12 4E-06 46.8 18.8 185 111-322 87-284 (383)
149 1k8k_C P40, ARP2/3 complex 41 96.8 0.046 1.6E-06 49.0 15.9 183 164-370 27-235 (372)
150 2z3z_A Dipeptidyl aminopeptida 96.8 0.21 7E-06 49.5 21.8 152 213-375 234-398 (706)
151 4gqb_B Methylosome protein 50; 96.8 0.087 3E-06 47.3 17.5 194 151-372 87-293 (344)
152 2pm7_B Protein transport prote 96.8 0.24 8.3E-06 43.0 20.8 236 111-377 22-295 (297)
153 3azo_A Aminopeptidase; POP fam 96.8 0.42 1.4E-05 46.8 23.7 234 125-375 102-376 (662)
154 2hqs_A Protein TOLB; TOLB, PAL 96.7 0.17 5.9E-06 46.6 19.7 188 167-375 159-351 (415)
155 1sq9_A Antiviral protein SKI8; 96.7 0.29 1E-05 44.2 21.1 110 198-323 197-325 (397)
156 3c5m_A Oligogalacturonate lyas 96.7 0.32 1.1E-05 43.8 23.1 234 125-376 60-337 (396)
157 3fvz_A Peptidyl-glycine alpha- 96.7 0.31 1E-05 43.2 27.5 190 168-374 70-283 (329)
158 3i2n_A WD repeat-containing pr 96.7 0.18 6E-06 44.7 18.9 188 110-321 31-244 (357)
159 1kb0_A Quinohemoprotein alcoho 96.7 0.57 2E-05 46.2 26.6 117 152-278 73-207 (677)
160 2p4o_A Hypothetical protein; p 96.7 0.3 1E-05 42.8 22.4 200 125-350 53-277 (306)
161 4e54_B DNA damage-binding prot 96.6 0.15 5.1E-06 47.2 18.6 186 111-322 133-329 (435)
162 3e5z_A Putative gluconolactona 96.6 0.3 1E-05 42.3 19.9 189 160-374 42-252 (296)
163 1pby_B Quinohemoprotein amine 96.6 0.15 5.2E-06 44.7 17.9 227 110-370 46-312 (337)
164 1fs1_B SKP1, cyclin A/CDK2-ass 96.6 0.002 6.8E-08 49.8 4.5 69 20-89 4-108 (141)
165 2ghs_A AGR_C_1268P; regucalcin 96.6 0.35 1.2E-05 42.8 21.4 183 160-374 63-266 (326)
166 3zwl_B Eukaryotic translation 96.6 0.36 1.2E-05 42.8 23.6 234 111-370 45-306 (369)
167 3fm0_A Protein CIAO1; WDR39,SG 96.6 0.046 1.6E-06 49.0 14.2 156 198-377 27-190 (345)
168 3hxj_A Pyrrolo-quinoline quino 96.6 0.22 7.4E-06 43.8 18.5 178 154-373 105-290 (330)
169 3zwl_B Eukaryotic translation 96.5 0.22 7.4E-06 44.3 18.5 182 166-373 53-254 (369)
170 3odt_A Protein DOA1; ubiquitin 96.5 0.35 1.2E-05 41.8 22.1 219 125-374 39-261 (313)
171 1itv_A MMP9; adaptive molecula 96.5 0.25 8.7E-06 40.2 17.0 144 193-370 11-176 (195)
172 3dwl_C Actin-related protein 2 96.5 0.0087 3E-07 54.2 8.9 147 198-368 22-177 (377)
173 1jmx_B Amine dehydrogenase; ox 96.5 0.27 9.3E-06 43.4 18.8 151 110-275 11-178 (349)
174 3v65_B Low-density lipoprotein 96.5 0.49 1.7E-05 43.1 23.4 198 164-395 93-303 (386)
175 2ojh_A Uncharacterized protein 96.5 0.17 5.7E-06 43.3 16.8 184 167-375 22-213 (297)
176 2ecf_A Dipeptidyl peptidase IV 96.5 0.48 1.6E-05 47.1 22.2 234 123-374 62-374 (741)
177 3b7f_A Glycosyl hydrolase, BNR 96.5 0.5 1.7E-05 43.1 21.1 194 160-379 25-274 (394)
178 3fm0_A Protein CIAO1; WDR39,SG 96.5 0.17 5.9E-06 45.2 17.1 167 167-351 38-214 (345)
179 4g56_B MGC81050 protein; prote 96.4 0.12 4.1E-06 46.6 16.1 212 126-368 116-343 (357)
180 3mmy_A MRNA export factor; mRN 96.4 0.46 1.6E-05 42.1 22.5 252 111-398 55-333 (368)
181 4aow_A Guanine nucleotide-bind 96.4 0.45 1.5E-05 41.7 21.3 143 200-369 186-338 (340)
182 3pe7_A Oligogalacturonate lyas 96.4 0.53 1.8E-05 42.4 22.7 246 125-376 60-337 (388)
183 3hrp_A Uncharacterized protein 96.4 0.6 2E-05 42.9 24.8 224 110-366 142-408 (409)
184 4g56_B MGC81050 protein; prote 96.4 0.1 3.5E-06 47.0 15.2 196 151-373 99-306 (357)
185 2aq5_A Coronin-1A; WD40 repeat 96.4 0.44 1.5E-05 43.3 19.8 178 198-396 93-283 (402)
186 1n7d_A LDL receptor, low-densi 96.3 0.11 3.9E-06 51.5 16.5 211 126-371 387-617 (699)
187 4gqb_B Methylosome protein 50; 96.3 0.37 1.3E-05 43.1 18.6 214 125-369 103-332 (344)
188 2xdw_A Prolyl endopeptidase; a 96.3 0.98 3.4E-05 44.7 25.5 235 125-376 151-424 (710)
189 3mkq_A Coatomer beta'-subunit; 96.3 0.63 2.1E-05 46.7 22.2 187 112-323 69-262 (814)
190 1kv9_A Type II quinohemoprotei 96.3 0.97 3.3E-05 44.5 28.3 117 152-278 62-195 (668)
191 2p1m_A SKP1-like protein 1A; F 96.2 0.0014 4.7E-08 51.9 1.6 43 20-63 6-56 (160)
192 3ott_A Two-component system se 96.2 1 3.4E-05 45.1 23.0 182 156-374 73-266 (758)
193 1nir_A Nitrite reductase; hemo 96.2 0.88 3E-05 43.6 21.7 227 125-370 200-460 (543)
194 1vyh_C Platelet-activating fac 96.2 0.48 1.6E-05 43.4 19.2 138 164-324 127-269 (410)
195 2pm7_B Protein transport prote 96.2 0.46 1.6E-05 41.2 18.3 151 199-373 67-245 (297)
196 2pm9_A Protein WEB1, protein t 96.2 0.34 1.2E-05 44.0 17.9 224 124-370 44-296 (416)
197 2hz6_A Endoplasmic reticulum t 96.2 0.0041 1.4E-07 56.8 4.6 182 154-374 7-200 (369)
198 3b7f_A Glycosyl hydrolase, BNR 96.2 0.75 2.6E-05 41.9 26.6 229 127-379 33-334 (394)
199 3ei3_B DNA damage-binding prot 96.1 0.38 1.3E-05 43.3 17.8 177 164-369 93-283 (383)
200 3f3f_A Nucleoporin SEH1; struc 96.1 0.65 2.2E-05 40.5 21.6 186 111-320 24-249 (351)
201 3lrv_A PRE-mRNA-splicing facto 96.1 0.73 2.5E-05 40.8 24.7 235 110-373 48-299 (343)
202 3v64_C Agrin; beta propeller, 96.0 0.79 2.7E-05 41.0 24.7 197 165-395 51-260 (349)
203 1w6s_A Methanol dehydrogenase 96.0 1.2 4.1E-05 43.2 22.6 119 151-279 57-200 (599)
204 1pgu_A Actin interacting prote 96.0 1.1 3.8E-05 43.0 21.5 143 201-369 175-329 (615)
205 2pm9_A Protein WEB1, protein t 96.0 0.73 2.5E-05 41.7 19.0 186 160-369 129-338 (416)
206 3sfz_A APAF-1, apoptotic pepti 95.9 1.6 5.4E-05 46.3 24.0 218 125-370 637-873 (1249)
207 3bg1_A Protein SEC13 homolog; 95.9 0.16 5.3E-06 44.8 13.9 67 199-277 71-142 (316)
208 3hxj_A Pyrrolo-quinoline quino 95.9 0.7 2.4E-05 40.4 18.3 185 125-349 117-312 (330)
209 1ijq_A LDL receptor, low-densi 95.9 0.82 2.8E-05 40.2 24.8 198 165-395 8-223 (316)
210 3dr2_A Exported gluconolactona 95.9 0.53 1.8E-05 41.1 17.1 193 160-374 59-273 (305)
211 1yiq_A Quinohemoprotein alcoho 95.9 1.5 5.3E-05 43.3 26.6 117 152-278 66-200 (689)
212 1jmx_B Amine dehydrogenase; ox 95.9 0.069 2.4E-06 47.4 11.4 154 198-373 10-180 (349)
213 2bkl_A Prolyl endopeptidase; m 95.9 1.1 3.8E-05 44.2 21.2 237 124-376 146-405 (695)
214 3c5m_A Oligogalacturonate lyas 95.9 0.29 9.8E-06 44.2 15.7 194 167-374 168-390 (396)
215 2pbi_B Guanine nucleotide-bind 95.9 0.93 3.2E-05 40.5 21.5 170 160-351 169-346 (354)
216 4a11_B DNA excision repair pro 95.8 0.32 1.1E-05 43.9 16.0 217 125-369 122-366 (408)
217 1su3_A Interstitial collagenas 95.8 0.34 1.1E-05 45.1 15.7 147 193-373 267-437 (450)
218 2hes_X YDR267CP; beta-propelle 95.8 0.96 3.3E-05 39.9 20.0 190 165-378 32-246 (330)
219 1pgu_A Actin interacting prote 95.7 0.68 2.3E-05 44.5 18.5 190 156-373 29-243 (615)
220 1w6s_A Methanol dehydrogenase 95.7 0.66 2.3E-05 45.0 18.0 120 194-327 58-200 (599)
221 2ynn_A Coatomer subunit beta'; 95.7 0.97 3.3E-05 39.2 19.5 185 112-324 69-263 (304)
222 3i2n_A WD repeat-containing pr 95.6 0.49 1.7E-05 41.8 16.1 136 164-321 136-292 (357)
223 4a11_B DNA excision repair pro 95.6 1.2 4.1E-05 40.0 19.2 139 164-322 119-278 (408)
224 4a0p_A LRP6, LRP-6, low-densit 95.6 1.9 6.6E-05 42.0 26.9 210 125-369 15-238 (628)
225 2ecf_A Dipeptidyl peptidase IV 95.6 2.1 7.1E-05 42.4 22.2 235 125-374 129-421 (741)
226 1kb0_A Quinohemoprotein alcoho 95.6 2 7E-05 42.3 25.4 104 125-229 87-207 (677)
227 2fp8_A Strictosidine synthase; 95.5 1.1 3.9E-05 39.2 19.5 195 160-374 33-275 (322)
228 3iuj_A Prolyl endopeptidase; h 95.5 2.1 7.2E-05 42.3 24.1 236 124-378 154-415 (693)
229 3sov_A LRP-6, low-density lipo 95.5 1.2 4.1E-05 39.3 25.2 209 125-370 13-240 (318)
230 1gen_A Gelatinase A; hydrolase 95.5 0.87 3E-05 37.7 15.8 145 193-370 35-204 (218)
231 1kv9_A Type II quinohemoprotei 95.5 2.1 7.2E-05 42.1 31.2 104 125-229 76-195 (668)
232 3p5b_L Low density lipoprotein 95.5 1.5 5E-05 40.2 22.9 199 164-395 89-305 (400)
233 3o4h_A Acylamino-acid-releasin 95.4 0.82 2.8E-05 44.0 17.9 221 125-374 90-320 (582)
234 1erj_A Transcriptional repress 95.4 1.2 4E-05 40.4 18.0 145 198-369 134-288 (393)
235 1erj_A Transcriptional repress 95.4 1.5 5.1E-05 39.7 20.3 187 111-323 136-344 (393)
236 2bkl_A Prolyl endopeptidase; m 95.4 2.4 8.2E-05 41.8 24.2 237 124-374 93-357 (695)
237 1qhu_A Protein (hemopexin); be 95.3 0.7 2.4E-05 43.0 16.1 173 156-368 158-385 (460)
238 1yiq_A Quinohemoprotein alcoho 95.3 0.45 1.5E-05 47.1 15.8 118 241-374 66-200 (689)
239 1yr2_A Prolyl oligopeptidase; 95.3 2.6 8.8E-05 42.0 23.8 234 125-376 189-449 (741)
240 3oyo_A Hemopexin fold protein 95.3 0.28 9.6E-06 40.9 12.1 99 244-367 69-197 (225)
241 3ba0_A Macrophage metalloelast 95.3 1.3 4.4E-05 39.9 17.4 147 193-373 185-355 (365)
242 3c7x_A Matrix metalloproteinas 95.3 0.5 1.7E-05 38.4 13.4 144 193-370 10-177 (196)
243 2ad6_A Methanol dehydrogenase 95.3 2.2 7.7E-05 41.0 32.5 104 125-229 73-193 (571)
244 3sfz_A APAF-1, apoptotic pepti 95.2 1.2 4E-05 47.3 19.7 138 164-323 634-777 (1249)
245 3pe7_A Oligogalacturonate lyas 95.2 1.6 5.5E-05 39.1 19.8 236 125-371 102-387 (388)
246 1qks_A Cytochrome CD1 nitrite 95.2 1.9 6.4E-05 41.5 19.4 186 160-371 169-376 (567)
247 4e54_B DNA damage-binding prot 95.1 0.066 2.3E-06 49.7 8.7 145 198-369 131-283 (435)
248 2vdu_B TRNA (guanine-N(7)-)-me 95.1 2.1 7.1E-05 39.5 20.2 141 164-324 122-275 (450)
249 3dr2_A Exported gluconolactona 95.1 1.5 5.3E-05 38.0 17.3 210 125-366 67-304 (305)
250 3k26_A Polycomb protein EED; W 95.0 1.7 5.9E-05 38.2 26.1 135 126-274 45-194 (366)
251 1npe_A Nidogen, entactin; glyc 95.0 1.5 5.1E-05 37.2 27.0 177 125-324 58-242 (267)
252 3azo_A Aminopeptidase; POP fam 94.9 3.1 0.0001 40.6 22.6 197 166-375 101-332 (662)
253 2ghs_A AGR_C_1268P; regucalcin 94.8 1.9 6.5E-05 37.9 22.2 200 125-351 71-292 (326)
254 3iz6_a 40S ribosomal protein R 94.8 2.2 7.4E-05 38.4 21.2 147 200-372 171-333 (380)
255 4aow_A Guanine nucleotide-bind 94.8 1.9 6.4E-05 37.6 23.0 179 164-370 105-288 (340)
256 4gga_A P55CDC, cell division c 94.8 2.4 8.1E-05 38.7 21.1 141 160-321 118-262 (420)
257 3mmy_A MRNA export factor; mRN 94.7 0.93 3.2E-05 40.0 15.1 136 164-322 61-201 (368)
258 1flg_A Protein (quinoprotein e 94.6 3.5 0.00012 39.8 24.8 116 152-277 64-200 (582)
259 1yfq_A Cell cycle arrest prote 94.6 2.1 7.2E-05 37.3 21.4 212 112-351 71-312 (342)
260 3m0c_C LDL receptor, low-densi 94.6 4.3 0.00015 40.8 25.0 199 164-395 401-617 (791)
261 3gre_A Serine/threonine-protei 94.4 3 0.0001 38.1 21.3 149 198-370 181-361 (437)
262 4gga_A P55CDC, cell division c 94.3 3.1 0.0001 37.9 22.7 244 125-398 125-382 (420)
263 3lrv_A PRE-mRNA-splicing facto 94.3 2.4 8.4E-05 37.3 16.7 65 294-371 138-204 (343)
264 3lp9_A LS-24; SEED albumin, pl 94.2 0.6 2.1E-05 38.9 11.4 102 243-369 70-202 (227)
265 3k26_A Polycomb protein EED; W 94.2 2.7 9.4E-05 36.9 22.2 102 111-225 86-194 (366)
266 3dm0_A Maltose-binding peripla 94.0 5 0.00017 39.4 24.2 178 164-371 449-635 (694)
267 1qhu_A Protein (hemopexin); be 94.0 1.9 6.5E-05 40.0 15.4 134 198-368 158-331 (460)
268 1pex_A Collagenase-3, MMP-13; 93.7 2.4 8.1E-05 34.7 19.4 145 150-324 27-196 (207)
269 1k32_A Tricorn protease; prote 93.7 7.7 0.00026 40.3 24.0 226 125-374 226-467 (1045)
270 2p9w_A MAL S 1 allergenic prot 93.7 3.5 0.00012 36.4 19.0 148 160-321 27-216 (334)
271 3f3f_A Nucleoporin SEH1; struc 93.6 3.2 0.00011 35.9 19.5 146 199-368 71-249 (351)
272 3frx_A Guanine nucleotide-bind 93.5 1.8 6.3E-05 37.8 14.1 143 198-370 76-229 (319)
273 3iz6_a 40S ribosomal protein R 93.2 4.4 0.00015 36.3 18.8 180 164-369 177-376 (380)
274 1flg_A Protein (quinoprotein e 93.2 1.5 5.3E-05 42.3 14.0 118 240-373 63-200 (582)
275 1nr0_A Actin interacting prote 93.2 6.5 0.00022 38.0 21.6 62 294-368 459-522 (611)
276 2oiz_A Aromatic amine dehydrog 93.1 4.6 0.00016 36.1 23.1 86 294-391 265-358 (361)
277 2oiz_A Aromatic amine dehydrog 93.0 4.8 0.00016 36.0 16.4 54 342-398 265-322 (361)
278 2mad_H Methylamine dehydrogena 92.9 5.1 0.00017 36.1 25.9 261 110-397 33-335 (373)
279 1k32_A Tricorn protease; prote 92.8 10 0.00036 39.3 20.8 114 156-279 347-468 (1045)
280 2ymu_A WD-40 repeat protein; u 92.8 6.8 0.00023 37.1 21.1 201 164-399 363-568 (577)
281 1n7d_A LDL receptor, low-densi 92.7 0.86 2.9E-05 45.2 11.7 197 167-395 386-599 (699)
282 1hv2_A Elongin C, ELC1; protei 92.7 0.12 4.1E-06 36.8 4.1 44 20-64 6-59 (99)
283 2fnj_C Transcription elongatio 92.7 0.093 3.2E-06 37.2 3.5 43 20-63 3-58 (96)
284 2xdw_A Prolyl endopeptidase; a 92.7 8.3 0.00028 38.0 25.6 237 124-374 97-375 (710)
285 4a0p_A LRP6, LRP-6, low-densit 92.7 7.9 0.00027 37.7 27.4 197 164-394 12-221 (628)
286 2xyi_A Probable histone-bindin 92.5 3.5 0.00012 37.7 15.1 143 201-368 196-353 (430)
287 2gop_A Trilobed protease; beta 92.5 5.1 0.00017 35.0 16.7 187 166-375 42-258 (347)
288 1su3_A Interstitial collagenas 92.4 4.9 0.00017 37.2 15.6 148 150-325 266-437 (450)
289 2qe8_A Uncharacterized protein 92.3 5.2 0.00018 35.3 15.4 77 198-278 77-161 (343)
290 3oyo_A Hemopexin fold protein 92.2 1.5 5E-05 36.5 10.7 99 197-319 69-197 (225)
291 2gop_A Trilobed protease; beta 92.1 5.7 0.00019 34.7 19.6 221 124-377 84-339 (347)
292 3tc9_A Hypothetical hydrolase; 92.0 4.3 0.00015 37.4 14.9 142 198-367 149-300 (430)
293 3sjl_D Methylamine dehydrogena 92.0 6.9 0.00024 35.4 16.9 109 110-226 45-172 (386)
294 3dm0_A Maltose-binding peripla 91.9 10 0.00035 37.2 22.6 104 200-324 532-636 (694)
295 1itv_A MMP9; adaptive molecula 91.8 4.4 0.00015 32.7 17.4 144 151-322 11-176 (195)
296 3frx_A Guanine nucleotide-bind 91.3 6.8 0.00023 34.0 19.7 219 111-368 78-317 (319)
297 2xzm_R RACK1; ribosome, transl 91.0 7.7 0.00026 34.0 18.7 141 111-271 89-243 (343)
298 3c75_H MADH, methylamine dehyd 91.0 9.5 0.00032 35.1 18.6 109 110-226 85-212 (426)
299 3lp9_A LS-24; SEED albumin, pl 90.9 1.3 4.5E-05 36.9 9.1 102 196-321 70-202 (227)
300 3tc9_A Hypothetical hydrolase; 90.8 3.2 0.00011 38.2 12.7 148 151-319 141-300 (430)
301 3s94_A LRP-6, low-density lipo 90.8 12 0.00043 36.2 23.8 189 148-369 41-244 (619)
302 4ggc_A P55CDC, cell division c 90.8 7.2 0.00025 33.3 22.4 247 125-398 45-302 (318)
303 4ggc_A P55CDC, cell division c 90.6 7.4 0.00025 33.2 19.8 143 160-322 38-183 (318)
304 4h5i_A Guanine nucleotide-exch 90.5 9 0.00031 34.1 17.4 139 214-370 157-302 (365)
305 2xzm_R RACK1; ribosome, transl 90.4 8.6 0.00029 33.7 21.1 135 164-319 95-243 (343)
306 1nr0_A Actin interacting prote 90.4 13 0.00045 35.8 24.8 139 125-277 212-360 (611)
307 3o4h_A Acylamino-acid-releasin 90.4 6.2 0.00021 37.7 14.9 151 200-372 76-231 (582)
308 3iuj_A Prolyl endopeptidase; h 90.2 15 0.00051 36.1 20.7 193 167-374 155-365 (693)
309 2cn3_A Xyloglucanase, beta-1,4 90.2 6 0.0002 39.4 14.8 128 222-375 554-694 (737)
310 2xyi_A Probable histone-bindin 89.9 2.6 9.1E-05 38.6 11.3 102 248-368 196-309 (430)
311 3sov_A LRP-6, low-density lipo 89.7 9.9 0.00034 33.3 24.0 195 166-395 12-223 (318)
312 1fwx_A Nitrous oxide reductase 89.4 10 0.00034 36.4 14.8 253 124-393 111-456 (595)
313 1sqj_A OXG-RCBH, oligoxylogluc 89.3 19 0.00065 36.1 28.7 229 135-379 4-280 (789)
314 2qe8_A Uncharacterized protein 88.7 12 0.00041 32.9 17.7 183 149-351 69-310 (343)
315 1gen_A Gelatinase A; hydrolase 87.8 10 0.00035 31.1 15.1 146 150-322 34-204 (218)
316 2p9w_A MAL S 1 allergenic prot 87.7 14 0.00048 32.6 20.1 205 125-351 35-304 (334)
317 3gre_A Serine/threonine-protei 87.6 16 0.00054 33.1 15.7 106 245-370 181-294 (437)
318 1hxn_A Hemopexin, HPX; heme, b 87.6 5.3 0.00018 32.9 10.3 97 244-368 27-144 (219)
319 2ymu_A WD-40 repeat protein; u 87.0 21 0.0007 33.7 22.4 175 164-370 322-500 (577)
320 2cn3_A Xyloglucanase, beta-1,4 86.8 26 0.0009 34.7 28.3 232 134-379 10-294 (737)
321 4h5i_A Guanine nucleotide-exch 86.6 17 0.00057 32.3 16.7 178 166-368 156-343 (365)
322 2hz6_A Endoplasmic reticulum t 86.5 0.36 1.2E-05 43.6 2.9 66 242-325 6-75 (369)
323 4hw6_A Hypothetical protein, I 85.8 18 0.00061 33.2 14.2 142 199-367 153-303 (433)
324 1ck7_A Protein (gelatinase A); 85.8 3.7 0.00013 39.8 9.5 144 193-369 448-616 (631)
325 1fwx_A Nitrous oxide reductase 85.5 6.9 0.00024 37.5 11.1 208 146-368 85-361 (595)
326 1hxn_A Hemopexin, HPX; heme, b 85.1 15 0.0005 30.2 15.0 136 197-368 27-197 (219)
327 3c7x_A Matrix metalloproteinas 84.6 14 0.00049 29.7 14.9 145 151-322 10-177 (196)
328 1xfd_A DIP, dipeptidyl aminope 84.2 32 0.0011 33.6 16.1 59 124-183 90-150 (723)
329 3a0f_A Xyloglucanase; beta-pro 83.5 38 0.0013 33.7 23.9 206 160-379 36-295 (763)
330 1yr2_A Prolyl oligopeptidase; 82.2 41 0.0014 33.2 26.1 234 124-374 132-401 (741)
331 2ece_A 462AA long hypothetical 82.1 32 0.0011 31.8 15.3 167 198-375 95-296 (462)
332 1jof_A Carboxy-CIS,CIS-muconat 82.1 26 0.00089 30.9 15.8 66 310-379 166-241 (365)
333 4hw6_A Hypothetical protein, I 80.8 34 0.0012 31.3 20.2 149 150-319 142-303 (433)
334 3ba0_A Macrophage metalloelast 78.3 37 0.0013 30.3 18.3 148 150-325 184-355 (365)
335 3s94_A LRP-6, low-density lipo 77.9 52 0.0018 31.8 30.6 186 150-370 352-553 (619)
336 3dw8_B Serine/threonine-protei 77.2 41 0.0014 30.2 18.5 27 342-374 353-379 (447)
337 3v7d_A Suppressor of kinetocho 77.1 4.9 0.00017 31.6 5.9 45 19-64 8-67 (169)
338 2ece_A 462AA long hypothetical 75.7 50 0.0017 30.5 22.8 211 157-378 95-363 (462)
339 2xe4_A Oligopeptidase B; hydro 75.2 68 0.0023 31.8 15.2 150 166-327 294-465 (751)
340 3dw8_B Serine/threonine-protei 74.8 43 0.0015 30.0 12.8 65 294-371 188-261 (447)
341 3vu4_A KMHSV2; beta-propeller 74.5 44 0.0015 29.3 24.6 180 110-321 71-272 (355)
342 2mad_H Methylamine dehydrogena 74.3 47 0.0016 29.6 26.8 86 294-390 278-371 (373)
343 1jof_A Carboxy-CIS,CIS-muconat 74.3 45 0.0015 29.3 17.8 162 214-389 167-364 (365)
344 3vu4_A KMHSV2; beta-propeller 73.3 47 0.0016 29.1 19.8 141 198-370 70-229 (355)
345 1vcb_B Protein (elongin C); tu 72.7 3.3 0.00011 30.0 3.5 44 20-64 19-75 (112)
346 1mda_H Methylamine dehydrogena 72.5 53 0.0018 29.3 15.4 70 312-390 295-366 (368)
347 1xfd_A DIP, dipeptidyl aminope 71.4 70 0.0024 31.1 14.1 62 311-374 228-295 (723)
348 2xe4_A Oligopeptidase B; hydro 71.4 83 0.0029 31.1 21.6 152 213-376 294-466 (751)
349 2oaj_A Protein SNI1; WD40 repe 70.6 96 0.0033 31.5 16.2 147 199-373 69-247 (902)
350 3drz_A BTB/POZ domain-containi 70.3 5.9 0.0002 28.3 4.4 71 20-90 8-96 (107)
351 1ck7_A Protein (gelatinase A); 69.8 36 0.0012 32.9 10.9 145 150-322 447-617 (631)
352 3ei3_A DNA damage-binding prot 65.4 1.2E+02 0.0042 31.8 14.7 124 262-398 863-987 (1158)
353 2oaj_A Protein SNI1; WD40 repe 65.1 1.2E+02 0.0042 30.7 22.0 186 111-325 30-247 (902)
354 3ei3_A DNA damage-binding prot 63.6 1.5E+02 0.0051 31.1 17.4 117 213-344 863-981 (1158)
355 2oit_A Nucleoporin 214KDA; NH2 63.5 87 0.003 28.4 15.1 61 246-321 162-224 (434)
356 3kya_A Putative phosphatase; s 62.0 65 0.0022 30.1 10.8 106 245-367 151-277 (496)
357 2j04_A TAU60, YPL007P, hypothe 61.5 1.2E+02 0.0039 29.1 17.4 148 198-374 96-260 (588)
358 2be1_A Serine/threonine-protei 59.1 30 0.001 30.6 7.7 57 264-325 21-81 (339)
359 1z68_A Fibroblast activation p 56.4 1.5E+02 0.0051 28.8 18.8 152 215-374 225-401 (719)
360 2be1_A Serine/threonine-protei 54.0 72 0.0025 28.1 9.3 102 215-328 21-140 (339)
361 4hvt_A Ritya.17583.B, post-pro 53.4 1.5E+02 0.005 29.2 12.3 149 167-330 269-439 (711)
362 3qqz_A Putative uncharacterize 52.4 1E+02 0.0035 25.8 24.8 191 151-368 31-253 (255)
363 3ju4_A Endo-N-acetylneuraminid 51.7 1.4E+02 0.0048 27.1 13.0 126 223-351 269-406 (670)
364 1sqj_A OXG-RCBH, oligoxylogluc 51.7 1.9E+02 0.0066 28.7 27.5 234 127-375 39-340 (789)
365 3kya_A Putative phosphatase; s 51.3 1.6E+02 0.0054 27.5 19.7 112 150-271 142-277 (496)
366 3sjl_D Methylamine dehydrogena 50.5 1.4E+02 0.0048 26.8 23.1 71 294-372 291-367 (386)
367 3ju4_A Endo-N-acetylneuraminid 49.1 1.5E+02 0.0053 26.8 12.7 124 177-302 270-405 (670)
368 2b4w_A Hypothetical protein, c 45.6 94 0.0032 26.4 7.9 60 291-351 37-98 (315)
369 3k6s_A Integrin alpha-X; cell 42.6 1.5E+02 0.005 31.0 10.7 148 237-390 335-510 (1095)
370 2b4w_A Hypothetical protein, c 40.1 96 0.0033 26.4 7.1 57 197-254 39-98 (315)
371 3c75_H MADH, methylamine dehyd 38.8 2.3E+02 0.0077 25.8 19.5 80 294-384 330-417 (426)
372 3kvt_A Potassium channel prote 35.7 46 0.0016 24.0 4.2 70 20-90 7-92 (115)
373 1u9d_A Hypothetical protein VC 33.7 20 0.00069 26.2 2.0 22 41-62 9-32 (122)
374 3a0f_A Xyloglucanase; beta-pro 30.7 4E+02 0.014 26.3 26.5 231 127-374 45-351 (763)
375 3amr_A 3-phytase; beta-propell 30.2 2.9E+02 0.0098 24.4 16.6 115 263-389 99-237 (355)
376 3amr_A 3-phytase; beta-propell 30.1 2.9E+02 0.0099 24.4 11.1 83 311-398 99-197 (355)
377 1s1g_A Potassium voltage-gated 29.2 86 0.0029 22.9 4.8 70 20-90 15-99 (124)
378 1mda_H Methylamine dehydrogena 28.1 86 0.003 27.9 5.6 95 295-397 32-140 (368)
379 2eqx_A Kelch repeat and BTB do 25.7 1.8 6.3E-05 30.9 -4.9 39 2-43 34-79 (105)
380 1t1d_A Protein (potassium chan 24.7 60 0.0021 22.7 3.1 69 20-89 3-88 (100)
381 3sre_A PON1, serum paraoxonase 22.9 3.9E+02 0.013 23.5 17.3 140 214-368 83-252 (355)
382 4hvt_A Ritya.17583.B, post-pro 22.9 5.4E+02 0.019 25.2 15.9 151 214-378 269-439 (711)
383 3f6k_A Sortilin; protein sorti 21.7 3.8E+02 0.013 26.1 9.1 107 263-376 65-177 (685)
384 1nn7_A Potassium channel KV4.2 21.0 2.2E+02 0.0075 19.9 5.9 70 20-90 2-86 (105)
385 3drx_A BTB/POZ domain-containi 20.3 1E+02 0.0034 24.8 3.9 77 15-91 8-103 (202)
No 1
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.7e-52 Score=378.99 Aligned_cols=288 Identities=30% Similarity=0.535 Sum_probs=256.9
Q ss_pred CCcCcCCCCCCCcEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE------eecCEEEE
Q psy2979 98 PRTKPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL------DIVDIVYV 171 (400)
Q Consensus 98 ~~~~~r~~~~~~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~------~~~~~~~~ 171 (400)
.+.+||....+.+.++++||.+. ...+++++||+.+++|..++.+|.+|..|+++++++. ||++ ...++++.
T Consensus 4 ~~~~~r~~~~~~~~i~v~GG~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~ 81 (302)
T 2xn4_A 4 VRTRLRTPMNLPKLMVVVGGQAP-KAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGL-VFAVGGFNGSLRVRTVDS 81 (302)
T ss_dssp -----------CEEEEEECCBSS-SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTE-EEEESCBCSSSBCCCEEE
T ss_pred CcccCCcccCCCCEEEEECCCCC-CCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCE-EEEEeCcCCCccccceEE
Confidence 34567877767789999999863 5678899999999999999999999999999999999 9999 34578999
Q ss_pred EECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEE
Q psy2979 172 AASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVT 251 (400)
Q Consensus 172 yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~ 251 (400)
||+.+++|+.+++||.+|..++++.++++||++||.++....+++++||+.+++|+.++++|.+|..|++++++++||++
T Consensus 82 ~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 161 (302)
T 2xn4_A 82 YDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAV 161 (302)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred ECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEE
Confidence 99999999999999999999999999999999999987777889999999999999999999999999999999999999
Q ss_pred cCccccCCCC---cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC
Q psy2979 252 GGAILEDGDG---IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP 328 (400)
Q Consensus 252 GG~~~~~~~~---~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 328 (400)
||. ++.. .+++++||+.+++|+.++++|.+|..|++++++++||++||.+.... .+++++||+.+++|+.+++
T Consensus 162 GG~---~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~yd~~~~~W~~~~~ 237 (302)
T 2xn4_A 162 GGY---DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLV-RKSVEVYDPTTNAWRQVAD 237 (302)
T ss_dssp CCE---ETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSB-CCCEEEEETTTTEEEEECC
T ss_pred eCC---CCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcc-cceEEEEeCCCCCEeeCCC
Confidence 998 4432 77899999999999999999999999999999999999999877655 7899999999999999999
Q ss_pred CcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec-CCCCCCCceeeEEEccc
Q psy2979 329 MKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS-HLPSARSWLGCVPLQIH 392 (400)
Q Consensus 329 ~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~~ 392 (400)
+|.+|..+++++++++||++||. +.....+++++||+++++|+.++ .||.+|..|++++++++
T Consensus 238 ~~~~r~~~~~~~~~~~i~v~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~ 301 (302)
T 2xn4_A 238 MNMCRRNAGVCAVNGLLYVVGGD-DGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKR 301 (302)
T ss_dssp CSSCCBSCEEEEETTEEEEECCB-CSSSBCCCEEEEETTTTEEEECSSCCSSCCBSCEEEEEEC-
T ss_pred CCCccccCeEEEECCEEEEECCc-CCCcccccEEEEcCCCCeEEECCcccCcccccceEEEeccc
Confidence 99999999999999999999998 66566789999999999999997 89999999999999875
No 2
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=4e-51 Score=370.88 Aligned_cols=279 Identities=32% Similarity=0.595 Sum_probs=257.9
Q ss_pred CCCCCCcEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE--e--------ecCEEEEEE
Q psy2979 104 KSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL--D--------IVDIVYVAA 173 (400)
Q Consensus 104 ~~~~~~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~--~--------~~~~~~~yd 173 (400)
.+....+.|+++||. .....++++.||+.+++|..++++|.+|..|+++++++. ||++ . ..+.++.||
T Consensus 19 ~~~~~~~~i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 19 HAPKVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGL-LYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp --CCCCCCEEEECCB-SSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTE-EEEECCEEEETTEEEECCCEEEEE
T ss_pred cccCCCCEEEEEeCc-CCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCE-EEEECCCcCCCCCCeecceEEEEC
Confidence 444456899999998 467788999999999999999999999999999999999 9999 1 246799999
Q ss_pred CCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcC
Q psy2979 174 SMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGG 253 (400)
Q Consensus 174 ~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG 253 (400)
+.+++|+.+++||.+|..++++.++++||++||.++....+++++||+.+++|+.++++|.+|..|++++++++||++||
T Consensus 97 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 176 (308)
T 1zgk_A 97 PMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176 (308)
T ss_dssp TTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred CCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999998777788999999999999999999999999999999999999999
Q ss_pred ccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCc
Q psy2979 254 AILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEK 332 (400)
Q Consensus 254 ~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 332 (400)
. ++.. .+++++||+.+++|+.++++|.+|..|++++++++||++||.+.... .+++++||+.+++|+.++++|.+
T Consensus 177 ~---~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~~~~W~~~~~~p~~ 252 (308)
T 1zgk_A 177 F---DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ-LNSVERYDVETETWTFVAPMKHR 252 (308)
T ss_dssp B---CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSB-CCCEEEEETTTTEEEECCCCSSC
T ss_pred C---CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCc-cceEEEEeCCCCcEEECCCCCCC
Confidence 8 6555 78999999999999999999999999999999999999999887665 78999999999999999999999
Q ss_pred cCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEE
Q psy2979 333 RYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPL 389 (400)
Q Consensus 333 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 389 (400)
|..+++++++++||++||. +.....+++++||+++++|+.++.||.+|..|++|++
T Consensus 253 r~~~~~~~~~~~i~v~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~l 308 (308)
T 1zgk_A 253 RSALGITVHQGRIYVLGGY-DGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAVT 308 (308)
T ss_dssp CBSCEEEEETTEEEEECCB-CSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEC
T ss_pred ccceEEEEECCEEEEEcCc-CCCcccceEEEEcCCCCEEeecCCCCCCcccceeEeC
Confidence 9999999999999999998 6666788999999999999999999999999999975
No 3
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=2.6e-51 Score=371.83 Aligned_cols=285 Identities=23% Similarity=0.332 Sum_probs=256.3
Q ss_pred cCcCCCCCCCcEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE-----eecCEEEEEEC
Q psy2979 100 TKPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL-----DIVDIVYVAAS 174 (400)
Q Consensus 100 ~~~r~~~~~~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~-----~~~~~~~~yd~ 174 (400)
.+||.+.. +.++++||.+. .++++.||+.+++|..++++|.+|..|+++++++. ||++ ...++++.||+
T Consensus 4 ~~pr~~~~--~~l~~~GG~~~---~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~d~ 77 (306)
T 3ii7_A 4 TRPRRKKH--DYRIALFGGSQ---PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNV-VYILGGSQLFPIKRMDCYNV 77 (306)
T ss_dssp ------CC--CEEEEEECCSS---TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTE-EEEECCBSSSBCCEEEEEET
T ss_pred ccCCcccc--ceEEEEeCCCC---CceEEEecCCCCCEecCCCCCcccceeEEEEECCE-EEEEeCCCCCCcceEEEEeC
Confidence 34665554 89999999764 78999999999999999999999999999999999 9999 35678999999
Q ss_pred CCCCeEEccCCCCcceeeeEEEECCEEEEEcccC-CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcC
Q psy2979 175 MHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWD-GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGG 253 (400)
Q Consensus 175 ~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG 253 (400)
.+++|..++++|.+|..++++.++++||++||.+ +....+++++||+.+++|+.++++|.+|..|+++.++++||++||
T Consensus 78 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 157 (306)
T 3ii7_A 78 VKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGG 157 (306)
T ss_dssp TTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred CCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECC
Confidence 9999999999999999999999999999999987 556788999999999999999999999999999999999999999
Q ss_pred ccccCCC-C-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcC
Q psy2979 254 AILEDGD-G-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKE 331 (400)
Q Consensus 254 ~~~~~~~-~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 331 (400)
....... . .+++++||+.+++|+.++++|.+|..|+++.++++||++||.+.... .+++++||+.+++|+.++++|.
T Consensus 158 ~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~-~~~~~~yd~~~~~W~~~~~~p~ 236 (306)
T 3ii7_A 158 SLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGG-LDNVEYYDIKLNEWKMVSPMPW 236 (306)
T ss_dssp EESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEE-BCCEEEEETTTTEEEECCCCSC
T ss_pred CCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCC-CceEEEeeCCCCcEEECCCCCC
Confidence 8321111 1 68899999999999999999999999999999999999999877655 7899999999999999999999
Q ss_pred ccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEccc
Q psy2979 332 KRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIH 392 (400)
Q Consensus 332 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~ 392 (400)
+|..+++++++++|||+||. +.....+++++||+++++|+.++.||.+|..|+++++.+.
T Consensus 237 ~r~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~ 296 (306)
T 3ii7_A 237 KGVTVKCAAVGSIVYVLAGF-QGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLICVVDT 296 (306)
T ss_dssp CBSCCEEEEETTEEEEEECB-CSSSBCCEEEEEETTTTEEEEEEEEECCSCTTCEEEEEEC
T ss_pred CccceeEEEECCEEEEEeCc-CCCeeeeeEEEEcCCCCeEEeCCCcccccceeEEEEECCc
Confidence 99999999999999999998 6666788999999999999999999999999999998764
No 4
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.1e-51 Score=371.68 Aligned_cols=288 Identities=30% Similarity=0.564 Sum_probs=258.8
Q ss_pred CCCCcCcCCCCCCCcEEEEEec-cCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE------eecCE
Q psy2979 96 ITPRTKPRKSAGSINVIIAVGG-EDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL------DIVDI 168 (400)
Q Consensus 96 ~~~~~~~r~~~~~~~~i~~~gg-~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~------~~~~~ 168 (400)
++.+.+||.. ..+.++++|| .+.....++++.||+.+++|..++.+|.+|..|+++..++. ||++ ...+.
T Consensus 3 ~~~~~~pr~~--~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-l~v~GG~~~~~~~~~ 79 (301)
T 2vpj_A 3 QGPRTRARLG--ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDR-IYVIGGYDGRSRLSS 79 (301)
T ss_dssp ------------CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTE-EEEECCBCSSCBCCC
T ss_pred CCcccccccc--CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCE-EEEEcCCCCCccCce
Confidence 3445667744 4589999999 55567788999999999999999999999999999999999 9999 34578
Q ss_pred EEEEECCCCC---eEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeC
Q psy2979 169 VYVAASMHKI---LHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE 245 (400)
Q Consensus 169 ~~~yd~~~~~---w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~ 245 (400)
++.||+.+++ |+.++++|.+|..++++.++++||++||..+....+++++||+.+++|+.++++|.+|..|++++++
T Consensus 80 ~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~ 159 (301)
T 2vpj_A 80 VECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVAS 159 (301)
T ss_dssp EEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEET
T ss_pred EEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEEC
Confidence 9999999999 9999999999999999999999999999987777889999999999999999999999999999999
Q ss_pred CEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 246 GMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
++||++||. ++.. .+++++||+.+++|+.++++|.+|..|+++.++++||++||.+.... .+++++||+.+++|+
T Consensus 160 ~~iyv~GG~---~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~-~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 160 GVIYCLGGY---DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAH-LSSVEAYNIRTDSWT 235 (301)
T ss_dssp TEEEEECCB---CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSB-CCCEEEEETTTTEEE
T ss_pred CEEEEECCC---CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcc-cceEEEEeCCCCcEE
Confidence 999999998 6655 78999999999999999999999999999999999999999887665 789999999999999
Q ss_pred EccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcc
Q psy2979 325 YKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQI 391 (400)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 391 (400)
.++++|.+|..+++++++++||++||. +.....+++++||+++++|+.++.||.+|..|+++++++
T Consensus 236 ~~~~~p~~r~~~~~~~~~~~i~v~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 301 (301)
T 2vpj_A 236 TVTSMTTPRCYVGATVLRGRLYAIAGY-DGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLRE 301 (301)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEECCB-CSSSBEEEEEEEETTTTEEEEEEEEEEEEESCEEEEEEC
T ss_pred ECCCCCCcccceeEEEECCEEEEEcCc-CCCcccccEEEEcCCCCeEEEcCCCCcccccceEEEeCC
Confidence 999999999999999999999999998 655567899999999999999999999999999999863
No 5
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=4e-49 Score=358.91 Aligned_cols=277 Identities=21% Similarity=0.312 Sum_probs=247.1
Q ss_pred CCcEEEEEeccCCCcccceEEEEEcCCCceEEccCC--cccceeeeEEEECCeEEEEEee------------cCEEEEEE
Q psy2979 108 SINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCL--PFAISKHGLVVSGRNTIYCLDI------------VDIVYVAA 173 (400)
Q Consensus 108 ~~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~--~~~~~~~~~~~~~~~~iyv~~~------------~~~~~~yd 173 (400)
+++.++++|| ++++.||+.+++|.. +++ |.+|..|++++.++. ||++.. .+.++.||
T Consensus 3 ~~~~l~~~GG-------~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d 73 (315)
T 4asc_A 3 LQDLIFMISE-------EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQ-VFVAGGLFYNEDNKEDPMSAYFLQFD 73 (315)
T ss_dssp CEEEEEEEET-------TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCC-EEEEEEEEECSSCSSSCEEEEEEEEE
T ss_pred cceEEEEEcC-------CceEEECCCCCeEec-CCCCCCCCccceEEEEECCE-EEEEcCcccCCCCCccccccceEEec
Confidence 3578999999 579999999999987 655 458999999999999 999922 23489999
Q ss_pred CCCCCeEEccCCCCcceeeeEEEECCEEEEEcccC---CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEE
Q psy2979 174 SMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWD---GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYV 250 (400)
Q Consensus 174 ~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv 250 (400)
+.+++|+.++++|.+|..|+++.++++||++||.+ +....+++++||+.+++|+.++++|.+|..|++++++++||+
T Consensus 74 ~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 153 (315)
T 4asc_A 74 HLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYV 153 (315)
T ss_dssp TTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred CCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEE
Confidence 99999999999999999999999999999999975 356788999999999999999999999999999999999999
Q ss_pred EcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCC
Q psy2979 251 TGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPM 329 (400)
Q Consensus 251 ~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 329 (400)
+||.. ++.. .+++++||+.+++|+.++++|.+|..|++++++++||++||.+.... .+++++||+.+++|+.++++
T Consensus 154 ~GG~~--~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~yd~~~~~W~~~~~~ 230 (315)
T 4asc_A 154 IGGKG--SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGL-TSSAEVYSITDNKWAPFEAF 230 (315)
T ss_dssp ECCBC--TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSE-EEEEEEEETTTTEEEEECCC
T ss_pred EeCCC--CCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCc-cceEEEEECCCCeEEECCCC
Confidence 99983 2223 88999999999999999999999999999999999999999877665 78999999999999999999
Q ss_pred cCccCcceEEEECCEEEEEcCccC----CC----CCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEccccccccc
Q psy2979 330 KEKRYRPGIAVIDGKIYVLGGEEG----WD----GYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 330 ~~~~~~~~~~~~~~~lyv~GG~~~----~~----~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
|.+|..|++++++++||++||.+. .. ...+++++||+++++|+.+ +|.+|..+++++++++.++|-.
T Consensus 231 p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~~~l~v~~~ 305 (315)
T 4asc_A 231 PQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV--LREIAYAAGATFLPVRLNVLRL 305 (315)
T ss_dssp SSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE--ESCSSCCSSCEEEEEEECGGGS
T ss_pred CCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh--ccCCcCccceEEeCCEEEEEEe
Confidence 999999999999999999999821 11 2457899999999999999 6788999999999999998753
No 6
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=3.8e-49 Score=359.56 Aligned_cols=283 Identities=24% Similarity=0.396 Sum_probs=251.5
Q ss_pred cCcCCCCCCCcEEEEEeccCCCcccceEEEEEcCCCceEEcc-CCcccceeeeEEEECCeEEEEEee------------c
Q psy2979 100 TKPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLS-CLPFAISKHGLVVSGRNTIYCLDI------------V 166 (400)
Q Consensus 100 ~~~r~~~~~~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~-~~~~~~~~~~~~~~~~~~iyv~~~------------~ 166 (400)
.+||..+...+.++++||. .++.||+.+++|...+ +.|.+|..|+++..++. ||++.. .
T Consensus 6 ~~~r~~~~~~~~i~~~GG~-------~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~ 77 (318)
T 2woz_A 6 DIPRHGMFVKDLILLVNDT-------AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQ-VYVVGGLYVDEENKDQPLQ 77 (318)
T ss_dssp SSCCCCCSEEEEEEEECSS-------EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSC-EEEEESSCC-------CCC
T ss_pred ccccccceecchhhhcccc-------ceEEECCCCCceecccCCccCCccceEEEEECCE-EEEECCcccCccccCCCcc
Confidence 3578877777899999994 3799999999999843 22368889999999999 999921 1
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccC--CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWD--GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH 244 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~ 244 (400)
+.++.||+.+++|..+++||.+|..|+++.++++||++||.. +....+++++||+.+++|+.++++|.+|..|+++++
T Consensus 78 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 157 (318)
T 2woz_A 78 SYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH 157 (318)
T ss_dssp BEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE
T ss_pred ccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE
Confidence 238999999999999999999999999999999999999986 445678899999999999999999999999999999
Q ss_pred CCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 245 EGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+++||++||.. ++.. .+++++||+.+++|+.++++|.+|..|++++++++||++||.+.... .+++++||+.+++|
T Consensus 158 ~~~iyv~GG~~--~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~yd~~~~~W 234 (318)
T 2woz_A 158 NGMIYCLGGKT--DDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGL-SASVEAFDLKTNKW 234 (318)
T ss_dssp TTEEEEECCEE--SSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEE-EEEEEEEETTTCCE
T ss_pred CCEEEEEcCCC--CCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCc-cceEEEEECCCCeE
Confidence 99999999973 2223 78899999999999999999999999999999999999999876555 78999999999999
Q ss_pred EEccCCcCccCcceEEEECCEEEEEcCccCC---------CCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEccccc
Q psy2979 324 EYKSPMKEKRYRPGIAVIDGKIYVLGGEEGW---------DGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKS 394 (400)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~---------~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~ 394 (400)
+.++++|.+|..|++++++++||++||. .. ....+++++||+++++|+.+ +|.+|+.|++++++++.|
T Consensus 235 ~~~~~~p~~r~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~~~iy 311 (318)
T 2woz_A 235 EVMTEFPQERSSISLVSLAGSLYAIGGF-AMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--LKEIRYASGASCLATRLN 311 (318)
T ss_dssp EECCCCSSCCBSCEEEEETTEEEEECCB-CCBC----CCBCCBCCCEEEEETTTTEEEEE--ESCCGGGTTCEEEEEEEE
T ss_pred EECCCCCCcccceEEEEECCEEEEECCe-eccCCCCceeccceeeeEEEEeCCCCEehhh--cccccccccceeeCCEEE
Confidence 9999999999999999999999999998 43 13468999999999999999 899999999999999998
Q ss_pred cc
Q psy2979 395 QF 396 (400)
Q Consensus 395 ~~ 396 (400)
+|
T Consensus 312 i~ 313 (318)
T 2woz_A 312 LF 313 (318)
T ss_dssp GG
T ss_pred EE
Confidence 87
No 7
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=7.9e-45 Score=329.46 Aligned_cols=250 Identities=27% Similarity=0.478 Sum_probs=222.3
Q ss_pred CcccceeeeEEEECCeEEEEE-----eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEccc----CCCCCC
Q psy2979 143 LPFAISKHGLVVSGRNTIYCL-----DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGW----DGSCRL 213 (400)
Q Consensus 143 ~~~~~~~~~~~~~~~~~iyv~-----~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~----~~~~~~ 213 (400)
-|..|..|+.+.+++. ||++ ...+.++.||+.+++|..++++|.+|..++++.++++||++||. .+....
T Consensus 11 ~~~~~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 89 (308)
T 1zgk_A 11 SGLVPRGSHAPKVGRL-IYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDS 89 (308)
T ss_dssp ----------CCCCCC-EEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEEC
T ss_pred CCeeeCCccccCCCCE-EEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeec
Confidence 3567788888889999 9999 44678999999999999999999999999999999999999998 555567
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
+++++||+.+++|+.+++||.+|..|++++++++||++||. ++.. .+++++||+.+++|+.++++|.+|..|++++
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 166 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGS---HGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV 166 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCE---ETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCC---CCCcccccEEEECCCCCeEeECCCCCccccceEEEE
Confidence 89999999999999999999999999999999999999998 5555 7899999999999999999999999999999
Q ss_pred ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEE
Q psy2979 293 LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 293 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 372 (400)
++++||++||.+.... .+++++||+.+++|+.++++|.+|..+++++++++||++||. ......+++++||+++++|+
T Consensus 167 ~~~~iyv~GG~~~~~~-~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~-~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 167 LNRLLYAVGGFDGTNR-LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGY-DGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp ETTEEEEECCBCSSCB-CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB-CSSSBCCCEEEEETTTTEEE
T ss_pred ECCEEEEEeCCCCCCc-CceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCC-CCCCccceEEEEeCCCCcEE
Confidence 9999999999887766 789999999999999999999999999999999999999998 66566889999999999999
Q ss_pred EecCCCCCCCceeeEEEccccccccc
Q psy2979 373 IMSHLPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 373 ~~~~~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
.+++||.+|..+++++++++.+++.|
T Consensus 245 ~~~~~p~~r~~~~~~~~~~~i~v~GG 270 (308)
T 1zgk_A 245 FVAPMKHRRSALGITVHQGRIYVLGG 270 (308)
T ss_dssp ECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred ECCCCCCCccceEEEEECCEEEEEcC
Confidence 99999999999999999987766643
No 8
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.3e-43 Score=320.66 Aligned_cols=241 Identities=26% Similarity=0.516 Sum_probs=218.0
Q ss_pred EEECCeEEEEE-----eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceE
Q psy2979 153 VVSGRNTIYCL-----DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWS 227 (400)
Q Consensus 153 ~~~~~~~iyv~-----~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 227 (400)
+.+++. ||++ ...+++++||+.+++|..++++|.+|..++++.++++||++||.++....+++++||+.+++|+
T Consensus 12 ~~~~~~-i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 12 MNLPKL-MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp ---CEE-EEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred cCCCCE-EEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCcee
Confidence 345666 8888 3457899999999999999999999999999999999999999987777889999999999999
Q ss_pred EccCCCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCC
Q psy2979 228 YIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHAS 306 (400)
Q Consensus 228 ~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~ 306 (400)
.++++|.+|..|++++++++||++||. ++.. .+++++||+.+++|+.++++|.+|..|++++++++||++||.+..
T Consensus 91 ~~~~~p~~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 167 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVLNGLLYAVGGF---DGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVA 167 (302)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEEEEE---CSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETT
T ss_pred eCCCCCccccceEEEEECCEEEEEcCC---CCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCC
Confidence 999999999999999999999999998 6555 889999999999999999999999999999999999999998654
Q ss_pred CC-CCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCcee
Q psy2979 307 TE-NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLG 385 (400)
Q Consensus 307 ~~-~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~ 385 (400)
.. ..+++++||+.+++|+.++++|.+|..|++++++++||++||. +.....+++++||+++++|+.++.||.+|..|+
T Consensus 168 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~ 246 (302)
T 2xn4_A 168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGH-DGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG 246 (302)
T ss_dssp TTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCB-SSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCC-CCCcccceEEEEeCCCCCEeeCCCCCCccccCe
Confidence 31 1678999999999999999999999999999999999999998 655667899999999999999999999999999
Q ss_pred eEEEccccccccc
Q psy2979 386 CVPLQIHKSQFVD 398 (400)
Q Consensus 386 ~~~~~~~~~~~~~ 398 (400)
+++++++.+++.|
T Consensus 247 ~~~~~~~i~v~GG 259 (302)
T 2xn4_A 247 VCAVNGLLYVVGG 259 (302)
T ss_dssp EEEETTEEEEECC
T ss_pred EEEECCEEEEECC
Confidence 9999887766543
No 9
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=5.7e-43 Score=317.01 Aligned_cols=234 Identities=22% Similarity=0.376 Sum_probs=214.2
Q ss_pred EEEE---eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc
Q psy2979 160 IYCL---DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV 236 (400)
Q Consensus 160 iyv~---~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~ 236 (400)
||++ ...++++.||+.+++|..++++|.+|..++++.++++||++||.+ ....+++++||+.+++|+.++++|.+|
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r 92 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGPPTPR 92 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEEEEECCSSCC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCCCCccc
Confidence 6776 337889999999999999999999999999999999999999988 667889999999999999999999999
Q ss_pred cccEEEEeCCEEEEEcCccccC-CCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCC---CC
Q psy2979 237 TSPAVVAHEGMLYVTGGAILED-GDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTEN---TN 311 (400)
Q Consensus 237 ~~~~~~~~~~~iyv~GG~~~~~-~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~---~~ 311 (400)
..|++++++++||++||. + +.. .+++++||+.+++|+.++++|.+|..|+++.++++||++||.+..... .+
T Consensus 93 ~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 93 DSLAACAAEGKIYTSGGS---EVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp BSCEEEEETTEEEEECCB---BTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECC
T ss_pred cceeEEEECCEEEEECCC---CCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccc
Confidence 999999999999999998 5 333 789999999999999999999999999999999999999997655432 67
Q ss_pred eEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcc
Q psy2979 312 RVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQI 391 (400)
Q Consensus 312 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 391 (400)
++++||+.+++|+.++++|.+|..|++++++++||++||. ......+++++||+++++|+.++.+|.+|..++++++++
T Consensus 170 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 248 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQ-NGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGS 248 (306)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCE-ETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETT
T ss_pred eEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCC-CCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECC
Confidence 8999999999999999999999999999999999999998 555567899999999999999999999999999999988
Q ss_pred ccccccc
Q psy2979 392 HKSQFVD 398 (400)
Q Consensus 392 ~~~~~~~ 398 (400)
+.+++.|
T Consensus 249 ~i~v~GG 255 (306)
T 3ii7_A 249 IVYVLAG 255 (306)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 7666543
No 10
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-42 Score=313.79 Aligned_cols=238 Identities=29% Similarity=0.524 Sum_probs=218.8
Q ss_pred ECCeEEEEE-------eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--
Q psy2979 155 SGRNTIYCL-------DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE-- 225 (400)
Q Consensus 155 ~~~~~iyv~-------~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-- 225 (400)
.++. ||++ ...++++.||+.+++|..++++|.+|..++++..+++||++||.++....+++++||+.+++
T Consensus 13 ~~~~-i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 13 ANEV-LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CCEE-EEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCCE-EEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 4555 7777 34578999999999999999999999999999999999999999877778899999999999
Q ss_pred -eEEccCCCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCc
Q psy2979 226 -WSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGW 303 (400)
Q Consensus 226 -W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 303 (400)
|+.++++|.+|..|+++.++++||++||. ++.. .+++++||+.+++|+.++++|.+|..|++++++++||++||.
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~---~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 168 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGF---DGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY 168 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEETTEEEEECCB---CSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCB
T ss_pred eeEECCCCCCCccceeEEEECCEEEEEccc---CCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCC
Confidence 99999999999999999999999999998 6555 789999999999999999999999999999999999999998
Q ss_pred CCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCc
Q psy2979 304 HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSW 383 (400)
Q Consensus 304 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~ 383 (400)
+.... .+++++||+.+++|+.++++|.+|..|++++++++||++||. +.....+++++||+++++|+.++.+|.+|..
T Consensus 169 ~~~~~-~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 246 (301)
T 2vpj_A 169 DGLNI-LNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGF-DGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY 246 (301)
T ss_dssp CSSCB-CCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCB-CSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred CCCcc-cceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCC-CCCcccceEEEEeCCCCcEEECCCCCCcccc
Confidence 77665 789999999999999999999999999999999999999998 6555678999999999999999999999999
Q ss_pred eeeEEEccccccccc
Q psy2979 384 LGCVPLQIHKSQFVD 398 (400)
Q Consensus 384 ~~~~~~~~~~~~~~~ 398 (400)
|++++++++.+++.|
T Consensus 247 ~~~~~~~~~i~v~GG 261 (301)
T 2vpj_A 247 VGATVLRGRLYAIAG 261 (301)
T ss_dssp CEEEEETTEEEEECC
T ss_pred eeEEEECCEEEEEcC
Confidence 999999887666543
No 11
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=3e-42 Score=319.17 Aligned_cols=256 Identities=17% Similarity=0.234 Sum_probs=215.0
Q ss_pred EccCCcccceeeeEEEECCeEEEEE--eecCEEEEEECC--CCCeEEccCCC-CcceeeeEEEECCEEEEEccc-C----
Q psy2979 139 TLSCLPFAISKHGLVVSGRNTIYCL--DIVDIVYVAASM--HKILHSLGSLK-FDFDVSGIAMLDGFVYAVGGW-D---- 208 (400)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~iyv~--~~~~~~~~yd~~--~~~w~~~~~~~-~~r~~~~~~~~~~~iyv~GG~-~---- 208 (400)
.++++|.+|..|+++++++. ||++ ...+++++||+. +++|..+++|| .+|..++++.++++||++||. .
T Consensus 2 ~l~~lP~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~ 80 (357)
T 2uvk_A 2 VLPETPVPFKSGTGAIDNDT-VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEG 80 (357)
T ss_dssp CSCCCSSCCCSCEEEEETTE-EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTS
T ss_pred CCCCCCccccceEEEEECCE-EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCc
Confidence 46889999999999888999 9999 445689999998 49999999999 899999999999999999998 3
Q ss_pred CCCCCCeEEEEeCCCCceEEccCCC-CcccccEEEEeCCEEEEEcCccccCCC---------------------------
Q psy2979 209 GSCRLDSVERYDPTKNEWSYIEPMK-LAVTSPAVVAHEGMLYVTGGAILEDGD--------------------------- 260 (400)
Q Consensus 209 ~~~~~~~v~~yd~~~~~W~~~~~l~-~~~~~~~~~~~~~~iyv~GG~~~~~~~--------------------------- 260 (400)
....++++++||+.+++|+.+++|+ .+|..|++++++++||++||. ++.
T Consensus 81 ~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (357)
T 2uvk_A 81 LTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGV---NQNIFNGYFEDLNEAGKDSTAIDKINAHYF 157 (357)
T ss_dssp CEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECC---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCc---CCCcCcccccchhhcCCcccchhhhhhhhc
Confidence 1245789999999999999999998 999999999999999999997 321
Q ss_pred -------C-cceEEEEeCCCCceeeccCCCCCcee-eeEEEECCeEEEEcCcCCCCCCCCeEEEEEC--CCCeEEEccCC
Q psy2979 261 -------G-IEQVQRYNPKVNQWQDLAPMLIPRSG-AAICALDSCIYVLGGWHASTENTNRVECYHI--AENTWEYKSPM 329 (400)
Q Consensus 261 -------~-~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~--~~~~W~~~~~~ 329 (400)
. ++.+++||+.+++|+.++++|.++.. +++++++++||++||.+........+++||+ .+++|+.++++
T Consensus 158 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~ 237 (357)
T 2uvk_A 158 DKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV 237 (357)
T ss_dssp SSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS
T ss_pred cccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC
Confidence 1 47999999999999999999977555 9999999999999997654322678999976 99999999998
Q ss_pred cCcc--CcceEEEECCEEEEEcCccCC----------------CCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcc
Q psy2979 330 KEKR--YRPGIAVIDGKIYVLGGEEGW----------------DGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQI 391 (400)
Q Consensus 330 ~~~~--~~~~~~~~~~~lyv~GG~~~~----------------~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 391 (400)
|.++ ..+++++++++|||+||.... .....++++||+++++|+.++.||.+|..|+++++++
T Consensus 238 ~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 317 (357)
T 2uvk_A 238 SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNN 317 (357)
T ss_dssp STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETT
T ss_pred CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCC
Confidence 7664 467789999999999996211 1223689999999999999999999999999999999
Q ss_pred ccccccc
Q psy2979 392 HKSQFVD 398 (400)
Q Consensus 392 ~~~~~~~ 398 (400)
+.++|.|
T Consensus 318 ~i~v~GG 324 (357)
T 2uvk_A 318 SLLIIGG 324 (357)
T ss_dssp EEEEEEE
T ss_pred EEEEEee
Confidence 8777654
No 12
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=9.1e-42 Score=310.36 Aligned_cols=236 Identities=21% Similarity=0.323 Sum_probs=206.3
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCC--CCcceeeeEEEECCEEEEEcccC----C--CCCCCeEEEEeCCCCceEEccC
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSL--KFDFDVSGIAMLDGFVYAVGGWD----G--SCRLDSVERYDPTKNEWSYIEP 231 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~--~~~r~~~~~~~~~~~iyv~GG~~----~--~~~~~~v~~yd~~~~~W~~~~~ 231 (400)
||++.. +.++.|||.+++|.. +++ |.+|..++++.++++||++||.. . ....+++++||+.+++|+.+++
T Consensus 7 l~~~GG-~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE-EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET-TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC-CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 555533 789999999999987 666 45899999999999999999962 1 1234559999999999999999
Q ss_pred CCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCC
Q psy2979 232 MKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENT 310 (400)
Q Consensus 232 l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 310 (400)
+|.+|..|++++++++||++||....++.. .+++++||+.+++|+.++++|.+|..|++++++++||++||........
T Consensus 85 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 164 (315)
T 4asc_A 85 LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164 (315)
T ss_dssp BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBC
T ss_pred CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCccc
Confidence 999999999999999999999973212233 8899999999999999999999999999999999999999984433337
Q ss_pred CeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEc
Q psy2979 311 NRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 390 (400)
Q Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 390 (400)
+++++||+.+++|+.++++|.+|..|++++++++||++||. ......+++++||+++++|+.++++|.+|..|++++++
T Consensus 165 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 243 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGV-TDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLV 243 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEE-CSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred ceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEecc-CCCCccceEEEEECCCCeEEECCCCCCcccceeEEEEC
Confidence 89999999999999999999999999999999999999998 65566789999999999999999999999999999999
Q ss_pred cccccccc
Q psy2979 391 IHKSQFVD 398 (400)
Q Consensus 391 ~~~~~~~~ 398 (400)
++.|++.|
T Consensus 244 ~~l~v~GG 251 (315)
T 4asc_A 244 GTLYAIGG 251 (315)
T ss_dssp TEEEEEEE
T ss_pred CEEEEECC
Confidence 97776643
No 13
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=1.7e-41 Score=314.16 Aligned_cols=264 Identities=15% Similarity=0.196 Sum_probs=217.9
Q ss_pred CcEEEEEeccCCCcccceEEEEEcC--CCceEEccCCc-ccceeeeEEEECCeEEEEE--e---------ecCEEEEEEC
Q psy2979 109 INVIIAVGGEDDKVVLRSVEGFCVK--TKVWKTLSCLP-FAISKHGLVVSGRNTIYCL--D---------IVDIVYVAAS 174 (400)
Q Consensus 109 ~~~i~~~gg~~~~~~~~~~~~yd~~--~~~w~~~~~~~-~~~~~~~~~~~~~~~iyv~--~---------~~~~~~~yd~ 174 (400)
.+.|+++||.+. ++++.||+. +++|..++++| .+|..|+++++++. ||++ . ..+++++||+
T Consensus 19 ~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~v~~yd~ 93 (357)
T 2uvk_A 19 NDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGN-LYVFGGIGKNSEGLTQVFNDVHKYNP 93 (357)
T ss_dssp TTEEEEECGGGT----TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTE-EEEECCEEECTTSCEEECCCEEEEET
T ss_pred CCEEEEEeCcCC----CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCE-EEEEcCCCCCCCccceeeccEEEEeC
Confidence 588999999763 479999998 48999999999 89999999999999 9999 2 1467999999
Q ss_pred CCCCeEEccCCC-CcceeeeEEEECCEEEEEcccCCC----------------------------------CCCCeEEEE
Q psy2979 175 MHKILHSLGSLK-FDFDVSGIAMLDGFVYAVGGWDGS----------------------------------CRLDSVERY 219 (400)
Q Consensus 175 ~~~~w~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~----------------------------------~~~~~v~~y 219 (400)
.+++|+.+++|+ .+|..++++..+++||++||.+.. ..++++++|
T Consensus 94 ~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 173 (357)
T 2uvk_A 94 KTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173 (357)
T ss_dssp TTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred CCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence 999999999998 899999999999999999998643 246899999
Q ss_pred eCCCCceEEccCCCCcccc-cEEEEeCCEEEEEcCccccCCCC--cceEEEEeC--CCCceeeccCCCCC--ceeeeEEE
Q psy2979 220 DPTKNEWSYIEPMKLAVTS-PAVVAHEGMLYVTGGAILEDGDG--IEQVQRYNP--KVNQWQDLAPMLIP--RSGAAICA 292 (400)
Q Consensus 220 d~~~~~W~~~~~l~~~~~~-~~~~~~~~~iyv~GG~~~~~~~~--~~~v~~yd~--~~~~W~~~~~~~~~--r~~~~~~~ 292 (400)
|+.+++|+.++++|.++.. +++++++++||++||. ++.. .+.+++||+ .+++|+.+++++.+ |..|++++
T Consensus 174 d~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~---~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~ 250 (357)
T 2uvk_A 174 DPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGE---AKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGI 250 (357)
T ss_dssp ETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCE---EETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEE
T ss_pred eCCCCcEEECCCCCCCCcccccEEEECCEEEEEeee---cCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEE
Confidence 9999999999999977655 9999999999999998 4333 678999976 99999999988766 45777999
Q ss_pred ECCeEEEEcCcCCCC----------------CCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCC
Q psy2979 293 LDSCIYVLGGWHAST----------------ENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG 356 (400)
Q Consensus 293 ~~~~iyv~GG~~~~~----------------~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~ 356 (400)
++++||++||.+... ....++++||+.+++|+.++++|.+|..|++++++++|||+||.+....
T Consensus 251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGK 330 (357)
T ss_dssp ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGC
T ss_pred ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCC
Confidence 999999999964321 1136899999999999999999999999999999999999999833333
Q ss_pred CCCeEEEEECCCCcEEEecCCCCC
Q psy2979 357 YHDSIECYDVDNDSWEIMSHLPSA 380 (400)
Q Consensus 357 ~~~~v~~yd~~~~~W~~~~~~~~~ 380 (400)
..+++++|+.++++|.+..+.|..
T Consensus 331 ~~~~v~~l~~~~~~~~~~~~~~~~ 354 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTVQNLEHHH 354 (357)
T ss_dssp EEEEEEEEEC-CCSCEEEC-----
T ss_pred EeeeEEEEEEcCcEeEeeeccccc
Confidence 468999999999999999776643
No 14
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1.3e-40 Score=303.24 Aligned_cols=235 Identities=26% Similarity=0.395 Sum_probs=203.9
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCC--CCcceeeeEEEECCEEEEEcccCC--C----CCCCeEEEEeCCCCceEEccC
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSL--KFDFDVSGIAMLDGFVYAVGGWDG--S----CRLDSVERYDPTKNEWSYIEP 231 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~--~~~r~~~~~~~~~~~iyv~GG~~~--~----~~~~~v~~yd~~~~~W~~~~~ 231 (400)
||++.. ..+++|||.+++|... ++ +.+|..++++..+++||++||... . ...+.+++||+.+++|+.+++
T Consensus 18 i~~~GG-~~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVND-TAAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECS-SEEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhccc-cceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 666622 3589999999999984 44 368999999999999999999631 1 123459999999999999999
Q ss_pred CCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCC
Q psy2979 232 MKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENT 310 (400)
Q Consensus 232 l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 310 (400)
+|.+|..|++++++++||++||... .+.. .+++++||+.+++|+.++++|.+|..|++++++++||++||........
T Consensus 96 ~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 174 (318)
T 2woz_A 96 LPSARCLFGLGEVDDKIYVVAGKDL-QTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCT 174 (318)
T ss_dssp BSSCBCSCEEEEETTEEEEEEEEBT-TTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBC
T ss_pred CCccccccceEEECCEEEEEcCccC-CCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCcc
Confidence 9999999999999999999999821 0223 7899999999999999999999999999999999999999975443327
Q ss_pred CeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEc
Q psy2979 311 NRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 390 (400)
Q Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 390 (400)
+++++||+.+++|+.++++|.+|..|++++++++|||+||. ......+++++||+++++|+.++++|.+|..|++++++
T Consensus 175 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 253 (318)
T 2woz_A 175 NRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGV-TEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLA 253 (318)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEE-ETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEET
T ss_pred ceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCc-CCCCccceEEEEECCCCeEEECCCCCCcccceEEEEEC
Confidence 89999999999999999999999999999999999999998 55556789999999999999999999999999999999
Q ss_pred cccccccc
Q psy2979 391 IHKSQFVD 398 (400)
Q Consensus 391 ~~~~~~~~ 398 (400)
++.|++.|
T Consensus 254 ~~i~v~GG 261 (318)
T 2woz_A 254 GSLYAIGG 261 (318)
T ss_dssp TEEEEECC
T ss_pred CEEEEECC
Confidence 97776644
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=4.7e-37 Score=306.28 Aligned_cols=255 Identities=14% Similarity=0.178 Sum_probs=211.4
Q ss_pred ceEEccCCcccceeeeEEEECCeEEEEE-----eecCEEEEEECCCCCeEEcc-C-----CCCcceeeeEEEE--CCEEE
Q psy2979 136 VWKTLSCLPFAISKHGLVVSGRNTIYCL-----DIVDIVYVAASMHKILHSLG-S-----LKFDFDVSGIAML--DGFVY 202 (400)
Q Consensus 136 ~w~~~~~~~~~~~~~~~~~~~~~~iyv~-----~~~~~~~~yd~~~~~w~~~~-~-----~~~~r~~~~~~~~--~~~iy 202 (400)
+|...+..|..|.+++ +++++. ||++ ...+++++||+.+++|..++ + +|.+|..|+++.+ +++||
T Consensus 378 ~~~~~~~~p~rr~g~~-~~~~~~-iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~ly 455 (695)
T 2zwa_A 378 QLLECECPINRKFGDV-DVAGND-VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLL 455 (695)
T ss_dssp EEEECCCTTCCBSCEE-EECSSC-EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEE
T ss_pred eEeccCCCCCCceeEE-EEECCE-EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEE
Confidence 3555555566666544 448888 9999 24578999999999999998 5 7899999999999 99999
Q ss_pred EEcccCCCC-CCCeEEEEeCCCCceEEccCCCCcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC
Q psy2979 203 AVGGWDGSC-RLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP 280 (400)
Q Consensus 203 v~GG~~~~~-~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~ 280 (400)
++||.++.. .++++++||+.+++|+.+++||.+|..|+++++ +++|||+||. ++.. ++++||+.+++|+.+++
T Consensus 456 v~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~---~~~~--~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 456 LIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGV---TEGP--AMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp EECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCB---CSSC--SEEEEETTTTEEEECCC
T ss_pred EEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCC---CCCC--CEEEEECCCCceEEccC
Confidence 999998654 688999999999999999999999999999996 9999999998 5432 89999999999999986
Q ss_pred ---CCCCceeeeEEEEC---CeEEEEcCcCCCC-CCCCeEEEEECCCCe------EEEccCC-cCccCcceEEEEC-CEE
Q psy2979 281 ---MLIPRSGAAICALD---SCIYVLGGWHAST-ENTNRVECYHIAENT------WEYKSPM-KEKRYRPGIAVID-GKI 345 (400)
Q Consensus 281 ---~~~~r~~~~~~~~~---~~iyv~GG~~~~~-~~~~~v~~yd~~~~~------W~~~~~~-~~~~~~~~~~~~~-~~l 345 (400)
+|.+|..|++++++ ++||++||..... ...+++++||+.+++ |+.++++ +.+|..|++++++ ++|
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~i 610 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKL 610 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEE
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEE
Confidence 89999999988876 8999999985442 227899999999999 9999886 4899999999999 999
Q ss_pred EEEcCccCCC---CCCCeEEEEECCCCcEEEecCCC--------CCCCceeeEEEcccccccccC
Q psy2979 346 YVLGGEEGWD---GYHDSIECYDVDNDSWEIMSHLP--------SARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 346 yv~GG~~~~~---~~~~~v~~yd~~~~~W~~~~~~~--------~~r~~~~~~~~~~~~~~~~~~ 399 (400)
||+||. +.. ...+++++||+.+++|+.++ +| ..+.+|+++++++..++++||
T Consensus 611 yv~GG~-~~~~~~~~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GG 673 (695)
T 2zwa_A 611 LIVGGT-SPSGLFDRTNSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673 (695)
T ss_dssp EEECCB-CSSCCCCTTTSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSCEEECC---CEEEECC
T ss_pred EEECCc-cCCCCCCCCCeEEEEECCCCeEEEee-ccccccCCCCccceeeeEEEeCCCEEEEEeC
Confidence 999998 433 25789999999999999653 22 246789999998844444554
No 16
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=100.00 E-value=1.9e-37 Score=308.83 Aligned_cols=284 Identities=13% Similarity=0.096 Sum_probs=225.6
Q ss_pred CcEEEEEeccCCC------cccceEEEEEcCCCceEEccCCcccceeee--EEE-ECCeEEEEE--eecCEEEEEECCCC
Q psy2979 109 INVIIAVGGEDDK------VVLRSVEGFCVKTKVWKTLSCLPFAISKHG--LVV-SGRNTIYCL--DIVDIVYVAASMHK 177 (400)
Q Consensus 109 ~~~i~~~gg~~~~------~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~--~~~-~~~~~iyv~--~~~~~~~~yd~~~~ 177 (400)
.+.++++||.+.. .....+++||+.+++|..++.+|.+|..++ +++ .++. ||++ ....++++||+.++
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~~yd~~t~ 275 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSD 275 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGT
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceEEecCcCC
Confidence 4789999997632 134578999999999999988887776654 444 4777 9999 33458999999999
Q ss_pred CeEEccCCCCcceeeeEEEE-CCEEEEEcc-cCCCCCCCeEEEEeCCCCceEEc-----cCCCCcccccEEEEeCCEEEE
Q psy2979 178 ILHSLGSLKFDFDVSGIAML-DGFVYAVGG-WDGSCRLDSVERYDPTKNEWSYI-----EPMKLAVTSPAVVAHEGMLYV 250 (400)
Q Consensus 178 ~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG-~~~~~~~~~v~~yd~~~~~W~~~-----~~l~~~~~~~~~~~~~~~iyv 250 (400)
+|.++++|+.+|..++++.+ +++||++|| .++....+++++||+.+++|+.+ ++|+..+. ++++..++++|+
T Consensus 276 ~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv 354 (656)
T 1k3i_A 276 SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-QGLYRSDNHAWL 354 (656)
T ss_dssp EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-TGGGTTTCSCCE
T ss_pred ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc-cceeecCCceEE
Confidence 99999999999999999999 999999999 45556788999999999999998 45555554 355668999999
Q ss_pred EcCccccCCCC-----cceEEEEeCCCCceeeccC-CCC------CceeeeEEE---ECCeEEEEcCcCCC---CCCCC-
Q psy2979 251 TGGAILEDGDG-----IEQVQRYNPKVNQWQDLAP-MLI------PRSGAAICA---LDSCIYVLGGWHAS---TENTN- 311 (400)
Q Consensus 251 ~GG~~~~~~~~-----~~~v~~yd~~~~~W~~~~~-~~~------~r~~~~~~~---~~~~iyv~GG~~~~---~~~~~- 311 (400)
+||. ++.. .+.++.||+.++.|..... .+. ++..++++. .+++||++||.+.. .. .+
T Consensus 355 ~Gg~---~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~-~~~ 430 (656)
T 1k3i_A 355 FGWK---KGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA-TTN 430 (656)
T ss_dssp EECG---GGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC-CCC
T ss_pred EECC---CCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc-CCc
Confidence 9998 5431 6789999999999875432 111 233344443 48999999996431 12 33
Q ss_pred --eEEEEECCCCeEEEcc--CCcCccCcceEEEE-CCEEEEEcCccCC-----CCCCCeEEEEECCCCcEEEecCCCCCC
Q psy2979 312 --RVECYHIAENTWEYKS--PMKEKRYRPGIAVI-DGKIYVLGGEEGW-----DGYHDSIECYDVDNDSWEIMSHLPSAR 381 (400)
Q Consensus 312 --~v~~yd~~~~~W~~~~--~~~~~~~~~~~~~~-~~~lyv~GG~~~~-----~~~~~~v~~yd~~~~~W~~~~~~~~~r 381 (400)
.+++||+.+++|..+. +||.+|..++++++ +|+|||+||.+.. .....++++|||++++|+.++.||.+|
T Consensus 431 ~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R 510 (656)
T 1k3i_A 431 AHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVR 510 (656)
T ss_dssp EEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCC
T ss_pred ceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCcc
Confidence 7999999999999987 99999999999988 9999999997211 234688999999999999999999999
Q ss_pred CceeeEEE--ccccccccc
Q psy2979 382 SWLGCVPL--QIHKSQFVD 398 (400)
Q Consensus 382 ~~~~~~~~--~~~~~~~~~ 398 (400)
..|+++++ +++++++.|
T Consensus 511 ~~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 511 VYHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp CTTEEEEECTTSCEEEEEC
T ss_pred ccccHhhcCCCcEEEecCC
Confidence 99998887 665554433
No 17
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=9.3e-38 Score=311.37 Aligned_cols=254 Identities=13% Similarity=0.121 Sum_probs=212.0
Q ss_pred CCcEEEEEeccCCCcccceEEEEEcCCCceEEcc-C-----CcccceeeeEEEE--CCeEEEEE-------eecCEEEEE
Q psy2979 108 SINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLS-C-----LPFAISKHGLVVS--GRNTIYCL-------DIVDIVYVA 172 (400)
Q Consensus 108 ~~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~-~-----~~~~~~~~~~~~~--~~~~iyv~-------~~~~~~~~y 172 (400)
+.+.|+++||.+. ...+++++||+.+++|..++ + +|.+|..|+++++ ++. ||++ ...++++.|
T Consensus 396 ~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~-lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ-LLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE-EEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE-EEEEcCCCCCCCccccEEEE
Confidence 3578999999876 77889999999999999988 5 7899999999999 888 9999 246789999
Q ss_pred ECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC---CCCcccccEEEEeC---
Q psy2979 173 ASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP---MKLAVTSPAVVAHE--- 245 (400)
Q Consensus 173 d~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---l~~~~~~~~~~~~~--- 245 (400)
|+.+++|+.+++||.+|..|+++.+ +++||++||.++.. ++++||+.+++|+.+++ +|.+|..|++++++
T Consensus 474 d~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred eCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC---CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 9999999999999999999999997 99999999987655 89999999999999987 89999999988877
Q ss_pred CEEEEEcCccccCCCC-cceEEEEeCCCCc------eeeccCC-CCCceeeeEEEEC-CeEEEEcCcCCCC--CCCCeEE
Q psy2979 246 GMLYVTGGAILEDGDG-IEQVQRYNPKVNQ------WQDLAPM-LIPRSGAAICALD-SCIYVLGGWHAST--ENTNRVE 314 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~------W~~~~~~-~~~r~~~~~~~~~-~~iyv~GG~~~~~--~~~~~v~ 314 (400)
++||++||... ++.. .+++++||+.+++ |+.++++ +.+|.+|++++++ ++||++||.+... ...++++
T Consensus 551 ~~iyv~GG~~~-~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 551 KQGIILGGGFM-DQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TEEEEECCBCT-TSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CEEEEECCcCC-CCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 89999999831 1113 7899999999999 8999876 5899999999999 9999999976543 1278999
Q ss_pred EEECCCCeEEEccCCc--------CccCcceEEEECC-EEEEEcCccCC---CCCCCeEEEEECCC
Q psy2979 315 CYHIAENTWEYKSPMK--------EKRYRPGIAVIDG-KIYVLGGEEGW---DGYHDSIECYDVDN 368 (400)
Q Consensus 315 ~yd~~~~~W~~~~~~~--------~~~~~~~~~~~~~-~lyv~GG~~~~---~~~~~~v~~yd~~~ 368 (400)
+||+.+++|+.++ +| ..+.+|+++++++ +|||+||.... +...+.+|.+|..+
T Consensus 630 ~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~~ldl~~ 694 (695)
T 2zwa_A 630 SLDPLSETLTSIP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGLKLIAIA 694 (695)
T ss_dssp EEETTTTEEEECC-CCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCEEEEECC
T ss_pred EEECCCCeEEEee-ccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceEEEEEEc
Confidence 9999999999653 22 1356788887765 99999996211 22345778877654
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=100.00 E-value=1e-33 Score=282.04 Aligned_cols=263 Identities=16% Similarity=0.209 Sum_probs=204.2
Q ss_pred EEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEEe------------ecCEEEEEECCCCCeEEccCCCCcceee
Q psy2979 127 VEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCLD------------IVDIVYVAASMHKILHSLGSLKFDFDVS 192 (400)
Q Consensus 127 ~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~~------------~~~~~~~yd~~~~~w~~~~~~~~~r~~~ 192 (400)
.+.||+.+++|..++++|. ..++++++ +++ ||++. ....+++||+.+++|..+++|+.+|..+
T Consensus 168 ~~~~dp~~~~W~~~~~~P~--~~~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~ 244 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPI--VPAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF 244 (656)
T ss_dssp CCCCCTTSCEEEEEEECSS--CCSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS
T ss_pred cccCCCCCCeeeeeccCCC--CceeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCc
Confidence 5678899999999887765 44556666 788 99991 1236899999999999999998888766
Q ss_pred e--EEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe-CCEEEEEcCccccCCCC-cceEEE
Q psy2979 193 G--IAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDG-IEQVQR 267 (400)
Q Consensus 193 ~--~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~-~~~v~~ 267 (400)
+ ++. .+++||++||.... ++++||+.+++|+.+++||.+|..|+++++ +++||++||.. ++.. .+++++
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~----~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~--~~~~~~~~~e~ 318 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW--SGGVFEKNGEV 318 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTT----CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCC--CSSSCCCCEEE
T ss_pred cccccCCCCCCEEEeCCCCCC----ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcc--cCCcccccceE
Confidence 4 333 48999999997643 799999999999999999999999999999 99999999942 4443 788999
Q ss_pred EeCCCCceeec-----cCCCCCceeeeEEEECCeEEEEcCcCCCC---CCCCeEEEEECCCCeEEEcc-CCcC------c
Q psy2979 268 YNPKVNQWQDL-----APMLIPRSGAAICALDSCIYVLGGWHAST---ENTNRVECYHIAENTWEYKS-PMKE------K 332 (400)
Q Consensus 268 yd~~~~~W~~~-----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~yd~~~~~W~~~~-~~~~------~ 332 (400)
||+.+++|+.+ .+|+..+.. +++..++++|++||.++.. ...+.++.||+.++.|.... ..+. .
T Consensus 319 yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~ 397 (656)
T 1k3i_A 319 YSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPD 397 (656)
T ss_dssp EETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCC
T ss_pred eCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCC
Confidence 99999999997 466666553 5566799999999976531 11678999999999987533 2222 2
Q ss_pred cCcceEEE---ECCEEEEEcCcc--CCCCCCC---eEEEEECCCCcEEEec--CCCCCCCceeeEEEcccccccccC
Q psy2979 333 RYRPGIAV---IDGKIYVLGGEE--GWDGYHD---SIECYDVDNDSWEIMS--HLPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 333 ~~~~~~~~---~~~~lyv~GG~~--~~~~~~~---~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
+..+.++. .+++||++||.. ......+ .+++||+.+++|..+. .||.+|..|+++++.+..++++||
T Consensus 398 ~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG 474 (656)
T 1k3i_A 398 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG 474 (656)
T ss_dssp CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECC
T ss_pred CCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECC
Confidence 23344443 489999999962 1122234 7999999999999986 899999999999994445555565
No 19
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.69 E-value=9.9e-17 Score=122.15 Aligned_cols=88 Identities=22% Similarity=0.210 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc-ceeecCCCCHH---HHHHHhhhcccccCchhHHH
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL-ETIRLPQLSPY---FLHDCVEQCAIIKNNPQCAQ 77 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m-~~vrl~~l~~~---~l~~~i~~~~l~~~~~~c~~ 77 (400)
+.+++.|+ |+++.||||+|.++|+.|+|||.||||+|+||++. ..|.++.++++ .|++++|++++..+..+..+
T Consensus 17 ~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ 94 (119)
T 3m5b_A 17 DRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQWALGEGISPSTFAQLLNFVYGESVELQPGELRP 94 (119)
T ss_dssp CHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCCCEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHH
T ss_pred HHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhcCCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHH
Confidence 56788887 78899999999999999999999999999999986 57889999998 67789999999999999999
Q ss_pred HHHHHHhcCCCccc
Q psy2979 78 LVEEAKLFHLLPDR 91 (400)
Q Consensus 78 ~l~~a~~~~~~~~~ 91 (400)
++.+|..+++....
T Consensus 95 ll~aA~~l~i~~l~ 108 (119)
T 3m5b_A 95 LQEAARALGVQSLE 108 (119)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCHHHH
Confidence 99999998865544
No 20
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.67 E-value=6.6e-17 Score=123.67 Aligned_cols=90 Identities=28% Similarity=0.369 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc------ceeecCCCCHH---HHHHHhhhcccccCc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------ETIRLPQLSPY---FLHDCVEQCAIIKNN 72 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m------~~vrl~~l~~~---~l~~~i~~~~l~~~~ 72 (400)
+.+++.|+++|+++.||||+|.++|+.|+|||.|||++|+||++| ..|+++.++++ .+++++|++++..+.
T Consensus 9 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~ 88 (119)
T 3b84_A 9 VRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGSVVLPAGFAEIFGLLLDFFYTGHLALTS 88 (119)
T ss_dssp HHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTTCCCEEECGGGHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCCCCeEEeCCCCHHHHHHHHHHHcCCCCccCH
Confidence 468999999999999999999999999999999999999999988 57899999886 578999999998888
Q ss_pred hhHHHHHHHHHhcCCCccc
Q psy2979 73 PQCAQLVEEAKLFHLLPDR 91 (400)
Q Consensus 73 ~~c~~~l~~a~~~~~~~~~ 91 (400)
.+..+++..|..+++....
T Consensus 89 ~~v~~ll~~A~~~~i~~L~ 107 (119)
T 3b84_A 89 GNRDQVLLAARELRVPEAV 107 (119)
T ss_dssp TTHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHH
Confidence 8999999999998765543
No 21
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.66 E-value=9.4e-17 Score=125.61 Aligned_cols=91 Identities=27% Similarity=0.360 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc------ceeecCCCCHH---HHHHHhhhcccccCc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------ETIRLPQLSPY---FLHDCVEQCAIIKNN 72 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m------~~vrl~~l~~~---~l~~~i~~~~l~~~~ 72 (400)
..+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+|+.++++ .+++++|++++..+.
T Consensus 10 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~ 89 (135)
T 2yy9_A 10 VRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGSVVLPAGFAEIFGLLLDFFYTGHLALTS 89 (135)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC----CCEEECGGGHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCCCCeEEeCCCCHHHHHHHHHHHhCCCCCCCH
Confidence 468999999999999999999999999999999999999999988 46899999886 578999999998888
Q ss_pred hhHHHHHHHHHhcCCCcccc
Q psy2979 73 PQCAQLVEEAKLFHLLPDRR 92 (400)
Q Consensus 73 ~~c~~~l~~a~~~~~~~~~~ 92 (400)
.+..+++..|..+++....+
T Consensus 90 ~~v~~ll~~A~~l~i~~L~~ 109 (135)
T 2yy9_A 90 GNRDQVLLAAKELRVPEAVE 109 (135)
T ss_dssp TTHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHH
Confidence 99999999999988655443
No 22
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.66 E-value=1.7e-16 Score=122.71 Aligned_cols=91 Identities=29% Similarity=0.458 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc--------ceeecCC-CCHH---HHHHHhhhcccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL--------ETIRLPQ-LSPY---FLHDCVEQCAII 69 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m--------~~vrl~~-l~~~---~l~~~i~~~~l~ 69 (400)
+.+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+++. ++++ .+++++|++++.
T Consensus 17 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~~~ 96 (125)
T 3ohu_A 17 TNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLL 96 (125)
T ss_dssp HHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCceE
Confidence 468999999999999999999999999999999999999999988 3688988 9987 678899999998
Q ss_pred cCchhHHHHHHHHHhcCCCcccc
Q psy2979 70 KNNPQCAQLVEEAKLFHLLPDRR 92 (400)
Q Consensus 70 ~~~~~c~~~l~~a~~~~~~~~~~ 92 (400)
.+..+..+++..|..+++....+
T Consensus 97 ~~~~~v~~ll~~A~~l~i~~L~~ 119 (125)
T 3ohu_A 97 LSRENIREVIRCAEFLRMHNLED 119 (125)
T ss_dssp ECTTTHHHHHHHHHHHTBSSCTT
T ss_pred ECHHHHHHHHHHHHHhCCHHHHH
Confidence 89999999999999988766543
No 23
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.66 E-value=1.4e-16 Score=121.01 Aligned_cols=87 Identities=29% Similarity=0.470 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc-----ceeecCCCCHH---HHHHHhhhccc-ccCc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL-----ETIRLPQLSPY---FLHDCVEQCAI-IKNN 72 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m-----~~vrl~~l~~~---~l~~~i~~~~l-~~~~ 72 (400)
..+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+++.++++ .+++++|++++ ..+.
T Consensus 16 ~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~ 95 (116)
T 3fkc_A 16 GSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRAEIFAEILNYIYSSKIVRVRS 95 (116)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSCCSEEEECSSCHHHHHHHHHHHTTSCCCSCCH
T ss_pred HHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhhcCCCcCCCCH
Confidence 468999999999999999999999999999999999999999988 47999999998 67889999999 6888
Q ss_pred hhHHHHHHHHHhcCCC
Q psy2979 73 PQCAQLVEEAKLFHLL 88 (400)
Q Consensus 73 ~~c~~~l~~a~~~~~~ 88 (400)
.+..+++..|..+++.
T Consensus 96 ~~~~~ll~~A~~l~i~ 111 (116)
T 3fkc_A 96 DLLDELIKSGQLLGVK 111 (116)
T ss_dssp HHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhCcc
Confidence 8999999999888753
No 24
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.65 E-value=1.6e-16 Score=122.42 Aligned_cols=92 Identities=30% Similarity=0.471 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc--------ceeecC-CCCHH---HHHHHhhhcccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL--------ETIRLP-QLSPY---FLHDCVEQCAII 69 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m--------~~vrl~-~l~~~---~l~~~i~~~~l~ 69 (400)
..+++.|+++|+++.||||+|.++|+.|+|||.|||++|+||++| ..|+++ .++++ .+++++|++++.
T Consensus 14 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~~~ 93 (124)
T 2ihc_A 14 TNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLI 93 (124)
T ss_dssp HHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSEEE
T ss_pred HHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCCcc
Confidence 468999999999999999999999999999999999999999988 358885 88887 578999999998
Q ss_pred cCchhHHHHHHHHHhcCCCccccc
Q psy2979 70 KNNPQCAQLVEEAKLFHLLPDRRS 93 (400)
Q Consensus 70 ~~~~~c~~~l~~a~~~~~~~~~~~ 93 (400)
.+..+..+++..|..+++....+.
T Consensus 94 i~~~~v~~ll~~A~~~~~~~L~~~ 117 (124)
T 2ihc_A 94 LSKENVDEVCKCVEFLSVHNIEES 117 (124)
T ss_dssp EETTTHHHHHHHHHHHTBSSCCGG
T ss_pred cCHHHHHHHHHHHHHHCCHHHHHH
Confidence 888899999999999987765543
No 25
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.65 E-value=1.3e-16 Score=122.03 Aligned_cols=89 Identities=27% Similarity=0.434 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc-----ceeecCCCCHH---HHHHHhhhcccccCch
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL-----ETIRLPQLSPY---FLHDCVEQCAIIKNNP 73 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m-----~~vrl~~l~~~---~l~~~i~~~~l~~~~~ 73 (400)
+.+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|.++.++++ .+++++|++++..+..
T Consensus 12 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~ 91 (119)
T 2q81_A 12 QHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKDVVHLDISNAAGLGQVLEFMYTAKLSLSPE 91 (119)
T ss_dssp HHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCCSGGGGGGCCHHHHHHHHHHHHHSCCCCCTT
T ss_pred HHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCCCCEEEeCCCCHHHHHHHHHHHcCCCCccCHH
Confidence 468999999999999999999999999999999999999999998 56888888886 6789999999988888
Q ss_pred hHHHHHHHHHhcCCCcc
Q psy2979 74 QCAQLVEEAKLFHLLPD 90 (400)
Q Consensus 74 ~c~~~l~~a~~~~~~~~ 90 (400)
+..+++..|..+++...
T Consensus 92 ~~~~ll~~A~~l~i~~L 108 (119)
T 2q81_A 92 NVDDVLAVATFLQMQDI 108 (119)
T ss_dssp THHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCCHHH
Confidence 99999999999876544
No 26
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.65 E-value=2.3e-16 Score=121.11 Aligned_cols=89 Identities=27% Similarity=0.391 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc-----ceeecCCCCHH---HHHHHhhhcccccCch
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL-----ETIRLPQLSPY---FLHDCVEQCAIIKNNP 73 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m-----~~vrl~~l~~~---~l~~~i~~~~l~~~~~ 73 (400)
+.+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+++.++++ .+++++|++++..+..
T Consensus 13 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~ 92 (121)
T 1buo_A 13 TGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAE 92 (121)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCCSEEEECSSCHHHHHHHHHHHHHSCCCCCGG
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCCCcEEEeCCCCHHHHHHHHHhhcCCCcCCCHH
Confidence 468999999999999999999999999999999999999999988 57999999997 5788999999988889
Q ss_pred hHHHHHHHHHhcCCCcc
Q psy2979 74 QCAQLVEEAKLFHLLPD 90 (400)
Q Consensus 74 ~c~~~l~~a~~~~~~~~ 90 (400)
+..+++..|..+++...
T Consensus 93 ~~~~ll~~A~~~~i~~L 109 (121)
T 1buo_A 93 DLDDLLYAAEILEIEYL 109 (121)
T ss_dssp GHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHCCHHH
Confidence 99999999998876443
No 27
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.64 E-value=3.3e-16 Score=121.68 Aligned_cols=92 Identities=30% Similarity=0.451 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc------ceeecC-CCCHH---HHHHHhhhcccccC
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------ETIRLP-QLSPY---FLHDCVEQCAIIKN 71 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m------~~vrl~-~l~~~---~l~~~i~~~~l~~~ 71 (400)
+.+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+++ .++++ .+++++|++++..+
T Consensus 18 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~ 97 (129)
T 3ga1_A 18 NSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSAVVELPAAVQPQSFQQILSFCYTGRLSMN 97 (129)
T ss_dssp HHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHCCCSEEECCTTCCHHHHHHHHHHHHHSEEECC
T ss_pred HHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCCCCCEEEECCCCCHHHHHHHHHHHhCCccccC
Confidence 468999999999999999999999999999999999999999988 478997 89998 57889999999989
Q ss_pred chhHHHHHHHHHhcCCCccccc
Q psy2979 72 NPQCAQLVEEAKLFHLLPDRRS 93 (400)
Q Consensus 72 ~~~c~~~l~~a~~~~~~~~~~~ 93 (400)
..+..+++..|..+++....+.
T Consensus 98 ~~~~~~ll~~A~~~~i~~l~~~ 119 (129)
T 3ga1_A 98 VGDQDLLMYTAGFLQIQEIMEK 119 (129)
T ss_dssp TTTHHHHHHHHHHTTBTTSSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999987665443
No 28
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.63 E-value=5.1e-16 Score=119.06 Aligned_cols=89 Identities=31% Similarity=0.539 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc----------ceeecCCCCHH---HHHHHhhhccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPY---FLHDCVEQCAI 68 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m----------~~vrl~~l~~~---~l~~~i~~~~l 68 (400)
+.+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+++.++++ .+++++|++++
T Consensus 10 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~ 89 (120)
T 2if5_A 10 SDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATL 89 (120)
T ss_dssp HHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCC
Confidence 468999999999999999999999999999999999999999987 46899999997 57889999999
Q ss_pred ccCchhHHHHHHHHHhcCCCcc
Q psy2979 69 IKNNPQCAQLVEEAKLFHLLPD 90 (400)
Q Consensus 69 ~~~~~~c~~~l~~a~~~~~~~~ 90 (400)
..+..+..+++..|..+++...
T Consensus 90 ~~~~~~~~~ll~~A~~~~i~~L 111 (120)
T 2if5_A 90 TVSTANVGDILSAARLLEIPAV 111 (120)
T ss_dssp CCCGGGHHHHHHHHHHTTCHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHH
Confidence 8888999999999998876543
No 29
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.63 E-value=4.1e-16 Score=118.78 Aligned_cols=89 Identities=22% Similarity=0.338 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc------ceeecC--CCCHH---HHHHHhhhccccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------ETIRLP--QLSPY---FLHDCVEQCAIIK 70 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m------~~vrl~--~l~~~---~l~~~i~~~~l~~ 70 (400)
..+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+++ .++++ .+++++|++++..
T Consensus 7 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~ 86 (116)
T 2vpk_A 7 EHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNL 86 (116)
T ss_dssp HHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCSCEECCTTTCCHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCCCCCeEEeecCCCCHHHHHHHHHHHcCCCccc
Confidence 468999999999999999999999999999999999999999988 457777 89987 5789999999988
Q ss_pred CchhHHHHHHHHHhcCCCcc
Q psy2979 71 NNPQCAQLVEEAKLFHLLPD 90 (400)
Q Consensus 71 ~~~~c~~~l~~a~~~~~~~~ 90 (400)
+..+..+++..|..+++...
T Consensus 87 ~~~~v~~ll~~A~~~~i~~L 106 (116)
T 2vpk_A 87 DSWNVKEIHQAADYLKVEEV 106 (116)
T ss_dssp CTTTHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhCCHHH
Confidence 88899999999998876543
No 30
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.63 E-value=3e-16 Score=123.39 Aligned_cols=92 Identities=30% Similarity=0.465 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc--------ceeecC-CCCHH---HHHHHhhhcccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL--------ETIRLP-QLSPY---FLHDCVEQCAII 69 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m--------~~vrl~-~l~~~---~l~~~i~~~~l~ 69 (400)
..+++.|+++|+++.||||+|.++|+.|+|||.|||++|+||++| ..|+++ .++++ .+++++|++++.
T Consensus 21 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~~ 100 (138)
T 2z8h_A 21 TNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLI 100 (138)
T ss_dssp HHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCCcc
Confidence 468999999999999999999999999999999999999999988 358885 88887 578999999998
Q ss_pred cCchhHHHHHHHHHhcCCCccccc
Q psy2979 70 KNNPQCAQLVEEAKLFHLLPDRRS 93 (400)
Q Consensus 70 ~~~~~c~~~l~~a~~~~~~~~~~~ 93 (400)
.+..+..+++..|..+++....+.
T Consensus 101 i~~~~v~~ll~~A~~~~i~~L~~~ 124 (138)
T 2z8h_A 101 LSKDNVDEVCRCVEFLSVHNIEES 124 (138)
T ss_dssp CCTTTHHHHHHHHHHHTCGGGHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHH
Confidence 888999999999999987665443
No 31
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.62 E-value=4.6e-16 Score=122.97 Aligned_cols=90 Identities=28% Similarity=0.447 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc------------ceeecCCCCHH---HHHHHhhhc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------------ETIRLPQLSPY---FLHDCVEQC 66 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m------------~~vrl~~l~~~---~l~~~i~~~ 66 (400)
+.+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+|+.++++ .+++++|++
T Consensus 32 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg 111 (144)
T 2ppi_A 32 ARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSG 111 (144)
T ss_dssp HHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999999999999999999999999977 35889999997 678899999
Q ss_pred ccccCchhHHHHHHHHHhcCCCccc
Q psy2979 67 AIIKNNPQCAQLVEEAKLFHLLPDR 91 (400)
Q Consensus 67 ~l~~~~~~c~~~l~~a~~~~~~~~~ 91 (400)
++..+..+..+++..|..+++....
T Consensus 112 ~~~i~~~~v~~ll~~A~~l~i~~L~ 136 (144)
T 2ppi_A 112 QIRLNEDTIQDVVQAADLLLLTDLK 136 (144)
T ss_dssp CCCCCTTTHHHHHHHHHHTTCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcHHHH
Confidence 9988889999999999998765443
No 32
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.62 E-value=8.6e-16 Score=119.02 Aligned_cols=89 Identities=25% Similarity=0.359 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc---------ceeec-CCCCHH---HHHHHhhhccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL---------ETIRL-PQLSPY---FLHDCVEQCAI 68 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m---------~~vrl-~~l~~~---~l~~~i~~~~l 68 (400)
+.+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+| +.++++ .+++++|++++
T Consensus 14 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~~ 93 (127)
T 1r29_A 14 SDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRL 93 (127)
T ss_dssp HHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCCc
Confidence 468999999999999999999999999999999999999999987 46899 899987 57889999999
Q ss_pred ccCchhHHHHHHHHHhcCCCcc
Q psy2979 69 IKNNPQCAQLVEEAKLFHLLPD 90 (400)
Q Consensus 69 ~~~~~~c~~~l~~a~~~~~~~~ 90 (400)
..+..+..+++..|..+++...
T Consensus 94 ~~~~~~~~~ll~~A~~~~i~~L 115 (127)
T 1r29_A 94 NLREGNIMAVMATAMYLQMEHV 115 (127)
T ss_dssp CCCTTTHHHHHHHHHHTTCHHH
T ss_pred CcCHHHHHHHHHHHHHhCCHHH
Confidence 8888999999999999876543
No 33
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.48 E-value=6.3e-14 Score=111.30 Aligned_cols=90 Identities=22% Similarity=0.363 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc----------ceeecCCCCHH---HHHHHhhhccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPY---FLHDCVEQCAI 68 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m----------~~vrl~~l~~~---~l~~~i~~~~l 68 (400)
..++..|+++++++.||||+|.++++.|+|||.||+++|+||+.| ..|+++.++++ .+++++|++.+
T Consensus 10 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~ 89 (145)
T 4eoz_A 10 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA 89 (145)
T ss_dssp CCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCcc
Confidence 358899999999999999999999999999999999999999988 57999999998 57789999999
Q ss_pred ccCchhHHHHHHHHHhcCCCccc
Q psy2979 69 IKNNPQCAQLVEEAKLFHLLPDR 91 (400)
Q Consensus 69 ~~~~~~c~~~l~~a~~~~~~~~~ 91 (400)
..+..+..+++..|..+++....
T Consensus 90 ~~~~~~~~~ll~~A~~~~~~~l~ 112 (145)
T 4eoz_A 90 PNLDKMADDLLAAADKYALERLK 112 (145)
T ss_dssp TTGGGTHHHHHHHHHHTTCHHHH
T ss_pred CCcHHHHHHHHHHHHHhCHHHHH
Confidence 88888899999999998765543
No 34
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.47 E-value=5e-14 Score=124.69 Aligned_cols=89 Identities=30% Similarity=0.451 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHhcCceeceEEEEC---CeEEehhhHHHhhcCcccccc----------ceeecC------CCCHH---HH
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVD---GSKFPAHRVVLAASSPYFKVL----------ETIRLP------QLSPY---FL 59 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~---~~~~~~hr~vLaa~s~yf~~m----------~~vrl~------~l~~~---~l 59 (400)
..+++.|+++|+++.||||+|.++ |+.|+|||.|||++|+||++| ..|+++ .++++ .+
T Consensus 17 ~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~l 96 (279)
T 3i3n_A 17 SELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAV 96 (279)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHH
Confidence 568999999999999999999998 999999999999999999998 368898 78887 67
Q ss_pred HHHhhhcccccCchhHHHHHHHHHhcCCCcc
Q psy2979 60 HDCVEQCAIIKNNPQCAQLVEEAKLFHLLPD 90 (400)
Q Consensus 60 ~~~i~~~~l~~~~~~c~~~l~~a~~~~~~~~ 90 (400)
++++|++++..+..+..+++.+|..+++...
T Consensus 97 l~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L 127 (279)
T 3i3n_A 97 IEYMYTGRIRVSTGSVHEVLELADRFLLIRL 127 (279)
T ss_dssp HHHHHHSEEEEETTTHHHHHHHHHHTTCHHH
T ss_pred HHhhCcCCcccCHHHHHHHHHHHHHHCcHHH
Confidence 8899999998888889999999988875443
No 35
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.47 E-value=3.3e-14 Score=124.26 Aligned_cols=90 Identities=28% Similarity=0.447 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCccccccc------------eeecCCCCHH---HHHHHhhhc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVLE------------TIRLPQLSPY---FLHDCVEQC 66 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m~------------~vrl~~l~~~---~l~~~i~~~ 66 (400)
..+++.|+++|+++.||||+|.++|+.|+|||.|||++|+||++|. .|.++.++++ .+++++|++
T Consensus 16 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~ 95 (256)
T 3hve_A 16 ARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSG 95 (256)
T ss_dssp HHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCC
Confidence 4689999999999999999999999999999999999999999883 5889999998 677899999
Q ss_pred ccccCchhHHHHHHHHHhcCCCccc
Q psy2979 67 AIIKNNPQCAQLVEEAKLFHLLPDR 91 (400)
Q Consensus 67 ~l~~~~~~c~~~l~~a~~~~~~~~~ 91 (400)
++..+..+..+++.+|..+++....
T Consensus 96 ~~~i~~~~v~~ll~~A~~l~i~~l~ 120 (256)
T 3hve_A 96 QIRLNEDTIQDVVQAADLLLLTDLK 120 (256)
T ss_dssp CCCCC-CCHHHHHHHHHHHTCHHHH
T ss_pred CCcccHhHHHHHHHHHHHHChHHHH
Confidence 9988888999999999888765443
No 36
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.46 E-value=9e-14 Score=113.86 Aligned_cols=90 Identities=22% Similarity=0.363 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc----------ceeecCCCCHH---HHHHHhhhccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPY---FLHDCVEQCAI 68 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m----------~~vrl~~l~~~---~l~~~i~~~~l 68 (400)
..++..|+++++++.||||+|.++++.|+|||.||+++|+||+.| ..|.++.++++ .+++++|++++
T Consensus 19 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~ 98 (172)
T 3htm_A 19 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA 98 (172)
T ss_dssp CCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCC
Confidence 357899999999999999999999999999999999999999988 57999999998 57789999999
Q ss_pred ccCchhHHHHHHHHHhcCCCccc
Q psy2979 69 IKNNPQCAQLVEEAKLFHLLPDR 91 (400)
Q Consensus 69 ~~~~~~c~~~l~~a~~~~~~~~~ 91 (400)
..+..+..+++..|..+++....
T Consensus 99 ~~~~~~~~~ll~~A~~~~~~~l~ 121 (172)
T 3htm_A 99 PNLDKMADDLLAAADKYALERLK 121 (172)
T ss_dssp TTGGGTHHHHHHHHHHTTCHHHH
T ss_pred CCcHHHHHHHHHHHHHhCcHHHH
Confidence 88888899999999988765443
No 37
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.46 E-value=5e-14 Score=105.94 Aligned_cols=81 Identities=23% Similarity=0.286 Sum_probs=72.0
Q ss_pred HHHhcCceeceEEEECC----eEEehhhHHHhhcCcccccc---------ceeecCCCCHH---HHHHHhhhcccccCch
Q psy2979 10 EARKNNEFCDVTLCVDG----SKFPAHRVVLAASSPYFKVL---------ETIRLPQLSPY---FLHDCVEQCAIIKNNP 73 (400)
Q Consensus 10 ~~r~~~~~~Dv~l~~~~----~~~~~hr~vLaa~s~yf~~m---------~~vrl~~l~~~---~l~~~i~~~~l~~~~~ 73 (400)
+|++++.||||+|.+++ +.|+|||.|||++|+||++| ..|+++.++++ .+++++|++++..+..
T Consensus 1 ~l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~ 80 (109)
T 2vkp_A 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDEIDLEAD 80 (109)
T ss_dssp CCTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred CcccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence 36889999999999988 89999999999999999977 46899999997 6788999999988889
Q ss_pred hHHHHHHHHHhcCCCcc
Q psy2979 74 QCAQLVEEAKLFHLLPD 90 (400)
Q Consensus 74 ~c~~~l~~a~~~~~~~~ 90 (400)
++.+++..|..+++...
T Consensus 81 ~~~~ll~~A~~~~~~~L 97 (109)
T 2vkp_A 81 TVLATLYAAKKYIVPAL 97 (109)
T ss_dssp THHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCcHHH
Confidence 99999999999876543
No 38
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.32 E-value=2e-12 Score=116.38 Aligned_cols=89 Identities=22% Similarity=0.377 Sum_probs=79.2
Q ss_pred hHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc----------ceeecCCCCHH---HHHHHhhhcccc
Q psy2979 3 MVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPY---FLHDCVEQCAII 69 (400)
Q Consensus 3 ~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m----------~~vrl~~l~~~---~l~~~i~~~~l~ 69 (400)
.+++.|+++++++.|+||+|.++++.|+|||.|||++|+||++| ..|+|+.++++ .+++++|++++.
T Consensus 160 ~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~ 239 (312)
T 3hqi_A 160 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAP 239 (312)
T ss_dssp CHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCT
T ss_pred hHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCC
Confidence 57899999999999999999999999999999999999999987 47999999998 677899999887
Q ss_pred cCchhHHHHHHHHHhcCCCccc
Q psy2979 70 KNNPQCAQLVEEAKLFHLLPDR 91 (400)
Q Consensus 70 ~~~~~c~~~l~~a~~~~~~~~~ 91 (400)
.......+++.+|..|++....
T Consensus 240 ~~~~~~~~ll~~A~~~~~~~l~ 261 (312)
T 3hqi_A 240 NLDKMADDLLAAADKYALERLK 261 (312)
T ss_dssp THHHHHHHHHHHHHHTTCHHHH
T ss_pred ChHHHHHHHHHHHHHhCHHHHH
Confidence 7778889999999988765443
No 39
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.86 E-value=1.1e-05 Score=72.77 Aligned_cols=238 Identities=9% Similarity=0.043 Sum_probs=141.4
Q ss_pred cceEEEEEcCCCceEEcc-----CCcccceeeeEEEECCeEEEEE-eecCEEEEEECCCCCe-EEccCCCCcceeeeEEE
Q psy2979 124 LRSVEGFCVKTKVWKTLS-----CLPFAISKHGLVVSGRNTIYCL-DIVDIVYVAASMHKIL-HSLGSLKFDFDVSGIAM 196 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~-----~~~~~~~~~~~~~~~~~~iyv~-~~~~~~~~yd~~~~~w-~~~~~~~~~r~~~~~~~ 196 (400)
...+..+|+.++++..-- ..+.....+.++..++. +|+. ...+.+..+|+.+.+. ..++....|+ .++.
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~-lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~---~i~~ 91 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGI-GWIVVNNSHVIFAIDINTFKEVGRITGFTSPR---YIHF 91 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTE-EEEEEGGGTEEEEEETTTCCEEEEEECCSSEE---EEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCE-EEEEEcCCCEEEEEECcccEEEEEcCCCCCCc---EEEE
Confidence 568899999998876421 11222333556667888 9999 4457899999998876 3344333333 3333
Q ss_pred -ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCc----ccccEEEEeCCEEEEEcC-ccccCCCCcceEEEEeC
Q psy2979 197 -LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLA----VTSPAVVAHEGMLYVTGG-AILEDGDGIEQVQRYNP 270 (400)
Q Consensus 197 -~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~----~~~~~~~~~~~~iyv~GG-~~~~~~~~~~~v~~yd~ 270 (400)
-++++|+.... ...+.++|+.+++-...-+.... ..-..++..++++|+..- . .+.+.++|+
T Consensus 92 ~~~g~lyv~~~~-----~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~-------~~~v~viD~ 159 (328)
T 3dsm_A 92 LSDEKAYVTQIW-----DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSY-------QNRILKIDT 159 (328)
T ss_dssp EETTEEEEEEBS-----CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTT-------CCEEEEEET
T ss_pred eCCCeEEEEECC-----CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCC-------CCEEEEEEC
Confidence 57899998643 26799999998875432122210 022344457999999852 2 247999999
Q ss_pred CCCceeeccCC-CCCceeeeEEE-ECCeEEEEcCcCCCCC----CCCeEEEEECCCCeEEEccCCcCccCcceEEEE--C
Q psy2979 271 KVNQWQDLAPM-LIPRSGAAICA-LDSCIYVLGGWHASTE----NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--D 342 (400)
Q Consensus 271 ~~~~W~~~~~~-~~~r~~~~~~~-~~~~iyv~GG~~~~~~----~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~ 342 (400)
.+.+....-+. ..| ..++. -++++|+......... ....+.++|+.+++....-..+......+++.- +
T Consensus 160 ~t~~~~~~i~~g~~p---~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~ 236 (328)
T 3dsm_A 160 ETDKVVDELTIGIQP---TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR 236 (328)
T ss_dssp TTTEEEEEEECSSCB---CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS
T ss_pred CCCeEEEEEEcCCCc---cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC
Confidence 98875433222 122 22332 3688888864321111 026899999999886643334333222333333 5
Q ss_pred CEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC-CCCceeeEEE
Q psy2979 343 GKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS-ARSWLGCVPL 389 (400)
Q Consensus 343 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~ 389 (400)
+.+|+..+ .|++||+.+++.......+. ...-.++++-
T Consensus 237 ~~lyv~~~---------~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vd 275 (328)
T 3dsm_A 237 DTLYWINN---------DIWRMPVEADRVPVRPFLEFRDTKYYGLTVN 275 (328)
T ss_dssp CEEEEESS---------SEEEEETTCSSCCSSCSBCCCSSCEEEEEEC
T ss_pred CEEEEEcc---------EEEEEECCCCceeeeeeecCCCCceEEEEEc
Confidence 67888643 68999999887532222222 2334455554
No 40
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.71 E-value=4.1e-06 Score=71.08 Aligned_cols=185 Identities=17% Similarity=0.100 Sum_probs=125.4
Q ss_pred eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEe
Q psy2979 190 DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYN 269 (400)
Q Consensus 190 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd 269 (400)
..+++...++.+|+..|..+ .+++..+|+.+++=..--+++......+++..+++||++... .+.++.||
T Consensus 22 ftqGL~~~~~~LyestG~~g---~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~-------~~~v~v~D 91 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETG---RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR-------NHEGFVYD 91 (243)
T ss_dssp CEEEEEEETTEEEEEECCTT---SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS-------SSEEEEEE
T ss_pred ccccEEEECCEEEEECCCCC---CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee-------CCEEEEEE
Confidence 44577777899999998654 367999999999876666777777777888899999999766 45899999
Q ss_pred CCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-c--cCCcCccCc-ceEEEECCEE
Q psy2979 270 PKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEY-K--SPMKEKRYR-PGIAVIDGKI 345 (400)
Q Consensus 270 ~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~--~~~~~~~~~-~~~~~~~~~l 345 (400)
+.+.+-. ..++.+..+.+++.-++++|+.-| .+++..+||++.+-.. + ...+.+... -.+...+|+|
T Consensus 92 ~~tl~~~--~ti~~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~l 162 (243)
T 3mbr_X 92 LATLTPR--ARFRYPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGEL 162 (243)
T ss_dssp TTTTEEE--EEEECSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEE
T ss_pred CCcCcEE--EEEeCCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEE
Confidence 9776533 333334456777766788999876 4689999999876332 2 122222221 1244459999
Q ss_pred EEEcCccCCCCCCCeEEEEECCCCc---EEEecCCCC---------CCCceeeEEEcccccccccC
Q psy2979 346 YVLGGEEGWDGYHDSIECYDVDNDS---WEIMSHLPS---------ARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 346 yv~GG~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~---------~r~~~~~~~~~~~~~~~~~~ 399 (400)
|+---. .+.|.+.||++++ |-.++.+.. .-.--|.|...+..-+||=|
T Consensus 163 yanvw~------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 163 LANVWL------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEETT------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEECC------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 965533 4689999999985 555544321 11235566665555565543
No 41
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.67 E-value=0.00016 Score=66.25 Aligned_cols=212 Identities=15% Similarity=0.222 Sum_probs=127.9
Q ss_pred ceEEEEEcCCCc--eEEccCCc-------ccceeeeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCcceeee
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLP-------FAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFDFDVSG 193 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~-------~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~r~~~~ 193 (400)
..+.+||+.+++ |..-.... ......+.+..++. +|+......++.+|+.+++ |+...+-. ...+
T Consensus 63 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~---~~~~ 138 (376)
T 3q7m_A 63 GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGH-VYIGSEKAQVYALNTSDGTVAWQTKVAGE---ALSR 138 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECSSC---CCSC
T ss_pred CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCE-EEEEcCCCEEEEEECCCCCEEEEEeCCCc---eEcC
Confidence 378899998875 76432111 12223345566777 9988767789999998776 65432211 1222
Q ss_pred EEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--eEEccCCCC--cccccEEEEeCCEEEEEcCccccCCCCcceEEEEe
Q psy2979 194 IAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE--WSYIEPMKL--AVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYN 269 (400)
Q Consensus 194 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~l~~--~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd 269 (400)
.+..++.+|+..+ ...+..||+.+++ |+.-.+-+. .+...+.+..++.+|+. .. + ..+..+|
T Consensus 139 p~~~~~~v~v~~~------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g-~~---~----g~l~~~d 204 (376)
T 3q7m_A 139 PVVSDGLVLIHTS------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVG-GD---N----GRVSAVL 204 (376)
T ss_dssp CEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEEC-CT---T----TEEEEEE
T ss_pred CEEECCEEEEEcC------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEE-cC---C----CEEEEEE
Confidence 3445888887543 2468999998875 876543221 12223345557887763 33 2 3689999
Q ss_pred CCCCc--eeeccCCCCCc--------eeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCC--eEEEccCCcCccCcce
Q psy2979 270 PKVNQ--WQDLAPMLIPR--------SGAAICALDSCIYVLGGWHASTENTNRVECYHIAEN--TWEYKSPMKEKRYRPG 337 (400)
Q Consensus 270 ~~~~~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~ 337 (400)
+.+.+ |+.-...+... .....+..++.+|+.+. ...+.++|+.++ .|+.-..- ...
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-------~g~l~~~d~~tG~~~w~~~~~~-----~~~ 272 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY-------NGNLTALDLRSGQIMWKRELGS-----VND 272 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT-------TSCEEEEETTTCCEEEEECCCC-----EEE
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec-------CcEEEEEECCCCcEEeeccCCC-----CCC
Confidence 87654 77643322111 12333455888888652 347999999877 47754211 223
Q ss_pred EEEECCEEEEEcCccCCCCCCCeEEEEECCCCc--EEE
Q psy2979 338 IAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEI 373 (400)
Q Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 373 (400)
.++.++.||+.... ..+++||+.+++ |+.
T Consensus 273 ~~~~~~~l~~~~~~-------g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 273 FIVDGNRIYLVDQN-------DRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp EEEETTEEEEEETT-------CCEEEEETTTCCEEEEE
T ss_pred ceEECCEEEEEcCC-------CeEEEEECCCCcEEEee
Confidence 55568999997643 368999998875 765
No 42
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.65 E-value=3.7e-05 Score=69.23 Aligned_cols=208 Identities=10% Similarity=-0.035 Sum_probs=124.6
Q ss_pred cCEEEEEECCCCCeEEcc-----CCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCce-EEccCCCCccccc
Q psy2979 166 VDIVYVAASMHKILHSLG-----SLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEW-SYIEPMKLAVTSP 239 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~-----~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~l~~~~~~~ 239 (400)
...+..+|+.++++...- ..+.......++..++++|+.... ...+.++|+.+.+- ..++....+ .
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~~~~p---~ 87 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRITGFTSP---R 87 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEECCSSE---E
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcCCCCCC---c
Confidence 467899999998876421 112223345566678999998653 25799999998875 334433222 2
Q ss_pred EEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCC----CceeeeEEEECCeEEEEcC-cCCCCCCCCeE
Q psy2979 240 AVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI----PRSGAAICALDSCIYVLGG-WHASTENTNRV 313 (400)
Q Consensus 240 ~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~----~r~~~~~~~~~~~iyv~GG-~~~~~~~~~~v 313 (400)
.++. -++++|+.... ...+.++|+.+.+-...-+... ...-..++..++++|+..- . .+.+
T Consensus 88 ~i~~~~~g~lyv~~~~-------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~------~~~v 154 (328)
T 3dsm_A 88 YIHFLSDEKAYVTQIW-------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSY------QNRI 154 (328)
T ss_dssp EEEEEETTEEEEEEBS-------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTT------CCEE
T ss_pred EEEEeCCCeEEEEECC-------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCC------CCEE
Confidence 3444 68899998744 2479999999887542212111 0022344447889999852 2 4689
Q ss_pred EEEECCCCeEEEccCCcCccCcceEEEE-CCEEEEEcCccCCCC----CCCeEEEEECCCCcEEEecCCCCCCCceeeEE
Q psy2979 314 ECYHIAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDG----YHDSIECYDVDNDSWEIMSHLPSARSWLGCVP 388 (400)
Q Consensus 314 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~----~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 388 (400)
.++|+.+++....-+. +.....++.- +|++|+......... ....|+++|+.+++....-.++....-.++++
T Consensus 155 ~viD~~t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~ 232 (328)
T 3dsm_A 155 LKIDTETDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL 232 (328)
T ss_dssp EEEETTTTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE
T ss_pred EEEECCCCeEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE
Confidence 9999999876542221 1111223222 689988764311111 13689999999987664434444444455666
Q ss_pred Eccccccc
Q psy2979 389 LQIHKSQF 396 (400)
Q Consensus 389 ~~~~~~~~ 396 (400)
-.+...++
T Consensus 233 ~~d~~~ly 240 (328)
T 3dsm_A 233 NGTRDTLY 240 (328)
T ss_dssp CTTSCEEE
T ss_pred ecCCCEEE
Confidence 54444443
No 43
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.63 E-value=0.0002 Score=65.56 Aligned_cols=230 Identities=13% Similarity=0.078 Sum_probs=135.0
Q ss_pred ceEEEEEcCCCc--eEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCC--cceeeeEEEEC
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKF--DFDVSGIAMLD 198 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~--~r~~~~~~~~~ 198 (400)
..+..+|+.+++ |..-. +.. ...+.+..++. +|+......++.+|+.+++ |......+. .+...+.+..+
T Consensus 113 g~l~a~d~~tG~~~W~~~~--~~~-~~~~p~~~~~~-v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~ 188 (376)
T 3q7m_A 113 AQVYALNTSDGTVAWQTKV--AGE-ALSRPVVSDGL-VLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAF 188 (376)
T ss_dssp SEEEEEETTTCCEEEEEEC--SSC-CCSCCEEETTE-EEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEET
T ss_pred CEEEEEECCCCCEEEEEeC--CCc-eEcCCEEECCE-EEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEEC
Confidence 478999998876 76422 211 11223445777 8887666789999998876 775443221 12223444557
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCCcc--------cccEEEEeCCEEEEEcCccccCCCCcceEEEE
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKLAV--------TSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY 268 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 268 (400)
+.+|+ |..+ ..+..+|+.++ .|+.-...+... .....+..++.+|+.+.. ..+.++
T Consensus 189 ~~v~~-g~~~-----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~--------g~l~~~ 254 (376)
T 3q7m_A 189 GAAVV-GGDN-----GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYN--------GNLTAL 254 (376)
T ss_dssp TEEEE-CCTT-----TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTT--------SCEEEE
T ss_pred CEEEE-EcCC-----CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecC--------cEEEEE
Confidence 88777 3222 36889999876 476543322211 123334568888886532 268999
Q ss_pred eCCCCc--eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEEccCCcCccCcceEEEECCE
Q psy2979 269 NPKVNQ--WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT--WEYKSPMKEKRYRPGIAVIDGK 344 (400)
Q Consensus 269 d~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~ 344 (400)
|+.+.+ |+.-. +. ....+..++.||+... ...+.+||+.+++ |+.-. ++ .......+..++.
T Consensus 255 d~~tG~~~w~~~~--~~---~~~~~~~~~~l~~~~~-------~g~l~~~d~~tG~~~w~~~~-~~-~~~~~~~~~~~~~ 320 (376)
T 3q7m_A 255 DLRSGQIMWKREL--GS---VNDFIVDGNRIYLVDQ-------NDRVMALTIDGGVTLWTQSD-LL-HRLLTSPVLYNGN 320 (376)
T ss_dssp ETTTCCEEEEECC--CC---EEEEEEETTEEEEEET-------TCCEEEEETTTCCEEEEECT-TT-TSCCCCCEEETTE
T ss_pred ECCCCcEEeeccC--CC---CCCceEECCEEEEEcC-------CCeEEEEECCCCcEEEeecc-cC-CCcccCCEEECCE
Confidence 987664 77532 11 2345566889998764 3479999998775 77531 11 2223344556899
Q ss_pred EEEEcCccCCCCCCCeEEEEECCCCc--EEEecCCCCCCCceeeEEEcccccc
Q psy2979 345 IYVLGGEEGWDGYHDSIECYDVDNDS--WEIMSHLPSARSWLGCVPLQIHKSQ 395 (400)
Q Consensus 345 lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~~~~ 395 (400)
||+.... ..+++||+.+++ |+.- ++........++.++.+|+
T Consensus 321 l~v~~~~-------g~l~~~d~~tG~~~~~~~--~~~~~~~~~~~~~~~~l~v 364 (376)
T 3q7m_A 321 LVVGDSE-------GYLHWINVEDGRFVAQQK--VDSSGFQTEPVAADGKLLI 364 (376)
T ss_dssp EEEECTT-------SEEEEEETTTCCEEEEEE--CCTTCBCSCCEEETTEEEE
T ss_pred EEEEeCC-------CeEEEEECCCCcEEEEEe--cCCCcceeCCEEECCEEEE
Confidence 9886532 468999999886 5542 3222233334444554443
No 44
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.55 E-value=1.3e-05 Score=68.70 Aligned_cols=184 Identities=13% Similarity=0.049 Sum_probs=121.2
Q ss_pred eeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 191 VSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 191 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
..++...++.+|+..|..+ .+++.++|+.+++=..--+++......+++..+++||+.... .+.++.||+
T Consensus 45 tqGL~~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~-------~~~v~v~D~ 114 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNG---RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK-------NGLGFVWNI 114 (262)
T ss_dssp EEEEEEETTEEEEEEEETT---EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS-------SSEEEEEET
T ss_pred cceEEEECCEEEEECCCCC---CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee-------CCEEEEEEC
Confidence 3556666899999998654 257899999999865555666655666788899999999766 358999999
Q ss_pred CCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-ccC--CcCccCcc-eEEEECCEEE
Q psy2979 271 KVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEY-KSP--MKEKRYRP-GIAVIDGKIY 346 (400)
Q Consensus 271 ~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~--~~~~~~~~-~~~~~~~~ly 346 (400)
.+.+-. ..++.+..+.+++.-++.+|+..| .+.++.+||++.+-.. ++- ...+.... .+...+|+||
T Consensus 115 ~t~~~~--~ti~~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~ly 185 (262)
T 3nol_A 115 RNLRQV--RSFNYDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIF 185 (262)
T ss_dssp TTCCEE--EEEECSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEE
T ss_pred ccCcEE--EEEECCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEE
Confidence 876643 223333355667766778888876 4689999999876332 221 11111111 2344599999
Q ss_pred EEcCccCCCCCCCeEEEEECCCCc---EEEecCCCC--------CCCceeeEEEcccccccccC
Q psy2979 347 VLGGEEGWDGYHDSIECYDVDNDS---WEIMSHLPS--------ARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 347 v~GG~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~--------~r~~~~~~~~~~~~~~~~~~ 399 (400)
+---. .+.|.+.||++++ |-.++.+.. .-.-.|.|...+..-+||=|
T Consensus 186 an~w~------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 186 ANVWQ------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEETT------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEcc------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 75432 4689999999986 444433321 12336677776666666644
No 45
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=98.50 E-value=1.4e-05 Score=73.53 Aligned_cols=247 Identities=15% Similarity=0.131 Sum_probs=132.2
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
+++++.|+.+ ..+..+|..+++....-... ..-.+++.. ++..+|+. .....+..+|+.+++....-....
T Consensus 2 ~~l~vs~~~d-----~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 74 (391)
T 1l0q_A 2 TFAYIANSES-----DNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS 74 (391)
T ss_dssp EEEEEEETTT-----TEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CEEEEEcCCC-----CEEEEEECCCCeEEEEeecC--CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence 4677777655 57889998887644322111 122344444 34325555 356789999998876543322222
Q ss_pred cceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcc
Q psy2979 188 DFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIE 263 (400)
Q Consensus 188 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 263 (400)
.-.+++.. ++.||+.|..+ ..+.+||+.+++....-.... .-.+++.. +..+|+.++. + .
T Consensus 75 --~v~~~~~spdg~~l~~~~~~~-----~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~---~----~ 138 (391)
T 1l0q_A 75 --SPQGVAVSPDGKQVYVTNMAS-----STLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNG---D----K 138 (391)
T ss_dssp --SEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETT---T----T
T ss_pred --CccceEECCCCCEEEEEECCC-----CEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCC---C----C
Confidence 22222222 34577765433 469999999886544322222 11233332 3457788766 3 4
Q ss_pred eEEEEeCCCCceeeccCCCCCceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE
Q psy2979 264 QVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI 341 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 341 (400)
.+..||..+.+....-..... ...++.. ++ .+|+.++. ...+..||+.+++....-.... ....+.+
T Consensus 139 ~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 207 (391)
T 1l0q_A 139 TVSVINTVTKAVINTVSVGRS--PKGIAVTPDGTKVYVANFD------SMSISVIDTVTNSVIDTVKVEA---APSGIAV 207 (391)
T ss_dssp EEEEEETTTTEEEEEEECCSS--EEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECSS---EEEEEEE
T ss_pred EEEEEECCCCcEEEEEecCCC--cceEEECCCCCEEEEEeCC------CCEEEEEECCCCeEEEEEecCC---CccceEE
Confidence 799999988775543322211 1223332 33 67677654 4689999999887554332211 1122233
Q ss_pred --CC-EEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEccccccc
Q psy2979 342 --DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQF 396 (400)
Q Consensus 342 --~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~ 396 (400)
++ .||+.+.. . ....|.+||+.+.+-.. .++....-.+++...+..+++
T Consensus 208 ~~~g~~l~~~~~~-~---~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~ 259 (391)
T 1l0q_A 208 NPEGTKAYVTNVD-K---YFNTVSMIDTGTNKITA--RIPVGPDPAGIAVTPDGKKVY 259 (391)
T ss_dssp CTTSSEEEEEEEC-S---SCCEEEEEETTTTEEEE--EEECCSSEEEEEECTTSSEEE
T ss_pred CCCCCEEEEEecC-c---CCCcEEEEECCCCeEEE--EEecCCCccEEEEccCCCEEE
Confidence 34 55555421 0 13579999998775332 223232333444444444443
No 46
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.47 E-value=7.8e-05 Score=63.21 Aligned_cols=181 Identities=12% Similarity=0.057 Sum_probs=121.5
Q ss_pred eeeEEEECCeEEEEEee---cCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc
Q psy2979 149 KHGLVVSGRNTIYCLDI---VDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE 225 (400)
Q Consensus 149 ~~~~~~~~~~~iyv~~~---~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 225 (400)
-+++...++. +|+... .+.+..+|+.+++-...-+++..-...+++..+++||++...+ +.+++||+.+.+
T Consensus 23 tqGL~~~~~~-LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~-----~~v~v~D~~tl~ 96 (243)
T 3mbr_X 23 TEGLFYLRGH-LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN-----HEGFVYDLATLT 96 (243)
T ss_dssp EEEEEEETTE-EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-----SEEEEEETTTTE
T ss_pred cccEEEECCE-EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC-----CEEEEEECCcCc
Confidence 3577777877 998833 3589999999998776666666666777888899999986543 679999998765
Q ss_pred eEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeec---cCCCCCc-eeeeEEEECCeEEEEc
Q psy2979 226 WSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL---APMLIPR-SGAAICALDSCIYVLG 301 (400)
Q Consensus 226 W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~r-~~~~~~~~~~~iyv~G 301 (400)
- +..++.+..+.+++.-++.+|+.-|. +.++.+||.+.+-..- ..-+.+. ..--+...+++||+--
T Consensus 97 ~--~~ti~~~~~Gwglt~dg~~L~vSdgs--------~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanv 166 (243)
T 3mbr_X 97 P--RARFRYPGEGWALTSDDSHLYMSDGT--------AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANV 166 (243)
T ss_dssp E--EEEEECSSCCCEEEECSSCEEEECSS--------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred E--EEEEeCCCCceEEeeCCCEEEEECCC--------CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEE
Confidence 3 33334344667888778899998664 5899999998764322 1112121 1123445589999655
Q ss_pred CcCCCCCCCCeEEEEECCCCe---EEEccCCcC--------ccCcceEEEE---CCEEEEEcCc
Q psy2979 302 GWHASTENTNRVECYHIAENT---WEYKSPMKE--------KRYRPGIAVI---DGKIYVLGGE 351 (400)
Q Consensus 302 G~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~--------~~~~~~~~~~---~~~lyv~GG~ 351 (400)
-. .+.+.+.||.+++ |..++.+.. .-......++ ++++||.|-.
T Consensus 167 w~------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 167 WL------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp TT------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred CC------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 33 6799999999986 555553321 1122334444 4788888854
No 47
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.42 E-value=0.00075 Score=59.04 Aligned_cols=238 Identities=9% Similarity=0.025 Sum_probs=129.3
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee-cCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI-VDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFV 201 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~-~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~i 201 (400)
..+..||+. +++..+........-++++.- ++. +|+... ...+..||+. ++............-.+++.. ++.+
T Consensus 36 ~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l 112 (299)
T 2z2n_A 36 NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDI 112 (299)
T ss_dssp TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCE
T ss_pred CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCE
Confidence 467888888 776654422122233445543 456 888744 5679999986 555544321112222333333 5788
Q ss_pred EEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC
Q psy2979 202 YAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP 280 (400)
Q Consensus 202 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~ 280 (400)
|+.... ...+.+||+ +++............-.+++.. ++.+|+.... ...+.+||+ +.+.....
T Consensus 113 ~v~~~~-----~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~-~g~~~~~~- 177 (299)
T 2z2n_A 113 WFTEMN-----GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ-------NNAIGRITE-SGDITEFK- 177 (299)
T ss_dssp EEEETT-----TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT-------TTEEEEECT-TCCEEEEE-
T ss_pred EEEecC-----CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC-------CCEEEEEcC-CCcEEEee-
Confidence 886532 246889999 6665544221111112233332 6789987543 247999999 67666542
Q ss_pred CCC-CceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCC
Q psy2979 281 MLI-PRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDG 356 (400)
Q Consensus 281 ~~~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~ 356 (400)
.+. ...-.+++.- ++.+|+.... ...+.+||+ ++++.... .+..........+ +|+||+....
T Consensus 178 ~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~----- 244 (299)
T 2z2n_A 178 IPTPASGPVGITKGNDDALWFVEII------GNKIGRITT-SGEITEFK-IPTPNARPHAITAGAGIDLWFTEWG----- 244 (299)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECSTTCEEEEETT-----
T ss_pred CCCCCCcceeEEECCCCCEEEEccC------CceEEEECC-CCcEEEEE-CCCCCCCceeEEECCCCCEEEeccC-----
Confidence 111 1112233333 5788887643 458999999 77766542 2222222333344 5788887532
Q ss_pred CCCeEEEEECCCCcEEEecCCCC-CCCceeeEEEcccccccc
Q psy2979 357 YHDSIECYDVDNDSWEIMSHLPS-ARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 357 ~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~~~~~~ 397 (400)
.+.|.+||+ +++..... ++. ...-.+++. .+..+++.
T Consensus 245 -~~~i~~~d~-~g~~~~~~-~~~~~~~~~~i~~-~~g~l~v~ 282 (299)
T 2z2n_A 245 -ANKIGRLTS-NNIIEEYP-IQIKSAEPHGICF-DGETIWFA 282 (299)
T ss_dssp -TTEEEEEET-TTEEEEEE-CSSSSCCEEEEEE-CSSCEEEE
T ss_pred -CceEEEECC-CCceEEEe-CCCCCCccceEEe-cCCCEEEE
Confidence 257899999 45555442 222 122344455 55444443
No 48
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.38 E-value=0.00089 Score=58.60 Aligned_cols=216 Identities=9% Similarity=0.051 Sum_probs=120.9
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee-cCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI-VDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFV 201 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~-~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~i 201 (400)
..+..||+. ++...+.........++++.. ++. +|+... ...+..||+. +++...........-.+++.. ++.+
T Consensus 41 ~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l 117 (300)
T 2qc5_A 41 NKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDI 117 (300)
T ss_dssp TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCE
T ss_pred CeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCE
Confidence 467888888 666654321111233445544 455 888744 5679999998 776644322111222333333 6788
Q ss_pred EEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc-cEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc
Q psy2979 202 YAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS-PAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA 279 (400)
Q Consensus 202 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~ 279 (400)
|+.... ...+.+||+. ++..... ++..... .+++. -++++|+.... ...+++||+ +.+.....
T Consensus 118 ~v~~~~-----~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~-------~~~i~~~~~-~g~~~~~~ 182 (300)
T 2qc5_A 118 WFTQLN-----GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQ-------NNSIGRITN-TGKLEEYP 182 (300)
T ss_dssp EEEETT-----TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT-------TTEEEEECT-TCCEEEEE
T ss_pred EEEccC-----CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEecC-------CCeEEEECC-CCcEEEee
Confidence 886432 2468899988 6655432 2211112 23333 35779987643 247999999 66665543
Q ss_pred CCCCC-ceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCC
Q psy2979 280 PMLIP-RSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWD 355 (400)
Q Consensus 280 ~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~ 355 (400)
++.. ..-.+++.- ++.+|+.... ...+.+||+ ++++.... .+.....+..... +|+||+....
T Consensus 183 -~~~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~---- 249 (300)
T 2qc5_A 183 -LPTNAAAPVGITSGNDGALWFVEIM------GNKIGRITT-TGEISEYD-IPTPNARPHAITAGKNSEIWFTEWG---- 249 (300)
T ss_dssp -CSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECSTTCEEEEETT----
T ss_pred -CCCCCCCcceEEECCCCCEEEEccC------CCEEEEEcC-CCcEEEEE-CCCCCCCceEEEECCCCCEEEeccC----
Confidence 2211 112233332 6789987643 457999999 56665542 2222222333344 5789887632
Q ss_pred CCCCeEEEEECCCCcEEEe
Q psy2979 356 GYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 356 ~~~~~v~~yd~~~~~W~~~ 374 (400)
.+.|.+||+ +++....
T Consensus 250 --~~~i~~~~~-~g~~~~~ 265 (300)
T 2qc5_A 250 --ANQIGRITN-DNTIQEY 265 (300)
T ss_dssp --TTEEEEECT-TSCEEEE
T ss_pred --CCeEEEECC-CCcEEEE
Confidence 257899999 5666654
No 49
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.33 E-value=9.1e-05 Score=63.39 Aligned_cols=180 Identities=8% Similarity=-0.065 Sum_probs=116.2
Q ss_pred eeEEEECCeEEEEEee---cCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCce
Q psy2979 150 HGLVVSGRNTIYCLDI---VDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEW 226 (400)
Q Consensus 150 ~~~~~~~~~~iyv~~~---~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 226 (400)
.++...++. +|+... .+.+..+|+.+++-...-+++..-...+++..+++||++...+ +.+.+||+.+.+-
T Consensus 46 qGL~~~~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~-----~~v~v~D~~t~~~ 119 (262)
T 3nol_A 46 EGFFYRNGY-FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN-----GLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEETTE-EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-----SEEEEEETTTCCE
T ss_pred ceEEEECCE-EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC-----CEEEEEECccCcE
Confidence 566666776 998833 2479999999998765555554445566788899999996533 6799999988764
Q ss_pred EEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCC---CCCcee-eeEEEECCeEEEEcC
Q psy2979 227 SYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM---LIPRSG-AAICALDSCIYVLGG 302 (400)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~-~~~~~~~~~iyv~GG 302 (400)
. ..++.+-.+.+++.-++.+|+.-|. +.++.+||.+.+-..--+. +.+... --+...+++||+---
T Consensus 120 ~--~ti~~~~eG~glt~dg~~L~~SdGs--------~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w 189 (262)
T 3nol_A 120 V--RSFNYDGEGWGLTHNDQYLIMSDGT--------PVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVW 189 (262)
T ss_dssp E--EEEECSSCCCCEEECSSCEEECCSS--------SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred E--EEEECCCCceEEecCCCEEEEECCC--------CeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEc
Confidence 3 2333334666777778889988654 5899999998764322111 111111 124445899997543
Q ss_pred cCCCCCCCCeEEEEECCCCe---EEEccCCcCc-------cCcceEEEE---CCEEEEEcCc
Q psy2979 303 WHASTENTNRVECYHIAENT---WEYKSPMKEK-------RYRPGIAVI---DGKIYVLGGE 351 (400)
Q Consensus 303 ~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~~-------~~~~~~~~~---~~~lyv~GG~ 351 (400)
. .+.+.+.||++++ |..++.+... -......++ ++++||.|-.
T Consensus 190 ~------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 190 Q------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp T------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred c------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 2 6799999999987 4444433211 122333444 4788888854
No 50
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.31 E-value=8.6e-05 Score=63.56 Aligned_cols=181 Identities=10% Similarity=0.047 Sum_probs=116.9
Q ss_pred eeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 191 VSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 191 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
.+++...++.||+..|..+. +.++|+.+++=..-- ++......+++..+++||+.... .+.++.||+
T Consensus 57 tqGL~~~~~~Ly~stG~~g~-----v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~-------~~~v~V~D~ 123 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQGT-----LRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT-------EGLLFTWSG 123 (268)
T ss_dssp EEEEEEETTEEEEEETTTTE-----EEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS-------SCEEEEEET
T ss_pred cceEEEECCEEEEEcCCCCE-----EEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc-------CCEEEEEEC
Confidence 35666668999999997643 889999998643333 55555556788889999999766 358999999
Q ss_pred CCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-cc--CCcCccCc-ceEEEECCEEE
Q psy2979 271 KVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEY-KS--PMKEKRYR-PGIAVIDGKIY 346 (400)
Q Consensus 271 ~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~--~~~~~~~~-~~~~~~~~~ly 346 (400)
.+.+-.. .++.+..+.+++.-++.+|+..| .+.+..+||++.+-.. +. ..+.+... -.+...+|+||
T Consensus 124 ~Tl~~~~--ti~~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~ly 194 (268)
T 3nok_A 124 MPPQRER--TTRYSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIY 194 (268)
T ss_dssp TTTEEEE--EEECSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEE
T ss_pred CcCcEEE--EEeCCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEE
Confidence 8765432 22333445677777889999876 5689999999876432 21 12222111 12334489999
Q ss_pred EEcCccCCCCCCCeEEEEECCCCc---EEEecCCC---------CCCCceeeEEEcccccccccC
Q psy2979 347 VLGGEEGWDGYHDSIECYDVDNDS---WEIMSHLP---------SARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 347 v~GG~~~~~~~~~~v~~yd~~~~~---W~~~~~~~---------~~r~~~~~~~~~~~~~~~~~~ 399 (400)
+---. .+.|.+.||++++ |-.++.+. ..-.--|+|...+..-+||=|
T Consensus 195 anvw~------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 195 ANIWH------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEETT------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEECC------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 64422 4689999999985 44444221 111235566665555565544
No 51
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.22 E-value=0.00027 Score=61.00 Aligned_cols=183 Identities=14% Similarity=0.114 Sum_probs=113.7
Q ss_pred eeEEEEC-CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 192 SGIAMLD-GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 192 ~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
++++..+ +.+|+..|..+ .+++..+|+.+++=...-+++......+.+..++++|+..-. .+.+..||+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~-------~~~v~viD~ 93 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL-------KNIGFIYDR 93 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT-------CSEEEEEET
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec-------CCEEEEEEC
Confidence 4555555 79999877432 367999999999755444455444555677789999999765 458999999
Q ss_pred CCCceeeccCCCCC-ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE-Ecc--CCcCccC-cceEEEECCEE
Q psy2979 271 KVNQWQDLAPMLIP-RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE-YKS--PMKEKRY-RPGIAVIDGKI 345 (400)
Q Consensus 271 ~~~~W~~~~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~--~~~~~~~-~~~~~~~~~~l 345 (400)
.+.+- +..++.+ ..+.+++.-++++|+..| .+.+..+|+.+.+-. .++ ..+.+.. ...+...++++
T Consensus 94 ~t~~v--~~~i~~g~~~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~l 164 (266)
T 2iwa_A 94 RTLSN--IKNFTHQMKDGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEV 164 (266)
T ss_dssp TTTEE--EEEEECCSSSCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEE
T ss_pred CCCcE--EEEEECCCCCeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEE
Confidence 87653 2222222 234455554678998765 568999999987632 222 1111111 11233348999
Q ss_pred EEEcCccCCCCCCCeEEEEECCCCc---EEEecCC---------CCCCCceeeEEEcccccccccC
Q psy2979 346 YVLGGEEGWDGYHDSIECYDVDNDS---WEIMSHL---------PSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 346 yv~GG~~~~~~~~~~v~~yd~~~~~---W~~~~~~---------~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
|+--.. .+.|.+.|+++++ |-.++.+ +..-.-.+++...++..+|+-|
T Consensus 165 yvn~~~------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 165 WANIWQ------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp EEEETT------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred EEecCC------CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 976543 4689999999875 3333321 1112236777776666666644
No 52
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=98.16 E-value=3e-06 Score=61.19 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=51.1
Q ss_pred eEEEE-CCeEEehhhHHHhhcCcccccc------------ceeecCCCCHHH---HHHHhh-----h---cccc---cCc
Q psy2979 20 VTLCV-DGSKFPAHRVVLAASSPYFKVL------------ETIRLPQLSPYF---LHDCVE-----Q---CAII---KNN 72 (400)
Q Consensus 20 v~l~~-~~~~~~~hr~vLaa~s~yf~~m------------~~vrl~~l~~~~---l~~~i~-----~---~~l~---~~~ 72 (400)
|+|+. ||++|++||.| |++|+||+.| ..|.|+.+++.. ++++.+ + +++- .+.
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 55665 89999999999 9999999987 258899999984 455666 2 3454 567
Q ss_pred hhHHHHHHHHHhcC
Q psy2979 73 PQCAQLVEEAKLFH 86 (400)
Q Consensus 73 ~~c~~~l~~a~~~~ 86 (400)
..+.+++.+|..++
T Consensus 83 ~~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 83 EIALELLMAANFLD 96 (97)
T ss_dssp GGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhC
Confidence 78899999997654
No 53
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=0.00025 Score=71.81 Aligned_cols=238 Identities=12% Similarity=0.072 Sum_probs=134.8
Q ss_pred EEEEEcCCCceEEccC---CcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCC-CcceeeeEEEE-CCE
Q psy2979 127 VEGFCVKTKVWKTLSC---LPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLK-FDFDVSGIAML-DGF 200 (400)
Q Consensus 127 ~~~yd~~~~~w~~~~~---~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~-~~~ 200 (400)
+..||+.++++..+.. ++. ..-.+++.- ++. |++......++.||+.+++++...... ....-.++..- ++.
T Consensus 385 l~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~ 462 (781)
T 3v9f_A 385 INVFENGKRVAIYNKENRELLS-NSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK 462 (781)
T ss_dssp EEEEETTEEEEECC-----CCC-SBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE
T ss_pred EEEEECCCCeEEEccCCCCCCC-cceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC
Confidence 5566666555544321 111 111233333 455 777654568999999999888776421 11122223332 568
Q ss_pred EEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC-c---ccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL-A---VTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 201 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~-~---~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
||+... ..+.+||+.+++|......+. . ..-.+++. -++.|++.... ..+.+||+.+.++
T Consensus 463 lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~--------~Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 463 IWIGTH-------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG--------GGVGIYTPDMQLV 527 (781)
T ss_dssp EEEEET-------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS--------SCEEEECTTCCEE
T ss_pred EEEEEC-------CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC--------CCEEEEeCCCCeE
Confidence 887432 348999999998877653321 1 11112222 36778875321 2589999999988
Q ss_pred eeccC---CCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeE-EEEECCCCeEEEccC---CcCccCcceEEEE-CCEEE
Q psy2979 276 QDLAP---MLIPRSGAAICA-LDSCIYVLGGWHASTENTNRV-ECYHIAENTWEYKSP---MKEKRYRPGIAVI-DGKIY 346 (400)
Q Consensus 276 ~~~~~---~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v-~~yd~~~~~W~~~~~---~~~~~~~~~~~~~-~~~ly 346 (400)
+.... ++.... .++.. .++.|++... .-+ .+||+.++++..... +|.... .+++.- +|.|+
T Consensus 528 ~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~--------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW 597 (781)
T 3v9f_A 528 RKFNQYEGFCSNTI-NQIYRSSKGQMWLATG--------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIW 597 (781)
T ss_dssp EEECTTTTCSCSCE-EEEEECTTSCEEEEET--------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEE
T ss_pred EEccCCCCCCCCee-EEEEECCCCCEEEEEC--------CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEE
Confidence 87652 222211 22222 2678887652 345 899999988876642 333222 223222 67888
Q ss_pred EEcCccCCCCCCCeEEEEECCCCcEEEec---CCCCCCCceeeEEEcccccccccC
Q psy2979 347 VLGGEEGWDGYHDSIECYDVDNDSWEIMS---HLPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 347 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
+.+. +.+.+|||.+++++... .++...+..+++..+....+++||
T Consensus 598 ~~t~--------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~ 645 (781)
T 3v9f_A 598 ASTN--------TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGS 645 (781)
T ss_dssp EECS--------SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEE
T ss_pred EEcC--------CceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEEC
Confidence 8753 25899999999888764 356555555555555444444443
No 54
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.15 E-value=0.00075 Score=58.26 Aligned_cols=214 Identities=18% Similarity=0.109 Sum_probs=115.2
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVY 202 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iy 202 (400)
..+..||+.+........ ......++++.. ++. +|+......+..||+............. ..-.+++.. ++.+|
T Consensus 46 ~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~ 122 (270)
T 1rwi_B 46 GRVVKLATGSTGTTVLPF-NGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVLPFDGL-NYPEGLAVDTQGAVY 122 (270)
T ss_dssp CEEEEECC-----EECCC-CSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEECCCCSC-SSEEEEEECTTCCEE
T ss_pred CcEEEecCCCcccceEee-CCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceEeeeecCCc-CCCcceEECCCCCEE
Confidence 467778876655443322 111222445554 456 8888556789999998776554432111 112233333 67888
Q ss_pred EEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCC
Q psy2979 203 AVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM 281 (400)
Q Consensus 203 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 281 (400)
+.... ...+.+||..+........... ..-.+++. -++++|+.... ...+.+||+.+..-......
T Consensus 123 v~~~~-----~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~-------~~~i~~~~~~~~~~~~~~~~ 189 (270)
T 1rwi_B 123 VADRG-----NNRVVKLAAGSKTQTVLPFTGL-NDPDGVAVDNSGNVYVTDTD-------NNRVVKLEAESNNQVVLPFT 189 (270)
T ss_dssp EEEGG-----GTEEEEECTTCCSCEECCCCSC-CSCCCEEECTTCCEEEEEGG-------GTEEEEECTTTCCEEECCCS
T ss_pred EEECC-----CCEEEEEECCCceeEeeccccC-CCceeEEEeCCCCEEEEECC-------CCEEEEEecCCCceEeeccc
Confidence 87532 2468888877665543322111 11123333 36789988654 24799999987664433211
Q ss_pred CCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCC
Q psy2979 282 LIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYH 358 (400)
Q Consensus 282 ~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~ 358 (400)
.. ..-.+++.- ++.+|+.... ...+.+||+.+..-..... .....+..+.+ +|+||+.... .
T Consensus 190 ~~-~~p~~i~~d~~g~l~v~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~p~~i~~~~~g~l~v~~~~------~ 254 (270)
T 1rwi_B 190 DI-TAPWGIAVDEAGTVYVTEHN------TNQVVKLLAGSTTSTVLPF--TGLNTPLAVAVDSDRTVYVADRG------N 254 (270)
T ss_dssp SC-CSEEEEEECTTCCEEEEETT------TSCEEEECTTCSCCEECCC--CSCSCEEEEEECTTCCEEEEEGG------G
T ss_pred CC-CCceEEEECCCCCEEEEECC------CCcEEEEcCCCCcceeecc--CCCCCceeEEECCCCCEEEEECC------C
Confidence 11 112233333 5689988753 4579999997765333221 11123334444 5789988654 3
Q ss_pred CeEEEEECCCC
Q psy2979 359 DSIECYDVDND 369 (400)
Q Consensus 359 ~~v~~yd~~~~ 369 (400)
+.|.+|++...
T Consensus 255 ~~v~~~~~~~~ 265 (270)
T 1rwi_B 255 DRVVKLTSLEH 265 (270)
T ss_dssp TEEEEECCCGG
T ss_pred CEEEEEcCCCc
Confidence 57888887543
No 55
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.15 E-value=0.0027 Score=55.43 Aligned_cols=193 Identities=9% Similarity=0.029 Sum_probs=109.2
Q ss_pred eeEEEE-CCeEEEEEee-cCEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCce
Q psy2979 150 HGLVVS-GRNTIYCLDI-VDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEW 226 (400)
Q Consensus 150 ~~~~~~-~~~~iyv~~~-~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 226 (400)
++++.- ++. +|+... ...+..||+. +++...........-.+++. -++.+|+..... ..+.+||+. ++.
T Consensus 18 ~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~~-g~~ 89 (299)
T 2z2n_A 18 YGITVSDKGK-VWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAA-----NKIGRITKK-GII 89 (299)
T ss_dssp EEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEECTT-SCE
T ss_pred cceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCC-----CeEEEECCC-CcE
Confidence 344443 455 888744 5689999998 77766542211122223333 267888874322 358899986 555
Q ss_pred EEccCCCC-cccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCc
Q psy2979 227 SYIEPMKL-AVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGW 303 (400)
Q Consensus 227 ~~~~~l~~-~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~ 303 (400)
.... ++. ...-.+++.. ++.+|+.... ...+.+||+ +.+..............+++.- ++.+|+....
T Consensus 90 ~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~-------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 90 KEYT-LPNPDSAPYGITEGPNGDIWFTEMN-------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ 160 (299)
T ss_dssp EEEE-CSSTTCCEEEEEECTTSCEEEEETT-------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred EEEe-CCCcCCCceeeEECCCCCEEEEecC-------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence 4443 221 1122233333 6889987644 237899999 5555544211111222333333 6789887632
Q ss_pred CCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 304 HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 304 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
...+.+||+ +++..... .+.....+....+ +|+||+.... ...+.+||+ ++++...
T Consensus 161 ------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~ 218 (299)
T 2z2n_A 161 ------NNAIGRITE-SGDITEFK-IPTPASGPVGITKGNDDALWFVEII------GNKIGRITT-SGEITEF 218 (299)
T ss_dssp ------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEE
T ss_pred ------CCEEEEEcC-CCcEEEee-CCCCCCcceeEEECCCCCEEEEccC------CceEEEECC-CCcEEEE
Confidence 458999999 77766542 1211222223333 5788887643 247899999 7777664
No 56
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=98.14 E-value=0.00064 Score=61.20 Aligned_cols=248 Identities=11% Similarity=0.067 Sum_probs=122.9
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee---cCEEEEEECCCCCeEEccCCCCcc-eeeeEEEE-C
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI---VDIVYVAASMHKILHSLGSLKFDF-DVSGIAML-D 198 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~---~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~-~ 198 (400)
-.++.+|..++++..+...........++.. ++. +|+... ...++.||..+++++.+....... .-..++.. +
T Consensus 18 i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd 96 (347)
T 3hfq_A 18 IYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA 96 (347)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT
T ss_pred EEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC
Confidence 3466778888887664432222222334444 556 887744 467899998777776655432111 11122222 4
Q ss_pred C-EEEEEcccCCCCCCCeEEEEeCC-CCceEEccCCCC------cc----cccEEEE-eCCEEEEEcCccccCCCCcceE
Q psy2979 199 G-FVYAVGGWDGSCRLDSVERYDPT-KNEWSYIEPMKL------AV----TSPAVVA-HEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 199 ~-~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~l~~------~~----~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v 265 (400)
+ .||+.+..+ ..+..||.. +++...+..++. .+ .-+.++. -++++|+.+.. .+.+
T Consensus 97 g~~l~~~~~~~-----~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-------~~~v 164 (347)
T 3hfq_A 97 RQLVYSANYHK-----GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-------SDKV 164 (347)
T ss_dssp TTEEEEEETTT-----TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-------TTEE
T ss_pred CCEEEEEeCCC-----CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-------CCEE
Confidence 4 577765322 457777774 334433322111 01 1112222 36678877654 2478
Q ss_pred EEEeCC-CCceeeccC--CCCC-ceeeeEEEECCe-EEEEcCcCCCCCCCCeEEEE--ECCCCeEEEccC---CcCc---
Q psy2979 266 QRYNPK-VNQWQDLAP--MLIP-RSGAAICALDSC-IYVLGGWHASTENTNRVECY--HIAENTWEYKSP---MKEK--- 332 (400)
Q Consensus 266 ~~yd~~-~~~W~~~~~--~~~~-r~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~y--d~~~~~W~~~~~---~~~~--- 332 (400)
..||.. +.+...+.. .+.. .-.+.+..-+++ +|+.+.. ...+..| +..++++..+.. .+..
T Consensus 165 ~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~------~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 238 (347)
T 3hfq_A 165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL------SSQIASLKYDTQTGAFTQLGIVKTIPADYTA 238 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------TTEEEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred EEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCC------CCEEEEEEecCCCCceEEeeeeeecCCCCCC
Confidence 888887 455544331 1111 111222222555 7776543 3345555 444677655432 2221
Q ss_pred cCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCC-CcEEEecCCCC-CCCceeeEEEcccccccc
Q psy2979 333 RYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDN-DSWEIMSHLPS-ARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 333 ~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~-~r~~~~~~~~~~~~~~~~ 397 (400)
......+.+ +| .||+.+.. .+.|.+||... ++++.+..++. ...-.++++-.+..++++
T Consensus 239 ~~~~~~i~~spdG~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 239 HNGAAAIRLSHDGHFLYVSNRG------YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp CCEEEEEEECTTSCEEEEEEET------TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEE
T ss_pred CCcceeEEECCCCCEEEEEeCC------CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEE
Confidence 122333334 45 47776543 25688888763 35666654443 222234444445544444
No 57
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.14 E-value=0.00094 Score=67.69 Aligned_cols=239 Identities=10% Similarity=0.133 Sum_probs=133.6
Q ss_pred eEEEEEcCCCceEEccCCc---c----cceeeeEEEECCeE-EEEEeecCEEEEEECCCCCeEEccCCCC--c-ceeeeE
Q psy2979 126 SVEGFCVKTKVWKTLSCLP---F----AISKHGLVVSGRNT-IYCLDIVDIVYVAASMHKILHSLGSLKF--D-FDVSGI 194 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~---~----~~~~~~~~~~~~~~-iyv~~~~~~~~~yd~~~~~w~~~~~~~~--~-r~~~~~ 194 (400)
-+..||+.++++......+ . ...-.+++.-.+.. |++......+.+||+.++++........ + ..-.++
T Consensus 378 Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i 457 (795)
T 4a2l_A 378 GLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAI 457 (795)
T ss_dssp CEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEE
T ss_pred CeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEE
Confidence 3566777777776554211 0 11223344333443 6665555789999999988877653211 1 111222
Q ss_pred EEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCC--CCccc-c--cEEE-EeCCEEEEEcCccccCCCCcceEEE
Q psy2979 195 AML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM--KLAVT-S--PAVV-AHEGMLYVTGGAILEDGDGIEQVQR 267 (400)
Q Consensus 195 ~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l--~~~~~-~--~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~ 267 (400)
..- ++.||+... ..+.+||+.+++|+..... +.... . .++. .-++.|++.... .+.+
T Consensus 458 ~~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~---------Gl~~ 521 (795)
T 4a2l_A 458 LPDGEGNLWLGTL-------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEE---------GLSV 521 (795)
T ss_dssp EECSSSCEEEEES-------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEESS---------CEEE
T ss_pred EECCCCCEEEEec-------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeCC---------ceEE
Confidence 222 567777532 2489999999999887532 11111 1 1222 236778875432 5899
Q ss_pred EeCCCCceeeccCC---C-CCc-eeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC---CcCccCcceE
Q psy2979 268 YNPKVNQWQDLAPM---L-IPR-SGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP---MKEKRYRPGI 338 (400)
Q Consensus 268 yd~~~~~W~~~~~~---~-~~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~~~~~~~ 338 (400)
||+.++++ ..... + .+. ...+++. .++.|++... .-+.+||+.++++..... +|... ...
T Consensus 522 ~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--------~Gl~~~d~~~~~~~~~~~~~gl~~~~--i~~ 590 (795)
T 4a2l_A 522 FKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR--------EGFYCFNEKDKQIKRYNTTNGLPNNV--VYG 590 (795)
T ss_dssp EEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES--------SCEEEEETTTTEEEEECGGGTCSCSC--EEE
T ss_pred EeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC--------CCceeECCCCCcEEEeCCCCCCchhh--eEE
Confidence 99988888 43211 1 111 1122222 2678887552 358999999999887642 33221 112
Q ss_pred EEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec---CCCCCCCceeeEEEcccccccccC
Q psy2979 339 AVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS---HLPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 339 ~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
... +|.|++.+. +.+.+|||++++++... .++...+...++..+....+++||
T Consensus 591 i~~d~~g~lWi~t~--------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~ 648 (795)
T 4a2l_A 591 ILEDSFGRLWLSTN--------RGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGG 648 (795)
T ss_dssp EEECTTSCEEEEET--------TEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEcC--------CceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEec
Confidence 223 578888763 36889999999988764 355555544444444444444443
No 58
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=98.12 E-value=0.00026 Score=64.84 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=121.4
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEe-ecCEEEEEECCCCCeEEccCCCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLD-IVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~-~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
..+++.++.+ ..+..+|..+++....-..+. .-.+++.. ++..+|+.. ....+..+|+.+++....-...
T Consensus 44 ~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~- 115 (391)
T 1l0q_A 44 TKVYVANAHS-----NDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG- 115 (391)
T ss_dssp SEEEEEEGGG-----TEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-
T ss_pred CEEEEECCCC-----CeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-
Confidence 3566666543 478899998877543322222 22344444 333255553 3478999999887654332221
Q ss_pred cceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcc
Q psy2979 188 DFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIE 263 (400)
Q Consensus 188 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 263 (400)
....+++.. ++.+|+.++.+ ..+..||+.+++....-...... ..++.. ++.+|+.++. + .
T Consensus 116 -~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~dg~~l~~~~~~---~----~ 180 (391)
T 1l0q_A 116 -KSPLGLALSPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVSVGRSP--KGIAVTPDGTKVYVANFD---S----M 180 (391)
T ss_dssp -SSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECCSSE--EEEEECTTSSEEEEEETT---T----T
T ss_pred -CCcceEEECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEecCCCc--ceEEECCCCCEEEEEeCC---C----C
Confidence 122233332 34677776543 46999999888765432222111 222222 3467777765 3 4
Q ss_pred eEEEEeCCCCceeeccCCCCCceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE
Q psy2979 264 QVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI 341 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 341 (400)
.+..||..+.+....-... .....++.. ++ .+|+.+. +.. ...+..||+.+.+-...- +.... ...+.+
T Consensus 181 ~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~-~~~---~~~v~~~d~~~~~~~~~~--~~~~~-~~~~~~ 251 (391)
T 1l0q_A 181 SISVIDTVTNSVIDTVKVE--AAPSGIAVNPEGTKAYVTNV-DKY---FNTVSMIDTGTNKITARI--PVGPD-PAGIAV 251 (391)
T ss_dssp EEEEEETTTTEEEEEEECS--SEEEEEEECTTSSEEEEEEE-CSS---CCEEEEEETTTTEEEEEE--ECCSS-EEEEEE
T ss_pred EEEEEECCCCeEEEEEecC--CCccceEECCCCCEEEEEec-CcC---CCcEEEEECCCCeEEEEE--ecCCC-ccEEEE
Confidence 7999999887654332221 122222222 44 4554442 111 468999999887643322 21111 222333
Q ss_pred ---CCEEEEEcCccCCCCCCCeEEEEECCCCcEE
Q psy2979 342 ---DGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 342 ---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 372 (400)
+..||+.++. + ..+.+||..+++-.
T Consensus 252 s~dg~~l~~s~~~-d-----~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 252 TPDGKKVYVALSF-X-----NTVSVIDTATNTIT 279 (391)
T ss_dssp CTTSSEEEEEETT-T-----TEEEEEETTTTEEE
T ss_pred ccCCCEEEEEcCC-C-----CEEEEEECCCCcEE
Confidence 3467777665 2 57889999886543
No 59
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=98.11 E-value=0.0033 Score=56.33 Aligned_cols=243 Identities=11% Similarity=-0.026 Sum_probs=129.3
Q ss_pred cceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCc--------ceeee
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFD--------FDVSG 193 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~--------r~~~~ 193 (400)
...+..+|+.+++....-.. ....++++.. ++..+|+. .....+..+|+.+++-...-+.... ..-..
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRE 145 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEE
T ss_pred CccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCce
Confidence 45788999988764432211 1122344444 33327776 3346899999988774332222111 11222
Q ss_pred EEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC-CCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 194 IAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP-MKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 194 ~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
++.. ++.+|+.+... ...+..||+.+.+-...-+ ........+...-++.+|+.... ..+..||+
T Consensus 146 ~~~s~dg~~l~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--------~~i~~~d~ 213 (353)
T 3vgz_A 146 LVADDATNTVYISGIGK----ESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD--------GELITIDT 213 (353)
T ss_dssp EEEETTTTEEEEEEESS----SCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTT--------SEEEEEET
T ss_pred EEECCCCCEEEEEecCC----CceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCC--------CeEEEEEC
Confidence 3332 45688776221 2469999998876443322 11111122222234567766442 37889999
Q ss_pred CCCceeeccCCCC--Cce-eeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE-C-C
Q psy2979 271 KVNQWQDLAPMLI--PRS-GAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-D-G 343 (400)
Q Consensus 271 ~~~~W~~~~~~~~--~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~-~ 343 (400)
.+.+-...-+.+. +.. ..+++.. ++.+|+.+.. ...+..||+.+++....-+.+.+ .+++.. + +
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~ 284 (353)
T 3vgz_A 214 ADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK------AAEVLVVDTRNGNILAKVAAPES---LAVLFNPARN 284 (353)
T ss_dssp TTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS------SSEEEEEETTTCCEEEEEECSSC---CCEEEETTTT
T ss_pred CCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC------CCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCC
Confidence 8776433222211 112 2223333 4457776643 46899999988875443333332 223222 4 4
Q ss_pred EEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcccccccc
Q psy2979 344 KIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 344 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
.+|+.+.. .+.|.+||+.+.+.... ++.+..-.++++..+..++++
T Consensus 285 ~l~v~~~~------~~~v~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~v 330 (353)
T 3vgz_A 285 EAYVTHRQ------AGKVSVIDAKSYKVVKT--FDTPTHPNSLALSADGKTLYV 330 (353)
T ss_dssp EEEEEETT------TTEEEEEETTTTEEEEE--EECCSEEEEEEECTTSCEEEE
T ss_pred EEEEEECC------CCeEEEEECCCCeEEEE--EecCCCCCeEEEcCCCCEEEE
Confidence 58887654 25799999988765443 333334455566556555554
No 60
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.10 E-value=0.004 Score=54.19 Aligned_cols=199 Identities=10% Similarity=0.086 Sum_probs=107.8
Q ss_pred eEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCC---C-cceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCC
Q psy2979 151 GLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLK---F-DFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPT 222 (400)
Q Consensus 151 ~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~---~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 222 (400)
++++. ++. +|+. .....+..||+.......++... . ...-.+++.. ++.+|+.+... ...+.+||+.
T Consensus 34 ~v~~~~~g~-l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~----~~~i~~~d~~ 108 (286)
T 1q7f_A 34 GVAVNAQND-IIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP----THQIQIYNQY 108 (286)
T ss_dssp EEEECTTCC-EEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG----GCEEEEECTT
T ss_pred eEEECCCCC-EEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC----CCEEEEECCC
Confidence 34443 455 7877 34567889998754433333211 0 1122344442 67899886321 2468899965
Q ss_pred CCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEE
Q psy2979 223 KNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVL 300 (400)
Q Consensus 223 ~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~ 300 (400)
...-..+.. +....-..++. -++++|+.... ...+.+||+.......+........-.+++.- ++.+|+.
T Consensus 109 g~~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 109 GQFVRKFGA-TILQHPRGVTVDNKGRIIVVECK-------VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp SCEEEEECT-TTCSCEEEEEECTTSCEEEEETT-------TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred CcEEEEecC-ccCCCceEEEEeCCCCEEEEECC-------CCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 544333322 11111123333 36789998654 24799999876654444211111111233333 6789988
Q ss_pred cCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 301 GGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 301 GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
+.. ...+.+||+.......+.... ....+...++ +|++|+.... . ...|.+||+....-..+
T Consensus 181 ~~~------~~~i~~~~~~g~~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~-~----~~~i~~~~~~g~~~~~~ 244 (286)
T 1q7f_A 181 DNR------AHCVKVFNYEGQYLRQIGGEG-ITNYPIGVGINSNGEILIADNH-N----NFNLTIFTQDGQLISAL 244 (286)
T ss_dssp EGG------GTEEEEEETTCCEEEEESCTT-TSCSEEEEEECTTCCEEEEECS-S----SCEEEEECTTSCEEEEE
T ss_pred ECC------CCEEEEEcCCCCEEEEEccCC-ccCCCcEEEECCCCCEEEEeCC-C----CEEEEEECCCCCEEEEE
Confidence 654 468999999766554443211 1122333344 6789998754 1 12799999876554444
No 61
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=98.08 E-value=0.0023 Score=57.04 Aligned_cols=259 Identities=11% Similarity=0.065 Sum_probs=125.3
Q ss_pred cEEEEEeccCCCcccceEEEEEcC-CCceEEccCCcccceeeeEEEE-CCeEEEEEeec-CEEEEEECC--CCCeEEccC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVK-TKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIV-DIVYVAASM--HKILHSLGS 184 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~-~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~-~~~~~yd~~--~~~w~~~~~ 184 (400)
+.+++.++.+ ..+..||.. +++...+..++....-.+++.. ++..+|+.... ..+..|+.. ++++..+..
T Consensus 5 ~~l~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 5 QTVYIASPES-----QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp EEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EEEEEeCCCC-----CeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccc
Confidence 5666664433 467778764 4444443333322223334443 33326665433 677777765 677776554
Q ss_pred CCCcceeeeEEEE-CC-EEEEEcccCCCCCCCeEEEEeCCCC-ceEEccCCCCcccccEEEE-e-CCEEEEEcCccccCC
Q psy2979 185 LKFDFDVSGIAML-DG-FVYAVGGWDGSCRLDSVERYDPTKN-EWSYIEPMKLAVTSPAVVA-H-EGMLYVTGGAILEDG 259 (400)
Q Consensus 185 ~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~l~~~~~~~~~~~-~-~~~iyv~GG~~~~~~ 259 (400)
++.+..-..++.. ++ .+|+.+..+ ..+..||+..+ +......++....-+.++. - +..+|+.+..
T Consensus 80 ~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----- 149 (343)
T 1ri6_A 80 SALPGSLTHISTDHQGQFVFVGSYNA-----GNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK----- 149 (343)
T ss_dssp EECSSCCSEEEECTTSSEEEEEETTT-----TEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-----
T ss_pred cccCCCCcEEEEcCCCCEEEEEecCC-----CeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCC-----
Confidence 4322222222222 33 566654322 45778887422 2222222221111222222 2 3467776633
Q ss_pred CCcceEEEEeCCC-Cceeecc----CCCCCceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECC--CCeEEE---cc
Q psy2979 260 DGIEQVQRYNPKV-NQWQDLA----PMLIPRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIA--ENTWEY---KS 327 (400)
Q Consensus 260 ~~~~~v~~yd~~~-~~W~~~~----~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~--~~~W~~---~~ 327 (400)
...+..||..+ .+...+. ..+....-..++.. ++ .+|+.+.. ...+..||.. ++++.. +.
T Consensus 150 --~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~------~~~i~~~~~~~~~g~~~~~~~~~ 221 (343)
T 1ri6_A 150 --QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL------NSSVDVWELKDPHGNIECVQTLD 221 (343)
T ss_dssp --GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT------TTEEEEEESSCTTSCCEEEEEEE
T ss_pred --CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC------CCEEEEEEecCCCCcEEEEeecc
Confidence 24789999877 5554322 11111111122222 44 47777643 4578888884 344432 23
Q ss_pred CCcCc---cCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECC--CCcEEEecCCCCCCCceeeEEEcccccccc
Q psy2979 328 PMKEK---RYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVD--NDSWEIMSHLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 328 ~~~~~---~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
..+.. ......+.+ ++ .||+.+.. ...+.+||+. +++++.+..++....-.+++.-.+..++++
T Consensus 222 ~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~------~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 222 MMPENFSDTRWAADIHITPDGRHLYACDRT------ASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIA 293 (343)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEETT------TTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEE
T ss_pred ccCccccccCCccceEECCCCCEEEEEecC------CCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEE
Confidence 33322 112223334 34 67766543 2468888887 566777755544333334444444444443
No 62
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.05 E-value=0.0043 Score=54.09 Aligned_cols=193 Identities=8% Similarity=0.048 Sum_probs=108.6
Q ss_pred eeEEEE-CCeEEEEEe-ecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCce
Q psy2979 150 HGLVVS-GRNTIYCLD-IVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEW 226 (400)
Q Consensus 150 ~~~~~~-~~~~iyv~~-~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 226 (400)
++++.- ++. +|+.. ....+..||+. ++............-.+++.. ++.+|+.... ...+.+||+. +++
T Consensus 23 ~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 23 YGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENG-----ANKIGKLSKK-GGF 94 (300)
T ss_dssp EEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCE
T ss_pred ceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecC-----CCeEEEECCC-CCe
Confidence 344443 456 88884 45789999998 776654321111122233332 5688886432 2468999998 766
Q ss_pred EEccCCCCcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCC-CceeeeEEE-ECCeEEEEcCc
Q psy2979 227 SYIEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI-PRSGAAICA-LDSCIYVLGGW 303 (400)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~-~~~~iyv~GG~ 303 (400)
...........-++++.. ++.+|+.... ...+.+||+. .+..... ++. ...-.+++. -++++|+....
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~ 165 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLN-------GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQ 165 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETT-------TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccC-------CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEecC
Confidence 544321111222233332 6889987653 2379999987 5554432 221 112223333 26788887643
Q ss_pred CCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 304 HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 304 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
...+.+||+ +++..... .+..........+ +|.||+.... ...+.+||+ ++++...
T Consensus 166 ------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 166 ------NNSIGRITN-TGKLEEYP-LPTNAAAPVGITSGNDGALWFVEIM------GNKIGRITT-TGEISEY 223 (300)
T ss_dssp ------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEE
T ss_pred ------CCeEEEECC-CCcEEEee-CCCCCCCcceEEECCCCCEEEEccC------CCEEEEEcC-CCcEEEE
Confidence 457999999 66666543 2222222333334 5789887532 246899999 6666655
No 63
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.03 E-value=0.0046 Score=53.28 Aligned_cols=191 Identities=12% Similarity=0.061 Sum_probs=118.1
Q ss_pred eeEEEEC-CeEEEEEee---cCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc
Q psy2979 150 HGLVVSG-RNTIYCLDI---VDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE 225 (400)
Q Consensus 150 ~~~~~~~-~~~iyv~~~---~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 225 (400)
++++..+ +. +|+... .+.+..+|+.+++-...-+++......+++..+++||+..-. .+.+.+||+.+.+
T Consensus 24 ~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~-----~~~v~viD~~t~~ 97 (266)
T 2iwa_A 24 QGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL-----KNIGFIYDRRTLS 97 (266)
T ss_dssp EEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT-----CSEEEEEETTTTE
T ss_pred ccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec-----CCEEEEEECCCCc
Confidence 6777666 55 898743 578999999999866544444434555677778999998543 2579999998764
Q ss_pred eEEccCCCCc-ccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceee-cc--CCCCCc-eeeeEEEECCeEEEE
Q psy2979 226 WSYIEPMKLA-VTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD-LA--PMLIPR-SGAAICALDSCIYVL 300 (400)
Q Consensus 226 W~~~~~l~~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-~~--~~~~~r-~~~~~~~~~~~iyv~ 300 (400)
= +..++.+ -.+.+++.-++.+|+..|. +.+..+|+.+.+-.. ++ .-+.+. .-..+...++++|+-
T Consensus 98 v--~~~i~~g~~~g~glt~Dg~~l~vs~gs--------~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn 167 (266)
T 2iwa_A 98 N--IKNFTHQMKDGWGLATDGKILYGSDGT--------SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWAN 167 (266)
T ss_dssp E--EEEEECCSSSCCEEEECSSSEEEECSS--------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred E--EEEEECCCCCeEEEEECCCEEEEECCC--------CeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEe
Confidence 3 3223322 3445666667789987653 589999998876332 22 111111 112333448899977
Q ss_pred cCcCCCCCCCCeEEEEECCCCe---EEEccCCcC--------ccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEEC
Q psy2979 301 GGWHASTENTNRVECYHIAENT---WEYKSPMKE--------KRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 301 GG~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~--------~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~ 366 (400)
-.. .+.+.+.|+.+++ |..++.+.. ........++ ++++||.|+. -+.+++.+.
T Consensus 168 ~~~------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~------~~~v~~i~l 235 (266)
T 2iwa_A 168 IWQ------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL------WPKLFEIKL 235 (266)
T ss_dssp ETT------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT------CSEEEEEEE
T ss_pred cCC------CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC------CCeEEEEEE
Confidence 543 5799999999986 443332100 0112233333 4689999976 356666665
Q ss_pred CC
Q psy2979 367 DN 368 (400)
Q Consensus 367 ~~ 368 (400)
..
T Consensus 236 ~~ 237 (266)
T 2iwa_A 236 HL 237 (266)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 64
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=97.98 E-value=0.001 Score=59.34 Aligned_cols=233 Identities=12% Similarity=0.094 Sum_probs=119.6
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee-cCEEEEEECCCCCe-E-EccCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI-VDIVYVAASMHKIL-H-SLGSL 185 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~-~~~~~~yd~~~~~w-~-~~~~~ 185 (400)
+.+++....+ ..+..+|+.+++.......+.... +++.. ++..+|+... ...++.+|+.+++. . .+...
T Consensus 10 ~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 10 NFGIVVEQHL-----RRISFFSTDTLEILNQITLGYDFV--DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp CEEEEEEGGG-----TEEEEEETTTCCEEEEEECCCCEE--EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred CEEEEEecCC-----CeEEEEeCcccceeeeEEccCCcc--eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 5667765543 588899999988765433332212 44443 3433776633 56899999988774 2 22221
Q ss_pred CCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe-CC-EEEEEcCccccCCCC
Q psy2979 186 KFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EG-MLYVTGGAILEDGDG 261 (400)
Q Consensus 186 ~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~ 261 (400)
..+.. +++.. ++.+| .+... .....+..||+.+++....-+.. ...+.++.. ++ .+|+.+.. +
T Consensus 83 ~~~~~--~~~~s~dg~~l~-~~~~~--~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~---~--- 149 (331)
T 3u4y_A 83 QSSMA--DVDITPDDQFAV-TVTGL--NHPFNMQSYSFLKNKFISTIPIP--YDAVGIAISPNGNGLILIDRS---S--- 149 (331)
T ss_dssp SSCCC--CEEECTTSSEEE-ECCCS--SSSCEEEEEETTTTEEEEEEECC--TTEEEEEECTTSSCEEEEEET---T---
T ss_pred CCCcc--ceEECCCCCEEE-EecCC--CCcccEEEEECCCCCeEEEEECC--CCccceEECCCCCEEEEEecC---C---
Confidence 22221 12222 34566 33221 11237999999988754432221 112333332 44 58877554 2
Q ss_pred cce-EEEEeCCCCc-eeec--cCCCCCceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCCCeE-EEccCCcCccC
Q psy2979 262 IEQ-VQRYNPKVNQ-WQDL--APMLIPRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIAENTW-EYKSPMKEKRY 334 (400)
Q Consensus 262 ~~~-v~~yd~~~~~-W~~~--~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~ 334 (400)
.. +..|+...+. .... ..++.......++.. ++ .+|+.+.. ...+..||+.+++. ..+..++....
T Consensus 150 -~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~------~~~v~v~d~~~~~~~~~~~~~~~~~~ 222 (331)
T 3u4y_A 150 -ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI------GNSIGILETQNPENITLLNAVGTNNL 222 (331)
T ss_dssp -TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT------TTEEEEEECSSTTSCEEEEEEECSSC
T ss_pred -CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC------CCeEEEEECCCCcccceeeeccCCCC
Confidence 24 6666654322 1111 111111111223322 45 47777644 46899999987764 11222222222
Q ss_pred cceEEEE-CCE-EEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 335 RPGIAVI-DGK-IYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 335 ~~~~~~~-~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
...++.. +|+ +|+.... .+.|.+||+++++.+.+.
T Consensus 223 ~~~~~~spdg~~l~v~~~~------~~~i~~~d~~~~~~~~~~ 259 (331)
T 3u4y_A 223 PGTIVVSRDGSTVYVLTES------TVDVFNFNQLSGTLSFVK 259 (331)
T ss_dssp CCCEEECTTSSEEEEECSS------EEEEEEEETTTTEEEEEE
T ss_pred CceEEECCCCCEEEEEEcC------CCEEEEEECCCCceeeec
Confidence 2223222 454 7776543 246899999998875553
No 65
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.95 E-value=0.00038 Score=64.72 Aligned_cols=245 Identities=11% Similarity=0.015 Sum_probs=127.6
Q ss_pred eEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCC---CcceeeeEEEE--C
Q psy2979 126 SVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLK---FDFDVSGIAML--D 198 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~---~~r~~~~~~~~--~ 198 (400)
.++.+|+.++++..+..++......+++.. ++. +++. .....+..+|+.+++.....+.. .+........+ +
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH 180 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG
T ss_pred EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC
Confidence 677788877766555444333322344444 344 6665 33346999999988766533321 11111112222 6
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCcee
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 276 (400)
+.+++.|+.+ ..+..||+.+++....-.... ..-.+++.. ++.+|+.++. + ..+..||+.+.+..
T Consensus 181 ~~~~~s~~~d-----~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~---~----~~i~~~d~~~~~~~ 247 (433)
T 3bws_A 181 NELWVSQMQA-----NAVHVFDLKTLAYKATVDLTG-KWSKILLYDPIRDLVYCSNWI---S----EDISVIDRKTKLEI 247 (433)
T ss_dssp TEEEEEEGGG-----TEEEEEETTTCCEEEEEECSS-SSEEEEEEETTTTEEEEEETT---T----TEEEEEETTTTEEE
T ss_pred CEEEEEECCC-----CEEEEEECCCceEEEEEcCCC-CCeeEEEEcCCCCEEEEEecC---C----CcEEEEECCCCcEE
Confidence 7888887754 468999998765433211111 111122222 4567777765 3 37999999877654
Q ss_pred eccCCCCCceeeeEEEE-CCeEEEEcCcCCCCC--CCCeEEEEECCCCeEEEccCCcCccCcceEEEE--C-CEEEEEcC
Q psy2979 277 DLAPMLIPRSGAAICAL-DSCIYVLGGWHASTE--NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--D-GKIYVLGG 350 (400)
Q Consensus 277 ~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~--~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~-~~lyv~GG 350 (400)
..-+ ......+++.. +++.+++++...... ....+..||+.+++-......+. ....+.+ + +.+|+.++
T Consensus 248 ~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~ 322 (433)
T 3bws_A 248 RKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDM 322 (433)
T ss_dssp EECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---CEEEEEECSSTTEEEEEET
T ss_pred EEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---CcceEEECCCCCEEEEEec
Confidence 3322 22222333332 554444444322111 03589999998886543321111 1122233 3 46888876
Q ss_pred ccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcccccccc
Q psy2979 351 EEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 351 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
. ...+.+||+.+++-.. .++....-.+++.-.+..++++
T Consensus 323 ~------~~~v~v~d~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~ 361 (433)
T 3bws_A 323 C------CSKIEVYDLKEKKVQK--SIPVFDKPNTIALSPDGKYLYV 361 (433)
T ss_dssp T------TTEEEEEETTTTEEEE--EEECSSSEEEEEECTTSSEEEE
T ss_pred C------CCEEEEEECCCCcEEE--EecCCCCCCeEEEcCCCCEEEE
Confidence 5 2478999998765332 2232323334444444444443
No 66
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.93 E-value=0.0062 Score=54.16 Aligned_cols=244 Identities=9% Similarity=-0.001 Sum_probs=122.0
Q ss_pred ceEEEEEcC--CCceEEccCCcccceeeeEEEE-CCeEEEEEee-cCEEEEEECCCCC-eEEccCCCCcceeeeEEEE-C
Q psy2979 125 RSVEGFCVK--TKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI-VDIVYVAASMHKI-LHSLGSLKFDFDVSGIAML-D 198 (400)
Q Consensus 125 ~~~~~yd~~--~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~-~~~~~~yd~~~~~-w~~~~~~~~~r~~~~~~~~-~ 198 (400)
..+..|+.. ++++..+..++.......++.. ++..+|+... ...+..||...+. .......+....-..++.. +
T Consensus 60 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d 139 (343)
T 1ri6_A 60 FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPD 139 (343)
T ss_dssp TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTT
T ss_pred CeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCC
Confidence 467777765 6677655443322222334443 3332555533 4567888873221 2222222211112222222 3
Q ss_pred -CEEEEEcccCCCCCCCeEEEEeCCC-CceEEcc----CCCCcccccEEEE-eCC-EEEEEcCccccCCCCcceEEEEeC
Q psy2979 199 -GFVYAVGGWDGSCRLDSVERYDPTK-NEWSYIE----PMKLAVTSPAVVA-HEG-MLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 199 -~~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~----~l~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
+.+|+.+..+ ..+..||..+ ++..... ..+....-..++. -++ .+|+.+.. ...+..||.
T Consensus 140 g~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-------~~~i~~~~~ 207 (343)
T 1ri6_A 140 NRTLWVPALKQ-----DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-------NSSVDVWEL 207 (343)
T ss_dssp SSEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-------TTEEEEEES
T ss_pred CCEEEEecCCC-----CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC-------CCEEEEEEe
Confidence 3677765222 4688899887 6665432 1121111112222 244 57777654 247888887
Q ss_pred C--CCceee---ccCCCCC---ceee-eEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECC--CCeEEEccCCcCccCcce
Q psy2979 271 K--VNQWQD---LAPMLIP---RSGA-AICAL-DS-CIYVLGGWHASTENTNRVECYHIA--ENTWEYKSPMKEKRYRPG 337 (400)
Q Consensus 271 ~--~~~W~~---~~~~~~~---r~~~-~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~~~~~~ 337 (400)
. +..+.. +..++.. .... .++.. ++ .+|+.+.. ...+..||.. ++++..+...+.... ..
T Consensus 208 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~------~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~ 280 (343)
T 1ri6_A 208 KDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT------ASLITVFSVSEDGSVLSKEGFQPTETQ-PR 280 (343)
T ss_dssp SCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT------TTEEEEEEECTTSCCEEEEEEEECSSS-CC
T ss_pred cCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC------CCEEEEEEEcCCCCceEEeeeecCCCc-cc
Confidence 4 344432 2223322 1111 22222 34 56666543 4578888877 556766655443333 22
Q ss_pred EEEE--CC-EEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcc
Q psy2979 338 IAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQI 391 (400)
Q Consensus 338 ~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 391 (400)
.+.+ ++ .||+.++. ++ .-.+|.+|+++++++.+..++.+..-.++++.++
T Consensus 281 ~~~~s~dg~~l~~~~~~-~~---~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~ 333 (343)
T 1ri6_A 281 GFNVDHSGKYLIAAGQK-SH---HISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH 333 (343)
T ss_dssp CEEECTTSSEEEEECTT-TC---EEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEE
T ss_pred eEEECCCCCEEEEecCC-CC---eEEEEEEcCCCceeeEccccccCCCCeeEEEEcc
Confidence 3333 34 46666543 21 2234555888999999887776655566666544
No 67
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=97.92 E-value=9.8e-07 Score=77.68 Aligned_cols=90 Identities=22% Similarity=0.399 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHhcCceeceE-------EEECCeEEehhhHHHhhcCcccc------------ccceeecCCCCHHHHHHH
Q psy2979 2 KMVLTGFNEARKNNEFCDVT-------LCVDGSKFPAHRVVLAASSPYFK------------VLETIRLPQLSPYFLHDC 62 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~-------l~~~~~~~~~hr~vLaa~s~yf~------------~m~~vrl~~l~~~~l~~~ 62 (400)
++|..+|.++.+++.|.++. |..|+..++.+..|+.|+..|.+ +|++|||+.|++++|.+.
T Consensus 165 ~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~~~~~r~~~~~~ll~~VRf~l~~~~~L~~~ 244 (279)
T 3i3n_A 165 DMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQMKPTYLTRH 244 (279)
T ss_dssp HHHHHTHHHHTTSSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHHHHHHTTHHHHTTTHHHHHTTSCGGGSCHHHHHHT
T ss_pred HHHHHHHHHHhcCcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 46788999999999999884 56677788888888888777653 679999999999999999
Q ss_pred hhhcccccCchhHHHHHHHHHhcCCCccc
Q psy2979 63 VEQCAIIKNNPQCAQLVEEAKLFHLLPDR 91 (400)
Q Consensus 63 i~~~~l~~~~~~c~~~l~~a~~~~~~~~~ 91 (400)
+.+++++..++.|++++.+|.++|..+..
T Consensus 245 v~~~~l~~~~~~c~~~l~ea~~~~~~~~e 273 (279)
T 3i3n_A 245 VKPERLVANNEVCVKLVADAVERHALRAE 273 (279)
T ss_dssp TTTSHHHHTCHHHHHHHHHHHHHHHHTTC
T ss_pred hhccchhcCCHHHHHHHHHHHHhccCchh
Confidence 99999999999999999999999987653
No 68
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.90 E-value=0.002 Score=55.49 Aligned_cols=191 Identities=16% Similarity=0.131 Sum_probs=103.9
Q ss_pred eeEEEE-CCeEEEE-E-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCc
Q psy2979 150 HGLVVS-GRNTIYC-L-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNE 225 (400)
Q Consensus 150 ~~~~~~-~~~~iyv-~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 225 (400)
++++.. ++. +|+ . .....+..+|+.+........... ..-.+++.. ++.+|+... . ..+.+||+.++.
T Consensus 27 ~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~-~-----~~i~~~d~~~~~ 98 (270)
T 1rwi_B 27 SGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDF-N-----NRVVTLAAGSNN 98 (270)
T ss_dssp EEEEECTTCC-EEEEECSSSCEEEEECC-----EECCCCSC-CSCCCEEECTTCCEEEEET-T-----TEEEEECTTCSC
T ss_pred cceEECCCCC-EEEEccCCCCcEEEecCCCcccceEeeCCc-CCcceeEECCCCCEEEEcC-C-----CEEEEEeCCCce
Confidence 344443 455 888 6 445678889887765544332111 112233333 567888754 2 468999998876
Q ss_pred eEEccCCCCcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCc
Q psy2979 226 WSYIEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGW 303 (400)
Q Consensus 226 W~~~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~ 303 (400)
......... ..-.+++.. ++.+|+.... ...+.+||..+........... ..-.+++.- ++.+|+....
T Consensus 99 ~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~-------~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~ 169 (270)
T 1rwi_B 99 QTVLPFDGL-NYPEGLAVDTQGAVYVADRG-------NNRVVKLAAGSKTQTVLPFTGL-NDPDGVAVDNSGNVYVTDTD 169 (270)
T ss_dssp CEECCCCSC-SSEEEEEECTTCCEEEEEGG-------GTEEEEECTTCCSCEECCCCSC-CSCCCEEECTTCCEEEEEGG
T ss_pred EeeeecCCc-CCCcceEECCCCCEEEEECC-------CCEEEEEECCCceeEeeccccC-CCceeEEEeCCCCEEEEECC
Confidence 554432111 111233332 6789988654 2478999877665543321111 111233333 6789988653
Q ss_pred CCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 304 HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 304 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
...+.+||+.+..-...... ....+...++ +|.||+.... .+.|.+||+.+..-
T Consensus 170 ------~~~i~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~------~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 170 ------NNRVVKLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHN------TNQVVKLLAGSTTS 225 (270)
T ss_dssp ------GTEEEEECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETT------TSCEEEECTTCSCC
T ss_pred ------CCEEEEEecCCCceEeeccc--CCCCceEEEECCCCCEEEEECC------CCcEEEEcCCCCcc
Confidence 45899999987764443211 1122333444 5689987643 24689999977643
No 69
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.81 E-value=0.0095 Score=53.25 Aligned_cols=201 Identities=9% Similarity=0.049 Sum_probs=104.5
Q ss_pred cCEEEEEECCCCCeEEccCCCCcceeeeEEEE-C-CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc-------
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDFDVSGIAML-D-GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV------- 236 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~------- 236 (400)
...++.+|+.+++....-+.. ..-.+++.. + +.+|+.++.+ ..+..||+.+++-...-+.+...
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 140 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHND--LKPFGATINNTTQTLWFGNTVN-----SAVTAIDAKTGEVKGRLVLDDRKRTEEVRP 140 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEES--SCCCSEEEETTTTEEEEEETTT-----TEEEEEETTTCCEEEEEESCCCCCCSSCCC
T ss_pred CccEEEEcCCCCeEEEEEecC--CCcceEEECCCCCEEEEEecCC-----CEEEEEeCCCCeeEEEEecCCCccccccCC
Confidence 457899999887644322221 112233333 3 4688876543 47899999988643322222111
Q ss_pred -cccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE-ECC-eEEEEcCcCCCCCCCC
Q psy2979 237 -TSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA-LDS-CIYVLGGWHASTENTN 311 (400)
Q Consensus 237 -~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~ 311 (400)
.-..++. -++.+|+.+.. + ...++.||+.+.+-...-+.... ....++. -++ .+|+... ..
T Consensus 141 ~~~~~~~~s~dg~~l~~~~~~---~---~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~-------~~ 206 (353)
T 3vgz_A 141 LQPRELVADDATNTVYISGIG---K---ESVIWVVDGGNIKLKTAIQNTGK-MSTGLALDSEGKRLYTTNA-------DG 206 (353)
T ss_dssp CEEEEEEEETTTTEEEEEEES---S---SCEEEEEETTTTEEEEEECCCCT-TCCCCEEETTTTEEEEECT-------TS
T ss_pred CCCceEEECCCCCEEEEEecC---C---CceEEEEcCCCCceEEEecCCCC-ccceEEECCCCCEEEEEcC-------CC
Confidence 0122333 24568887622 1 23799999987764332221111 1122222 244 5666543 35
Q ss_pred eEEEEECCCCeEEEccCCc-C-ccCcce-EEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceee
Q psy2979 312 RVECYHIAENTWEYKSPMK-E-KRYRPG-IAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGC 386 (400)
Q Consensus 312 ~v~~yd~~~~~W~~~~~~~-~-~~~~~~-~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~ 386 (400)
.+..||+.+++-...-..+ . +..... ++.. ++.+|+.... .+.+++||+.+++....-..+.+ .++
T Consensus 207 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~---~~~ 277 (353)
T 3vgz_A 207 ELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK------AAEVLVVDTRNGNILAKVAAPES---LAV 277 (353)
T ss_dssp EEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS------SSEEEEEETTTCCEEEEEECSSC---CCE
T ss_pred eEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC------CCEEEEEECCCCcEEEEEEcCCC---ceE
Confidence 7889999888644322221 1 122222 2322 4567776543 35799999988876544334433 345
Q ss_pred EEEccccccc
Q psy2979 387 VPLQIHKSQF 396 (400)
Q Consensus 387 ~~~~~~~~~~ 396 (400)
+...+..+++
T Consensus 278 ~~s~dg~~l~ 287 (353)
T 3vgz_A 278 LFNPARNEAY 287 (353)
T ss_dssp EEETTTTEEE
T ss_pred EECCCCCEEE
Confidence 5555544443
No 70
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.80 E-value=0.0033 Score=63.55 Aligned_cols=208 Identities=12% Similarity=0.124 Sum_probs=119.4
Q ss_pred eEEEEEcCCCceEEccCCc-ccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCC----cceeeeEEEE-C
Q psy2979 126 SVEGFCVKTKVWKTLSCLP-FAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKF----DFDVSGIAML-D 198 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~-~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~----~r~~~~~~~~-~ 198 (400)
-+..||+.++++..+.... ....-.+++.- ++. |++... ..+++||+.+++|......+. ...-.++..- +
T Consensus 428 Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~ 505 (781)
T 3v9f_A 428 NISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSE 505 (781)
T ss_dssp EEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTT
T ss_pred CEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCC
Confidence 3556677777766654211 11112233333 445 777654 789999999998876653321 1111122222 5
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccC---CCCcccccEEEE-eCCEEEEEcCccccCCCCcceE-EEEeCCCC
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP---MKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQV-QRYNPKVN 273 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v-~~yd~~~~ 273 (400)
+.|++... . ..+.+||+.+++++.... ++.... .+++. -++.|++.... .+ .+||+.++
T Consensus 506 g~lWigt~-~-----~Gl~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~~---------Glv~~~d~~~~ 569 (781)
T 3v9f_A 506 GRFWIGTF-G-----GGVGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATGE---------GLVCFPSARNF 569 (781)
T ss_dssp CCEEEEES-S-----SCEEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEETT---------EEEEESCTTTC
T ss_pred CCEEEEEc-C-----CCEEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEECC---------CceEEECCCCC
Confidence 67777431 1 238899999999887653 222111 12222 36778875332 46 99999998
Q ss_pred ceeecc---CCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC---CcCccCcceEEEE--CCE
Q psy2979 274 QWQDLA---PMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP---MKEKRYRPGIAVI--DGK 344 (400)
Q Consensus 274 ~W~~~~---~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~~~~~~~~~~--~~~ 344 (400)
++.... .++.... .+++.- +|.|++.+ .+-+.+|||.++++..... ++.......++.. +|+
T Consensus 570 ~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t--------~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~ 640 (781)
T 3v9f_A 570 DYQVFQRKEGLPNTHI-RAISEDKNGNIWAST--------NTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGL 640 (781)
T ss_dssp CCEEECGGGTCSCCCC-CEEEECSSSCEEEEC--------SSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSC
T ss_pred cEEEccccCCCCCceE-EEEEECCCCCEEEEc--------CCceEEEECCCCceEEecccCCccccccccCceEECCCCE
Confidence 877654 3443322 233333 67888876 3468999999999887642 4433333333333 677
Q ss_pred EEEEcCccCCCCCCCeEEEEECCC
Q psy2979 345 IYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 345 lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
||+-| . +.+..|||+.
T Consensus 641 l~~g~-~-------~Gl~~f~p~~ 656 (781)
T 3v9f_A 641 IYFGS-I-------NGLCFFNPDI 656 (781)
T ss_dssp EEEEE-T-------TEEEEECSCC
T ss_pred EEEEC-C-------CceEEEChhh
Confidence 77644 3 3567888864
No 71
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=97.80 E-value=0.014 Score=50.59 Aligned_cols=217 Identities=10% Similarity=0.078 Sum_probs=113.6
Q ss_pred ceEEEEEcCCCceEEccCCc----ccceeeeEEEE--CCeEEEEEee--cCEEEEEECCCCCeEEccCCCCcceeeeEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLP----FAISKHGLVVS--GRNTIYCLDI--VDIVYVAASMHKILHSLGSLKFDFDVSGIAM 196 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~----~~~~~~~~~~~--~~~~iyv~~~--~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~ 196 (400)
..+..||+.......+.... .....+++++. ++. +|+... ...+..||+.......+..... ..-.+++.
T Consensus 51 ~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~-~~~~~i~~ 128 (286)
T 1q7f_A 51 HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSPTHQIQIYNQYGQFVRKFGATIL-QHPRGVTV 128 (286)
T ss_dssp TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGGGCEEEEECTTSCEEEEECTTTC-SCEEEEEE
T ss_pred CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCCCCCEEEEECCCCcEEEEecCccC-CCceEEEE
Confidence 46788887744333332211 11223455553 556 888853 6789999965443333322111 11122333
Q ss_pred E-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 197 L-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 197 ~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
. ++.+|+..... ..+.+||+..+....+........-.+++. -++.+|+.+.. ...+.+||+....
T Consensus 129 ~~~g~l~v~~~~~-----~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-------~~~i~~~~~~g~~ 196 (286)
T 1q7f_A 129 DNKGRIIVVECKV-----MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-------AHCVKVFNYEGQY 196 (286)
T ss_dssp CTTSCEEEEETTT-----TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG-------GTEEEEEETTCCE
T ss_pred eCCCCEEEEECCC-----CEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC-------CCEEEEEcCCCCE
Confidence 2 67888875422 468999987654444421111111122333 36889998654 3479999987665
Q ss_pred eeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCC-eEEEEECCCCeEEEccCCcCccCcceEEEE-CCEEEEEcCc
Q psy2979 275 WQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTN-RVECYHIAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGE 351 (400)
Q Consensus 275 W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~-~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~ 351 (400)
...+..-.....-.+++.- ++.+|+.+.. .+ .+.+||+....-..+..........+++.- +|++|+.. .
T Consensus 197 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~------~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~-~ 269 (286)
T 1q7f_A 197 LRQIGGEGITNYPIGVGINSNGEILIADNH------NNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLAS-K 269 (286)
T ss_dssp EEEESCTTTSCSEEEEEECTTCCEEEEECS------SSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEE-T
T ss_pred EEEEccCCccCCCcEEEECCCCCEEEEeCC------CCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEEC-C
Confidence 4444321100111233332 6789988754 33 899999876544443321111111223332 78999984 2
Q ss_pred cCCCCCCCeEEEEECCC
Q psy2979 352 EGWDGYHDSIECYDVDN 368 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~ 368 (400)
+ +.|.+|+...
T Consensus 270 -~-----~~v~v~~~~~ 280 (286)
T 1q7f_A 270 -D-----YRLYIYRYVQ 280 (286)
T ss_dssp -T-----TEEEEEECSC
T ss_pred -C-----CeEEEEEccc
Confidence 1 4677777543
No 72
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.77 E-value=0.0096 Score=55.52 Aligned_cols=212 Identities=11% Similarity=0.073 Sum_probs=113.6
Q ss_pred ceEEEEEcCCCceEEccCCc-ccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLP-FAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYA 203 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~-~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv 203 (400)
..+..||..+++-... +. ....-.+++..++. ++.......+..+|..+++-.. .+............++..++
T Consensus 139 g~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~l~ 213 (445)
T 2ovr_B 139 NTLKVWSAVTGKCLRT--LVGHTGGVWSSQMRDNI-IISGSTDRTLKVWNAETGECIH--TLYGHTSTVRCMHLHEKRVV 213 (445)
T ss_dssp SCEEEEETTTCCEEEE--CCCCSSCEEEEEEETTE-EEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEETTEEE
T ss_pred CcEEEEECCCCcEEEE--EcCCCCCEEEEEecCCE-EEEEeCCCeEEEEECCcCcEEE--EECCCCCcEEEEEecCCEEE
Confidence 4688888877663321 11 11112233444444 5555666788899988765322 11111111122223445566
Q ss_pred EcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCC
Q psy2979 204 VGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI 283 (400)
Q Consensus 204 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 283 (400)
.|+.+ ..+..||..+++-... +........+...++..++.|+. ++ .+..||..+.+-.. .+..
T Consensus 214 s~s~d-----g~i~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~---dg----~i~iwd~~~~~~~~--~~~~ 277 (445)
T 2ovr_B 214 SGSRD-----ATLRVWDIETGQCLHV--LMGHVAAVRCVQYDGRRVVSGAY---DF----MVKVWDPETETCLH--TLQG 277 (445)
T ss_dssp EEETT-----SEEEEEESSSCCEEEE--EECCSSCEEEEEECSSCEEEEET---TS----CEEEEEGGGTEEEE--EECC
T ss_pred EEeCC-----CEEEEEECCCCcEEEE--EcCCcccEEEEEECCCEEEEEcC---CC----EEEEEECCCCcEeE--EecC
Confidence 66655 4688899887753322 11111122333447777888877 44 68889887654222 2221
Q ss_pred CceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEE
Q psy2979 284 PRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIEC 363 (400)
Q Consensus 284 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~ 363 (400)
..........++..++.|+. ...+..||..+++-... +............++..++.|+. + ..|.+
T Consensus 278 ~~~~v~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~-d-----g~i~v 343 (445)
T 2ovr_B 278 HTNRVYSLQFDGIHVVSGSL------DTSIRVWDVETGNCIHT--LTGHQSLTSGMELKDNILVSGNA-D-----STVKI 343 (445)
T ss_dssp CSSCEEEEEECSSEEEEEET------TSCEEEEETTTCCEEEE--ECCCCSCEEEEEEETTEEEEEET-T-----SCEEE
T ss_pred CCCceEEEEECCCEEEEEeC------CCeEEEEECCCCCEEEE--EcCCcccEEEEEEeCCEEEEEeC-C-----CeEEE
Confidence 11222333447777777776 45789999987764322 11111222334445666677765 2 46889
Q ss_pred EECCCCcE
Q psy2979 364 YDVDNDSW 371 (400)
Q Consensus 364 yd~~~~~W 371 (400)
||..+++-
T Consensus 344 wd~~~~~~ 351 (445)
T 2ovr_B 344 WDIKTGQC 351 (445)
T ss_dssp EETTTCCE
T ss_pred EECCCCcE
Confidence 99877653
No 73
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=97.75 E-value=3.1e-05 Score=61.51 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=55.8
Q ss_pred eEEEE-CCeEEehhhHHHhhcCccccccc------------eeecCCCCHHH---HHHHhhhcc----------------
Q psy2979 20 VTLCV-DGSKFPAHRVVLAASSPYFKVLE------------TIRLPQLSPYF---LHDCVEQCA---------------- 67 (400)
Q Consensus 20 v~l~~-~~~~~~~hr~vLaa~s~yf~~m~------------~vrl~~l~~~~---l~~~i~~~~---------------- 67 (400)
|+|.. ||+.|++||.| |++|+||+.|. .|.|+.++... ++++.+++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~ 81 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------C
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccch
Confidence 67765 89999999999 99999999872 48899999984 456666654
Q ss_pred ----------cccCchhHHHHHHHHHhcCCCccc
Q psy2979 68 ----------IIKNNPQCAQLVEEAKLFHLLPDR 91 (400)
Q Consensus 68 ----------l~~~~~~c~~~l~~a~~~~~~~~~ 91 (400)
+-.+...+.+++.+|..+++.+..
T Consensus 82 ~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Ll 115 (159)
T 2ast_A 82 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLL 115 (159)
T ss_dssp CCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHH
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHH
Confidence 556777889999999887755443
No 74
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.72 E-value=0.0076 Score=54.29 Aligned_cols=237 Identities=10% Similarity=0.014 Sum_probs=117.6
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCccc-ceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCC-
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFA-ISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKF- 187 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~-~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~- 187 (400)
.++++|+.+ ..+..||..++++..+..+... ..-.+++.. ++..++.......+..||..++++.....+..
T Consensus 21 ~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 95 (372)
T 1k8k_C 21 TQIAICPNN-----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI 95 (372)
T ss_dssp SEEEEECSS-----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCC
T ss_pred CEEEEEeCC-----CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecC
Confidence 345566544 4788899888876554433321 122334444 34413333545678888888777654433221
Q ss_pred cceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCc-eEEccCCCCcccc--cEEEE-eCCEEEEEcCccccCCCCc
Q psy2979 188 DFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNE-WSYIEPMKLAVTS--PAVVA-HEGMLYVTGGAILEDGDGI 262 (400)
Q Consensus 188 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~l~~~~~~--~~~~~-~~~~iyv~GG~~~~~~~~~ 262 (400)
...-.++... ++..++.|+.+ ..+..||..+.+ |.....+..+... .+++. -++..++.|+. ++
T Consensus 96 ~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg--- 164 (372)
T 1k8k_C 96 NRAARCVRWAPNEKKFAVGSGS-----RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC---DF--- 164 (372)
T ss_dssp SSCEEEEEECTTSSEEEEEETT-----SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET---TS---
T ss_pred CCceeEEEECCCCCEEEEEeCC-----CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC---CC---
Confidence 1112222222 55666667654 346666666553 3322222111111 12222 26677777776 44
Q ss_pred ceEEEEeCCCC----------------ceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 263 EQVQRYNPKVN----------------QWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 263 ~~v~~yd~~~~----------------~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
.+..||.... .-..+..+.........+.. ++..++.|+. ...+..||..+.+-.
T Consensus 165 -~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 165 -KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH------DSTVCLADADKKMAV 237 (372)
T ss_dssp -CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET------TTEEEEEEGGGTTEE
T ss_pred -CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC------CCEEEEEECCCCcee
Confidence 6888885421 11111122111111122222 5666777765 457999998776533
Q ss_pred EccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCC--CcEEEecCC
Q psy2979 325 YKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDN--DSWEIMSHL 377 (400)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~~~~ 377 (400)
..-.............-++++++.| . + ..+.+||..+ ++|..+..+
T Consensus 238 ~~~~~~~~~v~~~~~~~~~~~l~~~-~-d-----~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 238 ATLASETLPLLAVTFITESSLVAAG-H-D-----CFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp EEEECSSCCEEEEEEEETTEEEEEE-T-T-----SSCEEEEEETTTTEEEECCCC
T ss_pred EEEccCCCCeEEEEEecCCCEEEEE-e-C-----CeEEEEEccCcCceEEEeecc
Confidence 2211111111111222377876666 4 2 3567777777 889877544
No 75
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.71 E-value=0.016 Score=51.11 Aligned_cols=217 Identities=12% Similarity=0.050 Sum_probs=115.4
Q ss_pred CcccceeeeEEEE-CCeEEEEEe-ecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEE
Q psy2979 143 LPFAISKHGLVVS-GRNTIYCLD-IVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERY 219 (400)
Q Consensus 143 ~~~~~~~~~~~~~-~~~~iyv~~-~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~y 219 (400)
+|......++++. ++. ||+.. ....++.+|+... .......+ ..-++++.. ++++|+...... ...+.+|
T Consensus 28 ~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~~~~~~--~~p~gia~~~dG~l~vad~~~~---~~~v~~~ 100 (306)
T 2p4o_A 28 FPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQIHATVE--GKVSGLAFTSNGDLVATGWNAD---SIPVVSL 100 (306)
T ss_dssp ECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEEEEECS--SEEEEEEECTTSCEEEEEECTT---SCEEEEE
T ss_pred CCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEEEEeCC--CCceeEEEcCCCcEEEEeccCC---cceEEEE
Confidence 3333334455553 556 88884 5578999998764 33222222 122333333 567888753211 1248889
Q ss_pred eCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCc---eeeccC----CC--CCceeee
Q psy2979 220 DPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ---WQDLAP----ML--IPRSGAA 289 (400)
Q Consensus 220 d~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~---W~~~~~----~~--~~r~~~~ 289 (400)
|+.+++.+.+..++..+.....+. .++.+|+.... ...++++|+.+.. |..-+. .+ .-....+
T Consensus 101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~-------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~png 173 (306)
T 2p4o_A 101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSY-------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 173 (306)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETT-------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECC-------CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCC
Confidence 998888877665554444334443 35667876532 2479999987642 211110 11 1111222
Q ss_pred EEEECCeEEEEcCcCCCCCCCCeEEEEECCC-CeE---EEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEE
Q psy2979 290 ICALDSCIYVLGGWHASTENTNRVECYHIAE-NTW---EYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECY 364 (400)
Q Consensus 290 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~-~~W---~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~y 364 (400)
+..-++.+|+..-. .+.+++||+.. ++. ...... ..-.++++- +|+||+.-.. .+.|.+|
T Consensus 174 is~dg~~lyv~d~~------~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~------~~~V~~~ 238 (306)
T 2p4o_A 174 LKRFGNFLYVSNTE------KMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHI------YNSVVRI 238 (306)
T ss_dssp EEEETTEEEEEETT------TTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBT------TCCEEEE
T ss_pred cCcCCCEEEEEeCC------CCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCC------CCeEEEE
Confidence 33335578887643 56899999865 221 111111 111233333 6889987643 2569999
Q ss_pred ECCCCcEEEecCCCCCCCceeeEEE
Q psy2979 365 DVDNDSWEIMSHLPSARSWLGCVPL 389 (400)
Q Consensus 365 d~~~~~W~~~~~~~~~r~~~~~~~~ 389 (400)
|+. ++...+...+.+-....++.+
T Consensus 239 ~~~-G~~~~~~~~~~~~~~p~~~a~ 262 (306)
T 2p4o_A 239 APD-RSTTIIAQAEQGVIGSTAVAF 262 (306)
T ss_dssp CTT-CCEEEEECGGGTCTTEEEEEE
T ss_pred CCC-CCEEEEeecccccCCceEEEE
Confidence 996 455444333334333444444
No 76
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.71 E-value=0.016 Score=53.65 Aligned_cols=258 Identities=11% Similarity=0.012 Sum_probs=128.6
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcc---cc-eeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEcc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPF---AI-SKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLG 183 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~---~~-~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~ 183 (400)
+.+++.++.+ ..+..+|+.+++.......+. .. .-.+++.. ++. +++. .....+..+|+.+++....-
T Consensus 134 ~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~v~~~d~~~~~~~~~~ 207 (433)
T 3bws_A 134 TRLAIPLLED-----EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE-LWVSQMQANAVHVFDLKTLAYKATV 207 (433)
T ss_dssp SEEEEEBTTS-----SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE-EEEEEGGGTEEEEEETTTCCEEEEE
T ss_pred CeEEEEeCCC-----CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE-EEEEECCCCEEEEEECCCceEEEEE
Confidence 5666666543 458899999887665332211 11 12233333 445 6665 44578999998876543221
Q ss_pred CCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCC
Q psy2979 184 SLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGD 260 (400)
Q Consensus 184 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~ 260 (400)
.. ....-.+++.. ++.+|+.++.+ ..+..||+.+++....-+... .-.+++. -+++.+++++.. .+.
T Consensus 208 ~~-~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~--~~~ 277 (433)
T 3bws_A 208 DL-TGKWSKILLYDPIRDLVYCSNWIS-----EDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFS--ASN 277 (433)
T ss_dssp EC-SSSSEEEEEEETTTTEEEEEETTT-----TEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEE--SCT
T ss_pred cC-CCCCeeEEEEcCCCCEEEEEecCC-----CcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECC--CCc
Confidence 11 11111222222 44677776543 368999998886644322221 1122222 245344444431 110
Q ss_pred ---CcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCc
Q psy2979 261 ---GIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYR 335 (400)
Q Consensus 261 ---~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~ 335 (400)
.-..+..||+.+.+-......+. ....++.. ++ .+|+.++. ...+..||+.+++-...- +... .
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~------~~~v~v~d~~~~~~~~~~--~~~~-~ 346 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIGPPG--NKRHIVSGNTENKIYVSDMC------CSKIEVYDLKEKKVQKSI--PVFD-K 346 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEEEEE--CEEEEEECSSTTEEEEEETT------TTEEEEEETTTTEEEEEE--ECSS-S
T ss_pred cccCCCeEEEEECCCCcEEeeccCCC--CcceEEECCCCCEEEEEecC------CCEEEEEECCCCcEEEEe--cCCC-C
Confidence 02478999998775433321111 11122222 34 68887665 568999999877644322 2111 1
Q ss_pred ceEEEE--CC-EEEEEcCccCCC---------CCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcccccccc
Q psy2979 336 PGIAVI--DG-KIYVLGGEEGWD---------GYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 336 ~~~~~~--~~-~lyv~GG~~~~~---------~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
...+.+ ++ .+|+.+.. ... .....|++||+.+.+.... ++....-.+++...+..++++
T Consensus 347 ~~~~~~s~dg~~l~~~~~~-~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 347 PNTIALSPDGKYLYVSCRG-PNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF--WEAGNQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp EEEEEECTTSSEEEEEECC-CCCTTTCTTSCCSSCCEEEEEETTTTEEEEE--EECSSSEEEEEECTTSCEEEE
T ss_pred CCeEEEcCCCCEEEEEecC-CCccccccccccccceEEEEEECCCCcEEEE--ecCCCCCceEEEcCCCCEEEE
Confidence 223333 45 45555432 110 0124899999988765443 222222344444455555543
No 77
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.70 E-value=0.015 Score=51.33 Aligned_cols=241 Identities=13% Similarity=0.026 Sum_probs=121.5
Q ss_pred ceEEEEEcCCCceE----EccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCccee-eeEEEE-
Q psy2979 125 RSVEGFCVKTKVWK----TLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDV-SGIAML- 197 (400)
Q Consensus 125 ~~~~~yd~~~~~w~----~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~-~~~~~~- 197 (400)
..+..||..++... .+........-.+++.. ++..+++......+..||..+++......+...... .+++..
T Consensus 72 g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 151 (337)
T 1gxr_A 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151 (337)
T ss_dssp SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT
T ss_pred CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC
Confidence 46788887765421 11111112222333333 333133335557889999988775443332221111 122222
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCcee
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 276 (400)
++..++.|+.+ ..+..||..+++....-....... .+++. -++..+++|+. + ..+..||..+.+-.
T Consensus 152 ~~~~l~~~~~d-----g~v~~~d~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~---d----g~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 152 DSKVCFSCCSD-----GNIAVWDLHNQTLVRQFQGHTDGA-SCIDISNDGTKLWTGGL---D----NTVRSWDLREGRQL 218 (337)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEECCCSSCE-EEEEECTTSSEEEEEET---T----SEEEEEETTTTEEE
T ss_pred CCCEEEEEeCC-----CcEEEEeCCCCceeeeeecccCce-EEEEECCCCCEEEEEec---C----CcEEEEECCCCceE
Confidence 55666667654 358899998876433222111111 12222 26667777776 4 37899998776543
Q ss_pred eccCCCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccC
Q psy2979 277 DLAPMLIPRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEG 353 (400)
Q Consensus 277 ~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~ 353 (400)
..-..+.+ ...++. -++..+++|+. ...+..||..+..-..+.... .....+.+ ++++++.|+. +
T Consensus 219 ~~~~~~~~--v~~~~~s~~~~~l~~~~~------~~~i~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~-d 286 (337)
T 1gxr_A 219 QQHDFTSQ--IFSLGYCPTGEWLAVGME------SSNVEVLHVNKPDKYQLHLHE---SCVLSLKFAYCGKWFVSTGK-D 286 (337)
T ss_dssp EEEECSSC--EEEEEECTTSSEEEEEET------TSCEEEEETTSSCEEEECCCS---SCEEEEEECTTSSEEEEEET-T
T ss_pred eeecCCCc--eEEEEECCCCCEEEEEcC------CCcEEEEECCCCCeEEEcCCc---cceeEEEECCCCCEEEEecC-C
Confidence 32222222 122222 26677777765 457899999877644332221 11222233 5677777765 2
Q ss_pred CCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcccccccc
Q psy2979 354 WDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 354 ~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
..+.+||..+++-.... .....-.+++...+..++++
T Consensus 287 -----g~i~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~ 323 (337)
T 1gxr_A 287 -----NLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVT 323 (337)
T ss_dssp -----SEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEE
T ss_pred -----CcEEEEECCCCeEEEEe--cCCCcEEEEEECCCCCEEEE
Confidence 47889998887644322 22222333444444444444
No 78
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.69 E-value=0.025 Score=52.64 Aligned_cols=216 Identities=11% Similarity=0.082 Sum_probs=115.6
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAV 204 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~ 204 (400)
..+..+|..+++-...-.. ....-.++...++. ++.......+..+|..+++-... +............++..++.
T Consensus 179 g~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~ 254 (445)
T 2ovr_B 179 RTLKVWNAETGECIHTLYG-HTSTVRCMHLHEKR-VVSGSRDATLRVWDIETGQCLHV--LMGHVAAVRCVQYDGRRVVS 254 (445)
T ss_dssp SCEEEEETTTTEEEEEECC-CSSCEEEEEEETTE-EEEEETTSEEEEEESSSCCEEEE--EECCSSCEEEEEECSSCEEE
T ss_pred CeEEEEECCcCcEEEEECC-CCCcEEEEEecCCE-EEEEeCCCEEEEEECCCCcEEEE--EcCCcccEEEEEECCCEEEE
Confidence 3566777766543221110 11111233333444 55556667888999887653221 11111112223347777777
Q ss_pred cccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCC
Q psy2979 205 GGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIP 284 (400)
Q Consensus 205 GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 284 (400)
|+.+ ..+..||+.+.+-.. .+............++..++.|+. ++ .+..||..+.+-... +...
T Consensus 255 ~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~---d~----~i~i~d~~~~~~~~~--~~~~ 318 (445)
T 2ovr_B 255 GAYD-----FMVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSL---DT----SIRVWDVETGNCIHT--LTGH 318 (445)
T ss_dssp EETT-----SCEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEET---TS----CEEEEETTTCCEEEE--ECCC
T ss_pred EcCC-----CEEEEEECCCCcEeE--EecCCCCceEEEEECCCEEEEEeC---CC----eEEEEECCCCCEEEE--EcCC
Confidence 7765 358888887764322 222111222333447777778877 44 689999877653221 1111
Q ss_pred ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc-CccCcceEEEECCEEEEEcCccCCCCCCCeEEE
Q psy2979 285 RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK-EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIEC 363 (400)
Q Consensus 285 r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~ 363 (400)
.........++..++.|+. ...+..||..+++-...-..+ .......+...++..++.|+. + ..|.+
T Consensus 319 ~~~v~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~-d-----g~v~i 386 (445)
T 2ovr_B 319 QSLTSGMELKDNILVSGNA------DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD-D-----GTVKL 386 (445)
T ss_dssp CSCEEEEEEETTEEEEEET------TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEET-T-----SEEEE
T ss_pred cccEEEEEEeCCEEEEEeC------CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeC-C-----CeEEE
Confidence 1222333445666777765 457999998776543222211 122223345557777777876 2 47899
Q ss_pred EECCCCcEE
Q psy2979 364 YDVDNDSWE 372 (400)
Q Consensus 364 yd~~~~~W~ 372 (400)
||..+++..
T Consensus 387 wd~~~~~~~ 395 (445)
T 2ovr_B 387 WDLKTGEFI 395 (445)
T ss_dssp EETTTCCEE
T ss_pred EECCCCcee
Confidence 999887644
No 79
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=97.69 E-value=0.014 Score=52.52 Aligned_cols=264 Identities=14% Similarity=0.064 Sum_probs=123.8
Q ss_pred cEEEEEeccCCCc-ccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee----cCEE--EEEECCCCCeEE
Q psy2979 110 NVIIAVGGEDDKV-VLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI----VDIV--YVAASMHKILHS 181 (400)
Q Consensus 110 ~~i~~~gg~~~~~-~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~----~~~~--~~yd~~~~~w~~ 181 (400)
...+.+|.+.... .--.++.+|+.++++..+... .......++.. ++..||+... ...+ |.+++.+++.+.
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 3455677665321 222455567788887766543 22222233433 3443666633 2455 455665567766
Q ss_pred ccCCCC-cceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc-eEEcc-------CCCC-----cccccEEEE-eCC
Q psy2979 182 LGSLKF-DFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE-WSYIE-------PMKL-----AVTSPAVVA-HEG 246 (400)
Q Consensus 182 ~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~-------~l~~-----~~~~~~~~~-~~~ 246 (400)
+...+. ...-..++.-++.+|+.+..+ ..+..|+..++. ...+. .-+. ....+.++. -++
T Consensus 92 ~~~~~~~~~~p~~~~~dg~~l~~~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg 166 (361)
T 3scy_A 92 LNTQKTMGADPCYLTTNGKNIVTANYSG-----GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG 166 (361)
T ss_dssp EEEEECSSSCEEEEEECSSEEEEEETTT-----TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred eeEeccCCCCcEEEEECCCEEEEEECCC-----CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence 654432 122222333234566654322 457788876432 11110 0010 001122333 245
Q ss_pred -EEEEEcCccccCCCCcceEEEEeCCCCc-------eeec-----cCCCCCceeeeEEE-ECC-eEEEEcCcCCCCCCCC
Q psy2979 247 -MLYVTGGAILEDGDGIEQVQRYNPKVNQ-------WQDL-----APMLIPRSGAAICA-LDS-CIYVLGGWHASTENTN 311 (400)
Q Consensus 247 -~iyv~GG~~~~~~~~~~~v~~yd~~~~~-------W~~~-----~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~ 311 (400)
.+|+.+.. .+.+..|+..... .... ...+....-..++. -++ .+|+.+.. ..
T Consensus 167 ~~l~~~~~~-------~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~------~~ 233 (361)
T 3scy_A 167 KYLLADDLG-------TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI------GG 233 (361)
T ss_dssp SEEEEEETT-------TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------TC
T ss_pred CEEEEEeCC-------CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC------CC
Confidence 47776543 2367777655433 2111 11111111112222 255 47776633 45
Q ss_pred eEEEEECCCCeEEEccC---CcCccCcceEEEE--CCE-EEEEcCccCCCCCCCeEEEEEC--CCCcEEEecCCCCCCCc
Q psy2979 312 RVECYHIAENTWEYKSP---MKEKRYRPGIAVI--DGK-IYVLGGEEGWDGYHDSIECYDV--DNDSWEIMSHLPSARSW 383 (400)
Q Consensus 312 ~v~~yd~~~~~W~~~~~---~~~~~~~~~~~~~--~~~-lyv~GG~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~r~~ 383 (400)
.+..||..++++..+.. .+..........+ +|+ ||+.... . .+.+.+|+. .+++++.+..++....-
T Consensus 234 ~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-~----~~~i~v~~~~~~~g~~~~~~~~~~g~~~ 308 (361)
T 3scy_A 234 TVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-K----ADGVAIFKVDETNGTLTKVGYQLTGIHP 308 (361)
T ss_dssp EEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-S----SCEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred eEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-C----CCEEEEEEEcCCCCcEEEeeEecCCCCC
Confidence 78899988887755543 3322223334444 454 6665421 0 134566554 57787777655433223
Q ss_pred eeeEEEcccccccc
Q psy2979 384 LGCVPLQIHKSQFV 397 (400)
Q Consensus 384 ~~~~~~~~~~~~~~ 397 (400)
.++++-.+..++++
T Consensus 309 ~~~~~spdg~~l~~ 322 (361)
T 3scy_A 309 RNFIITPNGKYLLV 322 (361)
T ss_dssp CEEEECTTSCEEEE
T ss_pred ceEEECCCCCEEEE
Confidence 34455445554444
No 80
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.0044 Score=55.97 Aligned_cols=239 Identities=12% Similarity=0.037 Sum_probs=120.0
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcccc-eeeeEEEE-C--CeEEEEEeecCEEEEEECCCCCeEEccCCC
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAI-SKHGLVVS-G--RNTIYCLDIVDIVYVAASMHKILHSLGSLK 186 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~-~~~~~~~~-~--~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~ 186 (400)
..++.|+.+ ..+.+||.....+..+..+.... .-.+++.. + +..++.......+..+|..+++|..+..+.
T Consensus 24 ~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 98 (379)
T 3jrp_A 24 KRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA 98 (379)
T ss_dssp SEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred CEEEEEECC-----CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeec
Confidence 345555544 35777877655555433332211 12233332 1 341333355567888898888876655543
Q ss_pred CcceeeeEEEE--C--CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccc-ccEEEEe--------------CCE
Q psy2979 187 FDFDVSGIAML--D--GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVT-SPAVVAH--------------EGM 247 (400)
Q Consensus 187 ~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~-~~~~~~~--------------~~~ 247 (400)
..........+ + +.+++.|+.+ ..+..||..+..-.....+..... -.+++.. ++.
T Consensus 99 ~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 173 (379)
T 3jrp_A 99 VHSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR 173 (379)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTC
T ss_pred CCCcceEEEEeCCCCCCCEEEEecCC-----CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCC
Confidence 22222222222 3 5566777655 457888887663211101111111 1112221 467
Q ss_pred EEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCCCceeeeEEEE--C---CeEEEEcCcCCCCCCCCeEEEEECCC
Q psy2979 248 LYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIPRSGAAICAL--D---SCIYVLGGWHASTENTNRVECYHIAE 320 (400)
Q Consensus 248 iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~--~---~~iyv~GG~~~~~~~~~~v~~yd~~~ 320 (400)
.++.|+. ++ .+..||..+.. |.....+............ + +.+++.|+. ...+..||..+
T Consensus 174 ~l~~~~~---dg----~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~------dg~i~iwd~~~ 240 (379)
T 3jrp_A 174 KFVTGGA---DN----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ------DRTCIIWTQDN 240 (379)
T ss_dssp EEEEEET---TS----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET------TSCEEEEEESS
T ss_pred EEEEEeC---CC----eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC------CCEEEEEeCCC
Confidence 7788877 54 57788775443 5544433322222222222 4 678888876 44677888776
Q ss_pred Ce----EEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECC-CCcEEEecCCCC
Q psy2979 321 NT----WEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVD-NDSWEIMSHLPS 379 (400)
Q Consensus 321 ~~----W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~ 379 (400)
.. ......... ......+.+ +++.+++|+. + ..|.+||.. .+.|..+..+..
T Consensus 241 ~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~-d-----g~i~iw~~~~~~~~~~~~~~~~ 299 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGG-D-----NKVTLWKENLEGKWEPAGEVHQ 299 (379)
T ss_dssp TTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEES-S-----SSEEEEEEEETTEEEEEEEEC-
T ss_pred CCccceeeeeccccC-CCcEEEEEEcCCCCEEEEecC-C-----CcEEEEeCCCCCccccccceec
Confidence 52 222221111 111122233 6776777765 2 357777776 467888765443
No 81
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=97.65 E-value=0.02 Score=55.17 Aligned_cols=257 Identities=11% Similarity=0.032 Sum_probs=133.7
Q ss_pred CcEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEEC--CCCCeEEccCC
Q psy2979 109 INVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAAS--MHKILHSLGSL 185 (400)
Q Consensus 109 ~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~--~~~~w~~~~~~ 185 (400)
.+.+++.+..+ ..+.++|..+++.... ++.....|+++.. ++..+|+....+.+..||+ .+.+ .+..+
T Consensus 148 ~~~~~vs~~~d-----~~V~v~D~~t~~~~~~--i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~--~~~~i 218 (543)
T 1nir_A 148 PNLFSVTLRDA-----GQIALVDGDSKKIVKV--IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--KVAEI 218 (543)
T ss_dssp GGEEEEEEGGG-----TEEEEEETTTCCEEEE--EECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--EEEEE
T ss_pred CCEEEEEEcCC-----CeEEEEECCCceEEEE--EecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCc--EEEEE
Confidence 46677765543 5778889988765422 2211124555554 4444777765689999999 5543 22333
Q ss_pred CCcceeeeEEEE-----CC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCC-----------CCcccccEEEEe-CCE
Q psy2979 186 KFDFDVSGIAML-----DG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM-----------KLAVTSPAVVAH-EGM 247 (400)
Q Consensus 186 ~~~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l-----------~~~~~~~~~~~~-~~~ 247 (400)
+....-.+++.. ++ .+|+.+-.+ .++..+|..+.+-...-+. +.++....+... ++.
T Consensus 219 ~~g~~p~~va~sp~~~~dg~~l~v~~~~~-----~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~ 293 (543)
T 1nir_A 219 KIGIEARSVESSKFKGYEDRYTIAGAYWP-----PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 293 (543)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEES-----SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred ecCCCcceEEeCCCcCCCCCEEEEEEccC-----CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence 322222233332 34 566643222 4688889887654332111 111222222222 456
Q ss_pred EEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEE
Q psy2979 248 LYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSC-IYVLGGWHASTENTNRVECYHIAENTWEY 325 (400)
Q Consensus 248 iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 325 (400)
+|+.... ...++.+|..+..-..+..++..+.-+..+.. +++ +|+.+.. .+++..+|..+++-..
T Consensus 294 ~~vs~~~-------~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~------~~~v~v~D~~tg~l~~ 360 (543)
T 1nir_A 294 FIVNVKE-------TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN------SNKVAVIDSKDRRLSA 360 (543)
T ss_dssp EEEEETT-------TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG------GTEEEEEETTTTEEEE
T ss_pred EEEEECC-------CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC------CCeEEEEECCCCeEEE
Confidence 6665544 34789999876432111111222222333333 555 5554433 5689999999987544
Q ss_pred cc---CCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCC-----cEEEecCCCCCC-CceeeEEEccccc
Q psy2979 326 KS---PMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDND-----SWEIMSHLPSAR-SWLGCVPLQIHKS 394 (400)
Q Consensus 326 ~~---~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~-----~W~~~~~~~~~r-~~~~~~~~~~~~~ 394 (400)
.- ..|.+...... .. ++.+|+.+.. + .+.|-++|..+. .|+.+..++..- ....+.+..+...
T Consensus 361 ~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~-~----d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~ 434 (543)
T 1nir_A 361 LVDVGKTPHPGRGANF-VHPKYGPVWSTSHL-G----DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH 434 (543)
T ss_dssp EEECSSSBCCTTCEEE-EETTTEEEEEEEBS-S----SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCE
T ss_pred eeccCCCCCCCCCccc-CCCCCccEEEeccC-C----CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCc
Confidence 22 22322222222 22 4788888753 1 246888887762 388777665432 2344555566566
Q ss_pred cccc
Q psy2979 395 QFVD 398 (400)
Q Consensus 395 ~~~~ 398 (400)
++++
T Consensus 435 l~v~ 438 (543)
T 1nir_A 435 LYVD 438 (543)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 5554
No 82
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.64 E-value=0.00094 Score=57.16 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=82.1
Q ss_pred cEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 239 PAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 239 ~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
.++...++.+|+..|. ++ .+..+|+.+.+-..-- ++...++.+++..+++||+.... .+.+++||+
T Consensus 58 qGL~~~~~~Ly~stG~---~g----~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~------~~~v~V~D~ 123 (268)
T 3nok_A 58 QGLVFHQGHFFESTGH---QG----TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT------EGLLFTWSG 123 (268)
T ss_dssp EEEEEETTEEEEEETT---TT----EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS------SCEEEEEET
T ss_pred ceEEEECCEEEEEcCC---CC----EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc------CCEEEEEEC
Confidence 4666678999999998 43 5999999988754433 55555667788889999999765 679999999
Q ss_pred CCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 319 AENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 319 ~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+.+-.. ..+.+..+.+++.-+++||+.-|. +.++.+||++.+
T Consensus 124 ~Tl~~~~--ti~~~~eGwGLt~Dg~~L~vSdGs-------~~l~~iDp~T~~ 166 (268)
T 3nok_A 124 MPPQRER--TTRYSGEGWGLCYWNGKLVRSDGG-------TMLTFHEPDGFA 166 (268)
T ss_dssp TTTEEEE--EEECSSCCCCEEEETTEEEEECSS-------SEEEEECTTTCC
T ss_pred CcCcEEE--EEeCCCceeEEecCCCEEEEECCC-------CEEEEEcCCCCe
Confidence 8876432 233344566777778899998664 589999999875
No 83
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.63 E-value=0.0067 Score=61.41 Aligned_cols=206 Identities=7% Similarity=0.096 Sum_probs=117.3
Q ss_pred eEEEEEcCCCceEEccC----CcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCC----CCc-ceeeeEE
Q psy2979 126 SVEGFCVKTKVWKTLSC----LPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSL----KFD-FDVSGIA 195 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~----~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~----~~~-r~~~~~~ 195 (400)
-+..||+.++++..+.. ++.. .-.+++.- ++. |++... ..+++||+.+++|...... ..+ ..-.++.
T Consensus 428 Gl~~~d~~~~~~~~~~~~~~~l~~~-~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 504 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRNSQLVNE-NVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLF 504 (795)
T ss_dssp EEEEEETTTCCEEEECTTTSCCSCS-CEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEE
T ss_pred ceeEEeCCCCcEEEeecCCCCcCCC-eeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEE
Confidence 45677777777666543 1111 11223322 455 777654 7899999999999877543 111 1111222
Q ss_pred EE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCC--CCcc-ccc--EEEE-eCCEEEEEcCccccCCCCcceEEEE
Q psy2979 196 ML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM--KLAV-TSP--AVVA-HEGMLYVTGGAILEDGDGIEQVQRY 268 (400)
Q Consensus 196 ~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l--~~~~-~~~--~~~~-~~~~iyv~GG~~~~~~~~~~~v~~y 268 (400)
.- ++.||+... ..+.+||+.++++ ..... .... ... +.+. -+|.|++.... .+.+|
T Consensus 505 ~d~~g~lWigt~-------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~---------Gl~~~ 567 (795)
T 4a2l_A 505 RDSHKRLWIGGE-------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE---------GFYCF 567 (795)
T ss_dssp ECTTCCEEEEES-------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS---------CEEEE
T ss_pred ECCCCCEEEEeC-------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC---------CceeE
Confidence 22 567887543 2388999998888 43321 1111 111 2222 35778874322 58999
Q ss_pred eCCCCceeecc---CCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC---CcCccCcceEEEE
Q psy2979 269 NPKVNQWQDLA---PMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP---MKEKRYRPGIAVI 341 (400)
Q Consensus 269 d~~~~~W~~~~---~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~~~~~~~~~~ 341 (400)
|+.+++++... .+|.... .+++.- +|.|++.+ .+-+.+|||.++++..... ++.......++..
T Consensus 568 d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lWi~t--------~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~ 638 (795)
T 4a2l_A 568 NEKDKQIKRYNTTNGLPNNVV-YGILEDSFGRLWLST--------NRGISCFNPETEKFRNFTESDGLQSNQFNTASYCR 638 (795)
T ss_dssp ETTTTEEEEECGGGTCSCSCE-EEEEECTTSCEEEEE--------TTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEE
T ss_pred CCCCCcEEEeCCCCCCchhhe-EEEEECCCCCEEEEc--------CCceEEEcCCCCcEEEcCCcCCCccccCccCceeE
Confidence 99999887664 3443322 233332 67888877 3478999999999887642 4433332233333
Q ss_pred --CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 342 --DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 342 --~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
+|.||+-| . +.+..|||+.
T Consensus 639 ~~~G~l~~g~-~-------~Gl~~~~p~~ 659 (795)
T 4a2l_A 639 TSVGQMYFGG-I-------NGITTFRPEL 659 (795)
T ss_dssp CTTSCEEEEE-T-------TEEEEECGGG
T ss_pred CCCCeEEEec-C-------CceEEEcHHH
Confidence 67777654 3 2466777754
No 84
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.0049 Score=55.66 Aligned_cols=179 Identities=16% Similarity=0.130 Sum_probs=94.3
Q ss_pred CEEEEEECCCCCeEEccCCCCcce-eeeEEEE-C--CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFD-VSGIAML-D--GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV 242 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~-~~~~~~~-~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~ 242 (400)
..+..||...+++..+..+..... -.+++.. + +.+++.|+.+ ..+..||..+++|..+..+.........+
T Consensus 33 g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 107 (379)
T 3jrp_A 33 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEENGRWSQIAVHAVHSASVNSV 107 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC-----CEEEEEEcCCCceeEeeeecCCCcceEEE
Confidence 445666665555544443332211 2222222 2 5666777765 35888999999887665444322222223
Q ss_pred Ee--C--CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC-CCceeeeEEEE--------------CCeEEEEcCc
Q psy2979 243 AH--E--GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML-IPRSGAAICAL--------------DSCIYVLGGW 303 (400)
Q Consensus 243 ~~--~--~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--------------~~~iyv~GG~ 303 (400)
.+ + +.++++|+. ++ .+..||..+..-.....+. ....-.++... ++..++.|+.
T Consensus 108 ~~~~~~~~~~l~~~~~---d~----~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (379)
T 3jrp_A 108 QWAPHEYGPLLLVASS---DG----KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 180 (379)
T ss_dssp EECCGGGCSEEEEEET---TS----EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEET
T ss_pred EeCCCCCCCEEEEecC---CC----cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC
Confidence 22 3 567777776 43 7888988766321111110 11111122222 3677777776
Q ss_pred CCCCCCCCeEEEEECCCC--eEEEccCCcCccCcceEEEE--C---CEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 304 HASTENTNRVECYHIAEN--TWEYKSPMKEKRYRPGIAVI--D---GKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 304 ~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~--~---~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
...+..||..++ .|.....+...........+ + +++++.|+. + ..|.+||..+.
T Consensus 181 ------dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-d-----g~i~iwd~~~~ 241 (379)
T 3jrp_A 181 ------DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-D-----RTCIIWTQDNE 241 (379)
T ss_dssp ------TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET-T-----SCEEEEEESST
T ss_pred ------CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC-C-----CEEEEEeCCCC
Confidence 346777777544 45544433322222233333 4 788888876 3 35788888775
No 85
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=97.58 E-value=0.02 Score=52.94 Aligned_cols=225 Identities=9% Similarity=-0.024 Sum_probs=119.7
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeec---CEEEEEECCCCCeEEccCCCCcceeeeEEEE-CC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIV---DIVYVAASMHKILHSLGSLKFDFDVSGIAML-DG 199 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~---~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~ 199 (400)
..+..+|.....-..+..-. ..-.+.+.. ++..|+..... ..++.+|..+++...+...+. ...+.+.. ++
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~--~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~--~~~~~~~spdg 234 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP--QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR--HNGAPAFSPDG 234 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS--CEEEEEECTTS
T ss_pred ceEEEEcCCCCCCEEEeCCC--CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCC--cccCEEEcCCC
Confidence 57888888765544433111 111223333 44423333222 489999999888766554332 11222222 44
Q ss_pred -EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCE-EEEEcCccccCCCCcceEEEEeCCCCcee
Q psy2979 200 -FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGM-LYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276 (400)
Q Consensus 200 -~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 276 (400)
.|++.+..++ ...++.+|+.+++...+...+... ...+ .-+++ |++.+.. ++ ...++.+|..+.+-.
T Consensus 235 ~~la~~~~~~g---~~~i~~~d~~~~~~~~l~~~~~~~--~~~~~spdg~~l~~~s~~---~g--~~~i~~~d~~~~~~~ 304 (415)
T 2hqs_A 235 SKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSNN--TEPTWFPDSQNLAFTSDQ---AG--RPQVYKVNINGGAPQ 304 (415)
T ss_dssp SEEEEEECTTS---SCEEEEEETTTCCEEECCCCSSCE--EEEEECTTSSEEEEEECT---TS--SCEEEEEETTSSCCE
T ss_pred CEEEEEEecCC---CceEEEEECCCCCEEeCcCCCCcc--cceEECCCCCEEEEEECC---CC--CcEEEEEECCCCCEE
Confidence 4555554332 256999999998876665433211 1111 12454 4444332 22 347999999887655
Q ss_pred eccCCCCCceeeeEE-EECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccC
Q psy2979 277 DLAPMLIPRSGAAIC-ALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEG 353 (400)
Q Consensus 277 ~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~ 353 (400)
.+... .......+ .-+++.+++++.... ...++.+|+.+++...+.... ....... +|+.+++++. +
T Consensus 305 ~l~~~--~~~~~~~~~spdG~~l~~~~~~~g---~~~i~~~d~~~~~~~~l~~~~----~~~~~~~spdg~~l~~~s~-~ 374 (415)
T 2hqs_A 305 RITWE--GSQNQDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLSSTF----LDETPSLAPNGTMVIYSSS-Q 374 (415)
T ss_dssp ECCCS--SSEEEEEEECTTSSEEEEEEECSS---CEEEEEEETTTCCEEECCCSS----SCEEEEECTTSSEEEEEEE-E
T ss_pred EEecC--CCcccCeEECCCCCEEEEEECcCC---ceEEEEEECCCCCEEEecCCC----CcCCeEEcCCCCEEEEEEc-C
Confidence 44321 11111222 226665555543221 358999999999887665432 2222233 6666666654 2
Q ss_pred CCCCCCeEEEEECCCCcEEEec
Q psy2979 354 WDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 354 ~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
.. ...++.+|+.++..+.+.
T Consensus 375 ~~--~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 375 GM--GSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp TT--EEEEEEEETTSCCEEECC
T ss_pred CC--ccEEEEEECCCCcEEEee
Confidence 11 347999999887766653
No 86
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.57 E-value=0.01 Score=52.22 Aligned_cols=218 Identities=9% Similarity=0.097 Sum_probs=115.7
Q ss_pred ceEEEEEcCCCceEEccCCc---ccceeeeEEEE-C-CeEEEEEeecCEEEEEECCCCCeEEc-cCCCC--cce-eeeEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLP---FAISKHGLVVS-G-RNTIYCLDIVDIVYVAASMHKILHSL-GSLKF--DFD-VSGIA 195 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~---~~~~~~~~~~~-~-~~~iyv~~~~~~~~~yd~~~~~w~~~-~~~~~--~r~-~~~~~ 195 (400)
..+..||+.++++..+.... ....-++++.. + +. +|+......++.||+. ++...+ ..... +.. -..++
T Consensus 46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~ 123 (314)
T 1pjx_A 46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCA 123 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEE
T ss_pred CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEE
Confidence 46889998888877654210 11122344444 3 55 8888666689999998 777665 33211 111 12222
Q ss_pred EE-CCEEEEEcccCC----------CCCCCeEEEEeCCCCceEEccC-CCCcccccEEEEe-----CC-EEEEEcCcccc
Q psy2979 196 ML-DGFVYAVGGWDG----------SCRLDSVERYDPTKNEWSYIEP-MKLAVTSPAVVAH-----EG-MLYVTGGAILE 257 (400)
Q Consensus 196 ~~-~~~iyv~GG~~~----------~~~~~~v~~yd~~~~~W~~~~~-l~~~~~~~~~~~~-----~~-~iyv~GG~~~~ 257 (400)
.. ++.+|+.....+ ......+++||+. ++...+.. +..+ ...+.. ++ .+|+....
T Consensus 124 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~---~~i~~~~~~d~dg~~l~v~~~~--- 196 (314)
T 1pjx_A 124 FDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP---NGIAVRHMNDGRPYQLIVAETP--- 196 (314)
T ss_dssp ECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE---EEEEEEECTTSCEEEEEEEETT---
T ss_pred ECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCc---ceEEEecccCCCCCEEEEEECC---
Confidence 22 678888654321 1122468899987 65544321 1111 223333 34 57887544
Q ss_pred CCCCcceEEEEeCC-CCceee---ccCCCCC--ceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc
Q psy2979 258 DGDGIEQVQRYNPK-VNQWQD---LAPMLIP--RSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK 330 (400)
Q Consensus 258 ~~~~~~~v~~yd~~-~~~W~~---~~~~~~~--r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 330 (400)
...+++||+. +.++.. ...++.. ..-.+++.- ++.+|+.... ...+.+||+.+++....-..+
T Consensus 197 ----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~------~~~i~~~d~~~g~~~~~~~~~ 266 (314)
T 1pjx_A 197 ----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG------SSHIEVFGPDGGQPKMRIRCP 266 (314)
T ss_dssp ----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET------TTEEEEECTTCBSCSEEEECS
T ss_pred ----CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC------CCEEEEEcCCCCcEeEEEeCC
Confidence 2478899875 333321 1122211 112223332 6788887532 457999999854421111122
Q ss_pred CccCcceEEEE--CCE-EEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 331 EKRYRPGIAVI--DGK-IYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 331 ~~~~~~~~~~~--~~~-lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
. .....+.+ +++ ||+.... ...|++||+...
T Consensus 267 ~--~~~~~i~~~~dg~~l~v~~~~------~~~l~~~~~~~~ 300 (314)
T 1pjx_A 267 F--EKPSNLHFKPQTKTIFVTEHE------NNAVWKFEWQRN 300 (314)
T ss_dssp S--SCEEEEEECTTSSEEEEEETT------TTEEEEEECSSC
T ss_pred C--CCceeEEECCCCCEEEEEeCC------CCeEEEEeCCCC
Confidence 1 22333333 454 8887643 257999998764
No 87
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.55 E-value=0.0062 Score=53.56 Aligned_cols=193 Identities=13% Similarity=0.062 Sum_probs=101.9
Q ss_pred EEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC---
Q psy2979 160 IYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL--- 234 (400)
Q Consensus 160 iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~--- 234 (400)
+|++ .....++.||+.+++......... -.+++.. ++.+|+..+ ..+.+||+.+++++.+...+.
T Consensus 27 l~~~d~~~~~i~~~d~~~~~~~~~~~~~~---~~~i~~~~dG~l~v~~~-------~~l~~~d~~~g~~~~~~~~~~~~~ 96 (297)
T 3g4e_A 27 LLFVDIPAKKVCRWDSFTKQVQRVTMDAP---VSSVALRQSGGYVATIG-------TKFCALNWKEQSAVVLATVDNDKK 96 (297)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECSSC---EEEEEEBTTSSEEEEET-------TEEEEEETTTTEEEEEEECCTTCS
T ss_pred EEEEECCCCEEEEEECCCCcEEEEeCCCc---eEEEEECCCCCEEEEEC-------CeEEEEECCCCcEEEEEecCCCCC
Confidence 7776 345678999998876544332111 1122222 566666532 468999999998877654321
Q ss_pred -cccccEEEEeCCEEEEEcCccccC---CCC-cceEEEEeCCCCceeecc-CCCCCceeeeEEEE-CC-eEEEEcCcCCC
Q psy2979 235 -AVTSPAVVAHEGMLYVTGGAILED---GDG-IEQVQRYNPKVNQWQDLA-PMLIPRSGAAICAL-DS-CIYVLGGWHAS 306 (400)
Q Consensus 235 -~~~~~~~~~~~~~iyv~GG~~~~~---~~~-~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~-~~-~iyv~GG~~~~ 306 (400)
.+....++.-+|++|+..-..... ... ...++++|+.. +...+. .+..+ .+++.. ++ .+|+....
T Consensus 97 ~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~p---ngi~~spdg~~lyv~~~~--- 169 (297)
T 3g4e_A 97 NNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDIS---NGLDWSLDHKIFYYIDSL--- 169 (297)
T ss_dssp SEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESBE---EEEEECTTSCEEEEEEGG---
T ss_pred CCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccccc---cceEEcCCCCEEEEecCC---
Confidence 222222233367888753110000 001 45799999863 333321 11111 233333 34 58887654
Q ss_pred CCCCCeEEEEEC--CCCeEEE---ccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCC
Q psy2979 307 TENTNRVECYHI--AENTWEY---KSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP 378 (400)
Q Consensus 307 ~~~~~~v~~yd~--~~~~W~~---~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 378 (400)
...+++||. .++.... +..++.....+....+ +|+||+.... ...|.+||+.+++....-.+|
T Consensus 170 ---~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~------~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 170 ---SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN------GGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp ---GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET------TTEEEEECTTTCCEEEEEECS
T ss_pred ---CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC------CCEEEEEcCCCceEEEEEECC
Confidence 467888875 5554422 1122211112223333 6889987532 136999999977655443444
No 88
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=97.54 E-value=0.0097 Score=51.38 Aligned_cols=234 Identities=12% Similarity=-0.018 Sum_probs=121.8
Q ss_pred ccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCC-CCeEEccCCCCcceeeeEEE-ECC
Q psy2979 123 VLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMH-KILHSLGSLKFDFDVSGIAM-LDG 199 (400)
Q Consensus 123 ~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~-~~w~~~~~~~~~r~~~~~~~-~~~ 199 (400)
....+..+|+.+++...+...+ ..-.+++.. ++. .+++.....++.+|..+ ++...+...........++. -++
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~--~~v~~~~~spdg~-~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTP--ELFEAPNWSPDGK-YLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEES--SCCEEEEECTTSS-EEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred cceeEEEEeCCCCceeeeccCC--cceEeeEECCCCC-EEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 3467888898887766543221 112233333 444 44444567899999988 77666553332111122222 255
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCC-EEEEEcCccccCCCCcceEEEEeCCCCceee
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQD 277 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 277 (400)
+.+++++.... ....++.++..+++...+..... ....+. -++ .|++.++. ++ ...++.+|..+.....
T Consensus 97 ~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~---~~--~~~l~~~~~~~~~~~~ 167 (297)
T 2ojh_A 97 ALYAISDKVEF-GKSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIR---DQ--VFDIYSMDIDSGVETR 167 (297)
T ss_dssp SEEEEEECTTT-SSCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEE---TT--EEEEEEEETTTCCEEE
T ss_pred CEEEEEEeCCC-CcceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECC---CC--ceEEEEEECCCCcceE
Confidence 55555443211 34678889988877655543322 112222 244 45545544 33 2367777887777666
Q ss_pred ccCCCCCceeeeEEEECCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCC
Q psy2979 278 LAPMLIPRSGAAICALDSC-IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGW 354 (400)
Q Consensus 278 ~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~ 354 (400)
+...+... ......-+++ |++.+..++ ...++.+++.++....+..... ....... +++.+++++.+..
T Consensus 168 ~~~~~~~~-~~~~~s~dg~~l~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~ 239 (297)
T 2ojh_A 168 LTHGEGRN-DGPDYSPDGRWIYFNSSRTG----QMQIWRVRVDGSSVERITDSAY---GDWFPHPSPSGDKVVFVSYDAD 239 (297)
T ss_dssp CCCSSSCE-EEEEECTTSSEEEEEECTTS----SCEEEEEETTSSCEEECCCCSE---EEEEEEECTTSSEEEEEEEETT
T ss_pred cccCCCcc-ccceECCCCCEEEEEecCCC----CccEEEECCCCCCcEEEecCCc---ccCCeEECCCCCEEEEEEcCCC
Confidence 54433221 1111222555 444443222 4578899887777766654321 1112222 5554444443121
Q ss_pred CC-----CCCeEEEEECCCCcEEEecC
Q psy2979 355 DG-----YHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 355 ~~-----~~~~v~~yd~~~~~W~~~~~ 376 (400)
.. ....+++||..+++...+..
T Consensus 240 ~~~~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 240 VFDHPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp CCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred CCcccccCceEEEEEecCCCCceeeec
Confidence 11 23579999999987766543
No 89
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=97.51 E-value=0.04 Score=47.84 Aligned_cols=232 Identities=11% Similarity=0.079 Sum_probs=123.7
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCc--eEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCC--eEEccC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKV--WKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKI--LHSLGS 184 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~--w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~ 184 (400)
+.+++.|..+ ..+..+|+.+++ |+.-. +.....+.++.. ++. +++ ...+.+..||+ +++ |+--.+
T Consensus 5 ~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~--~~~~~~~~~~~~pdG~-ilv-s~~~~V~~~d~-~G~~~W~~~~~ 74 (276)
T 3no2_A 5 QHLLVGGSGW-----NKIAIINKDTKEIVWEYPL--EKGWECNSVAATKAGE-ILF-SYSKGAKMITR-DGRELWNIAAP 74 (276)
T ss_dssp CEEEEECTTC-----SEEEEEETTTTEEEEEEEC--CTTCCCCEEEECTTSC-EEE-ECBSEEEEECT-TSCEEEEEECC
T ss_pred CcEEEeeCCC-----CEEEEEECCCCeEEEEeCC--CccCCCcCeEECCCCC-EEE-eCCCCEEEECC-CCCEEEEEcCC
Confidence 3455555433 577889988876 65322 211123444444 555 777 55678999999 554 654332
Q ss_pred CCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCC-ceEEc--cCCCCc--ccccEEEEeCCEEEEEcCccccC
Q psy2979 185 LKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKN-EWSYI--EPMKLA--VTSPAVVAHEGMLYVTGGAILED 258 (400)
Q Consensus 185 ~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~--~~l~~~--~~~~~~~~~~~~iyv~GG~~~~~ 258 (400)
.....+++..+ ++.+++..+.. ...+..+|+..+ .|+.. ...+.+ .........++.+++....
T Consensus 75 --~~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---- 144 (276)
T 3no2_A 75 --AGCEMQTARILPDGNALVAWCGH----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---- 144 (276)
T ss_dssp --TTCEEEEEEECTTSCEEEEEEST----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT----
T ss_pred --CCccccccEECCCCCEEEEecCC----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC----
Confidence 11122333333 66666654321 235778888544 24332 111111 1222234456777776544
Q ss_pred CCCcceEEEEeCCCCc-eeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEEcc-CCcCcc
Q psy2979 259 GDGIEQVQRYNPKVNQ-WQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENT--WEYKS-PMKEKR 333 (400)
Q Consensus 259 ~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~-~~~~~~ 333 (400)
...+.+||+..+. |+.-.+ ..+ +++... ++.+++.+.. ...+..+|+.+++ |+.-. ..+..+
T Consensus 145 ---~~~v~~~d~~G~~~w~~~~~-~~~---~~~~~~~~g~~~v~~~~------~~~v~~~d~~tG~~~w~~~~~~~~~~~ 211 (276)
T 3no2_A 145 ---TSEVREIAPNGQLLNSVKLS-GTP---FSSAFLDNGDCLVACGD------AHCFVQLNLESNRIVRRVNANDIEGVQ 211 (276)
T ss_dssp ---TTEEEEECTTSCEEEEEECS-SCC---CEEEECTTSCEEEECBT------TSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred ---CCEEEEECCCCCEEEEEECC-CCc---cceeEcCCCCEEEEeCC------CCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence 2479999997443 765432 111 233334 7788887754 3579999999664 77643 222222
Q ss_pred -Ccc-eEEEE-CCEEEEEc--CccCC---CCCCCeEEEEECCCC-cEEEec
Q psy2979 334 -YRP-GIAVI-DGKIYVLG--GEEGW---DGYHDSIECYDVDND-SWEIMS 375 (400)
Q Consensus 334 -~~~-~~~~~-~~~lyv~G--G~~~~---~~~~~~v~~yd~~~~-~W~~~~ 375 (400)
... ++... +|.+|+.. |. .. ......++.+|+..+ .|+.-.
T Consensus 212 l~~~~~~~~~~~G~i~v~~~~g~-~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLYICNWQGH-DREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp CSEEEEEEECTTSCEEEEEECTT-CTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred ccccccceEcCCCCEEEEeccCc-cccccccCCceEEEECCCCCEEEEecC
Confidence 122 23333 88999987 43 21 001235677777554 377543
No 90
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.51 E-value=0.011 Score=51.85 Aligned_cols=188 Identities=12% Similarity=0.073 Sum_probs=101.0
Q ss_pred CCeEEEEE--------eecCEEEEEECCCCCeEEccCCC---CcceeeeEEEE-C-CEEEEEcccCCCCCCCeEEEEeCC
Q psy2979 156 GRNTIYCL--------DIVDIVYVAASMHKILHSLGSLK---FDFDVSGIAML-D-GFVYAVGGWDGSCRLDSVERYDPT 222 (400)
Q Consensus 156 ~~~~iyv~--------~~~~~~~~yd~~~~~w~~~~~~~---~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~ 222 (400)
++. +|+. .....+..||+.++++....... ....-.+++.. + +.+|+.+.. ..+.+||+.
T Consensus 28 ~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~------~~l~~~d~~ 100 (314)
T 1pjx_A 28 NGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTD 100 (314)
T ss_dssp TSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETT
T ss_pred CCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC------CCEEEEeCC
Confidence 445 7766 34567899998888887654310 11112233332 4 788887541 368999998
Q ss_pred CCceEEc-cCCCCc---ccccEEEE-eCCEEEEEcCccccCC---------C-C-cceEEEEeCCCCceeecc-CCCCCc
Q psy2979 223 KNEWSYI-EPMKLA---VTSPAVVA-HEGMLYVTGGAILEDG---------D-G-IEQVQRYNPKVNQWQDLA-PMLIPR 285 (400)
Q Consensus 223 ~~~W~~~-~~l~~~---~~~~~~~~-~~~~iyv~GG~~~~~~---------~-~-~~~v~~yd~~~~~W~~~~-~~~~~r 285 (400)
++...+ ...... ..-..++. -++.+|+.... ++ . . ...+++||+. .+...+. .+..+
T Consensus 101 -g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~- 174 (314)
T 1pjx_A 101 -GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA---GEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP- 174 (314)
T ss_dssp -SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECB---CBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE-
T ss_pred -CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecC---cccccccccccccCCCCeEEEECCC-CCEEEeccCCCCc-
Confidence 777665 322211 11223333 36789987643 20 0 0 3579999987 5554432 11122
Q ss_pred eeeeEEEE-----CC-eEEEEcCcCCCCCCCCeEEEEECC-CCeEEE---ccCCcCcc-CcceEEEE--CCEEEEEcCcc
Q psy2979 286 SGAAICAL-----DS-CIYVLGGWHASTENTNRVECYHIA-ENTWEY---KSPMKEKR-YRPGIAVI--DGKIYVLGGEE 352 (400)
Q Consensus 286 ~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~---~~~~~~~~-~~~~~~~~--~~~lyv~GG~~ 352 (400)
.+++.. ++ .+|+.... ...+++||+. ++++.. ...++... ..+..... +|++|+....
T Consensus 175 --~~i~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~- 245 (314)
T 1pjx_A 175 --NGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG- 245 (314)
T ss_dssp --EEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-
T ss_pred --ceEEEecccCCCCCEEEEEECC------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-
Confidence 223333 34 57777543 4689999876 444322 11222111 12222333 6888887532
Q ss_pred CCCCCCCeEEEEECCCCc
Q psy2979 353 GWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 353 ~~~~~~~~v~~yd~~~~~ 370 (400)
...|.+||+.+++
T Consensus 246 -----~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 246 -----SSHIEVFGPDGGQ 258 (314)
T ss_dssp -----TTEEEEECTTCBS
T ss_pred -----CCEEEEEcCCCCc
Confidence 2478999998544
No 91
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.50 E-value=0.052 Score=50.66 Aligned_cols=218 Identities=11% Similarity=0.065 Sum_probs=109.2
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE---CCEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML---DGFV 201 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~---~~~i 201 (400)
..+..||..+++-...-. .....-.+++...+..++.......+..+|..+++-...-.- ....-.++... ++..
T Consensus 142 g~i~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~ 219 (464)
T 3v7d_B 142 KMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEG-HNSTVRCLDIVEYKNIKY 219 (464)
T ss_dssp SCEEEEETTTTEEEEEEC-CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEEESSSCEE
T ss_pred CcEEEEECCCCcEEEEEe-CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECC-CCCccEEEEEecCCCCCE
Confidence 468888887765322111 111122333444443144335556788889887653221110 11111122222 4577
Q ss_pred EEEcccCCCCCCCeEEEEeCCCCceEEcc---------------------CCCCcccccEEEEeCCEEEEEcCccccCCC
Q psy2979 202 YAVGGWDGSCRLDSVERYDPTKNEWSYIE---------------------PMKLAVTSPAVVAHEGMLYVTGGAILEDGD 260 (400)
Q Consensus 202 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~---------------------~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~ 260 (400)
++.|+.++ .+..||..+.+-.... .+............++..++.|+. ++
T Consensus 220 l~s~s~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~---d~- 290 (464)
T 3v7d_B 220 IVTGSRDN-----TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY---DN- 290 (464)
T ss_dssp EEEEETTS-----CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEET---TS-
T ss_pred EEEEcCCC-----cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeC---CC-
Confidence 77777653 4777777765421110 000001111122345566677776 44
Q ss_pred CcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEE
Q psy2979 261 GIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAV 340 (400)
Q Consensus 261 ~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 340 (400)
.+..||..+.+-...-..............++..++.|+. ...+..||..+++-... +...........
T Consensus 291 ---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~ 359 (464)
T 3v7d_B 291 ---TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM------DTTIRIWDLENGELMYT--LQGHTALVGLLR 359 (464)
T ss_dssp ---CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET------TSCEEEEETTTTEEEEE--ECCCSSCEEEEE
T ss_pred ---eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEE--EeCCCCcEEEEE
Confidence 6899998766532221111111111222225667777765 45799999987763322 222222234455
Q ss_pred ECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 341 IDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 341 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.++..++.|+. + ..|.+||+.+..
T Consensus 360 ~~~~~l~s~s~-d-----g~v~vwd~~~~~ 383 (464)
T 3v7d_B 360 LSDKFLVSAAA-D-----GSIRGWDANDYS 383 (464)
T ss_dssp ECSSEEEEEET-T-----SEEEEEETTTCC
T ss_pred EcCCEEEEEeC-C-----CcEEEEECCCCc
Confidence 56777777776 2 468899998765
No 92
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.48 E-value=0.028 Score=49.90 Aligned_cols=177 Identities=11% Similarity=0.093 Sum_probs=91.4
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV 242 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~ 242 (400)
.....+..+|..+++-...-... +....+++. -+++.++.|+.+ ..+..||..+++-...-..... .-.+++
T Consensus 99 s~D~~i~lWd~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~g~~d-----g~v~i~~~~~~~~~~~~~~~~~-~v~~~~ 171 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSIDAG-PVDAWTLAFSPDSQYLATGTHV-----GKVNIFGVESGKKEYSLDTRGK-FILSIA 171 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEEECC-TTCCCCEEECTTSSEEEEECTT-----SEEEEEETTTCSEEEEEECSSS-CEEEEE
T ss_pred eCCCcEEEEECCCCCEEEEEeCC-CccEEEEEECCCCCEEEEEcCC-----CcEEEEEcCCCceeEEecCCCc-eEEEEE
Confidence 44567788888776532211110 111111222 255666667654 4578888877653321111111 111122
Q ss_pred -EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCcee-eeEE-EECCeEEEEcCcCCCCCCCCeEEEEECC
Q psy2979 243 -AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSG-AAIC-ALDSCIYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 243 -~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
.-+++.++.|+. ++ .+..||..+.+-... +...... .+++ .-++.+++.|+. ...+..||..
T Consensus 172 ~spdg~~lasg~~---dg----~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd~~~l~s~s~------dg~i~iwd~~ 236 (321)
T 3ow8_A 172 YSPDGKYLASGAI---DG----IINIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASD------DGYIKIYDVQ 236 (321)
T ss_dssp ECTTSSEEEEEET---TS----CEEEEETTTTEEEEE--ECCCSSCCCEEEECTTSCEEEEECT------TSCEEEEETT
T ss_pred ECCCCCEEEEEcC---CC----eEEEEECCCCcEEEE--EcccCCceeEEEEcCCCCEEEEEcC------CCeEEEEECC
Confidence 236777788877 54 688999877653221 1111111 1222 226777888876 4578899988
Q ss_pred CCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 320 ENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 320 ~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+...... +.........+.+ +++.++.|+. + ..|.+||..+.+
T Consensus 237 ~~~~~~~--~~~h~~~v~~~~~sp~~~~l~s~s~-D-----~~v~iwd~~~~~ 281 (321)
T 3ow8_A 237 HANLAGT--LSGHASWVLNVAFCPDDTHFVSSSS-D-----KSVKVWDVGTRT 281 (321)
T ss_dssp TCCEEEE--ECCCSSCEEEEEECTTSSEEEEEET-T-----SCEEEEETTTTE
T ss_pred CcceeEE--EcCCCCceEEEEECCCCCEEEEEeC-C-----CcEEEEeCCCCE
Confidence 7654322 1111111122333 5677777776 2 368889988764
No 93
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.47 E-value=0.047 Score=47.86 Aligned_cols=226 Identities=12% Similarity=0.086 Sum_probs=113.8
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcc
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDF 189 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r 189 (400)
..++.|+.+ ..+..++..+++....-.. ....-.+++.. ++..++.......+..||..+++-... +....
T Consensus 36 ~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~ 107 (312)
T 4ery_A 36 EWLASSSAD-----KLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHS 107 (312)
T ss_dssp SEEEEEETT-----SCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--EECCS
T ss_pred CEEEEeeCC-----CeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE--EcCCC
Confidence 344555544 3577888877765432211 11111233333 333133335556788889877653221 11111
Q ss_pred e-eeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE--eCCEEEEEcCccccCCCCcceE
Q psy2979 190 D-VSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 190 ~-~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v 265 (400)
. -.++.. -++..++.|+.+ ..+..||+.+++-... ++.......... -++.+++.|+. ++ .+
T Consensus 108 ~~v~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~---d~----~i 173 (312)
T 4ery_A 108 NYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSY---DG----LC 173 (312)
T ss_dssp SCEEEEEECSSSSEEEEEETT-----SCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEET---TS----CE
T ss_pred CCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeC---CC----cE
Confidence 1 111111 145666777765 3588899887754322 111111112222 25677778877 44 68
Q ss_pred EEEeCCCCceeecc-CCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc-CCcCccCcceE-EE-E
Q psy2979 266 QRYNPKVNQWQDLA-PMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKS-PMKEKRYRPGI-AV-I 341 (400)
Q Consensus 266 ~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~-~~-~ 341 (400)
..||..+.+....- ....+........-++..++.|+. ...+..||..+.+-...- ........... .. .
T Consensus 174 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL------DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp EEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET------TTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred EEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC------CCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence 89998776543221 111111111122226677777765 468999999887643321 11111111111 11 2
Q ss_pred CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 342 DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 342 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
++++++.|+. + ..|.+||..+++
T Consensus 248 ~~~~l~sg~~-d-----g~i~vwd~~~~~ 270 (312)
T 4ery_A 248 GGKWIVSGSE-D-----NLVYIWNLQTKE 270 (312)
T ss_dssp SSCEEEECCT-T-----SCEEEEETTTCC
T ss_pred CCcEEEEECC-C-----CEEEEEECCCch
Confidence 5777777776 2 468899988765
No 94
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.46 E-value=0.03 Score=51.36 Aligned_cols=244 Identities=11% Similarity=0.022 Sum_probs=122.7
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYA 203 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv 203 (400)
..+..||..+++............-.+++.. ++..+++......+..||..+++....-. ...........++.+++
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~l~ 190 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA--GHQARVGCLSWNRHVLS 190 (401)
T ss_dssp TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEETTEEE
T ss_pred CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec--CCCCceEEEEECCCEEE
Confidence 4788999988886654433322233344443 33413333555678889988765432211 11111222233566667
Q ss_pred EcccCCCCCCCeEEEEeCCCCce--EEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceee-cc
Q psy2979 204 VGGWDGSCRLDSVERYDPTKNEW--SYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD-LA 279 (400)
Q Consensus 204 ~GG~~~~~~~~~v~~yd~~~~~W--~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-~~ 279 (400)
.|+.+ ..+..||..+..- ..+....... .+++. -++..++.|+. ++ .+..||..+.+-.. +.
T Consensus 191 ~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~---d~----~v~iwd~~~~~~~~~~~ 256 (401)
T 4aez_A 191 SGSRS-----GAIHHHDVRIANHQIGTLQGHSSEV--CGLAWRSDGLQLASGGN---DN----VVQIWDARSSIPKFTKT 256 (401)
T ss_dssp EEETT-----SEEEEEETTSSSCEEEEEECCSSCE--EEEEECTTSSEEEEEET---TS----CEEEEETTCSSEEEEEC
T ss_pred EEcCC-----CCEEEEecccCcceeeEEcCCCCCe--eEEEEcCCCCEEEEEeC---CC----eEEEccCCCCCccEEec
Confidence 77755 4688888874321 1111111111 11222 26777788877 44 68999987654322 11
Q ss_pred CCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCE-EEEEcCccCC
Q psy2979 280 PMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGK-IYVLGGEEGW 354 (400)
Q Consensus 280 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~-lyv~GG~~~~ 354 (400)
.... .-.+++.. +..+++.||... ...+..||..+++....-... .....+.+ +++ +++.+|. .
T Consensus 257 ~~~~--~v~~~~~~p~~~~ll~~~~gs~----d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~-~- 325 (401)
T 4aez_A 257 NHNA--AVKAVAWCPWQSNLLATGGGTM----DKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSKEIMSTHGF-P- 325 (401)
T ss_dssp CCSS--CCCEEEECTTSTTEEEEECCTT----TCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECT-T-
T ss_pred CCcc--eEEEEEECCCCCCEEEEecCCC----CCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCCeEEEEeec-C-
Confidence 1111 11222222 446777764111 457999998877643322211 11222233 444 4444343 1
Q ss_pred CCCCCeEEEEECCCCcEEEecCCCCCC-CceeeEEEccccccccc
Q psy2979 355 DGYHDSIECYDVDNDSWEIMSHLPSAR-SWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 355 ~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~~~~~~~ 398 (400)
...|.+||..+........++... .-.+++...+..+++.+
T Consensus 326 ---dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 367 (401)
T 4aez_A 326 ---DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTA 367 (401)
T ss_dssp ---TCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEE
T ss_pred ---CCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 247889998887776654433222 22334444444555444
No 95
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.021 Score=52.29 Aligned_cols=224 Identities=13% Similarity=0.059 Sum_probs=106.9
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcc
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDF 189 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r 189 (400)
..++.|+.+ ..+..||........+..- ...-.+++.. ++..++.......+..+|..+++....-......
T Consensus 121 ~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 193 (425)
T 1r5m_A 121 NSIVTGVEN-----GELRLWNKTGALLNVLNFH--RAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETG 193 (425)
T ss_dssp SEEEEEETT-----SCEEEEETTSCEEEEECCC--CSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred CEEEEEeCC-----CeEEEEeCCCCeeeeccCC--CccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccC
Confidence 344555544 3577788433333333211 1112233333 3331333355567888888776543322211111
Q ss_pred --------------eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCEEEEEcCc
Q psy2979 190 --------------DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGMLYVTGGA 254 (400)
Q Consensus 190 --------------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~iyv~GG~ 254 (400)
...++....+..+++|+.+ ..+..||..+++-...-...... -.+++ .-++..+++|+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~i~~~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~ 267 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-----GAIFVYQITEKTPTGKLIGHHGP-ISVLEFNDTNKLLLSASD 267 (425)
T ss_dssp ------------CCCBSCCEEEETTEEEEECGG-----GCEEEEETTCSSCSEEECCCSSC-EEEEEEETTTTEEEEEET
T ss_pred ccceeeccccCCcceeeEEEEcCCCEEEEEcCC-----CeEEEEEcCCCceeeeeccCCCc-eEEEEECCCCCEEEEEcC
Confidence 0222333333345666654 45888998876432111111111 11222 225667777776
Q ss_pred cccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCcc
Q psy2979 255 ILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR 333 (400)
Q Consensus 255 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~ 333 (400)
++ .+..||..+.+....-.. ......++... ++ .++.|+. ...+..||..+.+-...-.. ..
T Consensus 268 ---d~----~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~------d~~i~i~d~~~~~~~~~~~~--~~ 330 (425)
T 1r5m_A 268 ---DG----TLRIWHGGNGNSQNCFYG-HSQSIVSASWVGDD-KVISCSM------DGSVRLWSLKQNTLLALSIV--DG 330 (425)
T ss_dssp ---TS----CEEEECSSSBSCSEEECC-CSSCEEEEEEETTT-EEEEEET------TSEEEEEETTTTEEEEEEEC--TT
T ss_pred ---CC----EEEEEECCCCccceEecC-CCccEEEEEECCCC-EEEEEeC------CCcEEEEECCCCcEeEeccc--CC
Confidence 43 688898766542221111 11122233333 45 6666665 46899999987764332211 11
Q ss_pred CcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 334 YRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 334 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.....+.+ ++++++.|+. + ..|.+||..+..
T Consensus 331 ~~i~~~~~s~~~~~l~~~~~-d-----g~i~i~~~~~~~ 363 (425)
T 1r5m_A 331 VPIFAGRISQDGQKYAVAFM-D-----GQVNVYDLKKLN 363 (425)
T ss_dssp CCEEEEEECTTSSEEEEEET-T-----SCEEEEECHHHH
T ss_pred ccEEEEEEcCCCCEEEEEEC-C-----CeEEEEECCCCc
Confidence 12222333 5677777765 2 368888887654
No 96
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=97.44 E-value=0.012 Score=52.19 Aligned_cols=209 Identities=12% Similarity=0.055 Sum_probs=105.1
Q ss_pred EEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CC-EEEEEcccCCCCCCCeEEEEeCCCCce-EE-ccCCCC
Q psy2979 160 IYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DG-FVYAVGGWDGSCRLDSVERYDPTKNEW-SY-IEPMKL 234 (400)
Q Consensus 160 iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~-~~~l~~ 234 (400)
+|+. .....+..+|+.+++....-..+.. ...++.- ++ .+|+.+..+ ..+..||+.+++. .. +..-..
T Consensus 12 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~ 84 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTLEILNQITLGYD--FVDTAITSDCSNVVVTSDFC-----QTLVQIETQLEPPKVVAIQEGQS 84 (331)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECCCC--EEEEEECSSSCEEEEEESTT-----CEEEEEECSSSSCEEEEEEECSS
T ss_pred EEEEecCCCeEEEEeCcccceeeeEEccCC--cceEEEcCCCCEEEEEeCCC-----CeEEEEECCCCceeEEecccCCC
Confidence 6666 4456899999998887654443321 1233322 44 577776533 3799999998874 22 222111
Q ss_pred cccccEEEE-e-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CC-eEEEEcCcCCCCCCC
Q psy2979 235 AVTSPAVVA-H-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DS-CIYVLGGWHASTENT 310 (400)
Q Consensus 235 ~~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~ 310 (400)
+ .++++. - +..+| ++.. ++. ...+..||..+.+....-+.. ...+.++.. ++ .+|+.+.. .
T Consensus 85 ~--~~~~~~s~dg~~l~-~~~~---~~~-~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~------~ 149 (331)
T 3u4y_A 85 S--MADVDITPDDQFAV-TVTG---LNH-PFNMQSYSFLKNKFISTIPIP--YDAVGIAISPNGNGLILIDRS------S 149 (331)
T ss_dssp C--CCCEEECTTSSEEE-ECCC---SSS-SCEEEEEETTTTEEEEEEECC--TTEEEEEECTTSSCEEEEEET------T
T ss_pred C--ccceEECCCCCEEE-EecC---CCC-cccEEEEECCCCCeEEEEECC--CCccceEECCCCCEEEEEecC------C
Confidence 2 221222 2 34566 4332 110 227999999887754432222 122333333 44 47777643 2
Q ss_pred Ce-EEEEECCCCe-EEEc--cCCcCccCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCCCcE-EEecCCCCCCC
Q psy2979 311 NR-VECYHIAENT-WEYK--SPMKEKRYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDNDSW-EIMSHLPSARS 382 (400)
Q Consensus 311 ~~-v~~yd~~~~~-W~~~--~~~~~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~ 382 (400)
.. +..|+...+. .... ...+.. .......+ ++ .+|+.+.. .+.|.+||+.+++. +.+..++....
T Consensus 150 ~~~i~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~------~~~v~v~d~~~~~~~~~~~~~~~~~~ 222 (331)
T 3u4y_A 150 ANTVRRFKIDADGVLFDTGQEFISGG-TRPFNITFTPDGNFAFVANLI------GNSIGILETQNPENITLLNAVGTNNL 222 (331)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEECSS-SSEEEEEECTTSSEEEEEETT------TTEEEEEECSSTTSCEEEEEEECSSC
T ss_pred CceEEEEEECCCCcEeecCCccccCC-CCccceEECCCCCEEEEEeCC------CCeEEEEECCCCcccceeeeccCCCC
Confidence 34 6666654321 1111 111111 12223333 45 48887644 25799999988765 11233333333
Q ss_pred ceeeEEEcccccccc
Q psy2979 383 WLGCVPLQIHKSQFV 397 (400)
Q Consensus 383 ~~~~~~~~~~~~~~~ 397 (400)
-.++++-.+..++++
T Consensus 223 ~~~~~~spdg~~l~v 237 (331)
T 3u4y_A 223 PGTIVVSRDGSTVYV 237 (331)
T ss_dssp CCCEEECTTSSEEEE
T ss_pred CceEEECCCCCEEEE
Confidence 345555555554443
No 97
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.42 E-value=0.055 Score=47.45 Aligned_cols=227 Identities=11% Similarity=-0.027 Sum_probs=108.9
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEE-ccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCC-
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKT-LSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLK- 186 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~-~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~- 186 (400)
+..++.|+.+ ..+..+|..+++-.. +..-..+ -.++... ++..++.......+..+|..+++-.. .+.
T Consensus 25 ~~~l~s~~~d-----g~v~lWd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~--~~~~ 95 (304)
T 2ynn_A 25 EPWVLTTLYS-----GRVELWNYETQVEVRSIQVTETP--VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV--DFEA 95 (304)
T ss_dssp SSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSC--EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE--EEEC
T ss_pred CCEEEEEcCC-----CcEEEEECCCCceeEEeeccCCc--EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEE--EEeC
Confidence 3445566654 467888887765332 1111111 1122232 33313333555678888987765321 111
Q ss_pred CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc-cEEEEe--CCEEEEEcCccccCCCCc
Q psy2979 187 FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS-PAVVAH--EGMLYVTGGAILEDGDGI 262 (400)
Q Consensus 187 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~-~~~~~~--~~~iyv~GG~~~~~~~~~ 262 (400)
....-.+++.. ++.+++.|+.+ ..+..||..++. .....+...... .+++.. ++.+++.|+. ++
T Consensus 96 h~~~v~~~~~~~~~~~l~sgs~D-----~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~---D~--- 163 (304)
T 2ynn_A 96 HPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DR--- 163 (304)
T ss_dssp CSSCEEEEEECSSSSEEEEEETT-----SCEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTCTTEEEEEET---TS---
T ss_pred CCCcEEEEEEcCCCCEEEEECCC-----CeEEEEECCCCc-chhhhhcccCCcEEEEEECCCCCCEEEEEeC---CC---
Confidence 11111122222 45666777765 357888876552 111111111111 122222 4567888887 54
Q ss_pred ceEEEEeCCCCceeeccCCCCCceeeeEEEE---CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEE
Q psy2979 263 EQVQRYNPKVNQWQDLAPMLIPRSGAAICAL---DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIA 339 (400)
Q Consensus 263 ~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 339 (400)
.+..||..+..-...-.....+....+... ++.+++.|+. ...+..||..+.+-.. .+.........+
T Consensus 164 -~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~------D~~i~iWd~~~~~~~~--~~~~h~~~v~~~ 234 (304)
T 2ynn_A 164 -TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD------DLTIKIWDYQTKSCVA--TLEGHMSNVSFA 234 (304)
T ss_dssp -EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET------TSEEEEEETTTTEEEE--EEECCSSCEEEE
T ss_pred -eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC------CCeEEEEeCCCCccce--eeCCCCCCEEEE
Confidence 788888754431111001111111111111 4556667765 4689999998875332 111111122223
Q ss_pred EE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEE
Q psy2979 340 VI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 340 ~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 372 (400)
.+ ++.+++.|+. + ..|.+||..+.+-.
T Consensus 235 ~~~p~~~~l~s~s~-D-----g~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 235 VFHPTLPIIISGSE-D-----GTLKIWNSSTYKVE 263 (304)
T ss_dssp EECSSSSEEEEEET-T-----SCEEEEETTTCCEE
T ss_pred EECCCCCEEEEEcC-C-----CeEEEEECCCCcee
Confidence 33 5667777776 3 35788998776533
No 98
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=97.36 E-value=0.063 Score=51.85 Aligned_cols=259 Identities=12% Similarity=0.048 Sum_probs=133.7
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD 188 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~ 188 (400)
+.+++.... ...+.++|..+++-.. .++....-|.++.. +++.+|+......+..+|+...+-+.+..++..
T Consensus 167 ~~~~V~~~~-----~~~V~viD~~t~~v~~--~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G 239 (567)
T 1qks_A 167 NLFSVTLRD-----AGQIALIDGSTYEIKT--VLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG 239 (567)
T ss_dssp GEEEEEETT-----TTEEEEEETTTCCEEE--EEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred ceEEEEeCC-----CCeEEEEECCCCeEEE--EEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC
Confidence 566666442 3588899998876442 22333333455554 444478776667899999852222222333222
Q ss_pred ceeeeEEEE-----CC-EEEEEcccCCCCCCCeEEEEeCCCCceEEc-c--CC--------CCcccccEEEEeCCEEEEE
Q psy2979 189 FDVSGIAML-----DG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYI-E--PM--------KLAVTSPAVVAHEGMLYVT 251 (400)
Q Consensus 189 r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~--~l--------~~~~~~~~~~~~~~~iyv~ 251 (400)
..-..++.. ++ .+|+..-.. .++..+|..+.+=... + .+ |.+|...-.+..++..+++
T Consensus 240 ~~P~~ia~s~~~~pDGk~l~v~n~~~-----~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv 314 (567)
T 1qks_A 240 SEARSIETSKMEGWEDKYAIAGAYWP-----PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 314 (567)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEET-----TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred CCCceeEEccccCCCCCEEEEEEccC-----CeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEE
Confidence 222233333 34 677764332 5678888776543221 1 11 1122222222233333333
Q ss_pred cCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEc---
Q psy2979 252 GGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSC-IYVLGGWHASTENTNRVECYHIAENTWEYK--- 326 (400)
Q Consensus 252 GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~--- 326 (400)
.-. + ...++..|..+.....+..++..+..|....- +++ +|+.... .+++..+|..+++-...
T Consensus 315 ~~~---~---~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~------sn~V~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 315 NVK---E---TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA------RNKLVVIDTKEGKLVAIEDT 382 (567)
T ss_dssp EET---T---TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG------GTEEEEEETTTTEEEEEEEC
T ss_pred Eec---C---CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC------CCeEEEEECCCCcEEEEEec
Confidence 211 1 34788888877665555555555555554433 444 4444333 57899999999874322
Q ss_pred -cCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCc-----EEEecCCCCC-CCceeeEEEcccccccc
Q psy2979 327 -SPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDS-----WEIMSHLPSA-RSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 327 -~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-----W~~~~~~~~~-r~~~~~~~~~~~~~~~~ 397 (400)
...|.+..+.....- ++.+|+.+-. + ...|.++|..+.. |+.+..++.. .....+.+..+..++++
T Consensus 383 gg~~Phpg~g~~~~~p~~g~v~~t~~~-g----~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v 456 (567)
T 1qks_A 383 GGQTPHPGRGANFVHPTFGPVWATSHM-G----DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV 456 (567)
T ss_dssp SSSSBCCTTCEEEEETTTEEEEEEEBS-S----SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred cCcCCCCccceeeECCCCCcEEEeCCC-C----CCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEE
Confidence 223333222222111 3678877633 1 2468888876633 8887665542 22233444455555554
No 99
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.36 E-value=0.095 Score=48.82 Aligned_cols=148 Identities=11% Similarity=0.159 Sum_probs=82.2
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceee
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD 277 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 277 (400)
++..++.|+.+ ..+..||..+.+-...-.............-++..++.|+. ++ .+..||..+.+-.
T Consensus 279 ~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---dg----~i~vwd~~~~~~~- 345 (464)
T 3v7d_B 279 HGNIVVSGSYD-----NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM---DT----TIRIWDLENGELM- 345 (464)
T ss_dssp ETTEEEEEETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET---TS----CEEEEETTTTEEE-
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC---CC----cEEEEECCCCcEE-
Confidence 45556666655 35888998876543321111111111122235667777776 44 6899998766422
Q ss_pred ccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCC
Q psy2979 278 LAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGY 357 (400)
Q Consensus 278 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~ 357 (400)
..+............++..++.|+. ...+..||+.+..-...... .......+...++++.+.|+.
T Consensus 346 -~~~~~h~~~v~~~~~~~~~l~s~s~------dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~d------ 411 (464)
T 3v7d_B 346 -YTLQGHTALVGLLRLSDKFLVSAAA------DGSIRGWDANDYSRKFSYHH-TNLSAITTFYVSDNILVSGSE------ 411 (464)
T ss_dssp -EEECCCSSCEEEEEECSSEEEEEET------TSEEEEEETTTCCEEEEEEC-TTCCCEEEEEECSSEEEEEET------
T ss_pred -EEEeCCCCcEEEEEEcCCEEEEEeC------CCcEEEEECCCCceeeeecC-CCCccEEEEEeCCCEEEEecC------
Confidence 2222222223344556777777776 46899999987653222111 111222233447777777653
Q ss_pred CCeEEEEECCCCcEEE
Q psy2979 358 HDSIECYDVDNDSWEI 373 (400)
Q Consensus 358 ~~~v~~yd~~~~~W~~ 373 (400)
..|.+||..+++-..
T Consensus 412 -g~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 412 -NQFNIYNLRSGKLVH 426 (464)
T ss_dssp -TEEEEEETTTCCEEE
T ss_pred -CeEEEEECCCCcEEe
Confidence 478999999886544
No 100
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.35 E-value=0.015 Score=54.01 Aligned_cols=223 Identities=14% Similarity=0.053 Sum_probs=115.8
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDF 189 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r 189 (400)
+..++.|+.+ ..+.+||..+++-...-... ...-.++. .++..++.......+..+|..+++.... +....
T Consensus 143 ~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~h-~~~v~~l~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h~ 213 (435)
T 1p22_A 143 DQKIVSGLRD-----NTIKIWDKNTLECKRILTGH-TGSVLCLQ-YDERVIITGSSDSTVRVWDVNTGEMLNT--LIHHC 213 (435)
T ss_dssp SSEEEEEESS-----SCEEEEESSSCCEEEEECCC-SSCEEEEE-CCSSEEEEEETTSCEEEEESSSCCEEEE--ECCCC
T ss_pred CCEEEEEeCC-----CeEEEEeCCCCeEEEEEcCC-CCcEEEEE-ECCCEEEEEcCCCeEEEEECCCCcEEEE--EcCCC
Confidence 3445556544 46888888776643221111 11112222 2555133335556788899887754321 11111
Q ss_pred eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEc-cCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEE
Q psy2979 190 DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI-EPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY 268 (400)
Q Consensus 190 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 268 (400)
........++..++.|+.+ ..+..||..+.+-... ..+........+...++..++.|+. ++ .+..|
T Consensus 214 ~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~---dg----~i~vw 281 (435)
T 1p22_A 214 EAVLHLRFNNGMMVTCSKD-----RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG---DR----TIKVW 281 (435)
T ss_dssp SCEEEEECCTTEEEEEETT-----SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEET---TS----EEEEE
T ss_pred CcEEEEEEcCCEEEEeeCC-----CcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeC---CC----eEEEE
Confidence 1122223345566667755 3588888877642211 1111111122233346667777776 43 78999
Q ss_pred eCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEE
Q psy2979 269 NPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVL 348 (400)
Q Consensus 269 d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~ 348 (400)
|..+.+-... +............++..++.|+. ...+..||..+++-... +........+...+++.++.
T Consensus 282 d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s 351 (435)
T 1p22_A 282 NTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSS------DNTIRLWDIECGACLRV--LEGHEELVRCIRFDNKRIVS 351 (435)
T ss_dssp ETTTCCEEEE--EECCSSCEEEEEEETTEEEEEET------TSCEEEEETTTCCEEEE--ECCCSSCEEEEECCSSEEEE
T ss_pred ECCcCcEEEE--EcCCCCcEEEEEeCCCEEEEEeC------CCeEEEEECCCCCEEEE--EeCCcCcEEEEEecCCEEEE
Confidence 9877643221 11111122334446777777775 45799999987653321 11111222334447888888
Q ss_pred cCccCCCCCCCeEEEEECCCC
Q psy2979 349 GGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 349 GG~~~~~~~~~~v~~yd~~~~ 369 (400)
|+. + ..|.+||..+.
T Consensus 352 g~~-d-----g~i~vwd~~~~ 366 (435)
T 1p22_A 352 GAY-D-----GKIKVWDLVAA 366 (435)
T ss_dssp EET-T-----SCEEEEEHHHH
T ss_pred EeC-C-----CcEEEEECCCC
Confidence 876 3 36788887543
No 101
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.34 E-value=0.076 Score=47.31 Aligned_cols=208 Identities=11% Similarity=0.185 Sum_probs=111.5
Q ss_pred CceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCC-CCc-ceeeeEEEECCEEEEEcccCCCCC
Q psy2979 135 KVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSL-KFD-FDVSGIAMLDGFVYAVGGWDGSCR 212 (400)
Q Consensus 135 ~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~-~~~-r~~~~~~~~~~~iyv~GG~~~~~~ 212 (400)
..|..+. +|......++...+...+|++.....++.-.-...+|+.+... +.+ ....++...++.+|++|. .
T Consensus 25 ~~W~~~~-~~~~~~~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~-~---- 98 (327)
T 2xbg_A 25 NPWEAIQ-LPTTATILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGE-P---- 98 (327)
T ss_dssp CCEEEEE-CSCSSCEEEEEESSSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEE-T----
T ss_pred CCceEee-cCCCCcEEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEEC-C----
Confidence 4688765 2333333444444433277764444555554445689987642 222 233344445678888753 1
Q ss_pred CCeEEEEeCCCCceEEccC---CCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceee
Q psy2979 213 LDSVERYDPTKNEWSYIEP---MKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGA 288 (400)
Q Consensus 213 ~~~v~~yd~~~~~W~~~~~---l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~ 288 (400)
..+++-+-.-.+|+.+.. +|.. ...++ .-++.+|+.|.. ..+++-.-...+|+.+.... +...+
T Consensus 99 -g~i~~S~DgG~tW~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~--------g~v~~S~DgG~tW~~~~~~~-~~~~~ 166 (327)
T 2xbg_A 99 -PIMLHTTDGGQSWSQIPLDPKLPGS--PRLIKALGNGSAEMITNV--------GAIYRTKDSGKNWQALVQEA-IGVMR 166 (327)
T ss_dssp -TEEEEESSTTSSCEECCCCTTCSSC--EEEEEEEETTEEEEEETT--------CCEEEESSTTSSEEEEECSC-CCCEE
T ss_pred -CeEEEECCCCCCceECccccCCCCC--eEEEEEECCCCEEEEeCC--------ccEEEEcCCCCCCEEeecCC-CcceE
Confidence 235543334578999864 2322 12333 346888887754 14666555567899986432 22334
Q ss_pred eEEEE-CCeEEEEcCcCCCCCCCCeEEEEE-CCCCeEEEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEE
Q psy2979 289 AICAL-DSCIYVLGGWHASTENTNRVECYH-IAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYD 365 (400)
Q Consensus 289 ~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd-~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd 365 (400)
.++.. ++.+|++|. ...+++-+ .....|+.+.. +.....+.++.. ++.+|+++.. ..++..+
T Consensus 167 ~~~~~~~~~~~~~g~-------~G~~~~S~d~gG~tW~~~~~-~~~~~~~~~~~~~~g~~~~~~~~-------G~~~~s~ 231 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSS-------RGSFYSTWEPGQTAWEPHNR-TTSRRLHNMGFTPDGRLWMIVNG-------GKIAFSD 231 (327)
T ss_dssp EEEECTTSCEEEEET-------TSSEEEEECTTCSSCEEEEC-CSSSCEEEEEECTTSCEEEEETT-------TEEEEEE
T ss_pred EEEEcCCCcEEEEEC-------CCcEEEEeCCCCCceeECCC-CCCCccceeEECCCCCEEEEeCC-------ceEEEec
Confidence 44443 567776663 22345443 33678998853 223333333332 6788877643 1355553
Q ss_pred CC-CCcEEEec
Q psy2979 366 VD-NDSWEIMS 375 (400)
Q Consensus 366 ~~-~~~W~~~~ 375 (400)
.. ..+|+.+.
T Consensus 232 ~D~G~tW~~~~ 242 (327)
T 2xbg_A 232 PDNSENWGELL 242 (327)
T ss_dssp TTEEEEECCCB
T ss_pred CCCCCeeEecc
Confidence 33 56798874
No 102
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=97.34 E-value=0.059 Score=47.77 Aligned_cols=235 Identities=11% Similarity=0.058 Sum_probs=120.0
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeec-----CEEEEEECCCCCeEEc-
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIV-----DIVYVAASMHKILHSL- 182 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~-----~~~~~yd~~~~~w~~~- 182 (400)
+.+++.+..+ ..+..||+.+++...+...+ ...-.+++.. ++. +|+.... ..++.+|+.++.....
T Consensus 56 g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~ 128 (333)
T 2dg1_A 56 GQLFLLDVFE-----GNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDII 128 (333)
T ss_dssp SCEEEEETTT-----CEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEE
T ss_pred CCEEEEECCC-----CEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEE
Confidence 3455554432 46888999888876543211 1223344444 556 8887443 4899999988876532
Q ss_pred cCCCCcceeeeEEEE-CCEEEEEcccC-CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCC-EEEEEcCccccC
Q psy2979 183 GSLKFDFDVSGIAML-DGFVYAVGGWD-GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEG-MLYVTGGAILED 258 (400)
Q Consensus 183 ~~~~~~r~~~~~~~~-~~~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~-~iyv~GG~~~~~ 258 (400)
........-..++.. ++.+|+..... .......++++|+.+++...+..- .....+.+. -++ .+|+....
T Consensus 129 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~---- 202 (333)
T 2dg1_A 129 EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDEKVLWVTETT---- 202 (333)
T ss_dssp CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTSSEEEEEEGG----
T ss_pred ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCCCEEEEEeCC----
Confidence 222111111222222 67888754321 111235689999988776554210 001122222 244 58887543
Q ss_pred CCCcceEEEEeCCCC--ceeecc-----CCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc
Q psy2979 259 GDGIEQVQRYNPKVN--QWQDLA-----PMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK 330 (400)
Q Consensus 259 ~~~~~~v~~yd~~~~--~W~~~~-----~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 330 (400)
...+++||+.++ ...... .++....-.+++.- ++.+|+.... ...+.+||+....-..+. .+
T Consensus 203 ---~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~------~~~v~~~d~~g~~~~~~~-~~ 272 (333)
T 2dg1_A 203 ---ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG------QGRVLVFNKRGYPIGQIL-IP 272 (333)
T ss_dssp ---GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET------TTEEEEECTTSCEEEEEE-CT
T ss_pred ---CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC------CCEEEEECCCCCEEEEEE-cC
Confidence 247899998542 232211 11111111222222 6788887632 357999999655444432 22
Q ss_pred Cc---c-CcceEEEE--C-CEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 331 EK---R-YRPGIAVI--D-GKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 331 ~~---~-~~~~~~~~--~-~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
.. . .....+.+ + +.||+.... +.......++++++..
T Consensus 273 ~~~~g~~~~~~~~~~~~dg~~L~v~~~~-g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 273 GRDEGHMLRSTHPQFIPGTNQLIICSND-IEMGGGSMLYTVNGFA 316 (333)
T ss_dssp TGGGTCSCBCCEEEECTTSCEEEEEEEC-GGGTCCEEEEEEECSS
T ss_pred CCccccccCcceEEECCCCCEEEEEeCc-cCCCCCceEEEEeccc
Confidence 11 0 02233344 3 478876543 2222234678887653
No 103
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.34 E-value=0.028 Score=50.20 Aligned_cols=241 Identities=13% Similarity=0.177 Sum_probs=118.0
Q ss_pred ceEEEEEcCCCceEEccCCc-ccceeeeEEEE-CCeEEEEEe-ecCEEEEEECC-CCCeEEccCCCC------cc----e
Q psy2979 125 RSVEGFCVKTKVWKTLSCLP-FAISKHGLVVS-GRNTIYCLD-IVDIVYVAASM-HKILHSLGSLKF------DF----D 190 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~-~~~~~~~~~~~-~~~~iyv~~-~~~~~~~yd~~-~~~w~~~~~~~~------~r----~ 190 (400)
..+..||...+++..+..+. .......++.. ++..+|+.. ....+..||.. .++...+..... +| .
T Consensus 63 ~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~ 142 (347)
T 3hfq_A 63 GGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSH 142 (347)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCC
T ss_pred ceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCC
Confidence 56888888777766554322 12222334444 344266664 44667778874 334333322111 11 1
Q ss_pred eeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCC-CCceEEccC--CCCc-ccccEEEEeCCE-EEEEcCccccCCCCcce
Q psy2979 191 VSGIAML-DGFVYAVGGWDGSCRLDSVERYDPT-KNEWSYIEP--MKLA-VTSPAVVAHEGM-LYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 191 ~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~--l~~~-~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~ 264 (400)
-+.++.. ++++|+.+..+ ..+..||.. +++...... .+.. ...+.+..-+++ +|+.+.. + ..
T Consensus 143 ~~~~~~spdg~l~v~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~---~----~~ 210 (347)
T 3hfq_A 143 IHYTDLTPDNRLAVIDLGS-----DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL---S----SQ 210 (347)
T ss_dssp EEEEEECTTSCEEEEETTT-----TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT---T----TE
T ss_pred ceEEEECCCCcEEEEeCCC-----CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCC---C----CE
Confidence 1222222 56677764322 468888887 566554432 1111 111122223554 8887554 2 24
Q ss_pred EEEE--eCCCCceeecc---CCCCC----ceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECC-CCeEEEccCCcCc
Q psy2979 265 VQRY--NPKVNQWQDLA---PMLIP----RSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIA-ENTWEYKSPMKEK 332 (400)
Q Consensus 265 v~~y--d~~~~~W~~~~---~~~~~----r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~ 332 (400)
+..| +..+.+++.+. ..+.. .....++.. ++ .||+.+.. .+.+..||.. ++.++.+...+..
T Consensus 211 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~~~~~ 284 (347)
T 3hfq_A 211 IASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG------YNTLAVFAVTADGHLTLIQQISTE 284 (347)
T ss_dssp EEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET------TTEEEEEEECGGGCEEEEEEEECS
T ss_pred EEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC------CCEEEEEEECCCCcEEEeEEEecC
Confidence 4555 44456655433 22321 112222222 55 47776543 4578888875 3355555544442
Q ss_pred cCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEE--ECCCCcEEEecC---CCCCCCceeeEEEccc
Q psy2979 333 RYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECY--DVDNDSWEIMSH---LPSARSWLGCVPLQIH 392 (400)
Q Consensus 333 ~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~y--d~~~~~W~~~~~---~~~~r~~~~~~~~~~~ 392 (400)
......+.+ ++ .||+.+.. + +.+.+| |+++++.+.+.. +|.| .+.+.++..
T Consensus 285 ~~~~~~~~~spdg~~l~v~~~~-~-----~~v~v~~~d~~tg~l~~~~~~~~~p~p---~~~~~~~~~ 343 (347)
T 3hfq_A 285 GDFPRDFDLDPTEAFVVVVNQN-T-----DNATLYARDLTSGKLSLLQKDVTVPEG---VCVRFLEHH 343 (347)
T ss_dssp SSCCCEEEECTTSSEEEEEETT-T-----TEEEEEEECTTTCCEEEEEEEEECTTE---EEEEECC--
T ss_pred CCCcCeEEECCCCCEEEEEEcC-C-----CcEEEEEEeCCCCeEEecccceecCCC---cEEEehhhc
Confidence 222333444 45 47666543 1 345555 888888887653 4433 555555543
No 104
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.33 E-value=0.079 Score=47.28 Aligned_cols=225 Identities=10% Similarity=0.037 Sum_probs=108.7
Q ss_pred EEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCC--eEEccCCCC-
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKF- 187 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~- 187 (400)
.++.|+.+ ..+.++|..+++-...-.... ..-.+++.. ++..+........+..||..+.. ......+..
T Consensus 69 ~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h 142 (340)
T 1got_B 69 LLLSASQD-----GKLIIWDSYTTNKVHAIPLRS-SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH 142 (340)
T ss_dssp EEEEEETT-----TEEEEEETTTCCEEEEEECSS-SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECC
T ss_pred EEEEEeCC-----CcEEEEECCCCCcceEeecCC-ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCC
Confidence 44455544 467888877665332111111 111222332 33312222445667788876543 111111111
Q ss_pred cceeeeEE-EECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceE
Q psy2979 188 DFDVSGIA-MLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 188 ~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v 265 (400)
...-.++. .-++. ++.|+.+ ..+..||+.+++-...-.-.... -.+++. -++.+++.|+. ++ .+
T Consensus 143 ~~~v~~~~~~~~~~-l~s~s~d-----~~i~~wd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~sg~~---d~----~v 208 (340)
T 1got_B 143 TGYLSCCRFLDDNQ-IVTSSGD-----TTCALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVSGAC---DA----SA 208 (340)
T ss_dssp SSCEEEEEEEETTE-EEEEETT-----SCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEET---TS----CE
T ss_pred CccEEEEEECCCCc-EEEEECC-----CcEEEEECCCCcEEEEEcCCCCc-eEEEEECCCCCEEEEEeC---CC----cE
Confidence 11111122 22555 4445544 45888999887643321111111 112222 36778888887 54 68
Q ss_pred EEEeCCCCceeeccCCCCCce-eeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--
Q psy2979 266 QRYNPKVNQWQDLAPMLIPRS-GAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-- 341 (400)
Q Consensus 266 ~~yd~~~~~W~~~~~~~~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-- 341 (400)
..||..+..-... +..... -.+++. -++..++.|+. ...+..||..+++-...-..+........+.+
T Consensus 209 ~~wd~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~------d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 209 KLWDVREGMCRQT--FTGHESDINAICFFPNGNAFATGSD------DATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp EEEETTTCSEEEE--ECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred EEEECCCCeeEEE--EcCCcCCEEEEEEcCCCCEEEEEcC------CCcEEEEECCCCcEEEEEccCCcccceEEEEECC
Confidence 8899876543221 111111 112222 26777888876 45788999887764322121111112223333
Q ss_pred CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 342 DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 342 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
++++++.|+. + ..|.+||..+.+
T Consensus 281 ~g~~l~~g~~-d-----~~i~vwd~~~~~ 303 (340)
T 1got_B 281 SGRLLLAGYD-D-----FNCNVWDALKAD 303 (340)
T ss_dssp TSSEEEEEET-T-----SEEEEEETTTCC
T ss_pred CCCEEEEECC-C-----CeEEEEEcccCc
Confidence 6777787776 2 468899987653
No 105
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.32 E-value=0.065 Score=47.49 Aligned_cols=216 Identities=16% Similarity=0.124 Sum_probs=107.0
Q ss_pred EEEEeccCCCcccceEEEEEcCCCceEE-ccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCc
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKT-LSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFD 188 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~w~~-~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~ 188 (400)
+++.|+.+ ..+..+|..+++-.. +..-+. ...+++.. ++. .++. .....+..||..+++-...-.. ..
T Consensus 94 ~l~s~s~D-----~~i~lWd~~~~~~~~~~~~~~~--~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~-~~ 164 (321)
T 3ow8_A 94 IAASSSLD-----AHIRLWDLENGKQIKSIDAGPV--DAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDT-RG 164 (321)
T ss_dssp EEEEEETT-----SEEEEEETTTTEEEEEEECCTT--CCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEEC-SS
T ss_pred EEEEEeCC-----CcEEEEECCCCCEEEEEeCCCc--cEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecC-CC
Confidence 44455544 467888887765332 211111 11123333 333 3333 4446677888776643211111 11
Q ss_pred ceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEc-cCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceE
Q psy2979 189 FDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI-EPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 189 r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v 265 (400)
..-.+++. -+++.++.|+.+ ..+..||..+++-... ..-..+ -.+++ .-++.+++.|+. ++ .+
T Consensus 165 ~~v~~~~~spdg~~lasg~~d-----g~i~iwd~~~~~~~~~~~~h~~~--v~~l~~spd~~~l~s~s~---dg----~i 230 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAID-----GIINIFDIATGKLLHTLEGHAMP--IRSLTFSPDSQLLVTASD---DG----YI 230 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECCCSSC--CCEEEECTTSCEEEEECT---TS----CE
T ss_pred ceEEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEEcccCCc--eeEEEEcCCCCEEEEEcC---CC----eE
Confidence 11112222 256677777765 3588899988754322 111111 11222 236778888887 54 68
Q ss_pred EEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--
Q psy2979 266 QRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-- 341 (400)
Q Consensus 266 ~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-- 341 (400)
..||..+...... +.........+.. ++..++.|+. ...+..||..+.+-... +.........+.+
T Consensus 231 ~iwd~~~~~~~~~--~~~h~~~v~~~~~sp~~~~l~s~s~------D~~v~iwd~~~~~~~~~--~~~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 231 KIYDVQHANLAGT--LSGHASWVLNVAFCPDDTHFVSSSS------DKSVKVWDVGTRTCVHT--FFDHQDQVWGVKYNG 300 (321)
T ss_dssp EEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEE--ECCCSSCEEEEEECT
T ss_pred EEEECCCcceeEE--EcCCCCceEEEEECCCCCEEEEEeC------CCcEEEEeCCCCEEEEE--EcCCCCcEEEEEECC
Confidence 8999876554322 1111111112222 6677777776 45788999887764332 1111111122333
Q ss_pred CCEEEEEcCccCCCCCCCeEEEEEC
Q psy2979 342 DGKIYVLGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 342 ~~~lyv~GG~~~~~~~~~~v~~yd~ 366 (400)
+++.++.||. + ..|.+||.
T Consensus 301 ~g~~l~s~~~-d-----~~i~vwd~ 319 (321)
T 3ow8_A 301 NGSKIVSVGD-D-----QEIHIYDC 319 (321)
T ss_dssp TSSEEEEEET-T-----CCEEEEEC
T ss_pred CCCEEEEEeC-C-----CeEEEEeC
Confidence 5666677766 2 35677763
No 106
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=97.29 E-value=0.029 Score=48.73 Aligned_cols=202 Identities=11% Similarity=-0.042 Sum_probs=104.5
Q ss_pred eecCEEEEEECCCCC--eEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCCccccc
Q psy2979 164 DIVDIVYVAASMHKI--LHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKLAVTSP 239 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~--w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~~~~ 239 (400)
.....+..+|+.+++ |+.-..-. .........-++++++.+. ..+..||+ ++ .|+.-.+ .....+
T Consensus 12 ~~~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~~-------~~V~~~d~-~G~~~W~~~~~--~~~~~~ 80 (276)
T 3no2_A 12 SGWNKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSYS-------KGAKMITR-DGRELWNIAAP--AGCEMQ 80 (276)
T ss_dssp TTCSEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEECB-------SEEEEECT-TSCEEEEEECC--TTCEEE
T ss_pred CCCCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeCC-------CCEEEECC-CCCEEEEEcCC--CCcccc
Confidence 334567777876665 54332210 1122222333778888432 45899999 45 4765432 111122
Q ss_pred EEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCc-eeecc--CCCCC--ceeeeEEEECCeEEEEcCcCCCCCCCCeE
Q psy2979 240 AVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ-WQDLA--PMLIP--RSGAAICALDSCIYVLGGWHASTENTNRV 313 (400)
Q Consensus 240 ~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~~~--~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~v 313 (400)
++. ..++++++..+. + ...++.+|+.... |+.-. ..+.+ .........++.+++.... ...+
T Consensus 81 ~~~~~~dG~~lv~~~~---~---~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~------~~~v 148 (276)
T 3no2_A 81 TARILPDGNALVAWCG---H---PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA------TSEV 148 (276)
T ss_dssp EEEECTTSCEEEEEES---T---TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT------TTEE
T ss_pred ccEECCCCCEEEEecC---C---CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC------CCEE
Confidence 333 346777766432 1 1368888885553 44321 11111 1112233346777766543 4689
Q ss_pred EEEECCCC-eEEEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCc--EEEec-CCCCCCC--ceee
Q psy2979 314 ECYHIAEN-TWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEIMS-HLPSARS--WLGC 386 (400)
Q Consensus 314 ~~yd~~~~-~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~-~~~~~r~--~~~~ 386 (400)
.+||++.+ .|+.-.+ ...+++... +|.+++.+.. ...|..+|+.+++ |+.-. .++..+. -.++
T Consensus 149 ~~~d~~G~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~------~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~ 218 (276)
T 3no2_A 149 REIAPNGQLLNSVKLS----GTPFSSAFLDNGDCLVACGD------AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQL 218 (276)
T ss_dssp EEECTTSCEEEEEECS----SCCCEEEECTTSCEEEECBT------TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEE
T ss_pred EEECCCCCEEEEEECC----CCccceeEcCCCCEEEEeCC------CCeEEEEeCcCCcEEEEecCCCCCCccccccccc
Confidence 99999733 3765432 112234444 7888887764 2469999999664 76642 2232222 2455
Q ss_pred EEEccccccccc
Q psy2979 387 VPLQIHKSQFVD 398 (400)
Q Consensus 387 ~~~~~~~~~~~~ 398 (400)
+++.+..+++.+
T Consensus 219 ~~~~~G~i~v~~ 230 (276)
T 3no2_A 219 FPLQNGGLYICN 230 (276)
T ss_dssp EECTTSCEEEEE
T ss_pred eEcCCCCEEEEe
Confidence 555555554443
No 107
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.29 E-value=0.084 Score=46.76 Aligned_cols=212 Identities=13% Similarity=0.096 Sum_probs=118.8
Q ss_pred eEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEEe-ecCEEEEEECCC----CCeEEcc--CCCCcceeeeEEE
Q psy2979 126 SVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCLD-IVDIVYVAASMH----KILHSLG--SLKFDFDVSGIAM 196 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~~-~~~~~~~yd~~~----~~w~~~~--~~~~~r~~~~~~~ 196 (400)
.+..+|+...+...+. +.....++++.. ++. ||+.. ....++.+++.. .....+- .+..| .++++
T Consensus 11 ~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p---~glav 84 (316)
T 1ijq_A 11 EVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAV 84 (316)
T ss_dssp SEEEEETTSCCCEEEE--CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCSCC---CEEEE
T ss_pred eEEEEECCCcceEehh--cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc---CEEEE
Confidence 5677788777665442 222333556554 456 99883 457899999876 2222221 12222 23443
Q ss_pred --ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEcc--CCCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 197 --LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE--PMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 197 --~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
.++.||+.-.. ...++++|+....-..+. .+..++ ++++ .++.||+.... . ...++++++
T Consensus 85 d~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~~~~~P~---~iavdp~~g~ly~~d~~---~---~~~I~~~~~ 150 (316)
T 1ijq_A 85 DWIHSNIYWTDSV-----LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWG---T---PAKIKKGGL 150 (316)
T ss_dssp ETTTTEEEEEETT-----TTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECS---S---SCEEEEEET
T ss_pred eecCCeEEEEECC-----CCEEEEEeCCCCceEEEEECCCCCcc---eEEeCCCCCEEEEEccC---C---CCeEEEEcC
Confidence 47899997432 357889998765433332 232222 3344 37899998532 1 247999998
Q ss_pred CCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc-CccCcceEEEECCEEEE
Q psy2979 271 KVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK-EKRYRPGIAVIDGKIYV 347 (400)
Q Consensus 271 ~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~lyv 347 (400)
....-+.+..... ..-.+++.- ++.||+.... ...++++|+....-..+...+ ....-.++++.++.||+
T Consensus 151 dG~~~~~~~~~~~-~~P~gla~d~~~~~lY~~D~~------~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~ 223 (316)
T 1ijq_A 151 NGVDIYSLVTENI-QWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFW 223 (316)
T ss_dssp TSCCEEEEECSSC-SCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEE
T ss_pred CCCCeEEEEECCC-CCceEEEEeccCCEEEEEECC------CCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEE
Confidence 7654443321111 112334443 6899998754 568999998754333332211 11223466667899999
Q ss_pred EcCccCCCCCCCeEEEEECCCCc
Q psy2979 348 LGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 348 ~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.-.. ...|.++|+.+++
T Consensus 224 ~d~~------~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 224 TDII------NEAIFSANRLTGS 240 (316)
T ss_dssp EETT------TTEEEEEETTTCC
T ss_pred EECC------CCeEEEEeCCCCc
Confidence 7633 3578888876543
No 108
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.28 E-value=0.036 Score=55.89 Aligned_cols=226 Identities=11% Similarity=-0.027 Sum_probs=111.0
Q ss_pred EEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcce
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFD 190 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~ 190 (400)
.+++|+.+ ..+.+||..+++....-... ...-.+++.. ++..|.+......+..||..+++....-.. ....
T Consensus 27 ~la~~~~~-----g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~ 99 (814)
T 3mkq_A 27 WVLTTLYS-----GRVEIWNYETQVEVRSIQVT-ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDY 99 (814)
T ss_dssp EEEEEETT-----SEEEEEETTTTEEEEEEECC-SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSC
T ss_pred EEEEEeCC-----CEEEEEECCCCceEEEEecC-CCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCC
Confidence 44555533 46888998776543221111 1111233333 333133335556788899887765332111 1111
Q ss_pred eeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccc-ccEEEEe--CCEEEEEcCccccCCCCcceEE
Q psy2979 191 VSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVT-SPAVVAH--EGMLYVTGGAILEDGDGIEQVQ 266 (400)
Q Consensus 191 ~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~ 266 (400)
-.+++.. ++..++.|+.+ ..+..||..++ |.....+..... -.+++.. ++..+++|+. ++ .+.
T Consensus 100 v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg----~v~ 166 (814)
T 3mkq_A 100 IRSIAVHPTKPYVLSGSDD-----LTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DR----TVK 166 (814)
T ss_dssp EEEEEECSSSSEEEEEETT-----SEEEEEEGGGT-SEEEEEEECCSSCEEEEEEETTEEEEEEEEET---TS----EEE
T ss_pred EEEEEEeCCCCEEEEEcCC-----CEEEEEECCCC-ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC---CC----eEE
Confidence 1112222 45555566644 45888888765 222111111111 1122222 5667777776 43 789
Q ss_pred EEeCCCCceeeccCCCCCceeeeEEEE---CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--
Q psy2979 267 RYNPKVNQWQDLAPMLIPRSGAAICAL---DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-- 341 (400)
Q Consensus 267 ~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-- 341 (400)
.||..+..-...-..........+... ++..++.|+. ...+..||..+++-... +.........+..
T Consensus 167 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD------DLTIKIWDYQTKSCVAT--LEGHMSNVSFAVFHP 238 (814)
T ss_dssp EEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT------TSEEEEEETTTTEEEEE--EECCSSCEEEEEECS
T ss_pred EEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC------CCEEEEEECCCCcEEEE--EcCCCCCEEEEEEcC
Confidence 999865542221111111111222222 6677777776 46899999887763322 1111111222233
Q ss_pred CCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 342 DGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 342 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
++.+++.|+. + ..|.+||+.+.+-
T Consensus 239 ~~~~l~~~~~-d-----g~v~vwd~~~~~~ 262 (814)
T 3mkq_A 239 TLPIIISGSE-D-----GTLKIWNSSTYKV 262 (814)
T ss_dssp SSSEEEEEET-T-----SCEEEEETTTCSE
T ss_pred CCCEEEEEeC-C-----CeEEEEECCCCcE
Confidence 5667777765 2 3588899887553
No 109
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=97.28 E-value=0.026 Score=49.88 Aligned_cols=140 Identities=12% Similarity=0.027 Sum_probs=70.6
Q ss_pred ceEEEEEcCCCceEEccCCcccc-eeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCc----ceeeeEEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAI-SKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFD----FDVSGIAML 197 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~-~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~----r~~~~~~~~ 197 (400)
..+..+|+.+++....-.++... ..+.++.. ++..+|+. .....+..+|+.+++-...-+.+.+ ..-..++..
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s 90 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS 90 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEEC
Confidence 47888998887654322222210 12334443 44336666 3346899999988765432221110 011122222
Q ss_pred -CC-EEEEEcccC---CCC---CCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCC-EEEEEcCccccCCCCcceEEE
Q psy2979 198 -DG-FVYAVGGWD---GSC---RLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEG-MLYVTGGAILEDGDGIEQVQR 267 (400)
Q Consensus 198 -~~-~iyv~GG~~---~~~---~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~v~~ 267 (400)
++ .+|+..... ... ....+..||+.+++....-+.+.. -..++. -++ .+|+.++ .+..
T Consensus 91 ~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~----------~i~~ 158 (337)
T 1pby_B 91 PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ--ITMLAWARDGSKLYGLGR----------DLHV 158 (337)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS--CCCEEECTTSSCEEEESS----------SEEE
T ss_pred CCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC--cceeEECCCCCEEEEeCC----------eEEE
Confidence 34 677764210 011 236799999988765433222211 122222 244 4777633 4888
Q ss_pred EeCCCCcee
Q psy2979 268 YNPKVNQWQ 276 (400)
Q Consensus 268 yd~~~~~W~ 276 (400)
||+.+.+-.
T Consensus 159 ~d~~~~~~~ 167 (337)
T 1pby_B 159 MDPEAGTLV 167 (337)
T ss_dssp EETTTTEEE
T ss_pred EECCCCcEe
Confidence 898777643
No 110
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.27 E-value=0.11 Score=47.54 Aligned_cols=211 Identities=11% Similarity=0.078 Sum_probs=120.2
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEE--ECC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM--LDG 199 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~--~~~ 199 (400)
..+..+++.......+.. ......+++.. ++. ||+. .....++.+++.....+.+...... .-.++++ .++
T Consensus 96 ~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~-~p~glavd~~~g 171 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLN--NLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEEVVSTGLE-SPGGLAVDWVHD 171 (386)
T ss_dssp SCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEEEEECSSCS-CCCCEEEETTTT
T ss_pred ccceeeccCCCcEEEEec--CCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcEEEEeCCCC-CccEEEEEeCCC
Confidence 356777777666554432 12223455554 455 8888 4456899999987765554321111 1123333 378
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEcc--CCCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIE--PMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
.||+.-.. ...++++++....-..+. .+..+ .++++ .++.||+..-. . ...++++++....-
T Consensus 172 ~lY~~d~~-----~~~I~~~~~dg~~~~~l~~~~l~~P---~giavdp~~g~ly~td~~---~---~~~I~r~~~dG~~~ 237 (386)
T 3v65_B 172 KLYWTDSG-----TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWG---N---TPRIEASSMDGSGR 237 (386)
T ss_dssp EEEEEETT-----TTEEEECBTTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEECS---S---SCEEEEEETTSCSC
T ss_pred eEEEEcCC-----CCeEEEEeCCCCceEEeecCCCCCC---cEEEEEcCCCeEEEeccC---C---CCEEEEEeCCCCCc
Confidence 99987432 246888888765433332 22222 13344 37899988533 1 25799999876544
Q ss_pred eecc--CCCCCceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCc
Q psy2979 276 QDLA--PMLIPRSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 276 ~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
+.+. .+..| .+++. .++.||+.... ...|+++|+....-..+.... ...-.++++.++.||+.--.
T Consensus 238 ~~~~~~~~~~P---nGlavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~~~~-~~~P~giav~~~~ly~td~~ 307 (386)
T 3v65_B 238 RIIADTHLFWP---NGLTIDYAGRRMYWVDAK------HHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDWH 307 (386)
T ss_dssp EEEECSSCSCE---EEEEEEGGGTEEEEEETT------TTEEEEECTTSCSCEEEECSS-CSSEEEEEEETTEEEEEETT
T ss_pred EEEEECCCCCe---eeEEEeCCCCEEEEEECC------CCEEEEEeCCCCeeEEEEECC-CCCceEEEEECCEEEEeeCC
Confidence 4332 22222 23343 37899999754 578999998754322222111 11234566678999998633
Q ss_pred cCCCCCCCeEEEEECCCC
Q psy2979 352 EGWDGYHDSIECYDVDND 369 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~~ 369 (400)
...|.++|..++
T Consensus 308 ------~~~V~~~~~~~G 319 (386)
T 3v65_B 308 ------TKSINSANKFTG 319 (386)
T ss_dssp ------TTEEEEEETTTC
T ss_pred ------CCeEEEEECCCC
Confidence 357888885443
No 111
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.25 E-value=0.079 Score=46.89 Aligned_cols=224 Identities=14% Similarity=0.061 Sum_probs=120.0
Q ss_pred ceEEEEEcCCCceEEccCCc------------------ccceeeeEEEE--CCeEEEEEeecCEEEEEECCCCCeEEccC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLP------------------FAISKHGLVVS--GRNTIYCLDIVDIVYVAASMHKILHSLGS 184 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~------------------~~~~~~~~~~~--~~~~iyv~~~~~~~~~yd~~~~~w~~~~~ 184 (400)
..+..||+..+++..+.... ....-++++.. ++. ||+......+..+|+.++..+.+..
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~ 118 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLAT 118 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEES
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecc
Confidence 46788888877665442110 01123566666 456 9998666779999988766555443
Q ss_pred CCCc---ceeeeEEEE--CCEEEEEcccCC------------CCCCCeEEEEeCCCCceEEccC-CCCcccccEEEEe-C
Q psy2979 185 LKFD---FDVSGIAML--DGFVYAVGGWDG------------SCRLDSVERYDPTKNEWSYIEP-MKLAVTSPAVVAH-E 245 (400)
Q Consensus 185 ~~~~---r~~~~~~~~--~~~iyv~GG~~~------------~~~~~~v~~yd~~~~~W~~~~~-l~~~~~~~~~~~~-~ 245 (400)
.... ..-..+++- ++.||+.-.... ......+++||+.+++...+.. +. .-..++.- +
T Consensus 119 ~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~---~p~gia~~~d 195 (322)
T 2fp8_A 119 SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELH---VPGGAEVSAD 195 (322)
T ss_dssp EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEES---CCCEEEECTT
T ss_pred cCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCc---cCcceEECCC
Confidence 2111 111223333 568998642210 0122568999998887654421 11 11233333 3
Q ss_pred C-EEEEEcCccccCCCCcceEEEEeCCCC---ceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCC-----CCCCCeEEE
Q psy2979 246 G-MLYVTGGAILEDGDGIEQVQRYNPKVN---QWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHAS-----TENTNRVEC 315 (400)
Q Consensus 246 ~-~iyv~GG~~~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~-----~~~~~~v~~ 315 (400)
+ .+|+.-.. ...+++|+..+. .++.+..++.| .+++.- +|.||+....... .. ...+.+
T Consensus 196 g~~lyv~d~~-------~~~I~~~~~~~~~~~~~~~~~~~~gP---~gi~~d~~G~l~va~~~~~~~~~~~~~-~~~v~~ 264 (322)
T 2fp8_A 196 SSFVLVAEFL-------SHQIVKYWLEGPKKGTAEVLVKIPNP---GNIKRNADGHFWVSSSEELDGNMHGRV-DPKGIK 264 (322)
T ss_dssp SSEEEEEEGG-------GTEEEEEESSSTTTTCEEEEEECSSE---EEEEECTTSCEEEEEEEETTSSTTSCE-EEEEEE
T ss_pred CCEEEEEeCC-------CCeEEEEECCCCcCCccceEEeCCCC---CCeEECCCCCEEEEecCcccccccCCC-ccEEEE
Confidence 3 58887443 347999998753 33333323221 223322 6788887632100 00 246999
Q ss_pred EECCCCeEEEccCCc-C-ccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 316 YHIAENTWEYKSPMK-E-KRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 316 yd~~~~~W~~~~~~~-~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
||+....-..+.... . .....+++.-+++|||.... .+.|.+|++..+
T Consensus 265 ~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~------~~~i~~~~~~~~ 314 (322)
T 2fp8_A 265 FDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLF------HGSVGILVYDKK 314 (322)
T ss_dssp ECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSS------CSEEEEEEC---
T ss_pred ECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecC------CCceEEEecccc
Confidence 999765544443211 1 11223344458999997644 357889988654
No 112
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.25 E-value=0.11 Score=47.10 Aligned_cols=189 Identities=11% Similarity=-0.009 Sum_probs=92.4
Q ss_pred EEEEeecCEEEEEECCCCC------eEEccCCCCc---ceeeeEEEE-----CCEE-EEEcccCCCCCCCeEEEEeCCC-
Q psy2979 160 IYCLDIVDIVYVAASMHKI------LHSLGSLKFD---FDVSGIAML-----DGFV-YAVGGWDGSCRLDSVERYDPTK- 223 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~------w~~~~~~~~~---r~~~~~~~~-----~~~i-yv~GG~~~~~~~~~v~~yd~~~- 223 (400)
++.......+..||..+++ +..+...+.. ..-.+++.. ++.. ++.|+.+ ..+..||..+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 158 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-----GTTYIWKFHPF 158 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-----SCEEEEEEESS
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-----CcEEEEeCCcc
Confidence 3333555678888877766 5555443211 122222222 4555 6777655 3477777665
Q ss_pred -----Cc---eEEccCC--------CCcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCC-C-C-
Q psy2979 224 -----NE---WSYIEPM--------KLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM-L-I- 283 (400)
Q Consensus 224 -----~~---W~~~~~l--------~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~-~-~- 283 (400)
.+ |.....+ .....-.+++.. ++ ++++|+. ++ .+..||..+.+-...-.. . .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~---dg----~i~i~d~~~~~~~~~~~~~~~h~ 230 (397)
T 1sq9_A 159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN---NG----TVQISELSTLRPLYNFESQHSMI 230 (397)
T ss_dssp SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT---TS----EEEEEETTTTEEEEEEECCC---
T ss_pred ccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC---CC----cEEEEECCCCceeEEEecccccc
Confidence 21 1110011 011112233332 56 7777776 43 799999887653322111 0 0
Q ss_pred --CceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcC-----------ccCcceEEEE--CCEEEE
Q psy2979 284 --PRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKE-----------KRYRPGIAVI--DGKIYV 347 (400)
Q Consensus 284 --~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-----------~~~~~~~~~~--~~~lyv 347 (400)
.....+++.. ++.+++.|+.++. ...+..||..+.+-...-..+. .......+.+ +++.++
T Consensus 231 ~~~~~i~~i~~~~~~~~l~~~~~d~~---~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 307 (397)
T 1sq9_A 231 NNSNSIRSVKFSPQGSLLAIAHDSNS---FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 307 (397)
T ss_dssp CCCCCEEEEEECSSTTEEEEEEEETT---EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred ccCCccceEEECCCCCEEEEEecCCC---CceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE
Confidence 1111222222 6677777765210 1589999988765322111100 1112223333 566777
Q ss_pred EcCccCCCCCCCeEEEEECCCCc
Q psy2979 348 LGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 348 ~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.|+. + ..|.+||..+.+
T Consensus 308 ~~~~-d-----g~i~iwd~~~~~ 324 (397)
T 1sq9_A 308 SAGW-D-----GKLRFWDVKTKE 324 (397)
T ss_dssp EEET-T-----SEEEEEETTTTE
T ss_pred EEeC-C-----CeEEEEEcCCCc
Confidence 7765 2 478999998764
No 113
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.23 E-value=0.12 Score=47.23 Aligned_cols=217 Identities=15% Similarity=0.117 Sum_probs=108.5
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYA 203 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv 203 (400)
..+..||..+++....-. .....-.++..-++. ++.......+..+|.....-....-......-.+++.. ++..++
T Consensus 156 g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 233 (401)
T 4aez_A 156 GLVDIYDVESQTKLRTMA-GHQARVGCLSWNRHV-LSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLA 233 (401)
T ss_dssp SCEEEEETTTCCEEEEEC-CCSSCEEEEEEETTE-EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CeEEEEECcCCeEEEEec-CCCCceEEEEECCCE-EEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEE
Confidence 367788877765432211 111111233333333 44446667888899874331111100111111122222 566777
Q ss_pred EcccCCCCCCCeEEEEeCCCCceEEc-cCCCCcccccEEEEe--CCEEEEEcC--ccccCCCCcceEEEEeCCCCceeec
Q psy2979 204 VGGWDGSCRLDSVERYDPTKNEWSYI-EPMKLAVTSPAVVAH--EGMLYVTGG--AILEDGDGIEQVQRYNPKVNQWQDL 278 (400)
Q Consensus 204 ~GG~~~~~~~~~v~~yd~~~~~W~~~-~~l~~~~~~~~~~~~--~~~iyv~GG--~~~~~~~~~~~v~~yd~~~~~W~~~ 278 (400)
.|+.+ ..+..||..+.+-... ...... -.+++.. ++.+++.|| . + ..+..||..+.+-...
T Consensus 234 s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~--v~~~~~~p~~~~ll~~~~gs~---d----~~i~i~d~~~~~~~~~ 299 (401)
T 4aez_A 234 SGGND-----NVVQIWDARSSIPKFTKTNHNAA--VKAVAWCPWQSNLLATGGGTM---D----KQIHFWNAATGARVNT 299 (401)
T ss_dssp EEETT-----SCEEEEETTCSSEEEEECCCSSC--CCEEEECTTSTTEEEEECCTT---T----CEEEEEETTTCCEEEE
T ss_pred EEeCC-----CeEEEccCCCCCccEEecCCcce--EEEEEECCCCCCEEEEecCCC---C----CEEEEEECCCCCEEEE
Confidence 77765 3588899887653321 111111 1223322 456777765 3 3 3789999877654322
Q ss_pred cCCCCCceeeeEEEE-CCeEEEE-cCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCC
Q psy2979 279 APMLIPRSGAAICAL-DSCIYVL-GGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGW 354 (400)
Q Consensus 279 ~~~~~~r~~~~~~~~-~~~iyv~-GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~ 354 (400)
-.... .-.+++.. ++..++. +|.. ...+..||..+........++........+.+ +++.++.||. +
T Consensus 300 ~~~~~--~v~~~~~s~~~~~l~~~~g~~-----dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~-d- 370 (401)
T 4aez_A 300 VDAGS--QVTSLIWSPHSKEIMSTHGFP-----DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS-D- 370 (401)
T ss_dssp EECSS--CEEEEEECSSSSEEEEEECTT-----TCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT-T-
T ss_pred EeCCC--cEEEEEECCCCCeEEEEeecC-----CCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC-C-
Confidence 22111 11222222 4444444 3422 45788999888777665443332222223333 6777777776 2
Q ss_pred CCCCCeEEEEECCCCc
Q psy2979 355 DGYHDSIECYDVDNDS 370 (400)
Q Consensus 355 ~~~~~~v~~yd~~~~~ 370 (400)
..|.+||..+++
T Consensus 371 ----g~i~iw~~~~~~ 382 (401)
T 4aez_A 371 ----ENLKFWRVYDGD 382 (401)
T ss_dssp ----SEEEEEECCC--
T ss_pred ----CcEEEEECCCCc
Confidence 468899988764
No 114
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.21 E-value=0.016 Score=53.88 Aligned_cols=216 Identities=12% Similarity=0.031 Sum_probs=106.6
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEc-cCCCCcceeeeEEEECCEEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSL-GSLKFDFDVSGIAMLDGFVYA 203 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~-~~~~~~r~~~~~~~~~~~iyv 203 (400)
..+.++|..+++....-.. ....-.++...++. ++.......+..+|..++.-... ..+............++..++
T Consensus 193 g~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 270 (435)
T 1p22_A 193 STVRVWDVNTGEMLNTLIH-HCEAVLHLRFNNGM-MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV 270 (435)
T ss_dssp SCEEEEESSSCCEEEEECC-CCSCEEEEECCTTE-EEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE
T ss_pred CeEEEEECCCCcEEEEEcC-CCCcEEEEEEcCCE-EEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEE
Confidence 4677888877664321111 11111222222333 44446667788888876542211 111111111122223555566
Q ss_pred EcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCC
Q psy2979 204 VGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI 283 (400)
Q Consensus 204 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 283 (400)
.|+.+ ..+..||..+++-... +........+...++..++.|+. ++ .+..||..+.+-.. .+..
T Consensus 271 s~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~g~~---dg----~i~iwd~~~~~~~~--~~~~ 334 (435)
T 1p22_A 271 SASGD-----RTIKVWNTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSS---DN----TIRLWDIECGACLR--VLEG 334 (435)
T ss_dssp EEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEEETTEEEEEET---TS----CEEEEETTTCCEEE--EECC
T ss_pred EEeCC-----CeEEEEECCcCcEEEE--EcCCCCcEEEEEeCCCEEEEEeC---CC----eEEEEECCCCCEEE--EEeC
Confidence 66654 4688899887753322 11111222334446677777777 44 68999987654221 1221
Q ss_pred CceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe----------EEEccCCcCccCcceEEEECCEEEEEcCccC
Q psy2979 284 PRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT----------WEYKSPMKEKRYRPGIAVIDGKIYVLGGEEG 353 (400)
Q Consensus 284 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~----------W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~ 353 (400)
.......+..++..++.|+. ...+..||..+.. -..+.... .....+..+++.++.||. +
T Consensus 335 h~~~v~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~~~l~s~s~-D 404 (435)
T 1p22_A 335 HEELVRCIRFDNKRIVSGAY------DGKIKVWDLVAALDPRAPAGTLCLRTLVEHS---GRVFRLQFDEFQIVSSSH-D 404 (435)
T ss_dssp CSSCEEEEECCSSEEEEEET------TSCEEEEEHHHHTSTTSCTTTTEEEEECCCS---SCCCCEEECSSCEEECCS-S
T ss_pred CcCcEEEEEecCCEEEEEeC------CCcEEEEECCCCCCccccccchheeeccCCC---CCeEEEEeCCCEEEEEeC-C
Confidence 11222334447888888876 4568888875432 12221111 111233447777788876 2
Q ss_pred CCCCCCeEEEEECCCCcEEE
Q psy2979 354 WDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 354 ~~~~~~~v~~yd~~~~~W~~ 373 (400)
..|.+||..++.-..
T Consensus 405 -----g~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 405 -----DTILIWDFLNDPAAQ 419 (435)
T ss_dssp -----SEEEEEC--------
T ss_pred -----CEEEEEECCCCCCcc
Confidence 478899988765443
No 115
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.20 E-value=0.093 Score=45.84 Aligned_cols=213 Identities=9% Similarity=0.013 Sum_probs=112.7
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCC-
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKF- 187 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~- 187 (400)
+.+++.+.. ...+..||+.+++...+. .+ ..-.+++.. ++. +++.. ...++.||+.+++++.+.....
T Consensus 25 ~~l~~~d~~-----~~~i~~~d~~~~~~~~~~-~~--~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~~~ 94 (297)
T 3g4e_A 25 NSLLFVDIP-----AKKVCRWDSFTKQVQRVT-MD--APVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATVDND 94 (297)
T ss_dssp TEEEEEETT-----TTEEEEEETTTCCEEEEE-CS--SCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEECCTT
T ss_pred CEEEEEECC-----CCEEEEEECCCCcEEEEe-CC--CceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEecCCC
Confidence 455555432 257889999887654332 12 112234444 455 66653 5789999999988877654321
Q ss_pred -c--ceeeeEEEECCEEEEEcccCC------CCCCCeEEEEeCCCCceEEcc-CCCCcccccEEEEe--CCEEEEEcCcc
Q psy2979 188 -D--FDVSGIAMLDGFVYAVGGWDG------SCRLDSVERYDPTKNEWSYIE-PMKLAVTSPAVVAH--EGMLYVTGGAI 255 (400)
Q Consensus 188 -~--r~~~~~~~~~~~iyv~GG~~~------~~~~~~v~~yd~~~~~W~~~~-~l~~~~~~~~~~~~--~~~iyv~GG~~ 255 (400)
+ +.....+.-++++|+..-... ......++++|+.. +...+. .+..+ .+.+.. +..+|+....
T Consensus 95 ~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~p---ngi~~spdg~~lyv~~~~- 169 (297)
T 3g4e_A 95 KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDIS---NGLDWSLDHKIFYYIDSL- 169 (297)
T ss_dssp CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESBE---EEEEECTTSCEEEEEEGG-
T ss_pred CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccccc---cceEEcCCCCEEEEecCC-
Confidence 2 222222222678887431111 12234688888863 333321 11111 123332 3468888655
Q ss_pred ccCCCCcceEEEEeC--CCCceee---ccCCCCC-ceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC
Q psy2979 256 LEDGDGIEQVQRYNP--KVNQWQD---LAPMLIP-RSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP 328 (400)
Q Consensus 256 ~~~~~~~~~v~~yd~--~~~~W~~---~~~~~~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 328 (400)
...+++||. .+..... +..++.. ..-.+++. -+|.||+.... ...+.+||+.+++....-.
T Consensus 170 ------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~------~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 170 ------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN------GGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp ------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET------TTEEEEECTTTCCEEEEEE
T ss_pred ------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC------CCEEEEEcCCCceEEEEEE
Confidence 347888875 4444321 1122211 11123333 26789987632 3579999999776544333
Q ss_pred CcCccCcceEEEEC----CEEEEEcCc
Q psy2979 329 MKEKRYRPGIAVID----GKIYVLGGE 351 (400)
Q Consensus 329 ~~~~~~~~~~~~~~----~~lyv~GG~ 351 (400)
+|. .....++++ +.|||....
T Consensus 238 ~p~--~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 238 LPV--DKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp CSS--SBEEEEEEESGGGCEEEEEEBC
T ss_pred CCC--CCceEEEEeCCCCCEEEEEcCC
Confidence 442 234555554 479998754
No 116
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.20 E-value=0.088 Score=45.13 Aligned_cols=195 Identities=15% Similarity=0.100 Sum_probs=109.5
Q ss_pred eeeEEEE--CCeEEEEEe-ecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCC
Q psy2979 149 KHGLVVS--GRNTIYCLD-IVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTK 223 (400)
Q Consensus 149 ~~~~~~~--~~~~iyv~~-~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 223 (400)
.++++.. ++. ||+.. ....+..+|+....-..+.+... ..-.+++.- ++.||+.-.. ...+.++++..
T Consensus 38 ~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~~~~lyv~d~~-----~~~I~~~~~~g 110 (267)
T 1npe_A 38 IIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLGRTIFWTDSQ-----LDRIEVAKMDG 110 (267)
T ss_dssp EEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC-CCEEEEEEETTTTEEEEEETT-----TTEEEEEETTS
T ss_pred EEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCC-CCccEEEEEecCCeEEEEECC-----CCEEEEEEcCC
Confidence 3556665 345 99884 45689999998765333322111 122234433 5799987542 35788998876
Q ss_pred CceEEccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEE
Q psy2979 224 NEWSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYV 299 (400)
Q Consensus 224 ~~W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv 299 (400)
..-..+.+...... ..++.. ++.||+.... .. ...++++++....-+.+..... ..-.+++.- ++.||+
T Consensus 111 ~~~~~~~~~~~~~P-~~i~vd~~~g~lyv~~~~---~~--~~~I~~~~~dg~~~~~~~~~~~-~~P~gia~d~~~~~lyv 183 (267)
T 1npe_A 111 TQRRVLFDTGLVNP-RGIVTDPVRGNLYWTDWN---RD--NPKIETSHMDGTNRRILAQDNL-GLPNGLTFDAFSSQLCW 183 (267)
T ss_dssp CSCEEEECSSCSSE-EEEEEETTTTEEEEEECC---SS--SCEEEEEETTSCCCEEEECTTC-SCEEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCCc-cEEEEeeCCCEEEEEECC---CC--CcEEEEEecCCCCcEEEEECCC-CCCcEEEEcCCCCEEEE
Confidence 54333322111111 233333 6899998532 11 2478888886544333322111 112333333 568999
Q ss_pred EcCcCCCCCCCCeEEEEECCCCeEEEc-cCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEE
Q psy2979 300 LGGWHASTENTNRVECYHIAENTWEYK-SPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 300 ~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 372 (400)
.... .+.+.+||+....-..+ .... .-.+++.-++.||+.... .+.|.++|+.+++-.
T Consensus 184 ~d~~------~~~I~~~~~~g~~~~~~~~~~~---~P~gi~~d~~~lyva~~~------~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 184 VDAG------THRAECLNPAQPGRRKVLEGLQ---YPFAVTSYGKNLYYTDWK------TNSVIAMDLAISKEM 242 (267)
T ss_dssp EETT------TTEEEEEETTEEEEEEEEECCC---SEEEEEEETTEEEEEETT------TTEEEEEETTTTEEE
T ss_pred EECC------CCEEEEEecCCCceEEEecCCC---CceEEEEeCCEEEEEECC------CCeEEEEeCCCCCce
Confidence 8754 56899999976543222 2221 223555668999997643 357999999887543
No 117
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.18 E-value=0.12 Score=46.09 Aligned_cols=234 Identities=9% Similarity=0.124 Sum_probs=123.9
Q ss_pred CCceEEccC-Ccc-cceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCC-CcceeeeEEE-ECCEEEEEcccCC
Q psy2979 134 TKVWKTLSC-LPF-AISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLK-FDFDVSGIAM-LDGFVYAVGGWDG 209 (400)
Q Consensus 134 ~~~w~~~~~-~~~-~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~-~~~~iyv~GG~~~ 209 (400)
-..|..+.. .+. .....+++..++. +|++.....++.-+-.-.+|+.+.... .+-....++. -++.+|+.|..
T Consensus 65 G~tW~~~~~~~~~~~~~~~~i~~~~~~-~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-- 141 (327)
T 2xbg_A 65 GQTWEPRTLVLDHSDYRFNSVSFQGNE-GWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNV-- 141 (327)
T ss_dssp TSSCEECCCCCSCCCCEEEEEEEETTE-EEEEEETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETT--
T ss_pred CCCCeECCCCCCCCCccEEEEEecCCe-EEEEECCCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCC--
Confidence 347998753 222 2233455555666 888754455665444457899877532 2222233333 36788887641
Q ss_pred CCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEe-CCCCceeeccCCCCCcee
Q psy2979 210 SCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYN-PKVNQWQDLAPMLIPRSG 287 (400)
Q Consensus 210 ~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd-~~~~~W~~~~~~~~~r~~ 287 (400)
..+++-+-.-.+|+.+..... ...++++.. ++.+|++|.. + .+++-+ ....+|+.+.. +.+...
T Consensus 142 ----g~v~~S~DgG~tW~~~~~~~~-~~~~~~~~~~~~~~~~~g~~----G----~~~~S~d~gG~tW~~~~~-~~~~~~ 207 (327)
T 2xbg_A 142 ----GAIYRTKDSGKNWQALVQEAI-GVMRNLNRSPSGEYVAVSSR----G----SFYSTWEPGQTAWEPHNR-TTSRRL 207 (327)
T ss_dssp ----CCEEEESSTTSSEEEEECSCC-CCEEEEEECTTSCEEEEETT----S----SEEEEECTTCSSCEEEEC-CSSSCE
T ss_pred ----ccEEEEcCCCCCCEEeecCCC-cceEEEEEcCCCcEEEEECC----C----cEEEEeCCCCCceeECCC-CCCCcc
Confidence 135554444668998864222 222333333 5667766533 1 355543 33688998853 333344
Q ss_pred eeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECC-CCeEEEccCC--cCccCcceEEEE-CCEEEEEcCccCCCCCCCeEE
Q psy2979 288 AAICAL-DSCIYVLGGWHASTENTNRVECYHIA-ENTWEYKSPM--KEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIE 362 (400)
Q Consensus 288 ~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~--~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~ 362 (400)
+.++.. ++.+|+++. ...++..+.. ...|+.+... +.....+.+... ++.+|++|+. ..++
T Consensus 208 ~~~~~~~~g~~~~~~~-------~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~-------g~i~ 273 (327)
T 2xbg_A 208 HNMGFTPDGRLWMIVN-------GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA-------GALL 273 (327)
T ss_dssp EEEEECTTSCEEEEET-------TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEEST-------TCEE
T ss_pred ceeEECCCCCEEEEeC-------CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCC-------CeEE
Confidence 444433 678888764 2245555333 5679876532 222122222222 6789998764 2344
Q ss_pred EEECCCCcEEEecC-CCCCCCceeeEEEccccccccc
Q psy2979 363 CYDVDNDSWEIMSH-LPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 363 ~yd~~~~~W~~~~~-~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
+=.-...+|+.+.. .+.+-..+.++..++..++.+|
T Consensus 274 ~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G 310 (327)
T 2xbg_A 274 CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILG 310 (327)
T ss_dssp EESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEEC
T ss_pred EeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEc
Confidence 43333568998863 2333344555555555544443
No 118
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=97.15 E-value=0.12 Score=45.87 Aligned_cols=226 Identities=13% Similarity=0.153 Sum_probs=123.2
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCC--CeEEccCC------CCcc-eeee
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHK--ILHSLGSL------KFDF-DVSG 193 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~--~w~~~~~~------~~~r-~~~~ 193 (400)
..+..+|+.+++.............+++++. ++. +|+. .....+..||+... .-..+... .... .-.+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcE
Confidence 3688999987775432211111223455554 566 8888 34568999998755 22333211 0111 1223
Q ss_pred EEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCC-------CCccccc-EEEEe-C-CEEEEEcCccccCCCC
Q psy2979 194 IAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM-------KLAVTSP-AVVAH-E-GMLYVTGGAILEDGDG 261 (400)
Q Consensus 194 ~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l-------~~~~~~~-~~~~~-~-~~iyv~GG~~~~~~~~ 261 (400)
++.. ++.||+..+.. ...+.+||+....-..+... +...... +++.- + +.|||....
T Consensus 148 ia~~~~~g~lyv~d~~~----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~------- 216 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYC----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE------- 216 (329)
T ss_dssp EEECTTTCCEEEEECSS----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-------
T ss_pred EEEeCCCCeEEEEeCCC----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-------
Confidence 4443 57899987521 25688999655433333211 1112222 33332 4 899999765
Q ss_pred cceEEEEeCCCCceeec-cCCCCCceeeeEEEECCeEEEEcCcCCCC-CCCCeEEEEECCCCeEEEc-cCCcCccCcceE
Q psy2979 262 IEQVQRYNPKVNQWQDL-APMLIPRSGAAICALDSCIYVLGGWHAST-ENTNRVECYHIAENTWEYK-SPMKEKRYRPGI 338 (400)
Q Consensus 262 ~~~v~~yd~~~~~W~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~ 338 (400)
...+.+||+.+.+.... ..........+++...+.+|...|..... .....+..+|+.+++.... ...+.....+..
T Consensus 217 ~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ 296 (329)
T 3fvz_A 217 NGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHD 296 (329)
T ss_dssp TTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEE
T ss_pred CCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeE
Confidence 35899999986654432 21112222233444457777777743211 1145899999888875543 222222233334
Q ss_pred EEE--CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 339 AVI--DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 339 ~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
+++ +|.|||.... .+.|.+|++..
T Consensus 297 ia~~~dG~lyvad~~------~~~I~~~~~~~ 322 (329)
T 3fvz_A 297 IVASEDGTVYIGDAH------TNTVWKFTLTE 322 (329)
T ss_dssp EEECTTSEEEEEESS------SCCEEEEEEEE
T ss_pred EEECCCCCEEEEECC------CCEEEEEeCCc
Confidence 444 6799998754 34788888753
No 119
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=97.15 E-value=0.12 Score=46.38 Aligned_cols=225 Identities=12% Similarity=0.071 Sum_probs=105.1
Q ss_pred EEEEcCCCceEEccCCcc-cceeeeEEEECCeEEEEEe-ecCEEEEEECCCCC-eEEcc-------CCCCc-c----eee
Q psy2979 128 EGFCVKTKVWKTLSCLPF-AISKHGLVVSGRNTIYCLD-IVDIVYVAASMHKI-LHSLG-------SLKFD-F----DVS 192 (400)
Q Consensus 128 ~~yd~~~~~w~~~~~~~~-~~~~~~~~~~~~~~iyv~~-~~~~~~~yd~~~~~-w~~~~-------~~~~~-r----~~~ 192 (400)
+.++..+++...+...+. ....+.++. ++..+|+.. ....+..|+...+. ...+. .-+.+ | .-+
T Consensus 80 ~~~~~~~g~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 158 (361)
T 3scy_A 80 FAFDKEKGTLHLLNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLH 158 (361)
T ss_dssp EEEETTTTEEEEEEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEE
T ss_pred EEEeCCCCcEEEeeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcce
Confidence 444555566666554332 222233444 665366663 34578888876432 11111 00110 0 112
Q ss_pred eEEEE-CC-EEEEEcccCCCCCCCeEEEEeCCCCc-------eEEc-----cCCCCcccccEEE-EeCC-EEEEEcCccc
Q psy2979 193 GIAML-DG-FVYAVGGWDGSCRLDSVERYDPTKNE-------WSYI-----EPMKLAVTSPAVV-AHEG-MLYVTGGAIL 256 (400)
Q Consensus 193 ~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~-------W~~~-----~~l~~~~~~~~~~-~~~~-~iyv~GG~~~ 256 (400)
+++.. ++ .+|+.+.. ...+..|+..... .... ...+....-..++ .-++ .+|+.+..
T Consensus 159 ~~~~spdg~~l~~~~~~-----~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-- 231 (361)
T 3scy_A 159 CVRITPDGKYLLADDLG-----TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-- 231 (361)
T ss_dssp EEEECTTSSEEEEEETT-----TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT--
T ss_pred EEEECCCCCEEEEEeCC-----CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC--
Confidence 23332 44 57776432 2457777655433 2111 1111111111222 2345 57777643
Q ss_pred cCCCCcceEEEEeCCCCceeecc---CCCCCceeeeEEEE--CCe-EEEEcCcCCCCCCCCeEEEEE--CCCCeEEEccC
Q psy2979 257 EDGDGIEQVQRYNPKVNQWQDLA---PMLIPRSGAAICAL--DSC-IYVLGGWHASTENTNRVECYH--IAENTWEYKSP 328 (400)
Q Consensus 257 ~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~v~~yd--~~~~~W~~~~~ 328 (400)
.+.+..||..+.++..+. ..+........+.+ +++ ||+.+.. . .+.+..|+ +.+++++.+..
T Consensus 232 -----~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-~----~~~i~v~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 232 -----GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-K----ADGVAIFKVDETNGTLTKVGY 301 (361)
T ss_dssp -----TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-S----SCEEEEEEECTTTCCEEEEEE
T ss_pred -----CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-C----CCEEEEEEEcCCCCcEEEeeE
Confidence 247888888777665443 22222122222333 554 5554422 0 13455554 45778777665
Q ss_pred CcCccCcceEEEE--CCE-EEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 329 MKEKRYRPGIAVI--DGK-IYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 329 ~~~~~~~~~~~~~--~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
.+.. .......+ +|+ ||+.+.. + ..-.+|.+|+++++-+.+.
T Consensus 302 ~~~g-~~~~~~~~spdg~~l~~~~~~-~---~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 302 QLTG-IHPRNFIITPNGKYLLVACRD-T---NVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp EECS-SCCCEEEECTTSCEEEEEETT-T---TEEEEEEECTTTCCEEECS
T ss_pred ecCC-CCCceEEECCCCCEEEEEECC-C---CCEEEEEEECCCCcEeecc
Confidence 5542 22223334 454 6665533 1 1234555788888877764
No 120
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.12 E-value=0.14 Score=46.00 Aligned_cols=145 Identities=12% Similarity=0.116 Sum_probs=77.8
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEc-cCCCCcccccEEEE-e--CCEEEEEcCccccCCCCcceEEEEeCCCC
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI-EPMKLAVTSPAVVA-H--EGMLYVTGGAILEDGDGIEQVQRYNPKVN 273 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~l~~~~~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 273 (400)
++..++.|+.+ .++..||+.+++.... ..-.... .++.. . ++..++.|+. ++ .+..||..+.
T Consensus 165 ~~~~l~t~s~D-----~~v~lwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~g~~l~sgs~---Dg----~v~~wd~~~~ 230 (354)
T 2pbi_B 165 SDMQILTASGD-----GTCALWDVESGQLLQSFHGHGADV--LCLDLAPSETGNTFVSGGC---DK----KAMVWDMRSG 230 (354)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTCCEEEEEECCSSCE--EEEEECCCSSCCEEEEEET---TS----CEEEEETTTC
T ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEEEEcCCCCCe--EEEEEEeCCCCCEEEEEeC---CC----eEEEEECCCC
Confidence 34444455544 4688899888764322 1111111 11111 1 3567788887 54 6899998877
Q ss_pred ceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEc
Q psy2979 274 QWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLG 349 (400)
Q Consensus 274 ~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~G 349 (400)
+....-.... .....+.. ++..++.|+. ...+..||..+++-...-...........+.+ ++++.+.|
T Consensus 231 ~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~------D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g 302 (354)
T 2pbi_B 231 QCVQAFETHE--SDVNSVRYYPSGDAFASGSD------DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAG 302 (354)
T ss_dssp CEEEEECCCS--SCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred cEEEEecCCC--CCeEEEEEeCCCCEEEEEeC------CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEE
Confidence 6433211111 11122222 5677777776 45788999887754332221111122233333 57777777
Q ss_pred CccCCCCCCCeEEEEECCCCc
Q psy2979 350 GEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~~~~~ 370 (400)
+. + ..|.+||..+++
T Consensus 303 ~~-d-----~~i~vwd~~~~~ 317 (354)
T 2pbi_B 303 YN-D-----YTINVWDVLKGS 317 (354)
T ss_dssp ET-T-----SCEEEEETTTCS
T ss_pred EC-C-----CcEEEEECCCCc
Confidence 65 2 468899987654
No 121
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.034 Score=50.82 Aligned_cols=176 Identities=9% Similarity=-0.072 Sum_probs=84.7
Q ss_pred ceEEEEEcCCCceEEccCCcccc--------------eeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcce
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAI--------------SKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFD 190 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~--------------~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~ 190 (400)
..+..||..+++....-..+... ...+++...+..+++......+..||..+++-...-.. ....
T Consensus 171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~ 249 (425)
T 1r5m_A 171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIG-HHGP 249 (425)
T ss_dssp CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECC-CSSC
T ss_pred CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeecc-CCCc
Confidence 45778888776543322211111 02233333333154446667788999887542211110 1111
Q ss_pred eeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEE-ccCCCCcccccEEEEe-CCEEEEEcCccccCCCCcceEEE
Q psy2979 191 VSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSY-IEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQR 267 (400)
Q Consensus 191 ~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~ 267 (400)
-.+++.. ++..++.|+.+ ..+..||..+.+... +..... .-.+++.. ++ .++.|+. + ..+..
T Consensus 250 i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~l~~~~~---d----~~i~i 314 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDD-----GTLRIWHGGNGNSQNCFYGHSQ--SIVSASWVGDD-KVISCSM---D----GSVRL 314 (425)
T ss_dssp EEEEEEETTTTEEEEEETT-----SCEEEECSSSBSCSEEECCCSS--CEEEEEEETTT-EEEEEET---T----SEEEE
T ss_pred eEEEEECCCCCEEEEEcCC-----CEEEEEECCCCccceEecCCCc--cEEEEEECCCC-EEEEEeC---C----CcEEE
Confidence 1222222 55566666654 358888887654222 111111 11223333 45 6666666 4 37899
Q ss_pred EeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 268 YNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 268 yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
||..+.+-...-.............-++.+++.|+. ...+..||..+..
T Consensus 315 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM------DGQVNVYDLKKLN 363 (425)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEET------TSCEEEEECHHHH
T ss_pred EECCCCcEeEecccCCccEEEEEEcCCCCEEEEEEC------CCeEEEEECCCCc
Confidence 998766533221111111111112225677777765 4568888886554
No 122
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.08 E-value=0.087 Score=48.22 Aligned_cols=215 Identities=8% Similarity=0.006 Sum_probs=103.6
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEE-ECCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVV-SGRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFV 201 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~-~~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~i 201 (400)
..+..||..+.+.. ..+.........+. .++. .++. .....+..||..+++-...-. .....-.+++.. ++.+
T Consensus 78 ~~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~ 153 (420)
T 3vl1_A 78 GHDFLFNTIIRDGS--KMLKRADYTAVDTAKLQMR-RFILGTTEGDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEA 153 (420)
T ss_dssp TEEEEEECCSEETT--TTSCSCCEEEEEEECSSSC-EEEEEETTSCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSE
T ss_pred CcEEEEEeccccee--eEEecCCceEEEEEecCCC-EEEEEECCCCEEEEeCCCcceeeecc-cccCccEEEEECCCCCE
Confidence 46778887654321 11222211111122 2444 4443 555678888987665433211 111112222222 5566
Q ss_pred EEEcccCCCCCCCeEEEEeCCCCceE-EccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc
Q psy2979 202 YAVGGWDGSCRLDSVERYDPTKNEWS-YIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA 279 (400)
Q Consensus 202 yv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~ 279 (400)
++.|+.+ ..+..||..+.+-. .+..-..+ -.+++. -++..++.|+. ++ .+..||..+.+-...-
T Consensus 154 l~s~s~d-----~~i~iwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~---d~----~v~iwd~~~~~~~~~~ 219 (420)
T 3vl1_A 154 LISSSQD-----MQLKIWSVKDGSNPRTLIGHRAT--VTDIAIIDRGRNVLSASL---DG----TIRLWECGTGTTIHTF 219 (420)
T ss_dssp EEEEETT-----SEEEEEETTTCCCCEEEECCSSC--EEEEEEETTTTEEEEEET---TS----CEEEEETTTTEEEEEE
T ss_pred EEEEeCC-----CeEEEEeCCCCcCceEEcCCCCc--EEEEEEcCCCCEEEEEcC---CC----cEEEeECCCCceeEEe
Confidence 6667655 46888998766421 11111111 112222 25666677776 44 6888898766532221
Q ss_pred CC-C-CCceeeeEE----------------------EECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCc
Q psy2979 280 PM-L-IPRSGAAIC----------------------ALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYR 335 (400)
Q Consensus 280 ~~-~-~~r~~~~~~----------------------~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~ 335 (400)
.. . .......++ .-++..++.|+. ...+..||..+.+-...-.... ...
T Consensus 220 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~-~~~ 292 (420)
T 3vl1_A 220 NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV------SGVITVHNVFSKEQTIQLPSKF-TCS 292 (420)
T ss_dssp CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET------TSCEEEEETTTCCEEEEECCTT-SSC
T ss_pred ecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC------CCeEEEEECCCCceeEEccccc-CCC
Confidence 11 0 000011111 125667777765 4578999988765322211111 111
Q ss_pred ceEEEE--CCE-EEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 336 PGIAVI--DGK-IYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 336 ~~~~~~--~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
...+.+ ++. +++.|+. + ..|.+||..+.+
T Consensus 293 v~~~~~~~~~~~~l~~g~~-d-----g~i~vwd~~~~~ 324 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYAGYE-N-----GMLAQWDLRSPE 324 (420)
T ss_dssp EEEEEECSSCTTEEEEEET-T-----SEEEEEETTCTT
T ss_pred ceeEEEeCCCCCEEEEEeC-C-----CeEEEEEcCCCc
Confidence 222333 444 6677765 2 478999998753
No 123
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.05 E-value=0.085 Score=46.36 Aligned_cols=186 Identities=15% Similarity=0.106 Sum_probs=95.9
Q ss_pred EEEEeecCEEEEEECCCCCeE----EccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC
Q psy2979 160 IYCLDIVDIVYVAASMHKILH----SLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL 234 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~----~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~ 234 (400)
+++......+..||..++... .+........-.+++.. ++..++.|+.+ ..+..||..+++......+..
T Consensus 65 ~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~ 139 (337)
T 1gxr_A 65 HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-----STLSIWDLAAPTPRIKAELTS 139 (337)
T ss_dssp EEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-----SEEEEEECCCC--EEEEEEEC
T ss_pred EEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC-----CcEEEEECCCCCcceeeeccc
Confidence 333333567888888765421 11111111111222222 45566666654 468899998887544433322
Q ss_pred ccccc-EEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCC
Q psy2979 235 AVTSP-AVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTN 311 (400)
Q Consensus 235 ~~~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~ 311 (400)
..... +++. -++..+++|+. ++ .+..||..+.+....-..... ...++... ++..++.|+. ..
T Consensus 140 ~~~~i~~~~~~~~~~~l~~~~~---dg----~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~------dg 205 (337)
T 1gxr_A 140 SAPACYALAISPDSKVCFSCCS---DG----NIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGL------DN 205 (337)
T ss_dssp SSSCEEEEEECTTSSEEEEEET---TS----CEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEET------TS
T ss_pred CCCceEEEEECCCCCEEEEEeC---CC----cEEEEeCCCCceeeeeecccC-ceEEEEECCCCCEEEEEec------CC
Confidence 22222 2222 25667777776 43 689999887654332111111 11222222 6667777765 56
Q ss_pred eEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEE
Q psy2979 312 RVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 312 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
.+..||..+.+-...-..+.+ ...+.+ +++.+++|+. + ..+..||..+..-..
T Consensus 206 ~i~~~d~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~-~-----~~i~~~~~~~~~~~~ 260 (337)
T 1gxr_A 206 TVRSWDLREGRQLQQHDFTSQ---IFSLGYCPTGEWLAVGME-S-----SNVEVLHVNKPDKYQ 260 (337)
T ss_dssp EEEEEETTTTEEEEEEECSSC---EEEEEECTTSSEEEEEET-T-----SCEEEEETTSSCEEE
T ss_pred cEEEEECCCCceEeeecCCCc---eEEEEECCCCCEEEEEcC-C-----CcEEEEECCCCCeEE
Confidence 899999988764433222111 122223 5666777765 2 468899988775433
No 124
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.04 E-value=0.16 Score=45.22 Aligned_cols=142 Identities=11% Similarity=0.051 Sum_probs=75.1
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCC-CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLK-FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVT 237 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~ 237 (400)
++.......+..+|..+++... .+. ....-.+++.. ++.+++.|+.+ ..+..||..+++-...-.-....
T Consensus 157 l~s~s~d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~sg~~d-----~~v~~wd~~~~~~~~~~~~h~~~- 228 (340)
T 1got_B 157 IVTSSGDTTCALWDIETGQQTT--TFTGHTGDVMSLSLAPDTRLFVSGACD-----ASAKLWDVREGMCRQTFTGHESD- 228 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCSEEEEECCCSSC-
T ss_pred EEEEECCCcEEEEECCCCcEEE--EEcCCCCceEEEEECCCCCEEEEEeCC-----CcEEEEECCCCeeEEEEcCCcCC-
Confidence 4444555678888987765332 111 11111122222 56677777765 35888998876533211111111
Q ss_pred ccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEE
Q psy2979 238 SPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVE 314 (400)
Q Consensus 238 ~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 314 (400)
-.+++. -++..++.|+. ++ .+..||..+.+-...-..+........+.. ++.+++.|+. ...+.
T Consensus 229 v~~v~~~p~~~~l~s~s~---d~----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------d~~i~ 295 (340)
T 1got_B 229 INAICFFPNGNAFATGSD---DA----TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD------DFNCN 295 (340)
T ss_dssp EEEEEECTTSSEEEEEET---TS----CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSEEE
T ss_pred EEEEEEcCCCCEEEEEcC---CC----cEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC------CCeEE
Confidence 111222 26778888887 54 688899877653221111111111222222 6778888776 46799
Q ss_pred EEECCCCe
Q psy2979 315 CYHIAENT 322 (400)
Q Consensus 315 ~yd~~~~~ 322 (400)
.||..+.+
T Consensus 296 vwd~~~~~ 303 (340)
T 1got_B 296 VWDALKAD 303 (340)
T ss_dssp EEETTTCC
T ss_pred EEEcccCc
Confidence 99987654
No 125
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.096 Score=46.49 Aligned_cols=235 Identities=14% Similarity=0.197 Sum_probs=110.9
Q ss_pred EEEEeccCCCcccceEEEEEcCCCceEEccCCc---ccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCC-----CeEE
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLP---FAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHK-----ILHS 181 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~---~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~-----~w~~ 181 (400)
+++.|+.+ ..+..||...+.+..+..+. ....-.+++.. ++. +++. .....+..+|.... .+..
T Consensus 26 ~las~~~D-----~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~iw~~~~~~~~~~~~~~ 99 (330)
T 2hes_X 26 ILATGSTD-----RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMDL 99 (330)
T ss_dssp EEEEEESS-----SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS-EEEEEETTSCEEEEEC-------CCCEE
T ss_pred EEEEEcCC-----CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC-EEEEEeCCCcEEEEEcccCcCcccccee
Confidence 55566654 46778887765443322221 11122233333 333 3333 44456777776432 1222
Q ss_pred ccCCCCcc-eeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCC--CceEEccCCCCcccccEEEE--eCCEEEEEcCcc
Q psy2979 182 LGSLKFDF-DVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTK--NEWSYIEPMKLAVTSPAVVA--HEGMLYVTGGAI 255 (400)
Q Consensus 182 ~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~l~~~~~~~~~~~--~~~~iyv~GG~~ 255 (400)
+..+.... .-.+++.. +++.++.|+.+ ..+..||... ..+..+..+......-..+. -++.+++.|+.
T Consensus 100 ~~~~~~h~~~V~~v~~sp~g~~las~s~D-----~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~- 173 (330)
T 2hes_X 100 LAIIEGHENEVKGVAWSNDGYYLATCSRD-----KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY- 173 (330)
T ss_dssp EEEEC----CEEEEEECTTSCEEEEEETT-----SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET-
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEEEeCC-----CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC-
Confidence 22221111 11112221 56667777765 3578888743 23443332222111112222 25677788877
Q ss_pred ccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--C--CeEEEEcCcCCCCCCCCeEEEEECCC------CeEEE
Q psy2979 256 LEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--D--SCIYVLGGWHASTENTNRVECYHIAE------NTWEY 325 (400)
Q Consensus 256 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~v~~yd~~~------~~W~~ 325 (400)
++ .+..||..+..|..+..+.........+.. + +..++.|+. ...+..||..+ ..|..
T Consensus 174 --D~----~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------D~~v~iw~~~~~~~~~~~~~~~ 241 (330)
T 2hes_X 174 --DD----TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD------DSTVRVWKYMGDDEDDQQEWVC 241 (330)
T ss_dssp --TS----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET------TSCEEEEEEEEECTTSCEEEEE
T ss_pred --CC----eEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC------CCeEEEEEecCCCccccceeEE
Confidence 54 578888777777665443322111112222 2 345666665 23455555432 24555
Q ss_pred ccCCcCccC-cceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecC
Q psy2979 326 KSPMKEKRY-RPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 326 ~~~~~~~~~-~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 376 (400)
...++.... ....+.. .+.+++.||. + ..|.+||..++.|+.+..
T Consensus 242 ~~~~~~~h~~~v~~v~~s~~~~l~s~~~-d-----g~v~iw~~~~~~~~~~~~ 288 (330)
T 2hes_X 242 EAILPDVHKRQVYNVAWGFNGLIASVGA-D-----GVLAVYEEVDGEWKVFAK 288 (330)
T ss_dssp EEECCSCCSSCEEEEEECTTSCEEEEET-T-----SCEEEEEEETTEEEEEEE
T ss_pred eeecccccccceEEEEEcCCCEEEEEeC-C-----CEEEEEEcCCCceEEEec
Confidence 444432111 1112222 3445566665 2 367889988888876643
No 126
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.03 E-value=0.16 Score=46.40 Aligned_cols=142 Identities=11% Similarity=0.039 Sum_probs=72.5
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCCCcceeee-EEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSG-IAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS 238 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~ 238 (400)
++.......+..||..+.+. ...+........ ....++..++.|+.+ ..+..||..+++-...-.-.. ..-
T Consensus 71 l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~h~-~~v 142 (420)
T 3vl1_A 71 LYKARLDGHDFLFNTIIRDG--SKMLKRADYTAVDTAKLQMRRFILGTTE-----GDIKVLDSNFNLQREIDQAHV-SEI 142 (420)
T ss_dssp EEEEEETTEEEEEECCSEET--TTTSCSCCEEEEEEECSSSCEEEEEETT-----SCEEEECTTSCEEEEETTSSS-SCE
T ss_pred EEEEEcCCcEEEEEecccce--eeEEecCCceEEEEEecCCCEEEEEECC-----CCEEEEeCCCcceeeeccccc-Ccc
Confidence 44444445677777654332 122222211111 112266777777765 358889988775443311111 111
Q ss_pred cEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCcee-eccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEE
Q psy2979 239 PAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ-DLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 239 ~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 315 (400)
.+++. -++.+++.|+. ++ .+..||..+.+-. .+..- ...-.+++.. ++..++.|+. ...+..
T Consensus 143 ~~~~~~~~~~~l~s~s~---d~----~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~------d~~v~i 207 (420)
T 3vl1_A 143 TKLKFFPSGEALISSSQ---DM----QLKIWSVKDGSNPRTLIGH--RATVTDIAIIDRGRNVLSASL------DGTIRL 207 (420)
T ss_dssp EEEEECTTSSEEEEEET---TS----EEEEEETTTCCCCEEEECC--SSCEEEEEEETTTTEEEEEET------TSCEEE
T ss_pred EEEEECCCCCEEEEEeC---CC----eEEEEeCCCCcCceEEcCC--CCcEEEEEEcCCCCEEEEEcC------CCcEEE
Confidence 12222 25667777776 43 7899998765421 11111 1111222222 5666777765 457889
Q ss_pred EECCCCeEE
Q psy2979 316 YHIAENTWE 324 (400)
Q Consensus 316 yd~~~~~W~ 324 (400)
||..+++-.
T Consensus 208 wd~~~~~~~ 216 (420)
T 3vl1_A 208 WECGTGTTI 216 (420)
T ss_dssp EETTTTEEE
T ss_pred eECCCCcee
Confidence 998877643
No 127
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=97.03 E-value=0.06 Score=47.72 Aligned_cols=198 Identities=13% Similarity=0.104 Sum_probs=104.1
Q ss_pred CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEc-cCC
Q psy2979 156 GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI-EPM 232 (400)
Q Consensus 156 ~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~l 232 (400)
++. +|+. .....++.||+.+++........ ...-.+++.- ++++|+.+... ......+.+||+.+++...+ ...
T Consensus 55 ~g~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~ 131 (333)
T 2dg1_A 55 QGQ-LFLLDVFEGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGD-FKSTGGIFAATENGDNLQDIIEDL 131 (333)
T ss_dssp TSC-EEEEETTTCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTT-SSSCCEEEEECTTSCSCEEEECSS
T ss_pred CCC-EEEEECCCCEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCC-CCCCceEEEEeCCCCEEEEEEccC
Confidence 455 8876 34567999999988876653211 1122233332 66788865322 11124689999998876532 222
Q ss_pred CCcccccEEEE-eCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccC-CCCCceeeeEEEE-CC-eEEEEcCcCCCC
Q psy2979 233 KLAVTSPAVVA-HEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAP-MLIPRSGAAICAL-DS-CIYVLGGWHAST 307 (400)
Q Consensus 233 ~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~~-~~-~iyv~GG~~~~~ 307 (400)
.....-..++. -++.+|+..... .... ...++++|+.+.+...+.. ... ..+++.. ++ .+|+....
T Consensus 132 ~~~~~~~~i~~d~~g~l~v~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~i~~~~dg~~l~v~~~~---- 202 (333)
T 2dg1_A 132 STAYCIDDMVFDSKGGFYFTDFRG--YSTNPLGGVYYVSPDFRTVTPIIQNISV---ANGIALSTDEKVLWVTETT---- 202 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEECCC--BTTBCCEEEEEECTTSCCEEEEEEEESS---EEEEEECTTSSEEEEEEGG----
T ss_pred ccCCcccceEECCCCCEEEEeccc--cccCCCceEEEEeCCCCEEEEeecCCCc---ccceEECCCCCEEEEEeCC----
Confidence 21111112222 367888865420 0011 3579999998776655421 111 1223222 44 47777533
Q ss_pred CCCCeEEEEECCC--CeEEEcc-----CCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 308 ENTNRVECYHIAE--NTWEYKS-----PMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 308 ~~~~~v~~yd~~~--~~W~~~~-----~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
...+++||+.+ .....+. ..+. ........+ +|++|+.... ...|.+||+....-..+
T Consensus 203 --~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~------~~~v~~~d~~g~~~~~~ 269 (333)
T 2dg1_A 203 --ANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYG------QGRVLVFNKRGYPIGQI 269 (333)
T ss_dssp --GTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEET------TTEEEEECTTSCEEEEE
T ss_pred --CCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcC------CCEEEEECCCCCEEEEE
Confidence 45799999854 2332211 1111 112222333 5788887532 24689999965544443
No 128
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.022 Score=57.29 Aligned_cols=236 Identities=13% Similarity=0.083 Sum_probs=120.2
Q ss_pred EEEEeccCCCcccceEEEEEcCCCceEEccCCcccce-eeeEEEE-C--CeEEEEEeecCEEEEEECCCCCeEEccCCCC
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAIS-KHGLVVS-G--RNTIYCLDIVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~-~~~~~~~-~--~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
.++.|+.+ ..+.+||...+.+..+..+..... -.+++.. + +..++.......+..+|..+++|.....+..
T Consensus 23 ~latg~~d-----g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~ 97 (753)
T 3jro_A 23 RLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV 97 (753)
T ss_dssp CEEEEETT-----TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred eEEEEECC-----CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccC
Confidence 45556554 467888877666655443332222 2233332 2 3413333555678888988887766555432
Q ss_pred cceeeeEEEE--C--CEEEEEcccCCCCCCCeEEEEeCCCCceEE---ccCCCCcccccEEEEe--------------CC
Q psy2979 188 DFDVSGIAML--D--GFVYAVGGWDGSCRLDSVERYDPTKNEWSY---IEPMKLAVTSPAVVAH--------------EG 246 (400)
Q Consensus 188 ~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~---~~~l~~~~~~~~~~~~--------------~~ 246 (400)
.......+.. + +.+++.|+.+ ..+..||..++.-.. ....+... .+++.. ++
T Consensus 98 h~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~vwdl~~~~~~~~~~~~~~~~~v--~~l~~~p~~~~~~~~~~~~~d~ 170 (753)
T 3jro_A 98 HSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKENGTTSPIIIDAHAIGV--NSASWAPATIEEDGEHNGTKES 170 (753)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCSSSCCCCEEEECCSSCE--EEEEECCCC---------CGGG
T ss_pred CCCCeEEEEECCCCCCCEEEEEeCC-----CcEEEEEeecCCCcceeEeecCCCce--EEEEecCcccccccccccCCCC
Confidence 2222222222 3 6677777755 357888887662111 11111111 111111 35
Q ss_pred EEEEEcCccccCCCCcceEEEEeCCCC--ceeeccCCCCCceeeeEEEE--C---CeEEEEcCcCCCCCCCCeEEEEECC
Q psy2979 247 MLYVTGGAILEDGDGIEQVQRYNPKVN--QWQDLAPMLIPRSGAAICAL--D---SCIYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 247 ~iyv~GG~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~r~~~~~~~~--~---~~iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
..+++|+. ++ .+..||..+. .+.....+.........+.. + +.+++.||. ...+..||..
T Consensus 171 ~~l~sgs~---dg----~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~------Dg~I~iwd~~ 237 (753)
T 3jro_A 171 RKFVTGGA---DN----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ------DRTCIIWTQD 237 (753)
T ss_dssp CCEEEEET---TS----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES------SSCEEEEEES
T ss_pred CEEEEEEC---CC----eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec------CCEEEEecCC
Confidence 67777776 54 5777776544 34444333221122222222 4 678888876 4568888877
Q ss_pred CCe--EEE-ccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCC-CcEEEecCCC
Q psy2979 320 ENT--WEY-KSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDN-DSWEIMSHLP 378 (400)
Q Consensus 320 ~~~--W~~-~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~~~~ 378 (400)
+.. +.. +............+.. +++.++.||. + ..|.+||..+ +.|.....+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-D-----g~I~vwd~~~~~~~~~~~~~~ 296 (753)
T 3jro_A 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-D-----NKVTLWKENLEGKWEPAGEVH 296 (753)
T ss_dssp SSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS-S-----SCEECCBCCSSSCCBCCCCBC
T ss_pred CCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC-C-----CEEEEEecCCCCCcccccccc
Confidence 653 111 1111111111122222 6777777776 2 3578888874 5677665443
No 129
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.02 E-value=0.15 Score=44.58 Aligned_cols=175 Identities=11% Similarity=0.117 Sum_probs=89.3
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE--E
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV--A 243 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~--~ 243 (400)
..+..+|..+++....-.- ....-.+++.. ++..++.|+.+ ..+..||..+++-... +......-..+ .
T Consensus 45 g~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~ 116 (312)
T 4ery_A 45 KLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSASDD-----KTLKIWDVSSGKCLKT--LKGHSNYVFCCNFN 116 (312)
T ss_dssp SCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEEC
T ss_pred CeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEECCC-----CEEEEEECCCCcEEEE--EcCCCCCEEEEEEc
Confidence 4566677766655432111 11111122222 55667777755 4688899887753221 11111111111 2
Q ss_pred eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 244 HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
-++..++.|+. ++ .+..||..+.+-... ++........+.. ++.+++.|+. ...+..||..++
T Consensus 117 ~~~~~l~s~~~---d~----~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~ 181 (312)
T 4ery_A 117 PQSNLIVSGSF---DE----SVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSY------DGLCRIWDTASG 181 (312)
T ss_dssp SSSSEEEEEET---TS----CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTC
T ss_pred CCCCEEEEEeC---CC----cEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeC------CCcEEEEECCCC
Confidence 25667777777 44 688999876653221 1111111122222 6677777776 457889999877
Q ss_pred eEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 322 TWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 322 ~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
+....-.... ......+.+ +++.++.|+. + ..|.+||..+.+-
T Consensus 182 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-d-----~~i~iwd~~~~~~ 226 (312)
T 4ery_A 182 QCLKTLIDDD-NPPVSFVKFSPNGKYILAATL-D-----NTLKLWDYSKGKC 226 (312)
T ss_dssp CEEEEECCSS-CCCEEEEEECTTSSEEEEEET-T-----TEEEEEETTTTEE
T ss_pred ceeeEEeccC-CCceEEEEECCCCCEEEEEcC-C-----CeEEEEECCCCcE
Confidence 6433211111 111122233 5666666665 2 4788999887653
No 130
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.99 E-value=0.17 Score=50.70 Aligned_cols=208 Identities=14% Similarity=0.163 Sum_probs=111.2
Q ss_pred eEEEEEcCCCceEEccCCcc-----cceeeeEEEE-CCeEEEEEeecCEEEEEECCC------CCeE---E---ccCCCC
Q psy2979 126 SVEGFCVKTKVWKTLSCLPF-----AISKHGLVVS-GRNTIYCLDIVDIVYVAASMH------KILH---S---LGSLKF 187 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~~-----~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~------~~w~---~---~~~~~~ 187 (400)
-+..||+.++++..+..... ...-.++..- ++. |++.....-+++||+.+ ..+. . ...++.
T Consensus 393 GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 471 (758)
T 3ott_A 393 SINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSG 471 (758)
T ss_dssp EEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSC
T ss_pred cHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceeccccccccccccc
Confidence 46788988888776531110 1111233332 345 77765556788888753 1221 1 111221
Q ss_pred cceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC--CCCcccccEEEE-eCCEEEEEcCccccCCCCcc
Q psy2979 188 DFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP--MKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIE 263 (400)
Q Consensus 188 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~--l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 263 (400)
. .-.++..- ++.|+++||.. .-+.+||+.+++++.... ++....-.++.. -+|.|++.. . .
T Consensus 472 ~-~i~~i~~d~~g~lWi~~~t~-----~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~--------~ 536 (758)
T 3ott_A 472 M-FINQIIPDNEGNVWVLLYNN-----KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-H--------G 536 (758)
T ss_dssp S-CEEEEEECTTSCEEEEETTC-----SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-T--------T
T ss_pred c-eeeeEEEcCCCCEEEEccCC-----CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-c--------C
Confidence 1 11122222 57899866653 248999999999887642 211111112222 367888643 2 2
Q ss_pred eEEEEeCCCCceeecc--CCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE
Q psy2979 264 QVQRYNPKVNQWQDLA--PMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI 341 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 341 (400)
.+.+|||.+++++... .+|.. ...++..-+|.|++.. .+-+.+|||.+.+..... ++..... .++..
T Consensus 537 Gl~~~~~~~~~~~~~~~~gl~~~-~i~~i~~~~g~lWi~t--------~~Gl~~~~~~~~~~~~~~-~~~~~~~-~~~~~ 605 (758)
T 3ott_A 537 GVMRINPKDESQQSISFGSFSNN-EILSMTCVKNSIWVST--------TNGLWIIDRKTMDARQQN-MTNKRFT-SLLFD 605 (758)
T ss_dssp EEEEECC--CCCCBCCCCC---C-CEEEEEEETTEEEEEE--------SSCEEEEETTTCCEEEC---CCCCCS-EEEEE
T ss_pred ceEEEecCCCceEEecccCCCcc-ceEEEEECCCCEEEEC--------CCCeEEEcCCCceeEEec-CCCCcee-eeEEE
Confidence 6899999988877653 33322 2233444588898876 346899999998877643 3322222 22222
Q ss_pred --CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 342 --DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 342 --~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
+|.||+ ||. +.+..|||+.
T Consensus 606 ~~~G~l~f-G~~-------~Gl~~f~p~~ 626 (758)
T 3ott_A 606 PKEDCVYL-GGA-------DGFGISHSNL 626 (758)
T ss_dssp TTTTEEEE-ECB-------SEEEEEEC--
T ss_pred CCCCcEEE-ecC-------CceEEEChhh
Confidence 677776 444 3567888864
No 131
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=96.99 E-value=2.3e-05 Score=67.94 Aligned_cols=79 Identities=14% Similarity=0.348 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHhcCceeceE-------EEECCeEEehhhHHHhhcCcccc------------ccceeecCCCCHHHHHHH
Q psy2979 2 KMVLTGFNEARKNNEFCDVT-------LCVDGSKFPAHRVVLAASSPYFK------------VLETIRLPQLSPYFLHDC 62 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~-------l~~~~~~~~~hr~vLaa~s~yf~------------~m~~vrl~~l~~~~l~~~ 62 (400)
++|..+|.++.+++.|.++. |..|+..++.+..|+.|+..|.+ +|++|||+.|++++|.+.
T Consensus 157 ~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~~~~R~~~~~~ll~~VRf~~l~~~~l~~~ 236 (256)
T 3hve_A 157 EYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIRKVHMKDVMSALWVSGLDSSYLREQ 236 (256)
T ss_dssp HHHHHHHHHHTTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC--CCSTTTHHHHHHHHHHHTTCC-CHHHH
T ss_pred HHHHHHHHHHhCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 46788999999999998884 56677777888888888887763 678999999999999999
Q ss_pred hhhcccccCc-hhHHHHHH
Q psy2979 63 VEQCAIIKNN-PQCAQLVE 80 (400)
Q Consensus 63 i~~~~l~~~~-~~c~~~l~ 80 (400)
+++++++... +.|++++.
T Consensus 237 v~~~~l~~~~~~~c~~ll~ 255 (256)
T 3hve_A 237 MLNEPLVREIVKECSNIPL 255 (256)
T ss_dssp HHTSTTHHHHHCC------
T ss_pred HhcChHHHhhHHHHHHHhh
Confidence 9999999988 78998875
No 132
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.99 E-value=0.19 Score=45.19 Aligned_cols=210 Identities=11% Similarity=0.064 Sum_probs=120.2
Q ss_pred eEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCCCCeEEccC--CCCcceeeeEEE--EC
Q psy2979 126 SVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMHKILHSLGS--LKFDFDVSGIAM--LD 198 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~--~~~~r~~~~~~~--~~ 198 (400)
.+..+++.......+.. ......+++.. ++. ||+. .....++.+++.....+.+.. +..| .++++ .+
T Consensus 54 ~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p---~glavd~~~ 127 (349)
T 3v64_C 54 DIRQVLPHRSEYTLLLN--NLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEEVVSTGLESP---GGLAVDWVH 127 (349)
T ss_dssp CEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCC---CEEEEETTT
T ss_pred ceEEEeCCCCeeEEeec--CCCceEEEEEeccccE-EEEEeccCCceEEEecCCCCceEEEeCCCCCc---cEEEEecCC
Confidence 46677777666654432 12223455543 455 8888 445689999998776554432 2222 23333 37
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEcc--CCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE--PMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
+.||+.-.. ...++++++....-..+. .+..++ ++++- ++.||+..-. . ...++++++....
T Consensus 128 g~ly~~d~~-----~~~I~~~~~dG~~~~~l~~~~l~~P~---~iavdp~~g~ly~td~~---~---~~~I~r~~~dG~~ 193 (349)
T 3v64_C 128 DKLYWTDSG-----TSRIEVANLDGAHRKVLLWQSLEKPR---AIALHPMEGTIYWTDWG---N---TPRIEASSMDGSG 193 (349)
T ss_dssp TEEEEEETT-----TTEEEEEETTSCSCEEEECTTCSCEE---EEEEETTTTEEEEEECS---S---SCEEEEEETTSCS
T ss_pred CeEEEEcCC-----CCeEEEEcCCCCceEEEEeCCCCCcc---eEEEecCcCeEEEeccC---C---CCEEEEEeCCCCC
Confidence 899987432 357889988765433332 222222 33443 7899998543 1 2579999987655
Q ss_pred eeeccCCCCCceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCcc
Q psy2979 275 WQDLAPMLIPRSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEE 352 (400)
Q Consensus 275 W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~ 352 (400)
-+.+..-... .-.+++. .++.||+.... ...++++|+....-..+.... ...-.++++.++.||+.-..
T Consensus 194 ~~~~~~~~~~-~PnGla~d~~~~~lY~aD~~------~~~I~~~~~dG~~~~~~~~~~-~~~P~giav~~~~ly~td~~- 264 (349)
T 3v64_C 194 RRIIADTHLF-WPNGLTIDYAGRRMYWVDAK------HHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDWH- 264 (349)
T ss_dssp CEESCCSSCS-CEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECSS-CSSEEEEEEETTEEEEEETT-
T ss_pred cEEEEECCCC-CcceEEEeCCCCEEEEEECC------CCEEEEEeCCCCceEEEEeCC-CCCceEEEEECCEEEEecCC-
Confidence 4444221111 1123333 37899998754 568999998754322222111 11234566679999998643
Q ss_pred CCCCCCCeEEEEECCCC
Q psy2979 353 GWDGYHDSIECYDVDND 369 (400)
Q Consensus 353 ~~~~~~~~v~~yd~~~~ 369 (400)
...|.++|..++
T Consensus 265 -----~~~V~~~~~~~G 276 (349)
T 3v64_C 265 -----TKSINSANKFTG 276 (349)
T ss_dssp -----TTEEEEEETTTC
T ss_pred -----CCeEEEEEccCC
Confidence 356778875444
No 133
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.98 E-value=0.1 Score=47.57 Aligned_cols=216 Identities=15% Similarity=0.038 Sum_probs=106.4
Q ss_pred EEEE-eecCEEEEEECCCCCeEE-----ccCCC-CcceeeeEEEE-CC-EEEEEcccCCCCCCCeEEEEeCCCCceEEcc
Q psy2979 160 IYCL-DIVDIVYVAASMHKILHS-----LGSLK-FDFDVSGIAML-DG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIE 230 (400)
Q Consensus 160 iyv~-~~~~~~~~yd~~~~~w~~-----~~~~~-~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 230 (400)
+++. .....+..+|..++.... +..+. ....-.+++.. ++ .+++.|+.+ ..+..||..+++....-
T Consensus 96 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~ 170 (402)
T 2aq5_A 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD-----NVILVWDVGTGAAVLTL 170 (402)
T ss_dssp EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT-----SCEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC-----CEEEEEECCCCCccEEE
Confidence 4444 555678889988764321 11111 11111122222 33 477777765 35889999887654322
Q ss_pred C-CCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEEECCeEEEEcCcCCC
Q psy2979 231 P-MKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICALDSCIYVLGGWHAS 306 (400)
Q Consensus 231 ~-l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~~~~iyv~GG~~~~ 306 (400)
. ......-.+++. -++..++.|+. ++ .+..||+.+.+-...- .-...+....+..-++.+++.|.....
T Consensus 171 ~~~~~~~~v~~~~~~~~~~~l~~~~~---d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~ 243 (402)
T 2aq5_A 171 GPDVHPDTIYSVDWSRDGALICTSCR---DK----RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS 243 (402)
T ss_dssp CTTTCCSCEEEEEECTTSSCEEEEET---TS----EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTC
T ss_pred ecCCCCCceEEEEECCCCCEEEEEec---CC----cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCC
Confidence 1 011111112222 26777777776 43 7999999876543221 111111122222336777777621111
Q ss_pred CCCCCeEEEEECCCCeE-EEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc--EEEecCCCCCC
Q psy2979 307 TENTNRVECYHIAENTW-EYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEIMSHLPSAR 381 (400)
Q Consensus 307 ~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r 381 (400)
...+..||..+..- .....+........++.. +..+++.|+. + ..|.+||..+++ ...+.......
T Consensus 244 ---d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~-d-----g~i~i~d~~~~~~~~~~l~~~~~~~ 314 (402)
T 2aq5_A 244 ---ERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG-D-----SSIRYFEITSEAPFLHYLSMFSSKE 314 (402)
T ss_dssp ---CEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT-C-----SCEEEEEECSSTTCEEEEEEECCSS
T ss_pred ---CceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC-C-----CeEEEEEecCCCcceEeecccccCC
Confidence 46899999876431 011111111111122222 3456667754 2 368889988876 55555444333
Q ss_pred CceeeEEEccccccc
Q psy2979 382 SWLGCVPLQIHKSQF 396 (400)
Q Consensus 382 ~~~~~~~~~~~~~~~ 396 (400)
.-.+++...+..++.
T Consensus 315 ~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 315 SQRGMGYMPKRGLEV 329 (402)
T ss_dssp CCSEEEECCGGGSCG
T ss_pred cccceEEecccccce
Confidence 344555555555443
No 134
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.97 E-value=0.12 Score=47.59 Aligned_cols=221 Identities=9% Similarity=0.080 Sum_probs=106.3
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCc
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFD 188 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~ 188 (400)
.+++.|+.+ ..+.++|..+++....-... ...-.+++.. ++. +++. .....+..+|..+.+- +..+...
T Consensus 121 ~~l~s~s~D-----g~i~vwd~~~~~~~~~l~~h-~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~~--~~~~~~h 191 (410)
T 1vyh_C 121 SVMVSASED-----ATIKVWDYETGDFERTLKGH-TDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFEC--IRTMHGH 191 (410)
T ss_dssp SEEEEEESS-----SCEEEEETTTCCCCEEECCC-SSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSCE--EECCCCC
T ss_pred CEEEEEeCC-----CeEEEEECCCCcEEEEEecc-CCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce--eEEEcCC
Confidence 345555544 46788888776533211101 1111233333 333 3333 4445677788765442 2222211
Q ss_pred c-eeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE--EeCCEEEEEcCccccCCCCcce
Q psy2979 189 F-DVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV--AHEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 189 r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~ 264 (400)
. .-.+++.. ++..++.|+.+ ..+..||..+++.... +.........+ .-++.+++.|+. ++ .
T Consensus 192 ~~~V~~v~~~p~~~~l~s~s~D-----~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~s~---D~----~ 257 (410)
T 1vyh_C 192 DHNVSSVSIMPNGDHIVSASRD-----KTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTLIASCSN---DQ----T 257 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEEEET---TS----C
T ss_pred CCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCEEEEEcC---CC----e
Confidence 1 11122222 45666667755 4688899888754321 11111111111 236777788877 54 6
Q ss_pred EEEEeCCCCceeeccCCCCCceeeeEEE----------------------ECCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 265 VQRYNPKVNQWQDLAPMLIPRSGAAICA----------------------LDSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 265 v~~yd~~~~~W~~~~~~~~~r~~~~~~~----------------------~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
+..||..+...... +.........+. ..+.+++.|+. ...+..||..+++
T Consensus 258 v~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~------D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 258 VRVWVVATKECKAE--LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR------DKTIKMWDVSTGM 329 (410)
T ss_dssp EEEEETTTCCEEEE--ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET------TSEEEEEETTTTE
T ss_pred EEEEECCCCceeeE--ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC------CCeEEEEECCCCc
Confidence 78888776653321 100000001111 12556677765 4679999988775
Q ss_pred EEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 323 WEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 323 W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
-... +.........+.+ +++.++.||. + ..|.+||..+.+
T Consensus 330 ~~~~--~~~h~~~v~~v~~~~~g~~l~s~s~-D-----~~i~vwd~~~~~ 371 (410)
T 1vyh_C 330 CLMT--LVGHDNWVRGVLFHSGGKFILSCAD-D-----KTLRVWDYKNKR 371 (410)
T ss_dssp EEEE--EECCSSCEEEEEECSSSSCEEEEET-T-----TEEEEECCTTSC
T ss_pred eEEE--EECCCCcEEEEEEcCCCCEEEEEeC-C-----CeEEEEECCCCc
Confidence 3221 1111111122233 5666667765 2 468888886653
No 135
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.97 E-value=0.3 Score=47.18 Aligned_cols=117 Identities=12% Similarity=0.126 Sum_probs=70.9
Q ss_pred EEEECCeEEEEEee-cCEEEEEEC-CCCC--eEEccCCCCc--------ceeeeEEEECCEEEEEcccCCCCCCCeEEEE
Q psy2979 152 LVVSGRNTIYCLDI-VDIVYVAAS-MHKI--LHSLGSLKFD--------FDVSGIAMLDGFVYAVGGWDGSCRLDSVERY 219 (400)
Q Consensus 152 ~~~~~~~~iyv~~~-~~~~~~yd~-~~~~--w~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 219 (400)
-++.++. +|+... ...++.+|. .+++ |+.-...... ....+.+..+++||+... ...+..+
T Consensus 58 P~v~~g~-vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l~al 130 (571)
T 2ad6_A 58 PLVIGDM-MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------NGHLLAL 130 (571)
T ss_dssp CEEETTE-EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEEEEE
T ss_pred cEEECCE-EEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------CCEEEEE
Confidence 3556888 999866 678999999 7765 8764432211 112235567899998643 2468999
Q ss_pred eCCCC--ceEEccCCC-Cc-ccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCc--eeec
Q psy2979 220 DPTKN--EWSYIEPMK-LA-VTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQ--WQDL 278 (400)
Q Consensus 220 d~~~~--~W~~~~~l~-~~-~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~--W~~~ 278 (400)
|..++ .|+.-..-+ .. ....+-++.++.+|+..+. .... ...++.||+.+.+ |+.-
T Consensus 131 D~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~---~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 131 DAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSG---AELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp ETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBC---GGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecC---CccCCCCEEEEEECCCCcEEEEEc
Confidence 99887 487532211 11 1122334568998876432 1000 2478999998665 8654
No 136
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.094 Score=45.57 Aligned_cols=186 Identities=9% Similarity=0.066 Sum_probs=87.5
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP 239 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~ 239 (400)
++.......+..+|....... +.....+-........++..++.|+.+ ..+..||..... .............
T Consensus 117 l~~~~~d~~i~~~d~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~-~~~~~~~~~~i~~ 189 (313)
T 3odt_A 117 VISGSWDKTAKVWKEGSLVYN-LQAHNASVWDAKVVSFSENKFLTASAD-----KTIKLWQNDKVI-KTFSGIHNDVVRH 189 (313)
T ss_dssp EEEEETTSEEEEEETTEEEEE-EECCSSCEEEEEEEETTTTEEEEEETT-----SCEEEEETTEEE-EEECSSCSSCEEE
T ss_pred EEEEeCCCCEEEEcCCcEEEe-cccCCCceeEEEEccCCCCEEEEEECC-----CCEEEEecCceE-EEEeccCcccEEE
Confidence 444455667788882221111 111111111111112156666666655 347788833221 1222111111222
Q ss_pred EEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 240 AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 240 ~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
....-++. ++.|+. + ..+..||..+.+-...-... ...-.+++.. ++. ++.|+. ...+..||.
T Consensus 190 ~~~~~~~~-~~~~~~---d----g~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~-l~~~~~------dg~v~iwd~ 253 (313)
T 3odt_A 190 LAVVDDGH-FISCSN---D----GLIKLVDMHTGDVLRTYEGH-ESFVYCIKLLPNGD-IVSCGE------DRTVRIWSK 253 (313)
T ss_dssp EEEEETTE-EEEEET---T----SEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSC-EEEEET------TSEEEEECT
T ss_pred EEEcCCCe-EEEccC---C----CeEEEEECCchhhhhhhhcC-CceEEEEEEecCCC-EEEEec------CCEEEEEEC
Confidence 22334667 666666 4 37899998765422211111 1111222233 444 555554 568999999
Q ss_pred CCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCC
Q psy2979 319 AENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHL 377 (400)
Q Consensus 319 ~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 377 (400)
.+.+....-..+.. ....+.. +++ ++.|+. + ..|.+||..++++.....+
T Consensus 254 ~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~-d-----g~i~iw~~~~~~~~~~~~~ 305 (313)
T 3odt_A 254 ENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSS-D-----NLVRIFSQEKSRWASEDEI 305 (313)
T ss_dssp TTCCEEEEEECSSS--CEEEEEECTTSC-EEEEET-T-----SCEEEEESCGGGCCC----
T ss_pred CCCceeEEEeccCc--eEEEEEEccCCC-EEEEeC-C-----CcEEEEeCCCCceeehhhh
Confidence 88865443222211 1122222 566 455665 2 4689999998877655443
No 137
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=96.94 E-value=0.17 Score=43.90 Aligned_cols=211 Identities=9% Similarity=-0.003 Sum_probs=113.9
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee-cCEEEEEECCCCCeEEccCCCCc-c--eeeeEEE-EC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI-VDIVYVAASMHKILHSLGSLKFD-F--DVSGIAM-LD 198 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~-~~~~~~yd~~~~~w~~~~~~~~~-r--~~~~~~~-~~ 198 (400)
..+..||+.++ ...+.. +. ....+++.. ++. +|+... ...+..||+.+++...+...... . .-..++. -+
T Consensus 50 ~~i~~~~~~~~-~~~~~~-~~-~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~ 125 (296)
T 3e5z_A 50 NRTWAWSDDGQ-LSPEMH-PS-HHQNGHCLNKQGH-LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPD 125 (296)
T ss_dssp TEEEEEETTSC-EEEEES-SC-SSEEEEEECTTCC-EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTT
T ss_pred CEEEEEECCCC-eEEEEC-CC-CCcceeeECCCCc-EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCC
Confidence 47889999887 554432 21 122344443 556 887744 46899999988887765432111 1 1112222 26
Q ss_pred CEEEEE----cccC--------CCCCCCeEEEEeCCCCceEEccC-CCCcccccEEEE-eCCEEEEEcCccccCCCCcce
Q psy2979 199 GFVYAV----GGWD--------GSCRLDSVERYDPTKNEWSYIEP-MKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 199 ~~iyv~----GG~~--------~~~~~~~v~~yd~~~~~W~~~~~-l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 264 (400)
+.+|+. |... .......++++|+. ++...+.. +..+ .+++. -++++++.+.. ...
T Consensus 126 G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~---~gi~~s~dg~~lv~~~~-------~~~ 194 (296)
T 3e5z_A 126 GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP---NGLAFLPSGNLLVSDTG-------DNA 194 (296)
T ss_dssp SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE---EEEEECTTSCEEEEETT-------TTE
T ss_pred CCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC---ccEEECCCCCEEEEeCC-------CCe
Confidence 788886 4311 01123479999988 55554432 2111 12332 35666655443 347
Q ss_pred EEEEeCC-CCce-e--eccCCCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEE
Q psy2979 265 VQRYNPK-VNQW-Q--DLAPMLIPRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIA 339 (400)
Q Consensus 265 v~~yd~~-~~~W-~--~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 339 (400)
+++||.. +.+. . .+-..... .-.+++. -+|.||+..+ ..+.+||+.......+. .+.. ...+
T Consensus 195 i~~~~~~~~g~~~~~~~~~~~~~~-~p~~i~~d~~G~l~v~~~--------~~v~~~~~~g~~~~~~~-~~~~---~~~~ 261 (296)
T 3e5z_A 195 THRYCLNARGETEYQGVHFTVEPG-KTDGLRVDAGGLIWASAG--------DGVHVLTPDGDELGRVL-TPQT---TSNL 261 (296)
T ss_dssp EEEEEECSSSCEEEEEEEECCSSS-CCCSEEEBTTSCEEEEET--------TEEEEECTTSCEEEEEE-CSSC---CCEE
T ss_pred EEEEEECCCCcCcCCCeEeeCCCC-CCCeEEECCCCCEEEEcC--------CeEEEECCCCCEEEEEE-CCCC---ceeE
Confidence 8999875 3444 1 11111111 1112333 3778988772 47999999865544443 2222 3334
Q ss_pred EE---C-CEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 340 VI---D-GKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 340 ~~---~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
++ + +.||+... +.+++|++++++-
T Consensus 262 ~f~~~d~~~L~v~t~--------~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 262 CFGGPEGRTLYMTVS--------TEFWSIETNVRGL 289 (296)
T ss_dssp EEESTTSCEEEEEET--------TEEEEEECSCCBC
T ss_pred EEECCCCCEEEEEcC--------CeEEEEEcccccc
Confidence 44 2 35777653 3689999988754
No 138
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.93 E-value=0.021 Score=51.58 Aligned_cols=238 Identities=12% Similarity=-0.008 Sum_probs=109.7
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcccc-eeeeEEEE-CCeEEEEEeecCEEEEEECCCCC-eEEccCCCC
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAI-SKHGLVVS-GRNTIYCLDIVDIVYVAASMHKI-LHSLGSLKF 187 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~-~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~-w~~~~~~~~ 187 (400)
..++.|+.+ ..+..||..++.|..+..+.... .-.+++.. ++..|+.......+..+|..++. |.....+..
T Consensus 24 ~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~ 98 (377)
T 3dwl_C 24 TEFVTTTAT-----NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLR 98 (377)
T ss_dssp SEEECCCSS-----SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCC
T ss_pred CEEEEecCC-----CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecc
Confidence 355566544 46778888888777665554322 22334443 33313333445678888888776 443332221
Q ss_pred c-ceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCc-eEEccCCCCccc-c-cEEEE-eCCEEEEEcCccccCCCC
Q psy2979 188 D-FDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNE-WSYIEPMKLAVT-S-PAVVA-HEGMLYVTGGAILEDGDG 261 (400)
Q Consensus 188 ~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~l~~~~~-~-~~~~~-~~~~iyv~GG~~~~~~~~ 261 (400)
. ..-.+++.. ++..++.|+.+ ..+..||..+++ |.....+..+.. . .+++. -++++++.|+. ++
T Consensus 99 ~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---d~-- 168 (377)
T 3dwl_C 99 LNRAATFVRWSPNEDKFAVGSGA-----RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA---DR-- 168 (377)
T ss_dssp CSSCEEEEECCTTSSCCEEEESS-----SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES---SS--
T ss_pred cCCceEEEEECCCCCEEEEEecC-----CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC---CC--
Confidence 1 111122211 45666667654 357888887764 332322222111 1 12222 25677777777 54
Q ss_pred cceEEEEeCCCCcee----------------eccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeE-
Q psy2979 262 IEQVQRYNPKVNQWQ----------------DLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTW- 323 (400)
Q Consensus 262 ~~~v~~yd~~~~~W~----------------~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W- 323 (400)
.+..||..+.... .+..+.....-.+++.. ++++++.|+. ...+..||..+.+-
T Consensus 169 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~~i~iwd~~~~~~~ 240 (377)
T 3dwl_C 169 --KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH------DSSVTIAYPSAPEQP 240 (377)
T ss_dssp --CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET------TTEEC-CEECSTTSC
T ss_pred --EEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC------CCcEEEEECCCCCCc
Confidence 5788887543321 11122111111122222 6676777765 45777888776542
Q ss_pred -EEccCCcCccCcceEE--EECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCC
Q psy2979 324 -EYKSPMKEKRYRPGIA--VIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP 378 (400)
Q Consensus 324 -~~~~~~~~~~~~~~~~--~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 378 (400)
..+..+.........+ .-++++++.|+. +.+.+|+.....|+....+.
T Consensus 241 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~ 291 (377)
T 3dwl_C 241 PRALITVKLSQLPLRSLLWANESAIVAAGYN-------YSPILLQGNESGWAHTRDLD 291 (377)
T ss_dssp EEECCCEECSSSCEEEEEEEETTEEEEEESS-------SSEEEECCCC---CCSBCCC
T ss_pred ceeeEeecCCCCceEEEEEcCCCCEEEEEcC-------CcEEEEEeCCCceEEEeeec
Confidence 1122222211111222 237887777754 34568888877787776554
No 139
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.037 Score=55.60 Aligned_cols=179 Identities=15% Similarity=0.121 Sum_probs=94.7
Q ss_pred CEEEEEECCCCCeEEccCCCCccee-eeEEEE-C--CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDV-SGIAML-D--GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV 242 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~-~~~~~~-~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~ 242 (400)
..+..||...+++.....+...... .+++.. + +..++.|+.+ ..+..||..+++|..+..+.........+
T Consensus 31 g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~~h~~~V~~v 105 (753)
T 3jro_A 31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEENGRWSQIAVHAVHSASVNSV 105 (753)
T ss_dssp TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC-----CeEEEEECCCCcccccccccCCCCCeEEE
Confidence 4566666665556555444322222 222222 2 5677777765 35888999998877665444322222333
Q ss_pred Ee--C--CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC-CCceeeeEEEE--------------CCeEEEEcCc
Q psy2979 243 AH--E--GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML-IPRSGAAICAL--------------DSCIYVLGGW 303 (400)
Q Consensus 243 ~~--~--~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--------------~~~iyv~GG~ 303 (400)
.. + +.++++|+. ++ .+..||..+..-.....+. .+....++... ++..++.|+.
T Consensus 106 ~~sp~~~~~~l~sgs~---dg----~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~ 178 (753)
T 3jro_A 106 QWAPHEYGPLLLVASS---DG----KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178 (753)
T ss_dssp EECCGGGCSEEEEEET---TS----EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEET
T ss_pred EECCCCCCCEEEEEeC---CC----cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEEC
Confidence 32 3 677788877 44 7888988765221111000 11111111111 3567777766
Q ss_pred CCCCCCCCeEEEEECCCC--eEEEccCCcCccCcceEEEE--C---CEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 304 HASTENTNRVECYHIAEN--TWEYKSPMKEKRYRPGIAVI--D---GKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 304 ~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~--~---~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
...+..||..++ .+.....+.........+.+ + +++++.||. + ..|.+||+.++
T Consensus 179 ------dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~-D-----g~I~iwd~~~~ 239 (753)
T 3jro_A 179 ------DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-D-----RTCIIWTQDNE 239 (753)
T ss_dssp ------TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES-S-----SCEEEEEESSS
T ss_pred ------CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec-C-----CEEEEecCCCC
Confidence 345777776544 44444333322222233333 4 788888886 3 35788888775
No 140
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.26 Score=45.75 Aligned_cols=240 Identities=11% Similarity=0.037 Sum_probs=117.6
Q ss_pred cEEEEEeccCCCcccceEEEEEcC--CCceEE-ccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEE--cc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVK--TKVWKT-LSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHS--LG 183 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~--~~~w~~-~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~--~~ 183 (400)
..+++.|+.+ ..+.+||.. +++... +.....+..-.+++.. ++..|++......++.++..+..... ..
T Consensus 115 ~~l~~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~ 189 (450)
T 2vdu_B 115 SRLIACADSD-----KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQE 189 (450)
T ss_dssp SEEEEEEGGG-----TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCC
T ss_pred CEEEEEECCC-----CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccce
Confidence 4555667654 467888877 544322 1110111111233333 33314443555678888876654321 11
Q ss_pred CCCC-cceeeeE-EEEC---CEEEEEcccCCCCCCCeEEEEeCCCCceEEc--cCCCCcccccEEEEeCCEEEEEcCccc
Q psy2979 184 SLKF-DFDVSGI-AMLD---GFVYAVGGWDGSCRLDSVERYDPTKNEWSYI--EPMKLAVTSPAVVAHEGMLYVTGGAIL 256 (400)
Q Consensus 184 ~~~~-~r~~~~~-~~~~---~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~--~~l~~~~~~~~~~~~~~~iyv~GG~~~ 256 (400)
.+.. ...-.++ ..-+ +.+++.|+.+ ..+..||..+++.... ........ ..+.. ++..++.|+.
T Consensus 190 ~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~h~~~v~-~~~~s-d~~~l~s~~~-- 260 (450)
T 2vdu_B 190 PILGHVSMLTDVHLIKDSDGHQFIITSDRD-----EHIKISHYPQCFIVDKWLFGHKHFVS-SICCG-KDYLLLSAGG-- 260 (450)
T ss_dssp CSEECSSCEEEEEEEECTTSCEEEEEEETT-----SCEEEEEESCTTCEEEECCCCSSCEE-EEEEC-STTEEEEEES--
T ss_pred eeecccCceEEEEEcCCCCCCcEEEEEcCC-----CcEEEEECCCCceeeeeecCCCCceE-EEEEC-CCCEEEEEeC--
Confidence 1111 1111122 2235 7777778765 4588888877654322 11111111 11222 7777778876
Q ss_pred cCCCCcceEEEEeCCCCceeeccCC------------------------CCCceeeeEEEE-CCeEEEEcC-cCCCCCCC
Q psy2979 257 EDGDGIEQVQRYNPKVNQWQDLAPM------------------------LIPRSGAAICAL-DSCIYVLGG-WHASTENT 310 (400)
Q Consensus 257 ~~~~~~~~v~~yd~~~~~W~~~~~~------------------------~~~r~~~~~~~~-~~~iyv~GG-~~~~~~~~ 310 (400)
++ .+..||..+.+....-.. ........++.. ++..+++++ . .
T Consensus 261 -d~----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~------d 329 (450)
T 2vdu_B 261 -DD----KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA------T 329 (450)
T ss_dssp -SS----EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT------C
T ss_pred -CC----eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC------C
Confidence 43 789999887663222110 001111122222 344444443 3 4
Q ss_pred CeEEEEEC--C-CCeEEEccCCcCccCcceEEEECCEEEEEcCccCCC---CCCCeEEEEECCCCcEEEe
Q psy2979 311 NRVECYHI--A-ENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWD---GYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 311 ~~v~~yd~--~-~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~---~~~~~v~~yd~~~~~W~~~ 374 (400)
..+..||. . .+++..+..++.......++...+.+++..+..... ...-.++.++.++++|+..
T Consensus 330 ~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~ 399 (450)
T 2vdu_B 330 KCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVN 399 (450)
T ss_dssp SEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEEEC
T ss_pred CeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEEEc
Confidence 57888887 3 345555554443322233444467777766541111 1223777888888888643
No 141
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.90 E-value=0.25 Score=45.33 Aligned_cols=212 Identities=12% Similarity=0.080 Sum_probs=118.9
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCCC----CeEEccCCCCcceeeeEEE-
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMHK----ILHSLGSLKFDFDVSGIAM- 196 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~~----~w~~~~~~~~~r~~~~~~~- 196 (400)
..+...++....+..+. +......+++.. ++. ||+. .....++.+++... ....+..-. ...-.++++
T Consensus 92 ~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~~p~glavD 167 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVD 167 (400)
T ss_dssp TEEEEECTTSCSCEEEE--CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSS-CSCEEEEEEE
T ss_pred ceeEEEccCCcceeEec--cccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCC-CCCcccEEEE
Confidence 46777787777666543 222333455554 466 9988 34567888888652 222222111 111223333
Q ss_pred -ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEcc--CCCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCC
Q psy2979 197 -LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE--PMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPK 271 (400)
Q Consensus 197 -~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~ 271 (400)
.++.||+.-.. ...++++++....-..+. .+..++ ++++ .++.||+.--. . ...++++++.
T Consensus 168 ~~~~~lY~~d~~-----~~~I~~~~~~g~~~~~l~~~~~~~P~---~iavdp~~g~ly~td~~---~---~~~I~~~~~d 233 (400)
T 3p5b_L 168 WIHSNIYWTDSV-----LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWG---T---PAKIKKGGLN 233 (400)
T ss_dssp TTTTEEEEEETT-----TTEEEEECTTTCSEEEEEECSSCCEE---EEEEETTTTEEEEEECS---S---SCCEEEEETT
T ss_pred ecCCceEEEECC-----CCeEEEEeCCCCceEEEEeCCCCCcc---eEEEecccCeEEEEeCC---C---CCEEEEEeCC
Confidence 37899998432 357889998876554442 222222 3444 37899998521 1 2468999887
Q ss_pred CCceeecc--CCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc-CccCcceEEEECCEEE
Q psy2979 272 VNQWQDLA--PMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK-EKRYRPGIAVIDGKIY 346 (400)
Q Consensus 272 ~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~ly 346 (400)
...-+.+. .+..| .+++.- ++.||+.... ...|+++|+....-..+...+ ......++++.++.||
T Consensus 234 G~~~~~~~~~~l~~P---~glavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~ly 304 (400)
T 3p5b_L 234 GVDIYSLVTENIQWP---NGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF 304 (400)
T ss_dssp SCSCEEEECSSCSCE---EEEEEETTTTEEEEEETT------TTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEE
T ss_pred CCccEEEEECCCCce---EEEEEEeCCCEEEEEECC------CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEE
Confidence 65433332 22222 233333 7899999754 578999998765433332211 1123346777899999
Q ss_pred EEcCccCCCCCCCeEEEEECCCC
Q psy2979 347 VLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 347 v~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
+.--. ...|+++|..++
T Consensus 305 wtd~~------~~~V~~~~~~~G 321 (400)
T 3p5b_L 305 WTDII------NEAIFSANRLTG 321 (400)
T ss_dssp EEESS------SCSEEEEESSSC
T ss_pred EecCC------CCeEEEEEcCCC
Confidence 98632 245777775443
No 142
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=96.90 E-value=0.052 Score=47.90 Aligned_cols=239 Identities=14% Similarity=0.146 Sum_probs=114.3
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCccc-ceeeeEEEEC---CeEEEEEeecCEEEEEECCCCCeEEccCCC
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFA-ISKHGLVVSG---RNTIYCLDIVDIVYVAASMHKILHSLGSLK 186 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~-~~~~~~~~~~---~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~ 186 (400)
..++.|+.+ ..+.++|..+++...+..+... ..-.+++... +..|.....-..+..+|..+++|.....+.
T Consensus 26 ~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~ 100 (316)
T 3bg1_A 26 TRLATCSSD-----RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA 100 (316)
T ss_dssp CEEEEEETT-----TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEEC
T ss_pred CEEEEEeCC-----CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEcc
Confidence 455666655 4677888776543222222211 1112233321 331333355567888898877665443322
Q ss_pred Ccce-eeeEEEE-C--CEEEEEcccCCCCCCCeEEEEeCCCC-ceEEccCCCCcccccEEEEe-----------------
Q psy2979 187 FDFD-VSGIAML-D--GFVYAVGGWDGSCRLDSVERYDPTKN-EWSYIEPMKLAVTSPAVVAH----------------- 244 (400)
Q Consensus 187 ~~r~-~~~~~~~-~--~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~l~~~~~~~~~~~~----------------- 244 (400)
.... -.+++.. + +.+++.|+.++ .+..||..++ .|.....+.........+..
T Consensus 101 ~h~~~V~~v~~~p~~~g~~lasgs~D~-----~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~ 175 (316)
T 3bg1_A 101 GHDSSVNSVCWAPHDYGLILACGSSDG-----AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQK 175 (316)
T ss_dssp CCSSCCCEEEECCTTTCSCEEEECSSS-----CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCC
T ss_pred CCCCceEEEEECCCCCCcEEEEEcCCC-----CEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccC
Confidence 1111 1122222 2 45667777553 4677777665 46443222111000000000
Q ss_pred --CCEEEEEcCccccCCCCcceEEEEeCCC-CceeeccCCCCCceeeeEEEE--C----CeEEEEcCcCCCCCCCCeEEE
Q psy2979 245 --EGMLYVTGGAILEDGDGIEQVQRYNPKV-NQWQDLAPMLIPRSGAAICAL--D----SCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 245 --~~~iyv~GG~~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~r~~~~~~~~--~----~~iyv~GG~~~~~~~~~~v~~ 315 (400)
.++.++.||. |+ .+..||..+ ..|..+..+.........+.. + +.+++.|+. ..++..
T Consensus 176 ~~~~~~l~sgs~---D~----~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~------D~~v~i 242 (316)
T 3bg1_A 176 PNYIKRFASGGC---DN----LIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ------DGRVFI 242 (316)
T ss_dssp CCCCCBEECCBT---TS----BCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET------TCEEEE
T ss_pred ccccceEEEecC---CC----eEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC------CCeEEE
Confidence 1356677776 54 566677653 457665544322221222222 2 256777765 457888
Q ss_pred EECCC---CeEEE--ccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECC-CCcEEEecCCCCCC
Q psy2979 316 YHIAE---NTWEY--KSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVD-NDSWEIMSHLPSAR 381 (400)
Q Consensus 316 yd~~~---~~W~~--~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~r 381 (400)
+|..+ +.|.. +... ......+.. ++++++.||. + ..|.+|+.. .+.|..+..+..+-
T Consensus 243 w~~~~~~~~~~~~~~~~~~---~~~v~~v~~sp~g~~las~~~-D-----~~v~lw~~~~~g~~~~~~~~~~~~ 307 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLHKF---NDVVWHVSWSITANILAVSGG-D-----NKVTLWKESVDGQWVCISDVNKGQ 307 (316)
T ss_dssp EECSSTTCCCCBCCEEEEC---SSCEEEEEECTTTCCEEEEES-S-----SCEEEEEECTTSCEEEEEECC---
T ss_pred EEccCccccchhhhhhhcC---CCcEEEEEEcCCCCEEEEEcC-C-----CeEEEEEECCCCcEEEeeeccCCC
Confidence 88765 23321 1111 011112223 5777777776 3 356777764 56899888777654
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.89 E-value=0.21 Score=49.37 Aligned_cols=191 Identities=10% Similarity=-0.017 Sum_probs=99.7
Q ss_pred CEEEEEECCCCCeEEccCCCCccee-eeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCC-ceEEccCCCCcc----ccc
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDV-SGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKN-EWSYIEPMKLAV----TSP 239 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~l~~~~----~~~ 239 (400)
..++.+|..+++-..+......... ..++. -+++..+++..+.......+..+|+.++ .+..+..-.... ...
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP 314 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence 5688899888775554432111112 22222 2555444444443334457899999988 665553211111 011
Q ss_pred EEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECC-eEEEEcCcCCCCCCCCeEEEE
Q psy2979 240 AVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDS-CIYVLGGWHASTENTNRVECY 316 (400)
Q Consensus 240 ~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~y 316 (400)
....- ++++++.+.. ++ ...++.+|........+..-...........-++ .||+.+..+.. . ...++.+
T Consensus 315 ~~~sp~~dg~~l~~~~~---~g--~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~-~-~~~l~~~ 387 (706)
T 2z3z_A 315 LTFLPGSNNQFIWQSRR---DG--WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASP-L-ERHFYCI 387 (706)
T ss_dssp CEECTTCSSEEEEEECT---TS--SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCT-T-CBEEEEE
T ss_pred ceeecCCCCEEEEEEcc---CC--ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCC-c-eEEEEEE
Confidence 22333 7776666654 43 3578899977776776643222221111112244 56666544221 1 3589999
Q ss_pred ECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 317 HIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 317 d~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
|..+++...+.... ..+ .+.+ +++.+++... + ......++.+|..+++
T Consensus 388 d~~~~~~~~l~~~~---~~~-~~~~spdg~~l~~~~~-~-~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 388 DIKGGKTKDLTPES---GMH-RTQLSPDGSAIIDIFQ-S-PTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ETTCCCCEESCCSS---SEE-EEEECTTSSEEEEEEE-C-SSCSCEEEEEESSSCE
T ss_pred EcCCCCceeccCCC---ceE-EEEECCCCCEEEEEec-C-CCCCcEEEEEECCCCe
Confidence 99888766665211 112 2233 5665555533 2 1223578999988876
No 144
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.88 E-value=0.27 Score=45.31 Aligned_cols=199 Identities=13% Similarity=0.086 Sum_probs=109.7
Q ss_pred eeEEEE-CCeEEEEEee-cCEEEEEECCCCCeEEccCCC-CcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc-
Q psy2979 150 HGLVVS-GRNTIYCLDI-VDIVYVAASMHKILHSLGSLK-FDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE- 225 (400)
Q Consensus 150 ~~~~~~-~~~~iyv~~~-~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~- 225 (400)
+++++. ++. ||+... ...+..+|+.++.-..+.... .++ .+...-++.+|+...... ..++.+|+.++.
T Consensus 134 ~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~--ia~~~~g~~l~~~d~~~~----~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 134 WGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK--PAVTKDKQRVYSIGWEGT----HTVYVYMKASGWA 206 (409)
T ss_dssp EEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEEETCCBCB--CEECTTSSEEEEEBSSTT----CEEEEEEGGGTTC
T ss_pred eEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEeeccCCCCc--eeEecCCCcEEEEecCCC----ceEEEEEcCCCce
Confidence 445554 556 998843 468999999987765544321 111 111112446777644221 278999987653
Q ss_pred eEEccCCC--CcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC---CCCCcee-e-eEEEE--C
Q psy2979 226 WSYIEPMK--LAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP---MLIPRSG-A-AICAL--D 294 (400)
Q Consensus 226 W~~~~~l~--~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~r~~-~-~~~~~--~ 294 (400)
...+..++ ....-++++.. ++.||+.... ..+++||+.+.....+.. ....... . .++.. +
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~--------~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSN--------KNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD 278 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTT--------CEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECC--------CcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC
Confidence 22331111 11122233332 6899995332 379999998776555421 1111112 1 44444 5
Q ss_pred CeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCC-c----------CccCcceEEEE--CCEEEEEcC-ccCCCCCCCe
Q psy2979 295 SCIYVLGGWHASTENTNRVECYHIAENTWEYKSPM-K----------EKRYRPGIAVI--DGKIYVLGG-EEGWDGYHDS 360 (400)
Q Consensus 295 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-~----------~~~~~~~~~~~--~~~lyv~GG-~~~~~~~~~~ 360 (400)
+.||+.... ...+++|++....-...... . .....+...++ +|+||+... . ...
T Consensus 279 g~lyv~d~~------~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~------~~~ 346 (409)
T 3hrp_A 279 SNFYMSDQN------LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK------GYC 346 (409)
T ss_dssp TEEEEEETT------TTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT------TCE
T ss_pred CEEEEEeCC------CCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC------CCE
Confidence 899998754 56899999876532222221 0 00122334444 578999864 3 357
Q ss_pred EEEEECCCCcEEEec
Q psy2979 361 IECYDVDNDSWEIMS 375 (400)
Q Consensus 361 v~~yd~~~~~W~~~~ 375 (400)
|.++|+.++....+.
T Consensus 347 I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 347 LRKLDILDGYVSTVA 361 (409)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEECCCCEEEEEe
Confidence 999997777666553
No 145
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.84 E-value=0.48 Score=47.60 Aligned_cols=208 Identities=13% Similarity=0.098 Sum_probs=113.5
Q ss_pred EEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCCC----CeEEccC--CCCcceeeeEEE-
Q psy2979 127 VEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMHK----ILHSLGS--LKFDFDVSGIAM- 196 (400)
Q Consensus 127 ~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~~----~w~~~~~--~~~~r~~~~~~~- 196 (400)
+..++.....+..+.. ......++++. ++. ||+. ...+.++.+++... ....+.. +..| .++++
T Consensus 406 Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P---~GLAvD 479 (791)
T 3m0c_C 406 VRKMTLDRSEYTSLIP--NLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVD 479 (791)
T ss_dssp EEEECTTSCCCEEEEC--SCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCSCC---CEEEEE
T ss_pred eeEeeccCCcceeeec--CCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc---ceeeee
Confidence 4445555444444321 12223445543 456 8888 33457888887642 2222221 2122 22333
Q ss_pred -ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEcc--CCCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCC
Q psy2979 197 -LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE--PMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPK 271 (400)
Q Consensus 197 -~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~ 271 (400)
.++.||+.-. ....|+++++....-..+. .+..++ ++++ .++.||+.--. . ...|+++++.
T Consensus 480 ~~~~~LY~tD~-----~~~~I~v~~ldG~~~~~l~~~~l~~P~---gIaVDp~~g~LYwtD~g---~---~~~I~~~~~d 545 (791)
T 3m0c_C 480 WIHSNIYWTDS-----VLGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWG---T---PAKIKKGGLN 545 (791)
T ss_dssp TTTTEEEEEET-----TTTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECS---S---SCEEEEEETT
T ss_pred ecCCcEEEEec-----CCCeEEEEeCCCCeEEEEEeCCCCCcc---eEEEecCCCCEEEecCC---C---CCeEEEEecC
Confidence 3679999743 2357999998876554442 233222 3444 36899998521 1 2479999987
Q ss_pred CCceeecc--CCCCCceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCC-cCccCcceEEEECCEEE
Q psy2979 272 VNQWQDLA--PMLIPRSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPM-KEKRYRPGIAVIDGKIY 346 (400)
Q Consensus 272 ~~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~~~ly 346 (400)
...-..+. .+..| .++++ .++.||+.... ...|+++++....-..+... ..-....++++.+++||
T Consensus 546 G~~~~~lv~~~l~~P---~GLavD~~~~~LYwaD~~------~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lY 616 (791)
T 3m0c_C 546 GVDIYSLVTENIQWP---NGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF 616 (791)
T ss_dssp SCCEEEEECSSCSCE---EEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEE
T ss_pred CCceEEEEeCCCCCc---eEEEEecCCCeEEEEeCC------CCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEE
Confidence 65544432 22222 23333 37899999754 57899999875543333221 11123346677899999
Q ss_pred EEcCccCCCCCCCeEEEEECCCC
Q psy2979 347 VLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 347 v~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
+.-.. ...|+++|..++
T Consensus 617 wtD~~------~~~I~~~dk~tG 633 (791)
T 3m0c_C 617 WTDII------NEAIFSANRLTG 633 (791)
T ss_dssp EEETT------TTEEEEEETTTC
T ss_pred EEECC------CCEEEEEeCCCC
Confidence 98643 356777775444
No 146
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=96.84 E-value=0.15 Score=41.88 Aligned_cols=145 Identities=14% Similarity=0.152 Sum_probs=83.8
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEE--c----cCCCCcccccEEEEe--CCEEEEEcCccccCCCCcce
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSY--I----EPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~--~----~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 264 (400)
+++..++.+|++=| ..+++++.....+.. + +.||.. .. ++... ++++|++-|. .
T Consensus 28 Ai~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~wp~Lp~~-iD-Aa~~~~~~~~iyfFkG~---------~ 89 (207)
T 1pex_A 28 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPNR-ID-AAYEHPSHDLIFIFRGR---------K 89 (207)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCSS-CC-EEEEETTTTEEEEEETT---------E
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCcCCCceehhHhccCCCCC-cc-EEEEeccCCcEEEEccC---------E
Confidence 45557999999976 457777765443321 1 345532 22 23322 6999999887 7
Q ss_pred EEEEeCCCCce---eeccCCCCCc---eeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC------Cc
Q psy2979 265 VQRYNPKVNQW---QDLAPMLIPR---SGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP------MK 330 (400)
Q Consensus 265 v~~yd~~~~~W---~~~~~~~~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~------~~ 330 (400)
+|+|+..+..- ..+..+..|. .--++... ++++|++-|. ..|+||..+++-..--+ .+
T Consensus 90 ~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG~--------~ywr~d~~~~~~d~gyPr~i~~~~~ 161 (207)
T 1pex_A 90 FWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN--------QVWRYDDTNHIMDKDYPRLIEEDFP 161 (207)
T ss_dssp EEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT--------EEEEEETTTTEECSSCCCBHHHHST
T ss_pred EEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeCC--------EEEEEeCcCccccCCCCccHHHcCC
Confidence 89997532211 1222221221 12223332 4899999874 79999987754221000 11
Q ss_pred -CccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 331 -EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 331 -~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
.+..--++...+|++|++-|. ..|+||+.+++=
T Consensus 162 Gip~~iDaAf~~~g~~YfFkg~--------~y~rf~~~~~~v 195 (207)
T 1pex_A 162 GIGDKVDAVYEKNGYIYFFNGP--------IQFEYSIWSNRI 195 (207)
T ss_dssp TSCSCCSEEEEETTEEEEEETT--------EEEEEETTTTEE
T ss_pred CCCCCccEEEEcCCcEEEEECC--------EEEEEeCCccEE
Confidence 112223344569999999885 689999987653
No 147
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.81 E-value=0.24 Score=43.69 Aligned_cols=227 Identities=11% Similarity=0.116 Sum_probs=107.2
Q ss_pred EEEEeccCCCcccceEEEEEcCCCc----eEEccCCcccceeeeEEEE-CCe-EEEEEeecCEEEEEEC-CCCCeEEccC
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKV----WKTLSCLPFAISKHGLVVS-GRN-TIYCLDIVDIVYVAAS-MHKILHSLGS 184 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~----w~~~~~~~~~~~~~~~~~~-~~~-~iyv~~~~~~~~~yd~-~~~~w~~~~~ 184 (400)
.++.|+.+ ..+.+||..+++ ...+. .....-.+++.. ++. .+++......+..||. .+++...+..
T Consensus 25 ~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 97 (342)
T 1yfq_A 25 LLLITSWD-----GSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN 97 (342)
T ss_dssp EEEEEETT-----SEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBS
T ss_pred EEEEEcCC-----CeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccc
Confidence 44555543 467778776655 22222 111122333433 222 2555566678899998 8777655544
Q ss_pred CCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc-------eEEccCCCCcccccEEEEeCCEEEEEcCcccc
Q psy2979 185 LKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE-------WSYIEPMKLAVTSPAVVAHEGMLYVTGGAILE 257 (400)
Q Consensus 185 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-------W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~ 257 (400)
......-.+++...+..++.|+.+ ..+..||+.+.. .+.+..+.....-.+++...+. +++|+.
T Consensus 98 ~~~~~~v~~l~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~--- 168 (342)
T 1yfq_A 98 NEANLGICRICKYGDDKLIAASWD-----GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMN--- 168 (342)
T ss_dssp CCCCSCEEEEEEETTTEEEEEETT-----SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-EEEEES---
T ss_pred cCCCCceEEEEeCCCCEEEEEcCC-----CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-EEEEeC---
Confidence 111111222222224555556654 457778766400 1122223322222233444555 555555
Q ss_pred CCCCcceEEEEeCCC-Cc--eeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCC--------eEE
Q psy2979 258 DGDGIEQVQRYNPKV-NQ--WQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAEN--------TWE 324 (400)
Q Consensus 258 ~~~~~~~v~~yd~~~-~~--W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~--------~W~ 324 (400)
+ ..+..||..+ .. ..... .+......++... ++..++.|+. ...+..||.... ...
T Consensus 169 d----~~i~i~d~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~------dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 169 N----SQVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSI------DGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp T----TEEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEET------TSEEEEEECCTTCCSTTCTTCEE
T ss_pred C----CeEEEEECCccccccceeee-cCCCCceeEEEECCCCCCEEEEEec------CCcEEEEEEcCCCccccccccee
Confidence 3 3799999877 32 22111 1111112222333 4677777765 335555554332 222
Q ss_pred EccCCc--C--c-cCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 325 YKSPMK--E--K-RYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 325 ~~~~~~--~--~-~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
.-.... . . ......+.+ ++++++.|+. + ..|.+||..+.+-
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d-----g~i~vwd~~~~~~ 285 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-D-----GIISCWNLQTRKK 285 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-T-----SCEEEEETTTTEE
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecC-C-----ceEEEEcCccHhH
Confidence 111110 0 0 011223333 5676677765 2 3689999987653
No 148
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.80 E-value=0.12 Score=46.75 Aligned_cols=185 Identities=11% Similarity=0.037 Sum_probs=95.3
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCC-cccceeeeEEEEC-CeEEEEE-eecCEEEEEECCCCCeEEccCCCC
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCL-PFAISKHGLVVSG-RNTIYCL-DIVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~-~~~~~~~~~~~~~-~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
.+++.|+.+ ..+.+||..+++....... .....-.+++... +..+++. .....+..+|..+.....+.....
T Consensus 87 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (383)
T 3ei3_B 87 TTVAVGSKG-----GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDS 161 (383)
T ss_dssp TEEEEEEBT-----SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCC
T ss_pred CEEEEEcCC-----CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCC
Confidence 455666554 4688899888776544332 1222233444444 2213333 555678889988765554443221
Q ss_pred c-ceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCE-EEEEcCccccCCCCcc
Q psy2979 188 D-FDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGM-LYVTGGAILEDGDGIE 263 (400)
Q Consensus 188 ~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~-iyv~GG~~~~~~~~~~ 263 (400)
. ..-.+++. -++..++.|+.+ ..+..||.....-..+....... .+++. -++. +++.|+. ++
T Consensus 162 ~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~h~~~v--~~~~~~~~~~~~l~s~~~---d~---- 227 (383)
T 3ei3_B 162 WDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGHEIFKEKLHKAKV--THAEFNPRCDWLMATSSV---DA---- 227 (383)
T ss_dssp SSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSCEEEEEECSSSCE--EEEEECSSCTTEEEEEET---TS----
T ss_pred CCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCCEEEEeccCCCcE--EEEEECCCCCCEEEEEeC---CC----
Confidence 1 11122222 255666777655 46888998544333332211111 12222 2344 7777776 43
Q ss_pred eEEEEeCCC----CceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 264 QVQRYNPKV----NQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 264 ~v~~yd~~~----~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
.+..||..+ ......-. ....-.+++.. ++..++.|+. ...+..||..+.+
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~l~~~~~------d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 228 TVKLWDLRNIKDKNSYIAEMP--HEKPVNAAYFNPTDSTKLLTTDQ------RNEIRVYSSYDWS 284 (383)
T ss_dssp EEEEEEGGGCCSTTCEEEEEE--CSSCEEEEEECTTTSCEEEEEES------SSEEEEEETTBTT
T ss_pred EEEEEeCCCCCcccceEEEec--CCCceEEEEEcCCCCCEEEEEcC------CCcEEEEECCCCc
Confidence 788898876 22222111 11111222222 5677777765 4578889887543
No 149
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.79 E-value=0.046 Score=49.03 Aligned_cols=183 Identities=10% Similarity=0.011 Sum_probs=92.1
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcc-eeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDF-DVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAV 241 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~ 241 (400)
.....+..||..++++..+..+.... .-.+++.. ++..++.|+.+ ..+..||..++++.....+.........
T Consensus 27 ~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~ 101 (372)
T 1k8k_C 27 PNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWTLKGRTWKPTLVILRINRAARC 101 (372)
T ss_dssp CSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEEEETTEEEEEEECCCCSSCEEE
T ss_pred eCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC-----CeEEEEECCCCeeeeeEEeecCCCceeE
Confidence 34466778888777665554443221 12222222 56666677654 3588899888877654332222222222
Q ss_pred EE--eCCEEEEEcCccccCCCCcceEEEEeCCCCc-eeeccCCCC--CceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEE
Q psy2979 242 VA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ-WQDLAPMLI--PRSGAAICAL-DSCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 242 ~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~--~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 315 (400)
.. -++..+++|+. ++ .+..||..+.. |........ ...-.++... ++..++.|+. ...+..
T Consensus 102 ~~~~~~~~~l~~~~~---d~----~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~~ 168 (372)
T 1k8k_C 102 VRWAPNEKKFAVGSG---SR----VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC------DFKCRI 168 (372)
T ss_dssp EEECTTSSEEEEEET---TS----SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET------TSCEEE
T ss_pred EEECCCCCEEEEEeC---CC----EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC------CCCEEE
Confidence 22 25667777776 43 46666665543 332222211 1111222222 6677777765 456888
Q ss_pred EECCCC----------------eEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 316 YHIAEN----------------TWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 316 yd~~~~----------------~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
||.... .-..+..+.........+.+ +++.++.|+. + ..|.+||..+.+
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~i~d~~~~~ 235 (372)
T 1k8k_C 169 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-D-----STVCLADADKKM 235 (372)
T ss_dssp EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-T-----TEEEEEEGGGTT
T ss_pred EEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC-C-----CEEEEEECCCCc
Confidence 885311 00111111111111223333 5666666665 2 468899987765
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.78 E-value=0.21 Score=49.49 Aligned_cols=152 Identities=9% Similarity=0.030 Sum_probs=80.4
Q ss_pred CCeEEEEeCCCCceEEccCCCCcccccEEEE--eCCEEEEEcCccccCCCC-cceEEEEeCCCC-ceeeccCCCCCc---
Q psy2979 213 LDSVERYDPTKNEWSYIEPMKLAVTSPAVVA--HEGMLYVTGGAILEDGDG-IEQVQRYNPKVN-QWQDLAPMLIPR--- 285 (400)
Q Consensus 213 ~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~-~W~~~~~~~~~r--- 285 (400)
...+..+|..+++-..+............+. -+++..+++.. +... ...++.+|+.+. .+..+.......
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEV---NRAQNECKVNAYDAETGRFVRTLFVETDKHYVE 310 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEE---CTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEe---CCCCCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence 3568899999887655542211111112222 25554444333 3222 458999999887 665543111110
Q ss_pred -eeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--C-CEEEEEcCccCCCCCCC
Q psy2979 286 -SGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--D-GKIYVLGGEEGWDGYHD 359 (400)
Q Consensus 286 -~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~-~~lyv~GG~~~~~~~~~ 359 (400)
.......- ++++++.+..++ ...++.+|...+....+....... ...... + +.||+.+.. + .....
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~~~~~v--~~~~~~spdg~~l~~~~~~-~-~~~~~ 382 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTKGEWEV--TNFAGFDPKGTRLYFESTE-A-SPLER 382 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCCSSSCE--EEEEEECTTSSEEEEEESS-S-CTTCB
T ss_pred ccCCceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCCCCeEE--EeeeEEcCCCCEEEEEecC-C-CCceE
Confidence 01122333 677665554332 467999998777777665322111 111233 3 456666543 2 22245
Q ss_pred eEEEEECCCCcEEEec
Q psy2979 360 SIECYDVDNDSWEIMS 375 (400)
Q Consensus 360 ~v~~yd~~~~~W~~~~ 375 (400)
.++.+|..+++.+.+.
T Consensus 383 ~l~~~d~~~~~~~~l~ 398 (706)
T 2z3z_A 383 HFYCIDIKGGKTKDLT 398 (706)
T ss_dssp EEEEEETTCCCCEESC
T ss_pred EEEEEEcCCCCceecc
Confidence 8999999887766654
No 151
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.78 E-value=0.087 Score=47.28 Aligned_cols=194 Identities=13% Similarity=0.057 Sum_probs=96.3
Q ss_pred eEEEECCeEEEEEeecCEEEEEECCCCCeEEccCC---CCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCce
Q psy2979 151 GLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSL---KFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEW 226 (400)
Q Consensus 151 ~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~---~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 226 (400)
+++...+..+........+..+|..+++-...... .....-.+++.. +++.++.|+.+ ..+..||..+++-
T Consensus 87 ~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-----~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 87 DLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-----ICIKVWDLAQQVV 161 (344)
T ss_dssp EEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEE
T ss_pred EEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcE
Confidence 34444444244445556788888877653221110 011111122222 56777777765 3588899988754
Q ss_pred EEccCCCCccccc-EEEE-e-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE---CCeEEEE
Q psy2979 227 SYIEPMKLAVTSP-AVVA-H-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL---DSCIYVL 300 (400)
Q Consensus 227 ~~~~~l~~~~~~~-~~~~-~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~ 300 (400)
... +......- +++. . +..+++.|+. |+ .+..||..+.+-...-...........+.. ++.+++.
T Consensus 162 ~~~--~~~h~~~V~~~~~~~~~~~~l~s~s~---D~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 232 (344)
T 4gqb_B 162 LSS--YRAHAAQVTCVAASPHKDSVFLSCSE---DN----RILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVF 232 (344)
T ss_dssp EEE--ECCCSSCEEEEEECSSCTTEEEEEET---TS----CEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEE
T ss_pred EEE--EcCcCCceEEEEecCCCCCceeeecc---cc----ccccccccccceeeeeecceeeccceeeeecCCCCcceEE
Confidence 322 21111111 1222 2 3357788877 54 688999877653322111111111122222 5578888
Q ss_pred cCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCCCcEE
Q psy2979 301 GGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 301 GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 372 (400)
|+. ...+..||..+++- +..+......-..+.+ ++ ++++.|+. + ..|.+||..+++-.
T Consensus 233 g~~------dg~v~~wd~~~~~~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~-D-----~~i~vwd~~~~~~~ 293 (344)
T 4gqb_B 233 GDE------NGTVSLVDTKSTSC--VLSSAVHSQCVTGLVFSPHSVPFLASLSE-D-----CSLAVLDSSLSELF 293 (344)
T ss_dssp EET------TSEEEEEESCC--C--CEEEECCSSCEEEEEECSSSSCCEEEEET-T-----SCEEEECTTCCEEE
T ss_pred ecc------CCcEEEEECCCCcE--EEEEcCCCCCEEEEEEccCCCeEEEEEeC-C-----CeEEEEECCCCcEE
Confidence 876 45788999876542 1111111112223333 34 56666765 2 35888998887543
No 152
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.75 E-value=0.24 Score=43.02 Aligned_cols=236 Identities=13% Similarity=0.091 Sum_probs=106.2
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcc-cceeeeEEEEC---CeEEEEEeecCEEEEEECCCCCeEEccCCC
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPF-AISKHGLVVSG---RNTIYCLDIVDIVYVAASMHKILHSLGSLK 186 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~-~~~~~~~~~~~---~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~ 186 (400)
..++.|+.+ ..+.+||...+....+..+.. ...-.+++... +..|.....-..+..+|..+++|..+..+.
T Consensus 22 ~~las~s~D-----~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~ 96 (297)
T 2pm7_B 22 KRMATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHA 96 (297)
T ss_dssp SEEEEEETT-----SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEEC
T ss_pred CEEEEEeCC-----CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEee
Confidence 455666655 467778776433221111111 11112233321 331333355567888898887765443322
Q ss_pred CcceeeeEEEE--C--CEEEEEcccCCCCCCCeEEEEeCCCCc-eE--EccCCCCcccccEEEE--------------eC
Q psy2979 187 FDFDVSGIAML--D--GFVYAVGGWDGSCRLDSVERYDPTKNE-WS--YIEPMKLAVTSPAVVA--------------HE 245 (400)
Q Consensus 187 ~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~--~~~~l~~~~~~~~~~~--------------~~ 245 (400)
........+.. + +.+++.|+.+ ..+..||..++. +. .+..-.... .+++. .+
T Consensus 97 ~h~~~v~~v~~~p~~~g~~l~s~s~d-----~~v~~wd~~~~~~~~~~~~~~h~~~v--~~~~~~p~~~~~~~~~~~~~~ 169 (297)
T 2pm7_B 97 VHSASVNSVQWAPHEYGPMLLVASSD-----GKVSVVEFKENGTTSPIIIDAHAIGV--NSASWAPATIEEDGEHNGTKE 169 (297)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEEBCSSSCBCCEEEECCSSCE--EEEEECCCC------------
T ss_pred cCCCceeEEEeCcCCCCcEEEEEECC-----CcEEEEEecCCCceeeeeeecccCcc--ceEeecCCcccccccCCCCCC
Confidence 11111112222 1 4566667655 357777776542 21 010000000 01111 12
Q ss_pred CEEEEEcCccccCCCCcceEEEEeCCCC--ceeeccCCCCCceeeeEEEE--C---CeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 246 GMLYVTGGAILEDGDGIEQVQRYNPKVN--QWQDLAPMLIPRSGAAICAL--D---SCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~r~~~~~~~~--~---~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
++.++.|+. ++ .+..||..+. .|.....+.........+.. + +.+++.|+. ...+..+|.
T Consensus 170 ~~~l~sgs~---D~----~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~------D~~v~iWd~ 236 (297)
T 2pm7_B 170 SRKFVTGGA---DN----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ------DRTCIIWTQ 236 (297)
T ss_dssp CCEEEEEET---TS----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET------TSCEEEEEE
T ss_pred cceEEEEcC---CC----cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC------CCcEEEEEe
Confidence 457778877 54 5666666443 35444333322111222222 2 367777765 346777776
Q ss_pred CC--CeEEEccCC-cCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECC-CCcEEEecCC
Q psy2979 319 AE--NTWEYKSPM-KEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVD-NDSWEIMSHL 377 (400)
Q Consensus 319 ~~--~~W~~~~~~-~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~ 377 (400)
.+ ..|....-. .........+.. ++++++.||. + ..|.+|++. .+.|..+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~-D-----~~v~lw~~~~~g~w~~~~~~ 295 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-D-----NKVTLWKENLEGKWEPAGEV 295 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET-T-----SCEEEEEECTTSCEEEC---
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC-C-----CcEEEEEECCCCcEEecccc
Confidence 55 335431110 100111112222 6777777776 3 246667655 4679887654
No 153
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=96.75 E-value=0.42 Score=46.79 Aligned_cols=234 Identities=12% Similarity=0.053 Sum_probs=125.7
Q ss_pred ceEEEEEcC--C-CceEEccCCc---ccceeeeEEEE-CCeEEEEEeec----------CEEEEEECCC------CCeEE
Q psy2979 125 RSVEGFCVK--T-KVWKTLSCLP---FAISKHGLVVS-GRNTIYCLDIV----------DIVYVAASMH------KILHS 181 (400)
Q Consensus 125 ~~~~~yd~~--~-~~w~~~~~~~---~~~~~~~~~~~-~~~~iyv~~~~----------~~~~~yd~~~------~~w~~ 181 (400)
..++.++.. . +...++...+ ........+.. ++..|+..... ..++.+|..+ ++...
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 181 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE 181 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE
Confidence 467778776 3 5666666543 12222333433 55535544222 4789999887 66555
Q ss_pred cc-CCCCcceeeeEE-EECCEEEEEcccCCCC---CCCeEEEEeCC-CCceEEccCCCCc--ccccEEE-EeCCEEEEEc
Q psy2979 182 LG-SLKFDFDVSGIA-MLDGFVYAVGGWDGSC---RLDSVERYDPT-KNEWSYIEPMKLA--VTSPAVV-AHEGMLYVTG 252 (400)
Q Consensus 182 ~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~---~~~~v~~yd~~-~~~W~~~~~l~~~--~~~~~~~-~~~~~iyv~G 252 (400)
+. .-. ......+ .-+++..++...+... ....++.+|.. ++++.....+... ......+ .-+|++|+.+
T Consensus 182 l~~~~~--~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~ 259 (662)
T 3azo_A 182 LSDDAH--RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVAT 259 (662)
T ss_dssp SSCSCS--SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEE
T ss_pred EEecCC--CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEE
Confidence 54 211 1111222 2255433333332211 13578999998 5633332222211 1111222 2367788776
Q ss_pred CccccCCCCcceEEEEeCCCCceeeccCCCCCce-------eeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 253 GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRS-------GAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 253 G~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~-------~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
.. ++ ...++.+|+.+.++..+.+...... ....+.. ++++++.+.. + ...++.+|..+++..
T Consensus 260 ~~---~~--~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~----~~~l~~~d~~~~~~~ 329 (662)
T 3azo_A 260 DR---TG--WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G----AAVLGILDPESGELV 329 (662)
T ss_dssp CT---TS--SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S----SCEEEEEETTTTEEE
T ss_pred CC---CC--CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C----ccEEEEEECCCCcEE
Confidence 65 43 3479999998888888754322110 1123333 6777777654 2 568999999888877
Q ss_pred EccCCcCccCcceE-EEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 325 YKSPMKEKRYRPGI-AVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 325 ~~~~~~~~~~~~~~-~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
.+...... ...+ ..-++.+++..+. . .....++.+|+.+++.+.+.
T Consensus 330 ~l~~~~~~--~~~~~s~~~~~~~~~~~~-~--~~~~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 330 DAAGPWTE--WAATLTVSGTRAVGVAAS-P--RTAYEVVELDTVTGRARTIG 376 (662)
T ss_dssp ECCSSCCE--EEEEEEEETTEEEEEEEE-T--TEEEEEEEEETTTCCEEEEE
T ss_pred EecCCCCe--EEEEEecCCCEEEEEEcC-C--CCCCEEEEEECCCCceEEee
Confidence 76432111 1122 2336666666543 1 22457899999888887774
No 154
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.75 E-value=0.17 Score=46.59 Aligned_cols=188 Identities=12% Similarity=-0.031 Sum_probs=98.5
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-e
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-H 244 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~ 244 (400)
..++.+|.....-..+..-.. ...+.+. -+++.+++++.++ ....+..+|+.+++...+...+... .+.+. -
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~--~v~~~~~Spdg~~la~~s~~~--~~~~i~~~d~~tg~~~~l~~~~~~~--~~~~~sp 232 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQ--PLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASFPRHN--GAPAFSP 232 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESS--CEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEEEEECCSSCE--EEEEECT
T ss_pred ceEEEEcCCCCCCEEEeCCCC--cceeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCcEEEeecCCCcc--cCEEEcC
Confidence 578888887554433322111 1111221 2555445554432 1257999999999877665443211 12222 2
Q ss_pred CCE-EEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 245 EGM-LYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 245 ~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+++ |++.+.. ++ ...++.+|..+.+...+...+.. .......-+++.+++++.... ...++.+|..+++-
T Consensus 233 dg~~la~~~~~---~g--~~~i~~~d~~~~~~~~l~~~~~~-~~~~~~spdg~~l~~~s~~~g---~~~i~~~d~~~~~~ 303 (415)
T 2hqs_A 233 DGSKLAFALSK---TG--SLNLYVMDLASGQIRQVTDGRSN-NTEPTWFPDSQNLAFTSDQAG---RPQVYKVNINGGAP 303 (415)
T ss_dssp TSSEEEEEECT---TS--SCEEEEEETTTCCEEECCCCSSC-EEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCC
T ss_pred CCCEEEEEEec---CC--CceEEEEECCCCCEEeCcCCCCc-ccceEECCCCCEEEEEECCCC---CcEEEEEECCCCCE
Confidence 454 5545543 33 24799999988877666443221 111111225654444432111 34899999988775
Q ss_pred EEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 324 EYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
..+.... .......+ +|+.+++++. .. ....++.+|+.+++...+.
T Consensus 304 ~~l~~~~---~~~~~~~~spdG~~l~~~~~-~~--g~~~i~~~d~~~~~~~~l~ 351 (415)
T 2hqs_A 304 QRITWEG---SQNQDADVSSDGKFMVMVSS-NG--GQQHIAKQDLATGGVQVLS 351 (415)
T ss_dssp EECCCSS---SEEEEEEECTTSSEEEEEEE-CS--SCEEEEEEETTTCCEEECC
T ss_pred EEEecCC---CcccCeEECCCCCEEEEEEC-cC--CceEEEEEECCCCCEEEec
Confidence 5443211 11112233 5655555443 21 1357999999998887654
No 155
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.74 E-value=0.29 Score=44.17 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=57.3
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCC---C-C-cccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCC
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM---K-L-AVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPK 271 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l---~-~-~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~ 271 (400)
++ +++.|+.+ ..+..||..+.+....-.. . . ...-.+++. -++.++++|+. ++. ...+..||..
T Consensus 197 ~~-~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~---d~~-~g~i~i~d~~ 266 (397)
T 1sq9_A 197 RG-LIATGFNN-----GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD---SNS-FGCITLYETE 266 (397)
T ss_dssp TS-EEEEECTT-----SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE---ETT-EEEEEEEETT
T ss_pred Cc-eEEEEeCC-----CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec---CCC-CceEEEEECC
Confidence 45 66666654 4588899887754332111 1 0 111112222 25677777776 310 1478999987
Q ss_pred CCceee-ccCCC--C--------CceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 272 VNQWQD-LAPML--I--------PRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 272 ~~~W~~-~~~~~--~--------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+.+-.. +...+ . .......+.. ++.+++.|+. ...+..||..+.+-
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW------DGKLRFWDVKTKER 325 (397)
T ss_dssp TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET------TSEEEEEETTTTEE
T ss_pred CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC------CCeEEEEEcCCCce
Confidence 654221 11100 0 1111122222 5677777765 56899999987764
No 156
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.71 E-value=0.32 Score=43.82 Aligned_cols=234 Identities=9% Similarity=-0.041 Sum_probs=117.1
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEE-EECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLV-VSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYA 203 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~-~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv 203 (400)
..++.+|..+++..++...+.. ...... .-++..|+.......++.+|+.+++-..+...+... ..+++.++
T Consensus 60 ~~l~~~d~~~~~~~~l~~~~~~-~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~------~~~g~~l~ 132 (396)
T 3c5m_A 60 RNYYLLNLETQQAVQLTEGKGD-NTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEW------KGYGTWVA 132 (396)
T ss_dssp CEEEEEETTTTEEEECCCSSCB-CTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE------EEEEEEEE
T ss_pred ceEEEEECCCCcEEEeecCCCC-ccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccccc------CCCCCEEE
Confidence 4678889888887766532221 111122 224442444444457888888877655444332210 01111111
Q ss_pred Ecc-------------cC--C----------CCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe-CCE-EEEEcCccc
Q psy2979 204 VGG-------------WD--G----------SCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EGM-LYVTGGAIL 256 (400)
Q Consensus 204 ~GG-------------~~--~----------~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~~-iyv~GG~~~ 256 (400)
+.. .. + ......++.+|+.+++...+..-+... .+....- ++. |+.....
T Consensus 133 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~-~~~~~sp~dg~~l~~~~~~-- 209 (396)
T 3c5m_A 133 NSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWL-GHPIYRPFDDSTVGFCHEG-- 209 (396)
T ss_dssp CTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCE-EEEEEETTEEEEEEEEECS--
T ss_pred eccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCccc-ccceECCCCCCEEEEEecC--
Confidence 110 00 0 022346888999988876664321111 1111222 343 4444321
Q ss_pred cCCCC-cceEEEEeCCCCceeeccCCCCCceeee-EE-EECCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCc
Q psy2979 257 EDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAA-IC-ALDSC-IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEK 332 (400)
Q Consensus 257 ~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~-~~-~~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 332 (400)
.... ...++.+|..+..+..+.. ..+..... .+ .-+++ |+..+ ...... ...++.+|+.+++...+...+..
T Consensus 210 -~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg~~l~~~~-~~~~~~-~~~l~~~d~~~g~~~~l~~~~~~ 285 (396)
T 3c5m_A 210 -PHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDGSAMAYVS-YFKGQT-DRVIYKANPETLENEEVMVMPPC 285 (396)
T ss_dssp -CSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTSSCEEEEE-EETTTC-CEEEEEECTTTCCEEEEEECCSE
T ss_pred -CCCCCCceEEEEECCCCceeEeec-cCCCccccceEECCCCCEEEEEe-cCCCCc-cceEEEEECCCCCeEEeeeCCCC
Confidence 1111 2478999998887777654 22111121 22 22555 44443 221111 24599999998887776554421
Q ss_pred cCcceEEEE-CCEEEEEcCccCC-----------CCCCCeEEEEECCCCcEEEecC
Q psy2979 333 RYRPGIAVI-DGKIYVLGGEEGW-----------DGYHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 333 ~~~~~~~~~-~~~lyv~GG~~~~-----------~~~~~~v~~yd~~~~~W~~~~~ 376 (400)
. ....- +|+++++.+. .. ......++.+|+.+++.+.+..
T Consensus 286 --~-~~~s~~dg~~l~~~~~-~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 337 (396)
T 3c5m_A 286 --S-HLMSNFDGSLMVGDGC-DAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCK 337 (396)
T ss_dssp --E-EEEECSSSSEEEEEEC-CC----------CCCCCCEEEEEETTTTBCCEEEE
T ss_pred --C-CCccCCCCceEEEecC-CcceeeccccccccCCCCcEEEEecccCceEEccC
Confidence 1 22223 6776666442 10 1123689999999887666543
No 157
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=96.68 E-value=0.31 Score=43.18 Aligned_cols=190 Identities=13% Similarity=0.129 Sum_probs=100.5
Q ss_pred EEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccC-C-----CCcccc
Q psy2979 168 IVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEP-M-----KLAVTS 238 (400)
Q Consensus 168 ~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~-l-----~~~~~~ 238 (400)
.+..+|+.+++.........-..-.+++.- ++.+|+....+ ..+.+||+..+ .-..+.. . ......
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~-----~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~ 144 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVAL-----HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQ 144 (329)
T ss_dssp CEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTT-----TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSS
T ss_pred cEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCC-----CEEEEEeCCCCeEEEEEecccCCCCCCccccCC
Confidence 577888877665432211110111223332 67799875432 56899998765 2222211 0 111112
Q ss_pred c-EEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCC-------CCCce-eeeEEEE-C-CeEEEEcCcCC
Q psy2979 239 P-AVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM-------LIPRS-GAAICAL-D-SCIYVLGGWHA 305 (400)
Q Consensus 239 ~-~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~-------~~~r~-~~~~~~~-~-~~iyv~GG~~~ 305 (400)
. .++.. ++.||+..+. . ...+.+||+....-..+... +.... -.+++.- + +.||+....
T Consensus 145 P~~ia~~~~~g~lyv~d~~---~---~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-- 216 (329)
T 3fvz_A 145 PTDVAVEPSTGAVFVSDGY---C---NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-- 216 (329)
T ss_dssp EEEEEECTTTCCEEEEECS---S---CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT--
T ss_pred CcEEEEeCCCCeEEEEeCC---C---CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC--
Confidence 2 33443 6899999852 1 34799999765544443211 11111 2334443 4 899999865
Q ss_pred CCCCCCeEEEEECCCCeEEEccCCc-CccCcceEEEECCEEEEEcCccC-CCCCCCeEEEEECCCCcEEEe
Q psy2979 306 STENTNRVECYHIAENTWEYKSPMK-EKRYRPGIAVIDGKIYVLGGEEG-WDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 306 ~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~ 374 (400)
...+.+||+.+++....-..+ ......+++...+.+|...|... .......+.++|+.+++....
T Consensus 217 ----~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~ 283 (329)
T 3fvz_A 217 ----NGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV 283 (329)
T ss_dssp ----TTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred ----CCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence 568999999866654432211 12112223333466777666411 112345789999888875554
No 158
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=96.68 E-value=0.18 Score=44.74 Aligned_cols=188 Identities=10% Similarity=0.034 Sum_probs=93.4
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEEC----CeEEEEEeecCEEEEEECCCCC--eEEcc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSG----RNTIYCLDIVDIVYVAASMHKI--LHSLG 183 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~----~~~iyv~~~~~~~~~yd~~~~~--w~~~~ 183 (400)
..+++.|+.+ .....+..||..+++............-.+++... +..++.......+..||..+++ ...+.
T Consensus 31 ~~l~~~~s~~--~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 108 (357)
T 3i2n_A 31 AKFVTMGNFA--RGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK 108 (357)
T ss_dssp SEEEEEEC----CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC
T ss_pred ceEEEecCcc--CCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE
Confidence 3566666541 11246888888887755432222222222333332 2313333555678888887664 12221
Q ss_pred CCCCcceeeeEE-------EECCEEEEEcccCCCCCCCeEEEEeCCCCc--eEEccCCCC--cccccEEE-----EeCCE
Q psy2979 184 SLKFDFDVSGIA-------MLDGFVYAVGGWDGSCRLDSVERYDPTKNE--WSYIEPMKL--AVTSPAVV-----AHEGM 247 (400)
Q Consensus 184 ~~~~~r~~~~~~-------~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~l~~--~~~~~~~~-----~~~~~ 247 (400)
.-..+ -.++. .-++..++.|+.+ ..+..||..+++ ...+..... ...-.+++ ..++.
T Consensus 109 ~~~~~--v~~~~~~~~~~~s~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 181 (357)
T 3i2n_A 109 GHKEI--INAIDGIGGLGIGEGAPEIVTGSRD-----GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER 181 (357)
T ss_dssp CCSSC--EEEEEEESGGGCC-CCCEEEEEETT-----SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC
T ss_pred ecccc--eEEEeeccccccCCCccEEEEEeCC-----CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC
Confidence 11111 11111 1245566667655 358888988764 333332221 11112222 14677
Q ss_pred EEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE----CCeEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 248 LYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL----DSCIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 248 iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
+++.|+. + ..+..||..+.+-........+ ..++... ++..++.|+. ...+..||..+.
T Consensus 182 ~l~~~~~---d----~~i~i~d~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~ 244 (357)
T 3i2n_A 182 VVCAGYD---N----GDIKLFDLRNMALRWETNIKNG--VCSLEFDRKDISMNKLVATSL------EGKFHVFDMRTQ 244 (357)
T ss_dssp EEEEEET---T----SEEEEEETTTTEEEEEEECSSC--EEEEEESCSSSSCCEEEEEES------TTEEEEEEEEEE
T ss_pred EEEEEcc---C----CeEEEEECccCceeeecCCCCc--eEEEEcCCCCCCCCEEEEECC------CCeEEEEeCcCC
Confidence 7777776 4 3799999987764333222222 2223332 4667777765 457888887653
No 159
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.68 E-value=0.57 Score=46.25 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=72.6
Q ss_pred EEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCc--------ceeeeEEEECCEEEEEcccCCCCCCCeEEEEeC
Q psy2979 152 LVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFD--------FDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDP 221 (400)
Q Consensus 152 ~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 221 (400)
-++.++. ||+......++.+|..+++ |+.-...+.. ....+.+..+++||+... ...+..+|.
T Consensus 73 P~v~~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~------dg~l~alD~ 145 (677)
T 1kb0_A 73 PVVVDGI-MYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------DGRLIALDA 145 (677)
T ss_dssp CEEETTE-EEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT------TSEEEEEET
T ss_pred CEEECCE-EEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC------CCEEEEEEC
Confidence 3556888 9998767789999998775 8765443211 112345567889988643 246899999
Q ss_pred CCCc--eEEccC-C-CC-cccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCc--eeec
Q psy2979 222 TKNE--WSYIEP-M-KL-AVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQ--WQDL 278 (400)
Q Consensus 222 ~~~~--W~~~~~-l-~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~--W~~~ 278 (400)
.+++ |+.-.. - +. .....+.++.++.+|+..+. .... ...+..||..+.+ |+.-
T Consensus 146 ~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~---~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 146 ATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGG---AEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp TTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBC---TTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecc---cccCCCCEEEEEECCCCcEEEEec
Confidence 8874 876432 1 11 11222335568888876542 1111 3579999988765 8754
No 160
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.65 E-value=0.3 Score=42.76 Aligned_cols=200 Identities=11% Similarity=0.022 Sum_probs=109.0
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeec---CEEEEEECCCCCeEEccCCCCcceeeeEEEE-CC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIV---DIVYVAASMHKILHSLGSLKFDFDVSGIAML-DG 199 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~---~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~ 199 (400)
..+..+|+..+ .......+ ..-++++.. ++. +|+.... ..++.+|+.+++...+...+..+...+.+.. ++
T Consensus 53 ~~I~~~d~~g~-~~~~~~~~--~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~ 128 (306)
T 2p4o_A 53 GEIVSITPDGN-QQIHATVE--GKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT 128 (306)
T ss_dssp TEEEEECTTCC-EEEEEECS--SEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS
T ss_pred CeEEEECCCCc-eEEEEeCC--CCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC
Confidence 46788887654 22222222 233455554 556 8888432 2588999888888776655444443343333 45
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCc---eEEccC----CC-Ccc-cccEEEEeCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNE---WSYIEP----MK-LAV-TSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~----l~-~~~-~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
.+|+.-- ....++++|+.+++ |..-+. .+ ... ...++..-++.+|+.--. .+.+++||.
T Consensus 129 ~~~v~d~-----~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~-------~~~I~~~~~ 196 (306)
T 2p4o_A 129 QYLTADS-----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE-------KMLLLRIPV 196 (306)
T ss_dssp EEEEEET-----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT-------TTEEEEEEB
T ss_pred cEEEEEC-----CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCC-------CCEEEEEEe
Confidence 6777532 12478999987652 211111 11 111 112233345689988544 458999998
Q ss_pred CCC-ce---eeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEEC---
Q psy2979 271 KVN-QW---QDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVID--- 342 (400)
Q Consensus 271 ~~~-~W---~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~--- 342 (400)
..+ +. +....+..| .+++.- +|.+|+.... .+.|.+||+. ++...+...+.+...+..++++
T Consensus 197 ~~~g~~~~~~~~~~~~~P---~gi~vd~dG~l~va~~~------~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~ 266 (306)
T 2p4o_A 197 DSTDKPGEPEIFVEQTNI---DDFAFDVEGNLYGATHI------YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTE 266 (306)
T ss_dssp CTTSCBCCCEEEEESCCC---SSEEEBTTCCEEEECBT------TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCST
T ss_pred CCCCCCCccEEEeccCCC---CCeEECCCCCEEEEeCC------CCeEEEECCC-CCEEEEeecccccCCceEEEEeccc
Confidence 652 21 111112122 223333 6789888643 4679999986 5544443333333445556654
Q ss_pred ---CEEEEEcC
Q psy2979 343 ---GKIYVLGG 350 (400)
Q Consensus 343 ---~~lyv~GG 350 (400)
+.|||...
T Consensus 267 ~d~~~LyVt~~ 277 (306)
T 2p4o_A 267 GDCTAIYVVTN 277 (306)
T ss_dssp TTTTEEEEEEC
T ss_pred CCCCEEEEECC
Confidence 68999754
No 161
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.64 E-value=0.15 Score=47.21 Aligned_cols=186 Identities=13% Similarity=0.066 Sum_probs=90.4
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCC-cccceeeeEEEE--CCeEEEEEeecCEEEEEECCCCCeEEccCCCC
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCL-PFAISKHGLVVS--GRNTIYCLDIVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~-~~~~~~~~~~~~--~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
.+++.|+.+ ..+.++|..+++...+..+ .....-.+++.. ++..|+....-..+..+|..++..........
T Consensus 133 ~~lasGs~d-----g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 207 (435)
T 4e54_B 133 STVAVGSKG-----GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDT 207 (435)
T ss_dssp TCEEEEETT-----SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSS
T ss_pred CEEEEEeCC-----CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCC
Confidence 355666655 4677888776553322211 112222334443 34413333444567888987765544433221
Q ss_pred cc-eeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe---CCEEEEEcCccccCCCCc
Q psy2979 188 DF-DVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH---EGMLYVTGGAILEDGDGI 262 (400)
Q Consensus 188 ~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~ 262 (400)
.. ...++... ++.+++.|+.+ ..+..||...+.- ..+......-..+.+ ++.+++.|+. ++
T Consensus 208 ~~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~~~~~~---~~~~~h~~~v~~v~~~p~~~~~~~s~s~---d~--- 273 (435)
T 4e54_B 208 INIWFCSLDVSASSRMVVTGDNV-----GNVILLNMDGKEL---WNLRMHKKKVTHVALNPCCDWFLATASV---DQ--- 273 (435)
T ss_dssp CSCCCCCEEEETTTTEEEEECSS-----SBEEEEESSSCBC---CCSBCCSSCEEEEEECTTCSSEEEEEET---TS---
T ss_pred CCccEEEEEECCCCCEEEEEeCC-----CcEeeeccCccee---EEEecccceEEeeeecCCCceEEEEecC---cc---
Confidence 11 11222222 56777777765 3588888765432 222211111122222 3457777776 44
Q ss_pred ceEEEEeCCCCceeeccCCCCCc-eeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 263 EQVQRYNPKVNQWQDLAPMLIPR-SGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 263 ~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
.+..||..+..-...-....+. .....+.+ ++..++.|+. ...+..||..+..
T Consensus 274 -~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~------D~~i~iwd~~~~~ 329 (435)
T 4e54_B 274 -TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ------KSEIRVYSASQWD 329 (435)
T ss_dssp -BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES------SSCEEEEESSSSS
T ss_pred -eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC------CCEEEEEECCCCc
Confidence 5778887654322110000111 11111111 5677777765 4578888887653
No 162
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=96.63 E-value=0.3 Score=42.35 Aligned_cols=189 Identities=16% Similarity=0.156 Sum_probs=100.0
Q ss_pred EEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC---
Q psy2979 160 IYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL--- 234 (400)
Q Consensus 160 iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~--- 234 (400)
+|++ .....++.||+.++ ........ ..-.+++. -++.+|+.... ...+.+||+.+++...+.....
T Consensus 42 l~~~~~~~~~i~~~~~~~~-~~~~~~~~--~~~~~l~~~~dg~l~v~~~~-----~~~i~~~d~~~g~~~~~~~~~~~~~ 113 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ-LSPEMHPS--HHQNGHCLNKQGHLIACSHG-----LRRLERQREPGGEWESIADSFEGKK 113 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC-EEEEESSC--SSEEEEEECTTCCEEEEETT-----TTEEEEECSTTCCEEEEECEETTEE
T ss_pred EEEEeCCCCEEEEEECCCC-eEEEECCC--CCcceeeECCCCcEEEEecC-----CCeEEEEcCCCCcEEEEeeccCCCC
Confidence 5555 44567889999887 55443311 11123333 26778876431 2469999998888776643211
Q ss_pred -cccccEEEEeCCEEEEE----cCcccc----C-CCC-cceEEEEeCCCCceeecc-CCCCCceeeeEEEE-CCeEEEEc
Q psy2979 235 -AVTSPAVVAHEGMLYVT----GGAILE----D-GDG-IEQVQRYNPKVNQWQDLA-PMLIPRSGAAICAL-DSCIYVLG 301 (400)
Q Consensus 235 -~~~~~~~~~~~~~iyv~----GG~~~~----~-~~~-~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~-~~~iyv~G 301 (400)
.+....+..-+|.+|+. |..... . ... ...++++|+. .+...+. .+..+ .+++.. ++++++.+
T Consensus 114 ~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~---~gi~~s~dg~~lv~~ 189 (296)
T 3e5z_A 114 LNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP---NGLAFLPSGNLLVSD 189 (296)
T ss_dssp CCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE---EEEEECTTSCEEEEE
T ss_pred CCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC---ccEEECCCCCEEEEe
Confidence 11222333347889997 321000 0 000 3479999987 5444442 22222 223332 56666554
Q ss_pred CcCCCCCCCCeEEEEECC-CCeE-EEccCCcCccCcc-eEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 302 GWHASTENTNRVECYHIA-ENTW-EYKSPMKEKRYRP-GIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 302 G~~~~~~~~~~v~~yd~~-~~~W-~~~~~~~~~~~~~-~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
.. ...+++||+. +++. ............+ +++.- +|+||+..+ ..|.+||+.......+
T Consensus 190 ~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~--------~~v~~~~~~g~~~~~~ 252 (296)
T 3e5z_A 190 TG------DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASAG--------DGVHVLTPDGDELGRV 252 (296)
T ss_dssp TT------TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEET--------TEEEEECTTSCEEEEE
T ss_pred CC------CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEcC--------CeEEEECCCCCEEEEE
Confidence 33 4689999986 4554 1111111111111 23322 688998762 3689999986655544
No 163
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=96.62 E-value=0.15 Score=44.75 Aligned_cols=227 Identities=12% Similarity=0.075 Sum_probs=107.5
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcc----cceeeeEEEE-CCeEEEEEe------------ecCEEEEE
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPF----AISKHGLVVS-GRNTIYCLD------------IVDIVYVA 172 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~----~~~~~~~~~~-~~~~iyv~~------------~~~~~~~y 172 (400)
+.+++.+..+ ..+..+|+.+++-...-..+. ....+.++.. ++..+|+.. ....+..+
T Consensus 46 ~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~ 120 (337)
T 1pby_B 46 RIAYATVNKS-----ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120 (337)
T ss_dssp SEEEEEETTT-----TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred CEEEEEeCCC-----CeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEE
Confidence 3566655422 468899988876543211111 0012334443 443366663 34789999
Q ss_pred ECCCCCeEEccCCCCcceeeeEEEE-CC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC-cccccEEEEeCCEEE
Q psy2979 173 ASMHKILHSLGSLKFDFDVSGIAML-DG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL-AVTSPAVVAHEGMLY 249 (400)
Q Consensus 173 d~~~~~w~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~-~~~~~~~~~~~~~iy 249 (400)
|+.+.+....-+.. ..-..++.. ++ .||+.+ ..+..||+.+++-...-+... .+ ......-+..+|
T Consensus 121 d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~--------~~i~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~ 189 (337)
T 1pby_B 121 DAETLSRRKAFEAP--RQITMLAWARDGSKLYGLG--------RDLHVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVW 189 (337)
T ss_dssp ETTTTEEEEEEECC--SSCCCEEECTTSSCEEEES--------SSEEEEETTTTEEEEEECSTTTTT-TTBCCCBCCCCC
T ss_pred ECCCCcEEEEEeCC--CCcceeEECCCCCEEEEeC--------CeEEEEECCCCcEeeeeeccccCC-CceeCCCccEEe
Confidence 99877644322211 111222222 34 477662 358899998876543222211 11 111111122233
Q ss_pred EEcCccc----------cCC-C----C-cceEEEEeCCCCceeeccCCCCCceeeeEEEE-CC-eEEEEcCcCCCCCCCC
Q psy2979 250 VTGGAIL----------EDG-D----G-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DS-CIYVLGGWHASTENTN 311 (400)
Q Consensus 250 v~GG~~~----------~~~-~----~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~ 311 (400)
+.+.... ..+ . . ...+..||+.+.+-..+...+......+++.. ++ .+|+. ..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---------~~ 260 (337)
T 1pby_B 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---------YN 260 (337)
T ss_dssp CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---------ES
T ss_pred eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---------CC
Confidence 3221100 000 0 0 12688999988765422211111111223332 44 45544 14
Q ss_pred eEEEEECCCCeEEEccCCcCccCcceEEEE-CC-EEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 312 RVECYHIAENTWEYKSPMKEKRYRPGIAVI-DG-KIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 312 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+..||+.+.+-...-..+ ....+++.. ++ .||+. +. ...|.+||+.+.+
T Consensus 261 ~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~-~~------~~~i~v~d~~~~~ 312 (337)
T 1pby_B 261 VLESFDLEKNASIKRVPLP--HSYYSVNVSTDGSTVWLG-GA------LGDLAAYDAETLE 312 (337)
T ss_dssp EEEEEETTTTEEEEEEECS--SCCCEEEECTTSCEEEEE-SB------SSEEEEEETTTCC
T ss_pred eEEEEECCCCcCcceecCC--CceeeEEECCCCCEEEEE-cC------CCcEEEEECcCCc
Confidence 7999999887643322221 122223322 44 46664 43 2579999998775
No 164
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=96.62 E-value=0.002 Score=49.76 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=52.6
Q ss_pred eEEEE-CCeEEehhhHHHhhcCccccccc------eeecCCCCHHHHH---HHhhhcc----------------------
Q psy2979 20 VTLCV-DGSKFPAHRVVLAASSPYFKVLE------TIRLPQLSPYFLH---DCVEQCA---------------------- 67 (400)
Q Consensus 20 v~l~~-~~~~~~~hr~vLaa~s~yf~~m~------~vrl~~l~~~~l~---~~i~~~~---------------------- 67 (400)
|+|.. ||+.|.+||.| |.+|+||+.|- .|.|+.++...|. ++.+.+.
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~w 82 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVW 82 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HH
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHH
Confidence 67777 89999999998 89999999883 4899999998555 4444432
Q ss_pred ----cccCchhHHHHHHHHHhcCCCc
Q psy2979 68 ----IIKNNPQCAQLVEEAKLFHLLP 89 (400)
Q Consensus 68 ----l~~~~~~c~~~l~~a~~~~~~~ 89 (400)
+-.+...+.+++.+|..+++.+
T Consensus 83 D~~F~~vd~~~l~eLi~AAnyL~I~~ 108 (141)
T 1fs1_B 83 DQEFLKVDQGTLFELILAANYLDIKG 108 (141)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhhH
Confidence 3445667788888887776544
No 165
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=96.60 E-value=0.35 Score=42.79 Aligned_cols=183 Identities=12% Similarity=0.089 Sum_probs=96.6
Q ss_pred EEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEE-EECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCc--
Q psy2979 160 IYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIA-MLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLA-- 235 (400)
Q Consensus 160 iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~-- 235 (400)
+|++ .....++.||+.+++...... +. .-.+++ .-++++|+... ..+.+||+.+++...+...+..
T Consensus 63 l~~~d~~~~~i~~~d~~~~~~~~~~~-~~--~v~~i~~~~dg~l~v~~~-------~gl~~~d~~~g~~~~~~~~~~~~~ 132 (326)
T 2ghs_A 63 AWWFNILERELHELHLASGRKTVHAL-PF--MGSALAKISDSKQLIASD-------DGLFLRDTATGVLTLHAELESDLP 132 (326)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEC-SS--CEEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEEECSSTTCT
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEC-CC--cceEEEEeCCCeEEEEEC-------CCEEEEECCCCcEEEEeeCCCCCC
Confidence 6666 345689999998876554332 21 112222 24788887542 3489999999988776543321
Q ss_pred --ccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccC-CCCCceeeeEEEE-CC-eEEEEcCcCCCCCC
Q psy2979 236 --VTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAP-MLIPRSGAAICAL-DS-CIYVLGGWHASTEN 309 (400)
Q Consensus 236 --~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~ 309 (400)
+....+..-+|++|+..... .... ...+++|| +.+...+.. ... ..+.+.. ++ .+|+....
T Consensus 133 ~~~~~~i~~d~~G~l~v~~~~~--~~~~~~~~l~~~~--~g~~~~~~~~~~~---~~~i~~s~dg~~lyv~~~~------ 199 (326)
T 2ghs_A 133 GNRSNDGRMHPSGALWIGTMGR--KAETGAGSIYHVA--KGKVTKLFADISI---PNSICFSPDGTTGYFVDTK------ 199 (326)
T ss_dssp TEEEEEEEECTTSCEEEEEEET--TCCTTCEEEEEEE--TTEEEEEEEEESS---EEEEEECTTSCEEEEEETT------
T ss_pred CCCCCCEEECCCCCEEEEeCCC--cCCCCceEEEEEe--CCcEEEeeCCCcc---cCCeEEcCCCCEEEEEECC------
Confidence 11222223367888753210 1111 45799998 455544321 111 1123322 44 57777543
Q ss_pred CCeEEEEECC--CC-e------EEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 310 TNRVECYHIA--EN-T------WEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 310 ~~~v~~yd~~--~~-~------W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
...+++||.. ++ . +..+.. ....+....+ +|.+|+.... ...|.+||+....-..+
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~---~~~~p~gi~~d~~G~lwva~~~------~~~v~~~d~~g~~~~~i 266 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTG---IKGGMDGSVCDAEGHIWNARWG------EGAVDRYDTDGNHIARY 266 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTT---SSSEEEEEEECTTSCEEEEEET------TTEEEEECTTCCEEEEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCC---CCCCCCeeEECCCCCEEEEEeC------CCEEEEECCCCCEEEEE
Confidence 4589999975 44 2 222211 1111223333 5778886421 13689999955433333
No 166
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.36 Score=42.81 Aligned_cols=234 Identities=10% Similarity=-0.013 Sum_probs=107.2
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcc
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDF 189 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r 189 (400)
..++.|+.+ ..+.+||..+++-...-.- ....-.+++.. ++..++.......+..+|..+++....-....+
T Consensus 45 ~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~- 117 (369)
T 3zwl_B 45 DLLFSCSKD-----SSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVP- 117 (369)
T ss_dssp CEEEEEESS-----SCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSC-
T ss_pred CEEEEEeCC-----CEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC-
Confidence 344555543 4678888877654321111 11112233333 334133335556788899887764433222111
Q ss_pred eeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCc----eEEccCCCC-----ccc--ccEEEE--eCCEEEEEcCcc
Q psy2979 190 DVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNE----WSYIEPMKL-----AVT--SPAVVA--HEGMLYVTGGAI 255 (400)
Q Consensus 190 ~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~----W~~~~~l~~-----~~~--~~~~~~--~~~~iyv~GG~~ 255 (400)
-.+++.. ++..++.++.+.......+..||..+.. +.....-+. ... ...... -+++.+++|+.
T Consensus 118 -v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 195 (369)
T 3zwl_B 118 -VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK- 195 (369)
T ss_dssp -EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET-
T ss_pred -eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC-
Confidence 1122222 4555555554322223457777665442 221111110 000 112222 25666677766
Q ss_pred ccCCCCcceEEEEeCCCC-ce-eeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCc
Q psy2979 256 LEDGDGIEQVQRYNPKVN-QW-QDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEK 332 (400)
Q Consensus 256 ~~~~~~~~~v~~yd~~~~-~W-~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 332 (400)
+ ..+..||..+. .- ..+..... .-.+++.. ++..++.|+. ...+..||..+.+....-..+.
T Consensus 196 --d----g~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~- 260 (369)
T 3zwl_B 196 --D----GKISKYDVSNNYEYVDSIDLHEK--SISDMQFSPDLTYFITSSR------DTNSFLVDVSTLQVLKKYETDC- 260 (369)
T ss_dssp --T----SEEEEEETTTTTEEEEEEECCSS--CEEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEECSS-
T ss_pred --C----CEEEEEECCCCcEeEEEEecCCC--ceeEEEECCCCCEEEEecC------CceEEEEECCCCceeeeecCCC-
Confidence 4 37999998763 22 22211111 11122222 6666777765 4589999998776443322111
Q ss_pred cCcceEEEE--CCEEEEEcCccCCC--------CCCCeEEEEECCCCc
Q psy2979 333 RYRPGIAVI--DGKIYVLGGEEGWD--------GYHDSIECYDVDNDS 370 (400)
Q Consensus 333 ~~~~~~~~~--~~~lyv~GG~~~~~--------~~~~~v~~yd~~~~~ 370 (400)
....+.+ +++..++|+.++.. .....+..||..+.+
T Consensus 261 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 261 --PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp --CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred --CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 1112222 45555555441211 112268888887764
No 167
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.58 E-value=0.046 Score=48.98 Aligned_cols=156 Identities=13% Similarity=0.185 Sum_probs=86.3
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc-cEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS-PAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~-~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
++.+++.||.+ ..+..||..+++|.....+...... -..+. -++..++.|+. ++ .+..||..+..
T Consensus 27 ~g~~las~~~D-----~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~---D~----~v~iw~~~~~~ 94 (345)
T 3fm0_A 27 AGTLLASCGGD-----RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF---DA----TTCIWKKNQDD 94 (345)
T ss_dssp TSSCEEEEETT-----SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET---TS----CEEEEEECCC-
T ss_pred CCCEEEEEcCC-----CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC---CC----cEEEEEccCCC
Confidence 56677777765 3588888888877543322221111 11222 26777788877 54 57778877776
Q ss_pred eeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCe-EEEccCCcCccCcceEEEE--CCEEEEEc
Q psy2979 275 WQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENT-WEYKSPMKEKRYRPGIAVI--DGKIYVLG 349 (400)
Q Consensus 275 W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~--~~~lyv~G 349 (400)
+..+..+.........+.. ++.+++.|+. ...+..||..+.. +..+..+.........+.. ++++++.|
T Consensus 95 ~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 168 (345)
T 3fm0_A 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSR------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASA 168 (345)
T ss_dssp EEEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEE
T ss_pred eEEEEEccCCCCCceEEEEeCCCCEEEEEEC------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEE
Confidence 6554433322111222222 6777777776 4567888876542 3322222211111222333 56677777
Q ss_pred CccCCCCCCCeEEEEECCCCcEEEecCC
Q psy2979 350 GEEGWDGYHDSIECYDVDNDSWEIMSHL 377 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~~~~~W~~~~~~ 377 (400)
+. + ..|..||..++.|.....+
T Consensus 169 s~-d-----~~i~~w~~~~~~~~~~~~~ 190 (345)
T 3fm0_A 169 SY-D-----DTVKLYREEEDDWVCCATL 190 (345)
T ss_dssp ET-T-----SCEEEEEEETTEEEEEEEE
T ss_pred eC-C-----CcEEEEEecCCCEEEEEEe
Confidence 76 2 3578899888888765444
No 168
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.57 E-value=0.22 Score=43.81 Aligned_cols=178 Identities=16% Similarity=0.260 Sum_probs=94.3
Q ss_pred EECCeEEEEEeecCEEEEEECC-CCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCC-ceEEcc
Q psy2979 154 VSGRNTIYCLDIVDIVYVAASM-HKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKN-EWSYIE 230 (400)
Q Consensus 154 ~~~~~~iyv~~~~~~~~~yd~~-~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~ 230 (400)
..++. +|+......++.||+. ...|....+.+ ...+.+.. ++.||+.. .+ ..+..||+... .|....
T Consensus 105 ~~~~~-l~v~t~~~~l~~~d~~g~~~~~~~~~~~---~~~~~~~~~~g~l~vgt-~~-----~~l~~~d~~g~~~~~~~~ 174 (330)
T 3hxj_A 105 IFEDI-LYVTSMDGHLYAINTDGTEKWRFKTKKA---IYATPIVSEDGTIYVGS-ND-----NYLYAINPDGTEKWRFKT 174 (330)
T ss_dssp EETTE-EEEECTTSEEEEECTTSCEEEEEECSSC---CCSCCEECTTSCEEEEC-TT-----SEEEEECTTSCEEEEEEC
T ss_pred EECCE-EEEEecCCEEEEEcCCCCEEEEEcCCCc---eeeeeEEcCCCEEEEEc-CC-----CEEEEECCCCCEeEEEec
Confidence 34777 8887666789999988 23365433211 11222333 66777742 21 45889998822 365432
Q ss_pred CCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCC-CceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCC
Q psy2979 231 PMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKV-NQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTE 308 (400)
Q Consensus 231 ~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~ 308 (400)
+.......+..-++.||+.. . .+++||+.. ..|+...+... ..+.+.. ++.||+...
T Consensus 175 --~~~~~~~~~~d~~g~l~v~t-~---------~l~~~d~~g~~~~~~~~~~~~---~~~~~~~~~g~l~v~t~------ 233 (330)
T 3hxj_A 175 --NDAITSAASIGKDGTIYFGS-D---------KVYAINPDGTEKWNFYAGYWT---VTRPAISEDGTIYVTSL------ 233 (330)
T ss_dssp --SSCCCSCCEECTTCCEEEES-S---------SEEEECTTSCEEEEECCSSCC---CSCCEECTTSCEEEEET------
T ss_pred --CCCceeeeEEcCCCEEEEEe-C---------EEEEECCCCcEEEEEccCCcc---eeceEECCCCeEEEEcC------
Confidence 22222222222478888765 2 478888543 23665432211 1222333 557887642
Q ss_pred CCCeEEEEECCCCe-EEEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCC-cEEE
Q psy2979 309 NTNRVECYHIAENT-WEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDND-SWEI 373 (400)
Q Consensus 309 ~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~ 373 (400)
...+.+||+.... |..-...+ .. ...+.. ++.||+.... ..+++||+... .|+.
T Consensus 234 -~~gl~~~~~~g~~~~~~~~~~~--~~-~~~~~~~~g~l~v~t~~-------ggl~~~d~~g~~~~~~ 290 (330)
T 3hxj_A 234 -DGHLYAINPDGTEKWRFKTGKR--IE-SSPVIGNTDTIYFGSYD-------GHLYAINPDGTEKWNF 290 (330)
T ss_dssp -TTEEEEECTTSCEEEEEECSSC--CC-SCCEECTTSCEEEECTT-------CEEEEECTTSCEEEEE
T ss_pred -CCeEEEECCCCCEeEEeeCCCC--cc-ccceEcCCCeEEEecCC-------CCEEEECCCCcEEEEE
Confidence 2468888875554 54432211 11 122233 6788875432 36899998543 3554
No 169
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.22 Score=44.29 Aligned_cols=182 Identities=10% Similarity=0.006 Sum_probs=86.4
Q ss_pred cCEEEEEECCCCCeEEccCCCCcc-eeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDF-DVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA 243 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~ 243 (400)
...+..+|..+++-.. .+.... .-.+++.. ++..++.|+.+ ..+..||..+++....-..+.+.. .....
T Consensus 53 dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~v~-~~~~~ 124 (369)
T 3zwl_B 53 DSSASVWYSLNGERLG--TLDGHTGTIWSIDVDCFTKYCVTGSAD-----YSIKLWDVSNGQCVATWKSPVPVK-RVEFS 124 (369)
T ss_dssp SSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETT-----TEEEEEETTTCCEEEEEECSSCEE-EEEEC
T ss_pred CCEEEEEeCCCchhhh--hhhhcCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEEeecCCCeE-EEEEc
Confidence 3456677776654322 111111 11122222 45666667654 468889988876544332222211 11112
Q ss_pred eCCEEEEEcCccccCCCC-cceEEEEeCCCCc----eeeccCCCCC-----c--eeeeEEEE--CCeEEEEcCcCCCCCC
Q psy2979 244 HEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQ----WQDLAPMLIP-----R--SGAAICAL--DSCIYVLGGWHASTEN 309 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~----W~~~~~~~~~-----r--~~~~~~~~--~~~iyv~GG~~~~~~~ 309 (400)
-++..+++++. +... ...+..||..+.. +......+.. . .....+.. ++..+++|+.
T Consensus 125 ~~~~~l~~~~~---~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------ 195 (369)
T 3zwl_B 125 PCGNYFLAILD---NVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK------ 195 (369)
T ss_dssp TTSSEEEEEEC---CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET------
T ss_pred cCCCEEEEecC---CccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC------
Confidence 25555555554 2111 2367777765442 1111111100 0 01122222 5666777765
Q ss_pred CCeEEEEECCC-CeEE-EccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEE
Q psy2979 310 TNRVECYHIAE-NTWE-YKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 310 ~~~v~~yd~~~-~~W~-~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
...+..||..+ ..-. .+... ......+.+ +++.++.|+. + ..|.+||..+.+...
T Consensus 196 dg~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~-d-----~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 196 DGKISKYDVSNNYEYVDSIDLH---EKSISDMQFSPDLTYFITSSR-D-----TNSFLVDVSTLQVLK 254 (369)
T ss_dssp TSEEEEEETTTTTEEEEEEECC---SSCEEEEEECTTSSEEEEEET-T-----SEEEEEETTTCCEEE
T ss_pred CCEEEEEECCCCcEeEEEEecC---CCceeEEEECCCCCEEEEecC-C-----ceEEEEECCCCceee
Confidence 46899999987 3322 22211 111222333 5666677765 2 478899988765443
No 170
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.35 Score=41.81 Aligned_cols=219 Identities=10% Similarity=0.057 Sum_probs=98.2
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCC-eEEccCCCCcceeeeEEEECCEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKI-LHSLGSLKFDFDVSGIAMLDGFVY 202 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~-w~~~~~~~~~r~~~~~~~~~~~iy 202 (400)
..+.+||..+++........ ...-.+++.. ++..+++......+..++..... ...+..+............++..+
T Consensus 39 g~v~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 117 (313)
T 3odt_A 39 GTVRLWSKDDQWLGTVVYTG-QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVV 117 (313)
T ss_dssp SEEEEEEESSSEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEE
T ss_pred CcEEEEECCCCEEEEEeecC-CccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEE
Confidence 46788887665433221111 1112233333 33313333444556666655432 111111111111112222355566
Q ss_pred EEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC
Q psy2979 203 AVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML 282 (400)
Q Consensus 203 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 282 (400)
+.|+.+ ..+..||....... +.....+.........++..++.|+. ++ .+..||.... -.......
T Consensus 118 ~~~~~d-----~~i~~~d~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~---d~----~i~i~d~~~~-~~~~~~~~ 183 (313)
T 3odt_A 118 ISGSWD-----KTAKVWKEGSLVYN-LQAHNASVWDAKVVSFSENKFLTASA---DK----TIKLWQNDKV-IKTFSGIH 183 (313)
T ss_dssp EEEETT-----SEEEEEETTEEEEE-EECCSSCEEEEEEEETTTTEEEEEET---TS----CEEEEETTEE-EEEECSSC
T ss_pred EEEeCC-----CCEEEEcCCcEEEe-cccCCCceeEEEEccCCCCEEEEEEC---CC----CEEEEecCce-EEEEeccC
Confidence 666654 35777882222221 11111122111222226667777776 44 6888883322 22222211
Q ss_pred CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCe
Q psy2979 283 IPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDS 360 (400)
Q Consensus 283 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 360 (400)
..........-++. ++.|+. ...+..||..+.+-... +.........+.+ +++ ++.|+. ...
T Consensus 184 ~~~i~~~~~~~~~~-~~~~~~------dg~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~-l~~~~~------dg~ 247 (313)
T 3odt_A 184 NDVVRHLAVVDDGH-FISCSN------DGLIKLVDMHTGDVLRT--YEGHESFVYCIKLLPNGD-IVSCGE------DRT 247 (313)
T ss_dssp SSCEEEEEEEETTE-EEEEET------TSEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSC-EEEEET------TSE
T ss_pred cccEEEEEEcCCCe-EEEccC------CCeEEEEECCchhhhhh--hhcCCceEEEEEEecCCC-EEEEec------CCE
Confidence 12222222333666 666665 56899999887653221 1111111222333 454 455554 246
Q ss_pred EEEEECCCCcEEEe
Q psy2979 361 IECYDVDNDSWEIM 374 (400)
Q Consensus 361 v~~yd~~~~~W~~~ 374 (400)
|.+||..+++....
T Consensus 248 v~iwd~~~~~~~~~ 261 (313)
T 3odt_A 248 VRIWSKENGSLKQV 261 (313)
T ss_dssp EEEECTTTCCEEEE
T ss_pred EEEEECCCCceeEE
Confidence 88999888764443
No 171
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=96.51 E-value=0.25 Score=40.17 Aligned_cols=144 Identities=12% Similarity=0.091 Sum_probs=84.5
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCC--ceE--Ec----cCCCCcccccEEEEe--CCEEEEEcCccccCCCCc
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKN--EWS--YI----EPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGI 262 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~--~~----~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~ 262 (400)
+++.+++++|++=| ..+++++.... ... .+ +.||... . ++... ++++|++-|.
T Consensus 11 Ai~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~I-D-Aa~~~~~~~~~yfFkG~-------- 73 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRKL-D-SVFEEPLSKKLFFFSGR-------- 73 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSSC-S-EEEECTTTCCEEEEETT--------
T ss_pred EEEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhhccCCCCCCc-c-EEEEECCCCeEEEEeCC--------
Confidence 35557999999977 56788876542 221 12 3455422 1 23332 7899999887
Q ss_pred ceEEEEeCCCCce-eeccC--CCCC--ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-----cc-CCc-
Q psy2979 263 EQVQRYNPKVNQW-QDLAP--MLIP--RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEY-----KS-PMK- 330 (400)
Q Consensus 263 ~~v~~yd~~~~~W-~~~~~--~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-----~~-~~~- 330 (400)
..|+|+..+..- ..+.. +|.. .-.++....++++|++-|. ..++||..+++=.. +. ..+
T Consensus 74 -~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~--------~ywr~d~~~~~~~~gyPr~i~~~w~G 144 (195)
T 1itv_A 74 -QVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR--------RLWRFDVKAQMVDPRSASEVDRMFPG 144 (195)
T ss_dssp -EEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT--------EEEEEETTTTEECGGGCEEHHHHSTT
T ss_pred -EEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeCC--------EEEEEeCCcccccCCCccChhhcCCC
Confidence 688888542111 01111 2221 2223333237899999763 79999988764211 11 111
Q ss_pred CccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 331 EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 331 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+...-++...+|++|++-|. ..|+||..+..
T Consensus 145 vp~~idaa~~~~g~~Yffkg~--------~y~~~~~~~~~ 176 (195)
T 1itv_A 145 VPLDTHDVFQFREKAYFCQDR--------FYWRVSSRSEL 176 (195)
T ss_dssp SCSSCSEEEEETTEEEEEETT--------EEEEEECCTTC
T ss_pred CCCCCCEEEEeCCeEEEEeCC--------EEEEEECCccE
Confidence 122334455568999999886 68999988765
No 172
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.51 E-value=0.0087 Score=54.21 Aligned_cols=147 Identities=12% Similarity=0.136 Sum_probs=75.2
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCc-
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQ- 274 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~- 274 (400)
++.+++.|+.+ ..+..||..++.|..+..+......-....+ ++..++.|+. ++ .+..||..+..
T Consensus 22 ~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---d~----~v~vwd~~~~~~ 89 (377)
T 3dwl_C 22 QRTEFVTTTAT-----NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ---DR----NAYVYEKRPDGT 89 (377)
T ss_dssp SSSEEECCCSS-----SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET---TS----SEEEC------C
T ss_pred CCCEEEEecCC-----CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC---CC----eEEEEEcCCCCc
Confidence 45666666654 3577888888888777666533322222222 5677777776 44 68888888776
Q ss_pred eeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCe-EEEccCCcC-ccCcceEEEE--CCEEEEE
Q psy2979 275 WQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENT-WEYKSPMKE-KRYRPGIAVI--DGKIYVL 348 (400)
Q Consensus 275 W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~-~~~~~~~~~~--~~~lyv~ 348 (400)
|.....+.........+.. ++..++.|+. ...+..||..+++ |.....+.. .......+.+ ++++++.
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSG------ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEES------SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEec------CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 5444333222222222222 5667777765 4568888887664 322222222 1112223333 5677777
Q ss_pred cCccCCCCCCCeEEEEECCC
Q psy2979 349 GGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 349 GG~~~~~~~~~~v~~yd~~~ 368 (400)
|+. + ..|.+||..+
T Consensus 164 ~~~-d-----~~i~iwd~~~ 177 (377)
T 3dwl_C 164 GCA-D-----RKAYVLSAYV 177 (377)
T ss_dssp EES-S-----SCEEEEEECC
T ss_pred EeC-C-----CEEEEEEEEe
Confidence 776 2 3578888753
No 173
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=96.50 E-value=0.27 Score=43.36 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=73.8
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
+.+++.++.+ ..+.++|+.+++....-..+.....+.++.. ++..+|+. .....++.+|+.+++....-..+.
T Consensus 11 ~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 11 HEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp CEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred CEEEEEeCCC-----CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence 4566665543 5788999988875433222321122344444 34326666 345689999998876543222211
Q ss_pred -----cceeeeEEEE-CC-EEEEEccc---CCC---CCCCeEEEEeCCCCceEE-ccCCCCcccccEE-EEeCCEEEEEc
Q psy2979 188 -----DFDVSGIAML-DG-FVYAVGGW---DGS---CRLDSVERYDPTKNEWSY-IEPMKLAVTSPAV-VAHEGMLYVTG 252 (400)
Q Consensus 188 -----~r~~~~~~~~-~~-~iyv~GG~---~~~---~~~~~v~~yd~~~~~W~~-~~~l~~~~~~~~~-~~~~~~iyv~G 252 (400)
...-..++.. ++ .+|+.+.. ... .....+..||+.+++-.. +...+.+..-.++ ..-++++|+.+
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~~ 165 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG 165 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEEcc
Confidence 1111222322 34 56665421 000 012578899988743211 1111111222222 23366677743
Q ss_pred CccccCCCCcceEEEEeCCCCce
Q psy2979 253 GAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 253 G~~~~~~~~~~~v~~yd~~~~~W 275 (400)
+ .+..+|+.+.+-
T Consensus 166 ~----------~i~~~d~~~~~~ 178 (349)
T 1jmx_B 166 P----------DIYKMDVKTGKY 178 (349)
T ss_dssp S----------SEEEECTTTCCE
T ss_pred C----------cEEEEeCCCCce
Confidence 3 377777766553
No 174
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.48 E-value=0.49 Score=43.10 Aligned_cols=198 Identities=14% Similarity=0.103 Sum_probs=111.1
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAV 241 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~ 241 (400)
...+.+..+++.......+.+. ...-.+++.. ++.||+.-- ....+.++++.....+.+........ .++
T Consensus 93 ~~~~~I~~i~~~~~~~~~~~~~--~~~~~gl~~d~~~~~ly~~D~-----~~~~I~r~~~~g~~~~~~~~~~~~~p-~gl 164 (386)
T 3v65_B 93 ANRIDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDV-----TLDRILRANLNGSNVEEVVSTGLESP-GGL 164 (386)
T ss_dssp ECBSCEEEECTTSCCCEEEECS--CSCEEEEEEETTTTEEEEEET-----TTTEEEEEETTSCCEEEEECSSCSCC-CCE
T ss_pred ecCccceeeccCCCcEEEEecC--CCccEEEEEecCCCeEEEEeC-----CCCcEEEEecCCCCcEEEEeCCCCCc-cEE
Confidence 3446778888887766554431 1222334433 578998742 23579999998876655432111111 233
Q ss_pred EE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEE
Q psy2979 242 VA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 242 ~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~ 315 (400)
++ .++.||+.... ...++++++....-+.+. .+..| .++++- ++.||+..-.. ...+++
T Consensus 165 avd~~~g~lY~~d~~-------~~~I~~~~~dg~~~~~l~~~~l~~P---~giavdp~~g~ly~td~~~-----~~~I~r 229 (386)
T 3v65_B 165 AVDWVHDKLYWTDSG-------TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN-----TPRIEA 229 (386)
T ss_dssp EEETTTTEEEEEETT-------TTEEEECBTTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEECSS-----SCEEEE
T ss_pred EEEeCCCeEEEEcCC-------CCeEEEEeCCCCceEEeecCCCCCC---cEEEEEcCCCeEEEeccCC-----CCEEEE
Confidence 33 47899998654 357888888765433332 23333 233333 68899886321 368999
Q ss_pred EECCCCeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec--CCCCCCCceeeEEEc
Q psy2979 316 YHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS--HLPSARSWLGCVPLQ 390 (400)
Q Consensus 316 yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~~ 390 (400)
+++....-..+.. .....+...++ +++||+.-.. .+.|+++|+....-+.+. .++.| .++++.+
T Consensus 230 ~~~dG~~~~~~~~--~~~~~PnGlavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~~~~~~~P---~giav~~ 298 (386)
T 3v65_B 230 SSMDGSGRRIIAD--THLFWPNGLTIDYAGRRMYWVDAK------HHVIERANLDGSHRKAVISQGLPHP---FAITVFE 298 (386)
T ss_dssp EETTSCSCEEEEC--SSCSCEEEEEEEGGGTEEEEEETT------TTEEEEECTTSCSCEEEECSSCSSE---EEEEEET
T ss_pred EeCCCCCcEEEEE--CCCCCeeeEEEeCCCCEEEEEECC------CCEEEEEeCCCCeeEEEEECCCCCc---eEEEEEC
Confidence 9987654333321 11122333333 6899998543 368999998764433332 23222 5666655
Q ss_pred ccccc
Q psy2979 391 IHKSQ 395 (400)
Q Consensus 391 ~~~~~ 395 (400)
+..|+
T Consensus 299 ~~ly~ 303 (386)
T 3v65_B 299 DSLYW 303 (386)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 54443
No 175
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.48 E-value=0.17 Score=43.31 Aligned_cols=184 Identities=11% Similarity=-0.026 Sum_probs=96.3
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCC-CceEEccCCCC-cccccEEEE
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTK-NEWSYIEPMKL-AVTSPAVVA 243 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~l~~-~~~~~~~~~ 243 (400)
..++.+|+.+++...+..... .-.+++. -+++.+++++ + ..+..||+.+ ++...+...+. .........
T Consensus 22 ~~i~~~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQTPE--LFEAPNWSPDGKYLLLNS-E-----GLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp EEEEEEETTTTEEEEEEEESS--CCEEEEECTTSSEEEEEE-T-----TEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred eeEEEEeCCCCceeeeccCCc--ceEeeEECCCCCEEEEEc-C-----CeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 457778887776554433211 1112222 2455555554 1 4789999998 87766654332 222222233
Q ss_pred eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCe-EEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 244 HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSC-IYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
-+++.+++++. +......++.+|..+.....+..... ...+... +++ |++.++.++ ...++.++..++
T Consensus 94 pdg~~l~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~ 163 (297)
T 2ojh_A 94 PDGALYAISDK---VEFGKSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSG 163 (297)
T ss_dssp TTSSEEEEEEC---TTTSSCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEETT----EEEEEEEETTTC
T ss_pred CCCCEEEEEEe---CCCCcceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCCC----ceEEEEEECCCC
Confidence 35655555553 21114589999988776655543222 1222222 454 444454321 336788888877
Q ss_pred eEEEccCCcCccCcceEEEE--CCE-EEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 322 TWEYKSPMKEKRYRPGIAVI--DGK-IYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 322 ~W~~~~~~~~~~~~~~~~~~--~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
....+...+.. ...... +++ |++.+.. + ....+|.+++.+.....+.
T Consensus 164 ~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~-~---~~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 164 VETRLTHGEGR---NDGPDYSPDGRWIYFNSSR-T---GQMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp CEEECCCSSSC---EEEEEECTTSSEEEEEECT-T---SSCEEEEEETTSSCEEECC
T ss_pred cceEcccCCCc---cccceECCCCCEEEEEecC-C---CCccEEEECCCCCCcEEEe
Confidence 77665543321 122223 454 5554433 2 2467888888777766654
No 176
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=96.47 E-value=0.48 Score=47.09 Aligned_cols=234 Identities=8% Similarity=-0.107 Sum_probs=116.8
Q ss_pred ccceEEEEEcCCCceEEccCCcccc-----------------------eeeeEEEE-CCeEEEEEeecCEEEEEECCCC-
Q psy2979 123 VLRSVEGFCVKTKVWKTLSCLPFAI-----------------------SKHGLVVS-GRNTIYCLDIVDIVYVAASMHK- 177 (400)
Q Consensus 123 ~~~~~~~yd~~~~~w~~~~~~~~~~-----------------------~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~- 177 (400)
....+..+|..+++...+....... .-...+.. ++. .+++.....++.+|..++
T Consensus 62 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~~~i~~~d~~~~~ 140 (741)
T 2ecf_A 62 NQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ-RLLFPLGGELYLYDLKQEG 140 (741)
T ss_dssp TEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSS-EEEEEETTEEEEEESSSCS
T ss_pred cccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC-EEEEEeCCcEEEEECCCCC
Confidence 3458899999988876654322110 11233333 455 444433488999999877
Q ss_pred --CeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc----------------ccc
Q psy2979 178 --ILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV----------------TSP 239 (400)
Q Consensus 178 --~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~----------------~~~ 239 (400)
....+...... .......-+++..+++.. ..++.+|..+++...+....... ...
T Consensus 141 ~~~~~~l~~~~~~-~~~~~~SPDG~~la~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~ 213 (741)
T 2ecf_A 141 KAAVRQLTHGEGF-ATDAKLSPKGGFVSFIRG------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTG 213 (741)
T ss_dssp TTSCCBCCCSSSC-EEEEEECTTSSEEEEEET------TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCS
T ss_pred cceEEEcccCCcc-cccccCCCCCCEEEEEeC------CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccc
Confidence 54443332111 111111125543333321 36999999988776664322210 111
Q ss_pred EEEEeCCEEEEEcCccccCC---------------------------CC--cceEEEEeCCC-CceeeccCC-CCCc-ee
Q psy2979 240 AVVAHEGMLYVTGGAILEDG---------------------------DG--IEQVQRYNPKV-NQWQDLAPM-LIPR-SG 287 (400)
Q Consensus 240 ~~~~~~~~iyv~GG~~~~~~---------------------------~~--~~~v~~yd~~~-~~W~~~~~~-~~~r-~~ 287 (400)
..-.-+++..+++.. ++ .. ...++.+|..+ .+-..+... .... ..
T Consensus 214 ~~~SpDg~~l~~~~~---d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 290 (741)
T 2ecf_A 214 YWWAPDDSAIAYARI---DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLA 290 (741)
T ss_dssp EEECTTSSCEEEEEE---ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEE
T ss_pred eEECCCCCEEEEEEE---cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEE
Confidence 122234543333322 11 00 23788889877 665444322 1111 12
Q ss_pred eeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCcc----CcceEEEECCEEEEEcCccCCCCCCCeEEE
Q psy2979 288 AAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR----YRPGIAVIDGKIYVLGGEEGWDGYHDSIEC 363 (400)
Q Consensus 288 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~----~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~ 363 (400)
.... -+++.++++..+.... ...++.+|+.+++...+....... .......-+|++++.+.. ++ ...+|.
T Consensus 291 ~~~~-pDg~~l~~~~~~~~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~-~g---~~~l~~ 364 (741)
T 2ecf_A 291 RVNW-RDPQHLSFQRQSRDQK-KLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSER-TG---FQHLYR 364 (741)
T ss_dssp EEEE-EETTEEEEEEEETTSS-EEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECT-TS---SCEEEE
T ss_pred EEEe-CCCCEEEEEEecccCC-eEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecC-CC---ccEEEE
Confidence 2223 4555444443322222 568999999998876654322111 111122226776666654 22 357888
Q ss_pred EECCCCcEEEe
Q psy2979 364 YDVDNDSWEIM 374 (400)
Q Consensus 364 yd~~~~~W~~~ 374 (400)
+|..+. ++.+
T Consensus 365 ~~~~~~-~~~l 374 (741)
T 2ecf_A 365 IDSKGK-AAAL 374 (741)
T ss_dssp ECSSSC-EEES
T ss_pred EcCCCC-eeee
Confidence 887665 5554
No 177
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.47 E-value=0.5 Score=43.09 Aligned_cols=194 Identities=13% Similarity=0.113 Sum_probs=108.3
Q ss_pred EEEEeecCEEEEEECCC--CCeEEccCCCCcceeeeEEEE---CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC---
Q psy2979 160 IYCLDIVDIVYVAASMH--KILHSLGSLKFDFDVSGIAML---DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP--- 231 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~--~~w~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~--- 231 (400)
||+.. ..-++.++... .+|....+......-.+++.- .+.||+.+.. +. .-..+++.+....+|+.+..
T Consensus 25 l~vgt-~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~-g~-~g~gl~~s~D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 25 LLVAT-IKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAART-GH-LGPTVFRSDDGGGNWTEATRPPA 101 (394)
T ss_dssp EEEEE-TTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCC
T ss_pred EEEEe-cCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecC-CC-CCccEEEeCCCCCCceECCcccc
Confidence 55543 24467777654 689876422222233344433 4678876532 11 01247777777889998853
Q ss_pred CCCcc---------cccEEEEe----CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCC---CC------------
Q psy2979 232 MKLAV---------TSPAVVAH----EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM---LI------------ 283 (400)
Q Consensus 232 l~~~~---------~~~~~~~~----~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~------------ 283 (400)
++... .-.+++.. .+.||+.+.. ..+++.+-...+|+.+... |.
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~--------ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~ 173 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSP--------QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGT 173 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEET--------TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEecC--------CcEEEEcCCCCCeEECcCccCCccccccccccccCC
Confidence 22111 01123332 5778875422 3689998888999988532 21
Q ss_pred --CceeeeEEEE---CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCC------cCc-----cCcceEEEE-C--CE
Q psy2979 284 --PRSGAAICAL---DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPM------KEK-----RYRPGIAVI-D--GK 344 (400)
Q Consensus 284 --~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~------~~~-----~~~~~~~~~-~--~~ 344 (400)
....+.++.. .+.||+... ...+++.+-...+|+.+... |.. ...+.++.. . +.
T Consensus 174 ~~~~~i~~i~~d~~~~~~l~vg~~-------~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~ 246 (394)
T 3b7f_A 174 PDGPKMHSILVDPRDPKHLYIGMS-------SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDI 246 (394)
T ss_dssp CCCCEEEEEEECTTCTTCEEEEEE-------TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTE
T ss_pred CCCCceeEEEECCCCCCEEEEEEC-------CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCE
Confidence 1122344433 356777643 23588888788899987531 211 112222222 2 67
Q ss_pred EEEEcCccCCCCCCCeEEEEECCCCcEEEecC-CCC
Q psy2979 345 IYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH-LPS 379 (400)
Q Consensus 345 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~ 379 (400)
||+..+ ..+++++-...+|+.+.. +|.
T Consensus 247 l~vg~~--------~gl~~s~D~G~tW~~~~~~l~~ 274 (394)
T 3b7f_A 247 LYQQNH--------CGIYRMDRREGVWKRIGDAMPR 274 (394)
T ss_dssp EEEEET--------TEEEEEETTTTEEECGGGGSCT
T ss_pred EEEEcC--------CeEEEeCCCCCcceECCCCCCC
Confidence 777432 358899988999999854 554
No 178
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.45 E-value=0.17 Score=45.15 Aligned_cols=167 Identities=11% Similarity=0.125 Sum_probs=86.0
Q ss_pred CEEEEEECCCCCeEEccCCC--CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE
Q psy2979 167 DIVYVAASMHKILHSLGSLK--FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA 243 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~--~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~ 243 (400)
..+..+|..+++|.....+. ....-.+++.. ++..++.|+.++ .+..||..++.+..+..+......-..+.
T Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~~~h~~~v~~v~ 112 (345)
T 3fm0_A 38 RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA-----TTCIWKKNQDDFECVTTLEGHENEVKSVA 112 (345)
T ss_dssp SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECCC-EEEEEEECCCSSCEEEEE
T ss_pred CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC-----cEEEEEccCCCeEEEEEccCCCCCceEEE
Confidence 45666776666664322211 11111222222 566777777653 47778877776655443332111112222
Q ss_pred --eCCEEEEEcCccccCCCCcceEEEEeCCCCc-eeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 244 --HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ-WQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 244 --~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
-+++.++.|+. ++ .+..||..+.. +..+..+.........+.. ++.+++.|+. ...+..||.
T Consensus 113 ~sp~~~~l~s~s~---D~----~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~------d~~i~~w~~ 179 (345)
T 3fm0_A 113 WAPSGNLLATCSR---DK----SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY------DDTVKLYRE 179 (345)
T ss_dssp ECTTSSEEEEEET---TS----CEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET------TSCEEEEEE
T ss_pred EeCCCCEEEEEEC---CC----eEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC------CCcEEEEEe
Confidence 26777888877 54 68888876543 3322222211111122222 5677777776 457888998
Q ss_pred CCCeEEEccCCcCccCcceEEEE--CCEEEEEcCc
Q psy2979 319 AENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGE 351 (400)
Q Consensus 319 ~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~ 351 (400)
.++.|.....+.........+.+ +++.++.|+.
T Consensus 180 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 180 EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred cCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence 88888755443322222223333 5667777766
No 179
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.45 E-value=0.12 Score=46.56 Aligned_cols=212 Identities=13% Similarity=-0.030 Sum_probs=99.1
Q ss_pred eEEEEEcCCCceEEccCCc---ccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCc-ceeeeEEEE-C-
Q psy2979 126 SVEGFCVKTKVWKTLSCLP---FAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD-FDVSGIAML-D- 198 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~---~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~-r~~~~~~~~-~- 198 (400)
.+.++|..+++-....... ....-.+++.. ++..+........+..+|..+++.... +... ..-.+++.. +
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~--~~~h~~~v~~v~~s~~~ 193 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS--YNAHSSEVNCVAACPGK 193 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTC
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE--EcCCCCCEEEEEEccCC
Confidence 5777887665432211111 11112233333 334133335556788889887653321 1111 111122222 2
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe---CCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH---EGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
+.+++.||.+ ..+..||..+.+-...............+.. ++.+++.|+. ++ .+..||..+.+-
T Consensus 194 ~~~~~s~~~d-----g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~---d~----~i~~wd~~~~~~ 261 (357)
T 4g56_B 194 DTIFLSCGED-----GRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE---TG----NVSLVNIKNPDS 261 (357)
T ss_dssp SSCEEEEETT-----SCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES---SS----CEEEEESSCGGG
T ss_pred CceeeeeccC-----CceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec---cc----ceeEEECCCCcE
Confidence 3467777755 3588889887653322222222222222222 4677888876 43 688899876542
Q ss_pred eeccCCCCCceeeeEEEE--CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEc
Q psy2979 276 QDLAPMLIPRSGAAICAL--DS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLG 349 (400)
Q Consensus 276 ~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~G 349 (400)
.. .+.........+.+ ++ .+++.|+. ...+..||..+++....-.. ...-..+.+ ++++++.|
T Consensus 262 ~~--~~~~~~~~v~~l~~sp~~~~~lasgs~------D~~i~iwd~~~~~~~~~~~H---~~~V~~vafsP~d~~~l~s~ 330 (357)
T 4g56_B 262 AQ--TSAVHSQNITGLAYSYHSSPFLASISE------DCTVAVLDADFSEVFRDLSH---RDFVTGVAWSPLDHSKFTTV 330 (357)
T ss_dssp CE--EECCCSSCEEEEEECSSSSCCEEEEET------TSCEEEECTTSCEEEEECCC---SSCEEEEEECSSSTTEEEEE
T ss_pred eE--EEeccceeEEEEEEcCCCCCEEEEEeC------CCEEEEEECCCCcEeEECCC---CCCEEEEEEeCCCCCEEEEE
Confidence 11 11111111122222 34 56666665 35788999988765443211 111122332 57778888
Q ss_pred CccCCCCCCCeEEEEECCC
Q psy2979 350 GEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~~~ 368 (400)
|. + ..|.+||..+
T Consensus 331 s~-D-----g~v~iW~~~~ 343 (357)
T 4g56_B 331 GW-D-----HKVLHHHLPS 343 (357)
T ss_dssp ET-T-----SCEEEEECC-
T ss_pred cC-C-----CeEEEEECCC
Confidence 87 3 3577888654
No 180
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.42 E-value=0.46 Score=42.09 Aligned_cols=252 Identities=11% Similarity=0.055 Sum_probs=118.8
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCc-ccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCc
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLP-FAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD 188 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~-~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~ 188 (400)
..++.|+.+ ..+..||..+........+. ....-.+++.. ++..++.......+..+|..+++.........
T Consensus 55 ~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~- 128 (368)
T 3mmy_A 55 NFLIAGSWA-----NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDA- 128 (368)
T ss_dssp EEEEEEETT-----SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS-
T ss_pred eEEEEECCC-----CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccC-
Confidence 556666654 46788887763222111111 11111233333 33313333555678889988876554332211
Q ss_pred ceeeeEEE---ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceE
Q psy2979 189 FDVSGIAM---LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 189 r~~~~~~~---~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v 265 (400)
.-.++.. -++.+++.|+.+ ..+..||..+++-... +.......+.....+.+++.++. ..+
T Consensus 129 -~v~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------~~i 192 (368)
T 3mmy_A 129 -PVKTIHWIKAPNYSCVMTGSWD-----KTLKFWDTRSSNPMMV--LQLPERCYCADVIYPMAVVATAE--------RGL 192 (368)
T ss_dssp -CEEEEEEEECSSCEEEEEEETT-----SEEEEECSSCSSCSEE--EECSSCEEEEEEETTEEEEEEGG--------GCE
T ss_pred -ceEEEEEEeCCCCCEEEEccCC-----CcEEEEECCCCcEEEE--EecCCCceEEEecCCeeEEEeCC--------CcE
Confidence 1122222 256777777765 4588899887642221 11112222333445555444332 367
Q ss_pred EEEeCCCCc--eeeccCCCCCceeeeEEEECC----eEEEEcCcCCCCCCCCeEEEEECCCCeE-----EEccC--Cc--
Q psy2979 266 QRYNPKVNQ--WQDLAPMLIPRSGAAICALDS----CIYVLGGWHASTENTNRVECYHIAENTW-----EYKSP--MK-- 330 (400)
Q Consensus 266 ~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~----~iyv~GG~~~~~~~~~~v~~yd~~~~~W-----~~~~~--~~-- 330 (400)
..||..... +..................+. ..++.|+. ...+..||.....- ..... ..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 193 IVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI------EGRVAIHYINPPNPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp EEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET------TSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred EEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC------CCcEEEEecCCCCccccceeeeeeeccccc
Confidence 788776543 333322211111112222222 23566655 45788888876521 11100 00
Q ss_pred ----CccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC-CCCceeeEEEccccccccc
Q psy2979 331 ----EKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS-ARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 331 ----~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~~~~~~~ 398 (400)
........+.+ ++++++.|+. + ..|.+||..+.+- +..++. ...-.+++.-.+..++..+
T Consensus 267 ~~~~~~~~~v~~~~~sp~~~~l~s~~~-d-----g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPVHGTLATVGS-D-----GRFSFWDKDARTK--LKTSEQLDQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp -CCCEEECCEEEEEECTTTCCEEEEET-T-----SCEEEEETTTTEE--EEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred ccccccccceEEEEEecCCCEEEEEcc-C-----CeEEEEECCCCcE--EEEecCCCCCceEEEECCCCCeEEEE
Confidence 00001222333 5667777776 2 4689999887643 333332 2223344444555555544
No 181
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.40 E-value=0.45 Score=41.74 Aligned_cols=143 Identities=13% Similarity=0.146 Sum_probs=73.5
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeec
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL 278 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~ 278 (400)
.+++.|+.+ ..+..||..+.+....-.-..... .+++ .-++.+++.|+. ++ .+..||..+.+-.
T Consensus 186 ~~~~s~~~d-----~~i~i~d~~~~~~~~~~~~h~~~v-~~~~~s~~~~~l~s~s~---Dg----~i~iwd~~~~~~~-- 250 (340)
T 4aow_A 186 PIIVSCGWD-----KLVKVWNLANCKLKTNHIGHTGYL-NTVTVSPDGSLCASGGK---DG----QAMLWDLNEGKHL-- 250 (340)
T ss_dssp CEEEEEETT-----SCEEEEETTTTEEEEEECCCSSCE-EEEEECTTSSEEEEEET---TC----EEEEEETTTTEEE--
T ss_pred cEEEEEcCC-----CEEEEEECCCCceeeEecCCCCcE-EEEEECCCCCEEEEEeC---CC----eEEEEEeccCcee--
Confidence 455666654 357888988776433211111111 1222 236778888887 54 6888988765432
Q ss_pred cCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEc-cCCc--C---cc-CcceEEEE--CCEEEEEc
Q psy2979 279 APMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYK-SPMK--E---KR-YRPGIAVI--DGKIYVLG 349 (400)
Q Consensus 279 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~~--~---~~-~~~~~~~~--~~~lyv~G 349 (400)
..+........+....+..++.++. ...+..||..+..-... .... . .. .....+.+ +++.++.|
T Consensus 251 ~~~~~~~~v~~~~~~~~~~~~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 324 (340)
T 4aow_A 251 YTLDGGDIINALCFSPNRYWLCAAT------GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 324 (340)
T ss_dssp EEEECSSCEEEEEECSSSSEEEEEE------TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEE
T ss_pred eeecCCceEEeeecCCCCceeeccC------CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEE
Confidence 2222222222333334444555554 45788899887754322 1111 0 11 11122233 67777778
Q ss_pred CccCCCCCCCeEEEEECCCC
Q psy2979 350 GEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~~~~ 369 (400)
+. + ..|.+||.+++
T Consensus 325 s~-D-----g~v~iW~~~tG 338 (340)
T 4aow_A 325 YT-D-----NLVRVWQVTIG 338 (340)
T ss_dssp ET-T-----SCEEEEEEEC-
T ss_pred eC-C-----CEEEEEeCCCc
Confidence 76 3 35888888775
No 182
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=96.38 E-value=0.53 Score=42.37 Aligned_cols=246 Identities=8% Similarity=-0.114 Sum_probs=119.8
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEE--EECCEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIA--MLDGFVY 202 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~--~~~~~iy 202 (400)
..++.+|+.+++..++...+..........-++..|+.......++.+|+.+++-..+...+......... .-+++.+
T Consensus 60 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l 139 (388)
T 3pe7_A 60 WNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKL 139 (388)
T ss_dssp CEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred ceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCee
Confidence 47889999998887776544222211222234542554444467889999888766554444332221111 1233333
Q ss_pred EE----cccC-------------CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe-CCEEEEEcCccccCCCC-cc
Q psy2979 203 AV----GGWD-------------GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDG-IE 263 (400)
Q Consensus 203 v~----GG~~-------------~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~-~~ 263 (400)
+. +... .......++.+|+.+++-..+..-+.. ..+....- +++..++.... .... ..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~sp~dg~~l~~~~~~--~~~~~~~ 216 (388)
T 3pe7_A 140 VGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQW-LGHPIYRPYDDSTVAFCHEG--PHDLVDA 216 (388)
T ss_dssp EEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSC-EEEEEEETTEEEEEEEEECS--CTTTSSC
T ss_pred ccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCcc-ccccEECCCCCCEEEEEEec--CCCCCcc
Confidence 21 0000 011235788999998876655432211 12222233 44433332221 1111 45
Q ss_pred eEEEEeCCCCceeeccCCCCCc-eeeeEEEECCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCc------cCc
Q psy2979 264 QVQRYNPKVNQWQDLAPMLIPR-SGAAICALDSC-IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEK------RYR 335 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~------~~~ 335 (400)
.++.+|..+.....+....... ..+....-+++ |+..+.. .... ...++.+|+.+++-..+...+.. ...
T Consensus 217 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~-~~~~-~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 294 (388)
T 3pe7_A 217 RMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYL-KGSP-DRFIYSADPETLENRQLTSMPACSHLMSNYDG 294 (388)
T ss_dssp SEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEE-TTCC-CEEEEEECTTTCCEEEEEEECCEEEEEECTTS
T ss_pred eEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecC-CCCC-cceEEEEecCCCceEEEEcCCCceeeeecCCC
Confidence 7999998877766665433211 11122222555 5443322 1111 23599999999887666544320 011
Q ss_pred ceEEEECC-EEEEEcCcc--CCCCCCCeEEEEECCCCcEEEecC
Q psy2979 336 PGIAVIDG-KIYVLGGEE--GWDGYHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 336 ~~~~~~~~-~lyv~GG~~--~~~~~~~~v~~yd~~~~~W~~~~~ 376 (400)
. ...-+| .|++..... ........|+++|+.+++-+.+..
T Consensus 295 ~-~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 337 (388)
T 3pe7_A 295 S-LMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVAR 337 (388)
T ss_dssp S-EEEEEECCC------------CCCCEEEEEETTTTEEEEEEE
T ss_pred C-eEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecc
Confidence 1 222233 343321000 001224689999999988777654
No 183
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.37 E-value=0.6 Score=42.91 Aligned_cols=224 Identities=14% Similarity=0.144 Sum_probs=119.2
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecC--EEEEEECCCCCe-EEccCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVD--IVYVAASMHKIL-HSLGSL 185 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~--~~~~yd~~~~~w-~~~~~~ 185 (400)
+.+++.... ...+..+|+.+++-..+.... ...+ ++.. ++..+|+..... .++.+++..+.- ..+...
T Consensus 142 g~lyv~d~~-----~~~I~~id~~~g~~~~~~~~~--~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~ 213 (409)
T 3hrp_A 142 NTVLAYQRD-----DPRVRLISVDDNKVTTVHPGF--KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQL 213 (409)
T ss_dssp TEEEEEETT-----TTEEEEEETTTTEEEEEEETC--CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEEC
T ss_pred CCEEEEecC-----CCcEEEEECCCCEEEEeeccC--CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeec
Confidence 456665432 247888999887655443221 1122 3332 333277774322 899999875532 233111
Q ss_pred C--CcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC---CCCcccc-c-EEEEe--CCEEEEEcCc
Q psy2979 186 K--FDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP---MKLAVTS-P-AVVAH--EGMLYVTGGA 254 (400)
Q Consensus 186 ~--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---l~~~~~~-~-~~~~~--~~~iyv~GG~ 254 (400)
. ....-.+++.. ++.||+... ...+.+||+.++....+.. ....... . .++.. ++.+|+....
T Consensus 214 ~~~~~~~p~~iav~p~~g~lyv~d~------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 214 GSTFSGKIGAVALDETEEWLYFVDS------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp CTTSCSCCCBCEECTTSSEEEEECT------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred cchhcCCcEEEEEeCCCCeEEEEEC------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 1 11122233333 678999432 2479999999887555421 1111222 1 44444 6899998654
Q ss_pred cccCCCCcceEEEEeCCCCceeeccCCCC----------C--ceeeeEEEE-CCeEEEEcC-cCCCCCCCCeEEEEECCC
Q psy2979 255 ILEDGDGIEQVQRYNPKVNQWQDLAPMLI----------P--RSGAAICAL-DSCIYVLGG-WHASTENTNRVECYHIAE 320 (400)
Q Consensus 255 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~----------~--r~~~~~~~~-~~~iyv~GG-~~~~~~~~~~v~~yd~~~ 320 (400)
...+++||+....-........ . ..-.+++.- ++.||+... . ...+.++|+.+
T Consensus 288 -------~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~------~~~I~~~~~~~ 354 (409)
T 3hrp_A 288 -------LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK------GYCLRKLDILD 354 (409)
T ss_dssp -------TTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT------TCEEEEEETTT
T ss_pred -------CCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC------CCEEEEEECCC
Confidence 3579999987652222211100 0 011233333 678999875 3 56899999777
Q ss_pred CeEEEccCCc------------CccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEEC
Q psy2979 321 NTWEYKSPMK------------EKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 321 ~~W~~~~~~~------------~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~ 366 (400)
+..+.+...+ .....+..+++ ++.|||.... .+.|.+|++
T Consensus 355 G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~------n~~Ir~i~~ 408 (409)
T 3hrp_A 355 GYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW------GKAIRKYAV 408 (409)
T ss_dssp TEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST------TCEEEEEEE
T ss_pred CEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC------CCeEEEEEe
Confidence 7766554221 01123334444 4889987643 245666654
No 184
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.37 E-value=0.1 Score=46.98 Aligned_cols=196 Identities=13% Similarity=0.060 Sum_probs=92.9
Q ss_pred eEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCC---CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCce
Q psy2979 151 GLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLK---FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEW 226 (400)
Q Consensus 151 ~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~---~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 226 (400)
+++...+..+++......+..+|..+++-....... ....-.+++.. +++.++.|+.++ .+..||..+++-
T Consensus 99 ~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg-----~v~iwd~~~~~~ 173 (357)
T 4g56_B 99 DVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF-----SVKVWDLSQKAV 173 (357)
T ss_dssp EEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTTEE
T ss_pred EEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCcE
Confidence 344444442554455567788887765432211111 11111122222 566777777653 588899888764
Q ss_pred EEccCCCCcccccEEEE-e-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE---CCeEEEEc
Q psy2979 227 SYIEPMKLAVTSPAVVA-H-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL---DSCIYVLG 301 (400)
Q Consensus 227 ~~~~~l~~~~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~G 301 (400)
...-....... .+++. . ++.+++.|+. ++ .+..||..+.+-...............+.. ++.+++.|
T Consensus 174 ~~~~~~h~~~v-~~v~~s~~~~~~~~s~~~---dg----~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g 245 (357)
T 4g56_B 174 LKSYNAHSSEV-NCVAACPGKDTIFLSCGE---DG----RILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245 (357)
T ss_dssp EEEECCCSSCE-EEEEECTTCSSCEEEEET---TS----CEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEE
T ss_pred EEEEcCCCCCE-EEEEEccCCCceeeeecc---CC----ceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEe
Confidence 33211111111 12222 2 3357777776 54 688899876653332222222222222332 45777777
Q ss_pred CcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCCCcEEE
Q psy2979 302 GWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 302 G~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
+. ...+..||..+.+-.. .+.........+.+ ++ ++.+.|+. + ..|.+||..+++...
T Consensus 246 ~~------d~~i~~wd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~~lasgs~-D-----~~i~iwd~~~~~~~~ 306 (357)
T 4g56_B 246 DE------TGNVSLVNIKNPDSAQ--TSAVHSQNITGLAYSYHSSPFLASISE-D-----CTVAVLDADFSEVFR 306 (357)
T ss_dssp ES------SSCEEEEESSCGGGCE--EECCCSSCEEEEEECSSSSCCEEEEET-T-----SCEEEECTTSCEEEE
T ss_pred ec------ccceeEEECCCCcEeE--EEeccceeEEEEEEcCCCCCEEEEEeC-C-----CEEEEEECCCCcEeE
Confidence 65 4578889987654211 11111111223333 33 56666665 2 358899988875443
No 185
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.37 E-value=0.44 Score=43.31 Aligned_cols=178 Identities=13% Similarity=0.037 Sum_probs=89.5
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEE-----ccCCCCccccc-EEEEe-CC-EEEEEcCccccCCCCcceEEEEe
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSY-----IEPMKLAVTSP-AVVAH-EG-MLYVTGGAILEDGDGIEQVQRYN 269 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~~~l~~~~~~~-~~~~~-~~-~iyv~GG~~~~~~~~~~~v~~yd 269 (400)
++.+++.|+.+ ..+..||..++.... +..+....... +++.. ++ .+++.|+. ++ .+..||
T Consensus 93 ~~~~l~s~s~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~---dg----~i~iwd 160 (402)
T 2aq5_A 93 NDNVIASGSED-----CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC---DN----VILVWD 160 (402)
T ss_dssp CTTEEEEEETT-----SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET---TS----CEEEEE
T ss_pred CCCEEEEEeCC-----CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC---CC----EEEEEE
Confidence 56677777755 458888988774321 11111111111 12222 33 57777776 44 689999
Q ss_pred CCCCceeeccC-CCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc-CCcCccCcceEE-EECCEE
Q psy2979 270 PKVNQWQDLAP-MLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKS-PMKEKRYRPGIA-VIDGKI 345 (400)
Q Consensus 270 ~~~~~W~~~~~-~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~-~~~~~l 345 (400)
..+.+....-. ......-.+++.. ++..++.|+. ...+..||+.+++-...- ..........++ .-++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (402)
T 2aq5_A 161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR------DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKI 234 (402)
T ss_dssp TTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET------TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEE
T ss_pred CCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec------CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcE
Confidence 88776443211 1111111222222 6677777765 568999999887644322 111111111222 227887
Q ss_pred EEEcCccCCCCCCCeEEEEECCCCcE-EEecCCCCCCCceeeEEEccccccc
Q psy2979 346 YVLGGEEGWDGYHDSIECYDVDNDSW-EIMSHLPSARSWLGCVPLQIHKSQF 396 (400)
Q Consensus 346 yv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~~~~~~~~ 396 (400)
++.|.. . .....|.+||..+..- .....+.....-..++.-.+..+++
T Consensus 235 l~~g~~-~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 235 LTTGFS-R--MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp EEEEEC-T--TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEE
T ss_pred EEEecc-C--CCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEE
Confidence 777721 0 1135789999877532 1111222333334444455555554
No 186
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.35 E-value=0.11 Score=51.47 Aligned_cols=211 Identities=12% Similarity=0.094 Sum_probs=115.1
Q ss_pred eEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCC----CCeEEcc--CCCCcceeeeEEE
Q psy2979 126 SVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMH----KILHSLG--SLKFDFDVSGIAM 196 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~----~~w~~~~--~~~~~r~~~~~~~ 196 (400)
.+..+++...+...+. +.....+++++. ++. ||+. .....++.+++.. ..-..+- .+..| .++++
T Consensus 387 ~I~~id~~~~~~~~~~--~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P---~glav 460 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAV 460 (699)
T ss_dssp C-CEECTTSCCEECCS--CCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--C---CCEEC
T ss_pred ceEEEeCCCCcceeee--ccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCc---ceEEE
Confidence 4556666665555432 222233455554 456 8887 3446788888865 1111111 11111 22332
Q ss_pred --ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC--CCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 197 --LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP--MKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 197 --~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~--l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
.++.||+.-. ....+.++++....-..+.. +..+ .++++ .++.||+..-. . ...|+++++
T Consensus 461 D~~~g~LY~tD~-----~~~~I~v~d~dg~~~~~l~~~~~~~P---~giavDp~~g~ly~td~~---~---~~~I~~~~~ 526 (699)
T 1n7d_A 461 DWIHSNIYWTDS-----VLGTVSVADTKGVKRKTLFREQGSKP---RAIVVDPVHGFMYWTDWG---T---PAKIKKGGL 526 (699)
T ss_dssp CCSSSBCEECCT-----TTSCEEEEBSSSCCEEEECCCSSCCC---CCEECCSSSSCCEECCCS---S---SCCEEBCCS
T ss_pred EeeCCcEEEEec-----cCCeEEEEecCCCceEEEEeCCCCCc---ceEEEccCCCcEEEcccC---C---CCeEEEEeC
Confidence 3678888632 23568899988765444422 2222 23333 36788887422 1 246888887
Q ss_pred CCCceeecc--CCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc-CccCcceEEEECCEE
Q psy2979 271 KVNQWQDLA--PMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK-EKRYRPGIAVIDGKI 345 (400)
Q Consensus 271 ~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~l 345 (400)
....-+.+. .+..| .+++.- ++.||+.... ...|+++|+....-..+...+ ......++++.++.|
T Consensus 527 dG~~~~~l~~~~l~~P---nGlavd~~~~~LY~aD~~------~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~l 597 (699)
T 1n7d_A 527 NGVDIYSLVTENIQWP---NGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKV 597 (699)
T ss_dssp SSCCCCEESCSSCSSC---CCEEECTTTCCEEEEETT------TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEE
T ss_pred CCCCeeEEEeCCCCCc---cEEEEeccCCEEEEEecC------CCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEE
Confidence 654433332 22222 233332 6799998754 578999998754434443222 222345667778999
Q ss_pred EEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 346 YVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 346 yv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
|+.-.. ...|.++|+.+++-
T Consensus 598 ywtd~~------~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 598 FWTDII------NEAIFSANRLTGSD 617 (699)
T ss_dssp EEECST------TTCEEEEETTTEEE
T ss_pred EEEeCC------CCeEEEEEccCCCc
Confidence 998643 35789999876643
No 187
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.34 E-value=0.37 Score=43.07 Aligned_cols=214 Identities=10% Similarity=-0.030 Sum_probs=102.4
Q ss_pred ceEEEEEcCCCceEEccC--C-cccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCc-ceeeeEEEE--
Q psy2979 125 RSVEGFCVKTKVWKTLSC--L-PFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD-FDVSGIAML-- 197 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~--~-~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~-r~~~~~~~~-- 197 (400)
..+.++|..+++-..... + .....-.+++.. ++..|........+..+|..+++-. ..+... ..-.+++..
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~--~~~~~h~~~V~~~~~~~~ 180 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL--SSYRAHAAQVTCVAASPH 180 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECSS
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE--EEEcCcCCceEEEEecCC
Confidence 467888887765221110 0 011111233333 3341332255567888898876532 222111 111122221
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc-EEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP-AVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~-~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
+..+++.|+.+ ..+..||..+.+-...-......... +++. .++++++.|+. ++ .+..||..+.+
T Consensus 181 ~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~---dg----~v~~wd~~~~~ 248 (344)
T 4gqb_B 181 KDSVFLSCSED-----NRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE---NG----TVSLVDTKSTS 248 (344)
T ss_dssp CTTEEEEEETT-----SCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET---TS----EEEEEESCC--
T ss_pred CCCceeeeccc-----cccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc---CC----cEEEEECCCCc
Confidence 33577777765 35888999877643321111111111 2222 25678888877 44 78899987653
Q ss_pred eeeccCCCCCceeeeEEEE--CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE---CCEEEEE
Q psy2979 275 WQDLAPMLIPRSGAAICAL--DS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVL 348 (400)
Q Consensus 275 W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~ 348 (400)
- +..+.........+.+ ++ .+++.|+. ...+..||..+++-..+.... ..-..+.+ +..+++.
T Consensus 249 ~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~------D~~i~vwd~~~~~~~~~~~H~---~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 249 C--VLSSAVHSQCVTGLVFSPHSVPFLASLSE------DCSLAVLDSSLSELFRSQAHR---DFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp C--CEEEECCSSCEEEEEECSSSSCCEEEEET------TSCEEEECTTCCEEEEECCCS---SCEEEEEECSSSTTEEEE
T ss_pred E--EEEEcCCCCCEEEEEEccCCCeEEEEEeC------CCeEEEEECCCCcEEEEcCCC---CCEEEEEEeCCCCeEEEE
Confidence 1 1111111111122222 34 56666665 457888999887654432211 11122333 3457777
Q ss_pred cCccCCCCCCCeEEEEECCCC
Q psy2979 349 GGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 349 GG~~~~~~~~~~v~~yd~~~~ 369 (400)
||. + ..|..++..++
T Consensus 318 ~s~-D-----~~v~~w~v~~~ 332 (344)
T 4gqb_B 318 VGW-D-----HQVVHHVVPTE 332 (344)
T ss_dssp EET-T-----SCEEEEECCC-
T ss_pred EcC-C-----CeEEEEECCCC
Confidence 776 3 35677776653
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=96.31 E-value=0.98 Score=44.75 Aligned_cols=235 Identities=8% Similarity=-0.044 Sum_probs=120.6
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee----------------cCEEEEEECCCCCeE--EccCC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI----------------VDIVYVAASMHKILH--SLGSL 185 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~----------------~~~~~~yd~~~~~w~--~~~~~ 185 (400)
..+.++|..+++..... ++... ..+++.. +++.|+.... ...++.++..++... .+-..
T Consensus 151 ~~i~v~d~~tg~~~~~~-~~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~ 228 (710)
T 2xdw_A 151 VTIKFMKVDGAKELPDV-LERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF 228 (710)
T ss_dssp EEEEEEETTTTEEEEEE-EEEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC
T ss_pred EEEEEEECCCCCCCccc-ccCcc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc
Confidence 37888898888766532 11111 1234444 4543554411 234888888776532 11111
Q ss_pred C-CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCC------C--ceEEccCCCCcccccEEEEeCCEEEEEcCcc
Q psy2979 186 K-FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTK------N--EWSYIEPMKLAVTSPAVVAHEGMLYVTGGAI 255 (400)
Q Consensus 186 ~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~------~--~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~ 255 (400)
+ .+....+.... +++..+++...+......++.+|..+ . .+..+..-..... .....-++.||+.+..
T Consensus 229 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~- 306 (710)
T 2xdw_A 229 PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNR- 306 (710)
T ss_dssp TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECT-
T ss_pred CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECC-
Confidence 1 12222232222 44433333322222246788899876 4 5777654322221 1233456788888654
Q ss_pred ccCCCCcceEEEEeCCCC---ceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCe-EEEccCCc
Q psy2979 256 LEDGDGIEQVQRYNPKVN---QWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENT-WEYKSPMK 330 (400)
Q Consensus 256 ~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~ 330 (400)
++. ...++.+|..+. .|+.+.+-........+... ++.+++....++ ...++.+|+.+++ ...+. .+
T Consensus 307 --~~~-~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g----~~~l~~~~~~~g~~~~~l~-~~ 378 (710)
T 2xdw_A 307 --HSP-NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV----KNTLQLHDLATGALLKIFP-LE 378 (710)
T ss_dssp --TCT-TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT----EEEEEEEETTTCCEEEEEC-CC
T ss_pred --CCC-CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC----EEEEEEEECCCCCEEEecC-CC
Confidence 321 357899998765 48877543322223334445 677777765432 4579999986554 44443 22
Q ss_pred CccCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCCCc--EEEecC
Q psy2979 331 EKRYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDNDS--WEIMSH 376 (400)
Q Consensus 331 ~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~ 376 (400)
. ........ ++ .+++.... ...-..++.||..+++ ++.+..
T Consensus 379 ~--~~v~~~~~s~d~~~l~~~~ss---~~~P~~i~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 379 V--GSVVGYSGQKKDTEIFYQFTS---FLSPGIIYHCDLTKEELEPRVFRE 424 (710)
T ss_dssp S--SEEEEEECCTTCSEEEEEEEC---SSCCCEEEEEETTSSSCCCEEEEE
T ss_pred C--ceEEEEecCCCCCEEEEEEeC---CCCCCEEEEEECCCCccceEEeee
Confidence 1 11111222 33 45444221 1234689999998877 665543
No 189
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.31 E-value=0.63 Score=46.69 Aligned_cols=187 Identities=11% Similarity=0.003 Sum_probs=91.2
Q ss_pred EEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCC-Ccc
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLK-FDF 189 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~-~~r 189 (400)
.+++|+.+ ..+.+||..+++....-.. ....-.+++.. ++..+........+..||..++ |.....+. ...
T Consensus 69 ~l~~~~~d-----g~i~vw~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~ 141 (814)
T 3mkq_A 69 WIIVGSDD-----FRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-WALEQTFEGHEH 141 (814)
T ss_dssp EEEEEETT-----SEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT-SEEEEEEECCSS
T ss_pred EEEEEeCC-----CeEEEEECCCCcEEEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC-ceEEEEEcCCCC
Confidence 34555543 4788899888765432111 11111223333 3331333344567888887765 22222111 111
Q ss_pred eeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe---CCEEEEEcCccccCCCCcce
Q psy2979 190 DVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH---EGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 190 ~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~ 264 (400)
.-.+++.. ++..++.|+.+ ..+..||..+.+-...........-..++.. ++..+++|+. ++ .
T Consensus 142 ~v~~~~~~p~~~~~l~~~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg----~ 209 (814)
T 3mkq_A 142 FVMCVAFNPKDPSTFASGCLD-----RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD---DL----T 209 (814)
T ss_dssp CEEEEEEETTEEEEEEEEETT-----SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT---TS----E
T ss_pred cEEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC---CC----E
Confidence 12222222 45677777755 3588888866542211111111112222222 6777788877 43 7
Q ss_pred EEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 265 VQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 265 v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+..||..+.+-...-.............-++.+++.|+. ...+..||+.+.+-
T Consensus 210 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE------DGTLKIWNSSTYKV 262 (814)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET------TSCEEEEETTTCSE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCcE
Confidence 899998766532211111111111112225667777765 45688888877653
No 190
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.29 E-value=0.97 Score=44.51 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=72.1
Q ss_pred EEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCc--------ceeeeEEEECCEEEEEcccCCCCCCCeEEEEeC
Q psy2979 152 LVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFD--------FDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDP 221 (400)
Q Consensus 152 ~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 221 (400)
-++.++. +|+......++.+|..+++ |+.-...+.. ....+.+..+++||+... ...+..+|.
T Consensus 62 P~v~~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l~alD~ 134 (668)
T 1kv9_A 62 PLFHDGV-IYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------DGRLIALDA 134 (668)
T ss_dssp CEEETTE-EEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------TSEEEEEET
T ss_pred CEEECCE-EEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC------CCEEEEEEC
Confidence 3566888 9998777789999998776 8765433211 012234556889988542 246899999
Q ss_pred CCCc--eEEccCCCC--cccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCc--eeec
Q psy2979 222 TKNE--WSYIEPMKL--AVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQ--WQDL 278 (400)
Q Consensus 222 ~~~~--W~~~~~l~~--~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~--W~~~ 278 (400)
.+++ |+.-..-+. .....+.++.++.+|+..+. .... ...++.||+.+.+ |+.-
T Consensus 135 ~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~---~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 135 KTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGG---AEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp TTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBC---TTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCC---CCcCCCCEEEEEECCCCcEEEEec
Confidence 8874 876432111 11222335678888875332 1111 3479999998765 8753
No 191
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=96.24 E-value=0.0014 Score=51.89 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=22.9
Q ss_pred eEEEE-CCeEEehhhHHHhhcCcccccc-------ceeecCCCCHHHHHHHh
Q psy2979 20 VTLCV-DGSKFPAHRVVLAASSPYFKVL-------ETIRLPQLSPYFLHDCV 63 (400)
Q Consensus 20 v~l~~-~~~~~~~hr~vLaa~s~yf~~m-------~~vrl~~l~~~~l~~~i 63 (400)
|+|.. ||+.|.+||.| |.+|+||+.| ..|.|+.++...|...+
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVi 56 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVI 56 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC------------CCTTSCHHHHHHHH
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHH
Confidence 66665 89999999999 8999999998 35889999998655433
No 192
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.24 E-value=1 Score=45.10 Aligned_cols=182 Identities=10% Similarity=0.149 Sum_probs=100.0
Q ss_pred CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEcc----C
Q psy2979 156 GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE----P 231 (400)
Q Consensus 156 ~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~----~ 231 (400)
++. |++.. ..-+.+||+.+.++...... .+..-.++..-++.||+... ..+.+||+.+++++... .
T Consensus 73 ~g~-lWigT-~~Gl~~yd~~~~~f~~~~~~-~~~~i~~i~~~~g~lWigt~-------~Gl~~~~~~~~~~~~~~~~~~~ 142 (758)
T 3ott_A 73 NTY-LYMGT-DNGILVYNYRADRYEQPETD-FPTDVRTMALQGDTLWLGAL-------NGLYTYQLQSRKLTSFDTRRNG 142 (758)
T ss_dssp TTE-EEEEE-TTEEEEEETTTTEECCCSCC-CCSCEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEECHHHHC
T ss_pred CCc-EEEEe-CCCeEEEeCCCCEEECcccC-CCceEEEEEecCCcEEEEcC-------CcceeEeCCCCeEEEeccCCCC
Confidence 455 77763 46789999999877652111 11111223335788888532 25889999999887662 2
Q ss_pred CCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCC----CceeeeEEEE-C-CeEEEEcCcC
Q psy2979 232 MKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI----PRSGAAICAL-D-SCIYVLGGWH 304 (400)
Q Consensus 232 l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~----~r~~~~~~~~-~-~~iyv~GG~~ 304 (400)
++.... .+++. -++.|++... ..+.+||+.+.+++....... ...-.++..- + +.|++..
T Consensus 143 l~~~~i-~~i~~d~~g~lWigt~---------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt--- 209 (758)
T 3ott_A 143 LPNNTI-YSIIRTKDNQIYVGTY---------NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT--- 209 (758)
T ss_dssp CSCSCE-EEEEECTTCCEEEEET---------TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE---
T ss_pred cCCCeE-EEEEEcCCCCEEEEeC---------CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE---
Confidence 332211 12222 2678887421 268999999988876532111 1111223333 2 3467632
Q ss_pred CCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 305 ASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 305 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
..-+.+||+.++++.....++... ..+++.- +|.|+|.- . ..+.+||+.+++++..
T Consensus 210 -----~~Gl~~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWigT-~-------~Gl~~~~~~~~~~~~~ 266 (758)
T 3ott_A 210 -----EGYLFQYFPSTGQIKQTEAFHNNS-IKSLALDGNGDLLAGT-D-------NGLYVYHNDTTPLQHI 266 (758)
T ss_dssp -----EEEEEEEETTTTEEEEEEEEEEEE-EEEEEECTTCCEEEEE-T-------TEEEEECCTTSCCEEE
T ss_pred -----CCCCeEEcCCCCeEEeccCCCCCe-EEEEEEcCCCCEEEEe-C-------CceeEEecCCCcEEEE
Confidence 235889999999887654332111 1111111 56677643 1 2466777776666544
No 193
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=96.24 E-value=0.88 Score=43.57 Aligned_cols=227 Identities=9% Similarity=-0.042 Sum_probs=114.2
Q ss_pred ceEEEEEc--CCCceEEccCCcccceeeeEEEE-----CCeEEEEEe-ecCEEEEEECCCCCeEEccCC-----------
Q psy2979 125 RSVEGFCV--KTKVWKTLSCLPFAISKHGLVVS-----GRNTIYCLD-IVDIVYVAASMHKILHSLGSL----------- 185 (400)
Q Consensus 125 ~~~~~yd~--~~~~w~~~~~~~~~~~~~~~~~~-----~~~~iyv~~-~~~~~~~yd~~~~~w~~~~~~----------- 185 (400)
..+..||. .+.+- +..++....-..+++. +++.+|+.. ..+.+..+|..+.+-...-+.
T Consensus 200 ~~V~v~D~~~~t~~~--~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~ 277 (543)
T 1nir_A 200 ARIDMIDLWAKEPTK--VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH 277 (543)
T ss_dssp SEEEEEETTSSSCEE--EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred CeEEEEECcCCCCcE--EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc
Confidence 67888998 55442 2233333333445554 455477774 467888999877654322111
Q ss_pred CCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCE-EEEEcCccccCCCCc
Q psy2979 186 KFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGM-LYVTGGAILEDGDGI 262 (400)
Q Consensus 186 ~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~-iyv~GG~~~~~~~~~ 262 (400)
+.+|....+..- ++.+|+.... ...+..+|..+.+-..+..++....-+..+. -+++ +|+.+.. .
T Consensus 278 ~~~~v~~i~~s~~~~~~~vs~~~-----~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~-------~ 345 (543)
T 1nir_A 278 PEPRVAAIIASHEHPEFIVNVKE-----TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN-------S 345 (543)
T ss_dssp SCCCEEEEEECSSSSEEEEEETT-----TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG-------G
T ss_pred cCCceEEEEECCCCCEEEEEECC-----CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC-------C
Confidence 111222222222 3455554332 2568888887653211111222222233332 3444 6665544 3
Q ss_pred ceEEEEeCCCCceeec---cCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCC-----eEEEccCCcCcc
Q psy2979 263 EQVQRYNPKVNQWQDL---APMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAEN-----TWEYKSPMKEKR 333 (400)
Q Consensus 263 ~~v~~yd~~~~~W~~~---~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~-----~W~~~~~~~~~~ 333 (400)
+.+..+|..+.+-... ...|.+..+.....- ++.+|+.+... ..+|..+|..+. .|+.+..++...
T Consensus 346 ~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~-----d~~V~v~d~~~~~~~~~~~~~v~~l~~~g 420 (543)
T 1nir_A 346 NKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG-----DGSISLIGTDPKNHPQYAWKKVAELQGQG 420 (543)
T ss_dssp TEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSS-----SSEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred CeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCC-----CceEEEEEeCCCCCchhcCeEEEEEEcCC
Confidence 5788999988865432 223333222222222 36788876421 357888887662 377666555432
Q ss_pred Cc-ceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 334 YR-PGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 334 ~~-~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.. ..+... +..||+-.-..........|.+||..+.+
T Consensus 421 ~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 421 GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 22 122222 34566643110100124589999998765
No 194
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.23 E-value=0.48 Score=43.42 Aligned_cols=138 Identities=13% Similarity=0.039 Sum_probs=70.7
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV 242 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~ 242 (400)
.....+..+|..+++....-.. ....-.+++. -++.+++.||.++ ++..||..+.+- +..+......-..+
T Consensus 127 s~Dg~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs~D~-----~i~iwd~~~~~~--~~~~~~h~~~V~~v 198 (410)
T 1vyh_C 127 SEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCSADM-----TIKLWDFQGFEC--IRTMHGHDHNVSSV 198 (410)
T ss_dssp ESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEETTS-----CCCEEETTSSCE--EECCCCCSSCEEEE
T ss_pred eCCCeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCce--eEEEcCCCCCEEEE
Confidence 4445678888877653221110 1111112222 2566777787663 467788776543 22222111111222
Q ss_pred Ee--CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 243 AH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 243 ~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
.+ ++..++.|+. ++ .+..||..+..-... +.........+.. ++.+++.|+. ...+..||.
T Consensus 199 ~~~p~~~~l~s~s~---D~----~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~s~------D~~v~vwd~ 263 (410)
T 1vyh_C 199 SIMPNGDHIVSASR---DK----TIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTLIASCSN------DQTVRVWVV 263 (410)
T ss_dssp EECSSSSEEEEEET---TS----EEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEEEET------TSCEEEEET
T ss_pred EEeCCCCEEEEEeC---CC----eEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCEEEEEcC------CCeEEEEEC
Confidence 22 5667777777 44 789999877653221 1111111112222 6677777776 457888888
Q ss_pred CCCeEE
Q psy2979 319 AENTWE 324 (400)
Q Consensus 319 ~~~~W~ 324 (400)
.+....
T Consensus 264 ~~~~~~ 269 (410)
T 1vyh_C 264 ATKECK 269 (410)
T ss_dssp TTCCEE
T ss_pred CCCcee
Confidence 776543
No 195
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.22 E-value=0.46 Score=41.21 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=73.8
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe--C--CEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH--E--GMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
+.+++.|+.+ .++..||..+++|..+..+.........+.. + +.+++.|+. ++ .+..||..+..
T Consensus 67 g~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~---d~----~v~~wd~~~~~ 134 (297)
T 2pm7_B 67 GTILASCSYD-----GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS---DG----KVSVVEFKENG 134 (297)
T ss_dssp CSEEEEEETT-----TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET---TS----EEEEEEBCSSS
T ss_pred CCEEEEEcCC-----CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC---CC----cEEEEEecCCC
Confidence 5667777765 4688899888877544322211111122222 2 567777776 44 68888876542
Q ss_pred -eeeccCCCCCceeeeEEEE--------------CCeEEEEcCcCCCCCCCCeEEEEECCC--CeEEEccCCcCccCcce
Q psy2979 275 -WQDLAPMLIPRSGAAICAL--------------DSCIYVLGGWHASTENTNRVECYHIAE--NTWEYKSPMKEKRYRPG 337 (400)
Q Consensus 275 -W~~~~~~~~~r~~~~~~~~--------------~~~iyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~~~~~~ 337 (400)
+...........-.++... ++++++.|+. ...+..||..+ ..|.....+......-.
T Consensus 135 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~------D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~ 208 (297)
T 2pm7_B 135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA------DNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (297)
T ss_dssp CBCCEEEECCSSCEEEEEECCCC------------CCEEEEEET------TSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred ceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcC------CCcEEEEEEcCCCceEEEEEEecCCCCceE
Confidence 2110000000000011111 2457777776 34566666544 34554443332222222
Q ss_pred EEEE--C---CEEEEEcCccCCCCCCCeEEEEECCC--CcEEE
Q psy2979 338 IAVI--D---GKIYVLGGEEGWDGYHDSIECYDVDN--DSWEI 373 (400)
Q Consensus 338 ~~~~--~---~~lyv~GG~~~~~~~~~~v~~yd~~~--~~W~~ 373 (400)
.+.. + +++++.|+. + ..|.+||+.+ ..|..
T Consensus 209 ~v~~sp~~~~~~~las~s~-D-----~~v~iWd~~~~~~~~~~ 245 (297)
T 2pm7_B 209 DVAWSPTVLLRSYMASVSQ-D-----RTCIIWTQDNEQGPWKK 245 (297)
T ss_dssp EEEECCCCSSSEEEEEEET-T-----SCEEEEEESSTTSCCEE
T ss_pred EEEECCCCCCceEEEEEEC-C-----CcEEEEEeCCCCCccce
Confidence 3333 2 367777776 3 3567777665 34543
No 196
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.34 Score=44.04 Aligned_cols=224 Identities=8% Similarity=0.006 Sum_probs=107.6
Q ss_pred cceEEEEEcCCCceE-EccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCC--CeEEccCCCCc-ceeeeEEEE
Q psy2979 124 LRSVEGFCVKTKVWK-TLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHK--ILHSLGSLKFD-FDVSGIAML 197 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~-~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~--~w~~~~~~~~~-r~~~~~~~~ 197 (400)
...+.+||..++.-. .+..+.....-.+++.. ++. +++. .....+..||..+. ....+..+... ..-.+++..
T Consensus 44 d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 122 (416)
T 2pm9_A 44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNK-IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN 122 (416)
T ss_dssp CCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSS-CEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC
T ss_pred CCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCC-eEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEc
Confidence 346788887765422 12222222222334433 333 3333 44457888887761 11122222111 111122222
Q ss_pred -C-CEEEEEcccCCCCCCCeEEEEeCCCCc------eEE-ccCCC-CcccccEEEEe-C-CEEEEEcCccccCCCCcceE
Q psy2979 198 -D-GFVYAVGGWDGSCRLDSVERYDPTKNE------WSY-IEPMK-LAVTSPAVVAH-E-GMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 198 -~-~~iyv~GG~~~~~~~~~v~~yd~~~~~------W~~-~~~l~-~~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~v 265 (400)
+ +.+++.|+.+ ..+..||..+.+ -.. +.... ....-.+++.. + +.+++.|+. ++ .+
T Consensus 123 ~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg----~v 190 (416)
T 2pm9_A 123 AKQDNVLASGGNN-----GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS---SN----FA 190 (416)
T ss_dssp SSSTTBEEEECSS-----SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS---SS----CE
T ss_pred CCCCCEEEEEcCC-----CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC---CC----CE
Confidence 2 5677777755 358888888765 111 11111 11111223332 3 578888887 44 68
Q ss_pred EEEeCCCCceeeccCCCC-----CceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc-CccCcce
Q psy2979 266 QRYNPKVNQWQDLAPMLI-----PRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK-EKRYRPG 337 (400)
Q Consensus 266 ~~yd~~~~~W~~~~~~~~-----~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~ 337 (400)
..||..+.+-...-.... .....+++.. ++ .+++.|+.++. ...+..||..+..- .+..+. .......
T Consensus 191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~~~~~~-~~~~~~~~~~~~v~ 266 (416)
T 2pm9_A 191 SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDLRNANT-PLQTLNQGHQKGIL 266 (416)
T ss_dssp EEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEETTSTTS-CSBCCCSCCSSCEE
T ss_pred EEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeCCCCCC-CcEEeecCccCcee
Confidence 999998776443322221 1112222222 33 57777765321 12688888876431 111121 1111222
Q ss_pred EEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 338 IAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 338 ~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+.+ ++++++.|+. + ..|.+||..+.+
T Consensus 267 ~~~~s~~~~~~l~s~~~-d-----g~v~~wd~~~~~ 296 (416)
T 2pm9_A 267 SLDWCHQDEHLLLSSGR-D-----NTVLLWNPESAE 296 (416)
T ss_dssp EEEECSSCSSCEEEEES-S-----SEEEEECSSSCC
T ss_pred EEEeCCCCCCeEEEEeC-C-----CCEEEeeCCCCc
Confidence 3333 5677777776 2 468899988764
No 197
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=96.17 E-value=0.0041 Score=56.76 Aligned_cols=182 Identities=9% Similarity=0.050 Sum_probs=76.5
Q ss_pred EECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCC--ceEEc
Q psy2979 154 VSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKN--EWSYI 229 (400)
Q Consensus 154 ~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~ 229 (400)
+.++. +|+......++.+|..+++ |+.... . ...+.+..++.+|+.++.+ ..+..+|..++ .|..-
T Consensus 7 v~~~~-v~~gs~dg~v~a~d~~tG~~~W~~~~~--~--~~s~p~~~~g~~~v~~s~d-----g~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 7 LPETL-LFVSTLDGSLHAVSKRTGSIKWTLKED--P--VLQVPTHVEEPAFLPDPND-----GSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp -CTTE-EEEEETTSEEEEEETTTCCEEEEEECC--C--SCCCC-----CCEEECTTT-----CCEEEC-----CCSEECS
T ss_pred eeCCE-EEEEcCCCEEEEEECCCCCEEEEecCC--C--ceecceEcCCCEEEEeCCC-----CEEEEEECCCCceeeeee
Confidence 33455 7777666788999988775 765331 1 1112233466788876543 35888998765 46532
Q ss_pred cCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCCCceeeeEEEECCeEEEEcCcCCC
Q psy2979 230 EPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIPRSGAAICALDSCIYVLGGWHAS 306 (400)
Q Consensus 230 ~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~ 306 (400)
...+... ..+.+. .++.+|+ |+. ...++.+|+.+.+ |+.-.... .+ .+..++.+|+. +.
T Consensus 77 ~~~~~~~-~~sp~~~~~~~v~~-g~~-------dg~v~a~D~~tG~~~w~~~~~~~-~~----~~p~~~~v~~~-~~--- 138 (369)
T 2hz6_A 77 FTIPELV-QASPCRSSDGILYM-GKK-------QDIWYVIDLLTGEKQQTLSSAFA-DS----LSPSTSLLYLG-RT--- 138 (369)
T ss_dssp CCHHHHH-TTCSCC-----CCC-CEE-------EEEEEEECCC---------------------------EEEE-EE---
T ss_pred ccCcccc-ccCceEecCCEEEE-EeC-------CCEEEEEECCCCcEEEEecCCCc-cc----ccccCCEEEEE-ec---
Confidence 2211111 111122 3555554 433 2368899987654 66432211 01 11134555543 32
Q ss_pred CCCCCeEEEEECCCCe--EEEcc-CCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc--EEEe
Q psy2979 307 TENTNRVECYHIAENT--WEYKS-PMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEIM 374 (400)
Q Consensus 307 ~~~~~~v~~yd~~~~~--W~~~~-~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~ 374 (400)
...+..+|+.+++ |+.-. ....+... .-...++.+|+.... ..++++|+.+++ |+.-
T Consensus 139 ---dg~v~a~d~~tG~~~W~~~~~~~~~~~~~-~~~~~~~~v~~~~~d-------g~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 139 ---EYTITMYDTKTRELRWNATYFDYAASLPE-DDVDYKMSHFVSNGD-------GLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp ---EEEEECCCSSSSSCCCEEEEEEECCBCCC-CCTTCCCCEEEEETS-------CEEEEECTTTCCEEEEEE
T ss_pred ---CCEEEEEECCCCCEEEeEecccccCcccc-CCccccceEEEECCC-------CEEEEEECCCCcEEEEec
Confidence 3578888987664 76421 10000000 000123566664321 368888887764 7653
No 198
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.16 E-value=0.75 Score=41.89 Aligned_cols=229 Identities=13% Similarity=0.129 Sum_probs=124.5
Q ss_pred EEEEEcCC--CceEEccCCcccceeeeEEEE---CCeEEEEEeecC----EEEEEECCCCCeEEccCC---CCc--c---
Q psy2979 127 VEGFCVKT--KVWKTLSCLPFAISKHGLVVS---GRNTIYCLDIVD----IVYVAASMHKILHSLGSL---KFD--F--- 189 (400)
Q Consensus 127 ~~~yd~~~--~~w~~~~~~~~~~~~~~~~~~---~~~~iyv~~~~~----~~~~yd~~~~~w~~~~~~---~~~--r--- 189 (400)
+..++... ..|..+........-++++.- ++. ||+..... .+++.+....+|+.+... +.. +
T Consensus 33 l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~-l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~ 111 (394)
T 3b7f_A 33 AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPER-MLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETG 111 (394)
T ss_dssp EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTC-EEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----C
T ss_pred eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCe-EEEEecCCCCCccEEEeCCCCCCceECCccccCCCccccccc
Confidence 55666544 589876421222233445544 355 88874433 688887778899987642 111 1
Q ss_pred ----eeeeEEEE----CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCC---CC--------------cccccEEEEe
Q psy2979 190 ----DVSGIAML----DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM---KL--------------AVTSPAVVAH 244 (400)
Q Consensus 190 ----~~~~~~~~----~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l---~~--------------~~~~~~~~~~ 244 (400)
.-.+++.. .+.||+.+. ...+++.+....+|+.+..+ |. ....++++..
T Consensus 112 ~~~~~i~~l~~~~~~~~~~l~~g~~------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d 185 (394)
T 3b7f_A 112 RVVDHVFWLTPGHASEPGTWYAGTS------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVD 185 (394)
T ss_dssp CCCCEEEEEEECCTTSTTCEEEEEE------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEEC
T ss_pred ccccceeEEEeCCCCCCCEEEEEec------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEEC
Confidence 11223332 467777542 13488888888899987532 21 1111233332
Q ss_pred ---CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC-C-----CC-----CceeeeEEEEC---CeEEEEcCcCCCC
Q psy2979 245 ---EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP-M-----LI-----PRSGAAICALD---SCIYVLGGWHAST 307 (400)
Q Consensus 245 ---~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~-~-----~~-----~r~~~~~~~~~---~~iyv~GG~~~~~ 307 (400)
.+.||+.... ..+++.+....+|+.+.. + |. ....+.++... +.||+..
T Consensus 186 ~~~~~~l~vg~~~--------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~------ 251 (394)
T 3b7f_A 186 PRDPKHLYIGMSS--------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN------ 251 (394)
T ss_dssp TTCTTCEEEEEET--------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE------
T ss_pred CCCCCEEEEEECC--------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc------
Confidence 3568876433 258888888899998853 1 21 12234444432 5677743
Q ss_pred CCCCeEEEEECCCCeEEEccC-CcCc--cCcceEEEE---CCEEEEEcCccCCC-------CCCCeEEEEECCCCcEEEe
Q psy2979 308 ENTNRVECYHIAENTWEYKSP-MKEK--RYRPGIAVI---DGKIYVLGGEEGWD-------GYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 308 ~~~~~v~~yd~~~~~W~~~~~-~~~~--~~~~~~~~~---~~~lyv~GG~~~~~-------~~~~~v~~yd~~~~~W~~~ 374 (400)
...+++.+-...+|+.+.. +|.. .....++.. .+.||+.... ... .....+++-.-...+|+.+
T Consensus 252 --~~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~-~~~~w~~~~~~~~~~~~~S~DgG~tW~~~ 328 (394)
T 3b7f_A 252 --HCGIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMD-GSDVWPRVSPGGKPAVYVTRDAGESWQRQ 328 (394)
T ss_dssp --TTEEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECB-CCSSTTCCBCCSSCCEEEESSTTSCCEEE
T ss_pred --CCeEEEeCCCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEecc-CCccceeecCCCceeEEEECCCCCCceEC
Confidence 3468889888999999864 4432 222222221 3678886421 100 1112344433334689988
Q ss_pred c-CCCC
Q psy2979 375 S-HLPS 379 (400)
Q Consensus 375 ~-~~~~ 379 (400)
. .+|.
T Consensus 329 ~~glp~ 334 (394)
T 3b7f_A 329 DRGLPT 334 (394)
T ss_dssp CBTSCC
T ss_pred CCCCCC
Confidence 5 3554
No 199
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.13 E-value=0.38 Score=43.31 Aligned_cols=177 Identities=8% Similarity=-0.069 Sum_probs=93.5
Q ss_pred eecCEEEEEECCCCCeEEccCC-CCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc-c
Q psy2979 164 DIVDIVYVAASMHKILHSLGSL-KFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS-P 239 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~-~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~-~ 239 (400)
.....+..||..+.+....-.. .....-.+++.. ++.+++.|+.+ ..+..||..++....+......... .
T Consensus 93 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~ 167 (383)
T 3ei3_B 93 SKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-----GATTLRDFSGSVIQVFAKTDSWDYWYC 167 (383)
T ss_dssp EBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-----TEEEEEETTSCEEEEEECCCCSSCCEE
T ss_pred cCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-----CEEEEEECCCCceEEEeccCCCCCCeE
Confidence 3345677788887766544332 122222233333 34666767654 4688899988766655433211111 1
Q ss_pred EEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCe-EEEEcCcCCCCCCCCeEEEE
Q psy2979 240 AVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSC-IYVLGGWHASTENTNRVECY 316 (400)
Q Consensus 240 ~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~y 316 (400)
+++ .-++..++.|+. + ..+..||.....-..+..-.. .-.+++.. ++. +++.|+. ...+..|
T Consensus 168 ~~~~~~~~~~l~~~~~---d----~~i~i~d~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~~~------d~~i~iw 232 (383)
T 3ei3_B 168 CVDVSVSRQMLATGDS---T----GRLLLLGLDGHEIFKEKLHKA--KVTHAEFNPRCDWLMATSSV------DATVKLW 232 (383)
T ss_dssp EEEEETTTTEEEEEET---T----SEEEEEETTSCEEEEEECSSS--CEEEEEECSSCTTEEEEEET------TSEEEEE
T ss_pred EEEECCCCCEEEEECC---C----CCEEEEECCCCEEEEeccCCC--cEEEEEECCCCCCEEEEEeC------CCEEEEE
Confidence 222 235677777776 4 378999985444333322111 11122222 444 7777766 4578999
Q ss_pred ECCC----CeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 317 HIAE----NTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 317 d~~~----~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
|..+ ......... ......+.+ +++.++.|+. + ..|.+||..+.
T Consensus 233 d~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~~l~~~~~-d-----~~i~iwd~~~~ 283 (383)
T 3ei3_B 233 DLRNIKDKNSYIAEMPH---EKPVNAAYFNPTDSTKLLTTDQ-R-----NEIRVYSSYDW 283 (383)
T ss_dssp EGGGCCSTTCEEEEEEC---SSCEEEEEECTTTSCEEEEEES-S-----SEEEEEETTBT
T ss_pred eCCCCCcccceEEEecC---CCceEEEEEcCCCCCEEEEEcC-C-----CcEEEEECCCC
Confidence 9876 333222111 111122233 5566777765 2 46888887654
No 200
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=96.08 E-value=0.65 Score=40.51 Aligned_cols=186 Identities=13% Similarity=0.105 Sum_probs=85.4
Q ss_pred EEEEEeccCCCcccceEEEEEcCCC--ceEEccCCcccc-eeeeEEEEC---CeEEEEE-eecCEEEEEECCCC------
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTK--VWKTLSCLPFAI-SKHGLVVSG---RNTIYCL-DIVDIVYVAASMHK------ 177 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~--~w~~~~~~~~~~-~~~~~~~~~---~~~iyv~-~~~~~~~~yd~~~~------ 177 (400)
..++.|+.+ ..+.+||..++ .+..+..+.... .-.+++... +. +++. .....+..+|..++
T Consensus 24 ~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~ 97 (351)
T 3f3f_A 24 RHVATCSSD-----QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR-IIASASYDKTVKLWEEDPDQEECSG 97 (351)
T ss_dssp SEEEEEETT-----SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS-EEEEEETTSCEEEEEECTTSCTTSS
T ss_pred CEEEEeeCC-----CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC-EEEEEcCCCeEEEEecCCCcccccc
Confidence 345566544 46777877643 333322222111 122333332 44 3333 44556777887654
Q ss_pred -CeEEccCCCCcce-eeeEEEE-C--CEEEEEcccCCCCCCCeEEEEeCCCCc----eEEc---cCC---CCcc-cccEE
Q psy2979 178 -ILHSLGSLKFDFD-VSGIAML-D--GFVYAVGGWDGSCRLDSVERYDPTKNE----WSYI---EPM---KLAV-TSPAV 241 (400)
Q Consensus 178 -~w~~~~~~~~~r~-~~~~~~~-~--~~iyv~GG~~~~~~~~~v~~yd~~~~~----W~~~---~~l---~~~~-~~~~~ 241 (400)
.|..+..+..... -.+++.. + +..++.|+.+ ..+..||..+.+ |... ..+ +... .....
T Consensus 98 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (351)
T 3f3f_A 98 RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND-----GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFC 172 (351)
T ss_dssp CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEE
T ss_pred cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC-----CcEEEecCCChHHhccccccccccccccccCCcccceeE
Confidence 2333333222111 1122222 3 5666667654 358888877653 2211 111 1111 11111
Q ss_pred EEe-----CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCcee-eeEEEE-CC----eEEEEcCcCCCCCCC
Q psy2979 242 VAH-----EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSG-AAICAL-DS----CIYVLGGWHASTENT 310 (400)
Q Consensus 242 ~~~-----~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~----~iyv~GG~~~~~~~~ 310 (400)
... ++..+++|+. + ..+..++........+..+...... .+++.. ++ .+++.|+. .
T Consensus 173 ~~~~p~~~~~~~l~~~~~---~----~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~------d 239 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSAL---E----QAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK------D 239 (351)
T ss_dssp EEECCCSSSCCEEEEEET---T----EEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET------T
T ss_pred EEeccCCCCCcEEEEecC---C----CcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC------C
Confidence 111 3667777766 3 2455556666665444444322222 222222 33 67777775 3
Q ss_pred CeEEEEECCC
Q psy2979 311 NRVECYHIAE 320 (400)
Q Consensus 311 ~~v~~yd~~~ 320 (400)
..+..||..+
T Consensus 240 g~i~iwd~~~ 249 (351)
T 3f3f_A 240 GRIRIFKITE 249 (351)
T ss_dssp SCEEEEEEEE
T ss_pred CeEEEEeCCC
Confidence 4566776654
No 201
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.73 Score=40.84 Aligned_cols=235 Identities=10% Similarity=-0.008 Sum_probs=113.3
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEE-c--cCCcccce--eeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKT-L--SCLPFAIS--KHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGS 184 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~-~--~~~~~~~~--~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~ 184 (400)
+.+++.|+.+ ..+..+|..+++-.. + ........ ....+..++. +.+......+..||..+.+-...-.
T Consensus 48 ~~~l~sg~~D-----g~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~-i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 48 KWVCMCRCED-----GALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNR-LLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEEET-----TEEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTE-EEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCC-----CcEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCe-EEEEEccCceEEeecCCcceeEEee
Confidence 5667777766 467788877665321 1 11110000 0122222444 6666666677778877765222111
Q ss_pred CCCcceeeeEEE-E--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCC
Q psy2979 185 LKFDFDVSGIAM-L--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGD 260 (400)
Q Consensus 185 ~~~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~ 260 (400)
......-.+++. - ++..++.|+.+ ..+..||..+++-...........-.+++. -++.+++.|+. ++
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~---dg- 192 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNR-----GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP---DG- 192 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETT-----CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT---TS-
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCC-----CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC---CC-
Confidence 111111111111 1 45667777765 358889998887644332222212223332 36788888887 54
Q ss_pred CcceEEEEeCCCCcee--eccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEE-EccCCcCccCcc
Q psy2979 261 GIEQVQRYNPKVNQWQ--DLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWE-YKSPMKEKRYRP 336 (400)
Q Consensus 261 ~~~~v~~yd~~~~~W~--~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~ 336 (400)
.+..||..+.+-. .+.. .....-.++... ++..++.|+. ..+..||..+.+-. .+..+.......
T Consensus 193 ---~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~~-------~~v~iwd~~~~~~~~~~~~~~~~~~~~ 261 (343)
T 3lrv_A 193 ---ILDVYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVECD-------QTVVCFDLRKDVGTLAYPTYTIPEFKT 261 (343)
T ss_dssp ---CEEEEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEES-------SBEEEEETTSSTTCBSSCCCBC-----
T ss_pred ---EEEEEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEeC-------CeEEEEEcCCCCcceeecccccccccc
Confidence 6899998876532 2211 011111122222 5666666652 37889998775421 111111010111
Q ss_pred --eEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEE
Q psy2979 337 --GIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 337 --~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
.++.+ +++.++.|+. +.. .-.+|.|+.....|..
T Consensus 262 ~~~~~~~~~~g~~l~~~s~-~d~--~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 262 GTVTYDIDDSGKNMIAYSN-ESN--SLTIYKFDKKTKNWTK 299 (343)
T ss_dssp CCEEEEECTTSSEEEEEET-TTT--EEEEEEECTTTCSEEE
T ss_pred cceEEEECCCCCEEEEecC-CCC--cEEEEEEcccccceEe
Confidence 12334 4665555332 111 1344445556678997
No 202
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.03 E-value=0.79 Score=41.05 Aligned_cols=197 Identities=13% Similarity=0.070 Sum_probs=110.9
Q ss_pred ecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC--CCCcccccE
Q psy2979 165 IVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP--MKLAVTSPA 240 (400)
Q Consensus 165 ~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~--l~~~~~~~~ 240 (400)
..+.+..+++.......+.+- ...-.+++.- ++.||+.-- ....+.++++.....+.+.. +..+ .+
T Consensus 51 ~~~~I~~i~~~g~~~~~~~~~--~~~~~~l~~d~~~~~ly~~D~-----~~~~I~r~~~~g~~~~~~~~~~~~~p---~g 120 (349)
T 3v64_C 51 NRIDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDV-----TLDRILRANLNGSNVEEVVSTGLESP---GG 120 (349)
T ss_dssp CBSCEEEECTTSCCEEEEECS--CSCEEEEEEETTTTEEEEEET-----TTTEEEEEETTSCSCEEEECSSCSCC---CE
T ss_pred cccceEEEeCCCCeeEEeecC--CCceEEEEEeccccEEEEEec-----cCCceEEEecCCCCceEEEeCCCCCc---cE
Confidence 345677788877666554321 1122333332 678998742 23578999998776555422 2222 23
Q ss_pred EEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEE
Q psy2979 241 VVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVE 314 (400)
Q Consensus 241 ~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 314 (400)
+++ .++.||+.... .+.++++++....-+.+. .+..| .++++- ++.||+..-.. ...++
T Consensus 121 lavd~~~g~ly~~d~~-------~~~I~~~~~dG~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~~-----~~~I~ 185 (349)
T 3v64_C 121 LAVDWVHDKLYWTDSG-------TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN-----TPRIE 185 (349)
T ss_dssp EEEETTTTEEEEEETT-------TTEEEEEETTSCSCEEEECTTCSCE---EEEEEETTTTEEEEEECSS-----SCEEE
T ss_pred EEEecCCCeEEEEcCC-------CCeEEEEcCCCCceEEEEeCCCCCc---ceEEEecCcCeEEEeccCC-----CCEEE
Confidence 444 47899998655 357999998765533332 23333 233343 68899886431 26899
Q ss_pred EEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcc
Q psy2979 315 CYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQI 391 (400)
Q Consensus 315 ~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 391 (400)
++++....-+.+.. .....+...++ +++||+.-.. ...|+++|+....-+.+.... ...-.++++.++
T Consensus 186 r~~~dG~~~~~~~~--~~~~~PnGla~d~~~~~lY~aD~~------~~~I~~~~~dG~~~~~~~~~~-~~~P~giav~~~ 256 (349)
T 3v64_C 186 ASSMDGSGRRIIAD--THLFWPNGLTIDYAGRRMYWVDAK------HHVIERANLDGSHRKAVISQG-LPHPFAITVFED 256 (349)
T ss_dssp EEETTSCSCEESCC--SSCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECSS-CSSEEEEEEETT
T ss_pred EEeCCCCCcEEEEE--CCCCCcceEEEeCCCCEEEEEECC------CCEEEEEeCCCCceEEEEeCC-CCCceEEEEECC
Confidence 99987654444322 11222333333 6899998543 358999998765433332211 112256666554
Q ss_pred cccc
Q psy2979 392 HKSQ 395 (400)
Q Consensus 392 ~~~~ 395 (400)
..|+
T Consensus 257 ~ly~ 260 (349)
T 3v64_C 257 SLYW 260 (349)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 203
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.03 E-value=1.2 Score=43.16 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=69.9
Q ss_pred eEEEECCeEEEEEee-cCEEEEEEC-CCCC--eEEccCCCCc-----c---eeeeEEE--ECCE----EEEEcccCCCCC
Q psy2979 151 GLVVSGRNTIYCLDI-VDIVYVAAS-MHKI--LHSLGSLKFD-----F---DVSGIAM--LDGF----VYAVGGWDGSCR 212 (400)
Q Consensus 151 ~~~~~~~~~iyv~~~-~~~~~~yd~-~~~~--w~~~~~~~~~-----r---~~~~~~~--~~~~----iyv~GG~~~~~~ 212 (400)
+-++.++. ||+... ...++.+|. .+++ |+.-...... . ...+.+. .+++ ||+...
T Consensus 57 tP~v~~g~-vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~------ 129 (599)
T 1w6s_A 57 APLVVDGK-MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL------ 129 (599)
T ss_dssp CCEEETTE-EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT------
T ss_pred ccEEECCE-EEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC------
Confidence 34556888 999866 678999999 7765 8875443211 1 1123444 4666 887532
Q ss_pred CCeEEEEeCCCCc--eEEccCCCCc--ccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCc--eeecc
Q psy2979 213 LDSVERYDPTKNE--WSYIEPMKLA--VTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQ--WQDLA 279 (400)
Q Consensus 213 ~~~v~~yd~~~~~--W~~~~~l~~~--~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~--W~~~~ 279 (400)
...+..+|..+++ |+.-..-+.. ....+-++.++.||+-.+. .... ...+..||..+.+ |+.-.
T Consensus 130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g---~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSG---AELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBC---GGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecc---cccCCCCeEEEEECCCCcEEEEEcC
Confidence 2468899998874 8753221111 1122334578888875431 1000 3478999998765 87543
No 204
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=95.99 E-value=1.1 Score=42.98 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=76.2
Q ss_pred EEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccc---cc-EEEE-eC-CEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVT---SP-AVVA-HE-GMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 201 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~---~~-~~~~-~~-~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
+++.|+.+ ..+..||..+.+-... +..... .. +++. -+ +..++.|+. ++ .+..||..+.+
T Consensus 175 ~l~~~~~d-----~~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg----~i~vwd~~~~~ 240 (615)
T 1pgu_A 175 RSMTVGDD-----GSVVFYQGPPFKFSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGS---DR----KISCFDGKSGE 240 (615)
T ss_dssp EEEEEETT-----TEEEEEETTTBEEEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEET---TC----CEEEEETTTCC
T ss_pred EEEEEeCC-----CcEEEEeCCCcceeee--ecccCCCCceEEEEEECCCCCCEEEEEeC---CC----eEEEEECCCCC
Confidence 66666654 4688889776543322 221111 12 2222 24 677777776 44 68999987765
Q ss_pred eeecc-CC--CCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc---CccCcceEEEECCEEEEE
Q psy2979 275 WQDLA-PM--LIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK---EKRYRPGIAVIDGKIYVL 348 (400)
Q Consensus 275 W~~~~-~~--~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~---~~~~~~~~~~~~~~lyv~ 348 (400)
....- .. .....-.++...++..++.|+. ...+..||..+.+....-..+ .......+...++..++.
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 314 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGA------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 314 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEESSSSEEEEEET------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred EeEEecccccccCCceEEEEEcCCCEEEEEcC------CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEE
Confidence 43322 10 1111111222227777777775 467999999887654432222 111111222225566666
Q ss_pred cCccCCCCCCCeEEEEECCCC
Q psy2979 349 GGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 349 GG~~~~~~~~~~v~~yd~~~~ 369 (400)
|+. + ..+..||..+.
T Consensus 315 ~~~-~-----g~i~~~d~~~~ 329 (615)
T 1pgu_A 315 LSL-D-----GTLNFYELGHD 329 (615)
T ss_dssp EET-T-----SCEEEEETTEE
T ss_pred EEC-C-----CCEEEEECCCC
Confidence 665 2 46888888763
No 205
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.73 Score=41.74 Aligned_cols=186 Identities=10% Similarity=0.011 Sum_probs=91.9
Q ss_pred EEEEeecCEEEEEECCCCC------eE-EccCCC-CcceeeeEEEE-C-CEEEEEcccCCCCCCCeEEEEeCCCCceEEc
Q psy2979 160 IYCLDIVDIVYVAASMHKI------LH-SLGSLK-FDFDVSGIAML-D-GFVYAVGGWDGSCRLDSVERYDPTKNEWSYI 229 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~------w~-~~~~~~-~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 229 (400)
++.......+..+|..+.+ -. ...... ....-.+++.. + +.+++.|+.+ ..+..||..+++....
T Consensus 129 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~ 203 (416)
T 2pm9_A 129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS-----NFASIWDLKAKKEVIH 203 (416)
T ss_dssp EEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS-----SCEEEEETTTTEEEEE
T ss_pred EEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC-----CCEEEEECCCCCcceE
Confidence 3333445678888887764 11 111111 11111222222 2 5677777755 3588999988765443
Q ss_pred cCCCC-----cccccEEEEe-C-CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC--CCceeeeEEEE--CCeEE
Q psy2979 230 EPMKL-----AVTSPAVVAH-E-GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML--IPRSGAAICAL--DSCIY 298 (400)
Q Consensus 230 ~~l~~-----~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~r~~~~~~~~--~~~iy 298 (400)
-..+. ...-.+++.. + ..+++.|+. ++. ...+..||..+..- .+..+. ....-.+++.. ++.++
T Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~-~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l 278 (416)
T 2pm9_A 204 LSYTSPNSGIKQQLSVVEWHPKNSTRVATATG---SDN-DPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLL 278 (416)
T ss_dssp ECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC---CSS-SCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCE
T ss_pred EeccccccccCCceEEEEECCCCCCEEEEEEC---CCC-CceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeE
Confidence 33221 1111122222 3 357777766 321 12578888876431 111222 11111222222 56777
Q ss_pred EEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 299 VLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 299 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
+.|+. ...+..||..+.+-... ++........+.+ ++ ++++.|+. + ..|.+||..+.
T Consensus 279 ~s~~~------dg~v~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~~l~s~~~-d-----~~i~iw~~~~~ 338 (416)
T 2pm9_A 279 LSSGR------DNTVLLWNPESAEQLSQ--FPARGNWCFKTKFAPEAPDLFACASF-D-----NKIEVQTLQNL 338 (416)
T ss_dssp EEEES------SSEEEEECSSSCCEEEE--EECSSSCCCCEEECTTCTTEEEECCS-S-----SEEEEEESCCC
T ss_pred EEEeC------CCCEEEeeCCCCcccee--ecCCCCceEEEEECCCCCCEEEEEec-C-----CcEEEEEccCC
Confidence 77776 46799999887653221 1111111112222 44 67777776 2 45777887654
No 206
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.94 E-value=1.6 Score=46.27 Aligned_cols=218 Identities=11% Similarity=0.009 Sum_probs=104.8
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE---CCE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML---DGF 200 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~---~~~ 200 (400)
..+.+||..+++....-. .....-.+++.. ++..+........+..+|..+++....-.. ....-.+++.. ++.
T Consensus 637 ~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 714 (1249)
T 3sfz_A 637 KTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHL 714 (1249)
T ss_dssp SCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSCC
T ss_pred CeEEEEECCCCCEEEEec-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcC-CCCcEEEEEEecCCCce
Confidence 468888888776432111 111112233333 333133335556788899887764321111 11111122222 334
Q ss_pred EEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC
Q psy2979 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP 280 (400)
Q Consensus 201 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~ 280 (400)
+++.|+.+ ..+..||..+++....-.-........+..-++..++.|+. ++ .+..||..+..-...-.
T Consensus 715 ~l~sg~~d-----~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~---dg----~v~vwd~~~~~~~~~~~ 782 (1249)
T 3sfz_A 715 LLATGSND-----FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA---DG----TLRLWDVRSANERKSIN 782 (1249)
T ss_dssp EEEEEETT-----SCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES---SS----EEEEEEGGGTEEEEEEE
T ss_pred EEEEEeCC-----CeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC---CC----eEEEEeCCCCcccceec
Confidence 55556644 35888998887643321111111111112236667777776 43 68888876654322111
Q ss_pred CCC------------C-ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEE
Q psy2979 281 MLI------------P-RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKI 345 (400)
Q Consensus 281 ~~~------------~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l 345 (400)
... . .....+..-++..+++++ .+.+..||..+............ .....+.+ ++++
T Consensus 783 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-------~~~v~~~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~ 854 (1249)
T 3sfz_A 783 VKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-------KNKVLLFDIHTSGLLAEIHTGHH-STIQYCDFSPYDHL 854 (1249)
T ss_dssp CCCCC--------CCCCCBCCCCBCTTSSEEEEEE-------TTEEEEEETTTCCEEEEEECSSS-SCCCEEEECSSTTE
T ss_pred ccccccccCCccccccceEEEEEECCCCCEEEEEc-------CCcEEEEEecCCCceeEEcCCCC-CceEEEEEcCCCCE
Confidence 000 0 000111122556555554 35788999888765443221111 11122222 5667
Q ss_pred EEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 346 YVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 346 yv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.++|+. + ..|.+||..+..
T Consensus 855 l~~~~~-d-----g~v~vwd~~~~~ 873 (1249)
T 3sfz_A 855 AVIALS-Q-----YCVELWNIDSRL 873 (1249)
T ss_dssp EEEECS-S-----SCEEEEETTTTE
T ss_pred EEEEeC-C-----CeEEEEEcCCCc
Confidence 777765 2 358889988764
No 207
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=95.94 E-value=0.16 Score=44.78 Aligned_cols=67 Identities=19% Similarity=0.322 Sum_probs=38.9
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc-cEEEEe-C--CEEEEEcCccccCCCCcceEEEEeCCCC-
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS-PAVVAH-E--GMLYVTGGAILEDGDGIEQVQRYNPKVN- 273 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~-~~~~~~-~--~~iyv~GG~~~~~~~~~~~v~~yd~~~~- 273 (400)
+.+++.|+.+ ..+..||+.+++|.....+...... .+++.. + +.+++.|+. ++ .+..||..+.
T Consensus 71 ~~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~---D~----~i~lwd~~~~~ 138 (316)
T 3bg1_A 71 GNILASCSYD-----RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS---DG----AISLLTYTGEG 138 (316)
T ss_dssp SSCEEEEETT-----SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECS---SS----CEEEEEECSSS
T ss_pred CCEEEEEECC-----CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcC---CC----CEEEEecCCCC
Confidence 5666777765 4588899988777544332211111 122222 2 567788877 54 5777777654
Q ss_pred ceee
Q psy2979 274 QWQD 277 (400)
Q Consensus 274 ~W~~ 277 (400)
.|..
T Consensus 139 ~~~~ 142 (316)
T 3bg1_A 139 QWEV 142 (316)
T ss_dssp CEEE
T ss_pred Ccce
Confidence 4643
No 208
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=95.93 E-value=0.7 Score=40.42 Aligned_cols=185 Identities=16% Similarity=0.211 Sum_probs=94.4
Q ss_pred ceEEEEEcC-CCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCC--eEEccCCCCcceeeeEEE-ECC
Q psy2979 125 RSVEGFCVK-TKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFDFDVSGIAM-LDG 199 (400)
Q Consensus 125 ~~~~~yd~~-~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~r~~~~~~~-~~~ 199 (400)
..+..||+. ...|..-. +... ..+.+.. ++. +|+......++.||+. ++ |....+ ... ..+.+. -++
T Consensus 117 ~~l~~~d~~g~~~~~~~~--~~~~-~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~--~~~-~~~~~~d~~g 188 (330)
T 3hxj_A 117 GHLYAINTDGTEKWRFKT--KKAI-YATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN--DAI-TSAASIGKDG 188 (330)
T ss_dssp SEEEEECTTSCEEEEEEC--SSCC-CSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS--SCC-CSCCEECTTC
T ss_pred CEEEEEcCCCCEEEEEcC--CCce-eeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC--CCc-eeeeEEcCCC
Confidence 367888887 22365432 2111 1223333 556 7876555789999998 44 543221 111 122233 367
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCC-CceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCc-ee
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTK-NEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ-WQ 276 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~-W~ 276 (400)
.||+.. ..+.+||... ..|+...+ ... ..+.+. -++.||+.... ..+.+||+.... |+
T Consensus 189 ~l~v~t--------~~l~~~d~~g~~~~~~~~~--~~~-~~~~~~~~~g~l~v~t~~--------~gl~~~~~~g~~~~~ 249 (330)
T 3hxj_A 189 TIYFGS--------DKVYAINPDGTEKWNFYAG--YWT-VTRPAISEDGTIYVTSLD--------GHLYAINPDGTEKWR 249 (330)
T ss_dssp CEEEES--------SSEEEECTTSCEEEEECCS--SCC-CSCCEECTTSCEEEEETT--------TEEEEECTTSCEEEE
T ss_pred EEEEEe--------CEEEEECCCCcEEEEEccC--Ccc-eeceEECCCCeEEEEcCC--------CeEEEECCCCCEeEE
Confidence 787754 3488888442 24655422 111 122233 35688875422 268888875554 54
Q ss_pred eccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCC-eEEEccCCcCccCcceEEE-ECCEEEEEc
Q psy2979 277 DLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAEN-TWEYKSPMKEKRYRPGIAV-IDGKIYVLG 349 (400)
Q Consensus 277 ~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~~~~~~~~~-~~~~lyv~G 349 (400)
.-..-+ ... ..+.. ++.||+... ...+.+||+... .|..- ++.. ...+.+. -+|+||+.+
T Consensus 250 ~~~~~~--~~~-~~~~~~~g~l~v~t~-------~ggl~~~d~~g~~~~~~~--~~~~-~~~~~~~d~~g~l~~gt 312 (330)
T 3hxj_A 250 FKTGKR--IES-SPVIGNTDTIYFGSY-------DGHLYAINPDGTEKWNFE--TGSW-IIATPVIDENGTIYFGT 312 (330)
T ss_dssp EECSSC--CCS-CCEECTTSCEEEECT-------TCEEEEECTTSCEEEEEE--CSSC-CCSCCEECTTCCEEEEC
T ss_pred eeCCCC--ccc-cceEcCCCeEEEecC-------CCCEEEECCCCcEEEEEE--cCCc-cccceEEcCCCEEEEEc
Confidence 432211 111 22233 678887542 237999998533 46542 2222 1222333 478888844
No 209
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.91 E-value=0.82 Score=40.25 Aligned_cols=198 Identities=11% Similarity=0.014 Sum_probs=108.2
Q ss_pred ecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCC----CceEEc-c-CCCCcc
Q psy2979 165 IVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTK----NEWSYI-E-PMKLAV 236 (400)
Q Consensus 165 ~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~-~-~l~~~~ 236 (400)
..+.+..+|+.+.....+-+ ....-.+++.- ++.||+.... ...+.++++.. .....+ + .+..+
T Consensus 8 ~~~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~-----~~~I~~~~~~g~~~~~~~~~~~~~~~~~p- 79 (316)
T 1ijq_A 8 NRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQAP- 79 (316)
T ss_dssp CBSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEECSSCSCC-
T ss_pred CCCeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECC-----CCcEEEEECCCCCCCcccEEEEeCCCCCc-
Confidence 34567888888877655432 11222344443 5789998542 35789999876 222222 1 12222
Q ss_pred cccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEE--ECCeEEEEcCcCCCCCCC
Q psy2979 237 TSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICA--LDSCIYVLGGWHASTENT 310 (400)
Q Consensus 237 ~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~ 310 (400)
.++++ .++.||+.-.. ...+.++|+....-..+. .+..| .++++ .++.||+..-.. .
T Consensus 80 --~glavd~~~~~ly~~d~~-------~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~~-----~ 142 (316)
T 1ijq_A 80 --DGLAVDWIHSNIYWTDSV-------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWGT-----P 142 (316)
T ss_dssp --CEEEEETTTTEEEEEETT-------TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECSS-----S
T ss_pred --CEEEEeecCCeEEEEECC-------CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccCC-----C
Confidence 34444 47899998554 357899998765433332 23333 23333 378999886321 3
Q ss_pred CeEEEEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCC-CCCCceee
Q psy2979 311 NRVECYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP-SARSWLGC 386 (400)
Q Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~ 386 (400)
..++++++....-+.+... ....+...++ +++||+.-.. .+.|+++|+....-+.+...+ ....-.++
T Consensus 143 ~~I~~~~~dG~~~~~~~~~--~~~~P~gla~d~~~~~lY~~D~~------~~~I~~~d~dg~~~~~~~~~~~~~~~P~gi 214 (316)
T 1ijq_A 143 AKIKKGGLNGVDIYSLVTE--NIQWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSL 214 (316)
T ss_dssp CEEEEEETTSCCEEEEECS--SCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEECTTTTSSEEEE
T ss_pred CeEEEEcCCCCCeEEEEEC--CCCCceEEEEeccCCEEEEEECC------CCeEEEEecCCCceEEEeecCCccCCcEEE
Confidence 5899999876544433221 1222333333 6899998643 368999998765444443221 11223566
Q ss_pred EEEcccccc
Q psy2979 387 VPLQIHKSQ 395 (400)
Q Consensus 387 ~~~~~~~~~ 395 (400)
++.++..|+
T Consensus 215 av~~~~ly~ 223 (316)
T 1ijq_A 215 AVFEDKVFW 223 (316)
T ss_dssp EEETTEEEE
T ss_pred EEECCEEEE
Confidence 665544443
No 210
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=95.90 E-value=0.53 Score=41.06 Aligned_cols=193 Identities=14% Similarity=0.125 Sum_probs=97.2
Q ss_pred EEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCc--
Q psy2979 160 IYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLA-- 235 (400)
Q Consensus 160 iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~-- 235 (400)
||+. .....++.+++ +++........ . .-.+++.- ++++|+.... ...+.+||+. ++.+.+......
T Consensus 59 l~~~d~~~~~i~~~~~-~g~~~~~~~~~-~-~~~gl~~d~dG~l~v~~~~-----~~~v~~~~~~-g~~~~~~~~~~~~~ 129 (305)
T 3dr2_A 59 LVWSDLVGRRVLGWRE-DGTVDVLLDAT-A-FTNGNAVDAQQRLVHCEHG-----RRAITRSDAD-GQAHLLVGRYAGKR 129 (305)
T ss_dssp EEEEETTTTEEEEEET-TSCEEEEEESC-S-CEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECEETTEE
T ss_pred EEEEECCCCEEEEEeC-CCCEEEEeCCC-C-ccceeeECCCCCEEEEECC-----CCEEEEECCC-CCEEEEEeccCCCc
Confidence 5555 33457888888 44444332211 1 11222222 5678876321 1468889986 666655432111
Q ss_pred --ccccEEEEeCCEEEEE----cCccccCC----C-C-cceEEEEeCCCCceeeccCCCCCceeeeEEEE-CC-eEEEEc
Q psy2979 236 --VTSPAVVAHEGMLYVT----GGAILEDG----D-G-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DS-CIYVLG 301 (400)
Q Consensus 236 --~~~~~~~~~~~~iyv~----GG~~~~~~----~-~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~G 301 (400)
.....+..-+|.||+. |-.....+ . . ...+++||+.+.+++.+..+..+ .+++.. ++ .||+..
T Consensus 130 ~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p---~gl~~spdg~~lyv~~ 206 (305)
T 3dr2_A 130 LNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHP---NGLAFSPDEQTLYVSQ 206 (305)
T ss_dssp CSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSE---EEEEECTTSSEEEEEE
T ss_pred cCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCC---cceEEcCCCCEEEEEe
Confidence 1122233347889986 32100000 0 1 35799999988887766411111 223333 44 478775
Q ss_pred CcCCCCCCCCeEEEEECCCCeEEE---ccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 302 GWHASTENTNRVECYHIAENTWEY---KSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 302 G~~~~~~~~~~v~~yd~~~~~W~~---~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
....... ...+++||...+.... ....+.. ...+++.- +|+||+..+ +.|.+||+.......+
T Consensus 207 ~~~~~~~-~~~i~~~~~~~~~l~~~~~~~~~~~~-~pdgi~~d~~G~lwv~~~--------~gv~~~~~~g~~~~~~ 273 (305)
T 3dr2_A 207 TPEQGHG-SVEITAFAWRDGALHDRRHFASVPDG-LPDGFCVDRGGWLWSSSG--------TGVCVFDSDGQLLGHI 273 (305)
T ss_dssp CCC---C-CCEEEEEEEETTEEEEEEEEECCSSS-CCCSEEECTTSCEEECCS--------SEEEEECTTSCEEEEE
T ss_pred cCCcCCC-CCEEEEEEecCCCccCCeEEEECCCC-CCCeEEECCCCCEEEecC--------CcEEEECCCCCEEEEE
Confidence 4321111 2589999987665321 1111111 11122222 677887653 2599999976655554
No 211
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.89 E-value=1.5 Score=43.27 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=71.9
Q ss_pred EEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCc--------ceeeeEEEECCEEEEEcccCCCCCCCeEEEEeC
Q psy2979 152 LVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFD--------FDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDP 221 (400)
Q Consensus 152 ~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 221 (400)
-++.++. ||+......++.+|..+++ |+.-...+.. ....+.+..+++||+.+. ...+..+|.
T Consensus 66 P~v~~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~------dg~l~AlDa 138 (689)
T 1yiq_A 66 PIVVDGV-MYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL------DGRLEAIDA 138 (689)
T ss_dssp CEEETTE-EEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEEEEEET
T ss_pred CEEECCE-EEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc------CCEEEEEEC
Confidence 3456888 9998666789999998776 8764433211 012234567889988642 246889999
Q ss_pred CCCc--eEEccC-CCC--cccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCc--eeec
Q psy2979 222 TKNE--WSYIEP-MKL--AVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQ--WQDL 278 (400)
Q Consensus 222 ~~~~--W~~~~~-l~~--~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~--W~~~ 278 (400)
.+++ |+.-.. -+. .....+-++.++.+|+..+. .... ...+..||..+.+ |+.-
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~---~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 139 KTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGG---AEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBC---TTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCC---CccCCCCEEEEEECCCCcEEEEec
Confidence 8874 876542 111 11122335678998874332 1111 3479999998776 8753
No 212
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=95.88 E-value=0.069 Score=47.35 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=79.1
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCC-EEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEG-MLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++.+|+.++.+ ..+.++|+.+++....-+++.....+.++. -++ .+|+.+.. ...+..||+.+.+.
T Consensus 10 ~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~-------~~~i~~~d~~t~~~ 77 (349)
T 1jmx_B 10 GHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH-------YGDIYGIDLDTCKN 77 (349)
T ss_dssp TCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT-------TTEEEEEETTTTEE
T ss_pred CCEEEEEeCCC-----CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC-------CCcEEEEeCCCCcE
Confidence 56788877643 568999999887644333332112233333 344 58887654 24799999988765
Q ss_pred eeccCCCC-----CceeeeEEEE-CCeEEEEcCcC------CC-CCCCCeEEEEECCCCeEEE-ccCCcCccCcceEEE-
Q psy2979 276 QDLAPMLI-----PRSGAAICAL-DSCIYVLGGWH------AS-TENTNRVECYHIAENTWEY-KSPMKEKRYRPGIAV- 340 (400)
Q Consensus 276 ~~~~~~~~-----~r~~~~~~~~-~~~iyv~GG~~------~~-~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~- 340 (400)
...-..+. ...-..++.. +++.+++++.. .. .. ...+..||+.+++-.. +...+.+....+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 156 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK-PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA 156 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC-CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC
T ss_pred EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC-CCeEEEEECCCccccceeeeccCCCcccceeEC
Confidence 43222221 1111233333 45443343321 00 00 2589999987743111 111111222222222
Q ss_pred ECCEEEEEcCccCCCCCCCeEEEEECCCCcEEE
Q psy2979 341 IDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 341 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
-++++|+.++ ++++||+.+++-..
T Consensus 157 ~dg~l~~~~~---------~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 157 DDGSLYVAGP---------DIYKMDVKTGKYTV 180 (349)
T ss_dssp TTSCEEEESS---------SEEEECTTTCCEEE
T ss_pred CCCcEEEccC---------cEEEEeCCCCceec
Confidence 2677777432 38999998876443
No 213
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=95.88 E-value=1.1 Score=44.25 Aligned_cols=237 Identities=11% Similarity=0.016 Sum_probs=116.3
Q ss_pred cceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee-------------cCEEEEEECCCCCeE--EccCCC-
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI-------------VDIVYVAASMHKILH--SLGSLK- 186 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~-------------~~~~~~yd~~~~~w~--~~~~~~- 186 (400)
..++.++|..+++......++.... ...+.. ++..|+.... ...++.++..++.-. .+...+
T Consensus 146 ~~~i~v~dl~tg~~~~~~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~ 224 (695)
T 2bkl_A 146 EAVLHVIDVDSGEWSKVDVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG 224 (695)
T ss_dssp CCEEEEEETTTCCBCSSCCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC
T ss_pred eEEEEEEECCCCCCcCCcccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC
Confidence 3578888988887541112221111 233333 4442333321 234888888766521 221111
Q ss_pred CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceE
Q psy2979 187 FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 187 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v 265 (400)
.+....+...- +++..+++...+. ....++.+|..++.|..+..-.... ...+..++.+|+.... +.. ...+
T Consensus 225 ~~~~~~~~~~SpDG~~l~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~g~l~~~s~~---~~~-~~~l 297 (695)
T 2bkl_A 225 DPTTFLQSDLSRDGKYLFVYILRGW-SENDVYWKRPGEKDFRLLVKGVGAK--YEVHAWKDRFYVLTDE---GAP-RQRV 297 (695)
T ss_dssp CTTCEEEEEECTTSCCEEEEEEETT-TEEEEEEECTTCSSCEEEEECSSCC--EEEEEETTEEEEEECT---TCT-TCEE
T ss_pred CCEEEEEEEECCCCCEEEEEEeCCC-CceEEEEEcCCCCceEEeecCCCce--EEEEecCCcEEEEECC---CCC-CCEE
Confidence 11222222222 4443333332211 2356777787777887775422222 1222245666666443 211 3579
Q ss_pred EEEeCCCCc---eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEE-EE
Q psy2979 266 QRYNPKVNQ---WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIA-VI 341 (400)
Q Consensus 266 ~~yd~~~~~---W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~-~~ 341 (400)
+.+|..+.. |+.+-+-........+...++.+++....++ ...++.+++..+.-..+. ++......++. .-
T Consensus 298 ~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l~-~~~~~~v~~~~~s~ 372 (695)
T 2bkl_A 298 FEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDA----TSEVRVATLKGKPVRTVQ-LPGVGAASNLMGLE 372 (695)
T ss_dssp EEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETT----EEEEEEEETTCCEEEECC-CSSSSEECCCBSCT
T ss_pred EEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECC----EEEEEEEeCCCCeeEEec-CCCCeEEEEeecCC
Confidence 999987654 8777543212222233344888888765433 457888997655444443 22111101110 01
Q ss_pred CC-EEEEEcCccCCCCCCCeEEEEECCCCcEEEecC
Q psy2979 342 DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 342 ~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 376 (400)
++ .+++.... ...-..++.||..+++.+.+..
T Consensus 373 d~~~l~~~~ss---~~~P~~v~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 373 DLDDAYYVFTS---FTTPRQIYKTSVSTGKSELWAK 405 (695)
T ss_dssp TCSEEEEEEEE---TTEEEEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEEEcC---CCCCCEEEEEECCCCcEEEEec
Confidence 33 44443211 1223578999999888776654
No 214
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.86 E-value=0.29 Score=44.18 Aligned_cols=194 Identities=9% Similarity=-0.090 Sum_probs=97.8
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCE-EEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc-EEE
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGF-VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP-AVV 242 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~-~~~ 242 (400)
..++.+|+.+++...+.... ......... ++. |++............++.+|..++++..+.. ..+.... ..+
T Consensus 168 ~~l~~~d~~~g~~~~~~~~~--~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~ 244 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQDT--AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEF 244 (396)
T ss_dssp EEEEEEETTTCCEEEEEEES--SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEE
T ss_pred ceEEEEECCCCcEEeeccCC--cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCccccceE
Confidence 36788888887766554311 111122222 243 5444321111122578999998888777654 2111111 112
Q ss_pred -EeCCE-EEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCC-----------CCC
Q psy2979 243 -AHEGM-LYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHA-----------STE 308 (400)
Q Consensus 243 -~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~-----------~~~ 308 (400)
.-+++ |+..+.. ++.....++.+|..+.+...+...+. .. ....- +++++++++... ...
T Consensus 245 ~spdg~~l~~~~~~---~~~~~~~l~~~d~~~g~~~~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~ 318 (396)
T 3c5m_A 245 WIPDGSAMAYVSYF---KGQTDRVIYKANPETLENEEVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEN 318 (396)
T ss_dssp ECTTSSCEEEEEEE---TTTCCEEEEEECTTTCCEEEEEECCS--EE-EEEECSSSSEEEEEECCC----------CCCC
T ss_pred ECCCCCEEEEEecC---CCCccceEEEEECCCCCeEEeeeCCC--CC-CCccCCCCceEEEecCCcceeeccccccccCC
Confidence 22454 4444221 22112359999998887776654442 12 23333 677666654221 011
Q ss_pred CCCeEEEEECCCCeEEEccCCcCcc----------CcceEEEECC-EEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 309 NTNRVECYHIAENTWEYKSPMKEKR----------YRPGIAVIDG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 309 ~~~~v~~yd~~~~~W~~~~~~~~~~----------~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
...++.+|+.+++...+...+... .......-+| +|+..... . ....++.+|..++.++..
T Consensus 319 -~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~-~---~~~~l~~~~~~~~~~~~~ 390 (396)
T 3c5m_A 319 -DPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF-E---GVPAIYIADVPESYKHLE 390 (396)
T ss_dssp -CCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-T---SSCEEEEEECCTTCC---
T ss_pred -CCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecC-C---CCceEEEEEEcccccccc
Confidence 468999999888765554332210 1111112244 45554432 2 235799999988877665
No 215
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=95.86 E-value=0.93 Score=40.47 Aligned_cols=170 Identities=12% Similarity=0.084 Sum_probs=85.0
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE---CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML---DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV 236 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~ 236 (400)
++.......+..+|..+++....-.- ....-.++... ++..++.|+.+ ..+..||..+++....-......
T Consensus 169 l~t~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~g~~l~sgs~D-----g~v~~wd~~~~~~~~~~~~h~~~ 242 (354)
T 2pbi_B 169 ILTASGDGTCALWDVESGQLLQSFHG-HGADVLCLDLAPSETGNTFVSGGCD-----KKAMVWDMRSGQCVQAFETHESD 242 (354)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECCCSSCCEEEEEETT-----SCEEEEETTTCCEEEEECCCSSC
T ss_pred EEEEeCCCcEEEEeCCCCeEEEEEcC-CCCCeEEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCcEEEEecCCCCC
Confidence 33335556788889887654321100 00011111111 34677777766 35888999887654322111111
Q ss_pred cccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeE
Q psy2979 237 TSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRV 313 (400)
Q Consensus 237 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 313 (400)
. .+++. -++..++.|+. ++ .+..||..+..-...-...........+.. ++.+++.|+. ...+
T Consensus 243 v-~~v~~~p~~~~l~s~s~---D~----~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~------d~~i 308 (354)
T 2pbi_B 243 V-NSVRYYPSGDAFASGSD---DA----TCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN------DYTI 308 (354)
T ss_dssp E-EEEEECTTSSEEEEEET---TS----CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSCE
T ss_pred e-EEEEEeCCCCEEEEEeC---CC----eEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC------CCcE
Confidence 1 11222 25777788887 54 688899877643222111111112222222 6777777765 4578
Q ss_pred EEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCc
Q psy2979 314 ECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGE 351 (400)
Q Consensus 314 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~ 351 (400)
..||..+++-.. .+.........+.+ +++.++.|+.
T Consensus 309 ~vwd~~~~~~~~--~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 309 NVWDVLKGSRVS--ILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp EEEETTTCSEEE--EECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEECCCCceEE--EEECCCCcEEEEEECCCCCEEEEEcC
Confidence 899987654221 11111111222233 6666777765
No 216
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.85 E-value=0.32 Score=43.95 Aligned_cols=217 Identities=10% Similarity=0.033 Sum_probs=98.0
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEEeecCEEEEEECCCCCeEEccCCCCc-ceeeeEEEE-CC-
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD-FDVSGIAML-DG- 199 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~-r~~~~~~~~-~~- 199 (400)
..+..||..+++.......+........... ++..+++......+..||..+.+... .+... ..-.+++.. ++
T Consensus 122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 122 KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH--ILQGHRQEILAVSWSPRYD 199 (408)
T ss_dssp SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE--EECCCCSCEEEEEECSSCT
T ss_pred CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee--eecCCCCcEEEEEECCCCC
Confidence 4688888887764433222222221111111 12213333455678888887654221 11111 111122222 33
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCc--eEEccC--------CC---Ccccc-cEEEEe--CCEEEEEcCccccCCCCcc
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNE--WSYIEP--------MK---LAVTS-PAVVAH--EGMLYVTGGAILEDGDGIE 263 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~--------l~---~~~~~-~~~~~~--~~~iyv~GG~~~~~~~~~~ 263 (400)
.+++.|+.++ .+..||..+.. ...+.. .. ..... .....+ ++..++.|+. ++
T Consensus 200 ~ll~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg---- 267 (408)
T 4a11_B 200 YILATASADS-----RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT---DN---- 267 (408)
T ss_dssp TEEEEEETTS-----CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET---TS----
T ss_pred cEEEEEcCCC-----cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC---CC----
Confidence 3677777653 47788876543 111110 00 11111 112222 5667777776 44
Q ss_pred eEEEEeCCCCceeeccC-----CCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceE
Q psy2979 264 QVQRYNPKVNQWQDLAP-----MLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGI 338 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~~~-----~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~ 338 (400)
.+..||..+..-..... ..............+..+++++. ...+..||..+.+-... +.........
T Consensus 268 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~v~d~~~~~~~~~--~~~~~~~v~~ 339 (408)
T 4a11_B 268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY------GSTIAVYTVYSGEQITM--LKGHYKTVDC 339 (408)
T ss_dssp CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE------TTEEEEEETTTCCEEEE--ECCCSSCEEE
T ss_pred eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec------CCEEEEEECcCCcceee--eccCCCeEEE
Confidence 68999987765322210 01111111111112333344433 35788899877653322 1111111122
Q ss_pred EEE--CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 339 AVI--DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 339 ~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
+.+ ++++++.|+. + ..|.+||+.+.
T Consensus 340 ~~~s~~~~~l~s~~~-d-----g~i~iw~~~~~ 366 (408)
T 4a11_B 340 CVFQSNFQELYSGSR-D-----CNILAWVPSLY 366 (408)
T ss_dssp EEEETTTTEEEEEET-T-----SCEEEEEECC-
T ss_pred EEEcCCCCEEEEECC-C-----CeEEEEeCCCC
Confidence 222 6677777776 2 35778887764
No 217
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=95.80 E-value=0.34 Score=45.09 Aligned_cols=147 Identities=12% Similarity=0.058 Sum_probs=83.3
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEE--c----cCCCCcccccEEEE--eCCEEEEEcCccccCCCCcce
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSY--I----EPMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~--~----~~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 264 (400)
+++.+++.+|++-| ..+|+++.....+.. + +.||... . ++.. .++++|++-|. .
T Consensus 267 Ai~~~~ge~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~i-D-Aa~~~~~~g~~~fFKg~---------~ 328 (450)
T 1su3_A 267 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFWPQLPNGL-E-AAYEFADRDEVRFFKGN---------K 328 (450)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTCTTSCSSC-C-EEEEEGGGTEEEEEETT---------E
T ss_pred eEEecCCeEEEEeC-------CEEEEEcCCCCcccceehhHhccCCCCCe-e-EEEEEcCCCeEEEEeCC---------E
Confidence 45668999999977 446666654433321 1 2344322 1 2222 37999999887 6
Q ss_pred EEEEeCCCCc--e-eecc---CCCC-CceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-----cc-CC
Q psy2979 265 VQRYNPKVNQ--W-QDLA---PMLI-PRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEY-----KS-PM 329 (400)
Q Consensus 265 v~~yd~~~~~--W-~~~~---~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-----~~-~~ 329 (400)
+|+|+..+-. + ..+. .+|. +..-=++... ++++|++-|. ..|+||..+++-.. +. ..
T Consensus 329 ~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG~--------~yw~yd~~~~~~~~gYPk~I~~~f 400 (450)
T 1su3_A 329 YWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN--------KYWRYDEYKRSMDPGYPKMIAHDF 400 (450)
T ss_dssp EEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT--------EEEEEETTTTEECSSCSEEHHHHS
T ss_pred EEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeCC--------EEEEEeCCCccccCCCCcchhhcC
Confidence 8888753210 0 0111 1221 1111122233 6899999863 89999987654221 11 11
Q ss_pred c-CccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEE
Q psy2979 330 K-EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 330 ~-~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
| .+..--++...++++|+|-|. ..|+||..+.+=..
T Consensus 401 pgip~~iDAA~~~~g~~YFFkg~--------~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 401 PGIGHKVDAVFMKDGFFYFFHGT--------RQYKFDPKTKRILT 437 (450)
T ss_dssp TTSCSCCSEEEEETTEEEEEETT--------EEEEEETTTTEEEE
T ss_pred CCCCCCccEEEEcCCeEEEEeCC--------EEEEEECCcceEec
Confidence 1 122223344568999999886 67999998876544
No 218
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.96 Score=39.87 Aligned_cols=190 Identities=11% Similarity=0.157 Sum_probs=89.9
Q ss_pred ecCEEEEEECCCCCeEEccCCC---CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCC-----ceEEccCCCCc
Q psy2979 165 IVDIVYVAASMHKILHSLGSLK---FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKN-----EWSYIEPMKLA 235 (400)
Q Consensus 165 ~~~~~~~yd~~~~~w~~~~~~~---~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~-----~W~~~~~l~~~ 235 (400)
....+..+|..++.+.....+. ....-.+++.. ++.+++.|+.++ .+..||.... ++..+..+...
T Consensus 32 ~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~~~h 106 (330)
T 2hes_X 32 TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS-----TVSIWAKEESADRTFEMDLLAIIEGH 106 (330)
T ss_dssp SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS-----CEEEEEC-------CCCEEEEEEC--
T ss_pred CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC-----cEEEEEcccCcCccccceeEEEEcCC
Confidence 3355677777665444333221 11111122221 566777777653 4777776432 22222212111
Q ss_pred ccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCC--CceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCC
Q psy2979 236 VTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKV--NQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTEN 309 (400)
Q Consensus 236 ~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 309 (400)
...-..+. -+++.++.|+. ++ .+..||... ..+..+..+.........+.. ++.+++.|+.
T Consensus 107 ~~~V~~v~~sp~g~~las~s~---D~----~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~------ 173 (330)
T 2hes_X 107 ENEVKGVAWSNDGYYLATCSR---DK----SVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY------ 173 (330)
T ss_dssp --CEEEEEECTTSCEEEEEET---TS----CEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET------
T ss_pred CCcEEEEEECCCCCEEEEEeC---CC----EEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC------
Confidence 11111122 26777777777 54 688888742 334433322221111222222 5677777776
Q ss_pred CCeEEEEECCCCeEEEccCCcCccCcceEEEE--C--CEEEEEcCccCCCCCCCeEEEEECCC------CcEEEecCCC
Q psy2979 310 TNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--D--GKIYVLGGEEGWDGYHDSIECYDVDN------DSWEIMSHLP 378 (400)
Q Consensus 310 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~~~------~~W~~~~~~~ 378 (400)
...+..+|..++.|..+..+......-..+.+ + +..++.|+. + ..|.+||..+ ..|.....++
T Consensus 174 D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-D-----~~v~iw~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 2hes_X 174 DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD-D-----STVRVWKYMGDDEDDQQEWVCEAILP 246 (330)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-T-----SCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred CCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-C-----CeEEEEEecCCCccccceeEEeeecc
Confidence 45688888877777665544322222222233 2 445566665 2 2455665533 2466555444
No 219
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=95.69 E-value=0.68 Score=44.50 Aligned_cols=190 Identities=11% Similarity=0.044 Sum_probs=91.7
Q ss_pred CCeEEEEEeecCEEEEEECCCC----C-eEEccCCCCcce-eeeEEE-E--CCEEEEEcccCCCCCCCeEEEEeCCCC--
Q psy2979 156 GRNTIYCLDIVDIVYVAASMHK----I-LHSLGSLKFDFD-VSGIAM-L--DGFVYAVGGWDGSCRLDSVERYDPTKN-- 224 (400)
Q Consensus 156 ~~~~iyv~~~~~~~~~yd~~~~----~-w~~~~~~~~~r~-~~~~~~-~--~~~iyv~GG~~~~~~~~~v~~yd~~~~-- 224 (400)
++. .+++.....+..||..++ + -..+..- ... -.+++. - +++.++.|+.+ ..+..||..++
T Consensus 29 dg~-~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h--~~~~v~~~~~sp~~~~~~l~s~~~d-----g~v~vw~~~~~~~ 100 (615)
T 1pgu_A 29 TTN-AIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH--GSSVVTTVKFSPIKGSQYLCSGDES-----GKVIVWGWTFDKE 100 (615)
T ss_dssp TTT-EEEEEETTEEEEEECCSSCCSSCSEEEECTT--TTSCEEEEEECSSTTCCEEEEEETT-----SEEEEEEEEEEGG
T ss_pred CCC-EEEEecCCeEEEEECCCCCCccccceEEecC--CCceEEEEEECcCCCCCEEEEecCC-----CEEEEEeCCCCcc
Confidence 344 444444567888888765 2 1222111 111 122222 2 56777777754 35778887644
Q ss_pred ----ceEEccCCCCccccc-EEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCe-
Q psy2979 225 ----EWSYIEPMKLAVTSP-AVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSC- 296 (400)
Q Consensus 225 ----~W~~~~~l~~~~~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~- 296 (400)
.......+....... +++ .-+++..++++. +......++.||... .-..+..-.. .-.++... ++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---~~~~~~~v~~~d~~~-~~~~~~~~~~--~v~~~~~~~~~~~ 174 (615)
T 1pgu_A 101 SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE---GRDNFGVFISWDSGN-SLGEVSGHSQ--RINACHLKQSRPM 174 (615)
T ss_dssp GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC---CSSCSEEEEETTTCC-EEEECCSCSS--CEEEEEECSSSSC
T ss_pred cccccccccchhhcccccEEEEEEeCCCCEEEEecc---CCCCccEEEEEECCC-cceeeecCCc--cEEEEEECCCCCc
Confidence 333332222111111 121 235666666665 322134677777322 2222211111 11122222 443
Q ss_pred EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccC---cceEEEE--C-CEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 297 IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRY---RPGIAVI--D-GKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 297 iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~---~~~~~~~--~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+++.|+. ...+..||..+.+-... +..... ....+.+ + ++.++.|+. + ..|.+||..+++
T Consensus 175 ~l~~~~~------d~~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----g~i~vwd~~~~~ 240 (615)
T 1pgu_A 175 RSMTVGD------DGSVVFYQGPPFKFSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGS-D-----RKISCFDGKSGE 240 (615)
T ss_dssp EEEEEET------TTEEEEEETTTBEEEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEET-T-----CCEEEEETTTCC
T ss_pred EEEEEeC------CCcEEEEeCCCcceeee--ecccCCCCceEEEEEECCCCCCEEEEEeC-C-----CeEEEEECCCCC
Confidence 6777765 46889999877654332 221111 2223333 5 677777776 2 468999988776
Q ss_pred EEE
Q psy2979 371 WEI 373 (400)
Q Consensus 371 W~~ 373 (400)
...
T Consensus 241 ~~~ 243 (615)
T 1pgu_A 241 FLK 243 (615)
T ss_dssp EEE
T ss_pred EeE
Confidence 443
No 220
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.67 E-value=0.66 Score=45.00 Aligned_cols=120 Identities=11% Similarity=0.138 Sum_probs=71.0
Q ss_pred EEEECCEEEEEcccCCCCCCCeEEEEeC-CCC--ceEEccCCCCc--------ccccEEEE--eCCE----EEEEcCccc
Q psy2979 194 IAMLDGFVYAVGGWDGSCRLDSVERYDP-TKN--EWSYIEPMKLA--------VTSPAVVA--HEGM----LYVTGGAIL 256 (400)
Q Consensus 194 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~-~~~--~W~~~~~l~~~--------~~~~~~~~--~~~~----iyv~GG~~~ 256 (400)
-++.++.||+.+.. ...+..+|. .++ .|+.-...+.. ....+.++ .+++ ||+....
T Consensus 58 P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~d-- 130 (599)
T 1w6s_A 58 PLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLD-- 130 (599)
T ss_dssp CEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTT--
T ss_pred cEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCC--
Confidence 34569999998652 235899999 776 48876543321 11223455 6777 8876432
Q ss_pred cCCCCcceEEEEeCCCCc--eeeccCCCCC--ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEEcc
Q psy2979 257 EDGDGIEQVQRYNPKVNQ--WQDLAPMLIP--RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT--WEYKS 327 (400)
Q Consensus 257 ~~~~~~~~v~~yd~~~~~--W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~ 327 (400)
..++++|..+.+ |+.-..-... ....+-++.++.+|+-.+..+... ...+..||..+++ |+.-.
T Consensus 131 ------g~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~-~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 131 ------GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGV-RGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp ------SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTC-CCEEEEEETTTCCEEEEEES
T ss_pred ------CEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCC-CCeEEEEECCCCcEEEEEcC
Confidence 368999987765 8753211100 112233456888876443211112 4689999998775 87654
No 221
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=95.66 E-value=0.97 Score=39.24 Aligned_cols=185 Identities=12% Similarity=0.035 Sum_probs=86.6
Q ss_pred EEEEeccCCCcccceEEEEEcCCCceEE-ccCCcccceeeeEEEECCeEEEEE-eecCEEEEEECCCCCeEEccCCC-Cc
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKT-LSCLPFAISKHGLVVSGRNTIYCL-DIVDIVYVAASMHKILHSLGSLK-FD 188 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~w~~-~~~~~~~~~~~~~~~~~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~-~~ 188 (400)
.++.|+.+ ..+.++|..+++-.. +.. ....-.+++...+..+++. .....+..+|..++. .....+. ..
T Consensus 69 ~l~s~s~d-----~~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~~h~ 140 (304)
T 2ynn_A 69 WIIVGSDD-----FRIRVFNYNTGEKVVDFEA--HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHE 140 (304)
T ss_dssp EEEEEETT-----SEEEEEETTTCCEEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-EEEEEECCCC
T ss_pred EEEEECCC-----CEEEEEECCCCcEEEEEeC--CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-chhhhhcccC
Confidence 44555544 467888887765321 111 1111123333322212222 444567778876542 1111111 11
Q ss_pred ceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe---CCEEEEEcCccccCCCCcc
Q psy2979 189 FDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH---EGMLYVTGGAILEDGDGIE 263 (400)
Q Consensus 189 r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~ 263 (400)
..-.+++.. ++.+++.|+.+ ..+..||..+.+-...-.......-..+... ++.+++.|+. ++
T Consensus 141 ~~v~~v~~~p~~~~~l~sgs~D-----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~---D~---- 208 (304)
T 2ynn_A 141 HFVMCVAFNPKDPSTFASGCLD-----RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD---DL---- 208 (304)
T ss_dssp SCEEEEEECTTCTTEEEEEETT-----SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET---TS----
T ss_pred CcEEEEEECCCCCCEEEEEeCC-----CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC---CC----
Confidence 111222222 34677777765 4588888765431110000011111111111 4566777776 44
Q ss_pred eEEEEeCCCCceeeccCCCCCceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 264 QVQRYNPKVNQWQDLAPMLIPRSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
.+..||..+.+-. ..+.........+. -++.+++.|+. ...+..||..+.+-.
T Consensus 209 ~i~iWd~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~s~s~------Dg~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 209 TIKIWDYQTKSCV--ATLEGHMSNVSFAVFHPTLPIIISGSE------DGTLKIWNSSTYKVE 263 (304)
T ss_dssp EEEEEETTTTEEE--EEEECCSSCEEEEEECSSSSEEEEEET------TSCEEEEETTTCCEE
T ss_pred eEEEEeCCCCccc--eeeCCCCCCEEEEEECCCCCEEEEEcC------CCeEEEEECCCCcee
Confidence 7889998765422 11111111111222 25667777776 457889998877644
No 222
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=95.64 E-value=0.49 Score=41.77 Aligned_cols=136 Identities=10% Similarity=0.057 Sum_probs=68.3
Q ss_pred eecCEEEEEECCCCC--eEEccCCCC--cceeeeEE-----EECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC
Q psy2979 164 DIVDIVYVAASMHKI--LHSLGSLKF--DFDVSGIA-----MLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL 234 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~--w~~~~~~~~--~r~~~~~~-----~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~ 234 (400)
.....+..||..+++ ...+..... .+.-.+++ ..++.+++.|+.+ ..+..||..+.+-........
T Consensus 136 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~ 210 (357)
T 3i2n_A 136 SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN-----GDIKLFDLRNMALRWETNIKN 210 (357)
T ss_dssp ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT-----SEEEEEETTTTEEEEEEECSS
T ss_pred eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC-----CeEEEEECccCceeeecCCCC
Confidence 455678888887764 333322211 11222222 1356677777654 468899998876433322222
Q ss_pred cccccEEEEe----CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCC------CCCceeeeEEEE-CCe-EEEEcC
Q psy2979 235 AVTSPAVVAH----EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM------LIPRSGAAICAL-DSC-IYVLGG 302 (400)
Q Consensus 235 ~~~~~~~~~~----~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~------~~~r~~~~~~~~-~~~-iyv~GG 302 (400)
. -.+++.. ++..+++|+. ++ .+..||..+.+ .+..+ .....-.++... ++. +++.|+
T Consensus 211 ~--v~~~~~~~~~~~~~~l~~~~~---dg----~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 279 (357)
T 3i2n_A 211 G--VCSLEFDRKDISMNKLVATSL---EG----KFHVFDMRTQH--PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG 279 (357)
T ss_dssp C--EEEEEESCSSSSCCEEEEEES---TT----EEEEEEEEEEE--TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred c--eEEEEcCCCCCCCCEEEEECC---CC----eEEEEeCcCCC--cccceeeeccCCCcCCEEEEEECCCCCcEEEEEe
Confidence 2 1222322 5667777776 43 67788765432 11111 111112223333 455 677776
Q ss_pred cCCCCCCCCeEEEEECCCC
Q psy2979 303 WHASTENTNRVECYHIAEN 321 (400)
Q Consensus 303 ~~~~~~~~~~v~~yd~~~~ 321 (400)
. ...+..||..+.
T Consensus 280 ~------dg~i~iwd~~~~ 292 (357)
T 3i2n_A 280 G------AGGLHLWKYEYP 292 (357)
T ss_dssp T------TSEEEEEEEECC
T ss_pred C------CCcEEEeecCCC
Confidence 5 456777776543
No 223
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.60 E-value=1.2 Score=39.97 Aligned_cols=139 Identities=14% Similarity=0.063 Sum_probs=69.4
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc-E
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP-A 240 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~-~ 240 (400)
.....+..+|..+++....-..+.+......... ++.+++.|+.+ ..+..||..+.+-... +....... +
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~d~~~~~~~~~--~~~~~~~v~~ 191 (408)
T 4a11_B 119 SFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG-----PKVQLCDLKSGSCSHI--LQGHRQEILA 191 (408)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS-----SSEEEEESSSSCCCEE--ECCCCSCEEE
T ss_pred eCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC-----CeEEEEeCCCcceeee--ecCCCCcEEE
Confidence 5556788899887664433332222111111111 33466666654 3588889876643211 11111111 2
Q ss_pred EEEe-CC-EEEEEcCccccCCCCcceEEEEeCCCCc--eeeccC------------CCCCceeeeEEEE--CCeEEEEcC
Q psy2979 241 VVAH-EG-MLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAP------------MLIPRSGAAICAL--DSCIYVLGG 302 (400)
Q Consensus 241 ~~~~-~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~------------~~~~r~~~~~~~~--~~~iyv~GG 302 (400)
++.. ++ .+++.|+. ++ .+..||..+.. ...+.. ..........+.. ++..++.|+
T Consensus 192 ~~~~~~~~~ll~~~~~---dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 192 VSWSPRYDYILATASA---DS----RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp EEECSSCTTEEEEEET---TS----CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred EEECCCCCcEEEEEcC---CC----cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 2222 33 37777777 44 68888886543 111100 0111111122222 566677776
Q ss_pred cCCCCCCCCeEEEEECCCCe
Q psy2979 303 WHASTENTNRVECYHIAENT 322 (400)
Q Consensus 303 ~~~~~~~~~~v~~yd~~~~~ 322 (400)
. ...+..||..+.+
T Consensus 265 ~------dg~i~vwd~~~~~ 278 (408)
T 4a11_B 265 T------DNRMRLWNSSNGE 278 (408)
T ss_dssp T------TSCEEEEETTTCC
T ss_pred C------CCeEEEEECCCCc
Confidence 5 4578899988765
No 224
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.57 E-value=1.9 Score=42.04 Aligned_cols=210 Identities=15% Similarity=0.095 Sum_probs=122.2
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEE--ECC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM--LDG 199 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~--~~~ 199 (400)
.++...++....-....+++......++++. ++. ||+. .....++.+++.....+.+..... ..-.++++ .++
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~-~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGL-DYPEGMAVDWLGK 92 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSC-SCCCEEEEETTTT
T ss_pred CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCC-CCcceEEEEeCCC
Confidence 3567777766554433333333344556554 456 8988 445688899988766555433221 11123444 478
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEc--cCCCCcccccEEEEe--CCEEEEEc-CccccCCCCcceEEEEeCCCCc
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYI--EPMKLAVTSPAVVAH--EGMLYVTG-GAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~--~~l~~~~~~~~~~~~--~~~iyv~G-G~~~~~~~~~~~v~~yd~~~~~ 274 (400)
+||+.-. ....++++++....-..+ ..+..|+ ++++. ++.||+.- |. ...|++.++....
T Consensus 93 ~LY~tD~-----~~~~I~v~~~dG~~~~~l~~~~l~~P~---~iavdp~~G~lY~tD~g~-------~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 93 NLYWADT-----GTNRIEVSKLDGQHRQVLVWKDLDSPR---ALALDPAEGFMYWTEWGG-------KPKIDRAAMDGSE 157 (628)
T ss_dssp EEEEEET-----TTTEEEEEETTSTTCEEEECSSCCCEE---EEEEETTTTEEEEEECSS-------SCEEEEEETTSCS
T ss_pred EEEEEEC-----CCCEEEEEecCCCcEEEEEeCCCCCcc---cEEEccCCCeEEEeCCCC-------CCEEEEEeCCCCc
Confidence 9999733 235789999876543333 2333332 44443 78999985 32 3479999887665
Q ss_pred eeecc-CCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc-CCcCccCcceEEEECCEEEEEcC
Q psy2979 275 WQDLA-PMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKS-PMKEKRYRPGIAVIDGKIYVLGG 350 (400)
Q Consensus 275 W~~~~-~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~lyv~GG 350 (400)
-+.+. .+..| .+++.- +++||+.... .+.++++|+....=+.+. .++ ...++++.+++||+.--
T Consensus 158 ~~~l~~~~~~P---~GlalD~~~~~LY~aD~~------~~~I~~~d~dG~~~~v~~~~l~---~P~glav~~~~ly~tD~ 225 (628)
T 4a0p_A 158 RTTLVPNVGRA---NGLTIDYAKRRLYWTDLD------TNLIESSNMLGLNREVIADDLP---HPFGLTQYQDYIYWTDW 225 (628)
T ss_dssp CEEEECSCSSE---EEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEECCS---CEEEEEEETTEEEEEET
T ss_pred eEEEECCCCCc---ceEEEccccCEEEEEECC------CCEEEEEcCCCCceEEeeccCC---CceEEEEECCEEEEecC
Confidence 54443 23222 233333 6899998754 678999998654323332 222 23467777899999753
Q ss_pred ccCCCCCCCeEEEEECCCC
Q psy2979 351 EEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 351 ~~~~~~~~~~v~~yd~~~~ 369 (400)
. ...|+++|..++
T Consensus 226 ~------~~~I~~~dk~tg 238 (628)
T 4a0p_A 226 S------RRSIERANKTSG 238 (628)
T ss_dssp T------TTEEEEEETTTC
T ss_pred C------CCEEEEEECCCC
Confidence 2 245666665443
No 225
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=95.56 E-value=2.1 Score=42.41 Aligned_cols=235 Identities=10% Similarity=-0.064 Sum_probs=110.6
Q ss_pred ceEEEEEcCCC---ceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcce----------
Q psy2979 125 RSVEGFCVKTK---VWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFD---------- 190 (400)
Q Consensus 125 ~~~~~yd~~~~---~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~---------- 190 (400)
..++.+|..++ +..++.... ......+.. ++. ..++.....++.+|..+++...+........
T Consensus 129 ~~i~~~d~~~~~~~~~~~l~~~~--~~~~~~~~SPDG~-~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~ 205 (741)
T 2ecf_A 129 GELYLYDLKQEGKAAVRQLTHGE--GFATDAKLSPKGG-FVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVAD 205 (741)
T ss_dssp TEEEEEESSSCSTTSCCBCCCSS--SCEEEEEECTTSS-EEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHH
T ss_pred CcEEEEECCCCCcceEEEcccCC--cccccccCCCCCC-EEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeee
Confidence 57889998877 544443221 112223333 455 3344345688999988877665543221100
Q ss_pred -----eeeEEE-ECCEEEEEcccCCC----------------------------CCCCeEEEEeCCC-CceEEccCC-CC
Q psy2979 191 -----VSGIAM-LDGFVYAVGGWDGS----------------------------CRLDSVERYDPTK-NEWSYIEPM-KL 234 (400)
Q Consensus 191 -----~~~~~~-~~~~iyv~GG~~~~----------------------------~~~~~v~~yd~~~-~~W~~~~~l-~~ 234 (400)
..+.+. -+++.++++..++. .....++.+|..+ ++-..+... ..
T Consensus 206 ~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 285 (741)
T 2ecf_A 206 EEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQ 285 (741)
T ss_dssp HHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCS
T ss_pred eccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCc
Confidence 011222 14443333322211 1122678889888 765544321 11
Q ss_pred ccc-ccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCC----ceeeeEEEECCeEEEEcCcCCCCCC
Q psy2979 235 AVT-SPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIP----RSGAAICALDSCIYVLGGWHASTEN 309 (400)
Q Consensus 235 ~~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~----r~~~~~~~~~~~iyv~GG~~~~~~~ 309 (400)
... .....--+..|++.... .+.....++.+|+.+.+...+...... ........-++++++.+..++
T Consensus 286 ~~~~~~~~~pDg~~l~~~~~~---~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g---- 358 (741)
T 2ecf_A 286 DIYLARVNWRDPQHLSFQRQS---RDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTG---- 358 (741)
T ss_dssp SEEEEEEEEEETTEEEEEEEE---TTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTS----
T ss_pred ceEEEEEEeCCCCEEEEEEec---ccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCC----
Confidence 111 11112223345444321 111146799999988876655321111 011222233677666665432
Q ss_pred CCeEEEEECCCCeEEEccCCcCccCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 310 TNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 310 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
...++.+|.... ...+...... ......+ ++ .|++.+.. ++ .....+|..+.....-+.+
T Consensus 359 ~~~l~~~~~~~~-~~~l~~~~~~--v~~~~~~s~dg~~l~~~~~~-~~-~~~~~l~~~~~~g~~~~~l 421 (741)
T 2ecf_A 359 FQHLYRIDSKGK-AAALTHGNWS--VDELLAVDEKAGLAYFRAGI-ES-ARESQIYAVPLQGGQPQRL 421 (741)
T ss_dssp SCEEEEECSSSC-EEESCCSSSC--EEEEEEEETTTTEEEEEECS-SC-TTCBEEEEEETTCCCCEEC
T ss_pred ccEEEEEcCCCC-eeeeeecceE--EEeEeEEeCCCCEEEEEEeC-CC-CceEEEEEEEcCCCCeeec
Confidence 457999997766 6555432211 1122112 44 56666543 21 1234566666544433333
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.56 E-value=2 Score=42.28 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=64.1
Q ss_pred ceEEEEEcCCCc--eEEccCCccc--------ceeeeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccC-CCC--cc
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFA--------ISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGS-LKF--DF 189 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~--------~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~-~~~--~r 189 (400)
..+..+|..+++ |+.-...+.. ....+.++.++. ||+......++.+|..+++ |+.-.. -.. ..
T Consensus 87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~ 165 (677)
T 1kb0_A 87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGK-VYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLT 165 (677)
T ss_dssp GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTE-EEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCB
T ss_pred CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCE-EEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcc
Confidence 478899998885 8754332211 112345666777 9988666789999998876 775432 110 11
Q ss_pred eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--eEEc
Q psy2979 190 DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE--WSYI 229 (400)
Q Consensus 190 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 229 (400)
...+-++.++.+|+..+.........+..||..+++ |+.-
T Consensus 166 ~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 166 ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred cccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 222344568888875442222234679999999875 7664
No 227
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=95.54 E-value=1.1 Score=39.24 Aligned_cols=195 Identities=16% Similarity=0.149 Sum_probs=102.5
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCC------------------CcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEE
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLK------------------FDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERY 219 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~------------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 219 (400)
+|+-.....++.||+.++++....... ....-.+++.. ++.|||.... ..+.+|
T Consensus 33 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~------~~i~~~ 106 (322)
T 2fp8_A 33 FYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY------YHLSVV 106 (322)
T ss_dssp EEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT------TEEEEE
T ss_pred EEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC------CCEEEE
Confidence 343344467888888877665443110 00122345544 5789987331 248889
Q ss_pred eCCCCceEEccCCCCc---ccccEEEE-e-CCEEEEEcCccccC----------CCCcceEEEEeCCCCceeecc-CCCC
Q psy2979 220 DPTKNEWSYIEPMKLA---VTSPAVVA-H-EGMLYVTGGAILED----------GDGIEQVQRYNPKVNQWQDLA-PMLI 283 (400)
Q Consensus 220 d~~~~~W~~~~~l~~~---~~~~~~~~-~-~~~iyv~GG~~~~~----------~~~~~~v~~yd~~~~~W~~~~-~~~~ 283 (400)
|+.+++.+.+...... ..-..+++ - +|.||+........ +.....+++||+.+.+.+.+. .+..
T Consensus 107 d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~ 186 (322)
T 2fp8_A 107 GSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHV 186 (322)
T ss_dssp CTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESC
T ss_pred eCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCcc
Confidence 9887766555322111 11122333 3 67899974320000 001357999999877765442 2222
Q ss_pred CceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCC---CeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCC-
Q psy2979 284 PRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIAE---NTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWD- 355 (400)
Q Consensus 284 ~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~---~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~- 355 (400)
| .+++.- ++ .||+.... ...+++|++.. ...+.+..++. +....+ +|.|||.... ...
T Consensus 187 p---~gia~~~dg~~lyv~d~~------~~~I~~~~~~~~~~~~~~~~~~~~g----P~gi~~d~~G~l~va~~~-~~~~ 252 (322)
T 2fp8_A 187 P---GGAEVSADSSFVLVAEFL------SHQIVKYWLEGPKKGTAEVLVKIPN----PGNIKRNADGHFWVSSSE-ELDG 252 (322)
T ss_dssp C---CEEEECTTSSEEEEEEGG------GTEEEEEESSSTTTTCEEEEEECSS----EEEEEECTTSCEEEEEEE-ETTS
T ss_pred C---cceEECCCCCEEEEEeCC------CCeEEEEECCCCcCCccceEEeCCC----CCCeEECCCCCEEEEecC-cccc
Confidence 2 233333 34 58887543 46899999875 23444333321 233344 5789987532 100
Q ss_pred ----CCCCeEEEEECCCCcEEEe
Q psy2979 356 ----GYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 356 ----~~~~~v~~yd~~~~~W~~~ 374 (400)
.....|.+||+....-..+
T Consensus 253 ~~~~~~~~~v~~~d~~G~~~~~~ 275 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDEFGNILEVI 275 (322)
T ss_dssp STTSCEEEEEEEECTTSCEEEEE
T ss_pred cccCCCccEEEEECCCCCEEEEE
Confidence 0124689999976544444
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=95.53 E-value=2.1 Score=42.27 Aligned_cols=236 Identities=12% Similarity=0.034 Sum_probs=119.8
Q ss_pred cceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEee-------------cCEEEEEECCCCCe--EEccCCCC-
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDI-------------VDIVYVAASMHKIL--HSLGSLKF- 187 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~-------------~~~~~~yd~~~~~w--~~~~~~~~- 187 (400)
..++.++|..+++..... ++..+ ..+++..+++.||.... ...++.++..+..- ..+-..+.
T Consensus 154 ~~~i~v~dl~tg~~~~~~-~~~~k-~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~ 231 (693)
T 3iuj_A 154 WREIHLMDVESKQPLETP-LKDVK-FSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPA 231 (693)
T ss_dssp EEEEEEEETTTCSEEEEE-EEEEE-SCCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGG
T ss_pred eEEEEEEECCCCCCCccc-cCCce-eccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCC
Confidence 357888999888865431 12111 12223236654555521 13477777655432 11111111
Q ss_pred -cceeeeEEEE-CCE-EEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCc
Q psy2979 188 -DFDVSGIAML-DGF-VYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGI 262 (400)
Q Consensus 188 -~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 262 (400)
+....+.... +++ |++...... ..+.++.+|..+. +|..+.+-...... .....++.+|+.... ++. .
T Consensus 232 ~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~---~~~-~ 304 (693)
T 3iuj_A 232 QHHRYVGATVTEDDRFLLISAANST--SGNRLYVKDLSQENAPLLTVQGDLDADVS-LVDNKGSTLYLLTNR---DAP-N 304 (693)
T ss_dssp GCCSEEEEEECTTSCEEEEEEESSS--SCCEEEEEETTSTTCCCEEEECSSSSCEE-EEEEETTEEEEEECT---TCT-T
T ss_pred CCeEEEEEEEcCCCCEEEEEEccCC--CCcEEEEEECCCCCCceEEEeCCCCceEE-EEeccCCEEEEEECC---CCC-C
Confidence 2222222222 444 444332221 1257889998766 67776542222221 234568899988654 322 3
Q ss_pred ceEEEEeCCCC---ceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEE
Q psy2979 263 EQVQRYNPKVN---QWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIA 339 (400)
Q Consensus 263 ~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 339 (400)
..++.+|..+. .|+.+.+-..... .....++.|++..-.++ ...++.+|...+....++ +|.........
T Consensus 305 ~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g----~~~l~~~d~~g~~~~~l~-~p~~~~~~~~~ 377 (693)
T 3iuj_A 305 RRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDA----TARVEQFDYEGKRVREVA-LPGLGSVSGFN 377 (693)
T ss_dssp CEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETT----EEEEEEECTTSCEEEEEC-CSSSSEEEECC
T ss_pred CEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECC----eeEEEEEECCCCeeEEee-cCCCceEEeee
Confidence 57899988763 4887654333222 44444666665543221 457899998876655553 22211100000
Q ss_pred E-E-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCC
Q psy2979 340 V-I-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP 378 (400)
Q Consensus 340 ~-~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 378 (400)
. . ++.+++... +...-..++.||..+++++.+...+
T Consensus 378 ~~~d~~~l~~~~s---s~~tP~~l~~~d~~~g~~~~l~~~~ 415 (693)
T 3iuj_A 378 GKHDDPALYFGFE---NYAQPPTLYRFEPKSGAISLYRASA 415 (693)
T ss_dssp CCTTCSCEEEEEE---CSSSCCEEEEECTTTCCEEEEECCC
T ss_pred cCCCCCEEEEEec---CCCCCCEEEEEECCCCeEEEEEeCC
Confidence 0 1 234444321 1123468999999998888775433
No 229
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=95.52 E-value=1.2 Score=39.30 Aligned_cols=209 Identities=10% Similarity=0.038 Sum_probs=114.4
Q ss_pred ceEEEEEcCCCc--eEEccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCCCC---eEEccCCCCcceeeeEEE
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMHKI---LHSLGSLKFDFDVSGIAM 196 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~~~---w~~~~~~~~~r~~~~~~~ 196 (400)
.++...++.... ...+ ++......++... ++. ||.. ...+.++.+++.... +.....+..| .++++
T Consensus 13 ~~I~~i~l~~~~~~~~~~--~~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p---~glav 86 (318)
T 3sov_A 13 RDLRLVDATNGKENATIV--VGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP---DGLAC 86 (318)
T ss_dssp EEEEEEETTCTTSCCEEE--EEEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCC---CEEEE
T ss_pred CeEEEEECCCCceEEEEE--ecCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCc---cEEEE
Confidence 356667766543 1111 1111222334333 456 8888 445678889887652 2111122211 23333
Q ss_pred --ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEc--cCCCCcccccEEEE--eCCEEEEEc-CccccCCCCcceEEEEe
Q psy2979 197 --LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI--EPMKLAVTSPAVVA--HEGMLYVTG-GAILEDGDGIEQVQRYN 269 (400)
Q Consensus 197 --~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~--~~l~~~~~~~~~~~--~~~~iyv~G-G~~~~~~~~~~~v~~yd 269 (400)
.++.||+.-.. ...++++++....-..+ ..+..++ +.++ .++.||+.. |. ...+++++
T Consensus 87 d~~~g~ly~~d~~-----~~~I~~~~~dG~~~~~l~~~~~~~P~---giavdp~~g~ly~td~~~-------~~~I~r~~ 151 (318)
T 3sov_A 87 DWLGEKLYWTDSE-----TNRIEVSNLDGSLRKVLFWQELDQPR---AIALDPSSGFMYWTDWGE-------VPKIERAG 151 (318)
T ss_dssp ETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSSCSSEE---EEEEEGGGTEEEEEECSS-------SCEEEEEE
T ss_pred EcCCCeEEEEECC-----CCEEEEEECCCCcEEEEEeCCCCCcc---EEEEeCCCCEEEEEecCC-------CCEEEEEE
Confidence 37899987432 35788999876543333 2232222 3333 368999985 32 34799999
Q ss_pred CCCCceeecc--CCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEE
Q psy2979 270 PKVNQWQDLA--PMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKI 345 (400)
Q Consensus 270 ~~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l 345 (400)
+....-+.+. .+..| .+++.- ++.||+.... ...++++|+....-+.+..- ....-.++++.++.+
T Consensus 152 ~dG~~~~~~~~~~l~~P---nglavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~~~-~~~~P~glav~~~~l 221 (318)
T 3sov_A 152 MDGSSRFIIINSEIYWP---NGLTLDYEEQKLYWADAK------LNFIHKSNLDGTNRQAVVKG-SLPHPFALTLFEDIL 221 (318)
T ss_dssp TTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECS-CCSCEEEEEEETTEE
T ss_pred cCCCCeEEEEECCCCCc---cEEEEeccCCEEEEEECC------CCEEEEEcCCCCceEEEecC-CCCCceEEEEeCCEE
Confidence 8754433331 22222 234443 7899998754 67899999875433333221 112234566778999
Q ss_pred EEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 346 YVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 346 yv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
|+.--. ...|.++|+.+++
T Consensus 222 ywtd~~------~~~V~~~~~~~G~ 240 (318)
T 3sov_A 222 YWTDWS------THSILACNKYTGE 240 (318)
T ss_dssp EEEETT------TTEEEEEETTTCC
T ss_pred EEEecC------CCeEEEEECCCCC
Confidence 998422 3578888886543
No 230
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=95.51 E-value=0.87 Score=37.70 Aligned_cols=145 Identities=12% Similarity=0.118 Sum_probs=80.0
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc-e--EEc----cCCCCcccccEEEE-eCCEEEEEcCccccCCCCcce
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE-W--SYI----EPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W--~~~----~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 264 (400)
+++..++++|++=| ..+|+++..... . ..+ +.+|.. -..+... .++++|++-|. .
T Consensus 35 Ai~~~~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~~-IDAA~~~~~~~k~yfFkG~---------~ 97 (218)
T 1gen_A 35 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPEK-IDAVYEAPQEEKAVFFAGN---------E 97 (218)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCSC-CSEEEEETTTTEEEEEETT---------E
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCCccCCCEEHHHhcCCCCCC-ccEEEEECCCCEEEEEeCC---------E
Confidence 45567899999977 446666554321 1 111 234432 2222222 36899999887 7
Q ss_pred EEEEeCCCCce---eeccC--CCCC-ceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-----cc-CC-
Q psy2979 265 VQRYNPKVNQW---QDLAP--MLIP-RSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAENTWEY-----KS-PM- 329 (400)
Q Consensus 265 v~~yd~~~~~W---~~~~~--~~~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-----~~-~~- 329 (400)
.|+||..+..- ..+.. +|.. ..--++.. .++++|++-|. ..++||..+++-.. +. ..
T Consensus 98 yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG~--------~ywr~d~~~~~v~~gyPr~i~~~w~ 169 (218)
T 1gen_A 98 YWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD--------KFWRYNEVKKKMDPGFPKLIADAWN 169 (218)
T ss_dssp EEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT--------EEEEEETTTTEECSSCCEEHHHHSS
T ss_pred EEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEECC--------EEEEEECccccccCCCCcchhhccC
Confidence 89998531100 01111 2211 12233333 36899999864 79999998764221 11 01
Q ss_pred cCccCcceEEEEC--CEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 330 KEKRYRPGIAVID--GKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 330 ~~~~~~~~~~~~~--~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
..+...-++...+ |++|++-|. ..|+||..+..
T Consensus 170 g~p~~idaAf~~~~~g~~YfFkg~--------~y~~~~~~~~~ 204 (218)
T 1gen_A 170 AIPDNLDAVVDLQGGGHSYFFKGA--------YYLKLENQSLK 204 (218)
T ss_dssp SCCSSCSEEEECTTTCEEEEEETT--------EEEEEETTEEE
T ss_pred CCCCCCCEEEEEcCCCcEEEEECC--------EEEEEECCcee
Confidence 1122223344444 899999875 67999987654
No 231
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.50 E-value=2.1 Score=42.09 Aligned_cols=104 Identities=12% Similarity=0.092 Sum_probs=63.4
Q ss_pred ceEEEEEcCCCc--eEEccCCcccc--------eeeeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCC--cce
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFAI--------SKHGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKF--DFD 190 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~~--------~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~--~r~ 190 (400)
..+..+|..+++ |+.-...+... ...+.++.++. ||+......++.+|..+++ |+....-+. ...
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~ 154 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDK-VYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSI 154 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTE-EEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBC
T ss_pred CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCE-EEEEcCCCEEEEEECCCCCEeeeeccCCCCCccee
Confidence 468899998886 87643322110 11234556777 8887666789999998876 775432111 122
Q ss_pred eeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--eEEc
Q psy2979 191 VSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE--WSYI 229 (400)
Q Consensus 191 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 229 (400)
..+-++.++.+|+..+.........+..||+.+++ |+.-
T Consensus 155 ~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 155 TGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp CSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred cCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 22344568888874332222234579999999875 8763
No 232
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=95.49 E-value=1.5 Score=40.15 Aligned_cols=199 Identities=12% Similarity=0.022 Sum_probs=109.8
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCC----ceEEc-c-CCCCc
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKN----EWSYI-E-PMKLA 235 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~~-~-~l~~~ 235 (400)
...+.+...|+....+..+.+ ..+.-.+++.. ++.||+.--. ...+.++++... ....+ . .+..
T Consensus 89 ~~~~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~-----~~~I~~~~~~g~~~~~~~~~~~~~~~~~- 160 (400)
T 3p5b_L 89 TNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQA- 160 (400)
T ss_dssp EETTEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETT-----TTEEEEEEC------CCCEEEECSSCSC-
T ss_pred eccceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecC-----CCeEEEEEcccCCCCCcceEEEeCCCCC-
Confidence 445678888888777765533 22233344443 6899987432 256888888752 22222 2 1221
Q ss_pred ccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEEE--CCeEEEEcCcCCCCCC
Q psy2979 236 VTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICAL--DSCIYVLGGWHASTEN 309 (400)
Q Consensus 236 ~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 309 (400)
-.++++ .++.||+.-.. ...++++|+....-..+. .+..|+ ++++- ++.||+..-..
T Consensus 161 --p~glavD~~~~~lY~~d~~-------~~~I~~~~~~g~~~~~l~~~~~~~P~---~iavdp~~g~ly~td~~~----- 223 (400)
T 3p5b_L 161 --PDGLAVDWIHSNIYWTDSV-------LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWGT----- 223 (400)
T ss_dssp --EEEEEEETTTTEEEEEETT-------TTEEEEECTTTCSEEEEEECSSCCEE---EEEEETTTTEEEEEECSS-----
T ss_pred --cccEEEEecCCceEEEECC-------CCeEEEEeCCCCceEEEEeCCCCCcc---eEEEecccCeEEEEeCCC-----
Confidence 123344 47999998655 357999998876654443 333332 33443 68899876211
Q ss_pred CCeEEEEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC-CCCcee
Q psy2979 310 TNRVECYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS-ARSWLG 385 (400)
Q Consensus 310 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~ 385 (400)
...++++++....=..+.. .....+...++ +++||+.-.. .+.|+++|+....-+.+...+. -..-.+
T Consensus 224 ~~~I~~~~~dG~~~~~~~~--~~l~~P~glavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~~~~~~l~~P~g 295 (400)
T 3p5b_L 224 PAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFS 295 (400)
T ss_dssp SCCEEEEETTSCSCEEEEC--SSCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCCCEEEEECSSTTSSEEE
T ss_pred CCEEEEEeCCCCccEEEEE--CCCCceEEEEEEeCCCEEEEEECC------CCEEEEEeCCCCccEEEEeCCCCCCCCEE
Confidence 3579999987543332211 11123333333 6899998543 4689999987654444432111 122356
Q ss_pred eEEEcccccc
Q psy2979 386 CVPLQIHKSQ 395 (400)
Q Consensus 386 ~~~~~~~~~~ 395 (400)
+++.++..|+
T Consensus 296 l~v~~~~lyw 305 (400)
T 3p5b_L 296 LAVFEDKVFW 305 (400)
T ss_dssp EEEETTEEEE
T ss_pred EEEeCCEEEE
Confidence 6665555444
No 233
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=95.42 E-value=0.82 Score=43.97 Aligned_cols=221 Identities=11% Similarity=-0.060 Sum_probs=109.6
Q ss_pred ceEEEEEc--CCCceEEccCCcccceeeeEEEECCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEE
Q psy2979 125 RSVEGFCV--KTKVWKTLSCLPFAISKHGLVVSGRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFV 201 (400)
Q Consensus 125 ~~~~~yd~--~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~i 201 (400)
..++..+. .... ..+...+..+ ......++..++++ ........||..+++...+...+. ... ...-+++.
T Consensus 90 ~~l~~~~~~~~g~~-~~l~~~~~~~--~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~-~~spDG~~ 163 (582)
T 3o4h_A 90 HALFKVNTSRPGEE-QRLEAVKPMR--ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGF-VSDIRGDL 163 (582)
T ss_dssp EEEEEEETTSTTCC-EECTTSCSBE--EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEE-EEEEETTE
T ss_pred eEEEEEeccCCCcc-ccccCCCCce--eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceE-EECCCCCE
Confidence 35556665 3322 2444333222 22233344324444 444555688888877666554332 222 22235554
Q ss_pred EEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCC
Q psy2979 202 YAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM 281 (400)
Q Consensus 202 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 281 (400)
.++++.+.. ....++.+|+.++++..+..-+... ..-+-.-+|+.++.+.. ++ ...++.+|..+.+...+...
T Consensus 164 la~~~~~~~-~~~~i~~~d~~~g~~~~l~~~~~~~-~~~~~SpDG~~l~~~~~---~~--~~~i~~~d~~~~~~~~~~~~ 236 (582)
T 3o4h_A 164 IAGLGFFGG-GRVSLFTSNLSSGGLRVFDSGEGSF-SSASISPGMKVTAGLET---AR--EARLVTVDPRDGSVEDLELP 236 (582)
T ss_dssp EEEEEEEET-TEEEEEEEETTTCCCEEECCSSCEE-EEEEECTTSCEEEEEEC---SS--CEEEEEECTTTCCEEECCCS
T ss_pred EEEEEEcCC-CCeEEEEEcCCCCCceEeecCCCcc-ccceECCCCCEEEEccC---CC--eeEEEEEcCCCCcEEEccCC
Confidence 444443311 1245899999999888775433222 11112235554444333 32 34799999998887733222
Q ss_pred CCCceeee-------EEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCC
Q psy2979 282 LIPRSGAA-------ICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGW 354 (400)
Q Consensus 282 ~~~r~~~~-------~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~ 354 (400)
........ ...-++++++.+.. ...+..|+. ++... .+.... ..+..-++++++.++. .
T Consensus 237 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~------~g~~~l~~~--g~~~~---~~~~~v-~~~~~sdg~~l~~~s~-~- 302 (582)
T 3o4h_A 237 SKDFSSYRPTAITWLGYLPDGRLAVVARR------EGRSAVFID--GERVE---APQGNH-GRVVLWRGKLVTSHTS-L- 302 (582)
T ss_dssp CSHHHHHCCSEEEEEEECTTSCEEEEEEE------TTEEEEEET--TEEEC---CCSSEE-EEEEEETTEEEEEEEE-T-
T ss_pred CcChhhhhhccccceeEcCCCcEEEEEEc------CCcEEEEEE--CCeec---cCCCce-EEEEecCCEEEEEEcC-C-
Confidence 11111111 02336677777755 346777777 54433 122111 1222228888877654 2
Q ss_pred CCCCCeEEEEECCCCcEEEe
Q psy2979 355 DGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 355 ~~~~~~v~~yd~~~~~W~~~ 374 (400)
.....++.+|..+ +.+.+
T Consensus 303 -~~p~~l~~~d~~~-~~~~l 320 (582)
T 3o4h_A 303 -STPPRIVSLPSGE-PLLEG 320 (582)
T ss_dssp -TEEEEEEEETTCC-EEECC
T ss_pred -CCCCeEEEEcCCC-ceEEE
Confidence 2235678888765 44443
No 234
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.39 E-value=1.2 Score=40.40 Aligned_cols=145 Identities=16% Similarity=0.125 Sum_probs=76.3
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCcee
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 276 (400)
+++.++.|+.+ ..+..||..+++-...-.-.. ..-.+++. -++..++.|+. ++ .+..||..+.+..
T Consensus 134 dg~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~---d~----~v~iwd~~~~~~~ 200 (393)
T 1erj_A 134 DGKFLATGAED-----RLIRIWDIENRKIVMILQGHE-QDIYSLDYFPSGDKLVSGSG---DR----TVRIWDLRTGQCS 200 (393)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEET---TS----EEEEEETTTTEEE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCcEEEEEccCC-CCEEEEEEcCCCCEEEEecC---CC----cEEEEECCCCeeE
Confidence 56677777765 358889988875433211111 11112222 25666667766 43 7889998877644
Q ss_pred eccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-ccCCc---Ccc-CcceEEEE--CCEEEE
Q psy2979 277 DLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEY-KSPMK---EKR-YRPGIAVI--DGKIYV 347 (400)
Q Consensus 277 ~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~---~~~-~~~~~~~~--~~~lyv 347 (400)
..-..... ...++.. ++.+++.|+. ...+..||..++.-.. +.... ... .....+.+ +++.++
T Consensus 201 ~~~~~~~~--v~~~~~~~~~~~~l~~~s~------d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 201 LTLSIEDG--VTTVAVSPGDGKYIAAGSL------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp EEEECSSC--EEEEEECSTTCCEEEEEET------TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred EEEEcCCC--cEEEEEECCCCCEEEEEcC------CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence 32222111 1222222 5678888876 4578899988776432 21111 111 11122333 577777
Q ss_pred EcCccCCCCCCCeEEEEECCCC
Q psy2979 348 LGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 348 ~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
.|+. + ..|.+||..+.
T Consensus 273 s~s~-d-----~~v~~wd~~~~ 288 (393)
T 1erj_A 273 SGSL-D-----RSVKLWNLQNA 288 (393)
T ss_dssp EEET-T-----SEEEEEEC---
T ss_pred EEeC-C-----CEEEEEECCCC
Confidence 7776 2 46788887653
No 235
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.39 E-value=1.5 Score=39.69 Aligned_cols=187 Identities=14% Similarity=0.047 Sum_probs=88.6
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcc
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDF 189 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r 189 (400)
..++.|+.+ ..+.++|..+++-...-.- ....-.+++.. ++..++.......+..+|..+++....-....
T Consensus 136 ~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-- 207 (393)
T 1erj_A 136 KFLATGAED-----RLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED-- 207 (393)
T ss_dssp SEEEEEETT-----SCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS--
T ss_pred CEEEEEcCC-----CeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC--
Confidence 345556554 4678888877654322111 11112233333 33313333555678888988765432221111
Q ss_pred eeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC-CC---Ccccc--cEEEE-eCCEEEEEcCccccCCC
Q psy2979 190 DVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP-MK---LAVTS--PAVVA-HEGMLYVTGGAILEDGD 260 (400)
Q Consensus 190 ~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-l~---~~~~~--~~~~~-~~~~iyv~GG~~~~~~~ 260 (400)
...+++.. ++.+++.|+.+ ..+..||..+++-...-. .. ..... .+++. -++..++.|+. ++
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~---d~- 278 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL---DR- 278 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET---TS-
T ss_pred CcEEEEEECCCCCEEEEEcCC-----CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC---CC-
Confidence 11122222 56777778765 358889988775432211 11 11111 11222 26677777777 44
Q ss_pred CcceEEEEeCCCCceeeccCCC-----------CCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 261 GIEQVQRYNPKVNQWQDLAPML-----------IPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 261 ~~~~v~~yd~~~~~W~~~~~~~-----------~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
.+..||..+..-......+ ....-.+++.. ++..++.|+. ...+..||..+++-
T Consensus 279 ---~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~------D~~v~iwd~~~~~~ 344 (393)
T 1erj_A 279 ---SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK------DRGVLFWDKKSGNP 344 (393)
T ss_dssp ---EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET------TSEEEEEETTTCCE
T ss_pred ---EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC------CCeEEEEECCCCeE
Confidence 6888887543211110000 00001112222 5566666665 45789999887653
No 236
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=95.35 E-value=2.4 Score=41.81 Aligned_cols=237 Identities=10% Similarity=-0.030 Sum_probs=121.0
Q ss_pred cceEEEEEcCCCceEEccCCcc---c--ceeeeEEEE-CCeEEEEE--ee----cCEEEEEECCCCCeEEccCCCCccee
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPF---A--ISKHGLVVS-GRNTIYCL--DI----VDIVYVAASMHKILHSLGSLKFDFDV 191 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~---~--~~~~~~~~~-~~~~iyv~--~~----~~~~~~yd~~~~~w~~~~~~~~~r~~ 191 (400)
...++..+...++|..+.+.+. . ....+.+.. ++. ..++ .. ...++.+|..+++......++....
T Consensus 93 ~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~- 170 (695)
T 2bkl_A 93 KAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKY- 170 (695)
T ss_dssp SCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTT-
T ss_pred EEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccc-
Confidence 4566777776777877754331 1 111222333 555 3333 21 2579999999887641112221111
Q ss_pred eeEEEE-CCEEEEEcccCCC--------CCCCeEEEEeCCCCce--EEccCCCCc-ccccEE-EEeCCEEEEEcCccccC
Q psy2979 192 SGIAML-DGFVYAVGGWDGS--------CRLDSVERYDPTKNEW--SYIEPMKLA-VTSPAV-VAHEGMLYVTGGAILED 258 (400)
Q Consensus 192 ~~~~~~-~~~iyv~GG~~~~--------~~~~~v~~yd~~~~~W--~~~~~l~~~-~~~~~~-~~~~~~iyv~GG~~~~~ 258 (400)
...+.. +++.++++..+.. .....++.+++.+++- ..+...+.. ....+. ..-+|+..+++.. +
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~---~ 247 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYIL---R 247 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEE---E
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEe---C
Confidence 223333 5555555444322 2245688899887753 223222221 111222 2235554444333 2
Q ss_pred CCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe---EEEccCCcCccCc
Q psy2979 259 GDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT---WEYKSPMKEKRYR 335 (400)
Q Consensus 259 ~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~~~~~ 335 (400)
+.....++.+|..+..|..+..-..... ..+..++.+|+....+. . ...++.+|..+.. |..+-+.......
T Consensus 248 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~--~~~~~~g~l~~~s~~~~--~-~~~l~~~d~~~~~~~~~~~l~~~~~~~~l 322 (695)
T 2bkl_A 248 GWSENDVYWKRPGEKDFRLLVKGVGAKY--EVHAWKDRFYVLTDEGA--P-RQRVFEVDPAKPARASWKEIVPEDSSASL 322 (695)
T ss_dssp TTTEEEEEEECTTCSSCEEEEECSSCCE--EEEEETTEEEEEECTTC--T-TCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred CCCceEEEEEcCCCCceEEeecCCCceE--EEEecCCcEEEEECCCC--C-CCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence 1114578888877777887754322221 22225666666654322 2 4689999987664 7776543211112
Q ss_pred ceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 336 PGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 336 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
..+...++++++.... + ....++.+|+..+.-+.+
T Consensus 323 ~~~~~~~~~lv~~~~~-d---g~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 323 LSVSIVGGHLSLEYLK-D---ATSEVRVATLKGKPVRTV 357 (695)
T ss_dssp EEEEEETTEEEEEEEE-T---TEEEEEEEETTCCEEEEC
T ss_pred EEEEEECCEEEEEEEE-C---CEEEEEEEeCCCCeeEEe
Confidence 2334448888887654 2 245788898765544443
No 237
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=95.34 E-value=0.7 Score=42.95 Aligned_cols=173 Identities=12% Similarity=0.188 Sum_probs=98.5
Q ss_pred CCeEEEEEeecCEEEEEECCCCCeEEc--cCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--------
Q psy2979 156 GRNTIYCLDIVDIVYVAASMHKILHSL--GSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE-------- 225 (400)
Q Consensus 156 ~~~~iyv~~~~~~~~~yd~~~~~w~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-------- 225 (400)
++. +|++. .+..|.||..+++.... +.++ . --++...++++|++-| +..++||+.+++
T Consensus 158 ~~~-~yfFk-G~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG-------~~y~rfd~~~~~v~~gyPk~ 225 (460)
T 1qhu_A 158 DEG-ILFFQ-GNRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQG-------NQFLRFNPVSGEVPPGYPLD 225 (460)
T ss_dssp SSE-EEEEE-TTEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEET-------TEEEEECTTTCCCCTTCCEE
T ss_pred CCe-EEEEe-cccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEEC-------CEEEEEcCccCcccCCCCcc
Confidence 455 77664 35789999887654321 2222 2 2344445789999988 567888876543
Q ss_pred ----eEEccCCCC-------------------cccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceee--c-
Q psy2979 226 ----WSYIEPMKL-------------------AVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD--L- 278 (400)
Q Consensus 226 ----W~~~~~l~~-------------------~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~--~- 278 (400)
|..++.... ...--+++. .+|++|++-|. ..|++|...+.+.. +
T Consensus 226 is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~---------~yWR~~~~~~~~~p~~Is 296 (460)
T 1qhu_A 226 VRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS---------HYWRLDTNRDGWHSWPIA 296 (460)
T ss_dssp HHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT---------EEEECTTGGGCCCCEEGG
T ss_pred hhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC---------EEEEEecCCCCcCccchh
Confidence 222221100 011223333 57899999886 67888875543221 1
Q ss_pred ---cCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC----------CcCc--cCcceEEEE--
Q psy2979 279 ---APMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP----------MKEK--RYRPGIAVI-- 341 (400)
Q Consensus 279 ---~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~----------~~~~--~~~~~~~~~-- 341 (400)
+.+|. .--++...++++|++=|. .+++|+..++ .+..+. +|.. ...--++..
T Consensus 297 ~~WpglP~--~IDAAf~~~~~~yfFkG~--------~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~IDAA~~~~ 365 (460)
T 1qhu_A 297 HQWPQGPS--TVDAAFSWEDKLYLIQDT--------KVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAVDAAFVCP 365 (460)
T ss_dssp GTCTTSCS--SCSEEEEETTEEEEEETT--------EEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCCCEEECCT
T ss_pred hhccCCCC--CCcEEEEECCeEEEEeCC--------EEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCcccEEEEeC
Confidence 12232 233444558999999764 7999986532 222221 2211 112233332
Q ss_pred -CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 342 -DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 342 -~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
++++|++-|. ..|+||...
T Consensus 366 ~~~ktyfFkG~--------~ywryd~~~ 385 (460)
T 1qhu_A 366 GSSRLHIMAGR--------RLWWLDLKS 385 (460)
T ss_dssp TCCEEEEEETT--------EEEEEEGGG
T ss_pred CCCEEEEEECC--------EEEEEECCC
Confidence 5899999885 789999764
No 238
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.34 E-value=0.45 Score=47.14 Aligned_cols=118 Identities=16% Similarity=0.295 Sum_probs=74.0
Q ss_pred EEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCCC--------ceeeeEEEECCeEEEEcCcCCCCCCC
Q psy2979 241 VVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIP--------RSGAAICALDSCIYVLGGWHASTENT 310 (400)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~ 310 (400)
-++.++.||+.... ..++++|..+.+ |+.-...+.. ....+.++.+++||+... .
T Consensus 66 P~v~~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------d 130 (689)
T 1yiq_A 66 PIVVDGVMYTTGPF--------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------D 130 (689)
T ss_dssp CEEETTEEEEECGG--------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------T
T ss_pred CEEECCEEEEEcCC--------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------C
Confidence 35679999997654 368999987655 8865433211 112234567888888653 4
Q ss_pred CeEEEEECCCCe--EEEccC-CcC--ccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc--EEEe
Q psy2979 311 NRVECYHIAENT--WEYKSP-MKE--KRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEIM 374 (400)
Q Consensus 311 ~~v~~yd~~~~~--W~~~~~-~~~--~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~ 374 (400)
..+..+|..+++ |+.-.. -+. .....+-++.++.+|+..+. ........++.||+++++ |+.-
T Consensus 131 g~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~-~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 131 GRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGG-AEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp SEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBC-TTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCC-CccCCCCEEEEEECCCCcEEEEec
Confidence 579999998775 887543 111 11222345569999885432 212235689999999876 8764
No 239
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=95.32 E-value=2.6 Score=41.96 Aligned_cols=234 Identities=12% Similarity=0.028 Sum_probs=117.9
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEe---e-----------cCEEEEEECCCCCe--EEccCCC-C
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLD---I-----------VDIVYVAASMHKIL--HSLGSLK-F 187 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~---~-----------~~~~~~yd~~~~~w--~~~~~~~-~ 187 (400)
..+.++|..+++..... ++... ....+...++.|+... . ...++.++..++.- ..+-..+ .
T Consensus 189 ~~i~v~dl~tg~~~~~~-~~~~~-~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~ 266 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADE-LKWVK-FSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL 266 (741)
T ss_dssp EEEEEEETTTCCEEEEE-EEEEE-SCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred EEEEEEECCCCCCCCcc-CCCce-eccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC
Confidence 46888898888775431 11110 1122333223244441 1 23577777765431 1111111 1
Q ss_pred cceeeeEEE-ECCE-EEEEcccCCCCCCCeEEEEeCCCC--c-eEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCc
Q psy2979 188 DFDVSGIAM-LDGF-VYAVGGWDGSCRLDSVERYDPTKN--E-WSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGI 262 (400)
Q Consensus 188 ~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~v~~yd~~~~--~-W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 262 (400)
+....+... -+++ |++.. ..+......++.+|..+. + |..+.+-...... .+...++.||+.... ++. .
T Consensus 267 ~~~~~~~~~SpDG~~l~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~-~~~~dg~~l~~~s~~---~~~-~ 340 (741)
T 1yr2_A 267 PKRGHGASVSSDGRWVVITS-SEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD-FVDGVGDQLWFVSGD---GAP-L 340 (741)
T ss_dssp TTCEEEEEECTTSCEEEEEE-ECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE-EEEEETTEEEEEECT---TCT-T
T ss_pred CeEEEEEEECCCCCEEEEEE-EccCCCcceEEEEECCCCCCcccEEecCCCCceEE-EEeccCCEEEEEECC---CCC-C
Confidence 222222222 2554 44443 322223567899998877 6 8777543322222 223457778777543 211 3
Q ss_pred ceEEEEeCCC--CceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEE
Q psy2979 263 EQVQRYNPKV--NQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAV 340 (400)
Q Consensus 263 ~~v~~yd~~~--~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 340 (400)
..++.+|..+ ..|+.+-+-.... ...+...++.+++....++ ...++.+++..+.-..+. +|.... .....
T Consensus 341 ~~l~~~d~~~~~~~~~~l~~~~~~~-l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l~-~~~~~~-v~~~~ 413 (741)
T 1yr2_A 341 KKIVRVDLSGSTPRFDTVVPESKDN-LESVGIAGNRLFASYIHDA----KSQVLAFDLDGKPAGAVS-LPGIGS-ASGLS 413 (741)
T ss_dssp CEEEEEECSSSSCEEEEEECCCSSE-EEEEEEEBTEEEEEEEETT----EEEEEEEETTSCEEEECB-CSSSCE-EEEEE
T ss_pred CEEEEEeCCCCccccEEEecCCCCe-EEEEEEECCEEEEEEEECC----EEEEEEEeCCCCceeecc-CCCCeE-EEEee
Confidence 5799999887 5788875433221 2223334788887765432 457889997655444443 221111 11111
Q ss_pred E--CC-EEEEEcCccCCCCCCCeEEEEECCCCcEEEecC
Q psy2979 341 I--DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 341 ~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 376 (400)
. ++ .|++.... ...-..++.||..+++.+.+..
T Consensus 414 ~s~d~~~l~~~~ss---~~~P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 414 GRPGDRHAYLSFSS---FTQPATVLALDPATAKTTPWEP 449 (741)
T ss_dssp CCBTCSCEEEEEEE---TTEEEEEEEEETTTTEEEECSC
T ss_pred cCCCCCEEEEEEcC---CCCCCEEEEEECCCCcEEEEec
Confidence 1 33 34443211 1224579999999988777654
No 240
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=95.31 E-value=0.28 Score=40.90 Aligned_cols=99 Identities=9% Similarity=0.003 Sum_probs=59.7
Q ss_pred eCCEEEEEcCccccCCCCcceEEEEeCCC----Cceeec--------cCCCCC--c-eeeeEEE--ECCeEEEEcCcCCC
Q psy2979 244 HEGMLYVTGGAILEDGDGIEQVQRYNPKV----NQWQDL--------APMLIP--R-SGAAICA--LDSCIYVLGGWHAS 306 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~----~~W~~~--------~~~~~~--r-~~~~~~~--~~~~iyv~GG~~~~ 306 (400)
.++++|++-|. .+|+||..+ +....- +.+|.. . .--++.. .++++|++-|.
T Consensus 69 ~~g~~~fFkg~---------~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG~--- 136 (225)
T 3oyo_A 69 EASEAYVFSGN---------HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGN--- 136 (225)
T ss_dssp STTEEEEEETT---------EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEETT---
T ss_pred CCCeEEEEcCC---------EEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeCC---
Confidence 58999999887 689997532 222111 122321 0 1122222 27899999874
Q ss_pred CCCCCeEEEEECCCCeEEEcc-----CCcC------ccCcceEEE--ECCEEEEEcCccCCCCCCCeEEEEECC
Q psy2979 307 TENTNRVECYHIAENTWEYKS-----PMKE------KRYRPGIAV--IDGKIYVLGGEEGWDGYHDSIECYDVD 367 (400)
Q Consensus 307 ~~~~~~v~~yd~~~~~W~~~~-----~~~~------~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~ 367 (400)
..|+||..+++...-| ..|. +..--++.. .++++|++-|. ..|+||..
T Consensus 137 -----~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~--------~ywr~d~~ 197 (225)
T 3oyo_A 137 -----KYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ--------NYVRIDFT 197 (225)
T ss_dssp -----EEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT--------EEEEEECC
T ss_pred -----eEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC--------EEEEEeCC
Confidence 7999998777655421 1221 122223333 27999999886 68999998
No 241
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=95.30 E-value=1.3 Score=39.91 Aligned_cols=147 Identities=7% Similarity=-0.011 Sum_probs=84.0
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCCce--EEc----cCCCCcccccEEEE--eCCEEEEEcCccccCCCCcce
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEW--SYI----EPMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W--~~~----~~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 264 (400)
+++.+++++|++=| ..+++++.....- ..+ +.||.. .. ++.. .++++|++-|. .
T Consensus 185 Av~~~~g~~~fFkg-------~~~Wr~~~~~~~~~p~~I~~~wpgLP~~-iD-Aa~~~~~~g~~~fFkg~---------~ 246 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD-------RFFWLKVSERPKTSVNLISSLWPTLPSG-IE-AAYEIEARNQVFLFKDD---------K 246 (365)
T ss_dssp CEEEETTEEEEEET-------TEEEECCSSCCCCCEEEHHHHCSSCCSS-CC-EEEEEGGGTEEEEEETT---------E
T ss_pred eEEEcCCeEEEEeC-------CEEEEEcCCCccCCccchhhhccCCCCC-cc-EEEEecCCCEEEEEeCC---------E
Confidence 45567999999976 4466665443211 111 234522 22 2333 38999999886 6
Q ss_pred EEEEeCCCCc--e-eeccC--CCCC-ceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC------Cc
Q psy2979 265 VQRYNPKVNQ--W-QDLAP--MLIP-RSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP------MK 330 (400)
Q Consensus 265 v~~yd~~~~~--W-~~~~~--~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~------~~ 330 (400)
.|+|+..... + ..+.. +|.. ..--++... ++++|++-| +..|+||..+++-..--+ .|
T Consensus 247 yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG--------~~yw~yd~~~~~v~~gyPk~I~~~f~ 318 (365)
T 3ba0_A 247 YWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD--------NQYWRYDERRQMMDPGYPKLITKNFQ 318 (365)
T ss_dssp EEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCCCCHHHHST
T ss_pred EEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC--------CEEEEEeCCcceecCCCCcchhhcCC
Confidence 8998764321 1 12222 2321 122233333 589999986 379999987764321001 11
Q ss_pred -CccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEE
Q psy2979 331 -EKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 331 -~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
.+...-++... ++++|++-|. ..|+||..+.+-..
T Consensus 319 g~p~~iDaA~~~~~g~~YfFkg~--------~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 319 GIGPKIDAVFYSKNKYYYFFQGS--------NQFEYDFLLQRITK 355 (365)
T ss_dssp TCCSSCSEEEEETTTEEEEEETT--------EEEEEETTTTEEEE
T ss_pred CCCCccceeeEecCCcEEEEeCC--------EEEEEECCccEEec
Confidence 12223334445 8999999875 68999998876544
No 242
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=95.29 E-value=0.5 Score=38.42 Aligned_cols=144 Identities=11% Similarity=0.052 Sum_probs=80.2
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCC---CceEEc----cCCCCcccccEEEEeCCEEEEEcCccccCCCCcceE
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTK---NEWSYI----EPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~---~~W~~~----~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v 265 (400)
+++.+++.+|++-| +.+++++... +-=..+ +.||.. -..+....++++|++-|. ..
T Consensus 10 A~~~~~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~w~glP~~-iDAa~~~~~g~~yfFkg~---------~y 72 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQFWRGLPAS-INTAYERKDGKFVFFKGD---------KH 72 (196)
T ss_dssp EEEEETTEEEEEET-------TEEEEEETTEECTTCSEEHHHHSTTCCSS-CCEEEECTTSCEEEEETT---------EE
T ss_pred EEEEcCCEEEEEEC-------CEEEEEECCccCCCCceEhhHhccCCCCC-ccEEEEeCCCcEEEecCC---------EE
Confidence 34467899999987 5577775431 100112 235542 222222257899999886 68
Q ss_pred EEEeCCCCce---eecc----CCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-----ccCCc-
Q psy2979 266 QRYNPKVNQW---QDLA----PMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEY-----KSPMK- 330 (400)
Q Consensus 266 ~~yd~~~~~W---~~~~----~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-----~~~~~- 330 (400)
|+|+..+... ..+. .+|...- -++... ++++|++-|. ..++||..+++-.. +...+
T Consensus 73 w~~~~~~~~~gyPk~I~~~~~glP~~~I-DAA~~~~~~g~~yfFkG~--------~yw~yd~~~~~v~~gyPk~i~~~~g 143 (196)
T 3c7x_A 73 WVFDEASLEPGYPKHIKELGRGLPTDKI-DAALFWMPNGKTYFFRGN--------KYYRFNEELRAVDSEYPKNIKVWEG 143 (196)
T ss_dssp EEEETTEECTTCSEEGGGTCBSCCSSCC-SEEEEETTTTEEEEEETT--------EEEEEETTTTEECTTCSEEGGGSBT
T ss_pred EEEeCCcccCCCCeEhhhcCCCCCCCcc-cEEEEEccCCEEEEEECC--------EEEEEeCCcccccCCCCccHHHCCC
Confidence 9998643211 1121 1332222 223322 6899999864 78999988764221 11111
Q ss_pred CccCcceEEEE-CC-EEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 331 EKRYRPGIAVI-DG-KIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 331 ~~~~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+...-++... ++ ++|++-|. ..|+||..+.+
T Consensus 144 ip~~idaAf~~~~~~~~YfFkg~--------~y~r~d~~~~~ 177 (196)
T 3c7x_A 144 IPESPRGSFMGSDEVFTYFYKGN--------KYWKFNNQKLK 177 (196)
T ss_dssp CCSSCSEEEECTTSSEEEEEETT--------EEEEEETTTTE
T ss_pred cCCCcceeEEecCCCEEEEEECC--------EEEEEECCcce
Confidence 11222233333 44 99999885 68999988764
No 243
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.28 E-value=2.2 Score=41.02 Aligned_cols=104 Identities=10% Similarity=0.016 Sum_probs=62.0
Q ss_pred ceEEEEEc-CCCc--eEEccCCccc--------ceeeeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccCC-CCc-c
Q psy2979 125 RSVEGFCV-KTKV--WKTLSCLPFA--------ISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSL-KFD-F 189 (400)
Q Consensus 125 ~~~~~yd~-~~~~--w~~~~~~~~~--------~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~-~~~-r 189 (400)
..+..+|+ .+++ |+.-...+.. ....+.++.++. +|+......++.+|..+++ |+.-..- +.. .
T Consensus 73 ~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~ 151 (571)
T 2ad6_A 73 NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQ-IVKKQANGHLLALDAKTGKINWEVEVCDPKVGST 151 (571)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTE-EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCB
T ss_pred CEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCE-EEEEeCCCEEEEEECCCCCEEEEecCCCCCccce
Confidence 46889999 7875 8754332211 011235566777 8888666789999998875 7643221 110 1
Q ss_pred eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--eEEc
Q psy2979 190 DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE--WSYI 229 (400)
Q Consensus 190 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 229 (400)
...+-++.++.+|+..+..+......+..||+.+++ |+.-
T Consensus 152 ~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 152 LTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp CCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred eccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 122334468888876432111123578999998774 7654
No 244
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.24 E-value=1.2 Score=47.34 Aligned_cols=138 Identities=10% Similarity=-0.005 Sum_probs=71.5
Q ss_pred eecCEEEEEECCCCCeEEccCCCCc-ceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFD-FDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAV 241 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~ 241 (400)
.....+..||..+++... .+... ..-.+++.. +++..+.|+.+ ..+..||..+++....- .........
T Consensus 634 ~~d~~i~vw~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~--~~~~~~v~~ 704 (1249)
T 3sfz_A 634 GADKTLQVFKAETGEKLL--DIKAHEDEVLCCAFSSDDSYIATCSAD-----KKVKIWDSATGKLVHTY--DEHSEQVNC 704 (1249)
T ss_dssp ETTSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEE--ECCSSCEEE
T ss_pred eCCCeEEEEECCCCCEEE--EeccCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEECCCCceEEEE--cCCCCcEEE
Confidence 445678888987765322 11111 111122222 56666777654 46889999887643321 111111122
Q ss_pred EEe----CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEE
Q psy2979 242 VAH----EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317 (400)
Q Consensus 242 ~~~----~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 317 (400)
+.+ ++.+++.|+. ++ .+..||..+..-...-.-....-......-++..++.|+. ...+..||
T Consensus 705 ~~~~~~~~~~~l~sg~~---d~----~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~------dg~v~vwd 771 (1249)
T 3sfz_A 705 CHFTNKSNHLLLATGSN---DF----FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA------DGTLRLWD 771 (1249)
T ss_dssp EEECSSSSCCEEEEEET---TS----CEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES------SSEEEEEE
T ss_pred EEEecCCCceEEEEEeC---CC----eEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC------CCeEEEEe
Confidence 222 3456666666 43 6889998776543221111111111122226677777765 45788899
Q ss_pred CCCCeE
Q psy2979 318 IAENTW 323 (400)
Q Consensus 318 ~~~~~W 323 (400)
..+..-
T Consensus 772 ~~~~~~ 777 (1249)
T 3sfz_A 772 VRSANE 777 (1249)
T ss_dssp GGGTEE
T ss_pred CCCCcc
Confidence 877753
No 245
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=95.24 E-value=1.6 Score=39.10 Aligned_cols=236 Identities=9% Similarity=-0.053 Sum_probs=113.6
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeE-E-EECCeEEEEE-----------------------eecCEEEEEECCCCCe
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGL-V-VSGRNTIYCL-----------------------DIVDIVYVAASMHKIL 179 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~-~-~~~~~~iyv~-----------------------~~~~~~~~yd~~~~~w 179 (400)
..+..+|+.+++-..+...+........ + .-++. .++. .....++.+|+.+++-
T Consensus 102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CeEEEEECCCCcceeeeechhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 4688888888776655444433222111 1 22344 3322 0225688899988876
Q ss_pred EEccCCCCcceeeeEEEE-CCEEEEEcccC-CCCCCCeEEEEeCCCCceEEccCCCCcc-cccEEEEeCCE-EEEEcCcc
Q psy2979 180 HSLGSLKFDFDVSGIAML-DGFVYAVGGWD-GSCRLDSVERYDPTKNEWSYIEPMKLAV-TSPAVVAHEGM-LYVTGGAI 255 (400)
Q Consensus 180 ~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~l~~~~-~~~~~~~~~~~-iyv~GG~~ 255 (400)
..+..-+. ........- +++.+++.... .......++.+|+.+.....+..-.... ..+..-.-+|+ |+..+..
T Consensus 181 ~~l~~~~~-~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~- 258 (388)
T 3pe7_A 181 TVILQENQ-WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYL- 258 (388)
T ss_dssp EEEEEESS-CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEE-
T ss_pred EEeecCCc-cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecC-
Confidence 55543221 112222222 34433332222 1123457999999887776665433211 11112222554 5333322
Q ss_pred ccCCCCcceEEEEeCCCCceeeccCCCCCcee-----eeEEEECCe-EEEEc----CcCCCCCCCCeEEEEECCCCeEEE
Q psy2979 256 LEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSG-----AAICALDSC-IYVLG----GWHASTENTNRVECYHIAENTWEY 325 (400)
Q Consensus 256 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-----~~~~~~~~~-iyv~G----G~~~~~~~~~~v~~yd~~~~~W~~ 325 (400)
++.....++.+|+.+.+-+.+..++..... .....-+++ |++.. |... .. ...++.+|+.+++-..
T Consensus 259 --~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~-~~-~~~i~~~d~~~~~~~~ 334 (388)
T 3pe7_A 259 --KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKI-EN-DPFLYVFNMKNGTQHR 334 (388)
T ss_dssp --TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------------CC-CCEEEEEETTTTEEEE
T ss_pred --CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccccc-CC-CCEEEEEeccCCceEE
Confidence 221123599999998887666544331000 001222332 33221 0000 11 4689999999988776
Q ss_pred ccCCcCc----------cCcceEEEECC-EEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 326 KSPMKEK----------RYRPGIAVIDG-KIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 326 ~~~~~~~----------~~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
+...+.. ........-+| .|++.... . ....+|.+|.....|
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~-~---g~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 335 VARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV-H---GKPALYLATLPESVW 387 (388)
T ss_dssp EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-T---SSCEEEEEECCGGGG
T ss_pred eccccCcccccccccccCCCCccCCCCCCEEEEEecC-C---CceeEEEEECChhcc
Confidence 6543321 01111222255 45554433 2 245799999887766
No 246
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=95.23 E-value=1.9 Score=41.54 Aligned_cols=186 Identities=9% Similarity=0.067 Sum_probs=97.8
Q ss_pred EEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc
Q psy2979 160 IYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV 236 (400)
Q Consensus 160 iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~ 236 (400)
+|+. ...+.+..+|+.+++-.. .++....-+.++.. +..+|+.+. ...+..||+...+-+.+..++...
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~--~i~~g~~p~~v~~SpDGr~lyv~~~------dg~V~viD~~~~t~~~v~~i~~G~ 240 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKT--VLDTGYAVHISRLSASGRYLFVIGR------DGKVNMIDLWMKEPTTVAEIKIGS 240 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEE--EEECSSCEEEEEECTTSCEEEEEET------TSEEEEEETTSSSCCEEEEEECCS
T ss_pred EEEEeCCCCeEEEEECCCCeEEE--EEeCCCCccceEECCCCCEEEEEcC------CCeEEEEECCCCCCcEeEEEecCC
Confidence 5555 445788999998876442 22222222333332 457787542 246999998522223333333322
Q ss_pred cccEEEEe-----CC-EEEEEcCccccCCCCcceEEEEeCCCCceeec-c--CC--------CCCceeeeEEEECCeEEE
Q psy2979 237 TSPAVVAH-----EG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL-A--PM--------LIPRSGAAICALDSCIYV 299 (400)
Q Consensus 237 ~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~-~--~~--------~~~r~~~~~~~~~~~iyv 299 (400)
.-..++.. +| .+|+..-. .+.+..+|..+.+=... + .+ |.+|.....+..++..++
T Consensus 241 ~P~~ia~s~~~~pDGk~l~v~n~~-------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 241 EARSIETSKMEGWEDKYAIAGAYW-------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEE-------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred CCceeEEccccCCCCCEEEEEEcc-------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence 22233333 44 56666443 34788889766543221 1 11 122333333333434444
Q ss_pred EcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE-CCE-EEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 300 LGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-DGK-IYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 300 ~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
+--. . ...++..|..+.....+...+..+..|....- +++ +|+.... .+.|.++|..+++-
T Consensus 314 v~~~----~-~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~------sn~V~ViD~~t~kl 376 (567)
T 1qks_A 314 VNVK----E-TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA------RNKLVVIDTKEGKL 376 (567)
T ss_dssp EEET----T-TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG------GTEEEEEETTTTEE
T ss_pred EEec----C-CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC------CCeEEEEECCCCcE
Confidence 3311 1 56888898887665555555555555554333 444 4554332 46899999998863
No 247
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.12 E-value=0.066 Score=49.67 Aligned_cols=145 Identities=9% Similarity=0.008 Sum_probs=79.0
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCC-CcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK-LAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~-~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
++.+.+.|+.++ .+..||..+++-...-.+. ....-.+++. .++.+++.|+. |+ .+..||..++.
T Consensus 131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~---D~----~v~iwd~~~~~ 198 (435)
T 4e54_B 131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM---EG----TTRLQDFKGNI 198 (435)
T ss_dssp CTTCEEEEETTS-----CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS---SS----CEEEEETTSCE
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC---CC----EEEEeeccCCc
Confidence 345677777664 4888888776543332222 1112223333 35677778887 65 68889988776
Q ss_pred eeeccCCCCCc-eeeeEE-EECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEc
Q psy2979 275 WQDLAPMLIPR-SGAAIC-ALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLG 349 (400)
Q Consensus 275 W~~~~~~~~~r-~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~G 349 (400)
...+....... ...++. .-++.+++.|+. ...+..||...+. +..+......-..+.+ ++.+++.|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~------dg~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 199 LRVFASSDTINIWFCSLDVSASSRMVVTGDN------VGNVILLNMDGKE---LWNLRMHKKKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp EEEEECCSSCSCCCCCEEEETTTTEEEEECS------SSBEEEEESSSCB---CCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred eeEEeccCCCCccEEEEEECCCCCEEEEEeC------CCcEeeeccCcce---eEEEecccceEEeeeecCCCceEEEEe
Confidence 55443222111 112222 236778888876 4578889986543 2222221122223333 23466677
Q ss_pred CccCCCCCCCeEEEEECCCC
Q psy2979 350 GEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~~~~ 369 (400)
+. + ..|.+||..+.
T Consensus 270 s~-d-----~~v~iwd~~~~ 283 (435)
T 4e54_B 270 SV-D-----QTVKIWDLRQV 283 (435)
T ss_dssp ET-T-----SBCCEEETTTC
T ss_pred cC-c-----ceeeEEecccc
Confidence 65 2 35677887664
No 248
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=95.08 E-value=2.1 Score=39.53 Aligned_cols=141 Identities=13% Similarity=0.049 Sum_probs=70.4
Q ss_pred eecCEEEEEECC--CCCeEEc-cCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEE--ccCCCCccc
Q psy2979 164 DIVDIVYVAASM--HKILHSL-GSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSY--IEPMKLAVT 237 (400)
Q Consensus 164 ~~~~~~~~yd~~--~~~w~~~-~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~--~~~l~~~~~ 237 (400)
.....+..||.. +++.... .....+..-.+++.. ++..++.|+.+ ..+..++..+.+... ...+.....
T Consensus 122 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~-----g~v~~~~~~~~~~~~~~~~~~~~h~~ 196 (450)
T 2vdu_B 122 DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF-----GDVYSIDINSIPEEKFTQEPILGHVS 196 (450)
T ss_dssp GGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTSCCCSSCCCCCSEECSS
T ss_pred CCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCC-----CcEEEEecCCcccccccceeeecccC
Confidence 344677888876 4432221 100111111122222 45556666543 357888876654321 111111111
Q ss_pred c-cEE-EEeC---CEEEEEcCccccCCCCcceEEEEeCCCCceeec--cCCCCCceeeeEEEECCeEEEEcCcCCCCCCC
Q psy2979 238 S-PAV-VAHE---GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL--APMLIPRSGAAICALDSCIYVLGGWHASTENT 310 (400)
Q Consensus 238 ~-~~~-~~~~---~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 310 (400)
. .++ ..-+ +++++.|+. ++ .+..||..+.+.... ..-..+ -...... ++.+++.|+. .
T Consensus 197 ~v~~~~~sp~~~~~~~l~s~~~---d~----~i~vwd~~~~~~~~~~~~~h~~~-v~~~~~s-d~~~l~s~~~------d 261 (450)
T 2vdu_B 197 MLTDVHLIKDSDGHQFIITSDR---DE----HIKISHYPQCFIVDKWLFGHKHF-VSSICCG-KDYLLLSAGG------D 261 (450)
T ss_dssp CEEEEEEEECTTSCEEEEEEET---TS----CEEEEEESCTTCEEEECCCCSSC-EEEEEEC-STTEEEEEES------S
T ss_pred ceEEEEEcCCCCCCcEEEEEcC---CC----cEEEEECCCCceeeeeecCCCCc-eEEEEEC-CCCEEEEEeC------C
Confidence 1 112 2235 778888877 54 688888876653321 111111 1122223 7777778775 5
Q ss_pred CeEEEEECCCCeEE
Q psy2979 311 NRVECYHIAENTWE 324 (400)
Q Consensus 311 ~~v~~yd~~~~~W~ 324 (400)
..+..||..+++..
T Consensus 262 ~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 262 DKIFAWDWKTGKNL 275 (450)
T ss_dssp SEEEEEETTTCCEE
T ss_pred CeEEEEECCCCcEe
Confidence 68999999887643
No 249
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=95.06 E-value=1.5 Score=37.99 Aligned_cols=210 Identities=13% Similarity=0.126 Sum_probs=105.5
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee-cCEEEEEECCCCCeEEccCCCCc-c-e-eeeEEE-EC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI-VDIVYVAASMHKILHSLGSLKFD-F-D-VSGIAM-LD 198 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~-~~~~~~yd~~~~~w~~~~~~~~~-r-~-~~~~~~-~~ 198 (400)
..+..|++ +++...+.. +.. ...+++.- ++. +|+... ...+..||+. ++...+...... + . -..++. -+
T Consensus 67 ~~i~~~~~-~g~~~~~~~-~~~-~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~d 141 (305)
T 3dr2_A 67 RRVLGWRE-DGTVDVLLD-ATA-FTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARD 141 (305)
T ss_dssp TEEEEEET-TSCEEEEEE-SCS-CEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTT
T ss_pred CEEEEEeC-CCCEEEEeC-CCC-ccceeeECCCCC-EEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCC
Confidence 45777887 444443322 111 12334433 556 887743 3689999986 666655432111 1 1 112222 26
Q ss_pred CEEEEE----cccCC--------CCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCC-EEEEEcCccccCCCC-cc
Q psy2979 199 GFVYAV----GGWDG--------SCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEG-MLYVTGGAILEDGDG-IE 263 (400)
Q Consensus 199 ~~iyv~----GG~~~--------~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~-~~ 263 (400)
+.+|+. |-... ......+++||+.+++++.+. .... -.+.+. -++ .+|+.... .... ..
T Consensus 142 G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~-p~gl~~spdg~~lyv~~~~---~~~~~~~ 215 (305)
T 3dr2_A 142 GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH-PNGLAFSPDEQTLYVSQTP---EQGHGSV 215 (305)
T ss_dssp SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS-EEEEEECTTSSEEEEEECC---C---CCC
T ss_pred CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC-CcceEEcCCCCEEEEEecC---CcCCCCC
Confidence 788885 32110 112356999999888887664 1111 112333 244 58887543 1100 24
Q ss_pred eEEEEeCCCCceeec---cCCCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEE
Q psy2979 264 QVQRYNPKVNQWQDL---APMLIPRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIA 339 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~---~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 339 (400)
.+++||...+..... ...+... -.+++. -++.||+..+ ..+.+||+.......+. .|. ....+
T Consensus 216 ~i~~~~~~~~~l~~~~~~~~~~~~~-pdgi~~d~~G~lwv~~~--------~gv~~~~~~g~~~~~~~-~~~---~~~~~ 282 (305)
T 3dr2_A 216 EITAFAWRDGALHDRRHFASVPDGL-PDGFCVDRGGWLWSSSG--------TGVCVFDSDGQLLGHIP-TPG---TASNC 282 (305)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSC-CCSEEECTTSCEEECCS--------SEEEEECTTSCEEEEEE-CSS---CCCEE
T ss_pred EEEEEEecCCCccCCeEEEECCCCC-CCeEEECCCCCEEEecC--------CcEEEECCCCCEEEEEE-CCC---ceeEE
Confidence 789998765542211 1111111 112222 3677887652 35999999766555443 222 23333
Q ss_pred EE---CCEEEEEcCccCCCCCCCeEEEEEC
Q psy2979 340 VI---DGKIYVLGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 340 ~~---~~~lyv~GG~~~~~~~~~~v~~yd~ 366 (400)
++ ++.||+... ..++++++
T Consensus 283 ~f~~d~~~L~it~~--------~~l~~~~~ 304 (305)
T 3dr2_A 283 TFDQAQQRLFITGG--------PCLWMLPL 304 (305)
T ss_dssp EECTTSCEEEEEET--------TEEEEEEC
T ss_pred EEeCCCCEEEEEcC--------CeEEEEEC
Confidence 44 346777543 25666654
No 250
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=95.02 E-value=1.7 Score=38.24 Aligned_cols=135 Identities=7% Similarity=-0.023 Sum_probs=67.0
Q ss_pred eEEEEEcCCCce-EEccCCc---ccceeeeEEEE-C----CeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEE
Q psy2979 126 SVEGFCVKTKVW-KTLSCLP---FAISKHGLVVS-G----RNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIA 195 (400)
Q Consensus 126 ~~~~yd~~~~~w-~~~~~~~---~~~~~~~~~~~-~----~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~ 195 (400)
.+..||..+++. ..+.... ....-.+++.. + +. +++. .....+..||..+++-...-. .....-.++.
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~ 122 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP-LLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELK 122 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE-EEEEEETTCEEEEECTTTCCEEEEEE-SCCSCEEEEE
T ss_pred EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC-EEEEecCCCEEEEEEchhceEeeeec-CCCCcEEEEE
Confidence 578888776543 2222111 11222233333 2 23 3333 555678889987665322111 0111111222
Q ss_pred EE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEcc-CCCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 196 ML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE-PMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 196 ~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
.. ++.+++.|+.+ ..+..||..+++-...- .+........... -++..++.|+. ++ .+..||.
T Consensus 123 ~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg----~i~i~d~ 190 (366)
T 3k26_A 123 FHPRDPNLLLSVSKD-----HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM---DH----SLKLWRI 190 (366)
T ss_dssp ECSSCTTEEEEEETT-----SCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEET---TS----CEEEEES
T ss_pred ECCCCCCEEEEEeCC-----CeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecC---CC----CEEEEEC
Confidence 22 55677777765 35889999887644332 1121111122222 25667777776 44 6888988
Q ss_pred CCCc
Q psy2979 271 KVNQ 274 (400)
Q Consensus 271 ~~~~ 274 (400)
.+.+
T Consensus 191 ~~~~ 194 (366)
T 3k26_A 191 NSKR 194 (366)
T ss_dssp CSHH
T ss_pred CCCc
Confidence 7653
No 251
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=94.95 E-value=1.5 Score=37.20 Aligned_cols=177 Identities=15% Similarity=0.076 Sum_probs=98.8
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DG 199 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~ 199 (400)
..+..+++....-..+.... ....+++++. ++. +|+. ...+.+..+++....-..+.+....+ -..++.- ++
T Consensus 58 ~~I~~~~~~g~~~~~~~~~~-~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~-P~~i~vd~~~g 134 (267)
T 1npe_A 58 PSIGRASLHGGEPTTIIRQD-LGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGTQRRVLFDTGLVN-PRGIVTDPVRG 134 (267)
T ss_dssp TEEEEEESSSCCCEEEECTT-CCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSS-EEEEEEETTTT
T ss_pred CEEEEEecCCCCcEEEEECC-CCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCCCEEEEEECCCCC-ccEEEEeeCCC
Confidence 46788887665433322111 1123455554 456 9988 44568899998754433332211111 1233333 68
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceee
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD 277 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 277 (400)
.||+..... ....++++++....-+.+..... ..-.+++.- ++.||+.... .+.+.++|+.+..-..
T Consensus 135 ~lyv~~~~~---~~~~I~~~~~dg~~~~~~~~~~~-~~P~gia~d~~~~~lyv~d~~-------~~~I~~~~~~g~~~~~ 203 (267)
T 1npe_A 135 NLYWTDWNR---DNPKIETSHMDGTNRRILAQDNL-GLPNGLTFDAFSSQLCWVDAG-------THRAECLNPAQPGRRK 203 (267)
T ss_dssp EEEEEECCS---SSCEEEEEETTSCCCEEEECTTC-SCEEEEEEETTTTEEEEEETT-------TTEEEEEETTEEEEEE
T ss_pred EEEEEECCC---CCcEEEEEecCCCCcEEEEECCC-CCCcEEEEcCCCCEEEEEECC-------CCEEEEEecCCCceEE
Confidence 999975321 13568888887554333322111 111233332 5789998655 4589999987643322
Q ss_pred c-cCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 278 L-APMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 278 ~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
+ ..+..| .+++.-++.+|+.... .+.+.++|+.+++-.
T Consensus 204 ~~~~~~~P---~gi~~d~~~lyva~~~------~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 204 VLEGLQYP---FAVTSYGKNLYYTDWK------TNSVIAMDLAISKEM 242 (267)
T ss_dssp EEECCCSE---EEEEEETTEEEEEETT------TTEEEEEETTTTEEE
T ss_pred EecCCCCc---eEEEEeCCEEEEEECC------CCeEEEEeCCCCCce
Confidence 2 223333 3455568899997644 568999999887644
No 252
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=94.90 E-value=3.1 Score=40.57 Aligned_cols=197 Identities=10% Similarity=-0.068 Sum_probs=102.6
Q ss_pred cCEEEEEECC--C-CCeEEccCCC---CcceeeeEEE-ECC-EEEEEcccCC-----CCCCCeEEEEeCCC------Cce
Q psy2979 166 VDIVYVAASM--H-KILHSLGSLK---FDFDVSGIAM-LDG-FVYAVGGWDG-----SCRLDSVERYDPTK------NEW 226 (400)
Q Consensus 166 ~~~~~~yd~~--~-~~w~~~~~~~---~~r~~~~~~~-~~~-~iyv~GG~~~-----~~~~~~v~~yd~~~------~~W 226 (400)
...+|.++.. . +....+...+ ........+. -++ .|+... .+. ......++.+|..+ ++.
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 179 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMA-EEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEE-EEECSSSTTCEEEEEEEEETTSTTTTCGGGS
T ss_pred CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEE-ecccCCCCCCceeEEEEEECCCCccccCCce
Confidence 4578888876 3 5556665533 1112222222 255 444433 221 12235788999988 666
Q ss_pred EEcc-CCCCcccccEEEEeCCEEEEEcCccccCCCC--cceEEEEeCC-CC---ceeeccCCCCCceeeeEE-EECCeEE
Q psy2979 227 SYIE-PMKLAVTSPAVVAHEGMLYVTGGAILEDGDG--IEQVQRYNPK-VN---QWQDLAPMLIPRSGAAIC-ALDSCIY 298 (400)
Q Consensus 227 ~~~~-~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~v~~yd~~-~~---~W~~~~~~~~~r~~~~~~-~~~~~iy 298 (400)
..+. .-+. ........-+|+..++..... .+.. ...++.+|.. +. ....+..-... .....+ .-+|++|
T Consensus 180 ~~l~~~~~~-~~~~~~~SpDG~~la~~~~~~-~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-~~~~~~~spdg~l~ 256 (662)
T 3azo_A 180 RELSDDAHR-FVTGPRLSPDGRQAVWLAWDH-PRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-AIAQAEWAPDGSLI 256 (662)
T ss_dssp EESSCSCSS-EECCCEECTTSSEEEEEEECT-TCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-CEEEEEECTTSCEE
T ss_pred eEEEecCCC-cccCceECCCCCEEEEEECCC-CCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-eEcceEECCCCeEE
Confidence 6554 2221 111112233555444433210 1111 3589999998 45 34433221111 112222 2377877
Q ss_pred EEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCcc----C---cceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 299 VLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR----Y---RPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 299 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~----~---~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+.+..++ ...++.+|+.++++..+....... . ....+.. ++++++.+.. ....+|.+|..+++
T Consensus 257 ~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 257 VATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-----GAAVLGILDPESGE 327 (662)
T ss_dssp EEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-----SSCEEEEEETTTTE
T ss_pred EEECCCC----CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-----CccEEEEEECCCCc
Confidence 7765432 348999999899998876543221 1 1123333 6777766542 24678999998887
Q ss_pred EEEec
Q psy2979 371 WEIMS 375 (400)
Q Consensus 371 W~~~~ 375 (400)
.+.+.
T Consensus 328 ~~~l~ 332 (662)
T 3azo_A 328 LVDAA 332 (662)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 76653
No 253
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=94.84 E-value=1.9 Score=37.92 Aligned_cols=200 Identities=12% Similarity=0.083 Sum_probs=101.7
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEE-ECCeEEEEEeecCEEEEEECCCCCeEEccCCCC----cceeeeEEEECC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVV-SGRNTIYCLDIVDIVYVAASMHKILHSLGSLKF----DFDVSGIAMLDG 199 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~-~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~----~r~~~~~~~~~~ 199 (400)
..+..||+.+++...+. .+. .-.+++. -++. +++.. ...++.+|+.+++...+...+. .+.......-++
T Consensus 71 ~~i~~~d~~~~~~~~~~-~~~--~v~~i~~~~dg~-l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G 145 (326)
T 2ghs_A 71 RELHELHLASGRKTVHA-LPF--MGSALAKISDSK-QLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG 145 (326)
T ss_dssp TEEEEEETTTTEEEEEE-CSS--CEEEEEEEETTE-EEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS
T ss_pred CEEEEEECCCCcEEEEE-CCC--cceEEEEeCCCe-EEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC
Confidence 47889999887655433 222 2233333 3566 77653 4569999999888876654321 122222222266
Q ss_pred EEEEEccc-CCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe-CC-EEEEEcCccccCCCCcceEEEEeCC--CC-
Q psy2979 200 FVYAVGGW-DGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EG-MLYVTGGAILEDGDGIEQVQRYNPK--VN- 273 (400)
Q Consensus 200 ~iyv~GG~-~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~v~~yd~~--~~- 273 (400)
++|+.... ........++++| +++...+.. ......+.+.. ++ .+|+.... ...+++||.. +.
T Consensus 146 ~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~~lyv~~~~-------~~~I~~~d~~~~~Gl 214 (326)
T 2ghs_A 146 ALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGTTGYFVDTK-------VNRLMRVPLDARTGL 214 (326)
T ss_dssp CEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSCEEEEEETT-------TCEEEEEEBCTTTCC
T ss_pred CEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCCEEEEEECC-------CCEEEEEEcccccCC
Confidence 78774321 1112335688888 466554421 00011122322 44 68887544 2479999875 33
Q ss_pred c------eeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEEC----
Q psy2979 274 Q------WQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVID---- 342 (400)
Q Consensus 274 ~------W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~---- 342 (400)
. +..... ....-.+++.- ++.+|+.... ...+.+||+....-..+. .|. .....+.++
T Consensus 215 ~~~~~~~~~~~~~--~~~~p~gi~~d~~G~lwva~~~------~~~v~~~d~~g~~~~~i~-~~~--~~~~~~af~g~d~ 283 (326)
T 2ghs_A 215 PTGKAEVFIDSTG--IKGGMDGSVCDAEGHIWNARWG------EGAVDRYDTDGNHIARYE-VPG--KQTTCPAFIGPDA 283 (326)
T ss_dssp BSSCCEEEEECTT--SSSEEEEEEECTTSCEEEEEET------TTEEEEECTTCCEEEEEE-CSC--SBEEEEEEESTTS
T ss_pred cccCceEEEECCC--CCCCCCeeEECCCCCEEEEEeC------CCEEEEECCCCCEEEEEE-CCC--CCcEEEEEecCCC
Confidence 2 222211 01111222222 6788886521 347999999654433332 222 223344442
Q ss_pred CEEEEEcCc
Q psy2979 343 GKIYVLGGE 351 (400)
Q Consensus 343 ~~lyv~GG~ 351 (400)
+.||+....
T Consensus 284 ~~L~vt~~~ 292 (326)
T 2ghs_A 284 SRLLVTSAR 292 (326)
T ss_dssp CEEEEEEBC
T ss_pred CEEEEEecC
Confidence 468887544
No 254
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.80 E-value=2.2 Score=38.38 Aligned_cols=147 Identities=10% Similarity=0.061 Sum_probs=79.0
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEcc--CCCCcccccE--EEE--eCCEEEEEcCccccCCCCcceEEEEeCCCC
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIE--PMKLAVTSPA--VVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVN 273 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~l~~~~~~~~--~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 273 (400)
..++.|+.+ ..+..||..+++-...- ..+....... ++. .++.+++.|+. ++ .+..||....
T Consensus 171 ~~l~s~s~D-----~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~---D~----~v~~wd~~~~ 238 (380)
T 3iz6_a 171 TRLITGSGD-----QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC---DT----TVRLWDLRIT 238 (380)
T ss_dssp SCEEEECTT-----SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET---TS----CEEEEETTTT
T ss_pred CEEEEECCC-----CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC---CC----eEEEEECCCC
Confidence 344555544 45888999887654332 2222222221 121 26788888887 55 6888987532
Q ss_pred c--eeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCC-cCc----cCcceEEEE--CC
Q psy2979 274 Q--WQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPM-KEK----RYRPGIAVI--DG 343 (400)
Q Consensus 274 ~--W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~----~~~~~~~~~--~~ 343 (400)
. -..+..-.. .-.+++.. ++..++.|+. ...+..||..+++-...-.. +.. ......+.+ ++
T Consensus 239 ~~~~~~~~~h~~--~v~~v~~~p~~~~l~s~s~------D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 310 (380)
T 3iz6_a 239 SRAVRTYHGHEG--DINSVKFFPDGQRFGTGSD------DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG 310 (380)
T ss_dssp CCCCEEECCCSS--CCCEEEECTTSSEEEEECS------SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS
T ss_pred CcceEEECCcCC--CeEEEEEecCCCeEEEEcC------CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC
Confidence 1 111111000 11122222 6677888876 45788999988764432211 111 111223333 67
Q ss_pred EEEEEcCccCCCCCCCeEEEEECCCCcEE
Q psy2979 344 KIYVLGGEEGWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 344 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 372 (400)
++++.|+. + ..|.+||..+.+-.
T Consensus 311 ~~l~~g~~-d-----g~i~vwd~~~~~~~ 333 (380)
T 3iz6_a 311 RLLFAGYS-N-----GDCYVWDTLLAEMV 333 (380)
T ss_dssp SEEEEECT-T-----SCEEEEETTTCCEE
T ss_pred CEEEEEEC-C-----CCEEEEECCCCceE
Confidence 77777765 2 46899998776543
No 255
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=94.80 E-value=1.9 Score=37.60 Aligned_cols=179 Identities=11% Similarity=0.019 Sum_probs=84.3
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA 243 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~ 243 (400)
.....+..++........................++..++.|+.++ .+..||.....-........ ........
T Consensus 105 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~-----~~~~~d~~~~~~~~~~~~~~-~~~v~~~~ 178 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK-----TIKLWNTLGVCKYTVQDESH-SEWVSCVR 178 (340)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS-----CEEEECTTSCEEEEECSSSC-SSCEEEEE
T ss_pred cccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCC-----eEEEEEeCCCceEEEEeccc-cCcccceE
Confidence 4445667777766554333222221121122222445556666543 46677776543322221111 11111111
Q ss_pred e----CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 244 H----EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 244 ~----~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
+ .+.+++.|+. ++ .+..||..+.+....-..... .-.+++. -++.+++.|+. ...+..||.
T Consensus 179 ~~~~~~~~~~~s~~~---d~----~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~------Dg~i~iwd~ 244 (340)
T 4aow_A 179 FSPNSSNPIIVSCGW---DK----LVKVWNLANCKLKTNHIGHTG-YLNTVTVSPDGSLCASGGK------DGQAMLWDL 244 (340)
T ss_dssp ECSCSSSCEEEEEET---TS----CEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEET------TCEEEEEET
T ss_pred EccCCCCcEEEEEcC---CC----EEEEEECCCCceeeEecCCCC-cEEEEEECCCCCEEEEEeC------CCeEEEEEe
Confidence 1 2346666666 43 688899877654332111111 1112222 26778888876 457888998
Q ss_pred CCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 319 AENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 319 ~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+.+-...-. .......+....+..++.++. + ..|.+||..+..
T Consensus 245 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-d-----~~i~iwd~~~~~ 288 (340)
T 4aow_A 245 NEGKHLYTLD--GGDIINALCFSPNRYWLCAAT-G-----PSIKIWDLEGKI 288 (340)
T ss_dssp TTTEEEEEEE--CSSCEEEEEECSSSSEEEEEE-T-----TEEEEEETTTTE
T ss_pred ccCceeeeec--CCceEEeeecCCCCceeeccC-C-----CEEEEEECCCCe
Confidence 8765432211 111111122223334455554 2 468888887764
No 256
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.78 E-value=2.4 Score=38.70 Aligned_cols=141 Identities=16% Similarity=0.186 Sum_probs=76.1
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCCCcce-eeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLKFDFD-VSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVT 237 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~ 237 (400)
+..+..-+.++.+|..+++...+-.+..... -.+++.. ++..++.|+.+ ..+..||..+++-... +.....
T Consensus 118 ~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~~~~~~--~~~h~~ 190 (420)
T 4gga_A 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKRLRN--MTSHSA 190 (420)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEE--ECCCSS
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCCcEEEE--EeCCCC
Confidence 4444445678888988887665444332222 2222222 56777778766 3588999988754322 222222
Q ss_pred ccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC--CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEE
Q psy2979 238 SPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML--IPRSGAAICALDSCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 238 ~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 315 (400)
...+...++.+.+.|+. ++ .+..+|......... .+. ...........++..++.|+. .+.+..
T Consensus 191 ~v~~~s~~~~~l~sgs~---d~----~i~~~d~~~~~~~~~-~~~~h~~~~~~~~~~~~g~~l~s~~~------D~~v~i 256 (420)
T 4gga_A 191 RVGSLSWNSYILSSGSR---SG----HIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGRHLASGGN------DNLVNV 256 (420)
T ss_dssp CEEEEEEETTEEEEEET---TS----EEEEEETTSSSCEEE-EEECCSSCEEEEEECTTSSEEEEEET------TSCEEE
T ss_pred ceEEEeeCCCEEEEEeC---CC----ceeEeeecccceeeE-EecccccceeeeeecCCCCeeeeeec------cccceE
Confidence 23344567778888877 43 677888765432211 111 111111112225666666665 346777
Q ss_pred EECCCC
Q psy2979 316 YHIAEN 321 (400)
Q Consensus 316 yd~~~~ 321 (400)
+|..++
T Consensus 257 ~~~~~~ 262 (420)
T 4gga_A 257 WPSAPG 262 (420)
T ss_dssp EESSCC
T ss_pred Eeeccc
Confidence 776654
No 257
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=94.74 E-value=0.93 Score=40.01 Aligned_cols=136 Identities=12% Similarity=0.065 Sum_probs=69.6
Q ss_pred eecCEEEEEECCCCCeEEccCCC-CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLK-FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAV 241 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~ 241 (400)
.....+..||..+........+. ....-.+++.. ++..++.|+.+ ..+..||..+++.........+.. ++
T Consensus 61 ~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~v~--~~ 133 (368)
T 3mmy_A 61 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD-----KTAKMWDLSSNQAIQIAQHDAPVK--TI 133 (368)
T ss_dssp ETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECSSCEE--EE
T ss_pred CCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC-----CcEEEEEcCCCCceeeccccCceE--EE
Confidence 44456777777653322211111 11111122222 55566666654 468899999887655433222221 22
Q ss_pred E---EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 242 V---AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 242 ~---~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
+ .-++.+++.|+. ++ .+..||..+.+-... +..+....+.....+.+++.++ ...+..||.
T Consensus 134 ~~~~~~~~~~l~~~~~---dg----~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~ 197 (368)
T 3mmy_A 134 HWIKAPNYSCVMTGSW---DK----TLKFWDTRSSNPMMV--LQLPERCYCADVIYPMAVVATA-------ERGLIVYQL 197 (368)
T ss_dssp EEEECSSCEEEEEEET---TS----EEEEECSSCSSCSEE--EECSSCEEEEEEETTEEEEEEG-------GGCEEEEEC
T ss_pred EEEeCCCCCEEEEccC---CC----cEEEEECCCCcEEEE--EecCCCceEEEecCCeeEEEeC-------CCcEEEEEe
Confidence 2 236777888877 43 789999876642221 1122223333444555544443 456778887
Q ss_pred CCCe
Q psy2979 319 AENT 322 (400)
Q Consensus 319 ~~~~ 322 (400)
....
T Consensus 198 ~~~~ 201 (368)
T 3mmy_A 198 ENQP 201 (368)
T ss_dssp SSSC
T ss_pred cccc
Confidence 6553
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.61 E-value=3.5 Score=39.81 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=67.1
Q ss_pred EEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCc---c---eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCC
Q psy2979 152 LVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFD---F---DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTK 223 (400)
Q Consensus 152 ~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~---r---~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 223 (400)
-++.++. +|+......++.+|..+++ |+.-...+.. . ...+.+..+++||+... ...+..+|..+
T Consensus 64 P~v~~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------dg~l~AlD~~T 136 (582)
T 1flg_A 64 AIVSDGV-IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------DASVVALNKNT 136 (582)
T ss_dssp CEEETTE-EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------TTEEEEEESSS
T ss_pred cEEECCE-EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------CCEEEEEECCC
Confidence 3556888 9988554569999998776 8764433211 1 11334567889988532 24689999988
Q ss_pred Cc--eEEccCCCCcc--cccEEEEeCC------EEEEEcCccccCCCC-cceEEEEeCCCCc--eee
Q psy2979 224 NE--WSYIEPMKLAV--TSPAVVAHEG------MLYVTGGAILEDGDG-IEQVQRYNPKVNQ--WQD 277 (400)
Q Consensus 224 ~~--W~~~~~l~~~~--~~~~~~~~~~------~iyv~GG~~~~~~~~-~~~v~~yd~~~~~--W~~ 277 (400)
++ |+.-..-+... ...+-++.++ .+|+-... .... ...++.||+.+.+ |+.
T Consensus 137 G~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~---~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 137 GKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSG---DEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp CCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBC---GGGCCBCEEEEECTTTCCEEEEE
T ss_pred CCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccc---cccCCCCEEEEEECCCCCEEeec
Confidence 84 87643221111 1112234555 66653211 0000 3478999988765 864
No 259
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=94.60 E-value=2.1 Score=37.34 Aligned_cols=212 Identities=12% Similarity=0.042 Sum_probs=102.2
Q ss_pred EEEEeccCCCcccceEEEEEc-CCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCC-------eEEcc
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCV-KTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI-------LHSLG 183 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~-~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~-------w~~~~ 183 (400)
.++.|+.+ ..+..||. .+++...+...+....-.+++...+..++.......+..+|..+.. ...+.
T Consensus 71 ~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 71 QIYVGTVQ-----GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp EEEEEETT-----SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred EEEEEcCC-----CeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 45556544 46888998 8777665544112222223343333314444556678888876400 11222
Q ss_pred CCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCC-Cc--eEEccCCCCcccccEEEEe--CCEEEEEcCccccC
Q psy2979 184 SLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTK-NE--WSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILED 258 (400)
Q Consensus 184 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~-~~--W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~ 258 (400)
.+..+..-.++....+. +++|+.+ ..+..||..+ .. ...... +....-.+++.. ++..+++|+. +
T Consensus 146 ~~~~~~~v~~~~~~~~~-l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~---d 215 (342)
T 1yfq_A 146 NTKVKNKIFTMDTNSSR-LIVGMNN-----SQVQWFRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSI---D 215 (342)
T ss_dssp SSSSCCCEEEEEECSSE-EEEEEST-----TEEEEEESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEET---T
T ss_pred EEeeCCceEEEEecCCc-EEEEeCC-----CeEEEEECCccccccceeeec-CCCCceeEEEECCCCCCEEEEEec---C
Confidence 22222223334444555 5555543 4688899887 33 222211 111111222332 5677777776 4
Q ss_pred CCCcceEEEEeCCCC--------ceeeccCCC--C---CceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 259 GDGIEQVQRYNPKVN--------QWQDLAPML--I---PRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 259 ~~~~~~v~~yd~~~~--------~W~~~~~~~--~---~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+ .+..||.... ......... . .......+.. ++.+++.|+. ...+..||..+.+.
T Consensus 216 g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 216 G----RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS------DGIISCWNLQTRKK 285 (342)
T ss_dssp S----EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET------TSCEEEEETTTTEE
T ss_pred C----cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC------CceEEEEcCccHhH
Confidence 4 4555554333 111111100 0 0011122222 5676777765 45799999988764
Q ss_pred EEccCCcCc--cCcceEEEECCEEEEEcCc
Q psy2979 324 EYKSPMKEK--RYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 324 ~~~~~~~~~--~~~~~~~~~~~~lyv~GG~ 351 (400)
... ++.. ....+++ .+++.++.|+.
T Consensus 286 ~~~--~~~~h~~~v~~~~-~~~~~l~s~s~ 312 (342)
T 1yfq_A 286 IKN--FAKFNEDSVVKIA-CSDNILCLATS 312 (342)
T ss_dssp EEE--CCCCSSSEEEEEE-ECSSEEEEEEE
T ss_pred hhh--hhcccCCCceEec-CCCCeEEEEec
Confidence 332 2211 1112233 77888888876
No 260
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.58 E-value=4.3 Score=40.76 Aligned_cols=199 Identities=12% Similarity=0.021 Sum_probs=109.8
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCC----ceEEc-c-CCCCc
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKN----EWSYI-E-PMKLA 235 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~~-~-~l~~~ 235 (400)
.....+..++.....+..+..- .+.-.+++.. ++.||+.-.. ...+.++++... ....+ . .+..+
T Consensus 401 an~~~Ir~i~l~~~~~~~l~~~--~~~~~gl~~d~~~~~lY~sD~~-----~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 401 TNRHEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp ECBSSEEEECTTSCCCEEEECS--CSSEEEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccceeEeeccCCcceeeecC--CCceEEEeecccCCeeEEeecc-----ceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 3445677777777666655432 1222333333 6789987442 256788887642 22222 2 22222
Q ss_pred ccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEEE--CCeEEEEcCcCCCCCC
Q psy2979 236 VTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICAL--DSCIYVLGGWHASTEN 309 (400)
Q Consensus 236 ~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 309 (400)
.++++ .+++||+.-.. ...|+++++....-..+. .+..|+ ++++- ++.||+..-..
T Consensus 474 ---~GLAvD~~~~~LY~tD~~-------~~~I~v~~ldG~~~~~l~~~~l~~P~---gIaVDp~~g~LYwtD~g~----- 535 (791)
T 3m0c_C 474 ---DGLAVDWIHSNIYWTDSV-------LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWGT----- 535 (791)
T ss_dssp ---CEEEEETTTTEEEEEETT-------TTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECSS-----
T ss_pred ---ceeeeeecCCcEEEEecC-------CCeEEEEeCCCCeEEEEEeCCCCCcc---eEEEecCCCCEEEecCCC-----
Confidence 23444 47899998655 458999999876655443 333332 34443 68999986210
Q ss_pred CCeEEEEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCC-CCCCcee
Q psy2979 310 TNRVECYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP-SARSWLG 385 (400)
Q Consensus 310 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~ 385 (400)
...|+++++....-..+.. .....+...++ +++||+.-.. .+.|+++|+....=+.+..-. .-....+
T Consensus 536 ~~~I~~~~~dG~~~~~lv~--~~l~~P~GLavD~~~~~LYwaD~~------~~~I~~~d~dG~~~~~v~~~~~~l~~P~g 607 (791)
T 3m0c_C 536 PAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFS 607 (791)
T ss_dssp SCEEEEEETTSCCEEEEEC--SSCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEECTTTTSSEEE
T ss_pred CCeEEEEecCCCceEEEEe--CCCCCceEEEEecCCCeEEEEeCC------CCcEEEEecCCCceEEEecCCCccCCCCE
Confidence 3689999987655444332 11223344444 6899998543 368999998765444432211 1112356
Q ss_pred eEEEcccccc
Q psy2979 386 CVPLQIHKSQ 395 (400)
Q Consensus 386 ~~~~~~~~~~ 395 (400)
+++.++.+|+
T Consensus 608 lav~~~~lYw 617 (791)
T 3m0c_C 608 LAVFEDKVFW 617 (791)
T ss_dssp EEEETTEEEE
T ss_pred EEEeCCEEEE
Confidence 6666665544
No 261
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=94.37 E-value=3 Score=38.07 Aligned_cols=149 Identities=13% Similarity=0.059 Sum_probs=80.4
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++.+++.|+.+ ..+..||+.+.+-...-..+........+.+ ++..++.|+. ++ .+..||..+.+.
T Consensus 181 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---dg----~i~iwd~~~~~~ 248 (437)
T 3gre_A 181 EKSLLVALTNL-----SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT---RG----IIDIWDIRFNVL 248 (437)
T ss_dssp SCEEEEEEETT-----SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET---TS----CEEEEETTTTEE
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC---CC----eEEEEEcCCccE
Confidence 46777777765 4688999988754322111101111122222 6777788877 54 689999887654
Q ss_pred eeccCCCCCceeeeEEEE-----CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEc-cCC----------c---------
Q psy2979 276 QDLAPMLIPRSGAAICAL-----DSCIYVLGGWHASTENTNRVECYHIAENTWEYK-SPM----------K--------- 330 (400)
Q Consensus 276 ~~~~~~~~~r~~~~~~~~-----~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~----------~--------- 330 (400)
...-..+....-.+++.. ++.+++.|+. ...+..||..+++-... ... |
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS------KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELN 322 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST------TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCC
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcC------CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccce
Confidence 332111211111122111 3456666665 45799999987763321 100 0
Q ss_pred -----CccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 331 -----EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 331 -----~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
......+++..++++++.||. + ..|.+||..+.+
T Consensus 323 ~~~~~~~~~v~~l~~~~~~~l~s~~~-d-----~~i~~wd~~~~~ 361 (437)
T 3gre_A 323 FCGIRSLNALSTISVSNDKILLTDEA-T-----SSIVMFSLNELS 361 (437)
T ss_dssp CCCCCSGGGGCCEEEETTEEEEEEGG-G-----TEEEEEETTCGG
T ss_pred ecccccCCceEEEEECCceEEEecCC-C-----CeEEEEECCCcc
Confidence 000112233447888888887 2 468888887654
No 262
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.30 E-value=3.1 Score=37.94 Aligned_cols=244 Identities=10% Similarity=0.036 Sum_probs=115.8
Q ss_pred ceEEEEEcCCCceEEccCCcccc-eeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAI-SKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFV 201 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~-~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~i 201 (400)
+++.++|..+++...+-.+.... .-.+++.. ++. .++. .....+..+|..+++-... +............++.+
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~~~~~~~~~--~~~h~~~v~~~s~~~~~ 201 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRN--MTSHSARVGSLSWNSYI 201 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEEETTE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEEEcCCCcEEEE--EeCCCCceEEEeeCCCE
Confidence 47899999998876554433222 22344444 334 3333 5556788899887653322 22111222233446667
Q ss_pred EEEcccCCCCCCCeEEEEeCCCCceEEc--cCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--eee
Q psy2979 202 YAVGGWDGSCRLDSVERYDPTKNEWSYI--EPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQD 277 (400)
Q Consensus 202 yv~GG~~~~~~~~~v~~yd~~~~~W~~~--~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~ 277 (400)
.+.|+.+ ..+..+|......... ..-. ..........++...+.|+. ++ .+..+|..+.+ +..
T Consensus 202 l~sgs~d-----~~i~~~d~~~~~~~~~~~~~h~-~~~~~~~~~~~g~~l~s~~~---D~----~v~i~~~~~~~~~~~~ 268 (420)
T 4gga_A 202 LSSGSRS-----GHIHHHDVRVAEHHVATLSGHS-QEVCGLRWAPDGRHLASGGN---DN----LVNVWPSAPGEGGWVP 268 (420)
T ss_dssp EEEEETT-----SEEEEEETTSSSCEEEEEECCS-SCEEEEEECTTSSEEEEEET---TS----CEEEEESSCCSSCSCC
T ss_pred EEEEeCC-----CceeEeeecccceeeEEecccc-cceeeeeecCCCCeeeeeec---cc----cceEEeecccccccee
Confidence 7777755 3466777665433211 1111 11111112235666667766 43 57777765543 111
Q ss_pred ccCCCCCce-eeeEEEE--CCeEEEE-cCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCc
Q psy2979 278 LAPMLIPRS-GAAICAL--DSCIYVL-GGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGE 351 (400)
Q Consensus 278 ~~~~~~~r~-~~~~~~~--~~~iyv~-GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~ 351 (400)
+........ -.+.+.. +..+++. ||.. ...+..||..+++-...-..... ...++.. ++.+++.+|.
T Consensus 269 ~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~-----D~~I~iwd~~t~~~~~~~~~~~~--v~~~~~~~~~~~lv~~sg~ 341 (420)
T 4gga_A 269 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTS-----DRHIRIWNVCSGACLSAVDAHSQ--VCSILWSPHYKELISGHGF 341 (420)
T ss_dssp SEEECCCSSCEEEEEECTTCTTEEEEEECTT-----TCEEEEEETTTTEEEEEEECSSC--EEEEEEETTTTEEEEEECT
T ss_pred eeeecccCCceeeeeeCCCcccEEEEEeecC-----CCEEEEEeCCccccceeeccccc--eeeeeecCCCCeEEEEEec
Confidence 111111111 1112222 4455544 4431 35788999988875443222211 1111112 4566665554
Q ss_pred cCCCCCCCeEEEEECCCCcEEEecCCCCCC-CceeeEEEccccccccc
Q psy2979 352 EGWDGYHDSIECYDVDNDSWEIMSHLPSAR-SWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~~~~~~~ 398 (400)
. ...|.+||..+.+ .+..+..-. .-.+++.-.+..+++.+
T Consensus 342 -~----d~~I~iwd~~~~~--~v~~l~gH~~~V~~l~~spdg~~l~S~ 382 (420)
T 4gga_A 342 -A----QNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGATVASA 382 (420)
T ss_dssp -T----TCCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred -C----CCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 2 2468889987653 333333211 12233444444555443
No 263
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.29 E-value=2.4 Score=37.31 Aligned_cols=65 Identities=8% Similarity=0.120 Sum_probs=40.9
Q ss_pred CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 294 DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 294 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
++..++.|+. ...+..||..+++-........... ..++.+ ++++++.|+. + ..|.+||..+.+-
T Consensus 138 ~~~~l~s~s~------dg~i~~wd~~~~~~~~~~~~~~~~~-i~~~~~~pdg~~lasg~~-d-----g~i~iwd~~~~~~ 204 (343)
T 3lrv_A 138 NTEYFIWADN------RGTIGFQSYEDDSQYIVHSAKSDVE-YSSGVLHKDSLLLALYSP-D-----GILDVYNLSSPDQ 204 (343)
T ss_dssp -CCEEEEEET------TCCEEEEESSSSCEEEEECCCSSCC-CCEEEECTTSCEEEEECT-T-----SCEEEEESSCTTS
T ss_pred CCCEEEEEeC------CCcEEEEECCCCcEEEEEecCCCCc-eEEEEECCCCCEEEEEcC-C-----CEEEEEECCCCCC
Confidence 4667777775 4578999998887644332222211 223333 6788888876 3 4688999988753
No 264
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=94.19 E-value=0.6 Score=38.94 Aligned_cols=102 Identities=8% Similarity=0.026 Sum_probs=58.9
Q ss_pred EeCCEEEEEcCccccCCCCcceEEEEe--CCC--C-----------ceeeccCCCCCceeeeEEEE--CCeEEEEcCcCC
Q psy2979 243 AHEGMLYVTGGAILEDGDGIEQVQRYN--PKV--N-----------QWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHA 305 (400)
Q Consensus 243 ~~~~~iyv~GG~~~~~~~~~~~v~~yd--~~~--~-----------~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~ 305 (400)
..++++|++-|. .+|+|+ +.+ + .|..++....+...=++... ++++|++-|.
T Consensus 70 ~~~g~~~fFKg~---------~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG~-- 138 (227)
T 3lp9_A 70 TENNEAFIFYEN---------FCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKGD-- 138 (227)
T ss_dssp CSTTEEEEEETT---------EEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEETT--
T ss_pred CCCCEEEEEeCC---------EEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEECC--
Confidence 368999999887 789998 321 1 12222211002122223332 6899999874
Q ss_pred CCCCCCeEEEEECCCCeEEE-----cc-CCcCc------cCcceEEE--ECCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 306 STENTNRVECYHIAENTWEY-----KS-PMKEK------RYRPGIAV--IDGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 306 ~~~~~~~v~~yd~~~~~W~~-----~~-~~~~~------~~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
..|+||..+++-.. +. .+|.. ..--++.. .++++|++-|. ..|+||..++
T Consensus 139 ------~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg~--------~Ywr~d~~~~ 202 (227)
T 3lp9_A 139 ------QYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKDD--------HYARVKVTPX 202 (227)
T ss_dssp ------EEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEETT--------EEEEEECCSS
T ss_pred ------EEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEECC--------EEEEEECCcc
Confidence 79999987654211 11 12211 11222333 25899999885 6799998876
No 265
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=94.17 E-value=2.7 Score=36.87 Aligned_cols=102 Identities=12% Similarity=0.004 Sum_probs=51.5
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEE-ccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCCCCeEEcc-CC
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKT-LSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMHKILHSLG-SL 185 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~-~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~~~w~~~~-~~ 185 (400)
.+++.|+.+ ..+.+||..+++-.. +.. ....-.+++.. ++. +++. .....+..+|..+++....- .+
T Consensus 86 ~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 86 PLLAVAGSR-----GIIRIINPITMQCIKHYVG--HGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp EEEEEEETT-----CEEEEECTTTCCEEEEEES--CCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CEEEEecCC-----CEEEEEEchhceEeeeecC--CCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 455666654 478888887765332 111 11112233333 334 3333 55567888998876543321 11
Q ss_pred C-CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCc
Q psy2979 186 K-FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNE 225 (400)
Q Consensus 186 ~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 225 (400)
. ....-.+++.. ++..++.|+.+ ..+..||..+.+
T Consensus 158 ~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 194 (366)
T 3k26_A 158 EGHRDEVLSADYDLLGEKIMSCGMD-----HSLKLWRINSKR 194 (366)
T ss_dssp TSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESCSHH
T ss_pred ccccCceeEEEECCCCCEEEEecCC-----CCEEEEECCCCc
Confidence 1 11111222222 45566667655 358888887653
No 266
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=94.02 E-value=5 Score=39.38 Aligned_cols=178 Identities=12% Similarity=0.075 Sum_probs=86.9
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc-cEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS-PAV 241 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~-~~~ 241 (400)
.....+..+|..+++-...-. .+...-.+++. .++..++.|+.+ .++..||.....-..+......... ..+
T Consensus 449 s~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 522 (694)
T 3dm0_A 449 SWDGELRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRD-----RTIKLWNTLGECKYTISEGGEGHRDWVSC 522 (694)
T ss_dssp ETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETT-----SCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred eCCCcEEEEECCCCcceeEEe-CCCCCEEEEEEeCCCCEEEEEeCC-----CEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence 555678888987664321100 01111112222 255566667655 3577888765432222221111111 122
Q ss_pred EEe--CC--EEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCce-eeeEEE-ECCeEEEEcCcCCCCCCCCeEEE
Q psy2979 242 VAH--EG--MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRS-GAAICA-LDSCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 242 ~~~--~~--~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~ 315 (400)
+.+ ++ ..++.|+. ++ .+..||..+.+-... +..... -.+++. -++.+++.|+. ...+..
T Consensus 523 ~~~~~~~~~~~l~s~s~---d~----~v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg~~l~sg~~------Dg~i~i 587 (694)
T 3dm0_A 523 VRFSPNTLQPTIVSASW---DK----TVKVWNLSNCKLRST--LAGHTGYVSTVAVSPDGSLCASGGK------DGVVLL 587 (694)
T ss_dssp EEECSCSSSCEEEEEET---TS----CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEET------TSBCEE
T ss_pred EEEeCCCCcceEEEEeC---CC----eEEEEECCCCcEEEE--EcCCCCCEEEEEEeCCCCEEEEEeC------CCeEEE
Confidence 222 22 45666766 44 688899876653322 111111 112222 26778888876 457888
Q ss_pred EECCCCeEEEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 316 YHIAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 316 yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
||..+++-.. .+.......+++.. ++.+++. +. + +.|.+||..+++-
T Consensus 588 wd~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~-~~-~-----~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 588 WDLAEGKKLY--SLEANSVIHALCFSPNRYWLCA-AT-E-----HGIKIWDLESKSI 635 (694)
T ss_dssp EETTTTEEEE--CCBCSSCEEEEEECSSSSEEEE-EE-T-----TEEEEEETTTTEE
T ss_pred EECCCCceEE--EecCCCcEEEEEEcCCCcEEEE-Ec-C-----CCEEEEECCCCCC
Confidence 9988876432 22222111222222 4444443 33 1 3588999888754
No 267
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=94.00 E-value=1.9 Score=40.05 Aligned_cols=134 Identities=14% Similarity=0.136 Sum_probs=81.9
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEc--cCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI--EPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~--~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++++|++-| +..++||..+++.... +.+|. --++...++++|++-|. ..++||+.+.+-
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~w~gi~~---iDAA~~~~g~~YfFkG~---------~y~rfd~~~~~v 218 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQGN---------QFLRFNPVSGEV 218 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTTEEEEECCTTSCC---CSEEEEETTEEEEEETT---------EEEEECTTTCCC
T ss_pred CCeEEEEec-------ccEEEEecccceeecccCCCCCc---cchheeeCCceEEEECC---------EEEEEcCccCcc
Confidence 678898887 5689999988765432 23432 23555568999999887 789999866542
Q ss_pred e------------eccCCC------------------CCc-eeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 276 Q------------DLAPML------------------IPR-SGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 276 ~------------~~~~~~------------------~~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
. .++... .+. ..-+++. .++++|++-|. ..|++|...+.+
T Consensus 219 ~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~--------~yWR~~~~~~~~ 290 (460)
T 1qhu_A 219 PPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS--------HYWRLDTNRDGW 290 (460)
T ss_dssp CTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT--------EEEECTTGGGCC
T ss_pred cCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC--------EEEEEecCCCCc
Confidence 2 211110 011 1223333 47899999864 688888755432
Q ss_pred E--Ec----cCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 324 E--YK----SPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 324 ~--~~----~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
. .+ +.+|. .--++...++++|++-|. .+|+|+..+
T Consensus 291 ~p~~Is~~WpglP~--~IDAAf~~~~~~yfFkG~--------~yw~f~~~~ 331 (460)
T 1qhu_A 291 HSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQDT--------KVYVFLTKG 331 (460)
T ss_dssp CCEEGGGTCTTSCS--SCSEEEEETTEEEEEETT--------EEEEEECSB
T ss_pred CccchhhhccCCCC--CCcEEEEECCeEEEEeCC--------EEEEEeCCC
Confidence 1 11 12222 223344458999999875 688998653
No 268
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=93.75 E-value=2.4 Score=34.70 Aligned_cols=145 Identities=12% Similarity=0.051 Sum_probs=83.1
Q ss_pred eeEEEECCeEEEEEeecCEEEEEECCCCCeEE--c----cCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeC
Q psy2979 150 HGLVVSGRNTIYCLDIVDIVYVAASMHKILHS--L----GSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDP 221 (400)
Q Consensus 150 ~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~--~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 221 (400)
-+++...+. +|++. .+.+|.+++....+.. + +.+|. .--++... ++++|++-| +.+++|+.
T Consensus 27 DAi~~~~g~-~y~Fk-g~~~wr~~~~~~~~~p~~I~~~wp~Lp~--~iDAa~~~~~~~~iyfFkG-------~~~w~~~~ 95 (207)
T 1pex_A 27 DAITSLRGE-TMIFK-DRFFWRLHPQQVDAELFLTKSFWPELPN--RIDAAYEHPSHDLIFIFRG-------RKFWALNG 95 (207)
T ss_dssp SEEEEETTE-EEEEE-TTEEEEECSSSSCCEEEEHHHHCTTSCS--SCCEEEEETTTTEEEEEET-------TEEEEEST
T ss_pred eEEEeCCCc-EEEEE-CCEEEEEeCCCcCCCceehhHhccCCCC--CccEEEEeccCCcEEEEcc-------CEEEEEeC
Confidence 355667888 88883 3567777765433321 1 22332 11222223 589999987 56788864
Q ss_pred CCCce---EEccC--CCCcccccEEEE-e--CCEEEEEcCccccCCCCcceEEEEeCCCCceeec---------cCCCCC
Q psy2979 222 TKNEW---SYIEP--MKLAVTSPAVVA-H--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL---------APMLIP 284 (400)
Q Consensus 222 ~~~~W---~~~~~--l~~~~~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~---------~~~~~~ 284 (400)
.+-.- ..+.. +|.....--+|. . ++++|++-|. ..|+||..+++-..- +.+|
T Consensus 96 ~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG~---------~ywr~d~~~~~~d~gyPr~i~~~~~Gip-- 164 (207)
T 1pex_A 96 YDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN---------QVWRYDDTNHIMDKDYPRLIEEDFPGIG-- 164 (207)
T ss_dssp TCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT---------EEEEEETTTTEECSSCCCBHHHHSTTSC--
T ss_pred CeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeCC---------EEEEEeCcCccccCCCCccHHHcCCCCC--
Confidence 32211 22222 332212222333 2 5899999887 789999876542211 1122
Q ss_pred ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 285 RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 285 r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
..--++...++++|++-|. ..++||..+++=.
T Consensus 165 ~~iDaAf~~~g~~YfFkg~--------~y~rf~~~~~~v~ 196 (207)
T 1pex_A 165 DKVDAVYEKNGYIYFFNGP--------IQFEYSIWSNRIV 196 (207)
T ss_dssp SCCSEEEEETTEEEEEETT--------EEEEEETTTTEEE
T ss_pred CCccEEEEcCCcEEEEECC--------EEEEEeCCccEEe
Confidence 2233444569999999864 7999999877643
No 269
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=93.67 E-value=7.7 Score=40.30 Aligned_cols=226 Identities=7% Similarity=-0.078 Sum_probs=109.2
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCC---Cc------ceeeeEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLK---FD------FDVSGIA 195 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~---~~------r~~~~~~ 195 (400)
..++.++...+....+...... ......-++. .+++.....++.+|........+..-. .+ ....+++
T Consensus 226 ~~l~~~~~~g~~~~~l~~~~~~--~~~~~SpDG~-~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~ 302 (1045)
T 1k32_A 226 GQIYSTDLDGKDLRKHTSFTDY--YPRHLNTDGR-RILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAED 302 (1045)
T ss_dssp CEEEEEETTSCSCEECCCCCSS--CEEEEEESSS-CEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEE
T ss_pred eEEEEEeCCCCcceEecCCCCc--ceeeEcCCCC-EEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceee
Confidence 4566666655555554432211 1112223444 333334567788887554444332210 00 0111222
Q ss_pred E--ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEE-EEeCCC
Q psy2979 196 M--LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQ-RYNPKV 272 (400)
Q Consensus 196 ~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~-~yd~~~ 272 (400)
. -+++..+++. ...++.++..+++...+..-+.......... +++.+++++. ...++ .||..+
T Consensus 303 ~S~pdG~~la~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-------~~~l~~~~d~~~ 368 (1045)
T 1k32_A 303 FSPLDGDLIAFVS------RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-------EGDFLGIYDYRT 368 (1045)
T ss_dssp EEECGGGCEEEEE------TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-------TEEEEEEEETTT
T ss_pred ecCCCCCEEEEEE------cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-------CCceEEEEECCC
Confidence 2 2444333333 2457788887776555433222111111122 5554444433 24788 899988
Q ss_pred CceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCcc
Q psy2979 273 NQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEE 352 (400)
Q Consensus 273 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~ 352 (400)
.....+.. ...........-+++.++++.. ...++.+|..+++-..+..-........+..-+|+.+++++.+
T Consensus 369 ~~~~~l~~-~~~~~~~~~~SpDG~~la~~~~------~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~ 441 (1045)
T 1k32_A 369 GKAEKFEE-NLGNVFAMGVDRNGKFAVVAND------RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPL 441 (1045)
T ss_dssp CCEEECCC-CCCSEEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred CCceEecC-CccceeeeEECCCCCEEEEECC------CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecC
Confidence 77666541 1111222222226666666654 4589999999887666542211111111222266655555441
Q ss_pred C----CCCCCCeEEEEECCCCcEEEe
Q psy2979 353 G----WDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 353 ~----~~~~~~~v~~yd~~~~~W~~~ 374 (400)
. .......+++||..+++...+
T Consensus 442 ~~~~~~~~~~~~i~l~d~~~g~~~~l 467 (1045)
T 1k32_A 442 KHGETDGYVMQAIHVYDMEGRKIFAA 467 (1045)
T ss_dssp CSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred ccccccCCCCCeEEEEECCCCcEEEe
Confidence 1 012245899999998875554
No 270
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=93.66 E-value=3.5 Score=36.37 Aligned_cols=148 Identities=13% Similarity=0.137 Sum_probs=78.2
Q ss_pred EEEEe-ecCEEEEEECCCCCeEEccCCCC------c-ceeeeEEE----ECCEEEEEccc--C----CC--CCCCeEEEE
Q psy2979 160 IYCLD-IVDIVYVAASMHKILHSLGSLKF------D-FDVSGIAM----LDGFVYAVGGW--D----GS--CRLDSVERY 219 (400)
Q Consensus 160 iyv~~-~~~~~~~yd~~~~~w~~~~~~~~------~-r~~~~~~~----~~~~iyv~GG~--~----~~--~~~~~v~~y 219 (400)
+|+.. ....+..+||..+.-..+ ..+. + ....++.. -+++|+++.-. . +. .....+.+|
T Consensus 27 ~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~ 105 (334)
T 2p9w_A 27 FYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSF 105 (334)
T ss_dssp EEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEE
T ss_pred EEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEE
Confidence 55553 456788889886654444 2221 1 22345555 25688886211 0 11 124679999
Q ss_pred eCC---CC--ceEE-ccCCCCc-------ccc-c-EEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCc---eeeccC
Q psy2979 220 DPT---KN--EWSY-IEPMKLA-------VTS-P-AVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ---WQDLAP 280 (400)
Q Consensus 220 d~~---~~--~W~~-~~~l~~~-------~~~-~-~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~---W~~~~~ 280 (400)
|+. ++ .|.. ++..... ... . .+++ -+|.+||.+.. . ...|++++|.... |-.-.+
T Consensus 106 Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~---~---~~~I~rV~pdG~~~~~~~~~~~ 179 (334)
T 2p9w_A 106 NLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL---G---MPAIARVSADGKTVSTFAWESG 179 (334)
T ss_dssp ESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE---S---SCEEEEECTTSCCEEEEEECCC
T ss_pred cCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC---C---CCeEEEEeCCCCEEeeeeecCC
Confidence 988 44 3432 1111111 211 1 2222 37899998766 2 1479999997653 543222
Q ss_pred CCCCce-eeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 281 MLIPRS-GAAICAL-DS-CIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 281 ~~~~r~-~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
....+. ..+++.. ++ .|++..+ ...+++||+.+.
T Consensus 180 ~~~~~~G~nGIv~~pdg~~Liv~~~-------~g~L~~fD~~~p 216 (334)
T 2p9w_A 180 NGGQRPGYSGITFDPHSNKLIAFGG-------PRALTAFDVSKP 216 (334)
T ss_dssp CSSSCCSCSEEEEETTTTEEEEESS-------SSSEEEEECSSS
T ss_pred CcccccCcceEEEeCCCCEEEEEcC-------CCeEEEEcCCCC
Confidence 223333 3345555 45 4555443 346899998743
No 271
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=93.62 E-value=3.2 Score=35.86 Aligned_cols=146 Identities=11% Similarity=0.162 Sum_probs=73.1
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCC-------ceEEccCCCCcccccEEEEe--C--CEEEEEcCccccCCCCcceEEE
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKN-------EWSYIEPMKLAVTSPAVVAH--E--GMLYVTGGAILEDGDGIEQVQR 267 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~-------~W~~~~~l~~~~~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~v~~ 267 (400)
+.+++.|+.++ .+..||..++ .|..+..+............ + +..++.|+. ++ .+..
T Consensus 71 ~~~l~s~~~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg----~v~i 138 (351)
T 3f3f_A 71 GRIIASASYDK-----TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN---DG----ILRL 138 (351)
T ss_dssp CSEEEEEETTS-----CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET---TC----EEEE
T ss_pred CCEEEEEcCCC-----eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC---CC----cEEE
Confidence 66777777653 4777777664 23333332222222222222 3 667777776 43 7888
Q ss_pred EeCCCCc----eeec---c--CCC---CCceeeeEEEE----CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcC
Q psy2979 268 YNPKVNQ----WQDL---A--PML---IPRSGAAICAL----DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKE 331 (400)
Q Consensus 268 yd~~~~~----W~~~---~--~~~---~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 331 (400)
||..+.+ |... . ... ......++... ++..+++|+. ...+..++...+....+..++.
T Consensus 139 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 212 (351)
T 3f3f_A 139 YDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL------EQAIIYQRGKDGKLHVAAKLPG 212 (351)
T ss_dssp EECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET------TEEEEEEECTTSCEEEEEECCC
T ss_pred ecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC------CCcEEEEccCCCceeeeeecCC
Confidence 9876554 2211 0 111 11111112221 2667777765 3455566666666655444443
Q ss_pred ccCcceEEEE--CC----EEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 332 KRYRPGIAVI--DG----KIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 332 ~~~~~~~~~~--~~----~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
.......+.+ ++ ++++.|+. + ..|.+||..+
T Consensus 213 h~~~i~~~~~~p~~~~~~~~l~s~~~-d-----g~i~iwd~~~ 249 (351)
T 3f3f_A 213 HKSLIRSISWAPSIGRWYQLIATGCK-D-----GRIRIFKITE 249 (351)
T ss_dssp CCSCEEEEEECCCSSCSSEEEEEEET-T-----SCEEEEEEEE
T ss_pred CCcceeEEEECCCCCCcceEEEEEcC-C-----CeEEEEeCCC
Confidence 2222233333 44 77777776 3 3466777654
No 272
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=93.46 E-value=1.8 Score=37.78 Aligned_cols=143 Identities=15% Similarity=0.187 Sum_probs=74.1
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEE-ccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSY-IEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++..++.|+.+ ..+..||..+++-.. +..-..+. .+++. -++.+++.|+. ++ .+..||.....-
T Consensus 76 dg~~l~s~s~D-----~~v~~wd~~~~~~~~~~~~h~~~v--~~~~~~~~~~~l~s~s~---D~----~i~vwd~~~~~~ 141 (319)
T 3frx_A 76 DGAYALSASWD-----KTLRLWDVATGETYQRFVGHKSDV--MSVDIDKKASMIISGSR---DK----TIKVWTIKGQCL 141 (319)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSCE--EEEEECTTSCEEEEEET---TS----CEEEEETTSCEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCeeEEEccCCCcE--EEEEEcCCCCEEEEEeC---CC----eEEEEECCCCeE
Confidence 45666667655 468889998875322 21111111 11222 25677778877 54 688888765443
Q ss_pred eeccCCCCCceeeeEEEE-------CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEE
Q psy2979 276 QDLAPMLIPRSGAAICAL-------DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIY 346 (400)
Q Consensus 276 ~~~~~~~~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~ly 346 (400)
..+..-... -..+... ++..++.|+. ...+..||..+.+-... +.........+.+ +++++
T Consensus 142 ~~~~~h~~~--v~~~~~~~~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~sp~g~~l 211 (319)
T 3frx_A 142 ATLLGHNDW--VSQVRVVPNEKADDDSVTIISAGN------DKMVKAWNLNQFQIEAD--FIGHNSNINTLTASPDGTLI 211 (319)
T ss_dssp EEECCCSSC--EEEEEECCC------CCEEEEEET------TSCEEEEETTTTEEEEE--ECCCCSCEEEEEECTTSSEE
T ss_pred EEEeccCCc--EEEEEEccCCCCCCCccEEEEEeC------CCEEEEEECCcchhhee--ecCCCCcEEEEEEcCCCCEE
Confidence 332211111 1111111 2335666665 45788899877654321 1111111122233 67777
Q ss_pred EEcCccCCCCCCCeEEEEECCCCc
Q psy2979 347 VLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 347 v~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+.|+. + ..|.+||..+.+
T Consensus 212 ~s~~~-d-----g~i~iwd~~~~~ 229 (319)
T 3frx_A 212 ASAGK-D-----GEIMLWNLAAKK 229 (319)
T ss_dssp EEEET-T-----CEEEEEETTTTE
T ss_pred EEEeC-C-----CeEEEEECCCCc
Confidence 77776 2 468888887764
No 273
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.24 E-value=4.4 Score=36.29 Aligned_cols=180 Identities=10% Similarity=0.075 Sum_probs=93.1
Q ss_pred eecCEEEEEECCCCCeEEccC--CCCcc--eeeeEEE--ECCEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCCc
Q psy2979 164 DIVDIVYVAASMHKILHSLGS--LKFDF--DVSGIAM--LDGFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKLA 235 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~--~~~~r--~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~ 235 (400)
.....+..+|..+++-...-. .+... .-.++.. .++.+++.|+.++ .+..||+... .-..+..-..
T Consensus 177 s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~-----~v~~wd~~~~~~~~~~~~~h~~- 250 (380)
T 3iz6_a 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT-----TVRLWDLRITSRAVRTYHGHEG- 250 (380)
T ss_dssp CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS-----CEEEEETTTTCCCCEEECCCSS-
T ss_pred CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC-----eEEEEECCCCCcceEEECCcCC-
Confidence 344567788888776433211 11111 1112222 2567888888663 5888887632 1111111111
Q ss_pred ccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCC-----Cc--eeeeEEEECCeEEEEcCcCCCC
Q psy2979 236 VTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI-----PR--SGAAICALDSCIYVLGGWHAST 307 (400)
Q Consensus 236 ~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-----~r--~~~~~~~~~~~iyv~GG~~~~~ 307 (400)
.-.+++. -++..++.|+. |+ .+..||..+..-...-.... .. ....+...++.+++.|+.
T Consensus 251 -~v~~v~~~p~~~~l~s~s~---D~----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---- 318 (380)
T 3iz6_a 251 -DINSVKFFPDGQRFGTGSD---DG----TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS---- 318 (380)
T ss_dssp -CCCEEEECTTSSEEEEECS---SS----CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT----
T ss_pred -CeEEEEEecCCCeEEEEcC---CC----eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC----
Confidence 1112222 36778888887 55 68889988765332211110 00 111222337787788766
Q ss_pred CCCCeEEEEECCCCeEEE-ccCCcCccCc-ceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 308 ENTNRVECYHIAENTWEY-KSPMKEKRYR-PGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 308 ~~~~~v~~yd~~~~~W~~-~~~~~~~~~~-~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
...+..||..+.+-.. +..+...+.. -.++.+ +++.++.|+. + ..|.+||....
T Consensus 319 --dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D-----~~i~iW~~~~~ 376 (380)
T 3iz6_a 319 --NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW-D-----KNLKIWAFSGH 376 (380)
T ss_dssp --TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT-T-----SCEEEEECCSS
T ss_pred --CCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeC-C-----CCEEEEecCCC
Confidence 4579999987766432 3222222221 223333 6788888887 3 35677776653
No 274
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.20 E-value=1.5 Score=42.27 Aligned_cols=118 Identities=11% Similarity=0.141 Sum_probs=70.3
Q ss_pred EEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCCCc------eeeeEEEECCeEEEEcCcCCCCCCCC
Q psy2979 240 AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIPR------SGAAICALDSCIYVLGGWHASTENTN 311 (400)
Q Consensus 240 ~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r------~~~~~~~~~~~iyv~GG~~~~~~~~~ 311 (400)
+-++.++.+|+.... ..++++|..+.+ |+.-...+... ...+.+..+++||+... ..
T Consensus 63 ~P~v~~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg 127 (582)
T 1flg_A 63 QAIVSDGVIYVTASY--------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DA 127 (582)
T ss_dssp CCEEETTEEEEEETT--------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TT
T ss_pred ccEEECCEEEEEcCC--------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CC
Confidence 345689999998764 248999987655 88754333210 11334567889988643 35
Q ss_pred eEEEEECCCCe--EEEccCCcCcc--CcceEEEECC------EEEEEcCccCCCCCCCeEEEEECCCCc--EEE
Q psy2979 312 RVECYHIAENT--WEYKSPMKEKR--YRPGIAVIDG------KIYVLGGEEGWDGYHDSIECYDVDNDS--WEI 373 (400)
Q Consensus 312 ~v~~yd~~~~~--W~~~~~~~~~~--~~~~~~~~~~------~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 373 (400)
.+.++|..+++ |+.-...+... ...+-++.++ .||+-... ........++.||+++++ |+.
T Consensus 128 ~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~-~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 128 SVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSG-DEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBC-GGGCCBCEEEEECTTTCCEEEEE
T ss_pred EEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccc-cccCCCCEEEEEECCCCCEEeec
Confidence 79999998875 88643222111 1122234455 66653221 111234679999998875 864
No 275
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=93.16 E-value=6.5 Score=37.95 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=37.3
Q ss_pred CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 294 DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 294 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
++++++.|+. ...+..||..++....+.. .........+.+ +++.++.|+. + ..|..||..+
T Consensus 459 dg~~lasgs~------D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~-d-----~~v~~w~~~~ 522 (611)
T 1nr0_A 459 DKQFVAVGGQ------DSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQ-S-----RKVIPYSVAN 522 (611)
T ss_dssp TSCEEEEEET------TSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEET-T-----SCEEEEEGGG
T ss_pred CCCEEEEeCC------CCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcC-C-----CCEEEEEcCC
Confidence 6778888876 4578889888776644332 111111223333 6777777765 2 3577888765
No 276
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=93.12 E-value=4.6 Score=36.09 Aligned_cols=86 Identities=9% Similarity=0.148 Sum_probs=51.0
Q ss_pred CCeEEEEcCcCC-----CCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEEC
Q psy2979 294 DSCIYVLGGWHA-----STENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 294 ~~~iyv~GG~~~-----~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~ 366 (400)
++++|+....+. ... ..+++.+|+.+.+ .+..++.+. ..+++.- +..||+.++ +.|.+||+
T Consensus 265 g~~lyv~~~~~~~~~~~~~~-~~~v~viD~~t~~--~v~~i~~~~-p~~ia~spdg~~l~v~n~--------~~v~v~D~ 332 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFP-AAEIWVMDTKTKQ--RVARIPGRD-ALSMTIDQQRNLMLTLDG--------GNVNVYDI 332 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCC-CSEEEEEETTTTE--EEEEEECTT-CCEEEEETTTTEEEEECS--------SCEEEEEC
T ss_pred CCeEEEEEccCCCcccccCC-CceEEEEECCCCc--EEEEEecCC-eeEEEECCCCCEEEEeCC--------CeEEEEEC
Confidence 478998753111 112 4689999998886 344445444 3344333 445665442 57899998
Q ss_pred CCCcEEEecCC-CCCCCceeeEEEcc
Q psy2979 367 DNDSWEIMSHL-PSARSWLGCVPLQI 391 (400)
Q Consensus 367 ~~~~W~~~~~~-~~~r~~~~~~~~~~ 391 (400)
++.+-+.+..+ +.+..-..+++..+
T Consensus 333 ~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 333 SQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp SSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred CCCcceeeEEeccCCCCcEEEEecCC
Confidence 88644666664 45555556655443
No 277
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=93.00 E-value=4.8 Score=35.97 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=34.5
Q ss_pred CCEEEEEcCccC----CCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEccccccccc
Q psy2979 342 DGKIYVLGGEEG----WDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 342 ~~~lyv~GG~~~----~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
++++|+....+. .....+.|+++|.++. +.+..++.+. -.++++-.+..++++.
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--~~v~~i~~~~-p~~ia~spdg~~l~v~ 322 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--QRVARIPGRD-ALSMTIDQQRNLMLTL 322 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--EEEEEEECTT-CCEEEEETTTTEEEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCC--cEEEEEecCC-eeEEEECCCCCEEEEe
Confidence 488999753101 1112468999999887 4555666666 6777777666666654
No 278
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=92.91 E-value=5.1 Score=36.07 Aligned_cols=261 Identities=6% Similarity=-0.143 Sum_probs=119.7
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEee----------cCEEEEEECCCCCe
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDI----------VDIVYVAASMHKIL 179 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~----------~~~~~~yd~~~~~w 179 (400)
..+|+..+...... ..+.+||+.+++-. ..+|.....+-...-+++.+|+... .+.+..||+.+.+-
T Consensus 33 ~~~yv~~~~~~~~~-~~v~v~D~~t~~~~--~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~ 109 (373)
T 2mad_H 33 RRSYINLPAHHSAI-IQQWVLDAGSGSIL--GHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP 109 (373)
T ss_pred CEEEEeCCcccCCc-cEEEEEECCCCeEE--EEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE
Confidence 46777653111111 17899999887643 3444333332233335554888732 45688999987653
Q ss_pred EEccCCC-Ccc-------eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEE
Q psy2979 180 HSLGSLK-FDF-------DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVT 251 (400)
Q Consensus 180 ~~~~~~~-~~r-------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~ 251 (400)
...-+++ .+| ......--++.+|+..-. ..+++..+| .+++-... -++.+.. ......++..|+.
T Consensus 110 ~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~----~~~~v~viD-~t~~~~~~-~i~~~~~-~~~~~~~~~~~~~ 182 (373)
T 2mad_H 110 IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----AGPAVGLVV-QGGSSDDQ-LLSSPTC-YHIHPGAPSTFYL 182 (373)
T ss_pred EEEEECCCccccccCCCccceEECCCCCEEEEEecC----CCCeEEEEE-CCCCEEeE-EcCCCce-EEEEeCCCceEEE
Confidence 3211121 111 112222225578876321 135789999 88764332 0332221 1111223344443
Q ss_pred cCccccCCCCcceEEEEeCCCCcee-ecc-----CCCCCceeeeE-EEECCeEEEEcCcCCCCCCCCeEEEEECCCCe--
Q psy2979 252 GGAILEDGDGIEQVQRYNPKVNQWQ-DLA-----PMLIPRSGAAI-CALDSCIYVLGGWHASTENTNRVECYHIAENT-- 322 (400)
Q Consensus 252 GG~~~~~~~~~~~v~~yd~~~~~W~-~~~-----~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-- 322 (400)
-.. ++ .+..+|. +.+-. ... ..+.+...+.. ...++++|+.. . ...++..|..++.
T Consensus 183 ~~~---dg----~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~------~~~v~vid~~~~~~~ 247 (373)
T 2mad_H 183 LCA---QG----GLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-Y------SGKILQADISAAGAT 247 (373)
T ss_pred EcC---CC----CEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-C------CceEEEEeccCCcce
Confidence 222 22 4555665 33322 110 11122212211 22245555544 2 3467777775543
Q ss_pred ----EEEccCC--cCc--cCcceEEEE---CCEEEEEcCccC---CCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEE
Q psy2979 323 ----WEYKSPM--KEK--RYRPGIAVI---DGKIYVLGGEEG---WDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVP 388 (400)
Q Consensus 323 ----W~~~~~~--~~~--~~~~~~~~~---~~~lyv~GG~~~---~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 388 (400)
|...... ... ..+.....+ ++++|+...... .....+.|+++|..+. +.+..++.+..-+++++
T Consensus 248 v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--~vv~~i~~g~~p~~i~~ 325 (373)
T 2mad_H 248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--QTSSQISLGHDVDAISV 325 (373)
T ss_pred EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC--EEEEEEECCCCcCeEEE
Confidence 3221110 000 011111222 578999753201 1123468999998775 44444555555566666
Q ss_pred Ecccc-cccc
Q psy2979 389 LQIHK-SQFV 397 (400)
Q Consensus 389 ~~~~~-~~~~ 397 (400)
-.+.. .+++
T Consensus 326 s~Dg~~~l~v 335 (373)
T 2mad_H 326 AQDGGPDLYA 335 (373)
T ss_pred CCCCCeEEEE
Confidence 65544 3443
No 279
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=92.77 E-value=10 Score=39.30 Aligned_cols=114 Identities=8% Similarity=-0.050 Sum_probs=61.7
Q ss_pred CCeEEEEEeecCEEE-EEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCC
Q psy2979 156 GRNTIYCLDIVDIVY-VAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK 233 (400)
Q Consensus 156 ~~~~iyv~~~~~~~~-~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~ 233 (400)
++..++.......++ .+|..+++...+. ........++. -+++.+++++.. ..+..+|+.+++-..+..-.
T Consensus 347 dg~~l~~~s~~~~l~~~~d~~~~~~~~l~--~~~~~~~~~~~SpDG~~la~~~~~-----~~v~~~d~~tg~~~~~~~~~ 419 (1045)
T 1k32_A 347 TKVAFIHGTREGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRNGKFAVVANDR-----FEIMTVDLETGKPTVIERSR 419 (1045)
T ss_dssp SEEEEEEEETTEEEEEEEETTTCCEEECC--CCCCSEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEECS
T ss_pred CCCeEEEEECCCceEEEEECCCCCceEec--CCccceeeeEECCCCCEEEEECCC-----CeEEEEECCCCceEEeccCC
Confidence 444244433345788 8898887766554 11111122222 255555555433 47899999988776654222
Q ss_pred CcccccEEEEeCCEEEEEcCccccCC------CCcceEEEEeCCCCceeecc
Q psy2979 234 LAVTSPAVVAHEGMLYVTGGAILEDG------DGIEQVQRYNPKVNQWQDLA 279 (400)
Q Consensus 234 ~~~~~~~~~~~~~~iyv~GG~~~~~~------~~~~~v~~yd~~~~~W~~~~ 279 (400)
.......+..-+++..++++. ++ .....++.||..+.+...+.
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~---~~~~~~~~~~~~~i~l~d~~~g~~~~l~ 468 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFP---LKHGETDGYVMQAIHVYDMEGRKIFAAT 468 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEE---ECSSTTCSCCEEEEEEEETTTTEEEECS
T ss_pred CCCccceEECCCCCeEEEEec---CccccccCCCCCeEEEEECCCCcEEEee
Confidence 222222233346665555544 21 11458999999887755554
No 280
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=92.75 E-value=6.8 Score=37.12 Aligned_cols=201 Identities=12% Similarity=0.082 Sum_probs=97.4
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV 242 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~ 242 (400)
.....+..+|........+..-..+ -.+++. -+++.++.|+.+ ..+..||.....-..+.....+. .+++
T Consensus 363 ~~dg~v~~~~~~~~~~~~~~~~~~~--v~~~~~s~dg~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~~v--~~~~ 433 (577)
T 2ymu_A 363 SDDKTVKLWNRNGQLLQTLTGHSSS--VRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLTGHSSSV--WGVA 433 (577)
T ss_dssp ETTSEEEEEETTCCEEEEEECCSSC--EEEEEECTTSSCEEEEETT-----SEEEEECTTCCEEEEEECCSSCE--EEEE
T ss_pred eCCCEEEEEcCCCCEEEEecCCCCC--eEEEEECCCCCEEEEEeCC-----CEEEEEeCCCCEEEEecCCCCCe--EEEE
Confidence 4445677777544333322221111 111121 255666666654 35778886544333332222111 1122
Q ss_pred -EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEE-EECCeEEEEcCcCCCCCCCCeEEEEECCC
Q psy2979 243 -AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAIC-ALDSCIYVLGGWHASTENTNRVECYHIAE 320 (400)
Q Consensus 243 -~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~~ 320 (400)
.-+++.++.++. ++ .+..||.....-..+..-..+ -.+++ .-++++++.|+. ...+..||...
T Consensus 434 ~s~d~~~l~~~~~---d~----~v~~w~~~~~~~~~~~~~~~~--v~~~~~spd~~~las~~~------d~~i~iw~~~~ 498 (577)
T 2ymu_A 434 FSPDDQTIASASD---DK----TVKLWNRNGQLLQTLTGHSSS--VRGVAFSPDGQTIASASD------DKTVKLWNRNG 498 (577)
T ss_dssp ECTTSSEEEEEET---TS----EEEEEETTSCEEEEEECCSSC--EEEEEECTTSCEEEEEET------TSEEEEEETTS
T ss_pred ECCCCCEEEEEcC---CC----EEEEEECCCCEEEEEcCCCCC--EEEEEEcCCCCEEEEEeC------CCEEEEEcCCC
Confidence 236677777776 43 688888765544443322211 11222 226777777765 45788888655
Q ss_pred CeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEccccccccc
Q psy2979 321 NTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 321 ~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
..-..+.... .....+.+ ++++++.|+. + ..|.+||........+.. ....-.++++..+..+++.+
T Consensus 499 ~~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~-d-----g~v~lwd~~~~~~~~~~~--h~~~v~~~~fs~dg~~l~s~ 567 (577)
T 2ymu_A 499 QLLQTLTGHS---SSVRGVAFSPDGQTIASASD-D-----KTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDGQTIASA 567 (577)
T ss_dssp CEEEEEECCS---SCEEEEEECTTSSCEEEEET-T-----SEEEEECTTSCEEEEEEC--CSSCEEEEEECTTSSCEEEE
T ss_pred CEEEEEeCCC---CCEEEEEEcCCCCEEEEEEC-c-----CEEEEEeCCCCEEEEEcC--CCCCEEEEEEcCCCCEEEEE
Confidence 4333332211 11122233 6777777776 2 368888875544443322 11222345555565665544
Q ss_pred C
Q psy2979 399 K 399 (400)
Q Consensus 399 ~ 399 (400)
|
T Consensus 568 ~ 568 (577)
T 2ymu_A 568 S 568 (577)
T ss_dssp E
T ss_pred e
Confidence 3
No 281
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=92.74 E-value=0.86 Score=45.17 Aligned_cols=197 Identities=11% Similarity=0.034 Sum_probs=101.7
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCC----ceEEccCCCCcc-ccc
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKN----EWSYIEPMKLAV-TSP 239 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~~~~l~~~~-~~~ 239 (400)
..+..+++.+.....+... ...-.+++.. ++.||+.--. ...+.++++.+. .-..+ +.... .-.
T Consensus 386 ~~I~~id~~~~~~~~~~~~--~~~p~gla~d~~~~~Ly~sD~~-----~~~I~~~~~~g~~~~~~~~~~--i~~~~~~P~ 456 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTV--ISRDIQAPD 456 (699)
T ss_dssp TC-CEECTTSCCEECCSCC--CTTCCCCEEETTTTEEEECCTT-----TTSBEEEESCCCCC-CCCCCB--CCSCC--CC
T ss_pred cceEEEeCCCCcceeeecc--CcceEEEccccccCeEEEEecC-----CCeEEEEecCCCCCCcceEEE--EeCCCCCcc
Confidence 4566777777666544322 1222334443 6789986322 246888888751 11111 11111 112
Q ss_pred EEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEE--ECCeEEEEcCcCCCCCCCCeE
Q psy2979 240 AVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICA--LDSCIYVLGGWHASTENTNRV 313 (400)
Q Consensus 240 ~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v 313 (400)
++++ .++.||+.-.. ...|.++++....-..+. .+..|+ ++++ .++.||+..-. . ...+
T Consensus 457 glavD~~~g~LY~tD~~-------~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~----~-~~~I 521 (699)
T 1n7d_A 457 GLAVDWIHSNIYWTDSV-------LGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG----T-PAKI 521 (699)
T ss_dssp CEECCCSSSBCEECCTT-------TSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS----S-SCCE
T ss_pred eEEEEeeCCcEEEEecc-------CCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC----C-CCeE
Confidence 3333 47889987543 347899998776544442 233332 2333 26788876521 1 2578
Q ss_pred EEEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCC-CCCCceeeEEE
Q psy2979 314 ECYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP-SARSWLGCVPL 389 (400)
Q Consensus 314 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~ 389 (400)
+++++....-..+... ....+...++ +++||+.-.. .+.|+++|+....-+.+...+ ....-.++++.
T Consensus 522 ~~~~~dG~~~~~l~~~--~l~~PnGlavd~~~~~LY~aD~~------~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd 593 (699)
T 1n7d_A 522 KKGGLNGVDIYSLVTE--NIQWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 593 (699)
T ss_dssp EBCCSSSCCCCEESCS--SCSSCCCEEECTTTCCEEEEETT------TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEE
T ss_pred EEEeCCCCCeeEEEeC--CCCCccEEEEeccCCEEEEEecC------CCeEEEEccCCCceEEEEecCCcCCCceEeEEE
Confidence 8888765433332211 1222333444 5789997643 367999998765444443221 11223556665
Q ss_pred cccccc
Q psy2979 390 QIHKSQ 395 (400)
Q Consensus 390 ~~~~~~ 395 (400)
++.+|+
T Consensus 594 ~~~lyw 599 (699)
T 1n7d_A 594 EDKVFW 599 (699)
T ss_dssp TTEEEE
T ss_pred CCEEEE
Confidence 554443
No 282
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=92.74 E-value=0.12 Score=36.84 Aligned_cols=44 Identities=34% Similarity=0.470 Sum_probs=36.0
Q ss_pred eEEEE-CCeEEehhhHHHhhcCcccccc---------ceeecCCCCHHHHHHHhh
Q psy2979 20 VTLCV-DGSKFPAHRVVLAASSPYFKVL---------ETIRLPQLSPYFLHDCVE 64 (400)
Q Consensus 20 v~l~~-~~~~~~~hr~vLaa~s~yf~~m---------~~vrl~~l~~~~l~~~i~ 64 (400)
|+|+. ||+.|..+|.+ |.+|.+++.| ..|.||.++...|...++
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVie 59 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVE 59 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHH
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHH
Confidence 67777 99999999997 8999999877 368999999986665443
No 283
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=92.73 E-value=0.093 Score=37.21 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=35.1
Q ss_pred eEEEE-CCeEEehhhHHHhhcCcccccc------------ceeecCCCCHHHHHHHh
Q psy2979 20 VTLCV-DGSKFPAHRVVLAASSPYFKVL------------ETIRLPQLSPYFLHDCV 63 (400)
Q Consensus 20 v~l~~-~~~~~~~hr~vLaa~s~yf~~m------------~~vrl~~l~~~~l~~~i 63 (400)
|+|.. ||++|..+|.+ |.+|++++.| ..|.||.++...|...+
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVi 58 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVC 58 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHH
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHH
Confidence 56766 89999999997 8999999877 25889999998665543
No 284
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=92.71 E-value=8.3 Score=38.00 Aligned_cols=237 Identities=8% Similarity=-0.010 Sum_probs=117.9
Q ss_pred cceEEEEEcCCCceEEccCCcc---cc--eeeeEEEE-CCeEEEEE-eec----CEEEEEECCCCCeEEccCCCCcceee
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPF---AI--SKHGLVVS-GRNTIYCL-DIV----DIVYVAASMHKILHSLGSLKFDFDVS 192 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~---~~--~~~~~~~~-~~~~iyv~-~~~----~~~~~yd~~~~~w~~~~~~~~~r~~~ 192 (400)
...++..+...++|..+.+... .. ...+.+.. ++..|... ... ..++.+|..+++...... .... ..
T Consensus 97 ~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~~-~~ 174 (710)
T 2xdw_A 97 QRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVK-FS 174 (710)
T ss_dssp SCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEEC-SC
T ss_pred EEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCcc-cc
Confidence 3456677666667765532221 11 11222333 44423222 211 178999999887765321 1111 12
Q ss_pred eEEEE-CC-EEEEEcccCCC-----------CCCCeEEEEeCCCCceE--EccCCC-CcccccEEE-EeCCEEEEEcCcc
Q psy2979 193 GIAML-DG-FVYAVGGWDGS-----------CRLDSVERYDPTKNEWS--YIEPMK-LAVTSPAVV-AHEGMLYVTGGAI 255 (400)
Q Consensus 193 ~~~~~-~~-~iyv~GG~~~~-----------~~~~~v~~yd~~~~~W~--~~~~l~-~~~~~~~~~-~~~~~iyv~GG~~ 255 (400)
+.+.. ++ .||.. ..... .....++.+++.+++.. .+-..+ .+....... .-+++..+++..
T Consensus 175 ~~~wspDg~~l~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~- 252 (710)
T 2xdw_A 175 CMAWTHDGKGMFYN-AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR- 252 (710)
T ss_dssp CEEECTTSSEEEEE-ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE-
T ss_pred eEEEEeCCCEEEEE-EECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE-
Confidence 23333 44 44443 33222 22356888898887632 221212 122112222 234543333332
Q ss_pred ccCCCC-cceEEEEeCCC------C--ceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCC---eE
Q psy2979 256 LEDGDG-IEQVQRYNPKV------N--QWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAEN---TW 323 (400)
Q Consensus 256 ~~~~~~-~~~v~~yd~~~------~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~---~W 323 (400)
.+.. .+.++.+|..+ . .+..+..-..... .....-++.||+.+..+.. ...++.+|..+. .|
T Consensus 253 --~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~---~~~l~~~d~~~~~~~~~ 326 (710)
T 2xdw_A 253 --EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRHSP---NYRLINIDFTDPEESKW 326 (710)
T ss_dssp --CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTTCT---TCEEEEEETTSCCGGGC
T ss_pred --ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCCCC---CCEEEEEeCCCCCcccc
Confidence 1111 35889999865 3 5776654322222 2222346778888754322 458999998876 48
Q ss_pred EEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCc-EEEe
Q psy2979 324 EYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDS-WEIM 374 (400)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~ 374 (400)
+.+.+.........+... ++++++.... + ....++++|+.+++ .+.+
T Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~lv~~~~~-~---g~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 327 KVLVPEHEKDVLEWVACVRSNFLVLCYLH-D---VKNTLQLHDLATGALLKIF 375 (710)
T ss_dssp EEEECCCSSCEEEEEEEETTTEEEEEEEE-T---TEEEEEEEETTTCCEEEEE
T ss_pred eeccCCCCCCeEEEEEEEcCCEEEEEEEE-C---CEEEEEEEECCCCCEEEec
Confidence 776543221122234445 7788777654 2 23578999986654 4444
No 285
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=92.67 E-value=7.9 Score=37.67 Aligned_cols=197 Identities=14% Similarity=0.077 Sum_probs=114.4
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAV 241 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~ 241 (400)
.....+...|+.+..-...-+++.-+...+++.. ++.||+.--. ...+.++++.....+.+...... .-.++
T Consensus 12 s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~-----~~~I~r~~~~g~~~~~v~~~g~~-~P~Gl 85 (628)
T 4a0p_A 12 SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDIS-----LKTISRAFMNGSALEHVVEFGLD-YPEGM 85 (628)
T ss_dssp EETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSSCS-CCCEE
T ss_pred EeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECC-----CCeEEEEECCCCCcEEEEeCCCC-CcceE
Confidence 3456677788876554433333322333444443 6899997432 35788999887666554332211 12244
Q ss_pred EE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeec--cCCCCCceeeeEEEE--CCeEEEEc-CcCCCCCCCCeEE
Q psy2979 242 VA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL--APMLIPRSGAAICAL--DSCIYVLG-GWHASTENTNRVE 314 (400)
Q Consensus 242 ~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~~~r~~~~~~~~--~~~iyv~G-G~~~~~~~~~~v~ 314 (400)
++ .+++||+.-.. ...++++++....-+.+ ..+..|+ ++++- ++.||+.. |. ...++
T Consensus 86 AvD~~~~~LY~tD~~-------~~~I~v~~~dG~~~~~l~~~~l~~P~---~iavdp~~G~lY~tD~g~------~~~I~ 149 (628)
T 4a0p_A 86 AVDWLGKNLYWADTG-------TNRIEVSKLDGQHRQVLVWKDLDSPR---ALALDPAEGFMYWTEWGG------KPKID 149 (628)
T ss_dssp EEETTTTEEEEEETT-------TTEEEEEETTSTTCEEEECSSCCCEE---EEEEETTTTEEEEEECSS------SCEEE
T ss_pred EEEeCCCEEEEEECC-------CCEEEEEecCCCcEEEEEeCCCCCcc---cEEEccCCCeEEEeCCCC------CCEEE
Confidence 44 57999998654 35899999866543332 2344442 34444 68999986 32 45899
Q ss_pred EEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec-CCCCCCCceeeEEEc
Q psy2979 315 CYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS-HLPSARSWLGCVPLQ 390 (400)
Q Consensus 315 ~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~ 390 (400)
+.++....-+.+.. ....+...++ +++||+.-.. .+.|+++|+....=+.+. .++.| .++++.+
T Consensus 150 r~~~dG~~~~~l~~---~~~~P~GlalD~~~~~LY~aD~~------~~~I~~~d~dG~~~~v~~~~l~~P---~glav~~ 217 (628)
T 4a0p_A 150 RAAMDGSERTTLVP---NVGRANGLTIDYAKRRLYWTDLD------TNLIESSNMLGLNREVIADDLPHP---FGLTQYQ 217 (628)
T ss_dssp EEETTSCSCEEEEC---SCSSEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEECCSCE---EEEEEET
T ss_pred EEeCCCCceEEEEC---CCCCcceEEEccccCEEEEEECC------CCEEEEEcCCCCceEEeeccCCCc---eEEEEEC
Confidence 99987665444432 2233344444 5899998543 467999998664333332 23333 5677666
Q ss_pred cccc
Q psy2979 391 IHKS 394 (400)
Q Consensus 391 ~~~~ 394 (400)
+..|
T Consensus 218 ~~ly 221 (628)
T 4a0p_A 218 DYIY 221 (628)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 5444
No 286
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=92.50 E-value=3.5 Score=37.72 Aligned_cols=143 Identities=10% Similarity=0.076 Sum_probs=68.7
Q ss_pred EEEEcccCCCCCCCeEEEEeCCCC---ceEEc--cCCC-CcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCC
Q psy2979 201 VYAVGGWDGSCRLDSVERYDPTKN---EWSYI--EPMK-LAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKV 272 (400)
Q Consensus 201 iyv~GG~~~~~~~~~v~~yd~~~~---~W~~~--~~l~-~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 272 (400)
+++.|+.+ ..+..||+.+. .+... ..+. ....-.+++.. ++.+++.|+. + ..+..||..+
T Consensus 196 ~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~---d----g~i~i~d~~~ 263 (430)
T 2xyi_A 196 YLLSASDD-----HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD---D----QKLMIWDTRN 263 (430)
T ss_dssp EEEEECTT-----SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET---T----SEEEEEETTC
T ss_pred eEEEEeCC-----CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC---C----CeEEEEECCC
Confidence 66667655 35888888763 22211 1111 11111122222 5677777776 4 3799999876
Q ss_pred Cc-eeeccCCCCCceeeeEEEE--CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CC-EE
Q psy2979 273 NQ-WQDLAPMLIPRSGAAICAL--DS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DG-KI 345 (400)
Q Consensus 273 ~~-W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~l 345 (400)
.. ...+..+.........+.. ++ .+++.|+. ...+..||..+.. ..+..+.........+.. ++ .+
T Consensus 264 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~------dg~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 264 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA------DKTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNETI 336 (430)
T ss_dssp SCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEET------TSEEEEEETTCTT-SCSEEEECCSSCEEEEEECSSCTTE
T ss_pred CCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeC------CCeEEEEeCCCCC-CCeEEeecCCCCEEEEEECCCCCCE
Confidence 52 1111111111111222222 33 47888876 5679999987632 001111111111122233 33 57
Q ss_pred EEEcCccCCCCCCCeEEEEECCC
Q psy2979 346 YVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 346 yv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
++.|+. + ..|.+||...
T Consensus 337 l~s~~~-d-----~~i~iwd~~~ 353 (430)
T 2xyi_A 337 LASSGT-D-----RRLHVWDLSK 353 (430)
T ss_dssp EEEEET-T-----SCCEEEEGGG
T ss_pred EEEEeC-C-----CcEEEEeCCC
Confidence 777776 2 3567777765
No 287
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=92.48 E-value=5.1 Score=35.03 Aligned_cols=187 Identities=10% Similarity=-0.041 Sum_probs=90.9
Q ss_pred cCEEEEEECCCCCeEEccCCCCcceeeeEEE-ECC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA 243 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~ 243 (400)
...++.+|..+++-..+. . ...... -++ .|+.... .+......++.+|..+++...+...+. ....+-
T Consensus 42 ~~~l~~~d~~~~~~~~l~-----~-~~~~~~SpDg~~la~~~~-~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~w 111 (347)
T 2gop_A 42 ENTIVIENLKNNARRFIE-----N-ATMPRISPDGKKIAFMRA-NEEKKVSEIWVADLETLSSKKILEAKN---IRSLEW 111 (347)
T ss_dssp EEEEEEEETTTCCEEEEE-----S-CEEEEECTTSSEEEEEEE-ETTTTEEEEEEEETTTTEEEEEEEESE---EEEEEE
T ss_pred cceEEEEeCCCCceEEcc-----c-CCCeEECCCCCEEEEEEe-ccCCCcceEEEEECCCCceEEEEcCCC---ccceeE
Confidence 456888888877655541 1 111111 144 4444332 211123468889998887766654332 111221
Q ss_pred -eCCE-EEEEcCccc--------------cCC-----CCcceEEEEeCCCCce-eeccCCCCCceeeeEEEECCeEEEEc
Q psy2979 244 -HEGM-LYVTGGAIL--------------EDG-----DGIEQVQRYNPKVNQW-QDLAPMLIPRSGAAICALDSCIYVLG 301 (400)
Q Consensus 244 -~~~~-iyv~GG~~~--------------~~~-----~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~~~~iyv~G 301 (400)
-+++ |++...... .++ .....++.+|..+.+. ..+.. + .....+...+.+++.+
T Consensus 112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg~~~~~ 187 (347)
T 2gop_A 112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDKIVVNV 187 (347)
T ss_dssp CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTEEEEEE
T ss_pred CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCeEEEEE
Confidence 2444 444331100 000 0035789999988876 55544 2 2222333333355555
Q ss_pred CcCCCCC--C-CCeEEEEECCCCeEEEccCCcCccCcceEEEECCE-EEEEcCccCC--CCCCCeEEEEECCCCcEEEec
Q psy2979 302 GWHASTE--N-TNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGK-IYVLGGEEGW--DGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 302 G~~~~~~--~-~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~--~~~~~~v~~yd~~~~~W~~~~ 375 (400)
....... . ...++.+| ++++..+... .......-+|+ |+..+.. .. ......++.+| +++++.+.
T Consensus 188 ~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~----~~~~~~spdg~~l~~~~~~-~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 188 PHREIIPQYFKFWDIYIWE--DGKEEKMFEK----VSFYAVDSDGERILLYGKP-EKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp ECCCSSCCSSCCEEEEEEE--TTEEEEEEEE----ESEEEEEECSSCEEEEECC-SSSCCCSSCEEEEEC--SSCEEESS
T ss_pred ecccccccccccccEEEeC--CCceEEeccC----cceeeECCCCCEEEEEEcc-ccCCccccceEEEEC--CCceEecc
Confidence 3322100 0 34788888 7777666432 11112244665 4444432 21 12346899999 66676653
No 288
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=92.38 E-value=4.9 Score=37.24 Aligned_cols=148 Identities=11% Similarity=0.047 Sum_probs=82.2
Q ss_pred eeEEEECCeEEEEEeecCEEEEEECCCCCeEE--c----cCCCCcceeeeEEE--ECCEEEEEcccCCCCCCCeEEEEeC
Q psy2979 150 HGLVVSGRNTIYCLDIVDIVYVAASMHKILHS--L----GSLKFDFDVSGIAM--LDGFVYAVGGWDGSCRLDSVERYDP 221 (400)
Q Consensus 150 ~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~--~----~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~ 221 (400)
-+++...+. +|++.. +.+|+++.....+.. + +.+|.. --++.. .++++|++=| +.+|+|+.
T Consensus 266 DAi~~~~ge-~y~Fkg-~~~wr~~~~~~~~~p~~I~~~Wp~LP~~--iDAa~~~~~~g~~~fFKg-------~~~W~~~~ 334 (450)
T 1su3_A 266 DAITTIRGE-VMFFKD-RFYMRTNPFYPEVELNFISVFWPQLPNG--LEAAYEFADRDEVRFFKG-------NKYWAVQG 334 (450)
T ss_dssp SEEEEETTE-EEEEET-TEEEECCTTSSSCEEEEGGGTCTTSCSS--CCEEEEEGGGTEEEEEET-------TEEEEEET
T ss_pred ceEEecCCe-EEEEeC-CEEEEEcCCCCcccceehhHhccCCCCC--eeEEEEEcCCCeEEEEeC-------CEEEEecC
Confidence 456667888 998843 566777765433321 1 122221 112222 2689999977 56788774
Q ss_pred CCCc--e-EEcc---CCCCccccc-EEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceee-----cc-CCC-CCc
Q psy2979 222 TKNE--W-SYIE---PMKLAVTSP-AVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD-----LA-PML-IPR 285 (400)
Q Consensus 222 ~~~~--W-~~~~---~l~~~~~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-----~~-~~~-~~r 285 (400)
.+-. + ..+. .+|.....- ++... ++++|++-|. ..|+||..+.+-.. +. ..| .+.
T Consensus 335 ~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG~---------~yw~yd~~~~~~~~gYPk~I~~~fpgip~ 405 (450)
T 1su3_A 335 QNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN---------KYWRYDEYKRSMDPGYPKMIAHDFPGIGH 405 (450)
T ss_dssp TEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT---------EEEEEETTTTEECSSCSEEHHHHSTTSCS
T ss_pred CcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeCC---------EEEEEeCCCccccCCCCcchhhcCCCCCC
Confidence 3210 0 1111 123211122 22222 6899999886 79999987544321 11 111 122
Q ss_pred eeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE
Q psy2979 286 SGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEY 325 (400)
Q Consensus 286 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 325 (400)
.--+++..++++|++-|. ..|+||..+++=..
T Consensus 406 ~iDAA~~~~g~~YFFkg~--------~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 406 KVDAVFMKDGFFYFFHGT--------RQYKFDPKTKRILT 437 (450)
T ss_dssp CCSEEEEETTEEEEEETT--------EEEEEETTTTEEEE
T ss_pred CccEEEEcCCeEEEEeCC--------EEEEEECCcceEec
Confidence 233445568999999864 78999998876543
No 289
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=92.29 E-value=5.2 Score=35.34 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=42.5
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCC-----CcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK-----LAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~-----~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
+++||++.--........+.+||+.+++-...-.++ ....-..+++- ++.+|+..... .. ...+.+||+
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~--~~--~~~i~v~d~ 152 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP--DD--KAALIRVDL 152 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS--GG--GCEEEEEET
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc--CC--CCeEEEEEC
Confidence 578999742100011357999999988743322222 11122344444 57999985310 00 357999998
Q ss_pred CCCc-eeec
Q psy2979 271 KVNQ-WQDL 278 (400)
Q Consensus 271 ~~~~-W~~~ 278 (400)
.+.+ |..+
T Consensus 153 ~~g~~~r~~ 161 (343)
T 2qe8_A 153 QTGLAARVL 161 (343)
T ss_dssp TTCCEEEEC
T ss_pred CCCCEEEEe
Confidence 7654 5544
No 290
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=92.17 E-value=1.5 Score=36.50 Aligned_cols=99 Identities=12% Similarity=0.041 Sum_probs=60.2
Q ss_pred ECCEEEEEcccCCCCCCCeEEEEeCCC----CceEEc--------cCCCCc--ccccEEE-E--eCCEEEEEcCccccCC
Q psy2979 197 LDGFVYAVGGWDGSCRLDSVERYDPTK----NEWSYI--------EPMKLA--VTSPAVV-A--HEGMLYVTGGAILEDG 259 (400)
Q Consensus 197 ~~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~--------~~l~~~--~~~~~~~-~--~~~~iyv~GG~~~~~~ 259 (400)
.++++|++-| +.+++||..+ ++...- +.||.. ...--+| . .++++|.+-|.
T Consensus 69 ~~g~~~fFkg-------~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG~----- 136 (225)
T 3oyo_A 69 EASEAYVFSG-------NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGN----- 136 (225)
T ss_dssp STTEEEEEET-------TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEETT-----
T ss_pred CCCeEEEEcC-------CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeCC-----
Confidence 5789999987 5688886532 222111 223331 1122233 2 37899999887
Q ss_pred CCcceEEEEeCCCCceeecc-----CCCC------CceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECC
Q psy2979 260 DGIEQVQRYNPKVNQWQDLA-----PMLI------PRSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 260 ~~~~~v~~yd~~~~~W~~~~-----~~~~------~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
..|+||..+++...-| ..|. +..--++.. .++++|++-|. ..|+||..
T Consensus 137 ----~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~--------~ywr~d~~ 197 (225)
T 3oyo_A 137 ----KYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ--------NYVRIDFT 197 (225)
T ss_dssp ----EEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT--------EEEEEECC
T ss_pred ----eEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC--------EEEEEeCC
Confidence 7899997776654311 1221 223334444 37899999874 79999998
No 291
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=92.10 E-value=5.7 Score=34.71 Aligned_cols=221 Identities=7% Similarity=-0.065 Sum_probs=105.6
Q ss_pred cceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee---------------------------cCEEEEEECC
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI---------------------------VDIVYVAASM 175 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~---------------------------~~~~~~yd~~ 175 (400)
...++.+|..+++...+...+. ....+.. ++..|++... ...++.+|+.
T Consensus 84 ~~~l~~~~~~~g~~~~l~~~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILEAKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEESE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred cceEEEEECCCCceEEEEcCCC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 3468888888877666543332 2223333 4442444321 3568889998
Q ss_pred CCCe-EEccCCCCcceeeeEEEECCEEEEEcccCCCC---C-CCeEEEEeCCCCceEEccCCCCcccccEEEEeCCE-EE
Q psy2979 176 HKIL-HSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSC---R-LDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGM-LY 249 (400)
Q Consensus 176 ~~~w-~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~---~-~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~-iy 249 (400)
+++. ..+.. + .....+...+.+++.+...... . ...++.+| ++++..+..- .......-+|+ |+
T Consensus 161 ~~~~~~~l~~-~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~----~~~~~~spdg~~l~ 230 (347)
T 2gop_A 161 SEEVIEEFEK-P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK----VSFYAVDSDGERIL 230 (347)
T ss_dssp TTEEEEEEEE-E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE----ESEEEEEECSSCEE
T ss_pred CCeEEeeecC-C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEeccC----cceeeECCCCCEEE
Confidence 8776 55544 2 2222233333355555433221 1 45688888 7777665431 11222244555 44
Q ss_pred EEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC
Q psy2979 250 VTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP 328 (400)
Q Consensus 250 v~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 328 (400)
..+... ..+.. ...++.+| +.++..+.+-.........+..++ +|+.+..++ ...++ ++ +++...+..
T Consensus 231 ~~~~~~-~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~----~~~l~-~~--~g~~~~~~~ 299 (347)
T 2gop_A 231 LYGKPE-KKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEG----SVNLY-IW--DGEIKPIAK 299 (347)
T ss_dssp EEECCS-SSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETT----EEEEE-EE--SSSEEEEEC
T ss_pred EEEccc-cCCccccceEEEEC--CCceEeccccCCcccCCccEEcCc-EEEEEecCC----cEEEE-Ec--CCceEEEec
Confidence 443221 01111 45799999 566666643222111111222244 777665432 34677 77 344444322
Q ss_pred CcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCC
Q psy2979 329 MKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHL 377 (400)
Q Consensus 329 ~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 377 (400)
.. ...........+++.+.. . .....+|.+| ++.+.+...
T Consensus 300 ~~---~~v~~~~~s~~~~~~~~~-~--~~~~~l~~~~---g~~~~lt~~ 339 (347)
T 2gop_A 300 GR---HWIMGFDVDEIVVYLKET-A--TRLRELFTWD---GEEKQLTDY 339 (347)
T ss_dssp SS---SEEEEEEESSSEEEEEEC-S--SSCCEEEEES---SSEEECCCT
T ss_pred CC---CeEEeeeeeCcEEEEEcC-C--CChHHheEeC---CcEEEeccc
Confidence 11 111222222255555433 2 1224788887 455555443
No 292
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=92.02 E-value=4.3 Score=37.41 Aligned_cols=142 Identities=13% Similarity=0.076 Sum_probs=79.2
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCC-EEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEG-MLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++.||+.--. ..+.++|+.+++...+.+ ...+.. .++. -++ .||+.... ++.....+..+++.. .|
T Consensus 149 ~g~Lyv~d~~------~~I~~id~~~~~v~~~~~-~~~~P~-~ia~d~~G~~lyvad~~---~~~~~~~v~~~~~~g-~~ 216 (430)
T 3tc9_A 149 HNHLYLVGEQ------HPTRLIDFEKEYVSTVYS-GLSKVR-TICWTHEADSMIITNDQ---NNNDRPNNYILTRES-GF 216 (430)
T ss_dssp EEEEEEEEBT------EEEEEEETTTTEEEEEEC-CCSCEE-EEEECTTSSEEEEEECC---SCTTSEEEEEEEGGG-TS
T ss_pred CCeEEEEeCC------CcEEEEECCCCEEEEEec-CCCCcc-eEEEeCCCCEEEEEeCC---CCcccceEEEEeCCC-ce
Confidence 4789987431 578999999988877654 111111 2222 244 49998653 221123566676543 23
Q ss_pred e---eccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CC-EEEE
Q psy2979 276 Q---DLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DG-KIYV 347 (400)
Q Consensus 276 ~---~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~lyv 347 (400)
. .++.+..| +++++. ++.||+..-. ...+++||+.+..-..+...+.. ..+...++ ++ .||+
T Consensus 217 ~~~~~l~~~~~p---~giavdp~~g~lyv~d~~------~~~V~~~~~~~~~~~~~~~~~~~-~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 217 KVITELTKGQNC---NGAETHPINGELYFNSWN------AGQVFRYDFTTQETTPLFTIQDS-GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp CSEEEEEECSSC---CCEEECTTTCCEEEEETT------TTEEEEEETTTTEEEEEEECSSS-SCCEEEEECTTSSEEEE
T ss_pred eeeeeeccCCCc---eEEEEeCCCCEEEEEECC------CCEEEEEECCCCcEEEEEEcCCC-CcceeEEEcCCCCEEEE
Confidence 3 33333332 344444 6789988643 56899999988765444333221 22333334 44 4999
Q ss_pred EcCccCCCCCCCeEEEEECC
Q psy2979 348 LGGEEGWDGYHDSIECYDVD 367 (400)
Q Consensus 348 ~GG~~~~~~~~~~v~~yd~~ 367 (400)
.--. .+.|++||+.
T Consensus 287 ~d~~------~~~I~~~~~d 300 (430)
T 3tc9_A 287 VVVN------QHYILRSDYD 300 (430)
T ss_dssp EETT------TTEEEEEEEE
T ss_pred EECC------CCEEEEEeCC
Confidence 8543 3567776554
No 293
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=91.97 E-value=6.9 Score=35.41 Aligned_cols=109 Identities=8% Similarity=-0.162 Sum_probs=60.6
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEe----------ecCEEEEEECCCCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLD----------IVDIVYVAASMHKI 178 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~----------~~~~~~~yd~~~~~ 178 (400)
..+|+.-... ....+.+.++|..+++-. ..++.....+ +++. +++.+|+.. ..+.+..+|+.+++
T Consensus 45 ~~vyV~~~~~-~~~~~~V~ViD~~t~~v~--~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 45 RRVYVNDPAH-FAAVTQQFVIDGEAGRVI--GMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp TEEEEEECGG-GCSSEEEEEEETTTTEEE--EEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CEEEEEcCcc-cCCCCEEEEEECCCCeEE--EEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 5777764421 112368999999887643 2233232234 4444 455488874 24568999999887
Q ss_pred eEEccCCCC-cc-----eeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCce
Q psy2979 179 LHSLGSLKF-DF-----DVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEW 226 (400)
Q Consensus 179 w~~~~~~~~-~r-----~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 226 (400)
-..--+++. .| .-+.++.. +..+|+.... ..+++...|..+++=
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~----~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----PAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----SSCEEEEEETTTTEE
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC----CCCeEEEEECCCCcE
Confidence 543212221 11 11222222 4578886421 135789999988764
No 294
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=91.90 E-value=10 Score=37.18 Aligned_cols=104 Identities=13% Similarity=0.204 Sum_probs=55.2
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeec
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL 278 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~ 278 (400)
..++.|+.+ ..+..||..+.+-...-.-..... .+++ .-++.+++.|+. ++ .+..||..+.+-.
T Consensus 532 ~~l~s~s~d-----~~v~vwd~~~~~~~~~~~~h~~~v-~~v~~spdg~~l~sg~~---Dg----~i~iwd~~~~~~~-- 596 (694)
T 3dm0_A 532 PTIVSASWD-----KTVKVWNLSNCKLRSTLAGHTGYV-STVAVSPDGSLCASGGK---DG----VVLLWDLAEGKKL-- 596 (694)
T ss_dssp CEEEEEETT-----SCEEEEETTTCCEEEEECCCSSCE-EEEEECTTSSEEEEEET---TS----BCEEEETTTTEEE--
T ss_pred ceEEEEeCC-----CeEEEEECCCCcEEEEEcCCCCCE-EEEEEeCCCCEEEEEeC---CC----eEEEEECCCCceE--
Confidence 356666655 358889988765432211111111 1122 236778888887 54 6888898776532
Q ss_pred cCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 279 APMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 279 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
..+.......+++...+..+++++. ...+..||..+++-.
T Consensus 597 ~~~~~~~~v~~~~~sp~~~~l~~~~------~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 597 YSLEANSVIHALCFSPNRYWLCAAT------EHGIKIWDLESKSIV 636 (694)
T ss_dssp ECCBCSSCEEEEEECSSSSEEEEEE------TTEEEEEETTTTEEE
T ss_pred EEecCCCcEEEEEEcCCCcEEEEEc------CCCEEEEECCCCCCh
Confidence 2222222223333333333444443 356888998887643
No 295
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=91.76 E-value=4.4 Score=32.72 Aligned_cols=144 Identities=9% Similarity=0.075 Sum_probs=81.6
Q ss_pred eEEEECCeEEEEEeecCEEEEEECCCC--CeEE--c----cCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEe
Q psy2979 151 GLVVSGRNTIYCLDIVDIVYVAASMHK--ILHS--L----GSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYD 220 (400)
Q Consensus 151 ~~~~~~~~~iyv~~~~~~~~~yd~~~~--~w~~--~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd 220 (400)
+++..++. +|++.. +.+|+++.... .... + +.+|.. --++... ++++|++-| +..++|+
T Consensus 11 Ai~~~~g~-~yfFkg-~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~--IDAa~~~~~~~~~yfFkG-------~~yw~~~ 79 (195)
T 1itv_A 11 AIAEIGNQ-LYLFKD-GKYWRFSEGRGSRPQGPFLIADKWPALPRK--LDSVFEEPLSKKLFFFSG-------RQVWVYT 79 (195)
T ss_dssp EEEEETTE-EEEEET-TEEEEECCSSSCCCEEEEEHHHHCTTSCSS--CSEEEECTTTCCEEEEET-------TEEEEEE
T ss_pred EEEEeCCE-EEEEEC-CEEEEEECCccccCCCcEEhhhccCCCCCC--ccEEEEECCCCeEEEEeC-------CEEEEEc
Confidence 45567888 888843 66788876542 2211 1 223321 1122222 678999987 5678887
Q ss_pred CCCCce-EEcc--CCCCc--ccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceee-----cc-CCC-CCceee
Q psy2979 221 PTKNEW-SYIE--PMKLA--VTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD-----LA-PML-IPRSGA 288 (400)
Q Consensus 221 ~~~~~W-~~~~--~l~~~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-----~~-~~~-~~r~~~ 288 (400)
..+-.- ..+. .+|.. .-..+....++++|++-|. ..++||..+++-.. +. ..+ .|...-
T Consensus 80 ~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~---------~ywr~d~~~~~~~~gyPr~i~~~w~Gvp~~id 150 (195)
T 1itv_A 80 GASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR---------RLWRFDVKAQMVDPRSASEVDRMFPGVPLDTH 150 (195)
T ss_dssp TTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT---------EEEEEETTTTEECGGGCEEHHHHSTTSCSSCS
T ss_pred CCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeCC---------EEEEEeCCcccccCCCccChhhcCCCCCCCCC
Confidence 542111 0111 23322 2222223247899999876 78999987754321 11 011 122334
Q ss_pred eEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 289 AICALDSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 289 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
++...++.+|.+-|. ..++||..+.+
T Consensus 151 aa~~~~g~~Yffkg~--------~y~~~~~~~~~ 176 (195)
T 1itv_A 151 DVFQFREKAYFCQDR--------FYWRVSSRSEL 176 (195)
T ss_dssp EEEEETTEEEEEETT--------EEEEEECCTTC
T ss_pred EEEEeCCeEEEEeCC--------EEEEEECCccE
Confidence 555668999999874 78999987765
No 296
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=91.31 E-value=6.8 Score=34.01 Aligned_cols=219 Identities=11% Similarity=0.057 Sum_probs=99.5
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEE-ccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCC
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKT-LSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~-~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
..++.|+.+ ..+..+|..+++-.. +..- ...-.+++.. ++. +++. .....+..+|.....-..+..-.
T Consensus 78 ~~l~s~s~D-----~~v~~wd~~~~~~~~~~~~h--~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~~~~~~~~h~- 148 (319)
T 3frx_A 78 AYALSASWD-----KTLRLWDVATGETYQRFVGH--KSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHN- 148 (319)
T ss_dssp SEEEEEETT-----SEEEEEETTTTEEEEEEECC--SSCEEEEEECTTSC-EEEEEETTSCEEEEETTSCEEEEECCCS-
T ss_pred CEEEEEeCC-----CEEEEEECCCCCeeEEEccC--CCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEeccC-
Confidence 345556554 578889988775322 2111 1111222332 223 3332 44456777787644322221111
Q ss_pred cceeeeEEEE-------CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc-EEE-EeCCEEEEEcCccccC
Q psy2979 188 DFDVSGIAML-------DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP-AVV-AHEGMLYVTGGAILED 258 (400)
Q Consensus 188 ~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~-~~~-~~~~~iyv~GG~~~~~ 258 (400)
..-..+... ++..++.||.+ ..+..||..+.+-... +......- +++ .-+++.++.||. +
T Consensus 149 -~~v~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~sp~g~~l~s~~~---d 217 (319)
T 3frx_A 149 -DWVSQVRVVPNEKADDDSVTIISAGND-----KMVKAWNLNQFQIEAD--FIGHNSNINTLTASPDGTLIASAGK---D 217 (319)
T ss_dssp -SCEEEEEECCC------CCEEEEEETT-----SCEEEEETTTTEEEEE--ECCCCSCEEEEEECTTSSEEEEEET---T
T ss_pred -CcEEEEEEccCCCCCCCccEEEEEeCC-----CEEEEEECCcchhhee--ecCCCCcEEEEEEcCCCCEEEEEeC---C
Confidence 011111111 23355666655 3578888876543221 11111111 122 236778888887 5
Q ss_pred CCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCe-EEEccC-CcC---c
Q psy2979 259 GDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENT-WEYKSP-MKE---K 332 (400)
Q Consensus 259 ~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~-~~~---~ 332 (400)
+ .+..||..+.+-...-.... .-..++.. ++.+++.+. ...+..|+..... ...+.+ ... .
T Consensus 218 g----~i~iwd~~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~-------~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 284 (319)
T 3frx_A 218 G----EIMLWNLAAKKAMYTLSAQD--EVFSLAFSPNRYWLAAAT-------ATGIKVFSLDPQYLVDDLRPEFAGYSKA 284 (319)
T ss_dssp C----EEEEEETTTTEEEEEEECCS--CEEEEEECSSSSEEEEEE-------TTEEEEEEETTEEEEEEECCCCTTCCGG
T ss_pred C----eEEEEECCCCcEEEEecCCC--cEEEEEEcCCCCEEEEEc-------CCCcEEEEeCcCeeeeccCccccccccC
Confidence 4 78899987765221111111 11222222 455544443 2346666665443 222221 111 1
Q ss_pred cCc-ceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 333 RYR-PGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 333 ~~~-~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
... ...+.+ +|+.++.|+. + ..|.+||..+
T Consensus 285 ~~~~v~~~~~spdg~~l~sg~~-D-----g~i~vWd~~t 317 (319)
T 3frx_A 285 AEPHAVSLAWSADGQTLFAGYT-D-----NVIRVWQVMT 317 (319)
T ss_dssp GCCCEEEEEECTTSSEEEEEET-T-----SCEEEEEEEE
T ss_pred cCcceeEEEECCCCCEEEEeec-C-----ceEEEEEEee
Confidence 111 112233 7787788876 3 3577777654
No 297
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=90.98 E-value=7.7 Score=34.03 Aligned_cols=141 Identities=11% Similarity=0.077 Sum_probs=62.4
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEE-ccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCc
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKT-LSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD 188 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~-~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~ 188 (400)
.+++.|+.+ ..+..+|..+++... +.. ....-.+++.. ++..++.......+..+|.....-.........
T Consensus 89 ~~l~s~s~D-----~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 161 (343)
T 2xzm_R 89 CFAISSSWD-----KTLRLWDLRTGTTYKRFVG--HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161 (343)
T ss_dssp TEEEEEETT-----SEEEEEETTSSCEEEEEEC--CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSC
T ss_pred CEEEEEcCC-----CcEEEEECCCCcEEEEEcC--CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCC
Confidence 344556554 578888888765432 211 11111223333 333133334456677788764322222211111
Q ss_pred ceeeeEEEE--C----------CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccc
Q psy2979 189 FDVSGIAML--D----------GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAIL 256 (400)
Q Consensus 189 r~~~~~~~~--~----------~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~ 256 (400)
......+.. + +..++.|+.+ ..+..||.....-..+..-..+ ....+..-+++.++.|+.
T Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~h~~~-v~~~~~s~~g~~l~sgs~-- 233 (343)
T 2xzm_R 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWD-----GRLKVWNTNFQIRYTFKAHESN-VNHLSISPNGKYIATGGK-- 233 (343)
T ss_dssp SSCEEEEEECCCCCSCSCCCSSCCEEEEEETT-----SEEEEEETTTEEEEEEECCSSC-EEEEEECTTSSEEEEEET--
T ss_pred CceeeeeeeccccccccccCCCCCEEEEEcCC-----CEEEEEcCCCceeEEEcCcccc-ceEEEECCCCCEEEEEcC--
Confidence 111111111 1 1455666655 3577788432211111111111 111111236777788887
Q ss_pred cCCCCcceEEEEeCC
Q psy2979 257 EDGDGIEQVQRYNPK 271 (400)
Q Consensus 257 ~~~~~~~~v~~yd~~ 271 (400)
++ .+..||..
T Consensus 234 -dg----~v~iwd~~ 243 (343)
T 2xzm_R 234 -DK----KLLIWDIL 243 (343)
T ss_dssp -TC----EEEEEESS
T ss_pred -CC----eEEEEECC
Confidence 54 78889874
No 298
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=90.97 E-value=9.5 Score=35.06 Aligned_cols=109 Identities=8% Similarity=-0.203 Sum_probs=61.5
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEe----------ecCEEEEEECCCCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLD----------IVDIVYVAASMHKI 178 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~----------~~~~~~~yd~~~~~ 178 (400)
..+|+.-....... ..+.++|+.+++-. ..+|..... .+++. +++.+|+.. ..+.+..+|+.+++
T Consensus 85 ~~vyV~n~~~~~~~-~~VsVID~~t~~vv--~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 85 RRVYIQDPAHFAAI-TQQFVIDGSTGRIL--GMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp TEEEEEECTTTCSS-EEEEEEETTTTEEE--EEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CEEEEECCCcCCCC-CeEEEEECCCCEEE--EEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 56777654321111 78999999987643 233333333 34443 444488884 35679999999887
Q ss_pred eEEccCCC-Ccc-----eeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCce
Q psy2979 179 LHSLGSLK-FDF-----DVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEW 226 (400)
Q Consensus 179 w~~~~~~~-~~r-----~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 226 (400)
-..--+++ .+| .-+.++.- ++.+||..-. ..+++.++|+.+++=
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----~~~~VsVID~~t~kv 212 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----PAPAVGVVDLEGKTF 212 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----SSCEEEEEETTTTEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----CCCeEEEEECCCCeE
Confidence 54322222 111 11222222 4578886321 136799999998764
No 299
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=90.87 E-value=1.3 Score=36.87 Aligned_cols=102 Identities=12% Similarity=0.042 Sum_probs=59.3
Q ss_pred EECCEEEEEcccCCCCCCCeEEEEe--CCC--CceE----Ec----cCCCC---cccccEEEE--eCCEEEEEcCccccC
Q psy2979 196 MLDGFVYAVGGWDGSCRLDSVERYD--PTK--NEWS----YI----EPMKL---AVTSPAVVA--HEGMLYVTGGAILED 258 (400)
Q Consensus 196 ~~~~~iyv~GG~~~~~~~~~v~~yd--~~~--~~W~----~~----~~l~~---~~~~~~~~~--~~~~iyv~GG~~~~~ 258 (400)
..++++|++-| +.+++|+ +.+ ..-. .+ +.||. +..--++.. .++++|++-|.
T Consensus 70 ~~~g~~~fFKg-------~~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG~---- 138 (227)
T 3lp9_A 70 TENNEAFIFYE-------NFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKGD---- 138 (227)
T ss_dssp CSTTEEEEEET-------TEEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEETT----
T ss_pred CCCCEEEEEeC-------CEEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEECC----
Confidence 35899999987 5688888 321 1110 11 12331 111123333 26899999887
Q ss_pred CCCcceEEEEeCCCCceeec-----c-CCCC------CceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 259 GDGIEQVQRYNPKVNQWQDL-----A-PMLI------PRSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 259 ~~~~~~v~~yd~~~~~W~~~-----~-~~~~------~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
..|+||..+++-..- . .+|. +..--++.. .++++|++-|. ..|+||..++
T Consensus 139 -----~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg~--------~Ywr~d~~~~ 202 (227)
T 3lp9_A 139 -----QYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKDD--------HYARVKVTPX 202 (227)
T ss_dssp -----EEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEETT--------EEEEEECCSS
T ss_pred -----EEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEECC--------EEEEEECCcc
Confidence 799999876543221 0 1221 122333443 36899999874 7999998876
No 300
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=90.82 E-value=3.2 Score=38.24 Aligned_cols=148 Identities=11% Similarity=0.005 Sum_probs=80.1
Q ss_pred eEEEE---CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-C-CEEEEEcccCCCCCCCeEEEEeCCCCc
Q psy2979 151 GLVVS---GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-D-GFVYAVGGWDGSCRLDSVERYDPTKNE 225 (400)
Q Consensus 151 ~~~~~---~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~~~~ 225 (400)
.+++- ++. ||+......+..+|+..++...+.... ..-..++.- + +.||+.....+ .....+..++... .
T Consensus 141 ~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~~~--~~P~~ia~d~~G~~lyvad~~~~-~~~~~v~~~~~~g-~ 215 (430)
T 3tc9_A 141 WLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYSGL--SKVRTICWTHEADSMIITNDQNN-NDRPNNYILTRES-G 215 (430)
T ss_dssp EEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEECCC--SCEEEEEECTTSSEEEEEECCSC-TTSEEEEEEEGGG-T
T ss_pred EEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEecCC--CCcceEEEeCCCCEEEEEeCCCC-cccceEEEEeCCC-c
Confidence 44444 345 999854488999999988877665411 111122222 3 45898754322 1223455566543 3
Q ss_pred eE---EccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCe-EE
Q psy2979 226 WS---YIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSC-IY 298 (400)
Q Consensus 226 W~---~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~-iy 298 (400)
|. .++.+. .-+.+++. ++.||+.--. ...+++||+.+..-..+...+....-..++.. +++ ||
T Consensus 216 ~~~~~~l~~~~---~p~giavdp~~g~lyv~d~~-------~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 216 FKVITELTKGQ---NCNGAETHPINGELYFNSWN-------AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAY 285 (430)
T ss_dssp SCSEEEEEECS---SCCCEEECTTTCCEEEEETT-------TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred eeeeeeeccCC---CceEEEEeCCCCEEEEEECC-------CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEE
Confidence 32 333222 22344443 6889988543 34799999987765333322221111233333 454 99
Q ss_pred EEcCcCCCCCCCCeEEEEECC
Q psy2979 299 VLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 299 v~GG~~~~~~~~~~v~~yd~~ 319 (400)
+..-. ...+++|++.
T Consensus 286 v~d~~------~~~I~~~~~d 300 (430)
T 3tc9_A 286 IVVVN------QHYILRSDYD 300 (430)
T ss_dssp EEETT------TTEEEEEEEE
T ss_pred EEECC------CCEEEEEeCC
Confidence 98644 5678887654
No 301
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=90.82 E-value=12 Score=36.19 Aligned_cols=189 Identities=11% Similarity=0.097 Sum_probs=103.2
Q ss_pred eeeeEEEE--CCeEEEEEe-ecCEEEEEECCCCC-eEEccCCCCcceeeeEEE--ECCEEEEEcccCCCCCCCeEEEEeC
Q psy2979 148 SKHGLVVS--GRNTIYCLD-IVDIVYVAASMHKI-LHSLGSLKFDFDVSGIAM--LDGFVYAVGGWDGSCRLDSVERYDP 221 (400)
Q Consensus 148 ~~~~~~~~--~~~~iyv~~-~~~~~~~yd~~~~~-w~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~ 221 (400)
...++++. ++. ||+.+ ..+.++++++.... +..+-.-.. ..-.++++ .++.||+.-. ....++++++
T Consensus 41 ~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~-~~P~GlAvD~~~~~ly~~d~-----~~~~I~v~~~ 113 (619)
T 3s94_A 41 DAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGL-LSPDGLACDWLGEKLYWTDS-----ETNRIEVSNL 113 (619)
T ss_dssp CEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSC-SCEEEEEEETTTTEEEEEET-----TTTEEEEEET
T ss_pred ceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCC-CCcCeEEEEecCCEEEEEeC-----CCCEEEEEEC
Confidence 33455554 556 88883 34678888876542 232221110 12233444 3789999743 2367899998
Q ss_pred CCCceEEc--cCCCCcccccEEEE--eCCEEEEEc-CccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEEE-
Q psy2979 222 TKNEWSYI--EPMKLAVTSPAVVA--HEGMLYVTG-GAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICAL- 293 (400)
Q Consensus 222 ~~~~W~~~--~~l~~~~~~~~~~~--~~~~iyv~G-G~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~- 293 (400)
....-..+ ..+..|+ ++++ .++.||+.. |. ...+++.++....-+.+. .+..| .+++.-
T Consensus 114 dG~~~~~l~~~~l~~P~---~Iavdp~~g~ly~tD~g~-------~~~I~r~~~dG~~~~~l~~~~~~~P---~Glald~ 180 (619)
T 3s94_A 114 DGSLRKVLFWQELDQPR---AIALDPSSGFMYWTDWGE-------VPKIERAGMDGSSRFIIINSEIYWP---NGLTLDY 180 (619)
T ss_dssp TSCSCEEEECSSCSCCC---CEEEETTTTEEEEEECSS-------SCEEEEEETTSCSCEEEECSSCSSE---EEEEEET
T ss_pred CCCCEEEEEeCCCCCCc---eEEEecCCCeEEEeccCC-------CCEEEEEECCCCceEEEEeCCCCCC---cEEEEEc
Confidence 76543333 2333333 3444 478999985 22 247888888765444332 22222 334433
Q ss_pred -CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 294 -DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 294 -~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
+++||+.... ...++++|+....=..+... ....-+++++.+++||+.--. .+.|++.|..++
T Consensus 181 ~~~~LY~aD~~------~~~I~~~~~dG~~~~~~~~~-~~~~P~gi~~~~~~ly~td~~------~~~V~~~d~~tg 244 (619)
T 3s94_A 181 EEQKLYWADAK------LNFIHKSNLDGTNRQAVVKG-SLPHPFALTLFEDILYWTDWS------THSILACNKYTG 244 (619)
T ss_dssp TTTEEEEEETT------TCCEEEESSSCCEEC----------CCCEEESSSEEEEECTT------TCSEEEEESSSC
T ss_pred cCCEEEEEeCC------CCeEEEecCCCCccEEEEeC-CCCCceEEEEeCCEEEEecCC------CCEEEEEECCCC
Confidence 6899999765 56899999876543333210 111224666678899987533 345677776554
No 302
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=90.75 E-value=7.2 Score=33.31 Aligned_cols=247 Identities=10% Similarity=-0.015 Sum_probs=111.1
Q ss_pred ceEEEEEcCCCceEEccCCccc-ceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFA-ISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFV 201 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~-~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~i 201 (400)
.++.++|..+++..+.-.+... ..-.+++.. ++. .++. .....+..+|..+++-...-.... ........++.+
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~--~~~~~~~~~~~~ 121 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRNMTSHS--ARVGSLSWNSYI 121 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEEETTE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEEEeecCCceeEEEecCcc--ceEEEeecCCCE
Confidence 4789999999886654333322 222334443 333 3333 555678888988775432211111 111222334555
Q ss_pred EEEcccCCCCCCCeEEEEeCCCCceEEccC-CCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCcee--ec
Q psy2979 202 YAVGGWDGSCRLDSVERYDPTKNEWSYIEP-MKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ--DL 278 (400)
Q Consensus 202 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~--~~ 278 (400)
.+.|+.+ ..+..++..+........ -............++..++.|+. ++ .+..||..+.+-. ..
T Consensus 122 l~s~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~----~i~iwd~~~~~~~~~~~ 189 (318)
T 4ggc_A 122 LSSGSRS-----GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN---DN----LVNVWPSAPGEGGWVPL 189 (318)
T ss_dssp EEEEETT-----SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET---TS----CEEEEESSCBTTBSCCS
T ss_pred EEEEecC-----CceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec---Cc----ceeEEECCCCcccccce
Confidence 5555544 234445544443221110 01111111222235666677766 44 6888888754321 11
Q ss_pred cCCCCC-ceeeeEEEE--CCeE-EEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCC
Q psy2979 279 APMLIP-RSGAAICAL--DSCI-YVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGW 354 (400)
Q Consensus 279 ~~~~~~-r~~~~~~~~--~~~i-yv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~ 354 (400)
...... ..-...+.. ++.+ .+.+|.. ...+..+|..+..-..................++.+++.+|. .
T Consensus 190 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~-~- 262 (318)
T 4ggc_A 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTS-----DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF-A- 262 (318)
T ss_dssp EEECCCCSCEEEEEECTTSTTEEEEEECTT-----TCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECT-T-
T ss_pred eeecccCCceEEEEecCCCCcEEEEEecCC-----CCEEEEEecccccccccccceeeeeeeeecccccceEEEEEc-C-
Confidence 111111 111122222 3333 3334331 457888888777654433222221111111125566666554 2
Q ss_pred CCCCCeEEEEECCCCcEEEecCCCCCCC-ceeeEEEccccccccc
Q psy2979 355 DGYHDSIECYDVDNDSWEIMSHLPSARS-WLGCVPLQIHKSQFVD 398 (400)
Q Consensus 355 ~~~~~~v~~yd~~~~~W~~~~~~~~~r~-~~~~~~~~~~~~~~~~ 398 (400)
...|.+||..+.+ .+..+..-.. -.+++...+..+++.+
T Consensus 263 ---d~~i~iwd~~~~~--~~~~l~gH~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 263 ---QNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp ---TCCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred ---CCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 2468899987764 3333332112 2334444455555443
No 303
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=90.60 E-value=7.4 Score=33.22 Aligned_cols=143 Identities=14% Similarity=0.119 Sum_probs=71.6
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCCCcc-eeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLKFDF-DVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVT 237 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~ 237 (400)
++.+..-+.+..+|..+++....-.+.... .-.+++.. +++.++.|+.+ ..+..||..+++-.... .....
T Consensus 38 ~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D-----g~v~iw~~~~~~~~~~~--~~h~~ 110 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKRLRNM--TSHSA 110 (318)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEE--ECCSS
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC-----CcEEEeecCCceeEEEe--cCccc
Confidence 333333456778888887765433332221 12222222 56777778765 46888998887643321 11111
Q ss_pred ccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC-CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEE
Q psy2979 238 SPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML-IPRSGAAICALDSCIYVLGGWHASTENTNRVECY 316 (400)
Q Consensus 238 ~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y 316 (400)
.......++.+.+.|+. + ..+..++..+.......... ...........++..++.|+. ...+..|
T Consensus 111 ~~~~~~~~~~~l~s~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------d~~i~iw 177 (318)
T 4ggc_A 111 RVGSLSWNSYILSSGSR---S----GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN------DNLVNVW 177 (318)
T ss_dssp CEEEEEEETTEEEEEET---T----SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET------TSCEEEE
T ss_pred eEEEeecCCCEEEEEec---C----CceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec------CcceeEE
Confidence 22334445666666665 3 24555555444322211111 111112222235666666665 4568888
Q ss_pred ECCCCe
Q psy2979 317 HIAENT 322 (400)
Q Consensus 317 d~~~~~ 322 (400)
|..+++
T Consensus 178 d~~~~~ 183 (318)
T 4ggc_A 178 PSAPGE 183 (318)
T ss_dssp ESSCBT
T ss_pred ECCCCc
Confidence 887643
No 304
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=90.53 E-value=9 Score=34.08 Aligned_cols=139 Identities=8% Similarity=0.002 Sum_probs=75.4
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCce--eeeE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRS--GAAI 290 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~--~~~~ 290 (400)
..+..+|+.+.+.......... -.+++. -++++++.++. +.+..++..+.............. ....
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~~~--V~~v~fspdg~~l~s~s~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 226 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETRGE--VKDLHFSTDGKVVAYITG--------SSLEVISTVTGSCIARKTDFDKNWSLSKIN 226 (365)
T ss_dssp CEEEEEETTTTEEEEEEECSSC--CCEEEECTTSSEEEEECS--------SCEEEEETTTCCEEEEECCCCTTEEEEEEE
T ss_pred CEEEEeECCCCcEEEEeCCCCc--eEEEEEccCCceEEeccc--------eeEEEEEeccCcceeeeecCCCCCCEEEEE
Confidence 4688899988765443221111 122322 36777766654 256777776665443322222211 2222
Q ss_pred EEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC--CcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEEC
Q psy2979 291 CALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP--MKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 291 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~--~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~ 366 (400)
..-++..++.++.++.. ...+..+|.....+..... +........++.+ +|++++.|+. + ..|.+||.
T Consensus 227 fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~-D-----~~V~iwd~ 298 (365)
T 4h5i_A 227 FIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN-D-----NSIALVKL 298 (365)
T ss_dssp EEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET-T-----SCEEEEET
T ss_pred EcCCCCEEEEEecCCcc--eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC-C-----CEEEEEEC
Confidence 33478888877654432 2357777777766544322 1111112223333 7888888887 3 46889998
Q ss_pred CCCc
Q psy2979 367 DNDS 370 (400)
Q Consensus 367 ~~~~ 370 (400)
.+.+
T Consensus 299 ~~~~ 302 (365)
T 4h5i_A 299 KDLS 302 (365)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8764
No 305
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=90.43 E-value=8.6 Score=33.69 Aligned_cols=135 Identities=9% Similarity=0.006 Sum_probs=62.7
Q ss_pred eecCEEEEEECCCCCeEE-ccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEE
Q psy2979 164 DIVDIVYVAASMHKILHS-LGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAV 241 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~-~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~ 241 (400)
.....+..+|..+++... +.. ....-.+++.. ++..++.||.+ ..+..||.....-............-.+
T Consensus 95 s~D~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 95 SWDKTLRLWDLRTGTTYKRFVG--HQSEVYSVAFSPDNRQILSAGAE-----REIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp ETTSEEEEEETTSSCEEEEEEC--CCSCEEEEEECSSTTEEEEEETT-----SCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred cCCCcEEEEECCCCcEEEEEcC--CCCcEEEEEECCCCCEEEEEcCC-----CEEEEEeccCCceeeeecccCCCceeee
Confidence 445678888988765322 111 11111122222 45566667755 3577788764432222211111111111
Q ss_pred EEe--C----------CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCC
Q psy2979 242 VAH--E----------GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTEN 309 (400)
Q Consensus 242 ~~~--~----------~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 309 (400)
+.. + +..++.|+. ++ .+..||.....-..+..-..+ -......-+++.++.|+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~---d~----~i~iwd~~~~~~~~~~~h~~~-v~~~~~s~~g~~l~sgs~------ 233 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGW---DG----RLKVWNTNFQIRYTFKAHESN-VNHLSISPNGKYIATGGK------ 233 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEET---TS----EEEEEETTTEEEEEEECCSSC-EEEEEECTTSSEEEEEET------
T ss_pred eeeccccccccccCCCCCEEEEEcC---CC----EEEEEcCCCceeEEEcCcccc-ceEEEECCCCCEEEEEcC------
Confidence 111 1 246667776 44 688888432211111111111 111111226777777776
Q ss_pred CCeEEEEECC
Q psy2979 310 TNRVECYHIA 319 (400)
Q Consensus 310 ~~~v~~yd~~ 319 (400)
...+..||..
T Consensus 234 dg~v~iwd~~ 243 (343)
T 2xzm_R 234 DKKLLIWDIL 243 (343)
T ss_dssp TCEEEEEESS
T ss_pred CCeEEEEECC
Confidence 4578888874
No 306
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=90.42 E-value=13 Score=35.77 Aligned_cols=139 Identities=8% Similarity=-0.040 Sum_probs=68.0
Q ss_pred ceEEEEEcCCCceEE-ccC--C---cccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCC-cceeeeEE
Q psy2979 125 RSVEGFCVKTKVWKT-LSC--L---PFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKF-DFDVSGIA 195 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~-~~~--~---~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~-~r~~~~~~ 195 (400)
..+..+|..+++... +.. + .....-.+++.. ++. .++. .....+..+|..+.+....-.... .......+
T Consensus 212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~ 290 (611)
T 1nr0_A 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 290 (611)
T ss_dssp SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE
T ss_pred CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEE
Confidence 467788877765432 211 0 111122234443 344 3333 555678889988776543222111 11111122
Q ss_pred EECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 196 MLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 196 ~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
..++..++.++.+ ..+..||+.+++-.....-.... -.+++ .-+++..+.|+. ++ .+..||..+..
T Consensus 291 ~~~~~~l~s~s~d-----~~i~~~~~~~~~~~~~~~gh~~~-v~~l~~spdg~~l~s~s~---D~----~v~~Wd~~~~~ 357 (611)
T 1nr0_A 291 IWTKQALVSISAN-----GFINFVNPELGSIDQVRYGHNKA-ITALSSSADGKTLFSADA---EG----HINSWDISTGI 357 (611)
T ss_dssp EECSSCEEEEETT-----CCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEET---TS----CEEEEETTTCC
T ss_pred EEcCCEEEEEeCC-----CcEEEEeCCCCCcceEEcCCCCC-EEEEEEeCCCCEEEEEeC---CC----cEEEEECCCCc
Confidence 2355555555544 34777888776532211101111 11122 236777777776 54 68888987766
Q ss_pred eee
Q psy2979 275 WQD 277 (400)
Q Consensus 275 W~~ 277 (400)
...
T Consensus 358 ~~~ 360 (611)
T 1nr0_A 358 SNR 360 (611)
T ss_dssp EEE
T ss_pred eee
Confidence 544
No 307
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=90.38 E-value=6.2 Score=37.69 Aligned_cols=151 Identities=13% Similarity=0.048 Sum_probs=77.8
Q ss_pred EEEEEcccCCCCCCCeEEEEeC--CCCceEEccCCCCcccccEEEEeCC-EEEEEcCccccCCCCcceEEEEeCCCCcee
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDP--TKNEWSYIEPMKLAVTSPAVVAHEG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~--~~~~W~~~~~l~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 276 (400)
++.+.+...+......++..++ .... ..+...+..+ ..+...++ .++++.+. . +.+..||..+.+-.
T Consensus 76 ~~l~~~~~~~g~~~~~l~~~~~~~~g~~-~~l~~~~~~~--~~~~s~dg~~~~~~s~~---~----~~~~l~d~~~g~~~ 145 (582)
T 3o4h_A 76 RVILVRDVSKGAEQHALFKVNTSRPGEE-QRLEAVKPMR--ILSGVDTGEAVVFTGAT---E----DRVALYALDGGGLR 145 (582)
T ss_dssp EEEEEEECSTTSCCEEEEEEETTSTTCC-EECTTSCSBE--EEEEEECSSCEEEEEEC---S----SCEEEEEEETTEEE
T ss_pred eEEEEeccCCCCcceEEEEEeccCCCcc-ccccCCCCce--eeeeCCCCCeEEEEecC---C----CCceEEEccCCcEE
Confidence 5544443322222345666776 4332 2333332222 22333343 44444443 2 23457888887766
Q ss_pred eccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCC
Q psy2979 277 DLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGW 354 (400)
Q Consensus 277 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~ 354 (400)
.+...+. ......-+|+..++++.+... ...++.+|+.++++..+...+... ..... +|+.++.+.. +
T Consensus 146 ~l~~~~~---~~~~~spDG~~la~~~~~~~~--~~~i~~~d~~~g~~~~l~~~~~~~---~~~~~SpDG~~l~~~~~-~- 215 (582)
T 3o4h_A 146 ELARLPG---FGFVSDIRGDLIAGLGFFGGG--RVSLFTSNLSSGGLRVFDSGEGSF---SSASISPGMKVTAGLET-A- 215 (582)
T ss_dssp EEEEESS---CEEEEEEETTEEEEEEEEETT--EEEEEEEETTTCCCEEECCSSCEE---EEEEECTTSCEEEEEEC-S-
T ss_pred EeecCCC---ceEEECCCCCEEEEEEEcCCC--CeEEEEEcCCCCCceEeecCCCcc---ccceECCCCCEEEEccC-C-
Confidence 6643332 233344467666655543222 257999999999888765432211 22222 5654443332 1
Q ss_pred CCCCCeEEEEECCCCcEE
Q psy2979 355 DGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 355 ~~~~~~v~~yd~~~~~W~ 372 (400)
....|+++|+.+++.+
T Consensus 216 --~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 216 --REARLVTVDPRDGSVE 231 (582)
T ss_dssp --SCEEEEEECTTTCCEE
T ss_pred --CeeEEEEEcCCCCcEE
Confidence 1257999999998877
No 308
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=90.24 E-value=15 Score=36.12 Aligned_cols=193 Identities=11% Similarity=0.010 Sum_probs=100.0
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEEECC-EEEEEcccCC-------CCCCCeEEEEeCCCCce--EEccCCCC--
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAMLDG-FVYAVGGWDG-------SCRLDSVERYDPTKNEW--SYIEPMKL-- 234 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~-------~~~~~~v~~yd~~~~~W--~~~~~l~~-- 234 (400)
..++.+|..+++..... .+..+. .+.+..++ .||....... ......+++++..+.+= ..+-..+.
T Consensus 155 ~~i~v~dl~tg~~~~~~-~~~~k~-~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~ 232 (693)
T 3iuj_A 155 REIHLMDVESKQPLETP-LKDVKF-SGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ 232 (693)
T ss_dssp EEEEEEETTTCSEEEEE-EEEEES-CCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG
T ss_pred EEEEEEECCCCCCCccc-cCCcee-ccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC
Confidence 46888999998865431 111111 22222255 4554432211 12345688888776642 12222221
Q ss_pred cccccEE-EEeCCEEEEEcCccccCCCCcceEEEEeCCCC--ceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCC
Q psy2979 235 AVTSPAV-VAHEGMLYVTGGAILEDGDGIEQVQRYNPKVN--QWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTN 311 (400)
Q Consensus 235 ~~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 311 (400)
+....++ ..-+++..++... .+...+.++.+|..+. .|..+.+-...... .....++.+|+....+.. ..
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~---~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~~~~---~~ 305 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAA---NSTSGNRLYVKDLSQENAPLLTVQGDLDADVS-LVDNKGSTLYLLTNRDAP---NR 305 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEE---SSSSCCEEEEEETTSTTCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCT---TC
T ss_pred CeEEEEEEEcCCCCEEEEEEc---cCCCCcEEEEEECCCCCCceEEEeCCCCceEE-EEeccCCEEEEEECCCCC---CC
Confidence 1111122 2235543333221 1111358999998665 67776543222222 233457889988765332 45
Q ss_pred eEEEEECCCC---eEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 312 RVECYHIAEN---TWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 312 ~v~~yd~~~~---~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
.++.+|..+. .|+.+.+..... . .....++.|++..-. + ....++++|+.++..+.+
T Consensus 306 ~l~~~d~~~~~~~~~~~l~~~~~~~-~-~~s~~g~~lv~~~~~-~---g~~~l~~~d~~g~~~~~l 365 (693)
T 3iuj_A 306 RLVTVDAANPGPAHWRDLIPERQQV-L-TVHSGSGYLFAEYMV-D---ATARVEQFDYEGKRVREV 365 (693)
T ss_dssp EEEEEETTSCCGGGCEEEECCCSSC-E-EEEEETTEEEEEEEE-T---TEEEEEEECTTSCEEEEE
T ss_pred EEEEEeCCCCCccccEEEecCCCCE-E-EEEEECCEEEEEEEE-C---CeeEEEEEECCCCeeEEe
Confidence 8999998764 487765433222 2 455557777665433 2 235788999887655554
No 309
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=90.22 E-value=6 Score=39.39 Aligned_cols=128 Identities=13% Similarity=0.094 Sum_probs=70.4
Q ss_pred CCCceEEccCCCCcccccEEEE---eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEEE---
Q psy2979 222 TKNEWSYIEPMKLAVTSPAVVA---HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICAL--- 293 (400)
Q Consensus 222 ~~~~W~~~~~l~~~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~--- 293 (400)
.-++|+.+..+|.. ..... -++.+|+.+.. .+++=.-...+|+.+. .+|. ....+...
T Consensus 554 ~G~tW~~~~~~~~~---~~i~~~~~~~~~~~a~~~g---------~v~~S~DgG~tW~~~~~~~~p~--~~~~i~~~~~~ 619 (737)
T 2cn3_A 554 NGNSWKVCTNLGMG---AVVASDRVNGKKFYAFYNG---------KFYISTDGGLTFTDTKAPQLPK--SVNKIKAVPGK 619 (737)
T ss_dssp TTSSCEECBTCCTT---CEEEECSSCTTCEEEEETT---------EEEEESSTTSBCEECCCSSCCS--CCSEEEEETTE
T ss_pred CCCCCccCCCCCCC---ceEEEEecCCCEEEEecCC---------EEEEECCCCcCcccccCCCCCC--ccceEEEEeCC
Confidence 35689999866543 12222 24567776522 4555444567899874 3443 22233333
Q ss_pred CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEE--EC---CEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 294 DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAV--ID---GKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 294 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~---~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
++.+|+.+.. ..+++-+-...+|+.+...+.. ....... -+ +.||++|.. .. ...+++=+-..
T Consensus 620 ~g~l~~~~~~-------g~l~~S~D~G~tW~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~-g~---~~gl~~S~D~G 687 (737)
T 2cn3_A 620 EGHVWLAARE-------GGLWRSTDGGYTFEKLSNVDTA-HVVGFGKAAPGQDYMAIYITGKI-DN---VLGFFRSDDAG 687 (737)
T ss_dssp EEEEEEECBT-------TCEEEESSTTSSCEECTTCSEE-EEEEEECCCTTCSSCEEEEEEEE-TT---EEEEEEESSTT
T ss_pred CCEEEEEeCC-------CcEEEEeCCCcccEECcCCCcc-ceEEEeecCCCCCCcEEEEEEec-CC---cceEEEeCCCC
Confidence 4678887742 3566655555789999653322 1111111 12 278888633 11 12355555556
Q ss_pred CcEEEec
Q psy2979 369 DSWEIMS 375 (400)
Q Consensus 369 ~~W~~~~ 375 (400)
.+|+.+.
T Consensus 688 ~tW~~~~ 694 (737)
T 2cn3_A 688 KTWVRIN 694 (737)
T ss_dssp SSCEECS
T ss_pred CCCEecc
Confidence 7899996
No 310
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=89.88 E-value=2.6 Score=38.57 Aligned_cols=102 Identities=6% Similarity=0.033 Sum_probs=52.6
Q ss_pred EEEEcCccccCCCCcceEEEEeCCCCc---eee--ccCCC-CCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECC
Q psy2979 248 LYVTGGAILEDGDGIEQVQRYNPKVNQ---WQD--LAPML-IPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 248 iyv~GG~~~~~~~~~~~v~~yd~~~~~---W~~--~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
+++.|+. ++ .+..||..+.. +.. ...+. ....-..++.. ++.+++.|+. ...+..||..
T Consensus 196 ~l~s~~~---dg----~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~------dg~i~i~d~~ 262 (430)
T 2xyi_A 196 YLLSASD---DH----TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD------DQKLMIWDTR 262 (430)
T ss_dssp EEEEECT---TS----CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET------TSEEEEEETT
T ss_pred eEEEEeC---CC----eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC------CCeEEEEECC
Confidence 7777776 44 68889887621 211 11111 11112222222 5677777765 5689999988
Q ss_pred CCe-EEEccCCcCccCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 320 ENT-WEYKSPMKEKRYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 320 ~~~-W~~~~~~~~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
+.. ...+..+........++.+ ++ .+++.|+. + ..|.+||..+
T Consensus 263 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~-d-----g~v~vwd~~~ 309 (430)
T 2xyi_A 263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA-D-----KTVALWDLRN 309 (430)
T ss_dssp CSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEET-T-----SEEEEEETTC
T ss_pred CCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeC-C-----CeEEEEeCCC
Confidence 652 0001011111112223333 23 47888876 2 4688888876
No 311
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=89.69 E-value=9.9 Score=33.27 Aligned_cols=195 Identities=14% Similarity=0.131 Sum_probs=104.0
Q ss_pred cCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCc---eEEccCCCCcccccE
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNE---WSYIEPMKLAVTSPA 240 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~l~~~~~~~~ 240 (400)
.+.+...|+....-......+......++... ++.||+.-- ....+.++++.... +.....+..+ .+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~-----~~~~I~r~~~~g~~~~~~~~~~~l~~p---~g 83 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV-----SEEAIKRTEFNKTESVQNVVVSGLLSP---DG 83 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEET-----TTTEEEEEETTSSSCCCEEEEECCSCC---CE
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEEC-----CCCcEEEEEccCCCceEEEEcCCCCCc---cE
Confidence 45677778776531100001111222233332 578998743 23568899887652 2222222221 23
Q ss_pred EEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeec--cCCCCCceeeeEEEE--CCeEEEEc-CcCCCCCCCCeE
Q psy2979 241 VVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL--APMLIPRSGAAICAL--DSCIYVLG-GWHASTENTNRV 313 (400)
Q Consensus 241 ~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~~~r~~~~~~~~--~~~iyv~G-G~~~~~~~~~~v 313 (400)
+++ .++.||+.-.. ...++++++....-+.+ ..+..|+ ++++- ++.||+.. |. ...+
T Consensus 84 lavd~~~g~ly~~d~~-------~~~I~~~~~dG~~~~~l~~~~~~~P~---giavdp~~g~ly~td~~~------~~~I 147 (318)
T 3sov_A 84 LACDWLGEKLYWTDSE-------TNRIEVSNLDGSLRKVLFWQELDQPR---AIALDPSSGFMYWTDWGE------VPKI 147 (318)
T ss_dssp EEEETTTTEEEEEETT-------TTEEEEEETTSCSCEEEECSSCSSEE---EEEEEGGGTEEEEEECSS------SCEE
T ss_pred EEEEcCCCeEEEEECC-------CCEEEEEECCCCcEEEEEeCCCCCcc---EEEEeCCCCEEEEEecCC------CCEE
Confidence 444 48899998554 35789999876543333 2333332 33333 68999886 32 4689
Q ss_pred EEEECCCCeEEEccCCcCccCcc-eEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec--CCCCCCCceeeEE
Q psy2979 314 ECYHIAENTWEYKSPMKEKRYRP-GIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS--HLPSARSWLGCVP 388 (400)
Q Consensus 314 ~~yd~~~~~W~~~~~~~~~~~~~-~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~ 388 (400)
+++++....-+.+..- ....+ +++.- +++||+.-.. ...|+++|+....-+.+. .+..| .++++
T Consensus 148 ~r~~~dG~~~~~~~~~--~l~~Pnglavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~~~~~~~P---~glav 216 (318)
T 3sov_A 148 ERAGMDGSSRFIIINS--EIYWPNGLTLDYEEQKLYWADAK------LNFIHKSNLDGTNRQAVVKGSLPHP---FALTL 216 (318)
T ss_dssp EEEETTSCSCEEEECS--SCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECSCCSCE---EEEEE
T ss_pred EEEEcCCCCeEEEEEC--CCCCccEEEEeccCCEEEEEECC------CCEEEEEcCCCCceEEEecCCCCCc---eEEEE
Confidence 9999875432222111 11222 33333 6899998543 468999998765444443 23222 56666
Q ss_pred Ecccccc
Q psy2979 389 LQIHKSQ 395 (400)
Q Consensus 389 ~~~~~~~ 395 (400)
.++..|+
T Consensus 217 ~~~~lyw 223 (318)
T 3sov_A 217 FEDILYW 223 (318)
T ss_dssp ETTEEEE
T ss_pred eCCEEEE
Confidence 5554444
No 312
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=89.37 E-value=10 Score=36.41 Aligned_cols=253 Identities=13% Similarity=0.041 Sum_probs=134.6
Q ss_pred cceEEEEEcCCCceEEccCCcccceeeeEEEE---CCeEEEEE------------------eecCEEEEEECCCCC--eE
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS---GRNTIYCL------------------DIVDIVYVAASMHKI--LH 180 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~---~~~~iyv~------------------~~~~~~~~yd~~~~~--w~ 180 (400)
...+.+.|+.+.+-..+-.+|.....|+++.. ++..+|+. ...+.+-..|..+.+ |+
T Consensus 111 ~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~q 190 (595)
T 1fwx_A 111 NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQ 190 (595)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEE
Confidence 45788899999886665567766666777753 34436665 122356677877654 33
Q ss_pred EccCCCCcceeeeEEEE-CCEEEEEcccC-------------------------------C-CCCCCeEEEEeCCCCceE
Q psy2979 181 SLGSLKFDFDVSGIAML-DGFVYAVGGWD-------------------------------G-SCRLDSVERYDPTKNEWS 227 (400)
Q Consensus 181 ~~~~~~~~r~~~~~~~~-~~~iyv~GG~~-------------------------------~-~~~~~~v~~yd~~~~~W~ 227 (400)
-.-. ..| ....+.- ++.+|+..-.+ + ....+.+.+.|..+.+..
T Consensus 191 I~Vg-g~p--d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~ 267 (595)
T 1fwx_A 191 VLVS-GNL--DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASS 267 (595)
T ss_dssp EEES-SCC--CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCC
T ss_pred EEeC-CCc--cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCc
Confidence 2110 011 0111111 22333332111 0 111345788888874332
Q ss_pred E-ccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCc-e---------eeccCCCC-CceeeeEEEE
Q psy2979 228 Y-IEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQ-W---------QDLAPMLI-PRSGAAICAL 293 (400)
Q Consensus 228 ~-~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~-W---------~~~~~~~~-~r~~~~~~~~ 293 (400)
. +..+|.+..-|++..- +..+|+.+.. .+.+..||..+.+ + ..+...+. .+-.|.+..-
T Consensus 268 ~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~-------s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~ 340 (595)
T 1fwx_A 268 LFTRYIPIANNPHGCNMAPDKKHLCVAGKL-------SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG 340 (595)
T ss_dssp SSEEEEEEESSCCCEEECTTSSEEEEECTT-------SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECT
T ss_pred eeEEEEecCCCceEEEEcCCCCEEEEeCCC-------CCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECC
Confidence 2 2334445455655553 4457777766 5689999987552 1 01122222 2334555555
Q ss_pred CCeEEEEcCcCCCCCCCCeEEEEECCC--------CeEEEccCCcCccC-cceEE-------EECCEEEEEcCccCCCCC
Q psy2979 294 DSCIYVLGGWHASTENTNRVECYHIAE--------NTWEYKSPMKEKRY-RPGIA-------VIDGKIYVLGGEEGWDGY 357 (400)
Q Consensus 294 ~~~iyv~GG~~~~~~~~~~v~~yd~~~--------~~W~~~~~~~~~~~-~~~~~-------~~~~~lyv~GG~~~~~~~ 357 (400)
+|.+|+.-.. .+.+..+|..+ +.+..+..++..-. +|... .-+..+|+.-+. +....
T Consensus 341 dG~aY~t~~l------dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~-skdr~ 413 (595)
T 1fwx_A 341 RGNAYTSLFL------DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF-SKDRF 413 (595)
T ss_dssp TSEEEEEETT------TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC-CTTSS
T ss_pred CCeEEEEEec------CCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC-Ccccc
Confidence 6788888765 56788888765 22555554443221 22222 225567777665 32221
Q ss_pred -------CCeEEEEECCCCcEEEecCCCCCCCceeeEEEcccc
Q psy2979 358 -------HDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHK 393 (400)
Q Consensus 358 -------~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~ 393 (400)
-..-..||+++++-+.+...|..-.=|-++++...+
T Consensus 414 ~~~gp~~~~~~ql~dis~~~m~lv~d~p~~~ePh~~~i~~~~~ 456 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPSI 456 (595)
T ss_dssp CCCCSSCCEEEEEEECSSSSCEEEEEEEESSCCCCEEEECTTT
T ss_pred ccCCCCCCCcceEEEcCCCcEEEEEEEcCCCCCCceEEccHHH
Confidence 123378999999988887666544445666665443
No 313
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=89.33 E-value=19 Score=36.07 Aligned_cols=229 Identities=10% Similarity=0.094 Sum_probs=121.2
Q ss_pred CceEEccCCcccceeeeEEEE---CCeEEEEEeecCEEEEEECCCCCeEEccCCCC-----cceeeeEEEE---CCEEEE
Q psy2979 135 KVWKTLSCLPFAISKHGLVVS---GRNTIYCLDIVDIVYVAASMHKILHSLGSLKF-----DFDVSGIAML---DGFVYA 203 (400)
Q Consensus 135 ~~w~~~~~~~~~~~~~~~~~~---~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~-----~r~~~~~~~~---~~~iyv 203 (400)
.+|+.+...... .-.++++. .+. +|+......+++-+-...+|+.+...+. .+...+++.. .+.+|+
T Consensus 4 ~~W~~~~~~~~g-~i~~i~~~p~~~~~-~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~ 81 (789)
T 1sqj_A 4 YEFKNVAIGGGG-YITGIVAHPKTKDL-LYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYL 81 (789)
T ss_dssp CEEEECCCCBCS-CEEEEEECSSSTTC-EEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEE
T ss_pred ccceEccCCCCC-cEEEEEECCCCCCE-EEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEE
Confidence 468887653322 22344443 244 7776555668887777788999765332 1223334433 246888
Q ss_pred EcccCCCCCCCeEEEEeCCCCceEEccC-CCC-----cc-cccEEEEe---CCEEEEEcCccccCCCCcceEEEEeCCCC
Q psy2979 204 VGGWDGSCRLDSVERYDPTKNEWSYIEP-MKL-----AV-TSPAVVAH---EGMLYVTGGAILEDGDGIEQVQRYNPKVN 273 (400)
Q Consensus 204 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~-l~~-----~~-~~~~~~~~---~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 273 (400)
..|.........+++=+-.-.+|+.+.. ++. .+ ..+.+++. .+.+|+ |.. ...+++=+-...
T Consensus 82 ~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~-g~~-------~~gl~~S~DgG~ 153 (789)
T 1sqj_A 82 AQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWM-GTR-------TEGIWKSSDRAK 153 (789)
T ss_dssp EECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEE-ECS-------SSCEEEESSTTS
T ss_pred EeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEE-Eec-------cCCEEEECCCCc
Confidence 7664221111345544445668998853 111 12 12334443 356666 332 124666555568
Q ss_pred ceeeccCCCC---CceeeeEEEE----CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCcc-------------
Q psy2979 274 QWQDLAPMLI---PRSGAAICAL----DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR------------- 333 (400)
Q Consensus 274 ~W~~~~~~~~---~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~------------- 333 (400)
+|+.+..++. .-.....+.+ .+.||+..... ..+++=.-.-.+|+.+..+|...
T Consensus 154 TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~------~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~ 227 (789)
T 1sqj_A 154 TWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAP------QGMYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKP 227 (789)
T ss_dssp SCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESST------TCEEEESSTTSSCEECTTCCCSCCHHHHHTSTTCCC
T ss_pred ccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCC------CeEEEEcCCCcCcccCCCCcCccccccccccCcccc
Confidence 8999876441 1122223332 24677765321 23444333355799987555322
Q ss_pred ---CcceEEEE--CCEEEEEcCccCC--CCCCCeEEEEECCCCcEEEecCCCC
Q psy2979 334 ---YRPGIAVI--DGKIYVLGGEEGW--DGYHDSIECYDVDNDSWEIMSHLPS 379 (400)
Q Consensus 334 ---~~~~~~~~--~~~lyv~GG~~~~--~~~~~~v~~yd~~~~~W~~~~~~~~ 379 (400)
..+.+++. .+.||+..+.... ......+++.+-...+|+.+...|.
T Consensus 228 ~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g~l~~S~DgG~tW~~~~~~~~ 280 (789)
T 1sqj_A 228 ASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGEVWRQNRTSGAWDDITPRVG 280 (789)
T ss_dssp SSSSCEEEEEEECSSEEEEEEESSCSSSCCCCCCEEEEETTTCCEEECCCCTT
T ss_pred cccccceeEEcCCCCeEEEEEecCCCCCCCCCceEEEEeCCCCceEECcCCCC
Confidence 00333222 7889998422000 0124578899888899999976543
No 314
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=88.73 E-value=12 Score=32.92 Aligned_cols=183 Identities=17% Similarity=0.134 Sum_probs=92.6
Q ss_pred eeeEEEEC-CeEEEEEee------cCEEEEEECCCCCeEEccCCC----Cc-ceeeeEEEE--CCEEEEEcccCCCCCCC
Q psy2979 149 KHGLVVSG-RNTIYCLDI------VDIVYVAASMHKILHSLGSLK----FD-FDVSGIAML--DGFVYAVGGWDGSCRLD 214 (400)
Q Consensus 149 ~~~~~~~~-~~~iyv~~~------~~~~~~yd~~~~~w~~~~~~~----~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~ 214 (400)
-+++++-. +. ||++.. ...+..||+.+++....-.++ .+ ..-..+++- ++.+|+..-.. ....
T Consensus 69 p~gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~--~~~~ 145 (343)
T 2qe8_A 69 VLGIKSDGNGI-VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP--DDKA 145 (343)
T ss_dssp EEEEEECSSSE-EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS--GGGC
T ss_pred eeEEEEcCCCc-EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc--CCCC
Confidence 35566553 56 999854 368999999988743221221 11 111334444 46899873210 0235
Q ss_pred eEEEEeCCCCc-eEEccC---C-CCc-------c----------------cccEEEEe-CC-EEEEEcCccccCCCCcce
Q psy2979 215 SVERYDPTKNE-WSYIEP---M-KLA-------V----------------TSPAVVAH-EG-MLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 215 ~v~~yd~~~~~-W~~~~~---l-~~~-------~----------------~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~ 264 (400)
.+.+||+.+++ |..+.. + +.+ . .-.+++.- ++ .+|+.-.. ...
T Consensus 146 ~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~-------~~~ 218 (343)
T 2qe8_A 146 ALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH-------STS 218 (343)
T ss_dssp EEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS-------CSE
T ss_pred eEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC-------CCe
Confidence 68899998664 554422 1 100 0 00111111 22 45554322 235
Q ss_pred EEEEeCCC--C-c------e---eeccCCCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcC
Q psy2979 265 VQRYNPKV--N-Q------W---QDLAPMLIPRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKE 331 (400)
Q Consensus 265 v~~yd~~~--~-~------W---~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 331 (400)
+++++... + . + ......+. --+++. -++.||+..-. .+.|.+||++++++..+...|.
T Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~---pdgia~d~~G~l~va~~~------~~~V~~~d~~~G~~~~~~~~~~ 289 (343)
T 2qe8_A 219 MYRIKSADLSNLQLTDAELGSKIERYSEKPI---CDGISIDKDHNIYVGDLA------HSAIGVITSADRAYKLLVTDEK 289 (343)
T ss_dssp EEEEEHHHHTCTTCCHHHHHTTCEEEEECCS---CSCEEECTTCCEEEEEGG------GTEEEEEETTTTEEEEEEECGG
T ss_pred EEEEEHHHhcCCCCChhhhhcceEecccCCC---CceEEECCCCCEEEEccC------CCeEEEEECCCCCEEEEEECCc
Confidence 67776421 0 0 0 01011111 112332 26788888644 5689999996677766654441
Q ss_pred ccCcceEEEE--CCEEEEEcCc
Q psy2979 332 KRYRPGIAVI--DGKIYVLGGE 351 (400)
Q Consensus 332 ~~~~~~~~~~--~~~lyv~GG~ 351 (400)
...+..+++ ++++|+....
T Consensus 290 -~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 290 -LSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp -GSCEEEEEECTTSCEEEEECC
T ss_pred -eecCCeeEECCCCcEEEEeCc
Confidence 233444455 6889998653
No 315
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=87.80 E-value=10 Score=31.13 Aligned_cols=146 Identities=14% Similarity=0.094 Sum_probs=78.8
Q ss_pred eeEEEECCeEEEEEeecCEEEEEECCCCC-eE--Ec----cCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeC
Q psy2979 150 HGLVVSGRNTIYCLDIVDIVYVAASMHKI-LH--SL----GSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDP 221 (400)
Q Consensus 150 ~~~~~~~~~~iyv~~~~~~~~~yd~~~~~-w~--~~----~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~ 221 (400)
-+++...+. +|++.. +.+|.++..... .. .+ +.+|. .-..+... .++++|++-| +..++||.
T Consensus 34 DAi~~~~g~-~~fFkg-~~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~IDAA~~~~~~~k~yfFkG-------~~yW~y~~ 103 (218)
T 1gen_A 34 DGIAQIRGE-IFFFKD-RFIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG-------NEYWIYSA 103 (218)
T ss_dssp SEEEEETTE-EEEEET-TEEEEESSTTSCCEEEEEGGGTCTTSCS-CCSEEEEETTTTEEEEEET-------TEEEEEET
T ss_pred eEEEeCCCc-EEEEEC-CEEEEEeCCCCccCCCEEHHHhcCCCCC-CccEEEEECCCCEEEEEeC-------CEEEEEcC
Confidence 345556777 888733 566776654321 11 12 12232 12222221 2689999977 66889985
Q ss_pred CCCc---eEEcc--CCCCcccc-cEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeec-----c-C-CCCCce
Q psy2979 222 TKNE---WSYIE--PMKLAVTS-PAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL-----A-P-MLIPRS 286 (400)
Q Consensus 222 ~~~~---W~~~~--~l~~~~~~-~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~-----~-~-~~~~r~ 286 (400)
.+-. =..+. .+|..... -++.. .++++|++-|. ..|+||..+++-... . . +..+..
T Consensus 104 ~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG~---------~ywr~d~~~~~v~~gyPr~i~~~w~g~p~~ 174 (218)
T 1gen_A 104 STLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD---------KFWRYNEVKKKMDPGFPKLIADAWNAIPDN 174 (218)
T ss_dssp TEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT---------EEEEEETTTTEECSSCCEEHHHHSSSCCSS
T ss_pred ccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEECC---------EEEEEECccccccCCCCcchhhccCCCCCC
Confidence 3100 01111 12221111 23333 37899999886 799999877643221 1 0 112223
Q ss_pred eeeEEEEC--CeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 287 GAAICALD--SCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 287 ~~~~~~~~--~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
.-++...+ +.+|.+-|. ..++||..+..
T Consensus 175 idaAf~~~~~g~~YfFkg~--------~y~~~~~~~~~ 204 (218)
T 1gen_A 175 LDAVVDLQGGGHSYFFKGA--------YYLKLENQSLK 204 (218)
T ss_dssp CSEEEECTTTCEEEEEETT--------EEEEEETTEEE
T ss_pred CCEEEEEcCCCcEEEEECC--------EEEEEECCcee
Confidence 34455554 899999864 78999986554
No 316
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=87.74 E-value=14 Score=32.56 Aligned_cols=205 Identities=9% Similarity=0.063 Sum_probs=103.0
Q ss_pred ceEEEEEcCCCceEEccCCcc-------cceeeeEEEE----CCeEEEEE-e-------------ecCEEEEEECC---C
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPF-------AISKHGLVVS----GRNTIYCL-D-------------IVDIVYVAASM---H 176 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~-------~~~~~~~~~~----~~~~iyv~-~-------------~~~~~~~yd~~---~ 176 (400)
..+..+|+..+.-..+ .+|. .....++.+. ++. |+++ . ....+..||+. +
T Consensus 35 g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t 112 (334)
T 2p9w_A 35 GRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSEN 112 (334)
T ss_dssp TEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTT
T ss_pred CEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCC
Confidence 5788888886654444 2221 1223455552 445 7775 2 14679999988 4
Q ss_pred CC--eEE-ccCCCCc-------cee-e-eEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCc---eEEccCCCCccccc-
Q psy2979 177 KI--LHS-LGSLKFD-------FDV-S-GIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNE---WSYIEPMKLAVTSP- 239 (400)
Q Consensus 177 ~~--w~~-~~~~~~~-------r~~-~-~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~l~~~~~~~- 239 (400)
++ |.. ++..... +.. . -+++ -+|.+||.+.... ..++++++.... |-.-.+....+.+.
T Consensus 113 g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~----~~I~rV~pdG~~~~~~~~~~~~~~~~~G~n 188 (334)
T 2p9w_A 113 SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM----PAIARVSADGKTVSTFAWESGNGGQRPGYS 188 (334)
T ss_dssp CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS----CEEEEECTTSCCEEEEEECCCCSSSCCSCS
T ss_pred CCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC----CeEEEEeCCCCEEeeeeecCCCcccccCcc
Confidence 43 432 2111111 211 1 1222 2679999765331 469999998653 53323223334333
Q ss_pred EEEEe-CC-EEEEEcCccccCCCCcceEEEEeCCCCceeeccC--------CCCCceeeeEEEECCeEEEEcCcCCCCCC
Q psy2979 240 AVVAH-EG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP--------MLIPRSGAAICALDSCIYVLGGWHASTEN 309 (400)
Q Consensus 240 ~~~~~-~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~--------~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 309 (400)
+.+.. ++ .+++..+. ..+++||..+.....++. +..+ ...-..-.+|++.++...
T Consensus 189 GIv~~pdg~~Liv~~~~--------g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~-dgilp~~~~G~vllV~~~------ 253 (334)
T 2p9w_A 189 GITFDPHSNKLIAFGGP--------RALTAFDVSKPYAWPEPVKINGDFGTLSGT-EKIVTVPVGNESVLVGAR------ 253 (334)
T ss_dssp EEEEETTTTEEEEESSS--------SSEEEEECSSSSCCCEECEESSCCCCCTTE-EEEEEEEETTEEEEEEEE------
T ss_pred eEEEeCCCCEEEEEcCC--------CeEEEEcCCCCcceeecccccCCcccccCc-ccccccccCCEEEEEEcC------
Confidence 45555 34 55555432 368999987433211211 1111 111223368888555532
Q ss_pred CCeEEEEECCCCeEEEcc---CCcC---ccCcceEEE----ECCEEEEEcCc
Q psy2979 310 TNRVECYHIAENTWEYKS---PMKE---KRYRPGIAV----IDGKIYVLGGE 351 (400)
Q Consensus 310 ~~~v~~yd~~~~~W~~~~---~~~~---~~~~~~~~~----~~~~lyv~GG~ 351 (400)
.+.+..+-...+ |.... ..|. .......++ .+++||++.+.
T Consensus 254 ~~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~ 304 (334)
T 2p9w_A 254 APYAISFRSWDN-WKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAVSAF 304 (334)
T ss_dssp TTEEEEEECSST-TSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEEECC
T ss_pred CCCEEEEECCCC-cceeEEeeeecCccccCceeEEEEeccccCCeEEEEeee
Confidence 233444444444 86643 2221 222233334 47899999765
No 317
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=87.64 E-value=16 Score=33.07 Aligned_cols=106 Identities=11% Similarity=0.126 Sum_probs=58.6
Q ss_pred CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
++.+++.|+. ++ .+..||..+.+-...-..+........+.. ++..++.|+. ...+..||..+++
T Consensus 181 ~~~~l~~~~~---d~----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~ 247 (437)
T 3gre_A 181 EKSLLVALTN---LS----RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT------RGIIDIWDIRFNV 247 (437)
T ss_dssp SCEEEEEEET---TS----EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET------TSCEEEEETTTTE
T ss_pred CCCEEEEEeC---CC----eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC------CCeEEEEEcCCcc
Confidence 4777788877 43 799999977653222111101111222223 6777777776 4579999998876
Q ss_pred EEEccCCcCccCcceEEEE------CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 323 WEYKSPMKEKRYRPGIAVI------DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 323 W~~~~~~~~~~~~~~~~~~------~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
....-..+... ....+.. ++++++.|+. + ..|.+||..+++
T Consensus 248 ~~~~~~~~~~~-~v~~~~~~~~~s~~~~~l~s~~~-d-----g~i~iwd~~~~~ 294 (437)
T 3gre_A 248 LIRSWSFGDHA-PITHVEVCQFYGKNSVIVVGGSS-K-----TFLTIWNFVKGH 294 (437)
T ss_dssp EEEEEBCTTCE-EEEEEEECTTTCTTEEEEEEEST-T-----EEEEEEETTTTE
T ss_pred EEEEEecCCCC-ceEEEEeccccCCCccEEEEEcC-C-----CcEEEEEcCCCc
Confidence 54321111111 1111111 3556666765 2 468899998765
No 318
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=87.60 E-value=5.3 Score=32.92 Aligned_cols=97 Identities=13% Similarity=0.232 Sum_probs=57.3
Q ss_pred eCCEEEEEcCccccCCCCcceEEEEeCCCCcee--ecc----CCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEE
Q psy2979 244 HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ--DLA----PMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~--~~~----~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 317 (400)
.+|++|++-|. ..|+++.....+. .+. .+|. .-=++...++++|++-|. .+|+|+
T Consensus 27 ~~g~~yfFkg~---------~~Wr~~~~~~~~~p~~Is~~wpgLP~--~IDAA~~~~~~~yfFkG~--------~yw~~~ 87 (219)
T 1hxn_A 27 NHGATYVFSGS---------HYWRLDTNRDGWHSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQDT--------KVYVFL 87 (219)
T ss_dssp TTSCEEEEETT---------EEEESSSSSCTTCCEEGGGTCTTSCS--SCSEEEEETTEEEEEETT--------EEEEEE
T ss_pred CCCcEEEEeCC---------EEEEEcCCCCCCCceEhhhhccCCCC--CccEEEEECCcEEEecCC--------EEEEEe
Confidence 58999999886 6888876543321 111 2332 222344458999999763 799998
Q ss_pred CCCCeEEEcc----------CCcCc--cCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 318 IAENTWEYKS----------PMKEK--RYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 318 ~~~~~W~~~~----------~~~~~--~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
..++. +..+ .+|.. ....-++.. ++++|++-|. ..|+||..+
T Consensus 88 ~~~~~-~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG~--------~ywr~d~~~ 144 (219)
T 1hxn_A 88 TKGGY-TLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGR--------RLWWLDLKS 144 (219)
T ss_dssp CSSSC-EECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETT--------EEEEEEGGG
T ss_pred CCCCc-eecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeCC--------EEEEEeCCC
Confidence 75421 1121 12222 111223332 5899999886 679999654
No 319
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=86.98 E-value=21 Score=33.69 Aligned_cols=175 Identities=13% Similarity=0.086 Sum_probs=86.5
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV 242 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~ 242 (400)
.....+..+|.....-..+..... .-.+++.. +++.++.|+.+ ..+..||.....-..+.....+.. ..+.
T Consensus 322 ~~d~~i~~w~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~d-----g~v~~~~~~~~~~~~~~~~~~~v~-~~~~ 393 (577)
T 2ymu_A 322 SDDKTVKLWNRNGQHLQTLTGHSS--SVWGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLTGHSSSVR-GVAF 393 (577)
T ss_dssp ETTSCEEEEETTSCEEEEECCCSS--CEEEEEECTTSSEEEEEETT-----SEEEEEETTCCEEEEEECCSSCEE-EEEE
T ss_pred eCCCeEEEEeCCCCeeEEEeCCCC--CEEEEEECCCCCEEEEEeCC-----CEEEEEcCCCCEEEEecCCCCCeE-EEEE
Confidence 344556677766544333322111 11122222 55666666654 357778865544333332221111 1111
Q ss_pred EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 243 AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 243 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
.-+++.++.|+. ++ .+..||.....-..+.....+ -.+++. -+++.++.++. ...+..||....
T Consensus 394 s~dg~~l~~~~~---d~----~v~~~~~~~~~~~~~~~~~~~--v~~~~~s~d~~~l~~~~~------d~~v~~w~~~~~ 458 (577)
T 2ymu_A 394 SPDGQTIASASD---DK----TVKLWNRNGQLLQTLTGHSSS--VWGVAFSPDDQTIASASD------DKTVKLWNRNGQ 458 (577)
T ss_dssp CTTSSCEEEEET---TS----EEEEECTTCCEEEEEECCSSC--EEEEEECTTSSEEEEEET------TSEEEEEETTSC
T ss_pred CCCCCEEEEEeC---CC----EEEEEeCCCCEEEEecCCCCC--eEEEEECCCCCEEEEEcC------CCEEEEEECCCC
Confidence 236677777776 43 688888654433333221111 112222 26677777765 457888887665
Q ss_pred eEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 322 TWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 322 ~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.-..+.... .....+.+ ++++++.|+. + ..|.+||.....
T Consensus 459 ~~~~~~~~~---~~v~~~~~spd~~~las~~~-d-----~~i~iw~~~~~~ 500 (577)
T 2ymu_A 459 LLQTLTGHS---SSVRGVAFSPDGQTIASASD-D-----KTVKLWNRNGQL 500 (577)
T ss_dssp EEEEEECCS---SCEEEEEECTTSCEEEEEET-T-----SEEEEEETTSCE
T ss_pred EEEEEcCCC---CCEEEEEEcCCCCEEEEEeC-C-----CEEEEEcCCCCE
Confidence 544443222 11122333 6777777765 2 367788865443
No 320
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=86.78 E-value=26 Score=34.72 Aligned_cols=232 Identities=14% Similarity=0.129 Sum_probs=124.6
Q ss_pred CCceEEccCCcccceeeeEEEE--C-CeEEEEEeecCEEEEEECCCCCeEEccCCCCcc----eeeeEEEE----CCEEE
Q psy2979 134 TKVWKTLSCLPFAISKHGLVVS--G-RNTIYCLDIVDIVYVAASMHKILHSLGSLKFDF----DVSGIAML----DGFVY 202 (400)
Q Consensus 134 ~~~w~~~~~~~~~~~~~~~~~~--~-~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r----~~~~~~~~----~~~iy 202 (400)
..+|+.+..-...-.-.++++. + +. +|+......+++.+-...+|+.+.+.+... .......+ .+.+|
T Consensus 10 ~~~w~~~~~~~~~g~i~~i~~~p~~~~~-~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~ 88 (737)
T 2cn3_A 10 PYKWDNVVIGGGGGFMPGIVFNETEKDL-IYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVY 88 (737)
T ss_dssp CEEEEEECCCSBCSCCCEEEECSSSTTC-EEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEE
T ss_pred CCeeEEcccCCCcceeeEEEECCCCCCE-EEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEE
Confidence 3468877643322122345543 2 45 787655567999988889999987633211 12222333 35788
Q ss_pred EEcccCC--CCC-CCeEEEEeCCCCceEEccC-CCC-----cc-cccEEEEe---CCEEEEEcCccccCCCCcceEEEEe
Q psy2979 203 AVGGWDG--SCR-LDSVERYDPTKNEWSYIEP-MKL-----AV-TSPAVVAH---EGMLYVTGGAILEDGDGIEQVQRYN 269 (400)
Q Consensus 203 v~GG~~~--~~~-~~~v~~yd~~~~~W~~~~~-l~~-----~~-~~~~~~~~---~~~iyv~GG~~~~~~~~~~~v~~yd 269 (400)
+..|... ... ...+++=.-.-.+|+.+.. .+. .+ ..+.++.. .+.+|+.... + ..+++=.
T Consensus 89 v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~----g---~gl~~S~ 161 (737)
T 2cn3_A 89 IVAGMYTNDWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC----G---NGLWRST 161 (737)
T ss_dssp EEECSCSSSSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST----T---CCEEEES
T ss_pred EEecccccccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc----C---CcEEEeC
Confidence 8765321 111 1335544444568998752 111 11 12344442 2567764311 1 1456554
Q ss_pred CCCCceeeccCCCCCc--------------eeeeEEEEC----------CeEEEEcCcCCCCCCCCeEEEEECCCCeEEE
Q psy2979 270 PKVNQWQDLAPMLIPR--------------SGAAICALD----------SCIYVLGGWHASTENTNRVECYHIAENTWEY 325 (400)
Q Consensus 270 ~~~~~W~~~~~~~~~r--------------~~~~~~~~~----------~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 325 (400)
-...+|+++..+|... .+...+.++ +.||+.-... ...+++=.-.-.+|+.
T Consensus 162 DgG~tW~~~~~~~~~~~~~~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~-----~~~v~~S~DgG~tW~~ 236 (737)
T 2cn3_A 162 DYGVTWSKVESFPNPGTYIYDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADK-----NESIYRSTDGGVTWKA 236 (737)
T ss_dssp STTSSCEECTTCCCCCCCBSCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCS-----SCCEEEESSTTSCCEE
T ss_pred CCCcceecccCCCCCcccccCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCC-----CccEEEEcCCCCceEE
Confidence 4567899987665321 112223331 2677643211 1124433333557999
Q ss_pred ccCCcCccCcceEEEE-CCEEEEEcCccCC----CCCCCeEEEEECCCCcEEEecCCCC
Q psy2979 326 KSPMKEKRYRPGIAVI-DGKIYVLGGEEGW----DGYHDSIECYDVDNDSWEIMSHLPS 379 (400)
Q Consensus 326 ~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~----~~~~~~v~~yd~~~~~W~~~~~~~~ 379 (400)
+..+|.....+.++.- ++.+|+..+. .. ......+++++-...+|+.+...|.
T Consensus 237 ~~~~p~~~~~~~~~~~~~~~l~~~~~d-~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~ 294 (737)
T 2cn3_A 237 VPGQPKGLLPHHGVLASNGMLYITYGD-TCGPYDGNGKGQVWKFNTRTGEWIDITPIPY 294 (737)
T ss_dssp CTTCCCSSEEEEEEECTTSEEEEEEES-SCCSSCCSCCEEEEEEETTTCCEEECCSSCT
T ss_pred CCCCCCcccceEEEECCCCeEEEEecC-CCCccccccCceEEEEeCCCCCEEEccCCCC
Confidence 9877754433333322 7889987543 11 1134579999999999999977654
No 321
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=86.59 E-value=17 Score=32.27 Aligned_cols=178 Identities=11% Similarity=-0.030 Sum_probs=91.4
Q ss_pred cCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc--cccEEE
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV--TSPAVV 242 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~--~~~~~~ 242 (400)
...+..+|+.+.+...... ....-.+++.- ++++++.|+. ..+.+++..+++........... ......
T Consensus 156 d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~f 227 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYITG------SSLEVISTVTGSCIARKTDFDKNWSLSKINF 227 (365)
T ss_dssp SCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEECS------SCEEEEETTTCCEEEEECCCCTTEEEEEEEE
T ss_pred CCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEeccc------eeEEEEEeccCcceeeeecCCCCCCEEEEEE
Confidence 3567888888765433221 11111122222 5566665542 34677777777654332222111 111222
Q ss_pred EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 243 AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICA--LDSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 243 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
.-++..++.++. ++.....++.+|.....+.... .+........++. -++++++.|+. ..+|..||.
T Consensus 228 spdg~~l~~~s~---d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~------D~~V~iwd~ 298 (365)
T 4h5i_A 228 IADDTVLIAASL---KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN------DNSIALVKL 298 (365)
T ss_dssp EETTEEEEEEEE---SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET------TSCEEEEET
T ss_pred cCCCCEEEEEec---CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC------CCEEEEEEC
Confidence 347888887766 4432235666776655544322 1111111112222 27888888876 457999999
Q ss_pred CCCeEEEccCCcCccCc-ceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 319 AENTWEYKSPMKEKRYR-PGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 319 ~~~~W~~~~~~~~~~~~-~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
.+.+-.. ....++.. -..+.+ ++++++.|+. + ..|-++|+..
T Consensus 299 ~~~~~~~--~~~~gH~~~V~~v~fSpdg~~laS~S~-D-----~tvrvw~ip~ 343 (365)
T 4h5i_A 299 KDLSMSK--IFKQAHSFAITEVTISPDSTYVASVSA-A-----NTIHIIKLPL 343 (365)
T ss_dssp TTTEEEE--EETTSSSSCEEEEEECTTSCEEEEEET-T-----SEEEEEECCT
T ss_pred CCCcEEE--EecCcccCCEEEEEECCCCCEEEEEeC-C-----CeEEEEEcCC
Confidence 8876332 11111111 123333 7888888876 3 4677888644
No 322
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=86.50 E-value=0.36 Score=43.64 Aligned_cols=66 Identities=8% Similarity=0.024 Sum_probs=33.1
Q ss_pred EEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECC
Q psy2979 242 VAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 242 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
++.++.+|+.+.. ..++++|..+.+ |+.-. .. .....+..++.+|+.++. ...++++|.+
T Consensus 6 ~v~~~~v~~gs~d--------g~v~a~d~~tG~~~W~~~~--~~--~~s~p~~~~g~~~v~~s~------dg~l~a~d~~ 67 (369)
T 2hz6_A 6 TLPETLLFVSTLD--------GSLHAVSKRTGSIKWTLKE--DP--VLQVPTHVEEPAFLPDPN------DGSLYTLGSK 67 (369)
T ss_dssp --CTTEEEEEETT--------SEEEEEETTTCCEEEEEEC--CC--SCCCC-----CCEEECTT------TCCEEEC---
T ss_pred eeeCCEEEEEcCC--------CEEEEEECCCCCEEEEecC--CC--ceecceEcCCCEEEEeCC------CCEEEEEECC
Confidence 4456777765432 378999987665 87643 11 112233456778887654 4578999986
Q ss_pred CC--eEEE
Q psy2979 320 EN--TWEY 325 (400)
Q Consensus 320 ~~--~W~~ 325 (400)
++ .|..
T Consensus 68 tG~~~w~~ 75 (369)
T 2hz6_A 68 NNEGLTKL 75 (369)
T ss_dssp --CCSEEC
T ss_pred CCceeeee
Confidence 55 4653
No 323
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=85.83 E-value=18 Score=33.22 Aligned_cols=142 Identities=15% Similarity=0.110 Sum_probs=75.8
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCcee-
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ- 276 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~- 276 (400)
+.||+.-.. ..+.++|+.+++...+.. +..+. ..++ .-++.||+.... .......+..+++... |.
T Consensus 153 g~Lyv~D~~------~~I~~id~~~g~v~~~~~-~~~~P-~giavd~dG~lyVad~~---~~~~~~gv~~~~~~~~-~~~ 220 (433)
T 4hw6_A 153 DDLYWVGQR------DAFRHVDFVNQYVDIKTT-NIGQC-ADVNFTLNGDMVVVDDQ---SSDTNTGIYLFTRASG-FTE 220 (433)
T ss_dssp CEEEEECBT------SCEEEEETTTTEEEEECC-CCSCE-EEEEECTTCCEEEEECC---SCTTSEEEEEECGGGT-TCC
T ss_pred CEEEEEeCC------CCEEEEECCCCEEEEeec-CCCCc-cEEEECCCCCEEEEcCC---CCcccceEEEEECCCC-eec
Confidence 789997331 679999999888877654 11111 1222 235669998542 1111234666665322 22
Q ss_pred --eccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeE-EEccCCcCccCcceEEEE-C-CEEEEEc
Q psy2979 277 --DLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTW-EYKSPMKEKRYRPGIAVI-D-GKIYVLG 349 (400)
Q Consensus 277 --~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~-~-~~lyv~G 349 (400)
.++.+..| .++++. ++.||+.... ...+++||+.++.- ..+...........++.- + +.||+.-
T Consensus 221 ~~~~~~~~~P---~giavd~~~G~lyv~d~~------~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 221 RLSLCNARGA---KTCAVHPQNGKIYYTRYH------HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp EEEEEECSSB---CCCEECTTTCCEEECBTT------CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred cccccccCCC---CEEEEeCCCCeEEEEECC------CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 22222222 233333 6789987643 46899999986654 232211111111223322 3 4599975
Q ss_pred CccCCCCCCCeEEEEECC
Q psy2979 350 GEEGWDGYHDSIECYDVD 367 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~~ 367 (400)
-. .+.|+++|+.
T Consensus 292 ~~------~~~I~~~~~d 303 (433)
T 4hw6_A 292 NG------KHCIYRVDYN 303 (433)
T ss_dssp TT------TTEEEEEEBC
T ss_pred CC------CCEEEEEeCC
Confidence 33 3578886654
No 324
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=85.80 E-value=3.7 Score=39.78 Aligned_cols=144 Identities=12% Similarity=0.152 Sum_probs=76.4
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCC-ceE--Ec----cCCCCcccccEEEE-eCCEEEEEcCccccCCCCcce
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKN-EWS--YI----EPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~--~~----~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 264 (400)
+++..++.+|++-| +.+|+++.... ... .+ +.+|... ..+... .++++|++-|. .
T Consensus 448 Ait~~rg~~yfFKg-------~~yWr~~~~~~~~~~P~~Is~~wp~LP~~I-DAA~~~~~~~k~yFFkG~---------~ 510 (631)
T 1ck7_A 448 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPEKI-DAVYEAPQEEKAVFFAGN---------E 510 (631)
T ss_dssp EEEECSSSEEEECS-------SEEEEESCTTSCCEEEEEGGGTCTTSCSSC-SBCCEETTTTEEEEEETT---------E
T ss_pred eeEecCCcEEEEcC-------CEEEEEcCCCCCCCCceeccccCCCCCccc-eEEEEECCCCEEEEEecC---------E
Confidence 45556888999977 45777765542 111 11 2344322 222222 36889999876 6
Q ss_pred EEEEeCCCCc--e-eeccC--CCCC-ceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE-----Ecc-CCc
Q psy2979 265 VQRYNPKVNQ--W-QDLAP--MLIP-RSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAENTWE-----YKS-PMK 330 (400)
Q Consensus 265 v~~yd~~~~~--W-~~~~~--~~~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-----~~~-~~~ 330 (400)
.|+|+..+.. + ..+.. +|.. ..--++.. .++++|++-|. ..|+||..+++-. .+. ..+
T Consensus 511 yWry~~~~l~~GYPk~Is~~G~P~~~~~IDAAf~~~~~gktYFFkG~--------~ywryd~~~~~vd~gYPk~i~~~w~ 582 (631)
T 1ck7_A 511 YWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD--------KFWRYNEVKKKMDPGFPKLIADAWN 582 (631)
T ss_dssp EEEEETTEECTTCCEEGGGGTCCTTCCCCCBCCCCTTTCEEEEEETT--------EEEEEETTTTEECTTCCEETTTSCS
T ss_pred EEEECCCccccCCCccchhcCCCCCCCcceeEEEecCCCeEEEEECC--------EEEEEcCCcccccCCCCcchHhhcC
Confidence 8999853110 0 11111 1211 01112222 36899999864 8999998766421 111 111
Q ss_pred -CccCcceEEEEC--CEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 331 -EKRYRPGIAVID--GKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 331 -~~~~~~~~~~~~--~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
.+...-++...+ |++|++-|. ..|+||..+.
T Consensus 583 G~p~~iDAAf~~~~~g~~YFFkG~--------~Ywr~d~~~~ 616 (631)
T 1ck7_A 583 AIPDNLDAVVDLQGGGHSYFFKGA--------YYLKLENQSL 616 (631)
T ss_dssp SCCTTCCEEECCTTSCBCEEEETT--------EEECCBTTBT
T ss_pred CCCCCCcEeEEEcCCCeEEEEECC--------EEEEEeCccc
Confidence 122222333333 899999886 5688887654
No 325
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=85.47 E-value=6.9 Score=37.53 Aligned_cols=208 Identities=10% Similarity=0.018 Sum_probs=110.2
Q ss_pred cceeeeEEEE-----CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE----CCEEEEEcccCC------
Q psy2979 146 AISKHGLVVS-----GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML----DGFVYAVGGWDG------ 209 (400)
Q Consensus 146 ~~~~~~~~~~-----~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~------ 209 (400)
....|-.... ++..+|+. ...+++...|+.+.+-..+-.+|....-++++.. .+.+|+.+....
T Consensus 85 gd~hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg 164 (595)
T 1fwx_A 85 GDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG 164 (595)
T ss_dssp CCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred CCCCccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCC
Confidence 3344544444 45547776 5566799999999876654466655555565542 467887753321
Q ss_pred ------CCCCCeEEEEeCCCCc--eEEccCCCCcccccEEEE-eCCEEEEEcCcc-------------------------
Q psy2979 210 ------SCRLDSVERYDPTKNE--WSYIEPMKLAVTSPAVVA-HEGMLYVTGGAI------------------------- 255 (400)
Q Consensus 210 ------~~~~~~v~~yd~~~~~--W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~------------------------- 255 (400)
....+.+...|..+.+ |+..-+ . ......+. -++.+|+..-.+
T Consensus 165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~Vg--g-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~ 241 (595)
T 1fwx_A 165 TNMEDVANYVNVFTAVDADKWEVAWQVLVS--G-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI 241 (595)
T ss_dssp SSTTCGGGEEEEEEEEETTTTEEEEEEEES--S-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH
T ss_pred cccccccccCceEEEEECCCCeEEEEEEeC--C-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccce
Confidence 1233567888988763 543311 1 11111221 133344433110
Q ss_pred ---ccCCCC--cceEEEEeCCCCceee-ccCCCCCceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCCCe-E---
Q psy2979 256 ---LEDGDG--IEQVQRYNPKVNQWQD-LAPMLIPRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIAENT-W--- 323 (400)
Q Consensus 256 ---~~~~~~--~~~v~~yd~~~~~W~~-~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~-W--- 323 (400)
..+|.. .+.+-..|+.+.+... +...|.+..-|++..- +| .+|+.+.. .+.+..||..+.+ +
T Consensus 242 ~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~------s~~VsVid~~~~~~~~~~ 315 (595)
T 1fwx_A 242 EKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL------SPTVTVLDVTRFDAVFYE 315 (595)
T ss_dssp HHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTT------SSBEEEEEGGGHHHHHHS
T ss_pred eEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCC------CCeEEEEECccccccccc
Confidence 011222 4457888888743333 2334445555666666 44 56666655 6789999998652 1
Q ss_pred ------EEccCCcCcc-CcceEEEECCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 324 ------EYKSPMKEKR-YRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 324 ------~~~~~~~~~~-~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
......+.+. -.|.+..-+|.+|+.-.. .++|..||..+
T Consensus 316 ~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~l------dsqV~kwdi~~ 361 (595)
T 1fwx_A 316 NADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFL------DSQVVKWNIED 361 (595)
T ss_dssp CCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETT------TTEEEEEEHHH
T ss_pred ccCcccceEEEcCCCCCcceEEECCCCeEEEEEec------CCcEEEEEhhH
Confidence 0112223221 222222225788887665 34667777655
No 326
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=85.12 E-value=15 Score=30.25 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=75.0
Q ss_pred ECCEEEEEcccCCCCCCCeEEEEeCCCCce--EEc----cCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 197 LDGFVYAVGGWDGSCRLDSVERYDPTKNEW--SYI----EPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 197 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W--~~~----~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
.++++|++=| ...++++.....+ ..+ +.||... . ++...++++|++-|. .+|+|+.
T Consensus 27 ~~g~~yfFkg-------~~~Wr~~~~~~~~~p~~Is~~wpgLP~~I-D-AA~~~~~~~yfFkG~---------~yw~~~~ 88 (219)
T 1hxn_A 27 NHGATYVFSG-------SHYWRLDTNRDGWHSWPIAHQWPQGPSTV-D-AAFSWEDKLYLIQDT---------KVYVFLT 88 (219)
T ss_dssp TTSCEEEEET-------TEEEESSSSSCTTCCEEGGGTCTTSCSSC-S-EEEEETTEEEEEETT---------EEEEEEC
T ss_pred CCCcEEEEeC-------CEEEEEcCCCCCCCceEhhhhccCCCCCc-c-EEEEECCcEEEecCC---------EEEEEeC
Confidence 4788999977 4567766543221 112 2344322 2 344458999999887 7999986
Q ss_pred CCC-cee-----ecc---CCCCC--ce-eeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCC---eEEEccCCcCcc
Q psy2979 271 KVN-QWQ-----DLA---PMLIP--RS-GAAICAL--DSCIYVLGGWHASTENTNRVECYHIAEN---TWEYKSPMKEKR 333 (400)
Q Consensus 271 ~~~-~W~-----~~~---~~~~~--r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~~ 333 (400)
.++ +-. .+. .+|.. .. --++... ++++|++-|. ..|+||..+. .|...+..|..
T Consensus 89 ~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG~--------~ywr~d~~~~P~~i~~~~~g~p~~- 159 (219)
T 1hxn_A 89 KGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGR--------RLWWLDLKSGAQATWTELPWPHEK- 159 (219)
T ss_dssp SSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETT--------EEEEEEGGGGGGCCCEEECCSCSC-
T ss_pred CCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeCC--------EEEEEeCCCCceEhhhcCCCCCCC-
Confidence 532 111 111 22222 11 2223322 6899999874 7899997542 34333222211
Q ss_pred CcceEEE------------ECCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 334 YRPGIAV------------IDGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 334 ~~~~~~~------------~~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
.-++.. .++.+|++-|. ..|+||..+
T Consensus 160 -vdAa~~~~~~~~~~~~~~~~~~~YFFkg~--------~y~r~~~~~ 197 (219)
T 1hxn_A 160 -VDGALCMEKPLGPNSCSTSGPNLYLIHGP--------NLYCYRHVD 197 (219)
T ss_dssp -CSEEEEESSCSSSCCSCSSSCEEEEEETT--------EEEEESSHH
T ss_pred -cCEEEEccccccccceeccCCeEEEEECC--------EEEEEeCCc
Confidence 122323 24679999885 568887643
No 327
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=84.61 E-value=14 Score=29.69 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=77.6
Q ss_pred eEEEECCeEEEEEeecCEEEEEECCC---CCeEEc----cCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCC
Q psy2979 151 GLVVSGRNTIYCLDIVDIVYVAASMH---KILHSL----GSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTK 223 (400)
Q Consensus 151 ~~~~~~~~~iyv~~~~~~~~~yd~~~---~~w~~~----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 223 (400)
+++...+. +|++. .+.+|.++... +-=..+ +.+|. .-..+....++++|++-| +..++|+..+
T Consensus 10 A~~~~~g~-~~fFk-g~~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg-------~~yw~~~~~~ 79 (196)
T 3c7x_A 10 TVAMLRGE-MFVFK-ERWFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG-------DKHWVFDEAS 79 (196)
T ss_dssp EEEEETTE-EEEEE-TTEEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET-------TEEEEEETTE
T ss_pred EEEEcCCE-EEEEE-CCEEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC-------CEEEEEeCCc
Confidence 44456777 88873 35567775431 100111 12332 122222124678999977 5688887542
Q ss_pred Cce---EEcc----CCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceee-----ccCC-CCCceeee
Q psy2979 224 NEW---SYIE----PMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD-----LAPM-LIPRSGAA 289 (400)
Q Consensus 224 ~~W---~~~~----~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-----~~~~-~~~r~~~~ 289 (400)
-.. ..+. .+|...-..+... .++++|.+-|. ..++||..+++-.. +... ..+..--+
T Consensus 80 ~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG~---------~yw~yd~~~~~v~~gyPk~i~~~~gip~~ida 150 (196)
T 3c7x_A 80 LEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGN---------KYYRFNEELRAVDSEYPKNIKVWEGIPESPRG 150 (196)
T ss_dssp ECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEETT---------EEEEEETTTTEECTTCSEEGGGSBTCCSSCSE
T ss_pred ccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEECC---------EEEEEeCCcccccCCCCccHHHCCCcCCCcce
Confidence 110 1222 2443222222221 26899999887 68999987754322 1111 11222233
Q ss_pred EEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 290 ICAL-DS-CIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 290 ~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
+... ++ ++|++-|. ..++||..+++
T Consensus 151 Af~~~~~~~~YfFkg~--------~y~r~d~~~~~ 177 (196)
T 3c7x_A 151 SFMGSDEVFTYFYKGN--------KYWKFNNQKLK 177 (196)
T ss_dssp EEECTTSSEEEEEETT--------EEEEEETTTTE
T ss_pred eEEecCCCEEEEEECC--------EEEEEECCcce
Confidence 4444 44 89999864 79999998765
No 328
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=84.18 E-value=32 Score=33.56 Aligned_cols=59 Identities=7% Similarity=-0.185 Sum_probs=30.6
Q ss_pred cceEEEEEcCCCceEEccCCcccce-eeeEEE-ECCeEEEEEeecCEEEEEECCCCCeEEcc
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAIS-KHGLVV-SGRNTIYCLDIVDIVYVAASMHKILHSLG 183 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~-~~~~~~-~~~~~iyv~~~~~~~~~yd~~~~~w~~~~ 183 (400)
...++.+|..+++...+........ ....+. -++. .+++.....++.+|..+++...+.
T Consensus 90 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~-~la~~~~~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 90 TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQ-QLIFIFENNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp CSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTT-CEEEEETTEEEEESSSSSCCEEEE
T ss_pred eeeEEEEECCCCceEeccCCccccccccccEECCCCC-EEEEEECCeEEEEECCCCceEEEe
Confidence 3678899998887665553321110 111111 2343 223323356777777776655443
No 329
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=83.53 E-value=38 Score=33.74 Aligned_cols=206 Identities=11% Similarity=0.111 Sum_probs=109.1
Q ss_pred EEEEeecCEEEEEECCCCCeEEccC-C-----CC---cceeeeEEEE----CCEEEEEcccCC-CCCCCeEEEEeCCCCc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGS-L-----KF---DFDVSGIAML----DGFVYAVGGWDG-SCRLDSVERYDPTKNE 225 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~-~-----~~---~r~~~~~~~~----~~~iyv~GG~~~-~~~~~~v~~yd~~~~~ 225 (400)
+|+......+++-+-...+|+++.. + +. .........+ .+.+|+..|... ......+++=+-.-.+
T Consensus 36 ~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~DgG~T 115 (763)
T 3a0f_A 36 IYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKT 115 (763)
T ss_dssp EEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESSTTSS
T ss_pred EEEEeccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccccCCCCceEEEECCCCCC
Confidence 6666545567777777788998876 3 21 1122222223 357888665311 1112345544444568
Q ss_pred eEEccC-CC-----Ccccc-cEEEEe---CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCc---eeeeEEE
Q psy2979 226 WSYIEP-MK-----LAVTS-PAVVAH---EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPR---SGAAICA 292 (400)
Q Consensus 226 W~~~~~-l~-----~~~~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r---~~~~~~~ 292 (400)
|+.+.. .+ ..+.. ..+++. .+.+|+.+.. ..+++=+-...+|+++..++... .....+.
T Consensus 116 W~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~--------~~l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~ 187 (763)
T 3a0f_A 116 FKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRT--------QGLWRSTDRAQTWSRMNQLPDSSTYGIGIISVI 187 (763)
T ss_dssp CEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSS--------SCEEEESSTTSSCEECTTSCCCSCTTTCEEEEE
T ss_pred ceeccCCcccCccccCccccceEEECCCCCCEEEEEeCC--------CcEEEECCCCcCccccccCcccCCCccceEEEE
Confidence 998852 11 11211 234443 3678875422 24665555567899998766432 1222222
Q ss_pred E----CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCc--------------------cCcceEEEE-CCEEEE
Q psy2979 293 L----DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEK--------------------RYRPGIAVI-DGKIYV 347 (400)
Q Consensus 293 ~----~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--------------------~~~~~~~~~-~~~lyv 347 (400)
+ .+.+|+..... ..+++=+=.-.+|+.+...|.. ...+.++.. ++.+|+
T Consensus 188 ~~p~~~~~~~~~~~~~------g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~ 261 (763)
T 3a0f_A 188 FDPKNVGTAYVASHAV------GGLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYI 261 (763)
T ss_dssp ECSSSTTCEEEEESST------TCEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEE
T ss_pred ECCCCCCEEEEEEeCC------CeEEEECCCCCCccccCCCccccccccccccccccccccCCCCcceeEEECCCCcEEE
Confidence 2 34677765321 0244433335579998755521 112222222 688888
Q ss_pred EcCcc-CC-CCCCCeEEEEECCCCcEEEecCCCC
Q psy2979 348 LGGEE-GW-DGYHDSIECYDVDNDSWEIMSHLPS 379 (400)
Q Consensus 348 ~GG~~-~~-~~~~~~v~~yd~~~~~W~~~~~~~~ 379 (400)
..... .. ......+++.+-...+|+.+..+|.
T Consensus 262 ~~~~~~~~~~~~~g~v~rS~D~G~tW~~~~~~~~ 295 (763)
T 3a0f_A 262 TYSDAPGPWGVLYGEVWSYDPTNGNWKHITPSRE 295 (763)
T ss_dssp EEESSCSSSCCCCEEEEEEETTTTEEEECCTTSS
T ss_pred EeccCCCCCCCcceeEEEEeCCCCceEECCCCCC
Confidence 74210 00 0123578999989999999875543
No 330
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=82.24 E-value=41 Score=33.20 Aligned_cols=234 Identities=9% Similarity=0.035 Sum_probs=117.4
Q ss_pred cceEEEEEcC---CCceEEccCCc---ccc--eeeeEEEE-CCeEEEEE--ee--c--CEEEEEECCCCCeEEccCCCCc
Q psy2979 124 LRSVEGFCVK---TKVWKTLSCLP---FAI--SKHGLVVS-GRNTIYCL--DI--V--DIVYVAASMHKILHSLGSLKFD 188 (400)
Q Consensus 124 ~~~~~~yd~~---~~~w~~~~~~~---~~~--~~~~~~~~-~~~~iyv~--~~--~--~~~~~yd~~~~~w~~~~~~~~~ 188 (400)
...++..+.. .+.|..+.+.. ... ...+.+.. ++. ..++ .. . ..++.+|..+++..... . +
T Consensus 132 ~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~--~ 207 (741)
T 1yr2_A 132 QSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGR-LLAYSVQDGGSDWRTVKFVGVADGKPLADE-L--K 207 (741)
T ss_dssp SCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSS-EEEEEEEETTCSEEEEEEEETTTCCEEEEE-E--E
T ss_pred EEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCCcc-C--C
Confidence 4566777765 56777653322 111 11222333 455 3333 11 1 36899999998875431 1 1
Q ss_pred cee-eeEEEE-CCEEEEEcccCCC---------CCCCeEEEEeCCCCce--EEccCCCC-cccccEE-EEeCCEEEEEcC
Q psy2979 189 FDV-SGIAML-DGFVYAVGGWDGS---------CRLDSVERYDPTKNEW--SYIEPMKL-AVTSPAV-VAHEGMLYVTGG 253 (400)
Q Consensus 189 r~~-~~~~~~-~~~iyv~GG~~~~---------~~~~~v~~yd~~~~~W--~~~~~l~~-~~~~~~~-~~~~~~iyv~GG 253 (400)
... ...+.. ++.||... .+.. .....++.++..+++- ..+-..+. +...... ..-+|+..++..
T Consensus 208 ~~~~~~~~wspD~~l~~~~-~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~ 286 (741)
T 1yr2_A 208 WVKFSGLAWLGNDALLYSR-FAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITS 286 (741)
T ss_dssp EEESCCCEESTTSEEEEEE-CCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred CceeccEEEECCCEEEEEE-ecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEE
Confidence 111 122222 33444432 2221 1234688888876642 12222221 1111222 223554333333
Q ss_pred ccccCCC-CcceEEEEeCCCC--c-eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCC--CeEEEcc
Q psy2979 254 AILEDGD-GIEQVQRYNPKVN--Q-WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAE--NTWEYKS 327 (400)
Q Consensus 254 ~~~~~~~-~~~~v~~yd~~~~--~-W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~~ 327 (400)
. ++. ..+.++.+|..+. . |..+.+-....... +..-++.||+....+.. ...++.+|..+ ..|..+-
T Consensus 287 ~---~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~---~~~l~~~d~~~~~~~~~~l~ 359 (741)
T 1yr2_A 287 S---EGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAP---LKKIVRVDLSGSTPRFDTVV 359 (741)
T ss_dssp E---CTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCT---TCEEEEEECSSSSCEEEEEE
T ss_pred E---ccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCC---CCEEEEEeCCCCccccEEEe
Confidence 2 221 1458999998776 6 87775433222222 23446777777643222 45899999887 5798875
Q ss_pred CCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 328 PMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 328 ~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
+-... ....+...++++++.... + ....++.+|+..+.-+.+
T Consensus 360 ~~~~~-~l~~~~~~~~~lv~~~~~-d---g~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 360 PESKD-NLESVGIAGNRLFASYIH-D---AKSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp CCCSS-EEEEEEEEBTEEEEEEEE-T---TEEEEEEEETTSCEEEEC
T ss_pred cCCCC-eEEEEEEECCEEEEEEEE-C---CEEEEEEEeCCCCceeec
Confidence 33221 112233448888887654 2 245788999865544443
No 331
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=82.10 E-value=32 Score=31.82 Aligned_cols=167 Identities=9% Similarity=0.014 Sum_probs=78.0
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCC----ceEEccC---C----CCcccccEEEEeCCEEEEEcCccccCCCCcceEE
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKN----EWSYIEP---M----KLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQ 266 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~~~~---l----~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~ 266 (400)
.+++|+-|..+ +.++++|..++ +-.+.-. + ...+.++..+.-++ |||..-.. .++.....+.
T Consensus 95 r~~l~v~~l~s-----~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~-~~g~~~g~v~ 167 (462)
T 2ece_A 95 RRFLIVPGLRS-----SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGN-EEGEGPGGIL 167 (462)
T ss_dssp SCEEEEEBTTT-----CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEE-TTSCSCCEEE
T ss_pred CCEEEEccCCC-----CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCC-cCCCCCCeEE
Confidence 35677766543 56899998766 3222210 1 11122222344466 88753221 0222267899
Q ss_pred EEeCCCCceeeccCCC-CC-ceeeeEE-EECCeEEEEcC----------cCCC----CCCCCeEEEEECCCCeEEEccCC
Q psy2979 267 RYNPKVNQWQDLAPML-IP-RSGAAIC-ALDSCIYVLGG----------WHAS----TENTNRVECYHIAENTWEYKSPM 329 (400)
Q Consensus 267 ~yd~~~~~W~~~~~~~-~~-r~~~~~~-~~~~~iyv~GG----------~~~~----~~~~~~v~~yd~~~~~W~~~~~~ 329 (400)
.+|+.+.+-..--+.+ .+ ...+... .-++++++..- .+.. .. .+++..||..+++ .++.+
T Consensus 168 vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~-~d~V~v~D~~~~k--~~~tI 244 (462)
T 2ece_A 168 MLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY-GNRIHFWDLRKRK--RIHSL 244 (462)
T ss_dssp EECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS-CCEEEEEETTTTE--EEEEE
T ss_pred EEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc-CCEEEEEECCCCc--EeeEE
Confidence 9999877632211111 11 1122222 22444444442 2221 12 5799999998864 33333
Q ss_pred cCccC--cceEEEE-----CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 330 KEKRY--RPGIAVI-----DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 330 ~~~~~--~~~~~~~-----~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
+.+.. .+.-..+ +..+|+..-. +.....+.|++|....++|+...
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~-~~~~Lss~V~v~~~d~g~~~~~~ 296 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVV-SLKDLSSSIWLWFYEDGKWNAEK 296 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEE-ETTTCCEEEEEEEEETTEEEEEE
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEee-eccCCCceEEEEEecCCceeEEE
Confidence 33211 1111112 4567776652 11112345655444457776554
No 332
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=82.07 E-value=26 Score=30.86 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=32.9
Q ss_pred CCeEEEEECC-CCeEEEccCCc--CccCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCCCcEE----EecCCCC
Q psy2979 310 TNRVECYHIA-ENTWEYKSPMK--EKRYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWE----IMSHLPS 379 (400)
Q Consensus 310 ~~~v~~yd~~-~~~W~~~~~~~--~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~----~~~~~~~ 379 (400)
.+.+..||.. +++...+.... .....+...++ +| .+|+.+.. ++ .-.++.+|+.+++.. .+..+|.
T Consensus 166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~-~~---~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA-GN---RICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT-TT---EEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC-CC---eEEEEEEeCCCCcEEEccceEEcCCC
Confidence 4579999987 67665443222 11122333334 44 67776533 11 123444556566643 3455554
No 333
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=80.78 E-value=34 Score=31.33 Aligned_cols=149 Identities=11% Similarity=0.126 Sum_probs=78.0
Q ss_pred eeEEEEC----CeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCC
Q psy2979 150 HGLVVSG----RNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKN 224 (400)
Q Consensus 150 ~~~~~~~----~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 224 (400)
.++++-. +. ||+......+..+|+.+++...+.... . .-.+++. .++.||+..-.. ......+..++....
T Consensus 142 ~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~~~~~-~-~P~giavd~dG~lyVad~~~-~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 142 WRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIKTTNI-G-QCADVNFTLNGDMVVVDDQS-SDTNTGIYLFTRASG 217 (433)
T ss_dssp CEEEECTTTTTCE-EEEECBTSCEEEEETTTTEEEEECCCC-S-CEEEEEECTTCCEEEEECCS-CTTSEEEEEECGGGT
T ss_pred ceEEEccccCCCE-EEEEeCCCCEEEEECCCCEEEEeecCC-C-CccEEEECCCCCEEEEcCCC-CcccceEEEEECCCC
Confidence 3455542 56 999844488999999888877665411 1 1122222 255688874321 111223555554322
Q ss_pred ceE---EccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCce-eeccCCCCCceeeeEEEE-CC-e
Q psy2979 225 EWS---YIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQW-QDLAPMLIPRSGAAICAL-DS-C 296 (400)
Q Consensus 225 ~W~---~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~-~~-~ 296 (400)
|. .++.+..+ ..+++. ++.||+.-.. ...+++||+.+..- +.+...........++.. ++ .
T Consensus 218 -~~~~~~~~~~~~P---~giavd~~~G~lyv~d~~-------~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 218 -FTERLSLCNARGA---KTCAVHPQNGKIYYTRYH-------HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp -TCCEEEEEECSSB---CCCEECTTTCCEEECBTT-------CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred -eeccccccccCCC---CEEEEeCCCCeEEEEECC-------CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 21 22222211 223332 6889987543 34799999986654 222211111111233333 44 5
Q ss_pred EEEEcCcCCCCCCCCeEEEEECC
Q psy2979 297 IYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 297 iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
||+..-. ...++++++.
T Consensus 287 LYvad~~------~~~I~~~~~d 303 (433)
T 4hw6_A 287 AYIIYNG------KHCIYRVDYN 303 (433)
T ss_dssp EEEEETT------TTEEEEEEBC
T ss_pred EEEEeCC------CCEEEEEeCC
Confidence 9998743 5688887754
No 334
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=78.28 E-value=37 Score=30.31 Aligned_cols=148 Identities=14% Similarity=0.100 Sum_probs=83.1
Q ss_pred eeEEEECCeEEEEEeecCEEEEEECCCCCe--EEc----cCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeC
Q psy2979 150 HGLVVSGRNTIYCLDIVDIVYVAASMHKIL--HSL----GSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDP 221 (400)
Q Consensus 150 ~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w--~~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 221 (400)
-+++..++. +|++. .+.+|+++.....- ..+ +.+|. .--++... ++++|++-| +..++|+.
T Consensus 184 DAv~~~~g~-~~fFk-g~~~Wr~~~~~~~~~p~~I~~~wpgLP~--~iDAa~~~~~~g~~~fFkg-------~~yWr~~~ 252 (365)
T 3ba0_A 184 DAVTTVGNK-IFFFK-DRFFWLKVSERPKTSVNLISSLWPTLPS--GIEAAYEIEARNQVFLFKD-------DKYWLISN 252 (365)
T ss_dssp SCEEEETTE-EEEEE-TTEEEECCSSCCCCCEEEHHHHCSSCCS--SCCEEEEEGGGTEEEEEET-------TEEEECST
T ss_pred eeEEEcCCe-EEEEe-CCEEEEEcCCCccCCccchhhhccCCCC--CccEEEEecCCCEEEEEeC-------CEEEEEcC
Confidence 455667888 88873 35677776544221 111 12332 11122333 789999977 55777765
Q ss_pred CCCc--e-EEccC--CCCccccc-EEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC------C-CCCce
Q psy2979 222 TKNE--W-SYIEP--MKLAVTSP-AVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP------M-LIPRS 286 (400)
Q Consensus 222 ~~~~--W-~~~~~--l~~~~~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~------~-~~~r~ 286 (400)
..-. + ..+.. +|.....- ++... ++++|++-|. ..|+||..+++-..--| . ..+..
T Consensus 253 ~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG~---------~yw~yd~~~~~v~~gyPk~I~~~f~g~p~~ 323 (365)
T 3ba0_A 253 LRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVDN---------QYWRYDERRQMMDPGYPKLITKNFQGIGPK 323 (365)
T ss_dssp TSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEETT---------EEEEEETTTTEECSSCCCCHHHHSTTCCSS
T ss_pred CcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEECC---------EEEEEeCCcceecCCCCcchhhcCCCCCCc
Confidence 4221 1 12322 33321122 23333 5899999886 79999987665332101 1 12222
Q ss_pred eeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE
Q psy2979 287 GAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEY 325 (400)
Q Consensus 287 ~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 325 (400)
.-++... ++++|.+-|. ..|+||..+++-..
T Consensus 324 iDaA~~~~~g~~YfFkg~--------~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 324 IDAVFYSKNKYYYFFQGS--------NQFEYDFLLQRITK 355 (365)
T ss_dssp CSEEEEETTTEEEEEETT--------EEEEEETTTTEEEE
T ss_pred cceeeEecCCcEEEEeCC--------EEEEEECCccEEec
Confidence 3344445 8899999863 79999998877554
No 335
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=77.93 E-value=52 Score=31.80 Aligned_cols=186 Identities=16% Similarity=0.127 Sum_probs=108.2
Q ss_pred eeEEEE--CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEE--ECCEEEEEcccCCCCCCCeEEEEeCCCC
Q psy2979 150 HGLVVS--GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM--LDGFVYAVGGWDGSCRLDSVERYDPTKN 224 (400)
Q Consensus 150 ~~~~~~--~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 224 (400)
.+++.- ++. ||+. .....++.+++....++.+..-... .-.++++ .++.||+.-. ....+++.++...
T Consensus 352 ~~ld~d~~~~~-ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~-~p~GlAvD~~~~~lY~tD~-----~~~~I~v~~~~G~ 424 (619)
T 3s94_A 352 IAIDYDPVEGY-IYWTDDEVRAIRRSFIDGSGSQFVVTAQIA-HPDGIAVDWVARNLYWTDT-----GTDRIEVTRLNGT 424 (619)
T ss_dssp EEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCS-CCCEEEEETTTTEEEEEET-----TTTEEEEEETTSC
T ss_pred EEEEEEcCCCe-EEEEeCCCCeEEEEEcCCCccEEEEECCCC-CcCceEEecccCcEEEEeC-----CCCcEEEEeCCCC
Confidence 444443 466 9988 3467899999987666554432111 1123444 4789999732 2357888888765
Q ss_pred ceEEcc--CCCCcccccEEEEe--CCEEEEEc-CccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEEE--CC
Q psy2979 225 EWSYIE--PMKLAVTSPAVVAH--EGMLYVTG-GAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICAL--DS 295 (400)
Q Consensus 225 ~W~~~~--~l~~~~~~~~~~~~--~~~iyv~G-G~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~--~~ 295 (400)
.-..+. .+..|+ +.++. +|.||+.. |. ...+++.+.....-+.+. .+..| .+++.- ++
T Consensus 425 ~~~~l~~~~l~~P~---~iavdp~~G~ly~tD~g~-------~~~I~r~~~dG~~~~~l~~~~l~~P---~GlalD~~~~ 491 (619)
T 3s94_A 425 MRKILISEDLEEPR---AIVLDPMVGYMYWTDWGE-------IPKIERAALDGSDRVVLVNTSLGWP---NGLALDYDEG 491 (619)
T ss_dssp SCEEEECTTCCSEE---EEEEETTTTEEEEEECSS-------SCEEEEEETTSCSCEEEECSSCSCE---EEEEEETTTT
T ss_pred eEEEEEECCCCCee---eEEEEcCCCcEEEecCCC-------CCEEEEEccCCCccEEEEeCCCCCC---eeeEEcccCC
Confidence 433332 233332 34443 58999985 22 246888887654333322 23222 233333 68
Q ss_pred eEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc--CCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 296 CIYVLGGWHASTENTNRVECYHIAENTWEYKS--PMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 296 ~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+||+.... ...++++++....=+.+. .++ .-.++++.+++||+.--. ...|++.|..++.
T Consensus 492 ~LY~aD~~------~~~I~~~~~dG~~~~~~~~~~l~---~P~glav~~~~ly~tD~~------~~~I~~~~k~~g~ 553 (619)
T 3s94_A 492 KIYWGDAK------TDKIEVMNTDGTGRRVLVEDKIP---HIFGFTLLGDYVYWTDWQ------RRSIERVHKRSAE 553 (619)
T ss_dssp EEEEEETT------TTEEEEEESSSCCCEEEEECCCC---SSCCEEEETTEEEEECTT------SSCEEEEESSSCC
T ss_pred EEEEEECC------CCEEEEEecCCCceEEEeccCCC---CcEEEEEECCEEEEeecC------CCeEEEEEcCCCc
Confidence 99999754 578999998654322221 222 234677889999997533 3456677666653
No 336
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=77.23 E-value=41 Score=30.20 Aligned_cols=27 Identities=7% Similarity=0.159 Sum_probs=18.9
Q ss_pred CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 342 DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 342 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
+++.++.|+. + ..|.+||..+++-..+
T Consensus 353 ~~~~l~s~s~-d-----g~v~iwd~~~~~~~~~ 379 (447)
T 3dw8_B 353 SDSVVMTGSY-N-----NFFRMFDRNTKRDITL 379 (447)
T ss_dssp TSSEEEEECS-T-----TEEEEEETTTCCEEEE
T ss_pred CCCEEEEecc-C-----CEEEEEEcCCCcceee
Confidence 5666677776 2 4789999988766543
No 337
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=77.15 E-value=4.9 Score=31.60 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=34.9
Q ss_pred ceEEEE-CCeEEehhhHHHhhcCcccccc--------------ceeecCCCCHHHHHHHhh
Q psy2979 19 DVTLCV-DGSKFPAHRVVLAASSPYFKVL--------------ETIRLPQLSPYFLHDCVE 64 (400)
Q Consensus 19 Dv~l~~-~~~~~~~hr~vLaa~s~yf~~m--------------~~vrl~~l~~~~l~~~i~ 64 (400)
-|+|+. ||+.|..++.+ |..|..++.| ..|.|+.++...|...++
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVie 67 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIE 67 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHH
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHH
Confidence 466665 89999999998 7889998765 348899999986665443
No 338
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=75.70 E-value=50 Score=30.49 Aligned_cols=211 Identities=8% Similarity=-0.016 Sum_probs=95.8
Q ss_pred CeEEEEE-eecCEEEEEECCCC----CeEEccC---C--CCc-ceeeeEEE-ECCEEEEE--cccCCCCCCCeEEEEeCC
Q psy2979 157 RNTIYCL-DIVDIVYVAASMHK----ILHSLGS---L--KFD-FDVSGIAM-LDGFVYAV--GGWDGSCRLDSVERYDPT 222 (400)
Q Consensus 157 ~~~iyv~-~~~~~~~~yd~~~~----~w~~~~~---~--~~~-r~~~~~~~-~~~~iyv~--GG~~~~~~~~~v~~yd~~ 222 (400)
.+.+|+- ..++.++.+|..++ +-.+.-. + ... ..-|.+.. -++ |||. |+..+ .....+..+|..
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g-~~~g~v~vlD~~ 172 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEG-EGPGGILMLDHY 172 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTS-CSCCEEEEECTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCC-CCCCeEEEEECC
Confidence 3425555 45567889997655 2222110 1 001 12222333 355 7764 33222 334679999999
Q ss_pred CCceEEccCCC--CcccccEE-EEeCCEEEEEcCccc----c---CCC----C-cceEEEEeCCCCceeeccCCCCCc--
Q psy2979 223 KNEWSYIEPMK--LAVTSPAV-VAHEGMLYVTGGAIL----E---DGD----G-IEQVQRYNPKVNQWQDLAPMLIPR-- 285 (400)
Q Consensus 223 ~~~W~~~~~l~--~~~~~~~~-~~~~~~iyv~GG~~~----~---~~~----~-~~~v~~yd~~~~~W~~~~~~~~~r-- 285 (400)
+.+=...-+.+ .....+.. ..-++++++..-... . +.. . .+.+..||..+.+ .+..++.+.
T Consensus 173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg~~g 250 (462)
T 2ece_A 173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLGEEN 250 (462)
T ss_dssp TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESCTTE
T ss_pred CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecCCCC
Confidence 77532221111 11111112 223444444432100 0 111 1 4689999998753 333222221
Q ss_pred ee--eeEEEE---CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC--CcC----------c------cCcceEEEE-
Q psy2979 286 SG--AAICAL---DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP--MKE----------K------RYRPGIAVI- 341 (400)
Q Consensus 286 ~~--~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~--~~~----------~------~~~~~~~~~- 341 (400)
.. +-...+ +..+|+..-.+.... .++++.|....++|+.... .+. + ....+.+.+
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~L-ss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDL-SSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTC-CEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCC-CceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 11 111112 345777664111111 4566665555577866542 111 0 122333334
Q ss_pred --CCEEEEEcCccCCCCCCCeEEEEECC-CCcEEEecCCC
Q psy2979 342 --DGKIYVLGGEEGWDGYHDSIECYDVD-NDSWEIMSHLP 378 (400)
Q Consensus 342 --~~~lyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~~ 378 (400)
+..||+.--. .++|.+||+. ..+.+.+...+
T Consensus 330 ~DGrfLYVSnrg------~d~VavfdV~d~~~~~lv~~I~ 363 (462)
T 2ece_A 330 LDDKFLYLSLWG------IGEVRQYDISNPFKPVLTGKVK 363 (462)
T ss_dssp TTSCEEEEEETT------TTEEEEEECSSTTSCEEEEEEE
T ss_pred CCCCEEEEEeCC------CCEEEEEEecCCCCcEEEEEEE
Confidence 4458876432 3689999985 33455554443
No 339
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=75.17 E-value=68 Score=31.76 Aligned_cols=150 Identities=8% Similarity=-0.002 Sum_probs=76.8
Q ss_pred cCEEEEEECCCC--Ce--EEccCCCCcceeeeEE-EECCEEEEEcccCCCCCCCeEEEEeCCC-CceEE-ccCCCCcccc
Q psy2979 166 VDIVYVAASMHK--IL--HSLGSLKFDFDVSGIA-MLDGFVYAVGGWDGSCRLDSVERYDPTK-NEWSY-IEPMKLAVTS 238 (400)
Q Consensus 166 ~~~~~~yd~~~~--~w--~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~-~~~l~~~~~~ 238 (400)
...++.+|..+. .+ ..+.+-.. ...++.. ..++.||+..-.+ ......++.+|..+ ..|+. +-+-.....-
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~~-~~~~s~~~~~g~~l~~~t~~~-~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l 371 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPREK-GVRYDVQMHGTSHLVILTNEG-GAVNHKLLIAPRGQPSDWSHVLVDHSEDVFM 371 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCCT-TCCEEEEEETTTEEEEEECTT-TCTTCEEEEEETTSTTCCCCEEECCCSSEEE
T ss_pred CceEEEEECCCCCCCceeEEeecCCC-CceEEEeeeeCCEEEEEeCCC-CCCCcEEEEEcCCCcccceeeEECCCCCcEE
Confidence 456888888764 45 54433111 1112222 2377888886543 12235788889876 67875 3221222121
Q ss_pred cEEEEeCCEEEEEcCccccCCCCcceEEEEeC-------CCCc-eeeccCCCCCceeeeEE-----EEC-CeEEEE-cCc
Q psy2979 239 PAVVAHEGMLYVTGGAILEDGDGIEQVQRYNP-------KVNQ-WQDLAPMLIPRSGAAIC-----ALD-SCIYVL-GGW 303 (400)
Q Consensus 239 ~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~-------~~~~-W~~~~~~~~~r~~~~~~-----~~~-~~iyv~-GG~ 303 (400)
......++.|++.... ++ ...++.+|+ .+.. .+.++ ++......... ..+ +.+++. ...
T Consensus 372 ~~~~~~~~~lv~~~~~---~g--~~~l~~~dl~~~~~~~~~g~~~~~l~-l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~ 445 (751)
T 2xe4_A 372 ESIAVRSNYLVVAGRR---AG--LTRIWTMMADSQDGVFKAGTGLREVV-MEEPIFTVHLVESQMLEYEEPTFRMEYSSL 445 (751)
T ss_dssp EEEEECSSEEEEEEEE---TT--EEEEEEEECCTTTSCCCTTTCCEECC-CCCSSCEEEECGGGCCCTTCSCEEEEEEET
T ss_pred EEEEEECCEEEEEEEe---CC--EEEEEEEecccccccccCCccceEEC-CCCceeEEEeccCcccCCCCCEEEEEEeCC
Confidence 2334457788777544 44 457889986 3333 44442 33222111111 122 233333 222
Q ss_pred CCCCCCCCeEEEEECCCCeEEEcc
Q psy2979 304 HASTENTNRVECYHIAENTWEYKS 327 (400)
Q Consensus 304 ~~~~~~~~~v~~yd~~~~~W~~~~ 327 (400)
.. ...++.||+.+++.+.+.
T Consensus 446 ---~~-P~~~~~~d~~~~~~~~l~ 465 (751)
T 2xe4_A 446 ---AT-PNTWFDVSPQDHSRTAVK 465 (751)
T ss_dssp ---TE-EEEEEEECTTTCCEEEEE
T ss_pred ---CC-CCEEEEEECCCCcEEEEe
Confidence 11 457899999888776664
No 340
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=74.78 E-value=43 Score=30.02 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=35.9
Q ss_pred CCeEEEEcCcCCCCCCCCeEEEEECCCC--eEEEccCCc----CccCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEE
Q psy2979 294 DSCIYVLGGWHASTENTNRVECYHIAEN--TWEYKSPMK----EKRYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECY 364 (400)
Q Consensus 294 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~----~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~y 364 (400)
++.+++.| . ...+..||..+. .+..+...| ........+.+ ++ ++++.|+. + ..|.+|
T Consensus 188 ~~~~l~s~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-d-----g~i~iw 254 (447)
T 3dw8_B 188 DYETYLSA-D------DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS-K-----GTIRLC 254 (447)
T ss_dssp TSSEEEEE-C------SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET-T-----SCEEEE
T ss_pred CCCEEEEe-C------CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC-C-----CeEEEE
Confidence 56666665 3 457889998732 233221111 11122223333 34 67777776 2 368899
Q ss_pred ECCCCcE
Q psy2979 365 DVDNDSW 371 (400)
Q Consensus 365 d~~~~~W 371 (400)
|..+.+.
T Consensus 255 d~~~~~~ 261 (447)
T 3dw8_B 255 DMRASAL 261 (447)
T ss_dssp ETTTCSS
T ss_pred ECcCCcc
Confidence 9887653
No 341
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=74.54 E-value=44 Score=29.26 Aligned_cols=180 Identities=10% Similarity=-0.050 Sum_probs=85.0
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDF 189 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r 189 (400)
+.+.+.|+.+ ..+..+|..+++-...-..+. .-.++....+. +++ ...+.+..||..++ ...+..+..+.
T Consensus 71 ~~~~~~~~~d-----~~v~iWd~~~~~~~~~~~~~~--~v~~v~~~~~~-~~~-~~~~~i~i~d~~~~-~~~~~~~~~~~ 140 (355)
T 3vu4_A 71 NYVAFVTGVK-----EVVHIWDDVKKQDVSRIKVDA--PVKDLFLSREF-IVV-SYGDVISVFKFGNP-WKRITDDIRFG 140 (355)
T ss_dssp SEEEEECSST-----TEEEEEETTTTEEEEEEECSS--CEEEEEECSSE-EEE-EETTEEEEEESSTT-CCBSSCCEEEE
T ss_pred CEEEEEECCc-----cEEEEEECCCCcEEEEEECCC--ceEEEEEcCCE-EEE-EEcCEEEEEECCCC-ceeeEEeccCC
Confidence 4555666644 378889988876432111222 11223332333 333 34567888888765 11111111111
Q ss_pred eeeeEEEECCEEEEE-cccCCCCCCCeEEEEeCCCCc-eEE-------------ccCCCCcccccEEEE--eCCEEEEEc
Q psy2979 190 DVSGIAMLDGFVYAV-GGWDGSCRLDSVERYDPTKNE-WSY-------------IEPMKLAVTSPAVVA--HEGMLYVTG 252 (400)
Q Consensus 190 ~~~~~~~~~~~iyv~-GG~~~~~~~~~v~~yd~~~~~-W~~-------------~~~l~~~~~~~~~~~--~~~~iyv~G 252 (400)
. .++...+.+.+. |+.+ ..+..||..+++ +.. +..+......-..+. -++.+++.|
T Consensus 141 ~--~~~~s~~~la~~sg~~~-----g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 141 G--VCEFSNGLLVYSNEFNL-----GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp E--EEEEETTEEEEEESSCT-----TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred c--eEEEEccEEEEeCCCcC-----cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence 1 111122444444 4433 358888887653 100 000111111111222 267788888
Q ss_pred CccccCCCCcce-EEEEeCCCCceeeccCCC---CCceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 253 GAILEDGDGIEQ-VQRYNPKVNQWQDLAPML---IPRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 253 G~~~~~~~~~~~-v~~yd~~~~~W~~~~~~~---~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
+. ++ . +..||..+.+-.. .+. ....-.+++. -+++.++.|+. ...+..||..+.
T Consensus 214 s~---d~----~~v~iwd~~~~~~~~--~~~~g~h~~~v~~~~~s~~~~~l~s~s~------d~~v~iw~~~~~ 272 (355)
T 3vu4_A 214 SQ---DG----TIIRVFKTEDGVLVR--EFRRGLDRADVVDMKWSTDGSKLAVVSD------KWTLHVFEIFND 272 (355)
T ss_dssp ET---TC----SEEEEEETTTCCEEE--EEECTTCCSCEEEEEECTTSCEEEEEET------TCEEEEEESSCC
T ss_pred eC---CC----CEEEEEECCCCcEEE--EEEcCCCCCcEEEEEECCCCCEEEEEEC------CCEEEEEEccCC
Confidence 87 54 5 8889987654321 121 1111122222 26777777776 457888887654
No 342
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=74.32 E-value=47 Score=29.56 Aligned_cols=86 Identities=15% Similarity=0.160 Sum_probs=48.9
Q ss_pred CCeEEEEcCcCCC----CCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE-CCE--EEEEcCccCCCCCCCeEEEEEC
Q psy2979 294 DSCIYVLGGWHAS----TENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-DGK--IYVLGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 294 ~~~iyv~GG~~~~----~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~--lyv~GG~~~~~~~~~~v~~yd~ 366 (400)
++++|+....... .. .+.++.+|+.+.+- +..++.+....++..- +|+ +|+..+. .+.|.+||.
T Consensus 278 ~~~lyV~~~~~~~~~~~~~-~~~V~VID~~t~~v--v~~i~~g~~p~~i~~s~Dg~~~l~v~~~~------~~~V~ViD~ 348 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAA-AKEVTSVTGLVGQT--SSQISLGHDVDAISVAQDGGPDLYALSAG------TEVLHIYDA 348 (373)
T ss_pred CCEEEEEeccCCcccccCC-CCeEEEEECCCCEE--EEEEECCCCcCeEEECCCCCeEEEEEcCC------CCeEEEEEC
Confidence 5689987542111 12 46899999987754 2233433333343333 554 5554422 368999998
Q ss_pred CCCcEEEecC-CCCCCCceeeEEEc
Q psy2979 367 DNDSWEIMSH-LPSARSWLGCVPLQ 390 (400)
Q Consensus 367 ~~~~W~~~~~-~~~~r~~~~~~~~~ 390 (400)
++. +.+.. .+.++.-+++...+
T Consensus 349 ~t~--~vv~~i~~vG~~P~~~~~~~ 371 (373)
T 2mad_H 349 GAG--DQDQSTVELGSGPQVLSVMN 371 (373)
T ss_pred CCC--CEEeeecCCCCCCcEEEEcc
Confidence 765 44545 34555556666554
No 343
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=74.27 E-value=45 Score=29.27 Aligned_cols=162 Identities=8% Similarity=0.071 Sum_probs=72.3
Q ss_pred CeEEEEeCC-CCceEEccCC--CC-cc-cccEEEEeCC-EEEEEcCccccCCCCcceEEE--EeCCCCcee----eccCC
Q psy2979 214 DSVERYDPT-KNEWSYIEPM--KL-AV-TSPAVVAHEG-MLYVTGGAILEDGDGIEQVQR--YNPKVNQWQ----DLAPM 281 (400)
Q Consensus 214 ~~v~~yd~~-~~~W~~~~~l--~~-~~-~~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~--yd~~~~~W~----~~~~~ 281 (400)
..+..||.. +++...+..+ +. .. ..+.+..-++ .+|+.+.. + +.+.. +|+.+.+.. .+..+
T Consensus 167 ~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~---~----~~v~v~~~~~~~g~~~~~~~~~~~~ 239 (365)
T 1jof_A 167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA---G----NRICEYVIDPATHMPVYTHHSFPLI 239 (365)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT---T----TEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC---C----CeEEEEEEeCCCCcEEEccceEEcC
Confidence 578889887 6766544322 21 11 1112222244 67776543 2 24444 455455542 34444
Q ss_pred CCC----c-------eeeeEE-EE-CC-eEEEEcCcCCCCCCCCeEEEEECC-CCeEEEcc----CCcCccCcceEEE--
Q psy2979 282 LIP----R-------SGAAIC-AL-DS-CIYVLGGWHASTENTNRVECYHIA-ENTWEYKS----PMKEKRYRPGIAV-- 340 (400)
Q Consensus 282 ~~~----r-------~~~~~~-~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~----~~~~~~~~~~~~~-- 340 (400)
|.. . ....++ .. ++ .||+......... ...+..|+.. +++...+. .............
T Consensus 240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~-~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~ 318 (365)
T 1jof_A 240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFEL-QGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCP 318 (365)
T ss_dssp CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTS-CCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECT
T ss_pred CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCC-CCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCC
Confidence 432 1 122233 22 55 4665442211111 2378888874 56655421 1111111112222
Q ss_pred -ECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecC--CCCCCCceeeEEE
Q psy2979 341 -IDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH--LPSARSWLGCVPL 389 (400)
Q Consensus 341 -~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~--~~~~r~~~~~~~~ 389 (400)
-++.||+.+.. .+.|.+|+...+.-+.+.. .|.|-+...++.+
T Consensus 319 ~dg~~l~v~~~~------~~~v~v~~~~~~~l~~~~~~~~~~p~~~~~~~~~ 364 (365)
T 1jof_A 319 WSDEWMAITDDQ------EGWLEIYRWKDEFLHRVARVRIPEPGFGMNAIWY 364 (365)
T ss_dssp TCTTEEEEECSS------SCEEEEEEEETTEEEEEEEEECCSTTEEEEEEEE
T ss_pred cCCCEEEEEEcC------CCeEEEEEEchhhCceeeEEEcCCCcceeeeEec
Confidence 24566665533 2467777766654444432 4444444444433
No 344
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=73.29 E-value=47 Score=29.05 Aligned_cols=141 Identities=9% Similarity=0.143 Sum_probs=68.1
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceee
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD 277 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 277 (400)
.+.+.+.||.+ ..+..||..+++-...-..+.+ -.++....+.+++... +.+..||..+. ...
T Consensus 70 ~~~~~~~~~~d-----~~v~iWd~~~~~~~~~~~~~~~--v~~v~~~~~~~~~~~~---------~~i~i~d~~~~-~~~ 132 (355)
T 3vu4_A 70 TNYVAFVTGVK-----EVVHIWDDVKKQDVSRIKVDAP--VKDLFLSREFIVVSYG---------DVISVFKFGNP-WKR 132 (355)
T ss_dssp SSEEEEECSST-----TEEEEEETTTTEEEEEEECSSC--EEEEEECSSEEEEEET---------TEEEEEESSTT-CCB
T ss_pred CCEEEEEECCc-----cEEEEEECCCCcEEEEEECCCc--eEEEEEcCCEEEEEEc---------CEEEEEECCCC-cee
Confidence 34555666644 3789999988864332222221 1122233444444432 26888998765 112
Q ss_pred ccCCCCCceeeeEEEE-CCeEEEE-cCcCCCCCCCCeEEEEECCCCe-EEE-------------ccCCcCccCcceEEEE
Q psy2979 278 LAPMLIPRSGAAICAL-DSCIYVL-GGWHASTENTNRVECYHIAENT-WEY-------------KSPMKEKRYRPGIAVI 341 (400)
Q Consensus 278 ~~~~~~~r~~~~~~~~-~~~iyv~-GG~~~~~~~~~~v~~yd~~~~~-W~~-------------~~~~~~~~~~~~~~~~ 341 (400)
+..+..+ .+.+.+ .+.+.+. |+. ...+..||..+.. +.. +..+........++.+
T Consensus 133 ~~~~~~~---~~~~~~s~~~la~~sg~~------~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~ 203 (355)
T 3vu4_A 133 ITDDIRF---GGVCEFSNGLLVYSNEFN------LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRL 203 (355)
T ss_dssp SSCCEEE---EEEEEEETTEEEEEESSC------TTCEEEEECCC------------------CCEEECCCSSCEEEEEE
T ss_pred eEEeccC---CceEEEEccEEEEeCCCc------CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEE
Confidence 2222221 112222 3444443 443 4578888887653 110 1111111112223333
Q ss_pred --CCEEEEEcCccCCCCCCCe-EEEEECCCCc
Q psy2979 342 --DGKIYVLGGEEGWDGYHDS-IECYDVDNDS 370 (400)
Q Consensus 342 --~~~lyv~GG~~~~~~~~~~-v~~yd~~~~~ 370 (400)
++++++.|+. + .. |.+||..+.+
T Consensus 204 s~~g~~l~s~s~-d-----~~~v~iwd~~~~~ 229 (355)
T 3vu4_A 204 NRKSDMVATCSQ-D-----GTIIRVFKTEDGV 229 (355)
T ss_dssp CTTSSEEEEEET-T-----CSEEEEEETTTCC
T ss_pred CCCCCEEEEEeC-C-----CCEEEEEECCCCc
Confidence 6777788876 2 34 8889988764
No 345
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=72.68 E-value=3.3 Score=30.04 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=34.2
Q ss_pred eEEE-ECCeEEehhhHHHhhcCcccccc------------ceeecCCCCHHHHHHHhh
Q psy2979 20 VTLC-VDGSKFPAHRVVLAASSPYFKVL------------ETIRLPQLSPYFLHDCVE 64 (400)
Q Consensus 20 v~l~-~~~~~~~~hr~vLaa~s~yf~~m------------~~vrl~~l~~~~l~~~i~ 64 (400)
|+|+ .||.+|..+|.+ |..|..++.| ..|.||.++...|...++
T Consensus 19 v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVie 75 (112)
T 1vcb_B 19 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCM 75 (112)
T ss_dssp EEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHH
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHH
Confidence 6676 489999999995 7899988876 258899999986665443
No 346
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=72.52 E-value=53 Score=29.31 Aligned_cols=70 Identities=10% Similarity=0.047 Sum_probs=46.9
Q ss_pred eEEEEECCCCeEEEccCCcCccCcceEEEE-CC-EEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEE
Q psy2979 312 RVECYHIAENTWEYKSPMKEKRYRPGIAVI-DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPL 389 (400)
Q Consensus 312 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 389 (400)
.+..+|+.+++ .+..++.+...+++... ++ ++|+..+. ..+.|.++|..+ |+.+..++.++.-+++++-
T Consensus 295 ~~~ViD~~t~~--vv~~i~vg~~p~gi~~s~Dg~~l~va~~~-----~~~~VsVID~~t--~kvv~~I~vg~~P~~i~~~ 365 (368)
T 1mda_H 295 NTSSVTASVGQ--TSGPISNGHDSDAIIAAQDGASDNYANSA-----GTEVLDIYDAAS--DQDQSSVELDKGPESLSVQ 365 (368)
T ss_dssp EEEEEESSSCC--EEECCEEEEEECEEEECCSSSCEEEEEET-----TTTEEEEEESSS--CEEEEECCCCSCCCEEECC
T ss_pred CEEEEECCCCe--EEEEEECCCCcceEEECCCCCEEEEEccC-----CCCeEEEEECCC--CcEEEEEECCCCCCEEEee
Confidence 45599988875 45566665544454443 45 47776652 136899999765 6788888888887877664
Q ss_pred c
Q psy2979 390 Q 390 (400)
Q Consensus 390 ~ 390 (400)
+
T Consensus 366 ~ 366 (368)
T 1mda_H 366 N 366 (368)
T ss_dssp C
T ss_pred c
Confidence 4
No 347
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=71.45 E-value=70 Score=31.06 Aligned_cols=62 Identities=10% Similarity=-0.038 Sum_probs=33.9
Q ss_pred CeEEEEECCCCeE-EEccCCcCc---cCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 311 NRVECYHIAENTW-EYKSPMKEK---RYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 311 ~~v~~yd~~~~~W-~~~~~~~~~---~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
.+++.+|..+++- ..+...... ......+.. +|++++.... . ......++.+|+.+++...+
T Consensus 228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~-~-~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLN-R-AQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE-T-TSCEEEEEEEETTTCCEEEE
T ss_pred eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEc-C-CCCeEEEEEEeCCCCcceEE
Confidence 3788899887762 444322111 111112222 7886655433 1 12346789999988876554
No 348
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=71.40 E-value=83 Score=31.12 Aligned_cols=152 Identities=11% Similarity=0.017 Sum_probs=78.2
Q ss_pred CCeEEEEeCCCC--ce--EEccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCC-Cceee-ccCCCCCc
Q psy2979 213 LDSVERYDPTKN--EW--SYIEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKV-NQWQD-LAPMLIPR 285 (400)
Q Consensus 213 ~~~v~~yd~~~~--~W--~~~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~-~~W~~-~~~~~~~r 285 (400)
...++.+|+.+. .+ ..+.+-... ..+... ..++.||+.... ++.....++.+|..+ ..|+. +-+-....
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~~~-~~~s~~~~~g~~l~~~t~~---~~a~~~~L~~~d~~~~~~~~~~li~~~~~~ 369 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPREKG-VRYDVQMHGTSHLVILTNE---GGAVNHKLLIAPRGQPSDWSHVLVDHSEDV 369 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCCTT-CCEEEEEETTTEEEEEECT---TTCTTCEEEEEETTSTTCCCCEEECCCSSE
T ss_pred CceEEEEECCCCCCCceeEEeecCCCC-ceEEEeeeeCCEEEEEeCC---CCCCCcEEEEEcCCCcccceeeEECCCCCc
Confidence 457888898875 46 555432111 112222 337788888654 311145789999876 67876 43222222
Q ss_pred eeeeEEEECCeEEEEcCcCCCCCCCCeEEEEEC-------CCCe-EEEccCCcCccCcceEE-----EEC-CEEEEEcCc
Q psy2979 286 SGAAICALDSCIYVLGGWHASTENTNRVECYHI-------AENT-WEYKSPMKEKRYRPGIA-----VID-GKIYVLGGE 351 (400)
Q Consensus 286 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~-------~~~~-W~~~~~~~~~~~~~~~~-----~~~-~~lyv~GG~ 351 (400)
........++.|++..-.++ ...++.+|+ .++. -..++ +|......+.. ..+ +.+++...
T Consensus 370 ~l~~~~~~~~~lv~~~~~~g----~~~l~~~dl~~~~~~~~~g~~~~~l~-l~~~~~~~~~~~~~~~~~~~~~l~~~~s- 443 (751)
T 2xe4_A 370 FMESIAVRSNYLVVAGRRAG----LTRIWTMMADSQDGVFKAGTGLREVV-MEEPIFTVHLVESQMLEYEEPTFRMEYS- 443 (751)
T ss_dssp EEEEEEECSSEEEEEEEETT----EEEEEEEECCTTTSCCCTTTCCEECC-CCCSSCEEEECGGGCCCTTCSCEEEEEE-
T ss_pred EEEEEEEECCEEEEEEEeCC----EEEEEEEecccccccccCCccceEEC-CCCceeEEEeccCcccCCCCCEEEEEEe-
Confidence 22333444777777664322 457889986 3333 34432 22211111110 112 23333321
Q ss_pred cCCCCCCCeEEEEECCCCcEEEecC
Q psy2979 352 EGWDGYHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~~~W~~~~~ 376 (400)
+...-..++.||+.+++.+.+..
T Consensus 444 --s~~~P~~~~~~d~~~~~~~~l~~ 466 (751)
T 2xe4_A 444 --SLATPNTWFDVSPQDHSRTAVKV 466 (751)
T ss_dssp --ETTEEEEEEEECTTTCCEEEEEE
T ss_pred --CCCCCCEEEEEECCCCcEEEEec
Confidence 11234578899998887776653
No 349
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=70.64 E-value=96 Score=31.50 Aligned_cols=147 Identities=12% Similarity=0.017 Sum_probs=75.4
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCcee
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 276 (400)
++..+.|+.+ ..+..||..+++-...-..+. .-.++. -++...++|+. ++ .+..||..+..-.
T Consensus 69 g~~L~S~s~D-----~~v~lWd~~~~~~~~~~~~~~---~V~~v~~sp~g~~l~sgs~---dg----~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 69 GIYLVVINAK-----DTVYVLSLYSQKVLTTVFVPG---KITSIDTDASLDWMLIGLQ---NG----SMIVYDIDRDQLS 133 (902)
T ss_dssp TTEEEEEETT-----CEEEEEETTTCSEEEEEECSS---CEEEEECCTTCSEEEEEET---TS----CEEEEETTTTEEE
T ss_pred CCEEEEEECc-----CeEEEEECCCCcEEEEEcCCC---CEEEEEECCCCCEEEEEcC---CC----cEEEEECCCCccc
Confidence 4444445543 468889988775422111111 112222 25666667766 44 6889998876542
Q ss_pred ecc--------CCCCCc--eeeeEEEEC--CeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc------C-------
Q psy2979 277 DLA--------PMLIPR--SGAAICALD--SCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK------E------- 331 (400)
Q Consensus 277 ~~~--------~~~~~r--~~~~~~~~~--~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~------~------- 331 (400)
... ..+..+ .-.+++... +.++++|+. ...+ .||..+++-...-... .
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~------dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~ 206 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE------YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKT 206 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS------SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCT
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeC------CCcE-EEECCCCceEEEEecccCCcCCCccccccc
Confidence 110 001110 111222222 356667765 4578 9999887644321111 0
Q ss_pred --cc-CcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEE
Q psy2979 332 --KR-YRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 332 --~~-~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
.+ .....+.+ +++.++.|+. + ..|..||..+++-..
T Consensus 207 ~~~h~~~V~~v~fspdg~~lasgs~-D-----g~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 207 NEKRTPKVIQSLYHPNSLHIITIHE-D-----NSLVFWDANSGHMIM 247 (902)
T ss_dssp TSCBCCCEEEEEECTTSSEEEEEET-T-----CCEEEEETTTCCEEE
T ss_pred ccccCCCeEEEEEcCCCCEEEEEEC-C-----CeEEEEECCCCcEEE
Confidence 00 11122333 6777788876 3 368899998876543
No 350
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=70.28 E-value=5.9 Score=28.34 Aligned_cols=71 Identities=20% Similarity=0.283 Sum_probs=48.0
Q ss_pred eEEEECCeEEehhhHHHhhcCc-cccccce-------------eecCCCCHH---HHHHHhhhcccccCchhH-HHHHHH
Q psy2979 20 VTLCVDGSKFPAHRVVLAASSP-YFKVLET-------------IRLPQLSPY---FLHDCVEQCAIIKNNPQC-AQLVEE 81 (400)
Q Consensus 20 v~l~~~~~~~~~hr~vLaa~s~-yf~~m~~-------------vrl~~l~~~---~l~~~i~~~~l~~~~~~c-~~~l~~ 81 (400)
|+|.|+|..|...+..|+...+ +|..|.. .-|-.-++. .+++++.++.|......| ..++++
T Consensus 8 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~~E 87 (107)
T 3drz_A 8 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEE 87 (107)
T ss_dssp EEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCCCCCTTSCHHHHHHH
T ss_pred EEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEecCChHHHHHHHHHhCCCeeCCCCCCCHHHHHHH
Confidence 5799999999999999988754 3444411 112233444 677888899886644444 578888
Q ss_pred HHhcCCCcc
Q psy2979 82 AKLFHLLPD 90 (400)
Q Consensus 82 a~~~~~~~~ 90 (400)
|..|.+.+.
T Consensus 88 a~fy~l~~L 96 (107)
T 3drz_A 88 AEFYNITSL 96 (107)
T ss_dssp HHHHTCHHH
T ss_pred HHHCCCHHH
Confidence 877765443
No 351
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=69.75 E-value=36 Score=32.92 Aligned_cols=145 Identities=12% Similarity=0.120 Sum_probs=75.5
Q ss_pred eeEEEECCeEEEEEeecCEEEEEECCCC-CeE--Ec----cCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEe
Q psy2979 150 HGLVVSGRNTIYCLDIVDIVYVAASMHK-ILH--SL----GSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYD 220 (400)
Q Consensus 150 ~~~~~~~~~~iyv~~~~~~~~~yd~~~~-~w~--~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd 220 (400)
-+++...+. +|++.. +.+|.++.... ... .+ +.+|. ... ++... ++++|++-| +..|+|+
T Consensus 447 DAit~~rg~-~yfFKg-~~yWr~~~~~~~~~~P~~Is~~wp~LP~-~ID-AA~~~~~~~k~yFFkG-------~~yWry~ 515 (631)
T 1ck7_A 447 DGIAQIRGE-IFFFKD-RFIWRTVTPRDKPMGPLLVATFWPELPE-KID-AVYEAPQEEKAVFFAG-------NEYWIYS 515 (631)
T ss_dssp SEEEECSSS-EEEECS-SEEEEESCTTSCCEEEEEGGGTCTTSCS-SCS-BCCEETTTTEEEEEET-------TEEEEEE
T ss_pred ceeEecCCc-EEEEcC-CEEEEEcCCCCCCCCceeccccCCCCCc-cce-EEEEECCCCEEEEEec-------CEEEEEC
Confidence 455666777 888833 46777776542 111 11 12221 111 22222 578999977 5688888
Q ss_pred CCCC--ce-EEccC--CCCcccccEEEE---eCCEEEEEcCccccCCCCcceEEEEeCCCCceee-----cc-C-CCCCc
Q psy2979 221 PTKN--EW-SYIEP--MKLAVTSPAVVA---HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD-----LA-P-MLIPR 285 (400)
Q Consensus 221 ~~~~--~W-~~~~~--l~~~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-----~~-~-~~~~r 285 (400)
..+- -+ ..+.. +|.....--+|. .++++|++-|. ..|+||..+.+-.. +. . +..+.
T Consensus 516 ~~~l~~GYPk~Is~~G~P~~~~~IDAAf~~~~~gktYFFkG~---------~ywryd~~~~~vd~gYPk~i~~~w~G~p~ 586 (631)
T 1ck7_A 516 ASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD---------KFWRYNEVKKKMDPGFPKLIADAWNAIPD 586 (631)
T ss_dssp TTEECTTCCEEGGGGTCCTTCCCCCBCCCCTTTCEEEEEETT---------EEEEEETTTTEECTTCCEETTTSCSSCCT
T ss_pred CCccccCCCccchhcCCCCCCCcceeEEEecCCCeEEEEECC---------EEEEEcCCcccccCCCCcchHhhcCCCCC
Confidence 5310 00 11111 221111112222 37899999887 79999987653221 11 1 11222
Q ss_pred eeeeEEEEC--CeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 286 SGAAICALD--SCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 286 ~~~~~~~~~--~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
..-++...+ +++|++-|. ..|+||..+..
T Consensus 587 ~iDAAf~~~~~g~~YFFkG~--------~Ywr~d~~~~~ 617 (631)
T 1ck7_A 587 NLDAVVDLQGGGHSYFFKGA--------YYLKLENQSLK 617 (631)
T ss_dssp TCCEEECCTTSCBCEEEETT--------EEECCBTTBTT
T ss_pred CCcEeEEEcCCCeEEEEECC--------EEEEEeCccce
Confidence 223444443 799999874 67888876543
No 352
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=65.38 E-value=1.2e+02 Score=31.83 Aligned_cols=124 Identities=8% Similarity=-0.045 Sum_probs=74.9
Q ss_pred cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcc-eEEE
Q psy2979 262 IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRP-GIAV 340 (400)
Q Consensus 262 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~-~~~~ 340 (400)
...+..|+....+...+...+..-.-.+++.++|++.+.-| +++..|+...++.-....-..+.... ...+
T Consensus 863 ~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~ig--------~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~ 934 (1158)
T 3ei3_A 863 QGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASIN--------STVRLYEWTTEKELRTECNHYNNIMALYLKT 934 (1158)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEEEEEET--------TEEEEEEECTTSCEEEEEEECCCSCEEEEEE
T ss_pred ceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEEEcC--------CEEEEEECCCCceEEEEeeccccEEEEEEec
Confidence 45677777666666666544444445667788997666544 47888888766422211000011111 2334
Q ss_pred ECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEccccccccc
Q psy2979 341 IDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 341 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
.++.|++ |-. ...-.+..|++..++-..++.-..+|.-.++..+++.-++..|
T Consensus 935 ~~~~I~v-gD~----~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD 987 (1158)
T 3ei3_A 935 KGDFILV-GDL----MRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAE 987 (1158)
T ss_dssp ETTEEEE-EES----SBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEE
T ss_pred cCCEEEE-EEh----hheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEc
Confidence 5776654 433 1123566799999999999887888888888888765444333
No 353
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=65.06 E-value=1.2e+02 Score=30.68 Aligned_cols=186 Identities=10% Similarity=-0.055 Sum_probs=91.3
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcce
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFD 190 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~ 190 (400)
.+++.|+.+ ..+.+||....+-... ++....-.+++...+..|........+..+|..+++.... +..+..
T Consensus 30 ~~lAsgs~D-----g~I~lw~~~~~~~~~~--~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~--~~~~~~ 100 (902)
T 2oaj_A 30 NLLAIATVT-----GEVHIYGQQQVEVVIK--LEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTT--VFVPGK 100 (902)
T ss_dssp TEEEEEETT-----SEEEEECSTTCEEEEE--CSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEE--EECSSC
T ss_pred CEEEEEeCC-----CEEEEEeCCCcEEEEE--cCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEE--EcCCCC
Confidence 355566654 4677787665443221 1211122334444444133335566788888877653211 111111
Q ss_pred eeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEcc--------CCCCcc--cccEEEEe--CCEEEEEcCccc
Q psy2979 191 VSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE--------PMKLAV--TSPAVVAH--EGMLYVTGGAIL 256 (400)
Q Consensus 191 ~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--------~l~~~~--~~~~~~~~--~~~iyv~GG~~~ 256 (400)
...+.+ ++...+.|+.+ ..+..||..+++-.... ..+... .-.+++.. ++.++++|+.
T Consensus 101 -V~~v~~sp~g~~l~sgs~d-----g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~-- 172 (902)
T 2oaj_A 101 -ITSIDTDASLDWMLIGLQN-----GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE-- 172 (902)
T ss_dssp -EEEEECCTTCSEEEEEETT-----SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS--
T ss_pred -EEEEEECCCCCEEEEEcCC-----CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeC--
Confidence 111112 45555666654 35888998887643110 011111 11122332 2356677766
Q ss_pred cCCCCcceEEEEeCCCCceeeccCCC---------------CCc-eeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 257 EDGDGIEQVQRYNPKVNQWQDLAPML---------------IPR-SGAAICAL--DSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 257 ~~~~~~~~v~~yd~~~~~W~~~~~~~---------------~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
++ .+ .||..+.+-...-... ..+ .....+.. ++..++.|+. ...+..||.
T Consensus 173 -dg----~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~------Dg~i~lWd~ 240 (902)
T 2oaj_A 173 -YV----TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE------DNSLVFWDA 240 (902)
T ss_dssp -SC----EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET------TCCEEEEET
T ss_pred -CC----cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC------CCeEEEEEC
Confidence 43 67 9998876533211100 000 11122222 6777888876 457999999
Q ss_pred CCCeEEE
Q psy2979 319 AENTWEY 325 (400)
Q Consensus 319 ~~~~W~~ 325 (400)
.+++-..
T Consensus 241 ~~g~~~~ 247 (902)
T 2oaj_A 241 NSGHMIM 247 (902)
T ss_dssp TTCCEEE
T ss_pred CCCcEEE
Confidence 8876543
No 354
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=63.57 E-value=1.5e+02 Score=31.15 Aligned_cols=117 Identities=9% Similarity=0.054 Sum_probs=69.6
Q ss_pred CCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeE
Q psy2979 213 LDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAI 290 (400)
Q Consensus 213 ~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~ 290 (400)
...+..|+...++.+.+..-+..-.-.+++.++|++.+.-|. .+..|+...++.-... ..+. ......
T Consensus 863 ~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~ig~---------~l~vy~l~~~~~L~~~~~~~~~-i~~~~l 932 (1158)
T 3ei3_A 863 QGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINS---------TVRLYEWTTEKELRTECNHYNN-IMALYL 932 (1158)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEEEEEETT---------EEEEEEECTTSCEEEEEEECCC-SCEEEE
T ss_pred ceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEEEcCC---------EEEEEECCCCceEEEEeecccc-EEEEEE
Confidence 345777777666666665433333344667789987776665 6888887665422210 0111 001122
Q ss_pred EEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCE
Q psy2979 291 CALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGK 344 (400)
Q Consensus 291 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 344 (400)
.+.++.|++-.-.. .-.+..|++..++-..++.-..++...++..+++.
T Consensus 933 ~~~~~~I~vgD~~~-----Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~ 981 (1158)
T 3ei3_A 933 KTKGDFILVGDLMR-----SVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD 981 (1158)
T ss_dssp EEETTEEEEEESSB-----CEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT
T ss_pred eccCCEEEEEEhhh-----eEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC
Confidence 34467665544321 33567799999999999887778777676666443
No 355
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=63.54 E-value=87 Score=28.42 Aligned_cols=61 Identities=11% Similarity=-0.003 Sum_probs=35.2
Q ss_pred CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 246 GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
+.+++.|+. ++ .+..||..+..-.. .... .......+.. +++.++.|+. ...+..||+...
T Consensus 162 ~~~las~s~---Dg----~v~iwD~~~~~~~~-~~~~-~~~~v~~v~wspdg~~lasgs~------dg~v~iwd~~~~ 224 (434)
T 2oit_A 162 PSMVAVCLA---DG----SIAVLQVTETVKVC-ATLP-STVAVTSVCWSPKGKQLAVGKQ------NGTVVQYLPTLQ 224 (434)
T ss_dssp TTEEEEEET---TS----CEEEEEESSSEEEE-EEEC-GGGCEEEEEECTTSSCEEEEET------TSCEEEECTTCC
T ss_pred CCEEEEEEC---CC----eEEEEEcCCCccee-eccC-CCCceeEEEEcCCCCEEEEEcC------CCcEEEEccCCc
Confidence 677887777 54 68888887663211 1111 1111222222 6777777775 457899998733
No 356
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=62.00 E-value=65 Score=30.14 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=61.9
Q ss_pred CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCc--eeeeEEE--------ECC-eEEEEcCcCCC-CCCCCe
Q psy2979 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPR--SGAAICA--------LDS-CIYVLGGWHAS-TENTNR 312 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r--~~~~~~~--------~~~-~iyv~GG~~~~-~~~~~~ 312 (400)
+++||++-.. ...+.+.|+.++..+.+.+..... .-..++. .++ .||+..-..+. .. ...
T Consensus 151 ~~~Lyv~~~~-------~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~-~~~ 222 (496)
T 3kya_A 151 KDHLYICYDG-------HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE-SPS 222 (496)
T ss_dssp EEEEEEEEET-------EEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG-EEE
T ss_pred CCEEEEEECC-------CCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc-Cce
Confidence 4789998654 347999999999988876543311 1223333 244 58888644321 11 346
Q ss_pred EEEEECCC-CeEE------EccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECC
Q psy2979 313 VECYHIAE-NTWE------YKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVD 367 (400)
Q Consensus 313 v~~yd~~~-~~W~------~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~ 367 (400)
+..++... +.|. .++. ....+++++. ++.||+.--. ...|++||+.
T Consensus 223 V~~i~r~~~G~~~~~~~~~~v~~---~~~p~giavdp~~g~LYvtd~~------~g~V~r~d~~ 277 (496)
T 3kya_A 223 VYIIKRNADGTFDDRSDIQLIAA---YKQCNGATIHPINGELYFNSYE------KGQVFRLDLV 277 (496)
T ss_dssp EEEEECCTTSCCSTTSCEEEEEE---ESCCCCEEECTTTCCEEEEETT------TTEEEEECHH
T ss_pred EEEEecCCCCceeecccceeecc---CCCceEEEEcCCCCeEEEEECC------CCEEEEEecc
Confidence 88887654 3442 3332 1222344443 5788987643 2479999997
No 357
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=61.55 E-value=1.2e+02 Score=29.13 Aligned_cols=148 Identities=16% Similarity=0.078 Sum_probs=77.5
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEcc-CCC-CcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE-PMK-LAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~l~-~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
+|+..+.++.++ .+..||..+ .+..+. .++ ..+..++++ .-+|++.++||. ++ .+..||..++.
T Consensus 96 dG~~LAs~s~dg-----~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~---DG----tVkIWd~~~~~ 162 (588)
T 2j04_A 96 IDDWMAVLSNNG-----NVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNE---DG----ELQFFSIRKNS 162 (588)
T ss_dssp SSSCEEEEETTS-----CEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSSSCEEEEET---TS----EEEEEECCCCT
T ss_pred CCCEEEEEeCCC-----cEEEEeCCc-eeeeccCCCccccccEEEEEEcCCCCEEEEEcC---CC----EEEEEECCCCc
Confidence 667677766553 477777443 444433 222 122233333 358888888888 55 79999988763
Q ss_pred e--------eecc-CCC-CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe----EEEccCCcCccCcceEEE
Q psy2979 275 W--------QDLA-PML-IPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT----WEYKSPMKEKRYRPGIAV 340 (400)
Q Consensus 275 W--------~~~~-~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~----W~~~~~~~~~~~~~~~~~ 340 (400)
- ..+. ... ....-.+++-..+. ++.++. .+.+..+|..++. |..+.+... ..-.+++-
T Consensus 163 l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~------D~tVrlWd~~~~~~~~~~~tL~~~h~-~~V~svaF 234 (588)
T 2j04_A 163 ENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALS------NNSVFSMTVSASSHQPVSRMIQNASR-RKITDLKI 234 (588)
T ss_dssp TTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEET------TCCEEEECCCSSSSCCCEEEEECCCS-SCCCCEEE
T ss_pred cccccceeeeeeecccccccccEEEEEEcCCc-EEEEeC------CCeEEEEECCCCccccceeeeccccc-CcEEEEEE
Confidence 1 2211 011 11122333344455 666665 4578888887665 334422111 11112222
Q ss_pred ECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 341 IDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 341 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
.+ +..+.++. ..|..||+.+++-...
T Consensus 235 sg-~~LASa~~-------~tIkLWd~~~~~~~~~ 260 (588)
T 2j04_A 235 VD-YKVVLTCP-------GYVHKIDLKNYSISSL 260 (588)
T ss_dssp ET-TEEEEECS-------SEEEEEETTTTEEEEE
T ss_pred EC-CEEEEEeC-------CeEEEEECCCCeEEEE
Confidence 24 44444442 4799999988766444
No 358
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=59.14 E-value=30 Score=30.58 Aligned_cols=57 Identities=2% Similarity=0.004 Sum_probs=29.6
Q ss_pred eEEEEeCCCCc--eeeccC-CCCCce-eeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE
Q psy2979 264 QVQRYNPKVNQ--WQDLAP-MLIPRS-GAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEY 325 (400)
Q Consensus 264 ~v~~yd~~~~~--W~~~~~-~~~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 325 (400)
.++.+|..+.+ |+.-.. +..+.. .......++.+|++.... ...++.||+.++.|..
T Consensus 21 ~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~-----dG~l~a~~~~~G~~~~ 81 (339)
T 2be1_A 21 GLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFG-----DGNIYYFNAHQGLQKL 81 (339)
T ss_dssp CEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCST-----TTEEEEEETTTEEEEE
T ss_pred eEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECC-----CCEEEEEECCCCcEEe
Confidence 57777766554 775432 011100 000011355777765311 4589999998876653
No 359
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=56.39 E-value=1.5e+02 Score=28.76 Aligned_cols=152 Identities=7% Similarity=-0.069 Sum_probs=69.0
Q ss_pred eEEEEeCCCCc---eEEccC---CCCcccccEEE--EeCCEEEEEcCccccCCCCcceEEEEe----CCCCceeeccC--
Q psy2979 215 SVERYDPTKNE---WSYIEP---MKLAVTSPAVV--AHEGMLYVTGGAILEDGDGIEQVQRYN----PKVNQWQDLAP-- 280 (400)
Q Consensus 215 ~v~~yd~~~~~---W~~~~~---l~~~~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~v~~yd----~~~~~W~~~~~-- 280 (400)
++..+|..+++ |..+.. +.......... .-++++++.... .......++.+| +.+.++..+..
T Consensus 225 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~---~~~~~~~l~~~d~~~~~~~g~~~~~~~~~ 301 (719)
T 1z68_A 225 RIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK---RVQNVSVLSICDFREDWQTWDCPKTQEHI 301 (719)
T ss_dssp EEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE---SSTTEEEEEEEEECSSSSSEECCGGGEEE
T ss_pred EEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec---cccCeEEEEEEcccCCCCCCceEEEEecc
Confidence 67788888765 223321 00011111111 226776665322 111145788999 77766654431
Q ss_pred --CCCCcee-----eeEEEECCe-EEEE-cCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCc
Q psy2979 281 --MLIPRSG-----AAICALDSC-IYVL-GGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 281 --~~~~r~~-----~~~~~~~~~-iyv~-GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
-...... .....-+++ |++. ...++ ...++.+|..+++...+.......... ...-++.||..+..
T Consensus 302 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g----~~~l~~~~~~~~~~~~lt~~~~~v~~~-~~~d~~~i~~~~~~ 376 (719)
T 1z68_A 302 EESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG----YKHIHYIKDTVENAIQITSGKWEAINI-FRVTQDSLFYSSNE 376 (719)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS----CEEEEEESSCSTTCEECSCSSSCEEEE-EEECSSEEEEEESC
T ss_pred cccCCceEccccCCccEECCCCCeEEEEEEccCC----ceEEEEEECCCCceEecccCceEEEEE-EEEeCCEEEEEEec
Confidence 1111111 122223454 4443 32221 457999999887766655322111111 11224556655431
Q ss_pred cCCCCCCCeEEEEECCCC--cEEEe
Q psy2979 352 EGWDGYHDSIECYDVDND--SWEIM 374 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~~--~W~~~ 374 (400)
.........+|..+..++ +.+.+
T Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~~~l 401 (719)
T 1z68_A 377 FEEYPGRRNIYRISIGSYPPSKKCV 401 (719)
T ss_dssp GGGCTTCBEEEEEECSSSSCCEEES
T ss_pred CCCCCceEEEEEEeCCCCCCCceec
Confidence 001122356777777554 33444
No 360
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=53.98 E-value=72 Score=28.08 Aligned_cols=102 Identities=8% Similarity=0.025 Sum_probs=50.2
Q ss_pred eEEEEeCCCC--ceEEccC-CCCccc-ccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC-----CCc
Q psy2979 215 SVERYDPTKN--EWSYIEP-MKLAVT-SPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML-----IPR 285 (400)
Q Consensus 215 ~v~~yd~~~~--~W~~~~~-l~~~~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-----~~r 285 (400)
.++.+|..++ .|+.-.. +..... .......++.+|++.... +| .++.+|+.+..|.---.++ .|.
T Consensus 21 ~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~--dG----~l~a~~~~~G~~~~~~~~~~lv~~SP~ 94 (339)
T 2be1_A 21 GLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFG--DG----NIYYFNAHQGLQKLPLSIRQLVSTSPL 94 (339)
T ss_dssp CEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCST--TT----EEEEEETTTEEEEEEEEHHHHHTTCSE
T ss_pred eEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECC--CC----EEEEEECCCCcEEeeeccccceecccc
Confidence 4777777766 4876433 111110 000011356777775321 33 6889998776554211111 111
Q ss_pred eeeeEEEE-------CCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEEccC
Q psy2979 286 SGAAICAL-------DSCIYVLGGWHASTENTNRVECYHIAENT--WEYKSP 328 (400)
Q Consensus 286 ~~~~~~~~-------~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~ 328 (400)
...+.-++ .+...++|.. ...++.+|..+++ |+.-..
T Consensus 95 ~~~~~pvv~~~~~~~~~g~Vy~Gs~------~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 95 HLKTNIVVNDSGKIVEDEKVYTGSM------RTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp EEECC----------CCEEEEECEE------EEEEEEEETTTCCEEEEESTT
T ss_pred ccCCCceeecccccccCCEEEEEec------CCEEEEEECCCCcEEEEEecC
Confidence 11111122 4444455554 5678999988885 776443
No 361
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=53.39 E-value=1.5e+02 Score=29.22 Aligned_cols=149 Identities=7% Similarity=0.033 Sum_probs=79.2
Q ss_pred CEEEEEECCC--CCeEEccCCCCcceeeeEEEECCEEEEEcccCC-----CCCCCeEEEEeCCC--------CceEE-cc
Q psy2979 167 DIVYVAASMH--KILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDG-----SCRLDSVERYDPTK--------NEWSY-IE 230 (400)
Q Consensus 167 ~~~~~yd~~~--~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~v~~yd~~~--------~~W~~-~~ 230 (400)
+.++..|... ..|.++. .|+...-....++.+|+....+- ......+...|..+ ..|+. ++
T Consensus 269 ~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (711)
T 4hvt_A 269 YDNYILDTKYKNLKLQKIN---MPSDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFT 345 (711)
T ss_dssp EEEEEEECSSSSCEEEECC---SCTTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEEC
T ss_pred eeEEEEcCCCCCCcceEee---cCCcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEEC
Confidence 4455555442 4566652 22222224556889999765431 11345677777654 46886 44
Q ss_pred CCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeec--cCCCCCceeeeEEE--E-CCeEEEE-cCcC
Q psy2979 231 PMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL--APMLIPRSGAAICA--L-DSCIYVL-GGWH 304 (400)
Q Consensus 231 ~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~~~r~~~~~~~--~-~~~iyv~-GG~~ 304 (400)
+-+ .+.--.+...++.+++..-. ++ ...+..+|+.+..|... -++|..-. ..... . ++.+++. .+..
T Consensus 346 ~~~-~~~l~~~~~~~~~l~~~~~~---~~--~~~l~~~~~~~g~~~~~~~i~lp~~~~-~~~~~~~~~~~~~~~~~ss~~ 418 (711)
T 4hvt_A 346 PTA-NEVFNFISTTKDRVFLATYD---NV--VAKVVTFTLENEQWTKPVVLKLPYQNA-IFGMSSYEEEEEALITIENSI 418 (711)
T ss_dssp CCT-TEEEEEEEECSSCEEEEEEE---TT--EEEEEEECEETTEECCCEEECCCSTTC-EEEEECCTTCSCEEEEEECSS
T ss_pred CCC-CCeEEEEEEECCEEEEEEEE---CC--EEEEEEEECCCCceEEEeccCCCCCeE-EEEEeecCcCCEEEEEEecCC
Confidence 322 22222444556777776433 33 45789999888877432 23443211 22222 2 2344433 3332
Q ss_pred CCCCCCCeEEEEECCCCeEEEccCCc
Q psy2979 305 ASTENTNRVECYHIAENTWEYKSPMK 330 (400)
Q Consensus 305 ~~~~~~~~v~~yd~~~~~W~~~~~~~ 330 (400)
. ...++.||.. ++++.+...+
T Consensus 419 ~----P~~~~~~d~~-~~~~~l~~~~ 439 (711)
T 4hvt_A 419 V----PPTIYLWVKT-HELKIIRKAL 439 (711)
T ss_dssp S----CCEEEEECTT-SCEEEEECCS
T ss_pred C----CCEEEEEeCC-CcEEEEecCC
Confidence 2 4689999987 7777765443
No 362
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=52.43 E-value=1e+02 Score=25.76 Aligned_cols=191 Identities=10% Similarity=0.090 Sum_probs=99.0
Q ss_pred eEEEE--CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEEC-CEEEEEcccCCCCCCCeEEEEeCCCCc-
Q psy2979 151 GLVVS--GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLD-GFVYAVGGWDGSCRLDSVERYDPTKNE- 225 (400)
Q Consensus 151 ~~~~~--~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~- 225 (400)
+++.. ++. +|++ .....++.+|+....+..++ +.......+++..+ +.+++.-- ....+..|+...+.
T Consensus 31 Gla~~~~~~~-L~aV~d~~~~I~~ld~~g~v~~~i~-l~g~~D~EGIa~~~~g~~~vs~E-----~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 31 SLTWSAQSNT-LFSTINKPAAIVEMTTNGDLIRTIP-LDFVKDLETIEYIGDNQFVISDE-----RDYAIYVISLTPNSE 103 (255)
T ss_dssp EEEEETTTTE-EEEEEETTEEEEEEETTCCEEEEEE-CSSCSSEEEEEECSTTEEEEEET-----TTTEEEEEEECTTCC
T ss_pred eeEEeCCCCE-EEEEECCCCeEEEEeCCCCEEEEEe-cCCCCChHHeEEeCCCEEEEEEC-----CCCcEEEEEcCCCCe
Confidence 44444 345 8887 55667999999855555553 22224445555554 45444421 12456666654443
Q ss_pred -eE--Ecc-CCC--Cccccc-EEEEe--CCEEEEEcCccccCCCCcceEEEEeC--CCCceeeccC-----CCCCceeee
Q psy2979 226 -WS--YIE-PMK--LAVTSP-AVVAH--EGMLYVTGGAILEDGDGIEQVQRYNP--KVNQWQDLAP-----MLIPRSGAA 289 (400)
Q Consensus 226 -W~--~~~-~l~--~~~~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~--~~~~W~~~~~-----~~~~r~~~~ 289 (400)
|. ... ++. ....+. +++.. ++.+|++... + ...++.|+- .+..-+.... ....+-..+
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~---~---p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~ 177 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK---N---PIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG 177 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES---S---SEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc---C---CceEEEEcccccCCceeeecchhhccccccCCcee
Confidence 41 111 221 122333 44442 5589997655 2 236888872 2211121100 011122234
Q ss_pred EEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCc-------cCcceEEEE--CCEEEEEcCccCCCCCC
Q psy2979 290 ICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEK-------RYRPGIAVI--DGKIYVLGGEEGWDGYH 358 (400)
Q Consensus 290 ~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-------~~~~~~~~~--~~~lyv~GG~~~~~~~~ 358 (400)
++.. .+++|++... ...+..+|+..+.=..+ +++.. ...+-.+++ +|.|||+.--
T Consensus 178 l~~dp~tg~lliLS~~------s~~L~~~d~~g~~~~~~-~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~------- 243 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHE------SRALQEVTLVGEVIGEM-SLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP------- 243 (255)
T ss_dssp EEEETTTTEEEEEETT------TTEEEEECTTCCEEEEE-ECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT-------
T ss_pred EEEcCCCCeEEEEECC------CCeEEEEcCCCCEEEEE-EcCCccCCcccccCCCCeeEECCCCCEEEEcCC-------
Confidence 4443 6789999876 67899999886633322 22211 122334444 6889999532
Q ss_pred CeEEEEECCC
Q psy2979 359 DSIECYDVDN 368 (400)
Q Consensus 359 ~~v~~yd~~~ 368 (400)
+-+|+|.+..
T Consensus 244 n~~y~f~~~~ 253 (255)
T 3qqz_A 244 NRFYRFTPQS 253 (255)
T ss_dssp TEEEEEEC--
T ss_pred ceEEEEEecC
Confidence 5788987643
No 363
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=51.72 E-value=1.4e+02 Score=27.09 Aligned_cols=126 Identities=15% Similarity=0.173 Sum_probs=75.7
Q ss_pred CCceEE--ccCCCCcccccEEEEeCCEEEEEcCccccCCCC-cceE-EEEeC-----CCCc-eeecc-CCCCCceeeeEE
Q psy2979 223 KNEWSY--IEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQV-QRYNP-----KVNQ-WQDLA-PMLIPRSGAAIC 291 (400)
Q Consensus 223 ~~~W~~--~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v-~~yd~-----~~~~-W~~~~-~~~~~r~~~~~~ 291 (400)
.+.|+. ++.+|..-.-|+.+.+++.=|++|=. +|+. ..++ ..|-+ .... =..++ ......+..++-
T Consensus 269 ~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyH---nGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvk 345 (670)
T 3ju4_A 269 KSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYH---QGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIK 345 (670)
T ss_dssp TSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEE---ECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEE
T ss_pred cCCceecccccccceeeeeeeeEecCCceEEEec---cCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhh
Confidence 345644 45566666778899999888888744 4433 2222 12211 1111 12222 223334556777
Q ss_pred EECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC-CcCccCcceEEEECCEEEEEcCc
Q psy2979 292 ALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP-MKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 292 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
.+++.+|+.--.......-.++.+-+.....|+.+.- -.......-.+..++.||+||-+
T Consensus 346 yYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgsE 406 (670)
T 3ju4_A 346 YYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSE 406 (670)
T ss_dssp EETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEEC
T ss_pred hhCCEEEEEecCcCCCCCcceeeeecccCCchhheeccccccccCCCcceeCCEEEEEecc
Confidence 7899999986433332214577777777888998752 33445556677889999999855
No 364
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=51.70 E-value=1.9e+02 Score=28.72 Aligned_cols=234 Identities=12% Similarity=0.120 Sum_probs=120.3
Q ss_pred EEEEEcCCCceEEccCCcc-----cceeeeEEEEC--CeEEEEEee--c----CEEEEEECCCCCeEEccCC-CC-----
Q psy2979 127 VEGFCVKTKVWKTLSCLPF-----AISKHGLVVSG--RNTIYCLDI--V----DIVYVAASMHKILHSLGSL-KF----- 187 (400)
Q Consensus 127 ~~~yd~~~~~w~~~~~~~~-----~~~~~~~~~~~--~~~iyv~~~--~----~~~~~yd~~~~~w~~~~~~-~~----- 187 (400)
++.-+-.-..|.++...+. ....+++++.. ...+|+... . ..++.-+-.-.+|+.+... +.
T Consensus 39 v~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~ 118 (789)
T 1sqj_A 39 AYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDM 118 (789)
T ss_dssp EEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTST
T ss_pred EEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCC
Confidence 4555555667998765321 22334555432 122777632 2 4555555556679987532 11
Q ss_pred cc-eeeeEEEE---CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC---cccccEEEEe----CCEEEEEcCccc
Q psy2979 188 DF-DVSGIAML---DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL---AVTSPAVVAH----EGMLYVTGGAIL 256 (400)
Q Consensus 188 ~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~---~~~~~~~~~~----~~~iyv~GG~~~ 256 (400)
.| ....+++. .+.+|+. ... ..+++=+-.-.+|+.+..+|. .-.......+ .+.||+....
T Consensus 119 ~~~~~~~iav~p~~~~~v~~g-~~~-----~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~-- 190 (789)
T 1sqj_A 119 GRNNGERLAVNPFNSNEVWMG-TRT-----EGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA-- 190 (789)
T ss_dssp TTTSCCCEEEETTEEEEEEEE-CSS-----SCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS--
T ss_pred CccceeEEEEcCCCCCEEEEE-ecc-----CCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC--
Confidence 12 12334443 2466663 311 235544444568999876541 1122222332 2467776532
Q ss_pred cCCCCcceEEEEeCCCCceeeccCCCCCc----------------eeeeEEEE--CCeEEEEcCcCC---CCCCCCeEEE
Q psy2979 257 EDGDGIEQVQRYNPKVNQWQDLAPMLIPR----------------SGAAICAL--DSCIYVLGGWHA---STENTNRVEC 315 (400)
Q Consensus 257 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r----------------~~~~~~~~--~~~iyv~GG~~~---~~~~~~~v~~ 315 (400)
. ..+++=.-...+|+.+..++... ..+.++.. ++.||+..+... ... ...+++
T Consensus 191 -~----~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~-~g~l~~ 264 (789)
T 1sqj_A 191 -P----QGMYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVT-FGEVWR 264 (789)
T ss_dssp -T----TCEEEESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSSCCC-CCCEEE
T ss_pred -C----CeEEEEcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCCCCC-CceEEE
Confidence 1 13554433466899987554321 01333332 788998842210 011 457888
Q ss_pred EECCCCeEEEccCCcCc---------cC---cceEEEE----CCEEEEEcCccCC-CCCCCeEEEEECCCCcEEEec
Q psy2979 316 YHIAENTWEYKSPMKEK---------RY---RPGIAVI----DGKIYVLGGEEGW-DGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 316 yd~~~~~W~~~~~~~~~---------~~---~~~~~~~----~~~lyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~ 375 (400)
.+-...+|+.+.+.|.. .. ....+++ .+.||+.+.. .. ......+++=+-...+|+.+.
T Consensus 265 S~DgG~tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~-~~~~~~~~~l~~S~DgG~tW~~~~ 340 (789)
T 1sqj_A 265 QNRTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLD-RDPGPALDSIYLSTDAGATWKDVT 340 (789)
T ss_dssp EETTTCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEEC-CCSCSSCCCEEEESSTTSSEEEHH
T ss_pred EeCCCCceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEec-cCCCcccccEEEecCCCCCceeCc
Confidence 88888999999865431 12 2223333 2568887653 11 001134555555567899886
No 365
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=51.34 E-value=1.6e+02 Score=27.54 Aligned_cols=112 Identities=17% Similarity=0.174 Sum_probs=63.2
Q ss_pred eeEEEEC--CeEEEEE-eecCEEEEEECCCCCeEEccCCCCcc--eeeeEEE--------EC-CEEEEEcccCCC-CCCC
Q psy2979 150 HGLVVSG--RNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDF--DVSGIAM--------LD-GFVYAVGGWDGS-CRLD 214 (400)
Q Consensus 150 ~~~~~~~--~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r--~~~~~~~--------~~-~~iyv~GG~~~~-~~~~ 214 (400)
..+++-. +..||+. .....++..|+.++....+....... .-..++. .+ +.||+.--..+. ....
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~ 221 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP 221 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence 4455552 2338988 33467899999998888776543211 1222333 23 458887432211 1234
Q ss_pred eEEEEeCCC-CceE------EccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCC
Q psy2979 215 SVERYDPTK-NEWS------YIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPK 271 (400)
Q Consensus 215 ~v~~yd~~~-~~W~------~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~ 271 (400)
.+..++... ++|. .++. ....++++.. ++.||+.--. ...+++||+.
T Consensus 222 ~V~~i~r~~~G~~~~~~~~~~v~~---~~~p~giavdp~~g~LYvtd~~-------~g~V~r~d~~ 277 (496)
T 3kya_A 222 SVYIIKRNADGTFDDRSDIQLIAA---YKQCNGATIHPINGELYFNSYE-------KGQVFRLDLV 277 (496)
T ss_dssp EEEEEECCTTSCCSTTSCEEEEEE---ESCCCCEEECTTTCCEEEEETT-------TTEEEEECHH
T ss_pred eEEEEecCCCCceeecccceeecc---CCCceEEEEcCCCCeEEEEECC-------CCEEEEEecc
Confidence 577887655 3552 3332 2233445554 5789987654 3479999997
No 366
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=50.45 E-value=1.4e+02 Score=26.76 Aligned_cols=71 Identities=14% Similarity=0.052 Sum_probs=42.1
Q ss_pred CCeEEEEcCc--CCC-CCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE-CC--EEEEEcCccCCCCCCCeEEEEECC
Q psy2979 294 DSCIYVLGGW--HAS-TENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-DG--KIYVLGGEEGWDGYHDSIECYDVD 367 (400)
Q Consensus 294 ~~~iyv~GG~--~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~--~lyv~GG~~~~~~~~~~v~~yd~~ 367 (400)
++++|+.-+. .+. ....++|+.+|+.+.+-.. ..+.+....++.+- ++ .+|+..+. .++|.+||..
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~--~i~vg~~~~~lavs~D~~~~ly~tn~~------~~~VsViD~~ 362 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA--KFEMGHEIDSINVSQDEKPLLYALSTG------DKTLYIHDAE 362 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE--EEEEEEEECEEEECSSSSCEEEEEETT------TTEEEEEETT
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEE--EEECCCCcceEEECCCCCeEEEEEcCC------CCeEEEEECC
Confidence 6799997431 111 1114789999999887533 33333323333332 54 47776543 3689999999
Q ss_pred CCcEE
Q psy2979 368 NDSWE 372 (400)
Q Consensus 368 ~~~W~ 372 (400)
+++-.
T Consensus 363 t~k~~ 367 (386)
T 3sjl_D 363 SGEEL 367 (386)
T ss_dssp TCCEE
T ss_pred CCcEE
Confidence 88633
No 367
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=49.12 E-value=1.5e+02 Score=26.82 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=74.0
Q ss_pred CCeEE--ccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEE-EeCC-----CC-ceEEcc-CCCCcccccEEEEeCC
Q psy2979 177 KILHS--LGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVER-YDPT-----KN-EWSYIE-PMKLAVTSPAVVAHEG 246 (400)
Q Consensus 177 ~~w~~--~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~-yd~~-----~~-~W~~~~-~l~~~~~~~~~~~~~~ 246 (400)
+.|+. ++..|..-.-|+.+.+++.-|++|=..++...+.+-. |-+. .. .=..++ .....-...++-..++
T Consensus 270 spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyYdg 349 (670)
T 3ju4_A 270 SPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDG 349 (670)
T ss_dssp SCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEEEETT
T ss_pred CCceecccccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCC
Confidence 44653 4455666678899999988889987776654444432 2111 11 112222 1223334445567899
Q ss_pred EEEEEcCccccCCCC-cceEEEEeCCCCceeeccC-CCCCceeeeEEEECCeEEEEcC
Q psy2979 247 MLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAP-MLIPRSGAAICALDSCIYVLGG 302 (400)
Q Consensus 247 ~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~~~~~iyv~GG 302 (400)
.+|++--.. .+.. -+++.+-+.....|+.+.- -..-....-.+..++.||++|-
T Consensus 350 vLyLtTRgt--~~~~~GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgs 405 (670)
T 3ju4_A 350 VLYLITRGT--RGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGS 405 (670)
T ss_dssp EEEEEEEES--CTTSCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEE
T ss_pred EEEEEecCc--CCCCCcceeeeecccCCchhheeccccccccCCCcceeCCEEEEEec
Confidence 999985332 2222 3467777777888998852 2223334445677999999985
No 368
>2b4w_A Hypothetical protein, conserved; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.98A {Leishmania major} SCOP: b.67.2.5
Probab=45.65 E-value=94 Score=26.42 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=44.0
Q ss_pred EEECCeEEEEcCcCCCC-CCCCeEEEEEC-CCCeEEEccCCcCccCcceEEEECCEEEEEcCc
Q psy2979 291 CALDSCIYVLGGWHAST-ENTNRVECYHI-AENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 291 ~~~~~~iyv~GG~~~~~-~~~~~v~~yd~-~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
...+|+.+|.|-..... ...+.|..|.- ..+.|+.++.+.....-+-.+-++|++. +||.
T Consensus 37 F~~~Gk~~I~GRVE~Rd~se~S~V~fFeet~~d~w~~v~~~~~~LqDPF~t~I~gEli-~GGv 98 (315)
T 2b4w_A 37 FSYKGKTHIYGRVEKRDIWAASHVRLFEETGKDEFTAVPELSWELEDPYIAKINNEMI-FGGT 98 (315)
T ss_dssp EEETTEEEEEEEEECTTCSSCCEEEEEEEEETTEEEECTTCCBSCEEEEEEEETTEEE-EEEE
T ss_pred eeECCEEEEEeeeecCCCccccEEEEEEEcCCCceEECCCCEEEecCccEEEECCEEE-eeeE
Confidence 45688999998765544 22578888876 8899999988445666677888899974 5665
No 369
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=42.64 E-value=1.5e+02 Score=31.01 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=79.8
Q ss_pred cccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCcee-ecc----CCCCCceeeeEEEE---CCeEEEEcCcCCCC
Q psy2979 237 TSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQ-DLA----PMLIPRSGAAICAL---DSCIYVLGGWHAST 307 (400)
Q Consensus 237 ~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~-~~~----~~~~~r~~~~~~~~---~~~iyv~GG~~~~~ 307 (400)
.++++...++.+ ++|.- .... ...++.|.+....|. ... .+.....+++++.- ++..+++|.- ...
T Consensus 335 ~GfSa~~t~d~~-~~Gap---G~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP-~~~ 409 (1095)
T 3k6s_A 335 EGFSAVFTPDGP-VLGAV---GSFTWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAP-RYQ 409 (1095)
T ss_dssp TTSSEECCTTCC-EEEES---CSTTTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEET-TGG
T ss_pred ccccceecCCcc-eEccc---ccCCccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEcc-ccc
Confidence 344455554444 67764 3223 557888887655433 222 12233345555442 2345666632 222
Q ss_pred CCCCeEEEEECCCCeEEEccCCc----CccCcceEEEEC------CEEEEEcCcc-CCCCCCCeEEEEECCC--CcEEEe
Q psy2979 308 ENTNRVECYHIAENTWEYKSPMK----EKRYRPGIAVID------GKIYVLGGEE-GWDGYHDSIECYDVDN--DSWEIM 374 (400)
Q Consensus 308 ~~~~~v~~yd~~~~~W~~~~~~~----~~~~~~~~~~~~------~~lyv~GG~~-~~~~~~~~v~~yd~~~--~~W~~~ 374 (400)
. ...|+.|....+.|+....+. ....++++++.| ..++++|.-. ........|++|.-.. ..|...
T Consensus 410 ~-~G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~ 488 (1095)
T 3k6s_A 410 H-TGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCD 488 (1095)
T ss_dssp G-TCEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCCCSC
T ss_pred c-cceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcceeee
Confidence 2 568999988877787654322 234556666642 3477777431 1113346788886544 358754
Q ss_pred cCC------CCCCCceeeEEEc
Q psy2979 375 SHL------PSARSWLGCVPLQ 390 (400)
Q Consensus 375 ~~~------~~~r~~~~~~~~~ 390 (400)
..+ +..|++.+++.++
T Consensus 489 ~~l~g~~~~~~~~FG~sva~~g 510 (1095)
T 3k6s_A 489 AVLYGEQGHPWGRFGAALTVLG 510 (1095)
T ss_dssp SSCCCCCSCSSCCBTSCEEEEE
T ss_pred EEeecccCCccccCccceEeec
Confidence 333 3467788887763
No 370
>2b4w_A Hypothetical protein, conserved; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.98A {Leishmania major} SCOP: b.67.2.5
Probab=40.08 E-value=96 Score=26.37 Aligned_cols=57 Identities=14% Similarity=0.262 Sum_probs=43.5
Q ss_pred ECCEEEEEcccCCCC--CCCeEEEEeC-CCCceEEccCCCCcccccEEEEeCCEEEEEcCc
Q psy2979 197 LDGFVYAVGGWDGSC--RLDSVERYDP-TKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGA 254 (400)
Q Consensus 197 ~~~~iyv~GG~~~~~--~~~~v~~yd~-~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~ 254 (400)
.+++.++.|-..... ..+.|..|.- ..++|+.++.+......+-.+-++|.+. +||.
T Consensus 39 ~~Gk~~I~GRVE~Rd~se~S~V~fFeet~~d~w~~v~~~~~~LqDPF~t~I~gEli-~GGv 98 (315)
T 2b4w_A 39 YKGKTHIYGRVEKRDIWAASHVRLFEETGKDEFTAVPELSWELEDPYIAKINNEMI-FGGT 98 (315)
T ss_dssp ETTEEEEEEEEECTTCSSCCEEEEEEEEETTEEEECTTCCBSCEEEEEEEETTEEE-EEEE
T ss_pred ECCEEEEEeeeecCCCccccEEEEEEEcCCCceEECCCCEEEecCccEEEECCEEE-eeeE
Confidence 478888888765444 3467777765 7889999988557788888899999984 6776
No 371
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=38.81 E-value=2.3e+02 Score=25.79 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=46.2
Q ss_pred CCeEEEEcCcCC--C--CCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE-C-C-EEEEEcCccCCCCCCCeEEEEEC
Q psy2979 294 DSCIYVLGGWHA--S--TENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-D-G-KIYVLGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 294 ~~~iyv~GG~~~--~--~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~-~-~lyv~GG~~~~~~~~~~v~~yd~ 366 (400)
++++|+.-.... . .. .+++..+|..+.+ .+...+.+....++..- + . .+|+.... .+.|.+||.
T Consensus 330 g~rlyVa~~~~~~gthk~~-s~~VsVID~~T~k--vv~~I~vg~~P~gia~spDg~~~lyv~n~~------s~~VsVID~ 400 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAA-SRFVVVLNAETGE--RINKIELGHEIDSINVSQDAEPLLYALSAG------TQTLHIYDA 400 (426)
T ss_dssp GTEEEEEEEECCTTCTTSC-EEEEEEEETTTCC--EEEEEEEEEEECEEEECCSSSCEEEEEETT------TTEEEEEET
T ss_pred CCEEEEEecccccccccCC-CCEEEEEECCCCe--EEEEEECCCCcCeEEEccCCCEEEEEEcCC------CCeEEEEEC
Confidence 578998743211 0 12 4689999988775 33344444433344333 3 4 57776643 368999998
Q ss_pred CCCcEEEecCC-CCCCCce
Q psy2979 367 DNDSWEIMSHL-PSARSWL 384 (400)
Q Consensus 367 ~~~~W~~~~~~-~~~r~~~ 384 (400)
.+. +.+..+ +.++.-+
T Consensus 401 ~t~--kvv~tI~~vG~~P~ 417 (426)
T 3c75_H 401 ATG--EELRSVDQLGRGPQ 417 (426)
T ss_dssp TTC--CEEEEECCCSSSCC
T ss_pred CCC--CEEEEecCCCCCCc
Confidence 765 455554 4444444
No 372
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=35.70 E-value=46 Score=23.98 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=45.9
Q ss_pred eEEEECCeEEehhhHHHhhcCcc-ccccc-----------eeecCCCCH---HHHHHHhhhcccccCchhH-HHHHHHHH
Q psy2979 20 VTLCVDGSKFPAHRVVLAASSPY-FKVLE-----------TIRLPQLSP---YFLHDCVEQCAIIKNNPQC-AQLVEEAK 83 (400)
Q Consensus 20 v~l~~~~~~~~~hr~vLaa~s~y-f~~m~-----------~vrl~~l~~---~~l~~~i~~~~l~~~~~~c-~~~l~~a~ 83 (400)
|+|.|+|..|.--+..|.....- +..|. .+-| .=++ ..+++++.++.|......| ..++++|.
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea~ 85 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELE 85 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHHH
Confidence 67999999999999999876432 22331 1111 1222 2678899999886544333 56888887
Q ss_pred hcCCCcc
Q psy2979 84 LFHLLPD 90 (400)
Q Consensus 84 ~~~~~~~ 90 (400)
.|.+.+.
T Consensus 86 fy~i~~~ 92 (115)
T 3kvt_A 86 FWGLDSN 92 (115)
T ss_dssp HHTCCGG
T ss_pred HhCCChH
Confidence 7776654
No 373
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=33.72 E-value=20 Score=26.24 Aligned_cols=22 Identities=14% Similarity=0.396 Sum_probs=18.6
Q ss_pred ccc--cccceeecCCCCHHHHHHH
Q psy2979 41 PYF--KVLETIRLPQLSPYFLHDC 62 (400)
Q Consensus 41 ~yf--~~m~~vrl~~l~~~~l~~~ 62 (400)
-|| ++|.++|+++++.+.+.++
T Consensus 9 ~~~~~~~MPhlr~rgi~~e~v~~l 32 (122)
T 1u9d_A 9 LYFSSNAMPHLRFRAVEAHIVESL 32 (122)
T ss_dssp TTBTTCCCCEEEEESSCHHHHHHH
T ss_pred eeeccCCCceEEECCCCHHHHHHH
Confidence 377 5899999999999988763
No 374
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=30.71 E-value=4e+02 Score=26.26 Aligned_cols=231 Identities=12% Similarity=0.100 Sum_probs=118.1
Q ss_pred EEEEEcCCCceEEccC-C-----c----ccceeeeEEEE---CCeEEEEEee-------cCEEEEEECCCCCeEEccCC-
Q psy2979 127 VEGFCVKTKVWKTLSC-L-----P----FAISKHGLVVS---GRNTIYCLDI-------VDIVYVAASMHKILHSLGSL- 185 (400)
Q Consensus 127 ~~~yd~~~~~w~~~~~-~-----~----~~~~~~~~~~~---~~~~iyv~~~-------~~~~~~yd~~~~~w~~~~~~- 185 (400)
++.-+-.-.+|.++.. + + .....+++++. .+. +|+... ...+++-+-.-.+|+++...
T Consensus 45 v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~-~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~ 123 (763)
T 3a0f_A 45 TYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDR-LYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPV 123 (763)
T ss_dssp EEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTC-EEEEECSCTTTCSCCEEEEESSTTSSCEEEECSS
T ss_pred EEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCE-EEEEecccccCCCCceEEEECCCCCCceeccCCc
Confidence 4455555567998765 3 2 11122333332 245 777632 24455544455689987632
Q ss_pred C-----Cccee-eeEEEE---CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc---cccEEEEe----CCEEE
Q psy2979 186 K-----FDFDV-SGIAML---DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV---TSPAVVAH----EGMLY 249 (400)
Q Consensus 186 ~-----~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~---~~~~~~~~----~~~iy 249 (400)
+ ..|.. ..+++. .+.+|+.+. ...+++=+-.-.+|+.+..++... .......+ .+.+|
T Consensus 124 ~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~------~~~l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~ 197 (763)
T 3a0f_A 124 PMGANDMGRNGGERLAVNPHWTDELWFGSR------TQGLWRSTDRAQTWSRMNQLPDSSTYGIGIISVIFDPKNVGTAY 197 (763)
T ss_dssp CCCTTSTTTTSBCCEEECTTSTTCEEEECS------SSCEEEESSTTSSCEECTTSCCCSCTTTCEEEEEECSSSTTCEE
T ss_pred ccCccccCccccceEEECCCCCCEEEEEeC------CCcEEEECCCCcCccccccCcccCCCccceEEEEECCCCCCEEE
Confidence 1 11211 233433 357787542 123554344456899998776432 11222222 34687
Q ss_pred EEcCccccCCCCcceEEEEeCCCCceeeccCCCC--------------------CceeeeEEEE-CCeEEEEcCcC--CC
Q psy2979 250 VTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI--------------------PRSGAAICAL-DSCIYVLGGWH--AS 306 (400)
Q Consensus 250 v~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~--------------------~r~~~~~~~~-~~~iyv~GG~~--~~ 306 (400)
+.... .+ .+++=+-...+|+.+...+. +...+.++.. ++.+|+..... ..
T Consensus 198 ~~~~~---~g----~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 270 (763)
T 3a0f_A 198 VASHA---VG----GLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGPW 270 (763)
T ss_dssp EEESS---TT----CEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEESSCSSS
T ss_pred EEEeC---CC----eEEEECCCCCCccccCCCccccccccccccccccccccCCCCcceeEEECCCCcEEEEeccCCCCC
Confidence 76443 11 24444444668999875552 2233444333 67888874211 00
Q ss_pred CCCCCeEEEEECCCCeEEEccCCcCccC--------------cceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 307 TENTNRVECYHIAENTWEYKSPMKEKRY--------------RPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 307 ~~~~~~v~~yd~~~~~W~~~~~~~~~~~--------------~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
......+++.+-...+|+.+.+.|..-. .+..+++ .+.||+.+.. .. ....+++=.-...+
T Consensus 271 ~~~~g~v~rS~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~gg~~~i~v~~~~~v~~~~~~-~~--~~~~l~~S~DgG~t 347 (763)
T 3a0f_A 271 GVLYGEVWSYDPTNGNWKHITPSREGANTYPAPTGNKKVVPGGWNGISVGNGDTVVVSTLD-AN--GEDSVYLSRDAGNS 347 (763)
T ss_dssp CCCCEEEEEEETTTTEEEECCTTSSSSCEESCCCCCTTSCCCEEEEEEECSTBCEEEEEES-CT--TSCCEEEESBTTSS
T ss_pred CCcceeEEEEeCCCCceEECCCCCCCCccccccccccccccCCceeEEEcCCCeEEEEecC-CC--CCCCEEEECCCCCC
Confidence 0114579999988999999876553111 2223344 3567776642 11 11234433333568
Q ss_pred EEEe
Q psy2979 371 WEIM 374 (400)
Q Consensus 371 W~~~ 374 (400)
|+.+
T Consensus 348 W~~~ 351 (763)
T 3a0f_A 348 WKDL 351 (763)
T ss_dssp EEEH
T ss_pred cccC
Confidence 9987
No 375
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=30.19 E-value=2.9e+02 Score=24.42 Aligned_cols=115 Identities=13% Similarity=0.172 Sum_probs=60.3
Q ss_pred ceEEEE--eCCCCceeeccCC--C--CC-ceeeeEEEE----CCeEEEEcCcCCCCCCCCeEEEEEC---CCCeE--EEc
Q psy2979 263 EQVQRY--NPKVNQWQDLAPM--L--IP-RSGAAICAL----DSCIYVLGGWHASTENTNRVECYHI---AENTW--EYK 326 (400)
Q Consensus 263 ~~v~~y--d~~~~~W~~~~~~--~--~~-r~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~---~~~~W--~~~ 326 (400)
+++..| ||.+.+++.+... | .. +.-++++.+ .+++|++-... ...++.|+. ..++. +.+
T Consensus 99 n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k-----~G~~~q~~l~~~~~g~~~~~lV 173 (355)
T 3amr_A 99 NTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK-----EGEFEQYELKADKNGYISGKKV 173 (355)
T ss_dssp CEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS-----SSEEEEEEEEECTTSCEEEEEE
T ss_pred CeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC-----CCeEEEEEEEeCCCCcccceEE
Confidence 355555 8899999999653 4 33 555666664 35555443221 235666655 33323 233
Q ss_pred cCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEE--CCCC-cEEEecCCCCC---CCceeeEEE
Q psy2979 327 SPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYD--VDND-SWEIMSHLPSA---RSWLGCVPL 389 (400)
Q Consensus 327 ~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd--~~~~-~W~~~~~~~~~---r~~~~~~~~ 389 (400)
..++.+-..-+|++- .++||+---. ..||+|| |++. +-+.+...+.+ ..-.+++++
T Consensus 174 R~f~lgsq~EgcvvDd~~g~Lyv~eEd-------~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~ 237 (355)
T 3amr_A 174 RAFKMNSQTEGMAADDEYGRLYIAEED-------EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIY 237 (355)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETT-------TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEE
T ss_pred EEecCCCCcceEEEcCCCCeEEEeccc-------ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEE
Confidence 333333222334443 4788885321 3599999 4441 23444433333 234667765
No 376
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=30.06 E-value=2.9e+02 Score=24.41 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=47.2
Q ss_pred CeEEEE--ECCCCeEEEccCC--c--Cc-cCcceEEEE----CCEEEEEcCccCCCCCCCeEEEEEC---CCCcE--EEe
Q psy2979 311 NRVECY--HIAENTWEYKSPM--K--EK-RYRPGIAVI----DGKIYVLGGEEGWDGYHDSIECYDV---DNDSW--EIM 374 (400)
Q Consensus 311 ~~v~~y--d~~~~~W~~~~~~--~--~~-~~~~~~~~~----~~~lyv~GG~~~~~~~~~~v~~yd~---~~~~W--~~~ 374 (400)
+++..| ||.++.+..++.. | .. +..+++|.+ .+++|++-.. .. ..++.|+. ..++. +.+
T Consensus 99 n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~-k~----G~~~q~~l~~~~~g~~~~~lV 173 (355)
T 3amr_A 99 NTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG-KE----GEFEQYELKADKNGYISGKKV 173 (355)
T ss_dssp CEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC-SS----SEEEEEEEEECTTSCEEEEEE
T ss_pred CeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC-CC----CeEEEEEEEeCCCCcccceEE
Confidence 355555 8899999999754 5 33 667777775 3555555322 11 25555555 33323 444
Q ss_pred cCCCCCCCceeeEEEccccccccc
Q psy2979 375 SHLPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 375 ~~~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
.+++.+-.--+|++-+....+|++
T Consensus 174 R~f~lgsq~EgcvvDd~~g~Lyv~ 197 (355)
T 3amr_A 174 RAFKMNSQTEGMAADDEYGRLYIA 197 (355)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEE
T ss_pred EEecCCCCcceEEEcCCCCeEEEe
Confidence 555555444556655556666654
No 377
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=29.17 E-value=86 Score=22.90 Aligned_cols=70 Identities=16% Similarity=0.295 Sum_probs=44.7
Q ss_pred eEEEECCeEEehhhHHHhhcCccc-ccc----------ceeecCCCCHH---HHHHHhhhcccccCchhH-HHHHHHHHh
Q psy2979 20 VTLCVDGSKFPAHRVVLAASSPYF-KVL----------ETIRLPQLSPY---FLHDCVEQCAIIKNNPQC-AQLVEEAKL 84 (400)
Q Consensus 20 v~l~~~~~~~~~hr~vLaa~s~yf-~~m----------~~vrl~~l~~~---~l~~~i~~~~l~~~~~~c-~~~l~~a~~ 84 (400)
|+|.|+|..|.--+..|...-.-+ ... ..+-| .=++. .+++++.++.|......| ..++++|..
T Consensus 15 V~LNVGG~~F~t~~~TL~~~p~S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~~Ea~f 93 (124)
T 1s1g_A 15 IVLNVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAF 93 (124)
T ss_dssp EEEEETTEEEEEEHHHHTTSTTSSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCTTSCHHHHHHHHHH
T ss_pred EEEEeCCEEEEEeHHHHhcCCCceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence 579999999999999997653221 111 11111 22333 678888899886544333 668888887
Q ss_pred cCCCcc
Q psy2979 85 FHLLPD 90 (400)
Q Consensus 85 ~~~~~~ 90 (400)
|.+.+.
T Consensus 94 y~i~~l 99 (124)
T 1s1g_A 94 YGILPE 99 (124)
T ss_dssp TTCCGG
T ss_pred cCCChH
Confidence 776654
No 378
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=28.06 E-value=86 Score=27.90 Aligned_cols=95 Identities=6% Similarity=-0.204 Sum_probs=50.6
Q ss_pred CeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEcCccCC---CCCCCeEEEEECCC
Q psy2979 295 SCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGW---DGYHDSIECYDVDN 368 (400)
Q Consensus 295 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~---~~~~~~v~~yd~~~ 368 (400)
..+|+.....+.. ...+..+|+.+++ .+...|.+... + .++ +.++|+....... ....+.|.++|+.+
T Consensus 32 ~~~yV~~~~~~~~--~d~vsvID~~t~~--v~~~i~vG~~P-~-i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T 105 (368)
T 1mda_H 32 RRSHITLPAYFAG--TTENWVSCAGCGV--TLGHSLGAFLS-L-AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT 105 (368)
T ss_dssp TEEEEEECTTTCS--SEEEEEEETTTTE--EEEEEEECTTC-E-EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred CeEEEECCccCCc--cceEEEEECCCCe--EEEEEeCCCCC-c-eEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 4567765432211 1189999988775 34445554443 3 333 5679987521010 11246799999998
Q ss_pred CcEEEecCCCC---C-----CCceeeEEEcccccccc
Q psy2979 369 DSWEIMSHLPS---A-----RSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 369 ~~W~~~~~~~~---~-----r~~~~~~~~~~~~~~~~ 397 (400)
.+= +..++. + ..-+++++-.+..++++
T Consensus 106 ~~v--v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyV 140 (368)
T 1mda_H 106 FLP--IADIELPDAPRFSVGPRVHIIGNCASSACLLF 140 (368)
T ss_dssp CCE--EEEEEETTSCSCCBSCCTTSEEECTTSSCEEE
T ss_pred CCE--EEEEECCCccccccCCCcceEEEcCCCCEEEE
Confidence 752 222211 1 22355666555555554
No 379
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.67 E-value=1.8 Score=30.94 Aligned_cols=39 Identities=18% Similarity=0.349 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHhcCceeceE-------EEECCeEEehhhHHHhhcCccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVT-------LCVDGSKFPAHRVVLAASSPYF 43 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~-------l~~~~~~~~~hr~vLaa~s~yf 43 (400)
++|+.+|.++.+++.|.++. |. .+ +..+..|+.|+..|.
T Consensus 34 ~fi~~nF~~v~~~~eFl~L~~~~L~~lL~-sd--v~~E~~vf~av~~Wv 79 (105)
T 2eqx_A 34 HCAKTHLAQLQNTEEFLHLPHRLLTDIIS-DG--VPCSQNPTEAIEAWI 79 (105)
T ss_dssp HHHHHTCHHHHTSHHHHHSCHHHHHHHHH-TC--EETTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHhhCCHHHHHHHHc-CC--CCCHHHHHHHHHHHH
Confidence 46788899999999998774 23 23 777888888877775
No 380
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=24.73 E-value=60 Score=22.67 Aligned_cols=69 Identities=13% Similarity=0.077 Sum_probs=44.0
Q ss_pred eEEEECCeEEehhhHHHhhcCc-cccccc-----------eeecCCCCH---HHHHHHhhh-cccccCchhH-HHHHHHH
Q psy2979 20 VTLCVDGSKFPAHRVVLAASSP-YFKVLE-----------TIRLPQLSP---YFLHDCVEQ-CAIIKNNPQC-AQLVEEA 82 (400)
Q Consensus 20 v~l~~~~~~~~~hr~vLaa~s~-yf~~m~-----------~vrl~~l~~---~~l~~~i~~-~~l~~~~~~c-~~~l~~a 82 (400)
|+|.|+|..|.-.+..|...-. .+..|. .+-| .=++ ..+++++.+ +.|......| ..++++|
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea 81 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI 81 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHH
Confidence 6799999999999999976532 122221 2222 1222 278889988 7876544444 5677888
Q ss_pred HhcCCCc
Q psy2979 83 KLFHLLP 89 (400)
Q Consensus 83 ~~~~~~~ 89 (400)
..|.+.+
T Consensus 82 ~fy~i~~ 88 (100)
T 1t1d_A 82 KFYELGE 88 (100)
T ss_dssp HHTTCCH
T ss_pred HHcCCCH
Confidence 7776654
No 381
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=22.94 E-value=3.9e+02 Score=23.49 Aligned_cols=140 Identities=13% Similarity=0.108 Sum_probs=73.5
Q ss_pred CeEEEEeCCC--CceEEcc--CC--C-CcccccEEEEe---CC--EEEEEcCccccCCCCcceEEEEeCCCCceeeccC-
Q psy2979 214 DSVERYDPTK--NEWSYIE--PM--K-LAVTSPAVVAH---EG--MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP- 280 (400)
Q Consensus 214 ~~v~~yd~~~--~~W~~~~--~l--~-~~~~~~~~~~~---~~--~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~- 280 (400)
..+++||+.+ .+-..+. .. . ....-|+.... ++ .|||+.-. .+...-+++.+|+.+.....+..
T Consensus 83 G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~---~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 83 GKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP---GSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp CEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECS---TTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECC---CCCCeEEEEEEECCCCEEEEEecc
Confidence 4567777763 3333332 11 1 12233455443 24 58887433 21114567778887776665543
Q ss_pred --CCCCceeeeEEEECCeEEEEcCc--CC----------CCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--C-C
Q psy2979 281 --MLIPRSGAAICALDSCIYVLGGW--HA----------STENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--D-G 343 (400)
Q Consensus 281 --~~~~r~~~~~~~~~~~iyv~GG~--~~----------~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~-~ 343 (400)
-+..+..-.++.-+|.+|+-+.. +. ... ...+++||+. +.+.+. .....+...++ + .
T Consensus 160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~-~g~vyr~d~~--~~~~~~---~~l~~pNGia~spDg~ 233 (355)
T 3sre_A 160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA-WSFVTYYSPN--DVRVVA---EGFDFANGINISPDGK 233 (355)
T ss_dssp CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCC-CEEEEEECTT--CCEEEE---EEESSEEEEEECTTSS
T ss_pred ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCC-ccEEEEEECC--eEEEee---cCCcccCcceECCCCC
Confidence 23334445555668898886541 11 112 4689999984 333322 11222334444 3 4
Q ss_pred EEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 344 KIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 344 ~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
.+|+.--. ...|++||...
T Consensus 234 ~lYvadt~------~~~I~~~~~~~ 252 (355)
T 3sre_A 234 YVYIAELL------AHKIHVYEKHA 252 (355)
T ss_dssp EEEEEEGG------GTEEEEEEECT
T ss_pred EEEEEeCC------CCeEEEEEECC
Confidence 68887533 35788888754
No 382
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=22.88 E-value=5.4e+02 Score=25.16 Aligned_cols=151 Identities=6% Similarity=-0.047 Sum_probs=81.2
Q ss_pred CeEEEEeCCC--CceEEccCCCCcccccEEEEeCCEEEEEcCccccCC-C--CcceEEEEeCCC--------Cceee-cc
Q psy2979 214 DSVERYDPTK--NEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDG-D--GIEQVQRYNPKV--------NQWQD-LA 279 (400)
Q Consensus 214 ~~v~~yd~~~--~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~-~--~~~~v~~yd~~~--------~~W~~-~~ 279 (400)
+.++..|... ++|..+ .+|. ...-....++.+|+.....-..+ . ....+...|..+ ..|+. ++
T Consensus 269 ~~~~~~~~~~~~~~~~~l-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (711)
T 4hvt_A 269 YDNYILDTKYKNLKLQKI-NMPS--DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFT 345 (711)
T ss_dssp EEEEEEECSSSSCEEEEC-CSCT--TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEEC
T ss_pred eeEEEEcCCCCCCcceEe-ecCC--cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEEC
Confidence 4556556543 567766 3333 22124567999999754310000 0 144678887654 46887 43
Q ss_pred CCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEc--cCCcCccCcceEEEE---CCEEEEE-cCccC
Q psy2979 280 PMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYK--SPMKEKRYRPGIAVI---DGKIYVL-GGEEG 353 (400)
Q Consensus 280 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~--~~~~~~~~~~~~~~~---~~~lyv~-GG~~~ 353 (400)
+- ..+..-.+...++.+++..-.+. ...+..+|+.++.|... -.+|.. ........ ++.+++. .+.
T Consensus 346 ~~-~~~~l~~~~~~~~~l~~~~~~~~----~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~-- 417 (711)
T 4hvt_A 346 PT-ANEVFNFISTTKDRVFLATYDNV----VAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENS-- 417 (711)
T ss_dssp CC-TTEEEEEEEECSSCEEEEEEETT----EEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECS--
T ss_pred CC-CCCeEEEEEEECCEEEEEEEECC----EEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecC--
Confidence 32 23344445555778777653322 45789999988888432 234421 11112211 2344443 332
Q ss_pred CCCCCCeEEEEECCCCcEEEecCCC
Q psy2979 354 WDGYHDSIECYDVDNDSWEIMSHLP 378 (400)
Q Consensus 354 ~~~~~~~v~~yd~~~~~W~~~~~~~ 378 (400)
.....++.||+. ++++.+...+
T Consensus 418 --~~P~~~~~~d~~-~~~~~l~~~~ 439 (711)
T 4hvt_A 418 --IVPPTIYLWVKT-HELKIIRKAL 439 (711)
T ss_dssp --SSCCEEEEECTT-SCEEEEECCS
T ss_pred --CCCCEEEEEeCC-CcEEEEecCC
Confidence 335689999988 7777775544
No 383
>3f6k_A Sortilin; protein sorting receptor, 10-bladed beta-propeller, Cys-rich ssortilin, sortilin VPS10P-D, protein-peptide complex, DEVE protein; HET: NAG BMA PGE; 2.00A {Homo sapiens}
Probab=21.67 E-value=3.8e+02 Score=26.15 Aligned_cols=107 Identities=5% Similarity=-0.029 Sum_probs=0.0
Q ss_pred ceEEEEeCCCCceeeccCCCCCcee---eeEEEE---CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcc
Q psy2979 263 EQVQRYNPKVNQWQDLAPMLIPRSG---AAICAL---DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRP 336 (400)
Q Consensus 263 ~~v~~yd~~~~~W~~~~~~~~~r~~---~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~ 336 (400)
..+++-+-...+|+.+......... .++++. .+.+|++|....... ...+++=+-...+|+.+.....+....
T Consensus 65 ggvyrS~DgG~TW~~v~~~~~~~~~~~~~~IavdP~dp~~vyvag~~~~~~~-~g~v~rS~DgG~TW~~~~~p~~~~~~l 143 (685)
T 3f6k_A 65 SKLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSGKVVLTAEVSGGSR-GGRIFRSSDFAKNFVQTDLPFHPLTQM 143 (685)
T ss_dssp EEEEEESSTTSSCEECGGGGTTCCBCGGGCEEECSTTCCCEEEEECCCTTCS-SCEEEEESSTTSSCEEEECSSCBSSCC
T ss_pred CeEEEEeCCCCCceECcCCCCCCcccceeEEEECCCCCCEEEEEEeccCCCC-CceEEEECCCCceeEeccCCCCCceEE
Q ss_pred eEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecC
Q psy2979 337 GIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 337 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 376 (400)
....-+....+.+|. ...+++=+-...+|+.+..
T Consensus 144 ~~~P~~~~~l~a~~~------~~gly~S~DgG~TW~~i~~ 177 (685)
T 3f6k_A 144 MYSPQNSDYLLALST------ENGLWVSKNFGGKWEEIHK 177 (685)
T ss_dssp EEETTEEEEEEEEBT------TCCEEEESSTTSSEEEEES
T ss_pred EEecCCCCEEEEEEC------CCCEEEEeCCCCCcEEeec
No 384
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=20.98 E-value=2.2e+02 Score=19.87 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=45.2
Q ss_pred eEEEECCeEEehhhHHHhhcCcc-ccccc----------eeecCCCCH---HHHHHHhhhcccccCchh-HHHHHHHHHh
Q psy2979 20 VTLCVDGSKFPAHRVVLAASSPY-FKVLE----------TIRLPQLSP---YFLHDCVEQCAIIKNNPQ-CAQLVEEAKL 84 (400)
Q Consensus 20 v~l~~~~~~~~~hr~vLaa~s~y-f~~m~----------~vrl~~l~~---~~l~~~i~~~~l~~~~~~-c~~~l~~a~~ 84 (400)
|+|.|+|..|.--+..|.....- +..+. .+-+. =++ ..+++++.++.|...... ...++++|..
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~~FiD-Rdp~~F~~ILnflR~g~l~~p~~~~~~~l~~Ea~f 80 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFD-RDPDIFRHILNFYRTGKLHYPRHECISAYDEELAF 80 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEEC-SCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCCccccccCCcccccCCCCcEEEe-CCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence 68999999999999999765331 22221 11111 122 278889999987654333 3668888887
Q ss_pred cCCCcc
Q psy2979 85 FHLLPD 90 (400)
Q Consensus 85 ~~~~~~ 90 (400)
|.+.+.
T Consensus 81 y~i~~l 86 (105)
T 1nn7_A 81 FGLIPE 86 (105)
T ss_dssp HTCCSC
T ss_pred cCCCHH
Confidence 776654
No 385
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=20.25 E-value=1e+02 Score=24.83 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=49.1
Q ss_pred Cceece-EEEECCeEEehhhHHHhhcCc-ccccccee--ecC-----------CCCH---HHHHHHhhhcccccCchhH-
Q psy2979 15 NEFCDV-TLCVDGSKFPAHRVVLAASSP-YFKVLETI--RLP-----------QLSP---YFLHDCVEQCAIIKNNPQC- 75 (400)
Q Consensus 15 ~~~~Dv-~l~~~~~~~~~hr~vLaa~s~-yf~~m~~v--rl~-----------~l~~---~~l~~~i~~~~l~~~~~~c- 75 (400)
|...++ +|.|+|..|.--+..|....+ +|..|..- .++ .=++ ..+++++.++.|......|
T Consensus 8 g~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~L~lP~~~~~ 87 (202)
T 3drx_A 8 GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAE 87 (202)
T ss_dssp SCCCCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEECSCSTTHHHHHHHHHHSCCCCCTTSCH
T ss_pred CCCCCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEecCChHHHHHHHHHhcCCccCCCCCCCH
Confidence 444444 699999999999999987643 44444211 111 1122 2678889999887655555
Q ss_pred HHHHHHHHhcCCCccc
Q psy2979 76 AQLVEEAKLFHLLPDR 91 (400)
Q Consensus 76 ~~~l~~a~~~~~~~~~ 91 (400)
..++++|..|.+.+..
T Consensus 88 ~~l~eEA~FygL~~Lv 103 (202)
T 3drx_A 88 EGVLEEAEFYNITSLI 103 (202)
T ss_dssp HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCcHHHH
Confidence 5688888777665543
Done!