RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2979
(400 letters)
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
Length = 534
Score = 119 bits (301), Expect = 1e-29
Identities = 75/352 (21%), Positives = 139/352 (39%), Gaps = 36/352 (10%)
Query: 44 KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTK-- 101
+L+ +R+ LS + IK + R I +
Sbjct: 192 LILKVLRITFLSEEGIKKLKRWKLRIKKKK------------IVFNKRCIKIIYSKKYNL 239
Query: 102 ----PRKSA-GSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSG 156
PR S GSI I + + T+ + + +V++
Sbjct: 240 NKILPRSSTFGSIIYI----HITMSIFTYNYITNYSPLSEINTIIDIHYVYCFGSVVLN- 294
Query: 157 RNTIYCLDIVDI-VYVAASMH------KILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDG 209
N IY + ++ S+ K + + L + G+ + + +Y +GG
Sbjct: 295 -NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYN 353
Query: 210 SCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYN 269
S L++VE + P +++W P+ +P VV ++YV GG I ++ + ++ V+ ++
Sbjct: 354 SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGG-ISKNDELLKTVECFS 412
Query: 270 PKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGW-HASTENT-NRVECYHIAENTWEYKS 327
N+W +P+ I G D IYV+GG + N VE Y+ N W S
Sbjct: 413 LNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472
Query: 328 PMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS 379
+ R + + + KIYV+GG++ ++ Y + IE YD ++W + P
Sbjct: 473 SLNFPRINASLCIFNNKIYVVGGDK-YEYYINEIEVYDDKTNTWTLFCKFPK 523
Score = 96.8 bits (241), Expect = 1e-21
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 236 VTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDS 295
V V ++Y GG ++ + V Y+ K W + ++ PR + ++
Sbjct: 285 VYCFGSVVLNNVIYFIGGMN-KNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNN 343
Query: 296 CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWD 355
IYV+GG + S + N VE + E+ W + P+ RY P + ++ IYV+GG D
Sbjct: 344 RIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKND 402
Query: 356 GYHDSIECYDVDNDSWEIMSHLPSARS 382
++EC+ ++ + W S LP +
Sbjct: 403 ELLKTVECFSLNTNKWSKGSPLPISHY 429
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain. The BTB (for BR-C, ttk and bab)
or POZ (for Pox virus and Zinc finger) domain is
present near the N-terminus of a fraction of zinc
finger (pfam00096) proteins and in proteins that
contain the pfam01344 motif such as Kelch and a family
of pox virus proteins. The BTB/POZ domain mediates
homomeric dimerisation and in some instances
heteromeric dimerisation. The structure of the
dimerised PLZF BTB/POZ domain has been solved and
consists of a tightly intertwined homodimer. The
central scaffolding of the protein is made up of a
cluster of alpha-helices flanked by short beta-sheets
at both the top and bottom of the molecule. POZ domains
from several zinc finger proteins have been shown to
mediate transcriptional repression and to interact with
components of histone deacetylase co-repressor
complexes including N-CoR and SMRT. The POZ or BTB
domain is also known as BR-C/Ttk or ZiN.
Length = 101
Score = 67.6 bits (166), Expect = 4e-14
Identities = 28/55 (50%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 8 FNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------ETIRLPQLSP 56
NE R+N E CDVTL V +F AH+ VLAA SPYFK L I L +SP
Sbjct: 1 LNELRENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFTGNKEVEITLEDVSP 55
>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase, for which a structure has been
solved. The kelch motif forms a beta sheet. Several of
these sheets associate to form a beta propeller
structure as found in pfam00064, pfam00400 and
pfam00415.
Length = 46
Score = 57.7 bits (140), Expect = 3e-11
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK 233
G+ +L G +Y +GG+DG L SVE YDP N WS + M
Sbjct: 6 GVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 53.4 bits (129), Expect = 8e-10
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 284 PRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK 330
PRSGA + L IYV+GG+ ++ + VE Y NTW M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGY-DGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 50.4 bits (121), Expect = 1e-08
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 332 KRYRPGIAVIDGKIYVLGGEEGWDG--YHDSIECYDVDNDSWEIMSHLP 378
R G+ V+ GKIYV+G G+DG S+E YD + ++W + +P
Sbjct: 1 PRSGAGVVVLGGKIYVIG---GYDGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 39.2 bits (92), Expect = 1e-04
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 240 AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM 281
VV G +YV GG + G + V+ Y+P+ N W L M
Sbjct: 6 GVVVLGGKIYVIGG--YDGGQSLSSVEVYDPETNTWSKLPSM 45
Score = 33.8 bits (78), Expect = 0.008
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 102 PRKSAGSI---NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLP 144
PR AG + I +GG D L SVE + +T W L +P
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
>gnl|CDD|128874 smart00612, Kelch, Kelch domain.
Length = 47
Score = 54.1 bits (131), Expect = 5e-10
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG 246
+Y VGG+DG RL SVE YDP N+W+ + M + V G
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Score = 51.4 bits (124), Expect = 6e-09
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 296 CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDG 343
IYV+GG+ + VE Y N W M R G+AVI+G
Sbjct: 1 KIYVVGGFD-GGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Score = 43.7 bits (104), Expect = 3e-06
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 344 KIYVLGGEEGWDG--YHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 390
KIYV+GG +DG S+E YD + + W + +P+ RS G +
Sbjct: 1 KIYVVGG---FDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVV 154
I VGG D L+SVE + +T W L +P S HG+ V
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAV 44
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac.
Domain in Broad-Complex, Tramtrack and Bric a brac.
Also known as POZ (poxvirus and zinc finger) domain.
Known to be a protein-protein interaction motif found
at the N-termini of several C2H2-type transcription
factors as well as Shaw-type potassium channels. Known
structure reveals a tightly intertwined dimer formed
via interactions between N-terminal strand and helix
structures. However in a subset of BTB/POZ domains,
these two secondary structures appear to be missing. Be
aware SMART predicts BTB/POZ domains without the beta1-
and alpha1-secondary structures.
Length = 97
Score = 52.7 bits (127), Expect = 6e-09
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 19 DVTLCVDGSKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPYFLHDCVE--QC 66
DVTL V G KF AH+ VLAA SPYFK L I L +SP +
Sbjct: 1 DVTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDDVSPEDFRALLNFLYT 60
Query: 67 AIIKNNPQCAQLV-EEAKLFHL 87
+ + + + E A +
Sbjct: 61 GKLDLPEENVEELLELADYLQI 82
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
Length = 557
Score = 55.4 bits (133), Expect = 2e-08
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 293 LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEE 352
+D+ I + GG++ + + N+V +I PM + R R +AVID IY +GG+
Sbjct: 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQN 361
Query: 353 GWDGYHDSIECYDVDNDSWEIMSHLPSARSWLG-CV 387
G + +IECY + +D W+++ +P A S G CV
Sbjct: 362 GTN-VERTIECYTMGDDKWKMLPDMPIALSSYGMCV 396
Score = 47.3 bits (112), Expect = 1e-05
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 277 DLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNR-VECYHIAENTWEYKSPMKEKRYR 335
+L PM+ R ++ +D IY +GG + + N R +ECY + ++ W+ M
Sbjct: 334 ELPPMIKNRCRFSLAVIDDTIYAIGGQNGT--NVERTIECYTMGDDKWKMLPDMPIALSS 391
Query: 336 PGIAVIDGKIYVLGGEEGWDGY-----------------HDSIECYDVDNDSWEIMSHL 377
G+ V+D IY++GG Y + + YD N+ WE + +
Sbjct: 392 YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF 450
Score = 46.9 bits (111), Expect = 1e-05
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 32/171 (18%)
Query: 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL--DIVD 167
+ I A+GG++ V R++E + + WK L +P A+S +G+ V + IY +
Sbjct: 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQ-YIYIIGGRTEH 410
Query: 168 IVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWS 227
I Y + +H + S+ + D S + V RYD N W
Sbjct: 411 IDYTS------VHHMNSIDMEEDT----------------HSS---NKVIRYDTVNNIWE 445
Query: 228 YIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQ-VQRYNPKV-NQWQ 276
+ P VV+H+ +YV ++D ++ + RYN N W+
Sbjct: 446 TLPNFWTGTIRPGVVSHKDDIYVV--CDIKDEKNVKTCIFRYNTNTYNGWE 494
Score = 42.3 bits (99), Expect = 4e-04
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 194 IAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGG 253
+A++D +YA+GG +G+ ++E Y ++W + M +A++S + + +Y+ GG
Sbjct: 347 LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGG 406
Query: 254 AIL----------------EDGDGIEQVQRYNPKVNQWQDL 278
ED +V RY+ N W+ L
Sbjct: 407 RTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL 447
Score = 35.8 bits (82), Expect = 0.045
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 2 KMVLTGFNEARKNNEFCDVTLCV-DGSKFPAHRVVLAASSPYFKVLETIRLPQLSPYFLH 60
+ V++ + ++ CDV + + DG + AH+ +LAA S YF+ L T +P +
Sbjct: 10 RRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFT------TPMIIR 63
Query: 61 DCV 63
D V
Sbjct: 64 DLV 66
>gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional.
Length = 480
Score = 53.9 bits (129), Expect = 7e-08
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 46/211 (21%)
Query: 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGD 260
VY +GGW + ++ + N W I PM + V LYV GG
Sbjct: 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGL-----P 328
Query: 261 GIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNR-------- 312
V+R+ W ++ +L PR A+ ++++ IYV+GG H+ T+ T
Sbjct: 329 NPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGG-HSETDTTTEYLLPNHDQ 387
Query: 313 -----------------------------VECYHIAENTWEYKSPMKEKRYRPGIAVIDG 343
E Y + NTW R P + ++D
Sbjct: 388 WQFGPSTYYPHYKSCALVFGRRLFLVGRNAEFYCESSNTWTLIDDPIYPRDNPELIIVDN 447
Query: 344 KIYVLGG-EEGWDGYHDSIECYDVDNDSWEI 373
K+ ++GG G Y D+IE Y+ SW I
Sbjct: 448 KLLLIGGFYRG--SYIDTIEVYNNRTYSWNI 476
>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase;
Provisional.
Length = 376
Score = 52.3 bits (126), Expect = 2e-07
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 45/151 (29%)
Query: 195 AMLDGFVYAVGGW-----DGSCRL-DSVERYDPTKNEWSYIE---PMKLAVTSPAVVAHE 245
A +DG +Y GG +GS ++ D V +YDP N W ++ P+ LA AV H
Sbjct: 81 AFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHV-AVSLHN 139
Query: 246 GMLYVTGG--------------AILEDGDGIEQVQR------------------YNPKVN 273
G Y+TGG A +D +++ Y+P N
Sbjct: 140 GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN 199
Query: 274 QWQDLA--PMLIPRSGAAICALDSCIYVLGG 302
QW++ P L +G+A+ + ++++ G
Sbjct: 200 QWKNAGESPFL-GTAGSAVVIKGNKLWLING 229
Score = 39.2 bits (92), Expect = 0.003
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 273 NQWQDLAPML-IPRSGAAICALDSCIYVLGGWHASTENT-----NRVECYHIAENTWEYK 326
W +A PR A +D +YV GG + + V Y N+W+ K
Sbjct: 62 KGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQ-K 120
Query: 327 SPMKEKRYRPGIAVI---DGKIYVLGG--EEGWDGY 357
+ G + +GK Y+ GG + +DGY
Sbjct: 121 LDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGY 156
Score = 39.2 bits (92), Expect = 0.003
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 239 PAVVAHEGMLYVTGGAILEDGDGIEQVQ----RYNPKVNQWQDLAPMLIPRS--GAAICA 292
+G LYV GG + +G QV +Y+PK N WQ L P G +
Sbjct: 78 AVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKL-DTRSPVGLAGHVAVS 136
Query: 293 LD-SCIYVLGG 302
L Y+ GG
Sbjct: 137 LHNGKAYITGG 147
Score = 32.3 bits (74), Expect = 0.40
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 332 KRYRPGIAVIDGKIYVLGG-----EEGWDGYHDSIECYDVDNDSWE-IMSHLPSARSWLG 385
R + A IDGK+YV GG EG D + YD +SW+ + + P G
Sbjct: 74 PREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSP--VGLAG 131
Query: 386 CVPLQIHKSQ 395
V + +H +
Sbjct: 132 HVAVSLHNGK 141
>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family. Members of
this protein family contain multiple copies of the
beta-propeller-forming Kelch repeat. All are full-length
homologs to YjhT of Escherichia coli, which has been
identified as a mutarotase for sialic acid. This protein
improves bacterial ability to obtain host sialic acid,
and thus serves as a virulence factor. Some bacteria
carry what appears to be a cyclically permuted homolog
of this protein.
Length = 346
Score = 50.8 bits (122), Expect = 6e-07
Identities = 61/256 (23%), Positives = 92/256 (35%), Gaps = 78/256 (30%)
Query: 195 AMLDGFVYAVGG-----WDGSCR-LDSVERYDPTKNEWSYIEPMKLAVTSP-------AV 241
A +DG +Y GG +GS + D V RYDP KN W KL SP
Sbjct: 60 AAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSW-----QKLDTRSPVGLLGASGF 114
Query: 242 VAHEGMLYVTGG--------------AILEDGDGIEQVQR------------------YN 269
H G Y TGG A +D + +++ Y+
Sbjct: 115 SLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYD 174
Query: 270 PKVNQWQDLA--PMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKS 327
P NQW++L P L +G+AI + + ++ G T V+ Y E+
Sbjct: 175 PSTNQWRNLGENPFL-GTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNK 233
Query: 328 ----PMKEKRYRPGIA-----VIDGKIYVLGGEE---GWDGY-------HDSI------E 362
P + + G+A + +G + V GG + Y H+ + E
Sbjct: 234 LPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSE 293
Query: 363 CYDVDNDSWEIMSHLP 378
Y +DN W + LP
Sbjct: 294 VYALDNGKWSKVGKLP 309
Score = 39.2 bits (92), Expect = 0.003
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 239 PAVVAHEGMLYVTGGAILEDGDGIEQVQ----RYNPKVNQWQDLAPMLIPRS--GAAICA 292
A +G LYV GG + +G QV RY+PK N WQ L P GA+ +
Sbjct: 57 AVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRS-PVGLLGASGFS 115
Query: 293 LD-SCIYVLGGWHASTEN 309
L Y GG + + +
Sbjct: 116 LHNGQAYFTGGVNKNIFD 133
Score = 35.0 bits (81), Expect = 0.056
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 20/111 (18%)
Query: 274 QWQDLAPML-IPRSGAAICALDSCIYVLGGWHASTENT-----NRVECYHIAENTWEYKS 327
WQ +A PR+ A A+D +YV GG + + V Y +N+W+
Sbjct: 42 GWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ--- 98
Query: 328 PMKEKRYRP-------GIAVIDGKIYVLGG--EEGWDGYHDSIECYDVDND 369
K P G ++ +G+ Y GG + +DGY + D D++
Sbjct: 99 --KLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSE 147
Score = 31.9 bits (73), Expect = 0.57
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 339 AVIDGKIYVLGG--EEGWDGY---HDSIECYDVDNDSWE-IMSHLPSARSWLGCVPLQIH 392
A IDGK+YV GG + +G D + YD +SW+ + + P LG +H
Sbjct: 60 AAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSP--VGLLGASGFSLH 117
Query: 393 KSQFV 397
Q
Sbjct: 118 NGQAY 122
Score = 31.5 bits (72), Expect = 0.74
Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 33/167 (19%)
Query: 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG-MLYVTGGAILEDG---DGIEQVQRYN 269
+V YDP+ N+W + T+ + + H+G L + G I + G ++Q
Sbjct: 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI-KPGLRTAEVKQYLFTG 226
Query: 270 PKVNQWQDLAPMLIPRS-------GAAICALDSCIYVLGG--WHASTENTN--------- 311
K+ +W L P+ P+S GA + + V GG + + EN
Sbjct: 227 GKL-EWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEG 285
Query: 312 -----RVECYHIAENTWEYKSPMKEKR-YRPGIAV-IDGKIYVLGGE 351
E Y + W + + Y G++V + + ++GGE
Sbjct: 286 LIKAWSSEVYALDNGKWSKVGKLPQGLAY--GVSVSWNNGVLLIGGE 330
>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein.
Length = 470
Score = 49.6 bits (118), Expect = 2e-06
Identities = 44/188 (23%), Positives = 68/188 (36%), Gaps = 55/188 (29%)
Query: 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGD 260
+Y GG D S + + +D T NEW + P++ T
Sbjct: 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPT----------------------- 267
Query: 261 GIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAE 320
PRS ++ A + +YV GG A T ++ Y+I +
Sbjct: 268 -----------------------PRSFHSMAADEENVYVFGGVSA-TARLKTLDSYNIVD 303
Query: 321 NTWEYKSPMKEK---RYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSW---EIM 374
W + S + R G+ V+ GK++V+ G G + D + YD D W E
Sbjct: 304 KKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE--VDDVHYYDPVQDKWTQVETF 361
Query: 375 SHLPSARS 382
PS RS
Sbjct: 362 GVRPSERS 369
>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif.
Length = 50
Score = 42.1 bits (99), Expect = 1e-05
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 333 RYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSAR 381
R + GKIYV GG + + YD + SWE + LP+ R
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 40.5 bits (95), Expect = 4e-05
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 237 TSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPR 285
T + V+ G +YV GG +V Y+P+ W+ L P+ PR
Sbjct: 3 TGHSAVSVGGKIYVFGGYS-NGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 39.7 bits (93), Expect = 8e-05
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 284 PRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR 333
PR+G + ++ IYV GG+ ++ +N+V Y +WE P+ R
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 36.7 bits (85), Expect = 8e-04
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 192 SGIAMLDGFVYAVGG-WDGSCRLDSVERYDPTKNEWSYIEPM 232
+ G +Y GG +GS + V YDP W + P+
Sbjct: 5 HSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPL 46
>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain.
Length = 48
Score = 41.1 bits (97), Expect = 2e-05
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 342 DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCV 387
GKIYV GG + + YD+D ++WE + LP R+
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAAT 46
Score = 38.4 bits (90), Expect = 2e-04
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 246 GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL 293
G +YV GG + + G + + Y+ N W+ L + PR+G A +
Sbjct: 2 GKIYVFGG-LGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
Score = 33.0 bits (76), Expect = 0.018
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 198 DGFVYAVGGWDGSC-RLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH 244
G +Y GG RL+ + YD N W + + A
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
Score = 29.9 bits (68), Expect = 0.22
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 294 DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRY 334
IYV GG N + Y + NTWE + R
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRA 41
>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family
protein. Members of this protein family show
essentially full-length homology, cyclically permuted,
to YjhT from Escherichia coli. YjhT was shown to act as
a mutarotase for sialic acid, and by this ability to be
able to act as a virulence factor. Members of the YjhT
family (TIGR03547) and this cyclically-permuted family
have multiple repeats of the beta-propeller-forming
Kelch repeat.
Length = 323
Score = 43.6 bits (103), Expect = 9e-05
Identities = 58/260 (22%), Positives = 93/260 (35%), Gaps = 38/260 (14%)
Query: 136 VWKTLSCLPFAISKHGLVVSGRNTIYCL----------DIVDIVYVAASMHKILHSLGSL 185
W LP+A + +G +S N IY + + I + I+ +L SL
Sbjct: 52 KWVKAGQLPYAAA-YGASISTENGIYYIGGSNSSESFSSVYRITLDESKEALIIETLPSL 110
Query: 186 KFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAV-VAH 244
F D DG +Y GG + ++ EW + A V V
Sbjct: 111 PFAMDNGSATYKDGKLYVGGGNANGKPSNKFYCFNLETQEWEELPDFPGAPRVQPVCVKL 170
Query: 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI---PRS---GAAICALDSCIY 298
+ LYV GG D +Y+PK W+ +A L P S A+I +S +
Sbjct: 171 QNELYVFGGG---DNIAYTDGYKYSPKTGTWEKVADPLSDGEPISLLGAASIAINESLLL 227
Query: 299 VLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYH 358
+GG+ N + I T + +S Y L + W ++
Sbjct: 228 CIGGF-----NYDVFNDAVIRLATMKDESLKSYA-----------AEYFLHPPD-WYRWN 270
Query: 359 DSIECYDVDNDSWEIMSHLP 378
D + YDV + W+ + + P
Sbjct: 271 DKVLIYDVRSGKWKSIGNSP 290
>gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 381
Score = 41.6 bits (98), Expect = 6e-04
Identities = 46/235 (19%), Positives = 76/235 (32%), Gaps = 72/235 (30%)
Query: 213 LDSVERYDPTKNEWSYIEPMKLAVTSP-------AVVAHEGMLYVTGGAILEDGDGI--- 262
+ RYDP+ N W KL SP + +Y GG +G
Sbjct: 112 FNDAYRYDPSTNSW-----HKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFED 166
Query: 263 --------EQVQR---------------------YNPKVNQWQDLA--PMLIPRSGAAIC 291
E V + Y+P NQW++L P +G+A+
Sbjct: 167 VGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFY-GNAGSAVV 225
Query: 292 ALDSCIYVLGGWHASTENTNRVECYHIAENTWEYK----SPMKEKRYRPGIA-----VID 342
+ + ++ G T V+ + ++ P + G+A +
Sbjct: 226 IKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSN 285
Query: 343 GKIYVLGG----------EEGWDGYHDSI------ECYDVDNDSWEIMSHLPSAR 381
G++ V GG + G H+ + E Y DN SW+I+ LP
Sbjct: 286 GEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELPQGL 340
Score = 35.0 bits (81), Expect = 0.059
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 17/111 (15%)
Query: 274 QWQDLAPML-IPRSGAAICALDSCIYVLGGWHASTENTNRVE----CYHIAENTW---EY 325
W +A R+ A + +YV GG+ S ++ +V Y + N+W +
Sbjct: 71 GWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT 130
Query: 326 KSPM---KEKRYRPGIAVIDGKIYVLGG--EEGWDGYHDSIECYDVDNDSW 371
+SP + KIY GG + ++GY + + D ++
Sbjct: 131 RSPTGLVGASTFSLN----GTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAV 177
Score = 33.5 bits (77), Expect = 0.19
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 19/80 (23%)
Query: 235 AVTSPAVVAHEGMLYVTGGA--------ILEDGDGIEQVQRYNPKVNQWQDL---APMLI 283
A G LYV GG + + RY+P N W L +P +
Sbjct: 82 ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFN-----DAYRYDPSTNSWHKLDTRSPTGL 136
Query: 284 PRSGAAICALDSC-IYVLGG 302
GA+ +L+ IY GG
Sbjct: 137 --VGASTFSLNGTKIYFFGG 154
Score = 29.3 bits (66), Expect = 4.1
Identities = 27/162 (16%), Positives = 60/162 (37%), Gaps = 33/162 (20%)
Query: 219 YDPTKNEWSYIEPMKLAVTSPAVVAHEG--MLYVTGGAILEDGDGIEQVQRYNPKVN--Q 274
YDP+ N+W + + + V +G + + G + G +V++ + + +
Sbjct: 201 YDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEI--KPGLRTAEVKQADFGGDNLK 258
Query: 275 WQDLAPMLIPRS-------GAAICALDSCIYVLGG--WHASTENTN-------------- 311
W L+ + P GA + + V GG + + +
Sbjct: 259 WLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSW 318
Query: 312 RVECYHIAENTWEYKSPMKEKR-YRPGIAV-IDGKIYVLGGE 351
E Y +W+ + + Y G+++ + K+ ++GGE
Sbjct: 319 NSEVYIFDNGSWKIVGELPQGLAY--GVSLSYNNKVLLIGGE 358
>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that Drosophila
ring canal kelch protein is related to Galactose Oxidase
for which a structure has been solved. The kelch motif
forms a beta sheet. Several of these sheets associate to
form a beta propeller structure as found in pfam00064,
pfam00400 and pfam00415.
Length = 48
Score = 37.0 bits (86), Expect = 6e-04
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 284 PRSGAAICALDSCIYVLGGWHAST-ENTNRVECYHIAENTWEYKSPMK 330
PR A + +YV+GG +++ + N W +
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPALP 48
Score = 35.8 bits (83), Expect = 0.002
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 333 RYRPGIAVIDGKIYVLGG-EEGWDGYHDSIECYDVDNDSWEIMSHLP 378
RY V+ GK+YV+GG D + D + + W + LP
Sbjct: 2 RYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPALP 48
Score = 31.6 bits (72), Expect = 0.059
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 194 IAMLDGFVYAVGGW--DGSCRLDSVERYDPTKNEWSYIEPMK 233
++ G +Y VGG G + DP N W+ + +
Sbjct: 7 SVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPALP 48
>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain.
Length = 49
Score = 36.1 bits (84), Expect = 0.001
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 338 IAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS 379
++ DG++Y+ GGE + +D+ ++W + LPS
Sbjct: 8 TSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSLPS 49
Score = 32.6 bits (75), Expect = 0.024
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 198 DGFVYAVGG--WDGSCRLDSVERYDPTKNEWSYIEPM 232
DG +Y GG DGS L V +D + N W+ + +
Sbjct: 12 DGRLYLFGGENEDGSV-LSDVWVFDLSTNTWTRLPSL 47
Score = 28.8 bits (65), Expect = 0.49
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 240 AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM 281
+ +G LY+ GG EDG + V ++ N W L +
Sbjct: 7 STSIGDGRLYLFGGEN-EDGSVLSDVWVFDLSTNTWTRLPSL 47
Score = 27.2 bits (61), Expect = 2.1
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 102 PRKSAGSINV----IIAVGGEDDK-VVLRSVEGFCVKTKVWKTLSCLP 144
PR S ++ + GGE++ VL V F + T W L LP
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSLP 48
>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein.
Length = 341
Score = 38.4 bits (89), Expect = 0.005
Identities = 48/200 (24%), Positives = 73/200 (36%), Gaps = 62/200 (31%)
Query: 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL-----AVTSPAVVAHEGMLYVTGGAI 255
+Y GG D YD KNEW+++ + A T ++ + E +YV GG
Sbjct: 88 LYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGG-- 145
Query: 256 LEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVEC 315
V + GG + E +E
Sbjct: 146 ---------VSK---------------------------------GGLMKTPERFRTIEA 163
Query: 316 YHIAENTW-EYKSPMK--EKRYRPGIAVIDGKIYVLGG------EEGWDGYH-DSIECYD 365
Y+IA+ W + P + EKR G AV+ GKI+V+ G G Y ++++ +D
Sbjct: 164 YNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFD 223
Query: 366 VDNDSW---EIMSHLPSARS 382
+ W E PSARS
Sbjct: 224 PASGKWTEVETTGAKPSARS 243
>gnl|CDD|238805 cd01571, NAPRTase_B, Nicotinate phosphoribosyltransferase
(NAPRTase), subgroup B. Nicotinate
phosphoribosyltransferase catalyses the formation of
NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
(PRPP) and nicotinic acid, this is the first, and also
rate limiting, reaction in the NAD salvage synthesis.
This salvage pathway serves to recycle NAD degradation
products.
Length = 302
Score = 33.4 bits (77), Expect = 0.15
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 4 VLTGFNEARKNNEFCDVTLCV--DGSKFPAHRVVLAASSPY--FKVLETI 49
VL G E E V + +G+ F VL PY F LET
Sbjct: 37 VLCGLEEVLALLEGLPVKVYALPEGTIFNPKEPVLRIEGPYQDFGELETA 86
>gnl|CDD|133127 cd06596, GH31_CPE1046, CPE1046 is an uncharacterized Clostridium
perfringens protein with a glycosyl hydrolase family 31
(GH31) domain. The domain architecture of CPE1046 and
its orthologs includes a C-terminal fibronectin type 3
(FN3) domain and a coagulation factor 5/8 type C domain
in addition to the GH31 domain. Enzymes of the GH31
family possess a wide range of different hydrolytic
activities including alpha-glucosidase (glucoamylase and
sucrase-isomaltase), alpha-xylosidase,
6-alpha-glucosyltransferase,
3-alpha-isomaltosyltransferase and alpha-1,4-glucan
lyase. All GH31 enzymes cleave a terminal carbohydrate
moiety from a substrate that varies considerably in
size, depending on the enzyme, and may be either a
starch or a glycoprotein.
Length = 261
Score = 31.6 bits (72), Expect = 0.61
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILED 258
F+ V GW G+ R + D + + W YI + + + G T D
Sbjct: 147 PFIVTVDGWAGTQRYAGIWTGDQSGS-WEYI---RFHIPTYIGSGLSGQPNTTS-----D 197
Query: 259 GDGIEQVQRYNPKVN----QWQDLAPMLIPRSGAA 289
DGI +P+ QW+ P+L+ SG A
Sbjct: 198 VDGIFG---GSPETYTRDLQWKAFTPVLMTMSGWA 229
>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase for which a structure has been solved.
The kelch motif forms a beta sheet. Several of these
sheets associate to form a beta propeller structure as
found in pfam00064, pfam00400 and pfam00415.
Length = 42
Score = 28.0 bits (63), Expect = 0.80
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 284 PRSGAAICALDSCIYVLGGWHASTE 308
PR+ + IY+ GG+ +
Sbjct: 4 PRANHCAVVVGGEIYLYGGYTSGNG 28
Score = 26.4 bits (59), Expect = 3.8
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 333 RYRPGIAVIDGKIYVLGGEEGWDGYH-DSIECYDVDND 369
R V+ G+IY+ GG +G D + +
Sbjct: 5 RANHCAVVVGGEIYLYGGYTSGNGQSSDDVYVLSLPGF 42
>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 591
Score = 30.6 bits (69), Expect = 1.9
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 239 PAVVAHEGMLYVTG----GAILEDGDGIEQVQRYNPKVNQWQDLAPM-LIPRS 286
P VA G+L G G IL + DG ++RY P + +DLAP + RS
Sbjct: 248 PTGVAGAGVLITEGVRGEGGILRNKDGERFMERYAPTL---KDLAPRDFVSRS 297
>gnl|CDD|227653 COG5350, COG5350, Predicted protein tyrosine phosphatase [General
function prediction only].
Length = 172
Score = 29.4 bits (66), Expect = 2.4
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 236 VTSPAVVAHEGMLYVTGGAILEDGDGI-----EQVQRYNPKVNQWQDLAPML------IP 284
PAV+A E L + I E DG V+ ++W AP+L I
Sbjct: 46 FHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGIS 105
Query: 285 RSGAA 289
RS AA
Sbjct: 106 RSTAA 110
>gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch. The BACK domain is
found juxtaposed to the BTB domain; they are separated
by as little as two residues.
Length = 101
Score = 26.9 bits (60), Expect = 6.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 43 FKVLETIRLPQLSPYFLHDC 62
++LE +RLP LSP +L +
Sbjct: 82 PELLEHVRLPLLSPDYLLEV 101
>gnl|CDD|149006 pfam07707, BACK, BTB And C-terminal Kelch. This domain is found
associated with pfam00651 and pfam01344. The BACK domain
is found juxtaposed to the BTB domain; they are
separated by as little as two residues. This family
appears to be closely related to the BTB domain (Finn
RD, personal observation).
Length = 101
Score = 27.1 bits (61), Expect = 7.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 44 KVLETIRLPQLSPYFLHDC 62
++L +RLP LSP +L D
Sbjct: 83 ELLSAVRLPLLSPEYLLDV 101
>gnl|CDD|213027 cd10970, CE4_DAC_u1_6s, Putative catalytic NodB homology domain of
uncharacterized prokaryotic polysaccharide deacetylases
which consist of a 6-stranded beta/alpha barrel. This
family contains uncharacterized prokaryotic
polysaccharide deacetylases. Although their biological
functions remain unknown, all members of the family
contain a conserved domain with a 6-stranded beta/alpha
barrel, which is similar to the catalytic NodB homology
domain of rhizobial NodB-like proteins, belonging to the
larger carbohydrate esterase 4 (CE4) superfamily.
Length = 194
Score = 27.7 bits (62), Expect = 9.6
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 343 GKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH 376
V+ G G + ++ + WEI SH
Sbjct: 29 ATAAVIPDSIGSSGRLTLDQLRELQDAGWEIASH 62
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.434
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,452,243
Number of extensions: 1952422
Number of successful extensions: 1498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1454
Number of HSP's successfully gapped: 75
Length of query: 400
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 301
Effective length of database: 6,546,556
Effective search space: 1970513356
Effective search space used: 1970513356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)