RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2979
(400 letters)
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 282 bits (724), Expect = 9e-94
Identities = 89/309 (28%), Positives = 143/309 (46%), Gaps = 31/309 (10%)
Query: 96 ITPRTKPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS 155
++ RT+ R +++ VGG+ K +RSVE + K + W ++ LP + G+V
Sbjct: 2 MSVRTRLRTPMNLPKLMVVVGGQAPKA-IRSVECYDFKEERWHQVAELPSRRCRAGMVYM 60
Query: 156 GRNTIYCL------DIVDIVYV----------AASMHKILHSLGSLKFDFDVSGIAMLDG 199
++ + V V A+M +LG+ A+L+G
Sbjct: 61 A-GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGA----------AVLNG 109
Query: 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDG 259
+YAVGG+DGS L SVE Y+ NEW ++ PM +S V G+LY GG +
Sbjct: 110 LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASR 169
Query: 260 DGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIA 319
+ V+ YN N+W +A M RSGA + L++ +Y +GG VE Y
Sbjct: 170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLV-RKSVEVYDPT 228
Query: 320 ENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM-SHLP 378
N W + M R G+ ++G +YV+GG++G S+E Y+ D W ++ S +
Sbjct: 229 TNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDG-SCNLASVEYYNPTTDKWTVVSSCMS 287
Query: 379 SARSWLGCV 387
+ RS+ G
Sbjct: 288 TGRSYAGVT 296
Score = 195 bits (497), Expect = 9e-60
Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 7/197 (3%)
Query: 195 AMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGA 254
L + VGG + SVE YD + W + + +V G+++ GG
Sbjct: 12 MNLPKLMVVVGGQAPKA-IRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGG- 69
Query: 255 ILEDGDGIEQ-VQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRV 313
+G + V Y+P +QW +A M RS L+ +Y +GG+ ST + V
Sbjct: 70 --FNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG-LSSV 126
Query: 314 ECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG-YHDSIECYDVDNDSWE 372
E Y+I N W + +PM +R G+ V+ G +Y +GG + ++ECY+ + W
Sbjct: 127 EAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186
Query: 373 IMSHLPSARSWLGCVPL 389
++ + + RS G L
Sbjct: 187 YIAEMSTRRSGAGVGVL 203
Score = 186 bits (475), Expect = 1e-56
Identities = 76/279 (27%), Positives = 121/279 (43%), Gaps = 45/279 (16%)
Query: 88 LPDRRSAHITPRTKPRKSAGSI-NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFA 146
LP RR + ++ AVGG + + +R+V+ + W +++ +
Sbjct: 48 LPSRRCRA---------GMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR 98
Query: 147 ISKHGL--------VVSGRNTIYCLDIVDIVY--------VAASMHKILHSLGSLKFDFD 190
S G V G + L V+ Y A M+ S+G
Sbjct: 99 RSTLGAAVLNGLLYAVGGFDGSTGLSSVE-AYNIKSNEWFHVAPMNTRRSSVG------- 150
Query: 191 VSGIAMLDGFVYAVGGWDGSCR--LDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGML 248
+ ++ G +YAVGG+D + R L +VE Y+ T NEW+YI M + V +L
Sbjct: 151 ---VGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLL 207
Query: 249 YVTGGAILEDGDGI-EQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHAST 307
Y GG DG + + V+ Y+P N W+ +A M + R A +CA++ +YV+GG S
Sbjct: 208 YAVGG---HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSC 264
Query: 308 ENTNRVECYHIAENTWEYKSP-MKEKRYRPGIAVIDGKI 345
N VE Y+ + W S M R G+ VID ++
Sbjct: 265 -NLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 282 bits (723), Expect = 1e-93
Identities = 89/315 (28%), Positives = 139/315 (44%), Gaps = 39/315 (12%)
Query: 97 TPRTKPRKSAGSINVIIAVGGED-DKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS 155
PRT+ R A V++ VGG + + VE + KT+ W L + V
Sbjct: 4 GPRTRARLGAN--EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL 61
Query: 156 GRNTIYCL------DIVDIVYV-------------AASMHKILHSLGSLKFDFDVSGIAM 196
+ IY + + V A M+ G+
Sbjct: 62 H-DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA----------TT 110
Query: 197 LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAIL 256
L +Y GG+DGS R S+ERYDP ++WS + M+ A +V G++Y GG
Sbjct: 111 LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGG--- 167
Query: 257 EDGDGI-EQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVEC 315
DG I V++Y+P W ++ PM RSGA + L+ IYV+GG+ + + + VE
Sbjct: 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGT-AHLSSVEA 226
Query: 316 YHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375
Y+I ++W + M R G V+ G++Y + G + SIECYD DSWE+++
Sbjct: 227 YNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAG-YDGNSLLSSIECYDPIIDSWEVVT 285
Query: 376 HLPSARSWLGCVPLQ 390
+ + R G L+
Sbjct: 286 SMGTQRCDAGVCVLR 300
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 278 bits (712), Expect = 8e-92
Identities = 94/316 (29%), Positives = 136/316 (43%), Gaps = 40/316 (12%)
Query: 95 HITPRTKPRKSAGSI--NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGL 152
H + PR S +I GG + L +E + W L+ L S
Sbjct: 8 HHSSGLVPRGSHAPKVGRLIYTAGGYFRQS-LSYLEAYNPSNGTWLRLADLQVPRSGLAG 66
Query: 153 VVSGRNTIYCL----------DIVDIVYV----------AASMHKILHSLGSLKFDFDVS 192
V G +Y + + A M + +G
Sbjct: 67 CVVG-GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV-------- 117
Query: 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG 252
++DG +YAVGG G +SVERY+P ++EW + PM V +LY G
Sbjct: 118 --GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVG 175
Query: 253 GAILEDGDGI-EQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTN 311
G DG + Y P+ N+W+ + M RSGA +C L +CIY GG+ + N
Sbjct: 176 GF---DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ-DQLN 231
Query: 312 RVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371
VE Y + TW + +PMK +R GI V G+IYVLGG +G + DS+ECYD D D+W
Sbjct: 232 SVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG-HTFLDSVECYDPDTDTW 290
Query: 372 EIMSHLPSARSWLGCV 387
++ + S RS +G
Sbjct: 291 SEVTRMTSGRSGVGVA 306
Score = 203 bits (519), Expect = 5e-63
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 7/201 (3%)
Query: 192 SGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVT 251
S + +Y GG+ L +E Y+P+ W + +++ + A G+LY
Sbjct: 18 SHAPKVGRLIYTAGGYFRQS-LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAV 76
Query: 252 GGAILEDGDGIE---QVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTE 308
GG DG + YNP NQW APM +PR+ + +D IY +GG H
Sbjct: 77 GGRN-NSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIH 135
Query: 309 NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDN 368
N VE Y + W +PM +R G+AV++ +Y +GG +G +S ECY +
Sbjct: 136 -HNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT-NRLNSAECYYPER 193
Query: 369 DSWEIMSHLPSARSWLGCVPL 389
+ W +++ + + RS G L
Sbjct: 194 NEWRMITAMNTIRSGAGVCVL 214
Score = 180 bits (458), Expect = 7e-54
Identities = 71/274 (25%), Positives = 110/274 (40%), Gaps = 44/274 (16%)
Query: 88 LPDRRSAHITPRTKPRKSAGSI-NVIIAVGGE----DDKVVLRSVEGFCVKTKVWKTLSC 142
L RS + + ++ AVGG D +++ + T W +
Sbjct: 57 LQVPRSGL---------AGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP 107
Query: 143 LPFAISKHGL--------VVSGRNTIYCLDIVDIVY--------VAASMHKILHSLGSLK 186
+ ++ G+ V G + + V+ Y + A M +G
Sbjct: 108 MSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVE-RYEPERDEWHLVAPMLTRRIGVG--- 163
Query: 187 FDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG 246
+A+L+ +YAVGG+DG+ RL+S E Y P +NEW I M + V
Sbjct: 164 -------VAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHN 216
Query: 247 MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHAS 306
+Y GG + D + V+RY+ + W +APM RS I IYVLGG+
Sbjct: 217 CIYAAGG--YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH 274
Query: 307 TENTNRVECYHIAENTWEYKSPMKEKRYRPGIAV 340
T + VECY +TW + M R G+AV
Sbjct: 275 T-FLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
Score = 110 bits (276), Expect = 1e-27
Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 273 NQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEK 332
+ + L+PR A + IY GG+ ++ + +E Y+ + TW + ++
Sbjct: 4 HHHHHHSSGLVPRGSHA-PKVGRLIYTAGGY--FRQSLSYLEAYNPSNGTWLRLADLQVP 60
Query: 333 RYRPGIAVIDGKIYVLGGEEGWDG---YHDSIECYDVDNDSWEIMSHLPSARSWLGCVPL 389
R V+ G +Y +GG +++CY+ + W + + R+ +G +
Sbjct: 61 RSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI 120
Query: 390 Q 390
Sbjct: 121 D 121
Score = 58.1 bits (141), Expect = 1e-09
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 319 AENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP 378
+ + + S R + IY GG +E Y+ N +W ++ L
Sbjct: 2 SSHHHHHHSSGLVPRGSHA-PKVGRLIYTAGGYFR--QSLSYLEAYNPSNGTWLRLADLQ 58
Query: 379 SARSWLGCVPL 389
RS L +
Sbjct: 59 VPRSGLAGCVV 69
Score = 46.9 bits (112), Expect = 4e-06
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 96 ITPRTKPRKSAGSI---NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGL 152
+ P R + G I +GG D L SVE + T W ++ + S G+
Sbjct: 246 VAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGV 305
Query: 153 VVS 155
V+
Sbjct: 306 AVT 308
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 267 bits (685), Expect = 7e-88
Identities = 68/309 (22%), Positives = 107/309 (34%), Gaps = 36/309 (11%)
Query: 97 TPRTKPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSG 156
+ T+PR+ I GG +S F K W + C V
Sbjct: 1 SMGTRPRRKKHD-YRIALFGGSQ----PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWD 55
Query: 157 RNTIYCL-----DIVDIVYV----------AASMHKILHSLGSLKFDFDVSGIAMLDGFV 201
N +Y L + + SL + +G +
Sbjct: 56 -NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAA----------CAAEGKI 104
Query: 202 YAVGGWD-GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGD 260
Y GG + G+ L E YD W M S +V G++YV GG++ +
Sbjct: 105 YTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVS 164
Query: 261 G--IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHI 318
G + + Y+P W +L PM+ R + + I+ +GG + + VE Y I
Sbjct: 165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLG-GLDNVEYYDI 223
Query: 319 AENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP 378
N W+ SPM K A + +YVL G +G G I Y+ + D W S +
Sbjct: 224 KLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQG-VGRLGHILEYNTETDKWVANSKVR 282
Query: 379 SARSWLGCV 387
+ +
Sbjct: 283 AFPVTSCLI 291
Score = 199 bits (507), Expect = 3e-61
Identities = 49/195 (25%), Positives = 74/195 (37%), Gaps = 10/195 (5%)
Query: 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILE 257
D + GG + S ++P W+ I A V + ++Y+ GG
Sbjct: 12 DYRIALFGG----SQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGG---S 64
Query: 258 DGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317
I+++ YN + W PR A CA + IY GG ECY
Sbjct: 65 QLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYD 124
Query: 318 IAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYH---DSIECYDVDNDSWEIM 374
+W K M +R G+ +G IYV GG G + +S E YD ++W +
Sbjct: 125 TRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL 184
Query: 375 SHLPSARSWLGCVPL 389
+ AR G V +
Sbjct: 185 CPMIEARKNHGLVFV 199
Score = 182 bits (464), Expect = 7e-55
Identities = 56/285 (19%), Positives = 103/285 (36%), Gaps = 46/285 (16%)
Query: 95 HITPRTKPRKSAGSI---NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHG 151
I + R+ A + NV+ +GG ++ ++ + V W + P
Sbjct: 38 DIRCPFEKRRDAACVFWDNVVYILGGSQLFP-IKRMDCYNVVKDSWYSKLGPPTPRDSLA 96
Query: 152 LVVSGRNTIY----------CLDIVDIVY--------VAASMHKILHSLGSLKFDFDVSG 193
+ IY L + + Y SM S G
Sbjct: 97 ACAAE-GKIYTSGGSEVGNSALYLFE-CYDTRTESWHTKPSMLTQRCSHG---------- 144
Query: 194 IAMLDGFVYAVGGWDGS----CRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLY 249
+ +G +Y GG G+ L+S E YDP W+ + PM A + +V + ++
Sbjct: 145 MVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIF 204
Query: 250 VTGGAILEDGDGI-EQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTE 308
GG ++G G + V+ Y+ K+N+W+ ++PM A+ S +YVL G+
Sbjct: 205 AVGG---QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVG- 260
Query: 309 NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEG 353
+ Y+ + W S ++ + + + G E
Sbjct: 261 RLGHILEYNTETDKWVANSKVRAFPVTSCLICV---VDTCGANEE 302
Score = 148 bits (375), Expect = 9e-42
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 8/154 (5%)
Query: 237 TSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSC 296
T P H+ + + GG+ + + +NPK W D+ R AA D+
Sbjct: 4 TRPRRKKHDYRIALFGGSQPQS------CRYFNPKDYSWTDIRCPFEKRRDAACVFWDNV 57
Query: 297 IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG 356
+Y+LGG ++CY++ +++W K R +GKIY GG E +
Sbjct: 58 VYILGGSQLFPIKR--MDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNS 115
Query: 357 YHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 390
ECYD +SW + + R G V
Sbjct: 116 ALYLFECYDTRTESWHTKPSMLTQRCSHGMVEAN 149
Score = 139 bits (352), Expect = 2e-38
Identities = 50/247 (20%), Positives = 85/247 (34%), Gaps = 52/247 (21%)
Query: 88 LPDRRSAHITPRTKPRKSAGSIN-VIIAVGGEDD-KVVLRSVEGFCVKTKVWKTLSCLPF 145
P R + +A + I GG + L E + +T+ W T +
Sbjct: 88 PPTPRDSL---------AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT 138
Query: 146 AISKHGLVVSGRNTIY-------------CLDIVDIVY--------VAASMHKILHSLGS 184
HG+V + IY L+ + VY M + + G
Sbjct: 139 QRCSHGMVEAN-GLIYVCGGSLGNNVSGRVLNSCE-VYDPATETWTELCPMIEARKNHG- 195
Query: 185 LKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH 244
+ + ++AVGG +G LD+VE YD NEW + PM + A
Sbjct: 196 ---------LVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV 246
Query: 245 EGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGW 303
++YV G G G + + YN + ++W + + + + C+ G
Sbjct: 247 GSIVYVLAG---FQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLI----CVVDTCGA 299
Query: 304 HASTENT 310
+ T T
Sbjct: 300 NEETLET 306
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 245 bits (628), Expect = 3e-79
Identities = 71/328 (21%), Positives = 113/328 (34%), Gaps = 51/328 (15%)
Query: 97 TPRTKPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKT-KVWKTLSCLPFAISKHGLVVS 155
PR ++I+ V + + + + T + +V
Sbjct: 3 YLNDIPRHGMFVKDLILLVNDT-------AAVAYDPMENECYLTALAEQIPRNHSSIVTQ 55
Query: 156 GRNTIYCLDIVDIVYVA----ASMHKILHSLGSLKFDFDVS-----------------GI 194
+ VYV L S F D G+
Sbjct: 56 Q----------NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGL 105
Query: 195 AMLDGFVYAVGGWD--GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG 252
+D +Y V G D LDSV YDP +WS ++ + + V V++H GM+Y G
Sbjct: 106 GEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLG 165
Query: 253 GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNR 312
G +D +V YNPK W+DLAPM PRS + I + GG +
Sbjct: 166 GKT-DDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGL-SAS 223
Query: 313 VECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG--------YHDSIECY 364
VE + + N WE + ++R + + G +Y +GG + I Y
Sbjct: 224 VEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKY 283
Query: 365 DVDNDSWEIMSHLPSARSWLGCVPLQIH 392
+ D W M S C+ +++
Sbjct: 284 EDDKKEWAGMLKEIRYASGASCLATRLN 311
Score = 188 bits (480), Expect = 4e-57
Identities = 58/302 (19%), Positives = 104/302 (34%), Gaps = 55/302 (18%)
Query: 85 FHLLPDRRSAHITPRTKPRKSAGSI---NVIIAVGGED------DKVVLRSVEGFCVKTK 135
+ + + PR + + N + VGG D+ + +
Sbjct: 29 YDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS 88
Query: 136 VWKTLSCLPFAISKHGLVVSGRNTIY-----------CLDIVDIVY--------VAASMH 176
W L LP A GL + IY LD V Y ++
Sbjct: 89 EWVGLPPLPSARCLFGLGEVD-DKIYVVAGKDLQTEASLDSVL-CYDPVAAKWSEVKNLP 146
Query: 177 KILHSLGSLKFDFDVSGIAMLDGFVYAVGGW-DGSCRLDSVERYDPTKNEWSYIEPMKLA 235
++ +G +Y +GG D + V Y+P K +W + PMK
Sbjct: 147 IKVYGHNV----------ISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTP 196
Query: 236 VTSPAVVAHEGMLYVTGGAILEDGDGI-EQVQRYNPKVNQWQDLAPMLIPRSGAAICALD 294
+ V H+G + + GG DG+ V+ ++ K N+W+ + RS ++ +L
Sbjct: 197 RSMFGVAIHKGKIVIAGG---VTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLA 253
Query: 295 SCIYVLGGWHASTE--------NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIY 346
+Y +GG+ N + Y + W +KE RY G + + ++
Sbjct: 254 GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA--GMLKEIRYASGASCLATRLN 311
Query: 347 VL 348
+
Sbjct: 312 LF 313
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 209 bits (535), Expect = 3e-65
Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 8/205 (3%)
Query: 193 GIAMLDGFVYAVGGWDGS------CRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG 246
+ + V+ GG + ++D +EW + P+ +
Sbjct: 40 SLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALN 99
Query: 247 MLYVTGGAILEDGD-GIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHA 305
+YV GG ++DG+ ++ V Y+ +W + P+ G + + +YV+GG +
Sbjct: 100 SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGS 159
Query: 306 STENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYD 365
+ N++ Y + W+ +PM+ R G V DG+I V G G S E Y
Sbjct: 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTD-TGLTSSAEVYS 218
Query: 366 VDNDSWEIMSHLPSARSWLGCVPLQ 390
+ ++ W P RS L V L
Sbjct: 219 ITDNKWAPFEAFPQERSSLSLVSLV 243
Score = 186 bits (475), Expect = 2e-56
Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 14/200 (7%)
Query: 197 LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI-EPMKLAVTSPAVVAHEGMLYVTGGAI 255
L ++ + + YDP NE ++ ++V E ++V GG
Sbjct: 3 LQDLIFMISE-------EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLF 55
Query: 256 LEDGDGIEQ----VQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHAS--TEN 309
+ + + +++ ++W + P+ PR + + IYV+GG
Sbjct: 56 YNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERC 115
Query: 310 TNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDND 369
+ V CY W P+ Y + +YV+GG+ + + YD
Sbjct: 116 LDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175
Query: 370 SWEIMSHLPSARSWLGCVPL 389
W+ ++ + +ARS G
Sbjct: 176 EWKELAPMQTARSLFGATVH 195
Score = 180 bits (459), Expect = 6e-54
Identities = 55/303 (18%), Positives = 94/303 (31%), Gaps = 56/303 (18%)
Query: 90 DRRSAHITPRTKPRKSAGSI---NVIIAVGGED------DKVVLRSVEGFCVKTKVWKTL 140
+ P+ + N + GG + + F W +
Sbjct: 23 NECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82
Query: 141 SCLPFAISKHGLVVSGRNTIY------------CLDIVDIVY--------VAASMHKILH 180
LP GL + N+IY CLD V Y + + +++
Sbjct: 83 PPLPSPRCLFGLGEAL-NSIYVVGGREIKDGERCLDSVM-CYDRLSFKWGESDPLPYVVY 140
Query: 181 SLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCR-LDSVERYDPTKNEWSYIEPMKLAVTSP 239
VY +GG + L+ + YDP K EW + PM+ A +
Sbjct: 141 GHTV----------LSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLF 190
Query: 240 AVVAHEGMLYVTGGAILEDGDGI-EQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIY 298
H+G + V G G+ + Y+ N+W RS ++ +L +Y
Sbjct: 191 GATVHDGRIIVAAG---VTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLY 247
Query: 299 VLGGW--------HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGG 350
+GG+ N + Y+ E WE Y G + ++ VL
Sbjct: 248 AIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREI--AYAAGATFLPVRLNVLRL 305
Query: 351 EEG 353
+
Sbjct: 306 TKM 308
Score = 144 bits (365), Expect = 3e-40
Identities = 49/244 (20%), Positives = 78/244 (31%), Gaps = 52/244 (21%)
Query: 88 LPDRRSAHITPRTKPRKSAGSIN-VIIAVGG---EDDKVVLRSVEGFCVKTKVWKTLSCL 143
LP R G I VGG +D + L SV + + W L
Sbjct: 85 LPSPRCLF---------GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL 135
Query: 144 PFAISKHGLVVSGRNTIY----------CLDIVDIVY--------VAASMHKILHSLGSL 185
P+ + H ++ + +Y CL+ + VY A M G
Sbjct: 136 PYVVYGHTVLSHM-DLVYVIGGKGSDRKCLNKMC-VYDPKKFEWKELAPMQTARSLFG-- 191
Query: 186 KFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE 245
+ DG + G + S E Y T N+W+ E +S ++V+
Sbjct: 192 --------ATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLV 243
Query: 246 GMLYVTGG-------AILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIY 298
G LY GG + + + RYN + +W+ + A L +
Sbjct: 244 GTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLRE--IAYAAGATFLPVRLN 301
Query: 299 VLGG 302
VL
Sbjct: 302 VLRL 305
Score = 82.8 bits (205), Expect = 6e-18
Identities = 25/172 (14%), Positives = 39/172 (22%), Gaps = 59/172 (34%)
Query: 102 PRKSAGSI---NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRN 158
R G+ II G D + S E + + W P S LV
Sbjct: 186 ARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS---- 241
Query: 159 TIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDG--------- 209
L G +YA+GG+
Sbjct: 242 --------------------------------------LVGTLYAIGGFATLETESGELV 263
Query: 210 SCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG 261
L+ + RY+ + +W + + L V
Sbjct: 264 PTELNDIWRYNEEEKKWEGVLREIAYAAGATFLP--VRLNVLRLT---KMAE 310
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 155 bits (393), Expect = 6e-44
Identities = 39/335 (11%), Positives = 80/335 (23%), Gaps = 73/335 (21%)
Query: 102 PRKSAGSI---NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRN 158
P KS + + G + K K W L+ P
Sbjct: 9 PFKSGTGAIDNDTVYIGLGSAGTAWYKLD--TQAKDKKWTALAAFPGGPRDQATSAFIDG 66
Query: 159 TIYCL-----------DIVDIVY-----------VAASMHKILHSLGSLKFDFDVSGIAM 196
+Y + + V+ + + + +
Sbjct: 67 NLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAG----------HVTFV 116
Query: 197 LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAIL 256
+G Y GG + + E + + + I+ +
Sbjct: 117 HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA--------------- 161
Query: 257 EDGDGIEQVQRYNPKVNQWQDLAPM-LIPRSGAAICALDSCIYVLGGWHASTENTNRVEC 315
ED + + ++P QW +GAA+ +++ G T+ V
Sbjct: 162 EDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFE 221
Query: 316 YHIAE--NTWEYKSPMKEKRYRPGI--AVIDGKIYVLGGEEGWDG--------------- 356
W +P+ G + + + GG
Sbjct: 222 LDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGL 281
Query: 357 -YHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 390
S + + N W+ L R++ +P
Sbjct: 282 KKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWN 316
Score = 110 bits (276), Expect = 2e-27
Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 11/161 (6%)
Query: 231 PMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM-LIPRSGAA 289
+ S +Y+ G G ++ K +W LA PR A
Sbjct: 5 ETPVPFKSGTGAIDNDTVYIGLG---SAGTAWYKL-DTQAKDKKWTALAAFPGGPRDQAT 60
Query: 290 ICALDSCIYVLGGWHASTEN----TNRVECYHIAENTW-EYKSPMKEKRYRPGIAVIDGK 344
+D +YV GG ++E N V Y+ N+W + S V +GK
Sbjct: 61 SAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGK 120
Query: 345 IYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLG 385
YV GG + ++ E + + + +
Sbjct: 121 AYVTGGVNQ-NIFNGYFEDLNEAGKDSTAIDKINAHYFDKK 160
Score = 97.7 bits (243), Expect = 9e-23
Identities = 27/261 (10%), Positives = 54/261 (20%), Gaps = 41/261 (15%)
Query: 87 LLPDRRSAHITPRTKPRKSAGSIN-VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPF 145
P + H N GG + + E K + +
Sbjct: 104 HAPMGMAGH---------VTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINA 154
Query: 146 AISKHGLVVSG-RNTIYCLDIV-DIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYA 203
+ D A + + + +
Sbjct: 155 HYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAG---------AAVVNKGDKTWL 205
Query: 204 VGGWDGS-CRLDSVERYDPTKNEWSYIE----PMKLAVTSPAVVAHEGMLYVTGGAILED 258
+ G R D+V D T N + + V L GGA +
Sbjct: 206 INGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKG 265
Query: 259 GDG---------------IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGW 303
+ +W + R+ ++ + ++GG
Sbjct: 266 SRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGE 325
Query: 304 HASTENTNRVECYHIAENTWE 324
A + + +N
Sbjct: 326 TAGGKAVTDSVLITVKDNKVT 346
Score = 85.8 bits (212), Expect = 1e-18
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 13/121 (10%)
Query: 278 LAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVEC--YHIAENTWEYKSPM-KEKRY 334
L +P + +Y+ G + W + R
Sbjct: 3 LPETPVPFKSGTGAIDNDTVYIGLG-----SAGTAWYKLDTQAKDKKWTALAAFPGGPRD 57
Query: 335 RPGIAVIDGKIYVLGG----EEGWDGYHDSIECYDVDNDSW-EIMSHLPSARSWLGCVPL 389
+ A IDG +YV GG EG + + Y+ +SW ++MSH P +
Sbjct: 58 QATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVH 117
Query: 390 Q 390
Sbjct: 118 N 118
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 95.8 bits (237), Expect = 2e-21
Identities = 40/222 (18%), Positives = 73/222 (32%), Gaps = 30/222 (13%)
Query: 192 SGIAMLDGFVYAVGG-WDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPA----VVAHEG 246
S M DG V+ +GG W G + E Y P+ W+ + K+ A + +
Sbjct: 291 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN 350
Query: 247 MLYVTG---GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAIC---------ALD 294
++ G G++ + G Y + R A A+
Sbjct: 351 HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVK 410
Query: 295 SCIYVLGGW-----HASTENTNRVECY--HIAENTWEYKSPMKEKRYRP-GIAVIDGKIY 346
I GG +T N + + + NT + + R + + DG +
Sbjct: 411 GKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTF 470
Query: 347 VLGGEEGWDGYHDS-----IECYDVDNDSWEIMSHLPSARSW 383
+ GG+ + DS E Y + D++ + R +
Sbjct: 471 ITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVY 512
Score = 71.9 bits (175), Expect = 1e-13
Identities = 31/209 (14%), Positives = 59/209 (28%), Gaps = 30/209 (14%)
Query: 187 FDFDVSGIAMLDGFVYAVGGWDGSC-----RLDSVERYDPTKNEWS---------YIEPM 232
D G+ D + G GS Y + + P
Sbjct: 338 LTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPD 397
Query: 233 KLAVTSPAVVAHEGMLYVTGGAILEDG----DGIEQVQRYNPK--VNQWQDLAPMLIPRS 286
+ + A +G + GG+ + P N + R+
Sbjct: 398 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART 457
Query: 287 GAAICAL-DSCIYVLGGWHASTENTNR-----VECYHIAENTWEYKSPMKEKRYRPGIAV 340
L D ++ GG + E Y ++T+ ++P R I++
Sbjct: 458 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISL 517
Query: 341 I--DGKIYVLGGEEGWDGY--HDSIECYD 365
+ DG+++ GG D H + +
Sbjct: 518 LLPDGRVFNGGGGLCGDCTTNHFDAQIFT 546
Score = 66.1 bits (160), Expect = 8e-12
Identities = 27/197 (13%), Positives = 53/197 (26%), Gaps = 15/197 (7%)
Query: 196 MLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAI 255
G G S + ++ + + G + VTGG
Sbjct: 204 SSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGG-- 261
Query: 256 LEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVE 314
+ ++ Y+ + W M + R + + D ++ +GG + E
Sbjct: 262 ----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGE 317
Query: 315 CYHIAENTWEYKSPMKEKRYRP----GIAVIDGKIYVLGGEEGW----DGYHDSIECYDV 366
Y + TW K G+ D ++ G ++G Y
Sbjct: 318 VYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377
Query: 367 DNDSWEIMSHLPSARSW 383
+ + S R
Sbjct: 378 GSGDVKSAGKRQSNRGV 394
Score = 50.0 bits (118), Expect = 9e-07
Identities = 21/144 (14%), Positives = 49/144 (34%), Gaps = 15/144 (10%)
Query: 191 VSGIAMLDGFVYAVGGW------DGSCRLDSVERYDPTKNEWSYIEPMKLAVT--SPAVV 242
+ + + DG + GG + S + + E Y P ++ + P + S +++
Sbjct: 459 HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLL 518
Query: 243 AHEGMLYVTGGAILEDGDGIEQ-VQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLG 301
+G ++ GG + D Q + P + P+ I + +G
Sbjct: 519 LPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPK----ITRTSTQSVKVG 574
Query: 302 GWHASTENTN--RVECYHIAENTW 323
G + +++ + T
Sbjct: 575 GRITISTDSSISKASLIRYGTATH 598
Score = 35.3 bits (80), Expect = 0.039
Identities = 31/233 (13%), Positives = 58/233 (24%), Gaps = 31/233 (13%)
Query: 187 FDFDVSGIAMLDGFVYA---VGGWDGS-------CRLDSVERYDP-TKNEWSYIEPMKLA 235
+ D+ ++G G +G D P W K +
Sbjct: 72 YTIDMKTTQNVNGLSMLPRQDGNQNGWIGRHEVYLSSDGTNWGSPVASGSWFADSTTKYS 131
Query: 236 VTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDS 295
+ ++ +T E Q P I +
Sbjct: 132 NFETRPARYVRLVAITEANGQPWTSIAEINVFQASSYTAPQPGLGRWGPTIDLPIVPAAA 191
Query: 296 CIYVLGGWHASTENTNR------------VECYHIAENTWEYKSPM--KEKRYRPGIAVI 341
I G + + + ++ K + PGI++
Sbjct: 192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD 251
Query: 342 -DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHK 393
+G+I V GG + YD +DSW + AR + + +
Sbjct: 252 GNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 299
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel
related zinc finger protein 3, HKR3, ZBTB48, Z finger,
oncogene; 1.74A {Homo sapiens}
Length = 119
Score = 84.2 bits (209), Expect = 4e-20
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------ETIRLPQLSP 56
VL N+ R+ ++CD TL V G F AH VLA S +F+ L ++ LP
Sbjct: 11 VLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGSVVLPAGFA 69
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 84.6 bits (210), Expect = 5e-20
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------ETIRLPQLSP 56
VL N+ R+ ++CD TL V G F AH VLA S +F+ + ++ LP
Sbjct: 12 VLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGSVVLPAGFA 70
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A
{Homo sapiens} PDB: 3m52_A
Length = 119
Score = 83.1 bits (206), Expect = 1e-19
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL-----ETIRLPQLSP 56
VL N+ R+ CD T VDG F AH+ VLAA S YFK+L + + L +
Sbjct: 14 VLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKDVVHLDISNA 71
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 83.1 bits (206), Expect = 1e-19
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL-----ETIRLPQLSP 56
+L NE R + FCDVT+ V+ KF AH+ +L+ASS YF L + + L +
Sbjct: 18 LLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRA 75
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 82.7 bits (205), Expect = 2e-19
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL-----ETIRLPQLSP 56
+L N+ R CDV + VD +F AHR VLA +S F++L + L LSP
Sbjct: 15 LLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLSP 72
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain,
POK, proto oncogene, transcription F transcription;
2.00A {Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 82.2 bits (204), Expect = 2e-19
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL 46
+L+G NE R CDV + V+G +FP HR VLAA S YFK L
Sbjct: 12 ILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKL 54
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 81.9 bits (203), Expect = 4e-19
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
+L NE R +CDV++ V G F AHR VLAASS YF+
Sbjct: 20 ILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFR 60
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 81.5 bits (202), Expect = 4e-19
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
VL N+ RK + CDVT+ V+G +F AHR VLAA S YF
Sbjct: 16 VLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFH 56
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A
{Homo sapiens} PDB: 3ohv_A
Length = 125
Score = 81.5 bits (202), Expect = 5e-19
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
+L G N+ RK + CDVTL V+ +F AHR VLAA S YF
Sbjct: 19 ILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFW 59
>2vpk_A Myoneurin; transcription regulation, transcription,
metal-binding, alternative splicing, zinc, nucleus, BTB
domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 81.1 bits (201), Expect = 5e-19
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL 46
+L N+ R+ CD T+ + +F AHR VLA+ S YF +
Sbjct: 9 LLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAI 51
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional
repression, transcription; 1.30A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 81.5 bits (202), Expect = 5e-19
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
VL N R + DV + V +F AH+ VL A S F
Sbjct: 16 VLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFY 56
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 81.2 bits (201), Expect = 8e-19
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
VL N+ RK + CDVT+ V+G +F AHR VLAA S YF
Sbjct: 23 VLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFH 63
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 81.6 bits (202), Expect = 8e-19
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
+L + R+ + FCD L +DG + P + +LAA+SPY +
Sbjct: 34 LLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIR 74
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 87.5 bits (216), Expect = 8e-19
Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 27/209 (12%)
Query: 198 DGFVYAVGGWDGSCR-LDSVERYDPTKNEWSYIEPMKLAVTSP-AVVAHEGMLYVTGGAI 255
+ + +GG + L +D EWS I+ + A +G + + GG
Sbjct: 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGV- 509
Query: 256 LEDGDGIEQVQRYNPKVNQWQDLAPM---LIPRSGAAICALD----SCIYVLGGWHASTE 308
+ YN ++D+ P +A D I + GG+ T
Sbjct: 510 ----TEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTT 565
Query: 309 NTNRVECYHIAENTWEYK-------SPMKEKRYRPGIAVI-DGKIYVLGG--EEGWDGYH 358
+++ + +RY I I K+ ++GG G
Sbjct: 566 VSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRT 625
Query: 359 DSIECYDVDNDSW---EIMSHLPSARSWL 384
+SI D +++ I + S +
Sbjct: 626 NSIISLDPLSETLTSIPISRRIWEDHSLM 654
Score = 80.2 bits (197), Expect = 2e-16
Identities = 29/218 (13%), Positives = 67/218 (30%), Gaps = 29/218 (13%)
Query: 195 AMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPA--------VVAHEG 246
+ V+ +GG + R++ + + ++ + P ++
Sbjct: 394 DVAGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN 452
Query: 247 MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHA 305
L + GG G+ ++ K +W + + R + C+L D + +LGG
Sbjct: 453 QLLLIGG-RKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTE 511
Query: 306 STENTNRVECYHIAENTWEYKSPMKEKRYRPG------IAVIDGKIYVLGGEEGWDGYH- 358
+ Y++ E ++ +P E + + +LGG
Sbjct: 512 G----PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVS 567
Query: 359 DSIECYDVDNDSWE-------IMSHLPSARSWLGCVPL 389
D + D ++ + H R +
Sbjct: 568 DKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI 605
Score = 68.6 bits (167), Expect = 1e-12
Identities = 33/266 (12%), Positives = 71/266 (26%), Gaps = 72/266 (27%)
Query: 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVY 170
+++ G + L F +KT+ W + L +H
Sbjct: 454 LLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-------------- 499
Query: 171 VAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE 230
DG V +GG ++ Y+ T+ + +
Sbjct: 500 ---------------------------DGNVLILGGVTEG---PAMLLYNVTEEIFKDVT 529
Query: 231 PMKLAVTSPAVVAHEGMLY--------VTGGAILEDGDGIEQVQRYNPKVNQWQD----- 277
P + G+ + + GG ++ ++ + +
Sbjct: 530 PK--DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVI 587
Query: 278 --LAPMLIPRSGAAICAL-DSCIYVLGGW--HASTENTNRVECYHIAENTWEYKSPMKEK 332
L L R G+ I + + ++GG + TN + T +
Sbjct: 588 KKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRI 647
Query: 333 RYRPG--------IAVIDGKIYVLGG 350
++ G I+++GG
Sbjct: 648 WEDHSLMLAGFSLVSTSMGTIHIIGG 673
Score = 60.5 bits (146), Expect = 5e-10
Identities = 22/193 (11%), Positives = 52/193 (26%), Gaps = 14/193 (7%)
Query: 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGD 260
V + D + + + ++ A +
Sbjct: 304 VNVGDMFQLWESADEATKK--ELLKVEPFDELEEFHLFCHHYVLCHATNYKEFAFTQGFL 361
Query: 261 GIEQVQRYNPKVNQWQDLAPMLIP--RSGAAICALDSCIYVLGGWHASTENTNRVECYHI 318
+ N V++ L P R + + ++ +GG + N + I
Sbjct: 362 FDRSISEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYR--VNEILQLSI 419
Query: 319 AENTWEYK------SPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370
+ + K S + R I + ++ ++GG + +D+
Sbjct: 420 HYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTRE 479
Query: 371 WEIMSHLPSARSW 383
W ++ L R
Sbjct: 480 WSMIKSLSHTRFR 492
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens}
PDB: 3hve_B
Length = 256
Score = 81.1 bits (201), Expect = 9e-18
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 1 MKMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
+L + R+ + FCD L +DG + P + +LAA+SPY +
Sbjct: 15 AARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIR 58
Score = 44.1 bits (105), Expect = 4e-05
Identities = 3/34 (8%), Positives = 13/34 (38%)
Query: 44 KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQ 77
V+ + + L +L + + +++ +
Sbjct: 218 DVMSALWVSGLDSSYLREQMLNEPLVREIVKECS 251
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 77.3 bits (191), Expect = 1e-17
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 9 NEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVLETIRLPQ 53
AR CD + V +FPAH +VLA S L +
Sbjct: 22 LAARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQWALGE 66
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 73.3 bits (181), Expect = 7e-16
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
+ +N+ F D LCV G +F AH+ +LAA SP F
Sbjct: 12 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 52
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 76.2 bits (188), Expect = 9e-16
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 4 VLTGFNEARKNNEFCDVTLC---VDGSKFPAHRVVLAASSPYFK 44
+ NE R+ FCD+TLC G +F AHR VLAA++ YF
Sbjct: 19 LSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFT 62
Score = 66.1 bits (162), Expect = 2e-12
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 44 KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRT 100
++ + +RL Q+ P +L V+ ++ NN C +LV +A H L I T
Sbjct: 226 ELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAVERHALRAEN---IQSGT 279
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 69.2 bits (170), Expect = 3e-14
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
+ +N+ F D LCV G +F AH+ +LAA SP F
Sbjct: 21 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 61
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 64.5 bits (158), Expect = 3e-13
Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 12 RKNNEFCDVTLCV----DGSKFPAHRVVLAASSPYFK 44
N DV V PAH+ VLA S F
Sbjct: 3 FNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFY 39
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 60.3 bits (146), Expect = 3e-10
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
+ +N+ F D LCV G +F AH+ +LAA SP F
Sbjct: 161 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 201
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade
beta-propeller., struct genomics, PSI-2, protein
structure initiative; 2.00A {Methanococcus maripaludis}
Length = 330
Score = 40.4 bits (95), Expect = 6e-04
Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 48/178 (26%)
Query: 113 IAVGGEDDKVVLRSVEGFCVKTKVWKT-----LSCLPFAISKHGLVVSGRNTIYCLD--- 164
I +G + + + +G + W + C P +I K G + G + +Y ++
Sbjct: 33 IYLGSSNKNLYAINTDG----SVKWFFKSGEIIECRP-SIGKDGTIYFGSDKVYAINPDG 87
Query: 165 -----------------IVD-IVYVAASMHKI--LHSLGSLKFDFDVSG------IAMLD 198
I + I+YV + + +++ G+ K+ F I D
Sbjct: 88 TEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSED 147
Query: 199 GFVYAVGGWDGSCRLDSVERYDPT-KNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAI 255
G +Y VG D + +P +W + A+TS A + +G +Y +
Sbjct: 148 GTIY-VGSNDN-----YLYAINPDGTEKWRF--KTNDAITSAASIGKDGTIYFGSDKV 197
Score = 37.0 bits (86), Expect = 0.009
Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 49/175 (28%)
Query: 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPF----AISKHGLVVSGRNTIYCLDIV- 166
I VG D+ + + +G T+ W+ + +I K G + G + +Y ++
Sbjct: 149 TIYVGSNDNYLYAINPDG----TEKWRFKTNDAITSAASIGKDGTIYFGSDKVYAINPDG 204
Query: 167 ---------------------DIVYVAASMHKILHSL---GSLKFDFDV------SGIAM 196
+YV S+ L+++ G+ K+ F S +
Sbjct: 205 TEKWNFYAGYWTVTRPAISEDGTIYVT-SLDGHLYAINPDGTEKWRFKTGKRIESSPVIG 263
Query: 197 LDGFVYAVGGWDGSCRLDSVERYDPT-KNEWSYIEPMKLAVTSPAVVAHEGMLYV 250
+Y G +DG +P +W++ + + V+ G +Y
Sbjct: 264 NTDTIY-FGSYDGHLYA-----INPDGTEKWNF--ETGSWIIATPVIDENGTIYF 310
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.028
Identities = 38/271 (14%), Positives = 68/271 (25%), Gaps = 110/271 (40%)
Query: 135 KVWK-----TLSCLPFAISKHGLVVSGRNTIYCLDIVD-------IVYVAASMHKILHSL 182
VW F+I LDIV I + +I +
Sbjct: 1644 DVWNRADNHFKDTYGFSI---------------LDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 183 GSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSV-ERYDPTKNEWSYIEPMKL----AVT 237
++ F+ DG + + + + + +++ L T
Sbjct: 1689 SAMIFE----------------TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 238 SPAVVA----------HEGM-----------------LYVTGGAI-LEDGDGIEQV---- 265
PA+ +G+ L + +E +E V
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESL--VEVVFYRG 1790
Query: 266 ---QRYNPKVNQWQDLAPM--LIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAE 320
Q P+ + M + P AA + ++ YV+ VE I
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER--VGKRTGWLVE---IV- 1844
Query: 321 NTWEYKSPMKEKRYRPGIAVIDGKIYVLGGE 351
N Y + YV G+
Sbjct: 1845 N---YNVE--------------NQQYVAAGD 1858
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.25
Identities = 38/282 (13%), Positives = 76/282 (26%), Gaps = 104/282 (36%)
Query: 162 CLDIVDIVYVAASMHKILHSLGSLKFDF---------DVSGIAMLDGFVYAVGGWDGSCR 212
CL ++ V A K ++ F+ L
Sbjct: 246 CLLVLLNVQNA----KAWNA-----FNLSCKILLTTRFKQVTDFLSAATT--------TH 288
Query: 213 LDSVERYDP-TKNE-------WSYIEPMKL---AV-TSPAVVAHEGMLYVTGGAILEDG- 259
+ T +E + P L + T+P ++ ++ + DG
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---II----AESIRDGL 341
Query: 260 DGIEQVQRYN----------------PKVNQ--WQDLA--P--MLIPRSGAAICALDSCI 297
+ + N P + + L+ P IP + +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT--ILLSLI---- 395
Query: 298 YVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGY 357
W ++ + + N S + EK+ + I IY+ + + Y
Sbjct: 396 -----WFDVIKS----DVMVVV-NKLHKYS-LVEKQPKESTISIPS-IYLELKVKLENEY 443
Query: 358 --HDS-IECYDV----DNDS-----------WEIMSHLPSAR 381
H S ++ Y++ D+D I HL +
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Score = 32.5 bits (73), Expect = 0.31
Identities = 26/168 (15%), Positives = 46/168 (27%), Gaps = 56/168 (33%)
Query: 44 KVLETIR--LPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTK 101
K+ I L L P ++ ++ P SAHI
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSV-------------------FPP--SAHIPT--- 389
Query: 102 PRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCL-----PFAISKHGLVVSG 156
++ + + K + V K S + IS +
Sbjct: 390 --------ILLSLIWFDVIKSDVMVVVNKLHK------YSLVEKQPKESTISIPSI---- 431
Query: 157 RNTIYCLDIVDIVYVAASMHKIL--HSLGSLKFDFDVSGIAMLDGFVY 202
Y L++ + ++H+ + H FD D LD + Y
Sbjct: 432 ----Y-LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 30.0 bits (68), Expect = 1.3
Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 24/153 (15%)
Query: 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILE 257
DG V+ + D + + P A +V+ G ++ T E
Sbjct: 30 DGKVWFTQHKANK-----ISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFT-----E 79
Query: 258 DGDGIEQVQRYNP--KVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVEC 315
+G ++ + + ++ P P G + I+ + N +R+
Sbjct: 80 NGAN--KIGKLSKKGGFTEYPLPQPDSGPY-GITEGL-NGDIWF------TQLNGDRIGK 129
Query: 316 YHIAENTWEYKSPMKEKRYRPGIAV-IDGKIYV 347
+EY P K I + D ++
Sbjct: 130 LTADGTIYEYDLPNKGSYPA-FITLGSDNALWF 161
Score = 28.8 bits (65), Expect = 3.4
Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 25/159 (15%)
Query: 193 GIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVT 251
GI L+G ++ +G D + + + Y P K + + + + L+ T
Sbjct: 108 GITEGLNGDIW-FTQLNG----DRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFT 162
Query: 252 GGAILEDGDGIEQVQRYNP--KVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTEN 309
E+ + + R K+ ++ P G D ++
Sbjct: 163 -----ENQNN--SIGRITNTGKLEEYPLPTNAAAPV-GITSGN-DGALWF-----VEIMG 208
Query: 310 TNRVECYHIAENTWEYKSPMKEKRYRPGIAV-IDGKIYV 347
N++ EY P R I + +I+
Sbjct: 209 -NKIGRITTTGEISEYDIPTPNARPH-AITAGKNSEIWF 245
Score = 27.3 bits (61), Expect = 9.4
Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 17/124 (13%)
Query: 150 HGLVVSGRNTIYCLDIVD--IVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGG 206
+ + N ++ + + I + + + L + GI DG ++ V
Sbjct: 149 AFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPT--NAAAPVGITSGNDGALWFVEI 206
Query: 207 WDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQ 266
+ R T Y P A ++ T E G Q+
Sbjct: 207 MGNK-----IGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFT-----EWGAN--QIG 254
Query: 267 RYNP 270
R
Sbjct: 255 RITN 258
>3noj_A 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloac decarboxylase;
class II aldolase, A-B-B-A sandwich, metalloprotein,
lyase; HET: PG4; 1.82A {Pseudomonas putida}
Length = 238
Score = 29.2 bits (66), Expect = 2.0
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 93 SAHITPRTKPRKSAGSINVIIAVGG 117
+ I + +++ GS+N+ + GG
Sbjct: 137 ARAINAQGTVKETLGSVNLPVICGG 161
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 29.4 bits (66), Expect = 2.3
Identities = 35/216 (16%), Positives = 65/216 (30%), Gaps = 65/216 (30%)
Query: 150 HGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDG 209
HGL + + D ++H++ K D +L G
Sbjct: 94 HGLSIDTDGNYWVTD--------VALHQV------FKLDPHSKEGPLLILGRSMQPG-SD 138
Query: 210 SCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYN 269
P +AV G ++V+ DG ++ +++
Sbjct: 139 QNHFCQ---------------PTDVAVE-----PSTGAVFVS------DGYCNSRIVQFS 172
Query: 270 PK---VNQWQDLAPMLIPRSG-----AAICALDSC--IYVLGGWHASTENTNRVECYHIA 319
P V QW + + PR G ++ + + V A EN R++C+
Sbjct: 173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV-----ADREN-GRIQCFKTD 226
Query: 320 ENTW-------EYKSPMKEKRYRPGIAV-IDGKIYV 347
+ + + Y PG ++GK Y
Sbjct: 227 TKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYF 262
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA
replication inhibitor, phosphoprotein, checkpoint
signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe}
PDB: 2vxc_A*
Length = 241
Score = 28.7 bits (63), Expect = 2.9
Identities = 22/169 (13%), Positives = 49/169 (28%), Gaps = 12/169 (7%)
Query: 8 FNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPY--FKVLETIRL--PQLSPYFLHDCV 63
FN+ K+ + L ++ + + + K LE + P + P F+ C+
Sbjct: 44 FNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRKVKYLEALAFNIPCVHPQFIKQCL 103
Query: 64 EQCAIIKNNP--------QCAQLVEEAKLFHLLPDRRSAHITPRTKPRKSAGSINVIIAV 115
+ ++ +P ++ K I II
Sbjct: 104 KMNRVVDFSPYLLASGYSHRLDCTLSQRIEPFDTTDSLYDRLLARKGPLFGKKILFIIPE 163
Query: 116 GGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLD 164
K + + +G V+ L+ + + + I +D
Sbjct: 164 AKSWQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLECDLILTMD 212
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 28.4 bits (64), Expect = 3.4
Identities = 23/159 (14%), Positives = 48/159 (30%), Gaps = 25/159 (15%)
Query: 193 GIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVT 251
GI +G ++ +G + + R Y P K + S + + L+ T
Sbjct: 103 GITEGPNGDIW-FTEMNG----NRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFT 157
Query: 252 GGAILEDGDGIEQVQRYNP--KVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTEN 309
E+ + + R + +++ P P G D ++
Sbjct: 158 -----ENQNN--AIGRITESGDITEFKIPTPASGPV-GITKGN-DDALWF-----VEIIG 203
Query: 310 TNRVECYHIAENTWEYKSPMKEKRYRPGIAV-IDGKIYV 347
N++ + E+K P R I ++
Sbjct: 204 -NKIGRITTSGEITEFKIPTPNARPH-AITAGAGIDLWF 240
Score = 27.7 bits (62), Expect = 6.1
Identities = 17/153 (11%), Positives = 42/153 (27%), Gaps = 25/153 (16%)
Query: 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILE 257
D ++ + + + R + + + P + ++ L+ E
Sbjct: 151 DNALWFTENQNNA-----IGRITESGDITEFKIPTPASGPVGITKGNDDALWFV-----E 200
Query: 258 DGDGIEQVQRYNP--KVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVEC 315
++ R ++ +++ P P A ++ + N++
Sbjct: 201 IIGN--KIGRITTSGEITEFKIPTPNARPH-AITAGAGID-LWF------TEWGANKIGR 250
Query: 316 YHIAENTWEYKSPMKEKRYRP-GIAVIDGKIYV 347
EY K P GI I+
Sbjct: 251 LTSNNIIEEYPIQ--IKSAEPHGICFDGETIWF 281
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 28.3 bits (62), Expect = 5.8
Identities = 13/134 (9%), Positives = 42/134 (31%), Gaps = 19/134 (14%)
Query: 110 NVIIAVGGEDDKVVL---RSVEGFCVKTKVWKTLSCLPFAISKHG-LVVSGR--NTIYCL 163
+ +++ D + + + ++ + +P + +++ +
Sbjct: 323 DTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAV 382
Query: 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVER--YD 220
+H L + + ++ I + + G DGS + + R
Sbjct: 383 PS--------RAAFAVHPL--VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLH 432
Query: 221 PTKNEWSYIEPMKL 234
KN + + ++L
Sbjct: 433 GIKNSSATQKSLRL 446
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 28.3 bits (63), Expect = 6.4
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 230 EPMKLAVTSPAVVAHEGMLYV 250
E L T+PA + G+L+
Sbjct: 1051 ETDNLDHTTPATITRCGLLWF 1071
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 27.4 bits (60), Expect = 8.1
Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 24/141 (17%)
Query: 88 LPDRRSAHITPRTKPRKSAGSINVI-------IAVGGEDDKVVLRSVEGFCVKTKV---- 136
L D ++ PR +I + + +++ + + V ++
Sbjct: 65 LKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS 124
Query: 137 ---WKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSG 193
+ +++ + R TI D I+HS S D + S
Sbjct: 125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED------DSQYIVHSAKS---DVEYSS 175
Query: 194 IAM-LDGFVYAVGGWDGSCRL 213
+ D + A+ DG +
Sbjct: 176 GVLHKDSLLLALYSPDGILDV 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.434
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,391,262
Number of extensions: 391273
Number of successful extensions: 1153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 905
Number of HSP's successfully gapped: 103
Length of query: 400
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 304
Effective length of database: 4,021,377
Effective search space: 1222498608
Effective search space used: 1222498608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)