RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2980
(92 letters)
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
Length = 534
Score = 61.7 bits (150), Expect = 9e-13
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 10 ENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVD 69
+ N VE + E+ W + P+ RY P + ++ IYV+GG D ++EC+ ++
Sbjct: 355 ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLN 414
Query: 70 NDSWEIMSHLPSARS 84
+ W S LP +
Sbjct: 415 TNKWSKGSPLPISHY 429
Score = 54.0 bits (130), Expect = 5e-10
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 10 ENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYH--DSIECYD 67
E VEC+ + N W SP+ Y DGKIYV+GG D + +E Y+
Sbjct: 403 ELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYN 462
Query: 68 VDNDSWEIMSHL 79
+ W +S L
Sbjct: 463 PVTNKWTELSSL 474
Score = 48.2 bits (115), Expect = 5e-08
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 13 NRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 72
N VE Y+ N W S + R + + + KIYV+GG++ ++ Y + IE YD ++
Sbjct: 456 NIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDK-YEYYINEIEVYDDKTNT 514
Query: 73 WEIMSHLPS 81
W + P
Sbjct: 515 WTLFCKFPK 523
Score = 40.5 bits (95), Expect = 2e-05
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 1 MLRGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYH 60
+ G + + + N V Y +W + R PG+ V + +IYV+GG
Sbjct: 299 FIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYN-SISL 357
Query: 61 DSIECYDVDNDSWEIMSHLPSARSWLGCVPL 91
+++E + W L R V +
Sbjct: 358 NTVESWKPGESKWREEPPLIFPRYNPCVVNV 388
Score = 25.1 bits (55), Expect = 7.6
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 35 RYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARS 84
Y G V++ IY +GG + +S+ YD SW + L R
Sbjct: 285 VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRK 334
>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase, for which a structure has been
solved. The kelch motif forms a beta sheet. Several of
these sheets associate to form a beta propeller
structure as found in pfam00064, pfam00400 and
pfam00415.
Length = 46
Score = 47.3 bits (113), Expect = 5e-09
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 34 KRYRPGIAVIDGKIYVLGGEEGWDG--YHDSIECYDVDNDSWEIMSHLP 80
R G+ V+ GKIYV+G G+DG S+E YD + ++W + +P
Sbjct: 1 PRSGAGVVVLGGKIYVIG---GYDGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 31.9 bits (73), Expect = 0.005
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 4 GWHASTENTNRVECYHIAENTWEYKSPMK 32
G + ++ + VE Y NTW M
Sbjct: 18 GGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
Length = 557
Score = 49.2 bits (117), Expect = 2e-08
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 4 GWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSI 63
G++ + + N+V +I PM + R R +AVID IY +GG+ G + +I
Sbjct: 311 GYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTI 369
Query: 64 ECYDVDNDSWEIMSHLPSARSWLG-CV 89
ECY + +D W+++ +P A S G CV
Sbjct: 370 ECYTMGDDKWKMLPDMPIALSSYGMCV 396
Score = 32.7 bits (74), Expect = 0.016
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 17/82 (20%)
Query: 15 VECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGY--------------- 59
+ECY + ++ W+ M G+ V+D IY++GG Y
Sbjct: 369 IECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428
Query: 60 --HDSIECYDVDNDSWEIMSHL 79
+ + YD N+ WE + +
Sbjct: 429 HSSNKVIRYDTVNNIWETLPNF 450
>gnl|CDD|128874 smart00612, Kelch, Kelch domain.
Length = 47
Score = 41.4 bits (98), Expect = 1e-06
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 46 KIYVLGGEEGWDG--YHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 92
KIYV+GG +DG S+E YD + + W + +P+ RS G +
Sbjct: 1 KIYVVGG---FDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 6 HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDG 45
+ VE Y N W M R G+AVI+G
Sbjct: 8 FDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif.
Length = 50
Score = 40.5 bits (95), Expect = 3e-06
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 35 RYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSAR 83
R + GKIYV GG + + YD + SWE + LP+ R
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 23.9 bits (52), Expect = 6.5
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 4 GWHASTENTNRVECYHIAENTWEYKSPMKEKR 35
G+ ++ +N+V Y +WE P+ R
Sbjct: 19 GYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain.
Length = 48
Score = 39.2 bits (92), Expect = 6e-06
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 44 DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCV 89
GKIYV GG + + YD+D ++WE + LP R+
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAAT 46
>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain.
Length = 49
Score = 34.9 bits (81), Expect = 4e-04
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 40 IAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS 81
++ DG++Y+ GGE + +D+ ++W + LPS
Sbjct: 8 TSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSLPS 49
>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that Drosophila
ring canal kelch protein is related to Galactose
Oxidase for which a structure has been solved. The
kelch motif forms a beta sheet. Several of these sheets
associate to form a beta propeller structure as found
in pfam00064, pfam00400 and pfam00415.
Length = 48
Score = 33.5 bits (77), Expect = 0.001
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 35 RYRPGIAVIDGKIYVLGG-EEGWDGYHDSIECYDVDNDSWEIMSHLP 80
RY V+ GK+YV+GG D + D + + W + LP
Sbjct: 2 RYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPALP 48
>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein.
Length = 341
Score = 31.9 bits (72), Expect = 0.029
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 15 VECYHIAENTW-EYKSPMK--EKRYRPGIAVIDGKIYVLGG------EEGWDGYH-DSIE 64
+E Y+IA+ W + P + EKR G AV+ GKI+V+ G G Y ++++
Sbjct: 161 IEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQ 220
Query: 65 CYDVDNDSW---EIMSHLPSARS 84
+D + W E PSARS
Sbjct: 221 FFDPASGKWTEVETTGAKPSARS 243
>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase;
Provisional.
Length = 376
Score = 30.8 bits (70), Expect = 0.075
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 34 KRYRPGIAVIDGKIYVLGG-----EEGWDGYHDSIECYDVDNDSWE-IMSHLP 80
R + A IDGK+YV GG EG D + YD +SW+ + + P
Sbjct: 74 PREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSP 126
>gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional.
Length = 480
Score = 30.4 bits (68), Expect = 0.088
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 11 NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDN 70
N VE + + W + + R P +A I+ IYV+GG D + E ++
Sbjct: 329 NPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETD---TTTEYLLPNH 385
Query: 71 DSWE 74
D W+
Sbjct: 386 DQWQ 389
Score = 28.5 bits (63), Expect = 0.41
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 16 ECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEI 75
E Y + NTW R P + ++D K+ ++GG Y D+IE Y+ SW I
Sbjct: 418 EFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYR-GSYIDTIEVYNNRTYSWNI 476
>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family. Members of
this protein family contain multiple copies of the
beta-propeller-forming Kelch repeat. All are full-length
homologs to YjhT of Escherichia coli, which has been
identified as a mutarotase for sialic acid. This protein
improves bacterial ability to obtain host sialic acid,
and thus serves as a virulence factor. Some bacteria
carry what appears to be a cyclically permuted homolog
of this protein.
Length = 346
Score = 27.7 bits (62), Expect = 0.68
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 41 AVIDGKIYVLGG--EEGWDGY---HDSIECYDVDNDSWE-IMSHLP 80
A IDGK+YV GG + +G D + YD +SW+ + + P
Sbjct: 60 AAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSP 105
>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase for which a structure has been
solved. The kelch motif forms a beta sheet. Several of
these sheets associate to form a beta propeller
structure as found in pfam00064, pfam00400 and
pfam00415.
Length = 42
Score = 26.0 bits (58), Expect = 0.79
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 35 RYRPGIAVIDGKIYVLGGEEGWDGYH-DSIECYDVDND 71
R V+ G+IY+ GG +G D + +
Sbjct: 5 RANHCAVVVGGEIYLYGGYTSGNGQSSDDVYVLSLPGF 42
>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family
protein. Members of this protein family show
essentially full-length homology, cyclically permuted,
to YjhT from Escherichia coli. YjhT was shown to act as
a mutarotase for sialic acid, and by this ability to be
able to act as a virulence factor. Members of the YjhT
family (TIGR03547) and this cyclically-permuted family
have multiple repeats of the beta-propeller-forming
Kelch repeat.
Length = 323
Score = 26.7 bits (59), Expect = 1.7
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 42 VIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP-SARSWLGCVPLQ 92
DGK+YV GG + C++++ WE + P + R CV LQ
Sbjct: 121 YKDGKLYVGGGNANGKPSN-KFYCFNLETQEWEELPDFPGAPRVQPVCVKLQ 171
>gnl|CDD|213027 cd10970, CE4_DAC_u1_6s, Putative catalytic NodB homology domain
of uncharacterized prokaryotic polysaccharide
deacetylases which consist of a 6-stranded beta/alpha
barrel. This family contains uncharacterized
prokaryotic polysaccharide deacetylases. Although their
biological functions remain unknown, all members of the
family contain a conserved domain with a 6-stranded
beta/alpha barrel, which is similar to the catalytic
NodB homology domain of rhizobial NodB-like proteins,
belonging to the larger carbohydrate esterase 4 (CE4)
superfamily.
Length = 194
Score = 26.5 bits (59), Expect = 2.0
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 45 GKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH 78
V+ G G + ++ + WEI SH
Sbjct: 29 ATAAVIPDSIGSSGRLTLDQLRELQDAGWEIASH 62
>gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 381
Score = 25.8 bits (57), Expect = 3.1
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 41 AVIDGKIYVLGG----EEGWDGYHDSIECYDVDNDSWE-IMSHLP 80
AVI GK+YV GG + YD +SW + + P
Sbjct: 89 AVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSP 133
>gnl|CDD|220184 pfam09332, Mcm10, Mcm10 replication factor. Mcm10 is a eukaryotic
DNA replication factor that regulates the stability and
chromatin association of DNA polymerase alpha.
Length = 346
Score = 25.6 bits (56), Expect = 3.7
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 17 CYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEE 54
C + WE + +KEK+ I G+ + GEE
Sbjct: 308 CKNCGLFKWERDAMLKEKK-----GKIGGETLLPRGEE 340
>gnl|CDD|225333 COG2706, COG2706, 3-carboxymuconate cyclase [Carbohydrate transport
and metabolism].
Length = 346
Score = 25.8 bits (57), Expect = 4.0
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 17/75 (22%)
Query: 9 TENTNRVECYHIAENTWEYK----SPMKEKRY--RPGIAVI----DGK-IYVLGGEEGWD 57
E + V+ +++ + + A I DG+ +Y +
Sbjct: 209 NELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS------N 262
Query: 58 GYHDSIECYDVDNDS 72
HDSI + VD D
Sbjct: 263 RGHDSIAVFSVDPDG 277
>gnl|CDD|236207 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 450
Score = 25.6 bits (57), Expect = 4.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 29 SPMKEKRYRPGIAVIDGKIYVLGG 52
P+ +RYRPG ++DG + V G
Sbjct: 24 QPVPLRRYRPGQPLLDGPVLVGGA 47
>gnl|CDD|233901 TIGR02505, RTPR, ribonucleoside-triphosphate reductase,
adenosylcobalamin-dependent. This model represents a
group of adenosylcobalamin(B12)-dependent ribonucleotide
reductases (RNR) related to the characterized species
from Lactococcus leichmannii. RNR's are responsible for
the conversion of the ribose sugar of RNA into the
deoxyribose sugar of DNA. This is the rate-limiting step
of DNA biosynthesis. Thus model identifies NrdJ enzymes
only in cyanobacteria, lactococcus and certain
bacteriophage. A separate model (TIGR02504) identifies a
larger group of divergent B12-dependent RNR's [Purines,
pyrimidines, nucleosides, and nucleotides,
2'-Deoxyribonucleotide metabolism].
Length = 713
Score = 25.7 bits (56), Expect = 4.9
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 39 GIAVIDGKIYVLG-GEEGWDGYHDSIECYDVDNDSWEIMSHLP-SARSW 85
I +D +I V +E + Y S+E V + LP + W
Sbjct: 139 QIPRVDQEIKVQLVVDETSESYDASVEVGAVSKNEDVQDVDLPDTREGW 187
>gnl|CDD|217974 pfam04227, Indigoidine_A, Indigoidine synthase A like protein.
Indigoidine is a blue pigment synthesised by Erwinia
chrysanthemi implicated in pathogenicity and protection
from oxidative stress. IdgA is involved in indigoidine
biosynthesis, but its specific function is unknown. The
recommended name for this protein is now
pseudouridine-5'-phosphate glycosidase.
Length = 293
Score = 25.1 bits (56), Expect = 5.1
Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 40 IAVIDGKIYV-LGGEE 54
IA+IDG+I V L EE
Sbjct: 51 IAIIDGRIKVGLSDEE 66
>gnl|CDD|225312 COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase
[General function prediction only].
Length = 265
Score = 25.4 bits (56), Expect = 5.5
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 19 HIAENTWEYKSPMKEKRYRPGIA 41
H+A NTW + G+A
Sbjct: 212 HLAANTWNSRGARPRNANASGLA 234
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 25.4 bits (55), Expect = 6.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 8 STENTNRVECYHIAENTWEYKSPMKEKRY 36
S EN+ +V YHI ++ + K + ++Y
Sbjct: 915 SNENSEKVHIYHIIKHIKDGKIKIGFRKY 943
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.465
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,723,037
Number of extensions: 375276
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 35
Length of query: 92
Length of database: 10,937,602
Length adjustment: 59
Effective length of query: 33
Effective length of database: 8,320,716
Effective search space: 274583628
Effective search space used: 274583628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)