RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2980
(92 letters)
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 98.1 bits (245), Expect = 1e-26
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 6 HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIEC 65
T + + VE Y+I ++W + M R G V+ G++Y + G + SIEC
Sbjct: 215 FDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAG-YDGNSLLSSIEC 273
Query: 66 YDVDNDSWEIMSHLPSARSWLGCVPLQ 92
YD DSWE+++ + + R G L+
Sbjct: 274 YDPIIDSWEVVTSMGTQRCDAGVCVLR 300
Score = 93.5 bits (233), Expect = 5e-25
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 13 NRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 72
+E Y + W M+ R G+ V G IY LGG +G + +S+E YD
Sbjct: 128 TSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGH 186
Query: 73 WEIMSHLPSARSWLGCVPL 91
W ++ + + RS G L
Sbjct: 187 WTNVTPMATKRSGAGVALL 205
Score = 91.6 bits (228), Expect = 3e-24
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 4 GWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSI 63
G + N VE Y W +PM KR G+A+++ IYV+GG +G + S+
Sbjct: 166 GGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG-TAHLSSV 224
Query: 64 ECYDVDNDSWEIMSHLPSARSWLGCVPLQ 92
E Y++ DSW ++ + + R ++G L+
Sbjct: 225 EAYNIRTDSWTTVTSMTTPRCYVGATVLR 253
Score = 80.4 bits (199), Expect = 6e-20
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 4 GWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSI 63
G+ + + VE Y W + + KR + +IYV+GG +G S+
Sbjct: 22 GFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRS-RLSSV 80
Query: 64 ECYDVDNDS---WEIMSHLPSARSWLGCVPLQ 92
EC D D W ++ + R G L
Sbjct: 81 ECLDYTADEDGVWYSVAPMNVRRGLAGATTLG 112
Score = 80.0 bits (198), Expect = 6e-20
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 8 STENTNRVECYHIAEN---TWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIE 64
+ VEC + W +PM +R G + IYV GG +G H S+E
Sbjct: 73 GRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGS-RRHTSME 131
Query: 65 CYDVDNDSWEIMSHLPSARSWLGCVPL 91
YD + D W ++ + +AR G V
Sbjct: 132 RYDPNIDQWSMLGDMQTAREGAGLVVA 158
Score = 56.5 bits (137), Expect = 3e-11
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 31 MKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCV 89
M+ R R + + + V+GG D +E YD W + + R ++ V
Sbjct: 2 MQGPRTRARLGA-NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV 59
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 98.2 bits (245), Expect = 1e-26
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 4 GWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSI 63
G + TNRV Y+ + W+ +PMK R G+A+ GKI + GG DG S+
Sbjct: 166 GKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTE-DGLSASV 224
Query: 64 ECYDVDNDSWEIMSHLPSARSWLGCVPLQ 92
E +D+ + WE+M+ P RS + V L
Sbjct: 225 EAFDLKTNKWEVMTEFPQERSSISLVSLA 253
Score = 91.6 bits (228), Expect = 3e-24
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 4 GWHASTENT-NRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDS 62
G TE + + V CY W + K Y + +G IY LGG+ +
Sbjct: 117 GKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176
Query: 63 IECYDVDNDSWEIMSHLPSARSWLGCV 89
+ Y+ W+ ++ + + RS G
Sbjct: 177 VFIYNPKKGDWKDLAPMKTPRSMFGVA 203
Score = 80.5 bits (199), Expect = 5e-20
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 4 GWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGW-DGYHDS 62
+ + + W P+ R G+ +D KIYV+ G++ + DS
Sbjct: 69 EENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDS 128
Query: 63 IECYDVDNDSWEIMSHLPSARSWLGCVPL 91
+ CYD W + +LP +
Sbjct: 129 VLCYDPVAAKWSEVKNLPIKVYGHNVISH 157
Score = 79.7 bits (197), Expect = 1e-19
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 4 GWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG----- 58
G + VE + + N WE + ++R + + G +Y +GG
Sbjct: 214 GVTEDGL-SASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEF 272
Query: 59 ---YHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 92
+ I Y+ D W M S C+ +
Sbjct: 273 APTEVNDIWKYEDDKKEWAGMLKEIRYASGASCLATR 309
Score = 69.3 bits (170), Expect = 7e-16
Identities = 17/85 (20%), Positives = 24/85 (28%), Gaps = 6/85 (7%)
Query: 13 NRVECYHIAENTWEY-KSPMKEKRYRPGIAVIDGKIYVLGGEE-----GWDGYHDSIECY 66
Y EN + R I ++YV+GG
Sbjct: 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQL 83
Query: 67 DVDNDSWEIMSHLPSARSWLGCVPL 91
D + W + LPSAR G +
Sbjct: 84 DNVSSEWVGLPPLPSARCLFGLGEV 108
Score = 45.4 bits (108), Expect = 3e-07
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 11 NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVL 50
N + Y + W +KE RY G + + ++ +
Sbjct: 276 EVNDIWKYEDDKKEWA--GMLKEIRYASGASCLATRLNLF 313
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 95.5 bits (238), Expect = 1e-25
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 6 HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIEC 65
+ + N VE Y + TW + +PMK +R GI V G+IYVLGG +G + DS+EC
Sbjct: 224 YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG-HTFLDSVEC 282
Query: 66 YDVDNDSWEIMSHLPSARSWLGCV 89
YD D D+W ++ + S RS +G
Sbjct: 283 YDPDTDTWSEVTRMTSGRSGVGVA 306
Score = 91.6 bits (228), Expect = 4e-24
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 13 NRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 72
N VE Y + W +PM +R G+AV++ +Y +GG +G +S ECY + +
Sbjct: 137 NSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT-NRLNSAECYYPERNE 195
Query: 73 WEIMSHLPSARSWLGCVPL 91
W +++ + + RS G L
Sbjct: 196 WRMITAMNTIRSGAGVCVL 214
Score = 89.7 bits (223), Expect = 2e-23
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 4 GWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSI 63
G T N ECY+ N W + M R G+ V+ IY GG +G +S+
Sbjct: 175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDG-QDQLNSV 233
Query: 64 ECYDVDNDSWEIMSHLPSARSWLGCVPLQ 92
E YDV+ ++W ++ + RS LG Q
Sbjct: 234 ERYDVETETWTFVAPMKHRRSALGITVHQ 262
Score = 86.2 bits (214), Expect = 4e-22
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 12 TNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDND 71
++ ++CY+ N W +PM R R G+ VIDG IY +GG G +H+S+E Y+ + D
Sbjct: 89 SSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERD 147
Query: 72 SWEIMSHLPSARSWLGCVPL 91
W +++ + + R +G L
Sbjct: 148 EWHLVAPMLTRRIGVGVAVL 167
Score = 78.9 bits (195), Expect = 2e-19
Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 8 STENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG---YHDSIE 64
++ + +E Y+ + TW + ++ R V+ G +Y +GG +++
Sbjct: 34 FRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALD 93
Query: 65 CYDVDNDSWEIMSHLPSARSWLGCVPLQ 92
CY+ + W + + R+ +G +
Sbjct: 94 CYNPMTNQWSPCAPMSVPRNRIGVGVID 121
Score = 55.0 bits (133), Expect = 1e-10
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 21 AENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP 80
+ + + S R + IY GG +E Y+ N +W ++ L
Sbjct: 2 SSHHHHHHSSGLVPRGSHA-PKVGRLIYTAGGYFR--QSLSYLEAYNPSNGTWLRLADLQ 58
Query: 81 SARSWLGCVPL 91
RS L +
Sbjct: 59 VPRSGLAGCVV 69
Score = 37.7 bits (88), Expect = 2e-04
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 9 TENTNRVECYHIAENTWEYKSPMKEKRYRPGIAV 42
+ VECY +TW + M R G+AV
Sbjct: 274 HTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 94.7 bits (236), Expect = 2e-25
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 4 GWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSI 63
G + + N++ Y + W+ +PM+ R G V DG+I V G G S
Sbjct: 156 GKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTD-TGLTSSA 214
Query: 64 ECYDVDNDSWEIMSHLPSARSWLGCVPLQ 92
E Y + ++ W P RS L V L
Sbjct: 215 EVYSITDNKWAPFEAFPQERSSLSLVSLV 243
Score = 89.0 bits (221), Expect = 3e-23
Identities = 17/79 (21%), Positives = 30/79 (37%)
Query: 13 NRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 72
+ V CY W P+ Y + +YV+GG+ + + YD
Sbjct: 117 DSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176
Query: 73 WEIMSHLPSARSWLGCVPL 91
W+ ++ + +ARS G
Sbjct: 177 WKELAPMQTARSLFGATVH 195
Score = 84.7 bits (210), Expect = 2e-21
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 9 TENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG--------YH 60
T T+ E Y I +N W ++R + + G +Y +GG +
Sbjct: 208 TGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTEL 267
Query: 61 DSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 92
+ I Y+ + WE + + + +P++
Sbjct: 268 NDIWRYNEEEKKWEGVLREIAYAAGATFLPVR 299
Score = 83.6 bits (207), Expect = 4e-21
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Query: 8 STENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG--YHDSIEC 65
+ + ++ W P+ R G+ IYV+GG E DG DS+ C
Sbjct: 62 EDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMC 121
Query: 66 YDVDNDSWEIMSHLPSARSWLGCVPL 91
YD + W LP +
Sbjct: 122 YDRLSFKWGESDPLPYVVYGHTVLSH 147
Score = 68.2 bits (167), Expect = 2e-15
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 6/83 (7%)
Query: 15 VECYHIAENTWEYKS-PMKEKRYRPGIAVIDGKIYVLGGEEG-----WDGYHDSIECYDV 68
Y A N S + + + + +++V GG D +D
Sbjct: 15 AVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDH 74
Query: 69 DNDSWEIMSHLPSARSWLGCVPL 91
+ W M LPS R G
Sbjct: 75 LDSEWLGMPPLPSPRCLFGLGEA 97
Score = 50.1 bits (120), Expect = 6e-09
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 6 HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEG 55
N + Y+ E WE Y G + ++ VL +
Sbjct: 261 ELVPTELNDIWRYNEEEKKWEGVLREI--AYAAGATFLPVRLNVLRLTKM 308
Score = 34.3 bits (79), Expect = 0.002
Identities = 5/48 (10%), Positives = 14/48 (29%), Gaps = 9/48 (18%)
Query: 43 IDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH-LPSARSWLGCV 89
+ I+++ + YD + S ++ + V
Sbjct: 3 LQDLIFMISE--------EGAVAYDPAANECYCASLSSQVPKNHVSLV 42
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 94.7 bits (236), Expect = 2e-25
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 4 GWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSI 63
G + S N E Y A TW PM E R G+ + KI+ +GG+ G G D++
Sbjct: 160 GNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNG-LGGLDNV 218
Query: 64 ECYDVDNDSWEIMSHLPSARSWLGCVPLQ 92
E YD+ + W+++S +P + C +
Sbjct: 219 EYYDIKLNEWKMVSPMPWKGVTVKCAAVG 247
Score = 92.0 bits (229), Expect = 3e-24
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 4 GWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYH--- 60
G ECY +W K M +R G+ +G IYV GG G +
Sbjct: 109 GSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVL 168
Query: 61 DSIECYDVDNDSWEIMSHLPSARSWLGCVPL 91
+S E YD ++W + + AR G V +
Sbjct: 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV 199
Score = 90.1 bits (224), Expect = 1e-23
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 6 HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIEC 65
+ VE Y I N W+ SPM K A + +YVL G +G G I
Sbjct: 209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQG-VGRLGHILE 267
Query: 66 YDVDNDSWEIMSHLPSARSWLGCV 89
Y+ + D W S + + +
Sbjct: 268 YNTETDKWVANSKVRAFPVTSCLI 291
Score = 86.2 bits (214), Expect = 4e-22
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 12 TNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDND 71
R++CY++ +++W K R +GKIY GG E + ECYD +
Sbjct: 69 IKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTE 128
Query: 72 SWEIMSHLPSARSWLGCVPLQ 92
SW + + R G V
Sbjct: 129 SWHTKPSMLTQRCSHGMVEAN 149
Score = 82.0 bits (203), Expect = 2e-20
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 10 ENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVD 69
++ + +W EKR D +Y+LGG + ++CY+V
Sbjct: 21 SQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQL--FPIKRMDCYNVV 78
Query: 70 NDSWEIMSHLPSARSWLGCVPL 91
DSW P+ R L
Sbjct: 79 KDSWYSKLGPPTPRDSLAACAA 100
Score = 48.1 bits (115), Expect = 3e-08
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 35 RYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCV 89
RP D +I + GG S ++ + SW + R CV
Sbjct: 3 GTRPRRKKHDYRIALFGGS-----QPQSCRYFNPKDYSWTDIRCPFEKRRDAACV 52
Score = 36.5 bits (85), Expect = 4e-04
Identities = 5/50 (10%), Positives = 13/50 (26%), Gaps = 3/50 (6%)
Query: 6 HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEG 55
+ Y+ + W S ++ + + + G E
Sbjct: 256 FQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLICV---VDTCGANEE 302
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 90.4 bits (225), Expect = 8e-24
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 7 ASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECY 66
AS + + VECY+ N W Y + M +R G+ V++ +Y +GG +G S+E Y
Sbjct: 167 ASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDG-PLVRKSVEVY 225
Query: 67 DVDNDSWEIMSHLPSARSWLGCVPLQ 92
D ++W ++ + R G +
Sbjct: 226 DPTTNAWRQVADMNMCRRNAGVCAVN 251
Score = 90.4 bits (225), Expect = 8e-24
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 6 HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIEC 65
H VE Y N W + M R G+ ++G +YV+GG++G S+E
Sbjct: 213 HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDG-SCNLASVEY 271
Query: 66 YDVDNDSWEIM-SHLPSARSWLGCV 89
Y+ D W ++ S + + RS+ G
Sbjct: 272 YNPTTDKWTVVSSCMSTGRSYAGVT 296
Score = 90.0 bits (224), Expect = 1e-23
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 13 NRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG-YHDSIECYDVDND 71
+ VE Y+I N W + +PM +R G+ V+ G +Y +GG + ++ECY+ +
Sbjct: 124 SSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTN 183
Query: 72 SWEIMSHLPSARSWLGCVPL 91
W ++ + + RS G L
Sbjct: 184 EWTYIAEMSTRRSGAGVGVL 203
Score = 85.0 bits (211), Expect = 8e-22
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 STENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYD 67
+ V+ Y ++ W + M+++R G AV++G +Y +GG +G S+E Y+
Sbjct: 72 GSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYN 130
Query: 68 VDNDSWEIMSHLPSARSWLGCVPL 91
+ ++ W ++ + + RS +G +
Sbjct: 131 IKSNEWFHVAPMNTRRSSVGVGVV 154
Score = 82.3 bits (204), Expect = 8e-21
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 STENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYD 67
+ + VECY E W + + +R R G+ + G ++ +GG G +++ YD
Sbjct: 25 APKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNG-SLRVRTVDSYD 83
Query: 68 VDNDSWEIMSHLPSARSWLGCVPL 91
D W ++++ RS LG L
Sbjct: 84 PVKDQWTSVANMRDRRSTLGAAVL 107
Score = 41.1 bits (97), Expect = 9e-06
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 9 TENTNRVECYHIAENTWEYKSP-MKEKRYRPGIAVIDGKI 47
+ N VE Y+ + W S M R G+ VID ++
Sbjct: 263 SCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 58.4 bits (141), Expect = 7e-12
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 2/85 (2%)
Query: 4 GWHASTENTNRVECYHIAENTW-EYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDS 62
T+ N V Y+ N+W + S V +GK YV GG + ++
Sbjct: 77 NSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQ-NIFNGY 135
Query: 63 IECYDVDNDSWEIMSHLPSARSWLG 87
E + + + +
Sbjct: 136 FEDLNEAGKDSTAIDKINAHYFDKK 160
Score = 57.6 bits (139), Expect = 1e-11
Identities = 10/81 (12%), Positives = 22/81 (27%), Gaps = 3/81 (3%)
Query: 12 TNRVECYHIAENTWEYKSPM-KEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDN 70
+ + + W Y + K +++ GE D++ D
Sbjct: 167 NKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTG 226
Query: 71 --DSWEIMSHLPSARSWLGCV 89
W ++ + S G
Sbjct: 227 NNLKWNKLAPVSSPDGVAGGF 247
Score = 57.3 bits (138), Expect = 2e-11
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 11 NTNRVEC--YHIAENTWEYKSPM-KEKRYRPGIAVIDGKIYVLGG----EEGWDGYHDSI 63
+ W + R + A IDG +YV GG EG + +
Sbjct: 29 AGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDV 88
Query: 64 ECYDVDNDSW-EIMSHLPSARSWLGCVPLQ 92
Y+ +SW ++MSH P +
Sbjct: 89 HKYNPKTNSWVKLMSHAPMGMAGHVTFVHN 118
Score = 56.1 bits (135), Expect = 5e-11
Identities = 14/109 (12%), Positives = 26/109 (23%), Gaps = 20/109 (18%)
Query: 4 GWHASTENTNRVECYHIAE--NTWEYKSPMKEKRYRPGI--AVIDGKIYVLGGEEGWDG- 58
G T+ V W +P+ G + + + GG
Sbjct: 208 GEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSR 267
Query: 59 ---------------YHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 92
S + + N W+ L R++ +P
Sbjct: 268 ENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWN 316
Score = 49.9 bits (119), Expect = 7e-09
Identities = 7/71 (9%), Positives = 21/71 (29%)
Query: 5 WHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIE 64
H + + + + W+ + + R + + ++GGE
Sbjct: 277 AHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSV 336
Query: 65 CYDVDNDSWEI 75
V ++ +
Sbjct: 337 LITVKDNKVTV 347
Score = 44.9 bits (106), Expect = 5e-07
Identities = 8/87 (9%), Positives = 18/87 (20%), Gaps = 16/87 (18%)
Query: 4 GWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSI 63
G + + N E + A + + ++ +
Sbjct: 126 GVNQNIFN-GYFEDLNEAGKDSTAIDKINAHYFDKKAE--------------DYFFNKFL 170
Query: 64 ECYDVDNDSWEIMSHLP-SARSWLGCV 89
+D W P + V
Sbjct: 171 LSFDPSTQQWSYAGESPWYGTAGAAVV 197
Score = 38.4 bits (89), Expect = 1e-04
Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 8/65 (12%)
Query: 30 PMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVD--NDSWEIMSHLP-SARSWL 86
A+ + +Y+ G G + D + W ++ P R
Sbjct: 5 ETPVPFKSGTGAIDNDTVYIGLGSAG-----TAWYKLDTQAKDKKWTALAAFPGGPRDQA 59
Query: 87 GCVPL 91
+
Sbjct: 60 TSAFI 64
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 47.3 bits (111), Expect = 6e-08
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 3 RGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHD 61
+ + + Y + ++W M+ R A + DG+++ +GG +
Sbjct: 255 QIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEK 314
Query: 62 SIECYDVDNDSWEIMSHLPSAR 83
+ E Y + +W + +
Sbjct: 315 NGEVYSPSSKTWTSLPNAKVNP 336
Score = 45.3 bits (106), Expect = 4e-07
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 7 ASTENTNRVECY--HIAENTWEYKSPMKEKRYRP-GIAVIDGKIYVLGGEEGWDGYHDS- 62
+T N + + + NT + + R + + DG ++ GG+ + DS
Sbjct: 426 DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485
Query: 63 ----IECYDVDNDSWEIMSHLPSARSW 85
E Y + D++ + R +
Sbjct: 486 PVFTPEIYVPEQDTFYKQNPNSIVRVY 512
Score = 35.3 bits (80), Expect = 0.001
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 15 VECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGY--HDSIECYD 67
E Y ++T+ ++P R I+++ DG+++ GG D H + +
Sbjct: 490 PEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFT 546
Score = 31.9 bits (71), Expect = 0.016
Identities = 13/90 (14%), Positives = 22/90 (24%), Gaps = 8/90 (8%)
Query: 4 GWHASTENTNRVECYHIAENTWEYKSPMKEKRYRP----GIAVIDGKIYVLGGEEGW--- 56
G + E Y + TW K G+ D ++ G ++G
Sbjct: 305 GSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQ 364
Query: 57 -DGYHDSIECYDVDNDSWEIMSHLPSARSW 85
Y + + S R
Sbjct: 365 AGPSTAMNWYYTSGSGDVKSAGKRQSNRGV 394
Score = 30.7 bits (68), Expect = 0.047
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 16/97 (16%)
Query: 11 NTNRVECYHIAENTWEYKSPMKEKRYRPGIAV---------IDGKIYVLGGEEGWDGYHD 61
+T Y + + R A+ + GKI GG +
Sbjct: 368 STAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 427
Query: 62 SIECYDVD-------NDSWEIMSHLPSARSWLGCVPL 91
+ + + ++ + L AR++ V L
Sbjct: 428 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVL 464
Score = 28.4 bits (62), Expect = 0.32
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 5 WHASTENTNRVECYHIAENTWEYKSPM--KEKRYRPGIAVI-DGKIYVLGGEEGWDGYHD 61
+ S + + ++ K + PGI++ +G+I V GG +
Sbjct: 211 FGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA-----K 265
Query: 62 SIECYDVDNDSWEIMSHLPSARSWLGCVPL 91
YD +DSW + AR + +
Sbjct: 266 KTSLYDSSSDSWIPGPDMQVARGYQSSATM 295
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 45.5 bits (107), Expect = 3e-07
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 44 DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSW 85
+ ++ ++GG + +D+ W ++ L R
Sbjct: 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR 492
Score = 42.8 bits (100), Expect = 2e-06
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 8/84 (9%)
Query: 4 GWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDS 62
G A + + + + W + R+R + DG + +LGG
Sbjct: 459 GRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAML-- 516
Query: 63 IECYDVDNDSW---EIMSHLPSAR 83
Y+V + +
Sbjct: 517 --LYNVTEEIFKDVTPKDEFFQNS 538
Score = 35.5 bits (81), Expect = 0.001
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 13/96 (13%)
Query: 4 GWHASTENTNRVECYHIAENTWEYK-------SPMKEKRYRPGIAVI-DGKIYVLGG--E 53
G+ T +++ + +RY I I K+ ++GG
Sbjct: 559 GFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSP 618
Query: 54 EGWDGYHDSIECYDVDNDSW---EIMSHLPSARSWL 86
G +SI D +++ I + S +
Sbjct: 619 SGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLM 654
Score = 34.3 bits (78), Expect = 0.002
Identities = 13/116 (11%), Positives = 29/116 (25%), Gaps = 27/116 (23%)
Query: 3 RGWHASTE-------------NTNRVECYHIAENTWEYKSPMKEKRYRPG------IAVI 43
R H++ + Y++ E ++ +P E +
Sbjct: 490 RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549
Query: 44 DGKIYVLGGEEGWDGYH-DSIECYDVDNDSWE-------IMSHLPSARSWLGCVPL 91
+ +LGG D + D ++ + H R +
Sbjct: 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI 605
Score = 34.3 bits (78), Expect = 0.002
Identities = 10/93 (10%), Positives = 25/93 (26%), Gaps = 10/93 (10%)
Query: 1 MLRGWHASTENTNRVECYHIAENTWE--YKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG 58
+ + ++ + + R + V ++ +GG
Sbjct: 352 KEFAFTQGFLFDRSISEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGG--SNPY 409
Query: 59 YHDSIECYDVDNDSWEI------MSHLPSARSW 85
+ I + D ++ S +P AR
Sbjct: 410 RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC 442
Score = 25.1 bits (54), Expect = 3.8
Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 8/55 (14%)
Query: 6 HASTENTNRVECYHIAENTWEYKSPMKEKRYRPG--------IAVIDGKIYVLGG 52
+ TN + T + ++ G I+++GG
Sbjct: 619 SGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 25.7 bits (57), Expect = 2.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 29 SPMKEKRYRPGIAVIDGKIYVLGG 52
P +RYRPG + G + + G
Sbjct: 30 QPETLRRYRPGDPPLAGSLLIGGS 53
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; 2.20A {Eubacterium eligens}
Length = 138
Score = 25.0 bits (54), Expect = 3.3
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 4/25 (16%)
Query: 31 MKEKRYRPGIAV-IDGKIYVLGGEE 54
M K V + GK+ LGG E
Sbjct: 4 MSSKNT---AEVILGGKVIKLGGYE 25
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism,
ATP-binding, ligase, nucleotide-binding, biosynthesis;
HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Length = 725
Score = 24.5 bits (54), Expect = 6.5
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 31 MKEKRYRPGIAVIDGKIYVLGGEEGWDGYH 60
++E+ + A + IY G + G DG
Sbjct: 181 LREEHLKRSRASLGRPIYYAGAKTGRDGIG 210
>3tej_A Enterobactin synthase component F; nonribosomal peptide,
thioesterase, carrier domain, ATP- BIN enterobactin
biosynthesis, ION transport, iron; HET: UF0; 1.90A
{Escherichia coli} PDB: 2roq_A
Length = 329
Score = 24.3 bits (53), Expect = 6.7
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 12/53 (22%)
Query: 35 RYRPGIAVIDGKIYVL----------GGEEGWDGYHDSIECYDVDNDSWEIMS 77
DGK + E W + ++ Y D +I+S
Sbjct: 262 TAHSV--PFDGKATLFVAERTLQEGMSPERAWSPWIAELDIYRQDCAHVDIIS 312
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease,
hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP:
b.66.1.1 PDB: 1rtg_A
Length = 218
Score = 23.8 bits (51), Expect = 8.9
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 66 YDVDNDSWEIMSHLPSARSWLGC 88
++N S + + WLGC
Sbjct: 196 LKLENQSLKSVKFGSIKSDWLGC 218
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.465
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,563,385
Number of extensions: 80550
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 75
Length of query: 92
Length of database: 6,701,793
Length adjustment: 59
Effective length of query: 33
Effective length of database: 5,054,454
Effective search space: 166796982
Effective search space used: 166796982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)