BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2982
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L7H|A Chain A, Insights Into Dynein Assembly From A Dynein Intermediate
Chain Light Chain Roadblock Structure
pdb|3L7H|B Chain B, Insights Into Dynein Assembly From A Dynein Intermediate
Chain Light Chain Roadblock Structure
pdb|3L7H|C Chain C, Insights Into Dynein Assembly From A Dynein Intermediate
Chain Light Chain Roadblock Structure
pdb|3L7H|D Chain D, Insights Into Dynein Assembly From A Dynein Intermediate
Chain Light Chain Roadblock Structure
pdb|3L9K|A Chain A, Insights Into Dynein Assembly From A Dynein Intermediate
Cha Chain Roadblock Structure
pdb|3L9K|B Chain B, Insights Into Dynein Assembly From A Dynein Intermediate
Cha Chain Roadblock Structure
pdb|3L9K|C Chain C, Insights Into Dynein Assembly From A Dynein Intermediate
Cha Chain Roadblock Structure
pdb|3L9K|D Chain D, Insights Into Dynein Assembly From A Dynein Intermediate
Cha Chain Roadblock Structure
Length = 97
Score = 145 bits (365), Expect = 5e-35, Method: Composition-based stats.
Identities = 64/87 (73%), Positives = 79/87 (90%)
Query: 156 MSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVRE 215
MS E+EETLKRIQSH+GV G IV+N +GIP+K+TLDN TTVQYAGL+SQL DKA+SVVR+
Sbjct: 1 MSQEVEETLKRIQSHKGVVGTIVVNNEGIPVKSTLDNTTTVQYAGLMSQLADKARSVVRD 60
Query: 216 IDATNDLTFLRLRSKKNEIMIAPDKQF 242
+D +ND+TFLR+RSKK+EIM+APDK F
Sbjct: 61 LDPSNDMTFLRVRSKKHEIMVAPDKDF 87
>pdb|1Y4O|A Chain A, Solution Structure Of A Mouse Cytoplasmic RoadblockLC7
Dynein Light Chain
pdb|1Y4O|B Chain B, Solution Structure Of A Mouse Cytoplasmic RoadblockLC7
Dynein Light Chain
Length = 104
Score = 127 bits (319), Expect = 1e-29, Method: Composition-based stats.
Identities = 56/87 (64%), Positives = 71/87 (81%)
Query: 156 MSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVRE 215
+ E+EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+ + KA+S VRE
Sbjct: 8 LEAEVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYANLMHNFILKARSTVRE 67
Query: 216 IDATNDLTFLRLRSKKNEIMIAPDKQF 242
ID NDLTFLR+RSKKNEIM+APDK +
Sbjct: 68 IDPQNDLTFLRIRSKKNEIMVAPDKDY 94
>pdb|2B95|A Chain A, Solution Nmr Structure Of Protein Dynein Light Chain 2a,
Cytoplasmic; Northeast Structural Genomics Consortium
Target Hr2106
pdb|2B95|B Chain B, Solution Nmr Structure Of Protein Dynein Light Chain 2a,
Cytoplasmic; Northeast Structural Genomics Consortium
Target Hr2106
Length = 106
Score = 125 bits (314), Expect = 5e-29, Method: Composition-based stats.
Identities = 55/84 (65%), Positives = 70/84 (83%)
Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
E+EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+ + KA+S VR+ID
Sbjct: 13 EVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDP 72
Query: 219 TNDLTFLRLRSKKNEIMIAPDKQF 242
NDLTFLR+RSKKNEIM+APDK +
Sbjct: 73 QNDLTFLRIRSKKNEIMVAPDKDY 96
>pdb|1Z09|A Chain A, Solution Structure Of Km23
pdb|1Z09|B Chain B, Solution Structure Of Km23
Length = 96
Score = 125 bits (314), Expect = 5e-29, Method: Composition-based stats.
Identities = 55/84 (65%), Positives = 70/84 (83%)
Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
E+EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+ + KA+S VR+ID
Sbjct: 3 EVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDP 62
Query: 219 TNDLTFLRLRSKKNEIMIAPDKQF 242
NDLTFLR+RSKKNEIM+APDK +
Sbjct: 63 QNDLTFLRIRSKKNEIMVAPDKDY 86
>pdb|2E8J|A Chain A, Solution Structure Of Dynein Light Chain 2a
pdb|2E8J|B Chain B, Solution Structure Of Dynein Light Chain 2a
Length = 101
Score = 125 bits (314), Expect = 5e-29, Method: Composition-based stats.
Identities = 55/84 (65%), Positives = 70/84 (83%)
Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
E+EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+ + KA+S VR+ID
Sbjct: 8 EVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDP 67
Query: 219 TNDLTFLRLRSKKNEIMIAPDKQF 242
NDLTFLR+RSKKNEIM+APDK +
Sbjct: 68 QNDLTFLRIRSKKNEIMVAPDKDY 91
>pdb|2HZ5|A Chain A, Crystal Structure Of Human Dynein Light Chain Dnlc2a
pdb|2HZ5|B Chain B, Crystal Structure Of Human Dynein Light Chain Dnlc2a
Length = 106
Score = 125 bits (314), Expect = 5e-29, Method: Composition-based stats.
Identities = 55/84 (65%), Positives = 70/84 (83%)
Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
E+EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+ + KA+S VR+ID
Sbjct: 13 EVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDP 72
Query: 219 TNDLTFLRLRSKKNEIMIAPDKQF 242
NDLTFLR+RSKKNEIM+APDK +
Sbjct: 73 QNDLTFLRIRSKKNEIMVAPDKDY 96
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 15/17 (88%), Gaps = 1/17 (5%)
Query: 95 FIG-GPVLIRAAWYTAG 110
+IG GPVL+R AWYT+G
Sbjct: 39 YIGYGPVLVRLAWYTSG 55
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 15/17 (88%), Gaps = 1/17 (5%)
Query: 308 FIG-GPVLIRAAWYTAG 323
+IG GPVL+R AWYT+G
Sbjct: 39 YIGYGPVLVRLAWYTSG 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,920,873
Number of Sequences: 62578
Number of extensions: 384048
Number of successful extensions: 1008
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1000
Number of HSP's gapped (non-prelim): 9
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)