Query psy2982
Match_columns 443
No_of_seqs 331 out of 1163
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 22:31:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1630|consensus 100.0 1.9E-32 4E-37 260.9 9.0 152 260-443 152-310 (336)
2 KOG4115|consensus 100.0 1.1E-31 2.3E-36 222.1 10.3 94 157-250 2-95 (97)
3 KOG1629|consensus 99.9 5.9E-27 1.3E-31 216.4 15.4 195 3-218 20-222 (235)
4 KOG1630|consensus 99.9 8.2E-28 1.8E-32 229.3 9.3 217 1-220 106-333 (336)
5 PRK10447 HflBKC-binding inner 99.9 5.9E-24 1.3E-28 203.9 14.2 196 5-220 16-217 (219)
6 COG0670 Integral membrane prot 99.9 9.7E-24 2.1E-28 204.3 13.0 196 4-217 18-227 (233)
7 KOG1629|consensus 99.9 2E-23 4.3E-28 193.1 8.7 137 259-436 56-199 (235)
8 PRK10447 HflBKC-binding inner 99.8 3.5E-21 7.5E-26 184.8 9.8 130 260-430 54-188 (219)
9 cd06181 BI-1-like BAX inhibito 99.8 1.4E-19 3.1E-24 172.4 14.7 202 6-217 2-210 (212)
10 COG0670 Integral membrane prot 99.8 1.6E-19 3.4E-24 175.0 10.8 137 248-428 56-197 (233)
11 PF01027 Bax1-I: Inhibitor of 99.7 5.3E-17 1.2E-21 152.8 12.9 201 7-215 1-204 (205)
12 cd06181 BI-1-like BAX inhibito 99.7 1.8E-17 3.8E-22 158.0 8.5 136 259-431 44-180 (212)
13 PF01027 Bax1-I: Inhibitor of 99.6 2.2E-15 4.8E-20 141.8 9.6 142 259-435 40-182 (205)
14 PF03259 Robl_LC7: Roadblock/L 99.3 9.1E-12 2E-16 102.1 9.9 88 160-248 2-90 (91)
15 KOG2322|consensus 99.3 2.8E-12 6.1E-17 122.9 6.2 154 240-436 73-228 (237)
16 KOG2322|consensus 99.1 2.8E-10 6.1E-15 109.3 7.3 171 7-185 45-219 (237)
17 COG2018 Uncharacterized distan 96.9 0.0071 1.5E-07 53.2 9.4 91 158-249 3-96 (119)
18 PF12811 BaxI_1: Bax inhibitor 96.0 0.14 3E-06 51.4 13.3 74 80-154 118-200 (274)
19 PF12811 BaxI_1: Bax inhibitor 79.8 31 0.00068 34.8 12.3 41 290-330 115-163 (274)
20 PF09941 DUF2173: Uncharacteri 55.2 39 0.00084 29.5 6.1 48 164-211 3-52 (108)
21 PF08923 MAPKK1_Int: Mitogen-a 47.2 75 0.0016 28.0 6.7 32 159-190 2-34 (119)
22 PF14362 DUF4407: Domain of un 43.5 1.7E+02 0.0036 29.4 9.6 45 122-170 76-120 (301)
23 COG4760 Predicted membrane pro 40.7 3.6E+02 0.0079 26.4 12.3 132 7-151 52-195 (276)
24 KOG4107|consensus 39.8 1.4E+02 0.003 26.1 6.9 49 156-205 3-52 (125)
25 PRK15243 transcriptional regul 39.2 54 0.0012 33.0 5.3 60 155-217 30-89 (297)
26 PF12876 Cellulase-like: Sugar 37.4 15 0.00032 30.1 0.8 60 164-224 2-62 (88)
27 KOG2662|consensus 35.9 69 0.0015 34.1 5.5 41 195-235 306-346 (414)
28 PRK15015 carbon starvation pro 34.2 7.7E+02 0.017 28.3 15.4 102 41-147 186-299 (701)
29 PF02836 Glyco_hydro_2_C: Glyc 29.4 1.3E+02 0.0028 29.9 6.1 45 158-220 108-152 (298)
30 PF10144 SMP_2: Bacterial viru 28.6 59 0.0013 31.5 3.4 83 156-239 70-155 (210)
31 PF10787 YfmQ: Uncharacterised 28.3 3.7E+02 0.0081 24.7 8.1 83 141-231 9-101 (149)
32 TIGR03339 phn_lysR aminoethylp 26.5 1.4E+02 0.0031 28.3 5.8 60 155-217 23-82 (279)
33 TIGR00798 mtc tricarboxylate c 26.2 1.4E+02 0.003 30.9 5.6 67 103-186 144-211 (318)
34 CHL00180 rbcR LysR transcripti 23.1 1.8E+02 0.004 28.5 5.9 60 155-217 31-90 (305)
35 PRK11242 DNA-binding transcrip 22.0 2.3E+02 0.005 27.3 6.3 59 155-216 27-85 (296)
36 PRK11246 hypothetical protein; 21.6 59 0.0013 31.8 1.9 84 157-241 71-157 (218)
37 PF07341 DUF1473: Protein of u 21.3 36 0.00078 31.1 0.4 17 427-443 110-127 (163)
38 PF03820 Mtc: Tricarboxylate c 20.7 2.2E+02 0.0048 29.2 5.9 65 104-186 137-201 (308)
39 TIGR03418 chol_sulf_TF putativ 20.5 1.4E+02 0.003 29.0 4.3 57 155-214 27-83 (291)
No 1
>KOG1630|consensus
Probab=99.97 E-value=1.9e-32 Score=260.91 Aligned_cols=152 Identities=59% Similarity=1.045 Sum_probs=134.9
Q ss_pred hhhHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHHhhhhhhhhhccCccHHHHHHHHHHHHHHHHhhcchhhhhhh
Q psy2982 260 LTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGAFKIGQGAVAGGA 339 (443)
Q Consensus 260 ~~~~~sl~~~ig~~~~~~s~~~~~~~~~~~~~~~~ft~~~G~~l~pl~~~~~~~i~~A~~~Ta~if~~lS~~~~~~a~~~ 339 (443)
++.++.+++|+++++..|+++|++.+++||++|.+|++.+|+.++|+|+.++|++.+|+++|++|+|++|. ++-|+
T Consensus 152 va~~~tla~mi~sG~larsi~Yq~g~gaKhLAW~lHc~vlGAV~APlc~lgGPiLtrAa~YTaGIVGgLSt----vA~cA 227 (336)
T KOG1630|consen 152 VAIGVTLAAMIGSGMLARSIEYQPGPGAKHLAWLLHCGVLGAVVAPLCFLGGPILTRAAWYTAGIVGGLST----VAACA 227 (336)
T ss_pred HHHHHHHHHHHhcchhhhcccCCCCccHHHHHHHHHHHHHHHHHhhHHhcccHHHHHHHHHHccccchhhh----hhhcC
Confidence 46778999999999999999999999999999999999999999999999999999999999999999998 44332
Q ss_pred ----hhhhhhhhhhhccccccccchhhccccccceeeehhhhhHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHH
Q psy2982 340 ----VLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLFS 415 (443)
Q Consensus 340 ----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~g~~l~~~~~~~~~l~n~F~~~~~~~~~~~~~~~~y~gllvf~ 415 (443)
|+.||+++.+|++ ++++.+++++|+||++++|+.+.++++|+|+++||
T Consensus 228 PSeKFL~MggPLaiGlG----------------------------vVFvssl~sm~LPPtta~GA~LaSmslYGGLiLFS 279 (336)
T KOG1630|consen 228 PSEKFLNMGGPLAIGLG----------------------------VVFVSSLGSMFLPPTTALGAGLASMSLYGGLILFS 279 (336)
T ss_pred cHHHHhhcCCCceeeee----------------------------eEehhhhhhhhcCCchhhhhhhHHHHHhccHHHHH
Confidence 5555555554442 34688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhCCCC--cc-CCCCCC
Q psy2982 416 GFLLYDTQKIITRAERTPPY--VT-YDPVNA 443 (443)
Q Consensus 416 g~ilyDTQ~Ii~~~~~~~~~--~~-~dpi~~ 443 (443)
||+||||||++|++|.+|.| .+ |||||+
T Consensus 280 ~FLLYDTQr~vk~ae~ypq~s~~~~~dPin~ 310 (336)
T KOG1630|consen 280 GFLLYDTQRVVKSAEKYPQYSEFPNYDPINA 310 (336)
T ss_pred HHHHHhHHHHHHHHHhCcchhccCCCCchHH
Confidence 99999999999999999975 34 999984
No 2
>KOG4115|consensus
Probab=99.97 E-value=1.1e-31 Score=222.13 Aligned_cols=94 Identities=63% Similarity=0.995 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhcccccccceee
Q psy2982 157 STEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIMI 236 (443)
Q Consensus 157 S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~Ei~I 236 (443)
++++||+++|++++|||.|++|.|++|+|+||++|++.+++||+++.+|+.+||++|||+||+|||+|||+||||||+||
T Consensus 2 ~~~vEe~~~R~qs~~gV~giiv~d~~GvpikTt~d~~~t~~ya~~l~~L~~kars~VrdlDpsn~LtflRlRTkk~Eimv 81 (97)
T KOG4115|consen 2 SAEVEETLKRLQSYKGVTGIIVVDNAGVPIKTTLDNTTTQQYAALLHPLVEKARSVVRDLDPSNDLTFLRLRTKKHEIMV 81 (97)
T ss_pred cHHHHHHHHHHhccCCceeEEEECCCCcEeEeccCchHHHHHHHHHHHHHHHHHHHHHccCCcCceEEEEEeeccceEEE
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEeecch
Q psy2982 237 APDKQFILIITTNE 250 (443)
Q Consensus 237 a~~~~~~l~Vvqn~ 250 (443)
+||++|+++|+||+
T Consensus 82 ap~~~~~iiVVQ~~ 95 (97)
T KOG4115|consen 82 APDEDFTIIVVQNP 95 (97)
T ss_pred cCCCCEEEEEEecC
Confidence 99999999999997
No 3
>KOG1629|consensus
Probab=99.95 E-value=5.9e-27 Score=216.44 Aligned_cols=195 Identities=25% Similarity=0.270 Sum_probs=172.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHH
Q psy2982 3 PQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALH 82 (443)
Q Consensus 3 p~~vr~~l~~vY~~ma~~l~~ta~~A~~~~~~~~~~~~~~~~~~l~~~~~l~l~~~l~~~~~~~s~~~~~~~~~~~~~~f 82 (443)
.|+||+|+||||..++.++..||.+||.++... ..+.+..++.+++++++.+ .++ +...|..++++|
T Consensus 20 sP~vq~HLkkvY~tl~~~~~asA~GAylhM~~n-------igG~lsalg~l~~miwl~~----~py--~hk~rl~lL~~f 86 (235)
T KOG1629|consen 20 SPAVQNHLKKVYLTLALALFASAAGAYLHMVWN-------IGGLLSALGSLGLMIWLMF----TPY--EHKTRLGLLFLF 86 (235)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhh-------ccchHHHHHHHHHHHHHhC----CCC--ccchhHHHHHHH
Confidence 589999999999999999999999999977533 3456788899999999876 222 334599999999
Q ss_pred HHHhhhhhhhhh----ccCcchHHHHHHHHHHHHHHHhHhhhhcCCcccccchhHHHHHHHHHHHHhhhhhhhccccchH
Q psy2982 83 SALVGAVVAPIC----FIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMST 158 (443)
Q Consensus 83 s~l~G~tL~pi~----~~~~~~I~~Af~~Ta~iF~~lS~~g~~Tk~d~l~~lG~~L~~gli~liiaslvn~F~~l~l~S~ 158 (443)
+++.|.++||++ ..+|+++.+||.+||.+|.|+|+.|+.++|++|+|+||.|.+|+..+...++.|.|+ .|.
T Consensus 87 a~l~GasvGP~i~~~ididpsIliTAf~GTav~F~cfSasAmlArrreYLylGg~L~s~~s~l~wl~l~n~~f----gS~ 162 (235)
T KOG1629|consen 87 AFLTGASVGPLIKFCIDIDPSILITAFVGTAVIFVCFSASAMLARRREYLYLGGLLSSGLSLLLWLSLANSFF----GSI 162 (235)
T ss_pred HHHcCCcccchhhheeccChHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHh----hHH
Confidence 999999999999 368999999999999999999999999999999999999999999999999999995 565
Q ss_pred HHHHHHHHHhhccc---eeEEEEEecCCceEEEecCchhHHHHH-HHHHHHHHHHHHHhhhcCC
Q psy2982 159 EIEETLKRIQSHRG---VAGVIVINGDGIPIKTTLDNQTTVQYA-GLVSQLVDKAKSVVREIDA 218 (443)
Q Consensus 159 ~ve~~l~rI~~~~g---V~GvvIf~~~GipIkst~d~~~~~~yA-~li~~lv~~Ars~vr~LDp 218 (443)
.+. +.+.|-| .+|++++|+|-|++|..-+|+|.+||+ +++.|++...++.+..+-.
T Consensus 163 ~v~----~~qLY~Gllvfvg~ivvdTQ~IiEKah~GdmDyv~Hsl~lf~dfvsvF~riLiIl~~ 222 (235)
T KOG1629|consen 163 WVF----KFQLYVGLLVFVGFIVVDTQEIIEKAHHGDMDYVQHSLDLFTDFVSVFRRILIILAM 222 (235)
T ss_pred HHH----HHHHHHHHHHhheeEEeeHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444 3477777 789999999999999999999999999 9999999999998877643
No 4
>KOG1630|consensus
Probab=99.95 E-value=8.2e-28 Score=229.26 Aligned_cols=217 Identities=47% Similarity=0.834 Sum_probs=188.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHH
Q psy2982 1 LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWA 80 (443)
Q Consensus 1 ~wp~~vr~~l~~vY~~ma~~l~~ta~~A~~~~~~~~~~~~~~~~~~l~~~~~l~l~~~l~~~~~~~s~~~~~~~~~~~~~ 80 (443)
+||+|||+++..||.+++.++.+||+.|...++++.+++++..++|+..+++++++++..+..|+++++++++.|++.|.
T Consensus 106 iWPqyVrdRI~sTYay~~gS~~lTA~savA~~rs~~lm~l~~rgg~va~~~tla~mi~sG~larsi~Yq~g~gaKhLAW~ 185 (336)
T KOG1630|consen 106 IWPQYVRDRIHSTYAYLAGSCGLTAASAVAISRSPALMNLMMRGGWVAIGVTLAAMIGSGMLARSIEYQPGPGAKHLAWL 185 (336)
T ss_pred ccHHHHHHHHHHHHHHHhccHHHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHhcchhhhcccCCCCccHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred HHHHHhhhhhhhhhccCcchHHHHHHHHHHHHHHHhHhhhhcCCcccccchhHHHHHHHHHHHHhhhhhhhccccchHHH
Q psy2982 81 LHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEI 160 (443)
Q Consensus 81 ~fs~l~G~tL~pi~~~~~~~I~~Af~~Ta~iF~~lS~~g~~Tk~d~l~~lG~~L~~gli~liiaslvn~F~~l~l~S~~v 160 (443)
++++..|..++|+++.++++..+|.++|++|.|++|..+.|+++|||++||+||.+|+.+++++|+..+|+| ..+.+
T Consensus 186 lHc~vlGAV~APlc~lgGPiLtrAa~YTaGIVGgLStvA~cAPSeKFL~MggPLaiGlGvVFvssl~sm~LP---Ptta~ 262 (336)
T KOG1630|consen 186 LHCGVLGAVVAPLCFLGGPILTRAAWYTAGIVGGLSTVAACAPSEKFLNMGGPLAIGLGVVFVSSLGSMFLP---PTTAL 262 (336)
T ss_pred HHHHHHHHHHhhHHhcccHHHHHHHHHHccccchhhhhhhcCcHHHHhhcCCCceeeeeeEehhhhhhhhcC---Cchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974 44555
Q ss_pred HHHHHHHhhccc---eeEEEEEecCCc-------eEEEecCchhHHHHH-HHHHHHHHHHHHHhhhcCCCC
Q psy2982 161 EETLKRIQSHRG---VAGVIVINGDGI-------PIKTTLDNQTTVQYA-GLVSQLVDKAKSVVREIDATN 220 (443)
Q Consensus 161 e~~l~rI~~~~g---V~GvvIf~~~Gi-------pIkst~d~~~~~~yA-~li~~lv~~Ars~vr~LDp~d 220 (443)
-..+..+..|.| +.|.+++|+|-+ |.-+.+.+-|..+++ ....|..+..-+.+.++..++
T Consensus 263 GA~LaSmslYGGLiLFS~FLLYDTQr~vk~ae~ypq~s~~~~~dPin~~msiymdvlnifiriv~il~ggq 333 (336)
T KOG1630|consen 263 GAGLASMSLYGGLILFSGFLLYDTQRVVKSAEKYPQYSEFPNYDPINACMSIYMDVLNIFIRIVMILGGGQ 333 (336)
T ss_pred hhhhHHHHHhccHHHHHHHHHHhHHHHHHHHHhCcchhccCCCCchHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 666767777765 556666666432 233445555556666 556677777777666666544
No 5
>PRK10447 HflBKC-binding inner membrane protein; Provisional
Probab=99.91 E-value=5.9e-24 Score=203.87 Aligned_cols=196 Identities=17% Similarity=0.144 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHH
Q psy2982 5 YVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSA 84 (443)
Q Consensus 5 ~vr~~l~~vY~~ma~~l~~ta~~A~~~~~~~~~~~~~~~~~~l~~~~~l~l~~~l~~~~~~~s~~~~~~~~~~~~~~fs~ 84 (443)
..+||+||||.+++++++.|+++|++....+ ....+.++.+++.+++++. .++. +|++.+..+.++|++
T Consensus 16 ~~~~~Lr~vY~lLa~tl~~aa~ga~v~~~~~----~~~~~~~~~~~~~~gl~~~----~~~~---~~~~~~~~llf~fT~ 84 (219)
T PRK10447 16 STHKVLRNTYFLLSLTLAFSAITATASTVLM----LPSPGLILTLVGMYGLMFL----TYKT---ANKPTGILSAFAFTG 84 (219)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHH----HHHH---HcCCHHHHHHHHHHH
Confidence 4789999999999999999999999865321 1112223344556665553 2222 135689999999999
Q ss_pred Hhhhhhhhhhc-c----CcchHHHHHHHHHHHHHHHhHhhhhcCCcccccchhHHHHHHHHHHHHhhhhhhhccccchHH
Q psy2982 85 LVGAVVAPICF-I----GGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTE 159 (443)
Q Consensus 85 l~G~tL~pi~~-~----~~~~I~~Af~~Ta~iF~~lS~~g~~Tk~d~l~~lG~~L~~gli~liiaslvn~F~~l~l~S~~ 159 (443)
++|.+++|++. | +|++|.+||.+|+++|+++|++|++|||| +++||++|++|++++++++++|+|+ +++.
T Consensus 85 ~~G~~lg~i~~~y~~~~~~~iV~~A~~~Ta~iF~~ls~~a~~tk~D-fs~lg~~L~~~l~~li~~~l~~~F~----~s~~ 159 (219)
T PRK10447 85 FLGYILGPILNTYLSAGMGDVIALALGGTALVFFCCSAYVLTTRKD-MSFLGGMLMAGIVVVLIGMVANIFL----QLPA 159 (219)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHH----ccHH
Confidence 99999999993 3 46899999999999999999999999999 9999999999999999999999996 5554
Q ss_pred HHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHH-HHHHHHHHHHHHHhhhcCCCC
Q psy2982 160 IEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYA-GLVSQLVDKAKSVVREIDATN 220 (443)
Q Consensus 160 ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA-~li~~lv~~Ars~vr~LDp~d 220 (443)
++.++.-+-.- =.+|++++|+|-++ | .++|+..++| +++.|+++...+.+|.+...|
T Consensus 160 ~~~~~s~~g~l-lfsgyilyDTq~Ii-~--~g~~dyi~aAl~LYlDiinlFl~lL~il~~~~ 217 (219)
T PRK10447 160 LHLAISAVFIL-ISSGAILFETSNII-H--GGETNYIRATVSLYVSLYNIFVSLLSILGFAS 217 (219)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHH-c--CCchHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 54443222111 27899999998776 2 3677888888 999999999999999886543
No 6
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=99.90 E-value=9.7e-24 Score=204.27 Aligned_cols=196 Identities=18% Similarity=0.191 Sum_probs=150.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-hh-hHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHH
Q psy2982 4 QYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVS-GN-SMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWAL 81 (443)
Q Consensus 4 ~~vr~~l~~vY~~ma~~l~~ta~~A~~~~~~~~~~~~~~-~~-~~l~~~~~l~l~~~l~~~~~~~s~~~~~~~~~~~~~~ 81 (443)
+..|++++|||.||+++++.|+++|+.....+...+... +. .|+..+++++++++++...+| |.+.+...++.
T Consensus 18 ~~~~~f~~~vY~~~~~~L~~t~~~a~~~~~~~~~~~~~~~~~~~~vl~~a~l~~~~~~~~~~~~-----s~~~~~~~~~~ 92 (233)
T COG0670 18 LGLNTFLRKVYLLLALGLLVTAVGAALAAYLLFNLGLLSLSPPGFVLIIAGLAGVFFLSRKINK-----SSPTALILFFV 92 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhcc-----CcchHHHHHHH
Confidence 467899999999999999999999998655443322101 11 245788889998888876665 24588899999
Q ss_pred HHHHhhhhhhhhh-ccCc----chHHHHHHHHHHHHHHHhHhhhhcCCcccccchhHHHHHHHHHHHHhhhhhhhccccc
Q psy2982 82 HSALVGAVVAPIC-FIGG----PVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIM 156 (443)
Q Consensus 82 fs~l~G~tL~pi~-~~~~----~~I~~Af~~Ta~iF~~lS~~g~~Tk~d~l~~lG~~L~~gli~liiaslvn~F~~l~l~ 156 (443)
|++++|.+++|++ .|.+ ..|.+||++|+++|+++|++|++|||| ++.+|++|+||+++++++|++|+|+ +
T Consensus 93 ~t~l~G~tL~~i~~~Y~~~~~~~~i~~af~~t~~~F~~ls~~g~~tk~D-ls~l~~~l~~aligLiiasvvn~Fl----~ 167 (233)
T COG0670 93 YTALVGLTLSPILLVYAAISGGDAIAAAFGITALVFGALSLYGYTTKRD-LSSLGSFLFMALIGLIIASLVNIFL----G 167 (233)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHH----c
Confidence 9999999999999 4443 459999999999999999999999999 9999999999999999999999995 6
Q ss_pred hHHHHHHHHHHhhccceeEEEEEec------CCceEEEecCchhHHHHH-HHHHHHHHHHHHHhhhcC
Q psy2982 157 STEIEETLKRIQSHRGVAGVIVING------DGIPIKTTLDNQTTVQYA-GLVSQLVDKAKSVVREID 217 (443)
Q Consensus 157 S~~ve~~l~rI~~~~gV~GvvIf~~------~GipIkst~d~~~~~~yA-~li~~lv~~Ars~vr~LD 217 (443)
|+..+..+ ++.|++++.+ +-+.-+ +..++....-| .++.|++....+.+|.+-
T Consensus 168 s~~l~~~I-------S~lgvlifsgli~yDtq~I~~~-~~~~~~~i~~AlsLYldfiNlF~~LL~i~g 227 (233)
T COG0670 168 SSALHLAI-------SVLGVLIFSGLIAYDTQNIKRM-EGGERLAIMGALSLYLDFINLFLSLLRILG 227 (233)
T ss_pred CcHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666665 4446666543 221111 22333344444 788999999999988764
No 7
>KOG1629|consensus
Probab=99.89 E-value=2e-23 Score=193.14 Aligned_cols=137 Identities=31% Similarity=0.408 Sum_probs=115.3
Q ss_pred hhhhHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHHhhhhhhhhh----ccCccHHHHHHHHHHHHHHHHhhcchh
Q psy2982 259 NLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPIC----FIGGPVLIRAAWYTAGIVGAFKIGQGA 334 (443)
Q Consensus 259 ~~~~~~sl~~~ig~~~~~~s~~~~~~~~~~~~~~~~ft~~~G~~l~pl~----~~~~~~i~~A~~~Ta~if~~lS~~~~~ 334 (443)
.++-+|+++.|++.. .+||+++. +..++++|+++.|+++||++ ..+|+++.+||.+|+.+|.|+|+
T Consensus 56 ~lsalg~l~~miwl~----~~py~hk~--rl~lL~~fa~l~GasvGP~i~~~ididpsIliTAf~GTav~F~cfSa---- 125 (235)
T KOG1629|consen 56 LLSALGSLGLMIWLM----FTPYEHKT--RLGLLFLFAFLTGASVGPLIKFCIDIDPSILITAFVGTAVIFVCFSA---- 125 (235)
T ss_pred hHHHHHHHHHHHHHh----CCCCccch--hHHHHHHHHHHcCCcccchhhheeccChHHHHHHHHhhHHHHHHHHH----
Confidence 456778988888765 47765444 33488999999999999988 57999999999999999999998
Q ss_pred hhhhhhhhhhhhhhhhccccccccchhhccccccceeeehhhhhH--HHHHHHHHHHhhcCCccchhhHHHHHHHHHHHH
Q psy2982 335 VAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLV--NEELWIMLRSAFLPPTTALGAGLYSITLYGGLL 412 (443)
Q Consensus 335 ~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~g~~l~~--~~~~~~~l~n~F~~~~~~~~~~~~~~~~y~gll 412 (443)
.| ++ ++||+ |||+|+.+++ +.+.+.++.|.|++|. ..+...+|.|++
T Consensus 126 sA---------ml-----------Arrre------YLylGg~L~s~~s~l~wl~l~n~~fgS~-----~v~~~qLY~Gll 174 (235)
T KOG1629|consen 126 SA---------ML-----------ARRRE------YLYLGGLLSSGLSLLLWLSLANSFFGSI-----WVFKFQLYVGLL 174 (235)
T ss_pred HH---------HH-----------Hhhhh------hhhhhHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHH
Confidence 22 11 56776 9999999883 5678899999999986 678999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhCC-CCc
Q psy2982 413 LFSGFLLYDTQKIITRAERTP-PYV 436 (443)
Q Consensus 413 vf~g~ilyDTQ~Ii~~~~~~~-~~~ 436 (443)
+|+|||+||||+|+||+|++| ||+
T Consensus 175 vfvg~ivvdTQ~IiEKah~GdmDyv 199 (235)
T KOG1629|consen 175 VFVGFIVVDTQEIIEKAHHGDMDYV 199 (235)
T ss_pred HhheeEEeeHHHHHHHHhcCChHHH
Confidence 999999999999999999999 664
No 8
>PRK10447 HflBKC-binding inner membrane protein; Provisional
Probab=99.84 E-value=3.5e-21 Score=184.81 Aligned_cols=130 Identities=20% Similarity=0.103 Sum_probs=107.2
Q ss_pred hhhHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHHhhhhhhhhhc-c----CccHHHHHHHHHHHHHHHHhhcchh
Q psy2982 260 LTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICF-I----GGPVLIRAAWYTAGIVGAFKIGQGA 334 (443)
Q Consensus 260 ~~~~~sl~~~ig~~~~~~s~~~~~~~~~~~~~~~~ft~~~G~~l~pl~~-~----~~~~i~~A~~~Ta~if~~lS~~~~~ 334 (443)
+.+++++++++... ++++++.+.+++++||+++|.++||++. + +|++|.+|+..|+++|+|+|+|+
T Consensus 54 ~~~~~~~gl~~~~~-------~~~~~~~~~~llf~fT~~~G~~lg~i~~~y~~~~~~~iV~~A~~~Ta~iF~~ls~~a-- 124 (219)
T PRK10447 54 LTLVGMYGLMFLTY-------KTANKPTGILSAFAFTGFLGYILGPILNTYLSAGMGDVIALALGGTALVFFCCSAYV-- 124 (219)
T ss_pred HHHHHHHHHHHHHH-------HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHH--
Confidence 34456666666432 1246678888999999999999999992 3 56899999999999999999842
Q ss_pred hhhhhhhhhhhhhhhhccccccccchhhccccccceeeehhhhhHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHH
Q psy2982 335 VAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLF 414 (443)
Q Consensus 335 ~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~g~~l~~~~~~~~~l~n~F~~~~~~~~~~~~~~~~y~gllvf 414 (443)
+ ++|||++.||++|++|.+ +++++++.|+|++++ ..+.+..++|+++|
T Consensus 125 ----------------~-------~tk~Dfs~lg~~L~~~l~----~li~~~l~~~F~~s~-----~~~~~~s~~g~llf 172 (219)
T PRK10447 125 ----------------L-------TTRKDMSFLGGMLMAGIV----VVLIGMVANIFLQLP-----ALHLAISAVFILIS 172 (219)
T ss_pred ----------------H-------HHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHccH-----HHHHHHHHHHHHHH
Confidence 1 579999999999998886 557999999999875 67888889999999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy2982 415 SGFLLYDTQKIITRAE 430 (443)
Q Consensus 415 ~g~ilyDTQ~Ii~~~~ 430 (443)
|||++||||+|+|++|
T Consensus 173 sgyilyDTq~Ii~~g~ 188 (219)
T PRK10447 173 SGAILFETSNIIHGGE 188 (219)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 9999999999997644
No 9
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=99.82 E-value=1.4e-19 Score=172.37 Aligned_cols=202 Identities=22% Similarity=0.263 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhh---HHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHH
Q psy2982 6 VRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNS---MLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALH 82 (443)
Q Consensus 6 vr~~l~~vY~~ma~~l~~ta~~A~~~~~~~~~~~~~~~~~---~l~~~~~l~l~~~l~~~~~~~s~~~~~~~~~~~~~~f 82 (443)
.|+|++|||.++++++++|+++++.....+...+ ..+++ |+..+.+++.++.+... +. .+++.+.+..++.+|
T Consensus 2 ~~~fl~kVY~~l~~~l~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~-~~--~~~~~~~~~~ll~~f 77 (212)
T cd06181 2 RRGFLRKVYGLLALQLLVTALVAYLGMFSPPLRN-VLSNTPLGWLLLLAFLGLVILLFCC-RI--KRRSSPANLILLFLF 77 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHhccHHHHHHHHHHHHHHHHHHHH-HH--hccCHHHHHHHHHHH
Confidence 5899999999999999999999999877765443 22333 33445566655555441 21 123567899999999
Q ss_pred HHHhhhhhhhhh-ccCcchHHHHHHHHHHHHHHHhHhhhhcCCcccccchhHHHHHHHHHHHHhhhhhhhccccchHHHH
Q psy2982 83 SALVGAVVAPIC-FIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIE 161 (443)
Q Consensus 83 s~l~G~tL~pi~-~~~~~~I~~Af~~Ta~iF~~lS~~g~~Tk~d~l~~lG~~L~~gli~liiaslvn~F~~l~l~S~~ve 161 (443)
+.++|.+++|+. .+++..+.+|+.+|+++|++++++|++|||| ++++|+++.++++++++.++.|+|+ +++..+
T Consensus 78 t~~~g~~l~~~~~~~~~~~i~~A~~~T~~if~~l~l~a~~tk~d-~~~~g~~l~~~~~~l~~~~l~~~f~----~~~~~~ 152 (212)
T cd06181 78 TALMGVTLGPILSVYTAASVLQAFGITAAVFGGLSLYALTTKRD-FSFLGGFLFMGLIVLIVASLVNIFL----QSPALQ 152 (212)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHhHHHHHHHHHHHHHHHHHHHHHH----hcHHHH
Confidence 999999999999 5678889999999999999999999999999 9999999999999999999999995 454444
Q ss_pred HHHHHHhhccceeEEEEEecCCceEEEe--cCchhHHHHH-HHHHHHHHHHHHHhhhcC
Q psy2982 162 ETLKRIQSHRGVAGVIVINGDGIPIKTT--LDNQTTVQYA-GLVSQLVDKAKSVVREID 217 (443)
Q Consensus 162 ~~l~rI~~~~gV~GvvIf~~~GipIkst--~d~~~~~~yA-~li~~lv~~Ars~vr~LD 217 (443)
..+.-+-.- -.++.+++|.|-+.-+.+ .+++|...+| .+..|+++...+.+|.+.
T Consensus 153 ~~~~~~g~~-lf~~~l~~Dtq~i~~~~~~~~~~~d~i~~al~LylDiinlF~~iL~il~ 210 (212)
T cd06181 153 LAISALGVL-LFSGYILYDTQLIIGGYRLYLSPDDYILAALSLYLDIINLFLSLLRILG 210 (212)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 443211111 156777788765543332 4688999999 999999999999998764
No 10
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=99.80 E-value=1.6e-19 Score=174.99 Aligned_cols=137 Identities=23% Similarity=0.229 Sum_probs=111.5
Q ss_pred cchhHHHHHHhhhhhHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHHhhhhhhhhh-cc----CccHHHHHHHHHH
Q psy2982 248 TNELLLLYIDLNLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPIC-FI----GGPVLIRAAWYTA 322 (443)
Q Consensus 248 qn~~~~~~~~~~~~~~~sl~~~ig~~~~~~s~~~~~~~~~~~~~~~~ft~~~G~~l~pl~-~~----~~~~i~~A~~~Ta 322 (443)
++++| ..+.++..++.++....+ . ++|++.+...++.|++++|.+++|++ .| ++.++.+||.+|+
T Consensus 56 ~~~~~-----~~vl~~a~l~~~~~~~~~---~--~~s~~~~~~~~~~~t~l~G~tL~~i~~~Y~~~~~~~~i~~af~~t~ 125 (233)
T COG0670 56 SLSPP-----GFVLIIAGLAGVFFLSRK---I--NKSSPTALILFFVYTALVGLTLSPILLVYAAISGGDAIAAAFGITA 125 (233)
T ss_pred ccccH-----HHHHHHHHHHHHHHHHHH---h--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45555 456666777777765432 2 12667777889999999999999999 33 3467999999999
Q ss_pred HHHHHHhhcchhhhhhhhhhhhhhhhhhccccccccchhhccccccceeeehhhhhHHHHHHHHHHHhhcCCccchhhHH
Q psy2982 323 GIVGAFKIGQGAVAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGL 402 (443)
Q Consensus 323 ~if~~lS~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~g~~l~~~~~~~~~l~n~F~~~~~~~~~~~ 402 (443)
++|+++|+| |+ .+|||++..+++++||.+ |+++++++|+|++++ .+
T Consensus 126 ~~F~~ls~~-g~------------------------~tk~Dls~l~~~l~~ali----gLiiasvvn~Fl~s~-----~l 171 (233)
T COG0670 126 LVFGALSLY-GY------------------------TTKRDLSSLGSFLFMALI----GLIIASLVNIFLGSS-----AL 171 (233)
T ss_pred HHHHHHHHH-HH------------------------HHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHcCc-----HH
Confidence 999999984 22 568888889999999886 779999999999987 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2982 403 YSITLYGGLLLFSGFLLYDTQKIITR 428 (443)
Q Consensus 403 ~~~~~y~gllvf~g~ilyDTQ~Ii~~ 428 (443)
+.+..+.|+++|+|+|+||||||+|+
T Consensus 172 ~~~IS~lgvlifsgli~yDtq~I~~~ 197 (233)
T COG0670 172 HLAISVLGVLIFSGLIAYDTQNIKRM 197 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778899999999999999999996
No 11
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=99.72 E-value=5.3e-17 Score=152.80 Aligned_cols=201 Identities=19% Similarity=0.196 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHh
Q psy2982 7 RDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALV 86 (443)
Q Consensus 7 r~~l~~vY~~ma~~l~~ta~~A~~~~~~~~~~~~~~~~~~l~~~~~l~l~~~l~~~~~~~s~~~~~~~~~~~~~~fs~l~ 86 (443)
|+|++|||.+++.++.+|+++++.....|...+.-...+|...+++++..+......++.+ +.+.+.+...+..|+..+
T Consensus 1 ~~fl~kvy~~l~~~l~it~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~-~~~~~~~~~~~~~~t~~~ 79 (205)
T PF01027_consen 1 RQFLRKVYGLLALQLAITALGAFLVLASPLFLSQHFPLSWVSLIVSLVLLIFLYILFNRRR-RFPSNVALILLFIFTLLE 79 (205)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHH
Confidence 7999999999999999999999998776621111112335566677777744443332221 112345689999999999
Q ss_pred hhhhhhhhc-cCcchHHHHHHHHHHHHHHHhHhhhhcCCcccccchhHHHHHHHHHHHHhhhhhhhccccchHHHHHHHH
Q psy2982 87 GAVVAPICF-IGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIEETLK 165 (443)
Q Consensus 87 G~tL~pi~~-~~~~~I~~Af~~Ta~iF~~lS~~g~~Tk~d~l~~lG~~L~~gli~liiaslvn~F~~l~l~S~~ve~~l~ 165 (443)
|.+++|+.. +++..+.+|+..|+++|++++++++.||+| ++.+|+++.++++++++.+++|+|++ ++..+..+.
T Consensus 80 g~~~~~i~~~~~~~~v~~a~~~T~~if~~l~~~a~~~~~d-~~~~~~~l~~~l~~l~i~~l~~~f~~----~~~~~~~is 154 (205)
T PF01027_consen 80 GLLLGPISSFYDPSIVLQAFLLTAAIFIALTLYAFFTKRD-FTRWGGILFIGLIGLIIFGLVSIFLP----SSPLYLLIS 154 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcccchHHHHHHHHHHHHHHHHHHhc----chHHHHHHH
Confidence 999999994 579999999999999999999999999999 99999999999999999999999854 443443331
Q ss_pred HHhhccceeEEEEEecCCceEEEec-CchhHHHHH-HHHHHHHHHHHHHhhh
Q psy2982 166 RIQSHRGVAGVIVINGDGIPIKTTL-DNQTTVQYA-GLVSQLVDKAKSVVRE 215 (443)
Q Consensus 166 rI~~~~gV~GvvIf~~~GipIkst~-d~~~~~~yA-~li~~lv~~Ars~vr~ 215 (443)
.-..--..+.+++|.+ .+.|... .+|.+..+| +++.|++......+|.
T Consensus 155 -~~~~~lf~~~l~~Dt~-~i~~~~~~~~~~~i~~Al~Ly~d~i~lF~~iL~l 204 (205)
T PF01027_consen 155 -YIGILLFSLYLVYDTQ-RIIRRYFSPDDYAIIAALSLYLDIINLFLRILRL 204 (205)
T ss_pred -HHHHHHHHHHHHHHHH-HHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111114455667776 3333222 222247777 8889999888887764
No 12
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=99.71 E-value=1.8e-17 Score=157.98 Aligned_cols=136 Identities=24% Similarity=0.250 Sum_probs=108.6
Q ss_pred hhhhHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHHhhhhhhhhh-ccCccHHHHHHHHHHHHHHHHhhcchhhhh
Q psy2982 259 NLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPIC-FIGGPVLIRAAWYTAGIVGAFKIGQGAVAG 337 (443)
Q Consensus 259 ~~~~~~sl~~~ig~~~~~~s~~~~~~~~~~~~~~~~ft~~~G~~l~pl~-~~~~~~i~~A~~~Ta~if~~lS~~~~~~a~ 337 (443)
.++.+.++++++.... . ..+++++..+..++.+|+.++|.+++|++ .++++.+.+|+..|+++|+++++++
T Consensus 44 ~~~~~~~l~~~~~l~~-~--~~~~~~~~~~~~ll~~ft~~~g~~l~~~~~~~~~~~i~~A~~~T~~if~~l~l~a----- 115 (212)
T cd06181 44 WLLLLAFLGLVILLFC-C--RIKRRSSPANLILLFLFTALMGVTLGPILSVYTAASVLQAFGITAAVFGGLSLYA----- 115 (212)
T ss_pred HHHHHHHHHHHHHHHH-H--HHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3444455554443322 1 22345667788899999999999999999 5778889999999999999999831
Q ss_pred hhhhhhhhhhhhhccccccccchhhccccccceeeehhhhhHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHH
Q psy2982 338 GAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLFSGF 417 (443)
Q Consensus 338 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~g~~l~~~~~~~~~l~n~F~~~~~~~~~~~~~~~~y~gllvf~g~ 417 (443)
+ .+|||++.|+++++++.+ ++++.++.|+|++++ ..+.+..++|+++|++|
T Consensus 116 -------------~-------~tk~d~~~~g~~l~~~~~----~l~~~~l~~~f~~~~-----~~~~~~~~~g~~lf~~~ 166 (212)
T cd06181 116 -------------L-------TTKRDFSFLGGFLFMGLI----VLIVASLVNIFLQSP-----ALQLAISALGVLLFSGY 166 (212)
T ss_pred -------------H-------hccccHHhHHHHHHHHHH----HHHHHHHHHHHHhcH-----HHHHHHHHHHHHHHHHH
Confidence 1 457999999999988875 567899999999865 56788889999999999
Q ss_pred HHHHHHHHHhhhhh
Q psy2982 418 LLYDTQKIITRAER 431 (443)
Q Consensus 418 ilyDTQ~Ii~~~~~ 431 (443)
++||||+|+++.|.
T Consensus 167 l~~Dtq~i~~~~~~ 180 (212)
T cd06181 167 ILYDTQLIIGGYRL 180 (212)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999999985
No 13
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=99.60 E-value=2.2e-15 Score=141.82 Aligned_cols=142 Identities=27% Similarity=0.371 Sum_probs=108.2
Q ss_pred hhhhHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHHhhhhhhhhh-ccCccHHHHHHHHHHHHHHHHhhcchhhhh
Q psy2982 259 NLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPIC-FIGGPVLIRAAWYTAGIVGAFKIGQGAVAG 337 (443)
Q Consensus 259 ~~~~~~sl~~~ig~~~~~~s~~~~~~~~~~~~~~~~ft~~~G~~l~pl~-~~~~~~i~~A~~~Ta~if~~lS~~~~~~a~ 337 (443)
..+.++++++.+......+..+ +++++.+...+..|+.++|..++|++ .++++++.+|+..|+++|++++++ +
T Consensus 40 ~~~~i~~l~~~i~~~~~~~~~~-~~~~~~~~~~~~~~t~~~g~~~~~i~~~~~~~~v~~a~~~T~~if~~l~~~----a- 113 (205)
T PF01027_consen 40 WVSLIVSLVLLIFLYILFNRRR-RFPSNVALILLFIFTLLEGLLLGPISSFYDPSIVLQAFLLTAAIFIALTLY----A- 113 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-
Confidence 3455666666633222222222 12344556789999999999999999 567999999999999999999983 2
Q ss_pred hhhhhhhhhhhhhccccccccchhhccccccceeeehhhhhHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHH
Q psy2982 338 GAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLFSGF 417 (443)
Q Consensus 338 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~g~~l~~~~~~~~~l~n~F~~~~~~~~~~~~~~~~y~gllvf~g~ 417 (443)
. .+|+|++.|+++++++.. ++++.++.++|++++ ....+..+.|+++|+++
T Consensus 114 -------------~-------~~~~d~~~~~~~l~~~l~----~l~i~~l~~~f~~~~-----~~~~~is~~~~~lf~~~ 164 (205)
T PF01027_consen 114 -------------F-------FTKRDFTRWGGILFIGLI----GLIIFGLVSIFLPSS-----PLYLLISYIGILLFSLY 164 (205)
T ss_pred -------------H-------HHhhhhcccchHHHHHHH----HHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHH
Confidence 1 358999999999987765 668999999999865 34555568999999999
Q ss_pred HHHHHHHHHhhhhhCCCC
Q psy2982 418 LLYDTQKIITRAERTPPY 435 (443)
Q Consensus 418 ilyDTQ~Ii~~~~~~~~~ 435 (443)
++||||+|+|+++..|+|
T Consensus 165 l~~Dt~~i~~~~~~~~~~ 182 (205)
T PF01027_consen 165 LVYDTQRIIRRYFSPDDY 182 (205)
T ss_pred HHHHHHHHHHHHccchHH
Confidence 999999999877666554
No 14
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=99.32 E-value=9.1e-12 Score=102.10 Aligned_cols=88 Identities=30% Similarity=0.584 Sum_probs=82.7
Q ss_pred HHHHHHHHhhccceeEEEEEecCCceEEE-ecCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhcccccccceeecC
Q psy2982 160 IEETLKRIQSHRGVAGVIVINGDGIPIKT-TLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIMIAP 238 (443)
Q Consensus 160 ve~~l~rI~~~~gV~GvvIf~~~GipIks-t~d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~Ei~Ia~ 238 (443)
+|+.++++++.|||.|++++|.||.|+.+ ..+++++.++|.+..++...+++..++++ ++|++.+|+||++++++|.|
T Consensus 2 ~e~~l~~l~~~~gv~~~~l~~~dG~~i~~~~~~~~~~~~~aa~~a~~~~~~~~~~~~l~-~~~~~~v~i~~~~~~i~i~~ 80 (91)
T PF03259_consen 2 IEELLEELQSVPGVRGAVLVDKDGLVIASSGIDDDDAEKLAAMAASLLAAAEKLAKELG-EGELEQVRIETEKGEIIITP 80 (91)
T ss_dssp HHHHHHHHHHSTTEEEEEEEETTSEEEEETSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSEEEEEEEESSEEEEEEE
T ss_pred hHHHHHHHhCCCCeeEEEEEcCCCCEEEEecCCcccHHHHHHHHHHHHHHHHHHHHHhC-CCCcEEEEEEECCCEEEEEE
Confidence 68899999999999999999999999999 88999999999999999999999999999 99999999999999999999
Q ss_pred CCceEEEeec
Q psy2982 239 DKQFILIITT 248 (443)
Q Consensus 239 ~~~~~l~Vvq 248 (443)
.+++.+.+++
T Consensus 81 ~~~~~~L~v~ 90 (91)
T PF03259_consen 81 VGDFYLLVVL 90 (91)
T ss_dssp CSTCEEEEEE
T ss_pred cCCCEEEEEE
Confidence 9996665554
No 15
>KOG2322|consensus
Probab=99.30 E-value=2.8e-12 Score=122.92 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=113.7
Q ss_pred CceEEEeecchhHHHHHHhhhhhHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHHhhhhhhhhh-ccCccHHHHHH
Q psy2982 240 KQFILIITTNELLLLYIDLNLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPIC-FIGGPVLIRAA 318 (443)
Q Consensus 240 ~~~~l~Vvqn~~~~~~~~~~~~~~~sl~~~ig~~~~~~s~~~~~~~~~~~~~~~~ft~~~G~~l~pl~-~~~~~~i~~A~ 318 (443)
+...-+|.+|++.- ++.+.+..+..+.+.+.-+ +++++..+.+++..||..++.+.|-.+ ++++.+|..|+
T Consensus 73 ~~~~~~v~~~~~~~-~~~~~vf~vt~l~l~c~~~-------~r~k~P~N~ilL~iFT~a~s~~~g~~~a~~~~~~VL~Al 144 (237)
T KOG2322|consen 73 EPVQDFVRRNPALY-WALIVVFIVTYLSLACCEG-------LRRKSPVNLILLGIFTLAEAFMTGLVTAFYDAKVVLLAL 144 (237)
T ss_pred cHHHHHHHhCcHHH-HHHHHHHHHHHHHHHccCc-------ccccCcHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33345667788773 5555555555555554422 234566777788999999999999999 88999999999
Q ss_pred HHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhccccccccchhhccccccceeeehhhhhHHHHHHHHHHHhhcCCccch
Q psy2982 319 WYTAGIVGAFKIGQGAVAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTAL 398 (443)
Q Consensus 319 ~~Ta~if~~lS~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~g~~l~~~~~~~~~l~n~F~~~~~~~ 398 (443)
.+|+++++++++| |. .+|+||+..+++++.-++++ ++.+++-.+++...
T Consensus 145 ~IT~~V~~slt~~----t~---------------------qtK~DFt~~~~~l~~~l~vl----~~~g~I~~~f~~~~-- 193 (237)
T KOG2322|consen 145 IITTVVVLSLTLF----TL---------------------QTKYDFTSLGGFLFALLIVL----LLFGLIFLFFPYGP-- 193 (237)
T ss_pred HHHHhheeeEEEE----EE---------------------eeccchhhhhhHHHHHHHHH----HHHHHHHHHHhhHH--
Confidence 9999999999984 31 34799999999988776643 56666666666432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCC-CCc
Q psy2982 399 GAGLYSITLYGGLLLFSGFLLYDTQKIITRAERTP-PYV 436 (443)
Q Consensus 399 ~~~~~~~~~y~gllvf~g~ilyDTQ~Ii~~~~~~~-~~~ 436 (443)
.+..+....|.++||+|+.||||++++ |-.| +|+
T Consensus 194 --~~~~vya~lgAllf~~yl~~Dtqllm~--~~SPEEYI 228 (237)
T KOG2322|consen 194 --ILVMVYAALGALLFCGYLVYDTQLLMG--RISPEEYI 228 (237)
T ss_pred --HHHHHHHHHHHHHHhHHHHhhhHHHhc--cCCHHHHH
Confidence 566676668899999999999999999 4444 453
No 16
>KOG2322|consensus
Probab=99.06 E-value=2.8e-10 Score=109.27 Aligned_cols=171 Identities=15% Similarity=0.138 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH---HHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHH
Q psy2982 7 RDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLA---MFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHS 83 (443)
Q Consensus 7 r~~l~~vY~~ma~~l~~ta~~A~~~~~~~~~~~~~~~~~~l~---~~~~l~l~~~l~~~~~~~s~~~~~~~~~~~~~~fs 83 (443)
|.|+||||..++.=+++|.+.+.....++.+.++...|+|+. ++..+...+.+.- ..+ ++++.+.+..++..|+
T Consensus 45 ~~FiRKVYsIl~~QLl~T~~~~~~~~~~~~~~~~v~~~~~~~~~~~~vf~vt~l~l~c-~~~--~r~k~P~N~ilL~iFT 121 (237)
T KOG2322|consen 45 WGFIRKVYSILSIQLLITLAVVAIFTVHEPVQDFVRRNPALYWALIVVFIVTYLSLAC-CEG--LRRKSPVNLILLGIFT 121 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEEEEccHHHHHHHhCcHHHHHHHHHHHHHHHHHHc-cCc--ccccCcHHHhHHHHHH
Confidence 579999999999999999988877666667777777888653 3333333333222 232 3456789999999999
Q ss_pred HHhhhhhhhhh-ccCcchHHHHHHHHHHHHHHHhHhhhhcCCcccccchhHHHHHHHHHHHHhhhhhhhccccchHHHHH
Q psy2982 84 ALVGAVVAPIC-FIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIEE 162 (443)
Q Consensus 84 ~l~G~tL~pi~-~~~~~~I~~Af~~Ta~iF~~lS~~g~~Tk~d~l~~lG~~L~~gli~liiaslvn~F~~l~l~S~~ve~ 162 (443)
..++.+.+-.. .+.+-.|..|+.+|+++++++++|+..||+| |+..|+.+.+-++++++..+.-.+++..-....+..
T Consensus 122 ~a~s~~~g~~~a~~~~~~VL~Al~IT~~V~~slt~~t~qtK~D-Ft~~~~~l~~~l~vl~~~g~I~~~f~~~~~~~~vya 200 (237)
T KOG2322|consen 122 LAEAFMTGLVTAFYDAKVVLLALIITTVVVLSLTLFTLQTKYD-FTSLGGFLFALLIVLLLFGLIFLFFPYGPILVMVYA 200 (237)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhheeeEEEEEEeeccc-hhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999 6789999999999999999999999999999 999999999999999999944333322212233333
Q ss_pred HHHHHhhccceeEEEEEecCCce
Q psy2982 163 TLKRIQSHRGVAGVIVINGDGIP 185 (443)
Q Consensus 163 ~l~rI~~~~gV~GvvIf~~~Gip 185 (443)
.+.-| -+++++++|+|.+.
T Consensus 201 ~lgAl----lf~~yl~~Dtqllm 219 (237)
T KOG2322|consen 201 ALGAL----LFCGYLVYDTQLLM 219 (237)
T ss_pred HHHHH----HHhHHHHhhhHHHh
Confidence 33111 27889999987443
No 17
>COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]
Probab=96.92 E-value=0.0071 Score=53.16 Aligned_cols=91 Identities=23% Similarity=0.414 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhh-ccceeEEEEEecCCceEEEecC-chhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhccccccccee
Q psy2982 158 TEIEETLKRIQS-HRGVAGVIVINGDGIPIKTTLD-NQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIM 235 (443)
Q Consensus 158 ~~ve~~l~rI~~-~~gV~GvvIf~~~GipIkst~d-~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~Ei~ 235 (443)
+.+++.+..+.. -+||.|..|.+.||-||-+..+ +.++.++|.+.......+.+..++++ .+|+.-+-+|.||+.++
T Consensus 3 ~~l~~vL~~l~~~v~gv~ga~Ivs~DGL~ia~~~p~~~d~e~vaA~~a~~~g~~er~~~~l~-~g~leqi~I~g~~g~i~ 81 (119)
T COG2018 3 NMLDEVLLDLNRNVPGVRGALVVSKDGLPIAAELPGNVDAEIVAAMAATALGLAERAADELG-GGELEQIMIEGKKGKIL 81 (119)
T ss_pred hHHHHHHHHHHhhccCceEEEEEccCCceEeecCCCcccHHHHHHHHHHHHHHhHHHHHHhC-CCCceEEEEeccccEEE
Confidence 456777777777 9999999999999999999775 45789999999999999999988886 45688888999999988
Q ss_pred ecCCC-ceEEEeecc
Q psy2982 236 IAPDK-QFILIITTN 249 (443)
Q Consensus 236 Ia~~~-~~~l~Vvqn 249 (443)
+.+-+ +..+.++-.
T Consensus 82 l~~~g~~~il~~~a~ 96 (119)
T COG2018 82 LYDAGDDAILVVLAD 96 (119)
T ss_pred EEEcCCceEEEEEcC
Confidence 88877 445555443
No 18
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=95.99 E-value=0.14 Score=51.36 Aligned_cols=74 Identities=11% Similarity=-0.033 Sum_probs=59.5
Q ss_pred HHHHHHhhhhhhhhh-----cc---CcchHHHHHHHHHHHHHHHhHhhhhcCCcccc-cchhHHHHHHHHHHHHhhhhhh
Q psy2982 80 ALHSALVGAVVAPIC-----FI---GGPVLIRAAWYTAGIVGGLSTVAACAPSDKFL-TMGGPLAIGLGVVFASSIEFSY 150 (443)
Q Consensus 80 ~~fs~l~G~tL~pi~-----~~---~~~~I~~Af~~Ta~iF~~lS~~g~~Tk~d~l~-~lG~~L~~gli~liiaslvn~F 150 (443)
..|+.+.|+.+|-+- .+ .|.++.+|.+.|.++|++|-+ .|.|+.=|-+ .+-++.+.+..++.+.+++|+.
T Consensus 118 ~~YA~~EG~flG~iS~~f~~~~~~~~pGIv~qAvl~T~~vf~~ml~-lYk~g~IrvT~kf~~iv~~a~~gi~~~~Lv~~v 196 (274)
T PF12811_consen 118 PIYAVLEGVFLGGISAVFENIYYSRYPGIVFQAVLGTFGVFAVMLA-LYKTGIIRVTPKFRRIVMIATFGIALFYLVNLV 196 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH-HHHhCCeeechHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999774 12 378999999999999999876 7777653333 6778889999999999999988
Q ss_pred hccc
Q psy2982 151 TKLD 154 (443)
Q Consensus 151 ~~l~ 154 (443)
+.++
T Consensus 197 l~lf 200 (274)
T PF12811_consen 197 LSLF 200 (274)
T ss_pred HHHH
Confidence 6433
No 19
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=79.81 E-value=31 Score=34.78 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhhhhhhhh--c---c---CccHHHHHHHHHHHHHHHHhh
Q psy2982 290 IAWALHSALVGAVVAPIC--F---I---GGPVLIRAAWYTAGIVGAFKI 330 (443)
Q Consensus 290 ~~~~~ft~~~G~~l~pl~--~---~---~~~~i~~A~~~Ta~if~~lS~ 330 (443)
.+-..|+.++|..+|-+- + + .|.++.||.+.|.++|+++-+
T Consensus 115 ~l~~~YA~~EG~flG~iS~~f~~~~~~~~pGIv~qAvl~T~~vf~~ml~ 163 (274)
T PF12811_consen 115 ALAPIYAVLEGVFLGGISAVFENIYYSRYPGIVFQAVLGTFGVFAVMLA 163 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 334789999999999764 1 1 278999999999999999986
No 20
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=55.16 E-value=39 Score=29.48 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=36.0
Q ss_pred HHHHhhccceeEEEEEecCCceEEEe--cCchhHHHHHHHHHHHHHHHHH
Q psy2982 164 LKRIQSHRGVAGVIVINGDGIPIKTT--LDNQTTVQYAGLVSQLVDKAKS 211 (443)
Q Consensus 164 l~rI~~~~gV~GvvIf~~~GipIkst--~d~~~~~~yA~li~~lv~~Ars 211 (443)
++|+.+.|||.....|+.||.++... ++.+.++.-|..+..=....+-
T Consensus 3 l~~Lm~lpGv~AAg~Fs~~G~l~e~~G~l~~~~a~m~A~mc~An~~m~~m 52 (108)
T PF09941_consen 3 LDKLMKLPGVVAAGEFSDDGKLVEYKGELDEEMAEMLAKMCAANTRMGNM 52 (108)
T ss_pred HHHhhcCCCeEEEEEECCCCeEEeeecCCCHHHHHHHHHHHHHHHHHHHh
Confidence 68889999999999999999999774 5666677666666444444433
No 21
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=47.17 E-value=75 Score=28.02 Aligned_cols=32 Identities=22% Similarity=0.591 Sum_probs=22.7
Q ss_pred HHHHHHHH-HhhccceeEEEEEecCCceEEEec
Q psy2982 159 EIEETLKR-IQSHRGVAGVIVINGDGIPIKTTL 190 (443)
Q Consensus 159 ~ve~~l~r-I~~~~gV~GvvIf~~~GipIkst~ 190 (443)
++++-+++ ++..+|+++++|-|+||.|+-...
T Consensus 2 ~l~~~L~~ll~~v~Gl~~I~itDrDGvpi~~v~ 34 (119)
T PF08923_consen 2 ELKRFLQKLLSRVDGLQAIVITDRDGVPIAKVS 34 (119)
T ss_dssp HHHHHHHHHGGGSTTEEEEEEEETTS-EEEEEE
T ss_pred hHHHHHHHHHhccCCeEEEEEECCCCcEEEEec
Confidence 34444443 467789999999999999987744
No 22
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=43.50 E-value=1.7e+02 Score=29.37 Aligned_cols=45 Identities=18% Similarity=0.116 Sum_probs=30.4
Q ss_pred cCCcccccchhHHHHHHHHHHHHhhhhhhhccccchHHHHHHHHHHhhc
Q psy2982 122 APSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIEETLKRIQSH 170 (443)
Q Consensus 122 Tk~d~l~~lG~~L~~gli~liiaslvn~F~~l~l~S~~ve~~l~rI~~~ 170 (443)
+.++-+..+..+++..+++++|+...=+. +.++|+++-+++.+..
T Consensus 76 ~~~~~~~~~~R~~lAvliaivIs~pl~l~----iF~~eI~~~l~~~~~~ 120 (301)
T PF14362_consen 76 SRKRLLQALPRLLLAVLIAIVISEPLELK----IFEKEIDQKLDEIRQE 120 (301)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34443566777788888888888877554 5678887777654443
No 23
>COG4760 Predicted membrane protein [Function unknown]
Probab=40.75 E-value=3.6e+02 Score=26.43 Aligned_cols=132 Identities=16% Similarity=0.098 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHH
Q psy2982 7 RDRITSTYAYFGGSIVLSAASAYAVF-TSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSAL 85 (443)
Q Consensus 7 r~~l~~vY~~ma~~l~~ta~~A~~~~-~~~~~~~~~~~~~~l~~~~~l~l~~~l~~~~~~~s~~~~~~~~~~~~~~fs~l 85 (443)
....+||=..+++- +++++.+|... .+|.+ ......+-.++.++++....|. .+++++.- -..|+.+
T Consensus 52 ddvvtkTG~tLav~-~vtavvs~~~~lv~p~L---a~~ltlvGaiGGlilvLvatFg-----kK~~spai---~l~YAv~ 119 (276)
T COG4760 52 DDVVTKTGATLAVL-LVTAVVSFFLVLVNPAL---AMPLTLVGAIGGLILVLVATFG-----KKQWSPAI---VLSYAVL 119 (276)
T ss_pred cchhhhhhHHHHHH-HHHHHHHHHHHhcCHHh---cccHhHHHHhhhHHHHHHHHhc-----cccCChHH---HHHHHHH
Confidence 34456665555554 45666666543 33321 1111122345556666655552 22223222 2357888
Q ss_pred hhhhhhhhh-------cc---CcchHHHHHHHHHHHHHHHhHhhhhcCCccc-ccchhHHHHHHHHHHHHhhhhhhh
Q psy2982 86 VGAVVAPIC-------FI---GGPVLIRAAWYTAGIVGGLSTVAACAPSDKF-LTMGGPLAIGLGVVFASSIEFSYT 151 (443)
Q Consensus 86 ~G~tL~pi~-------~~---~~~~I~~Af~~Ta~iF~~lS~~g~~Tk~d~l-~~lG~~L~~gli~liiaslvn~F~ 151 (443)
-|+-++-+- .+ .+.+|.+|-+.|-++|-+|= +.|.|-.-|- -+.-..+..+..++.+-.+.|.-+
T Consensus 120 EGlFlGaiS~lla~ftV~~anaGgligqAvLgT~Gvf~gML-~vYktGaIkvTpkF~r~v~a~~~Gvl~L~Lgn~vl 195 (276)
T COG4760 120 EGLFLGAISFLLANFTVYEANAGGLIGQAVLGTFGVFFGML-VVYKTGAIKVTPKFTRMVVAATFGVLVLMLGNFVL 195 (276)
T ss_pred HHHHHHHHHHHhccceEEeccccceeHHHHHHHHHHHHHHH-HHHhcCceeecchhHHHHHHHHHHHHHHHHHHHHH
Confidence 888777665 12 36899999999999999984 4555432111 123455777888888888888664
No 24
>KOG4107|consensus
Probab=39.79 E-value=1.4e+02 Score=26.05 Aligned_cols=49 Identities=16% Similarity=0.385 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHhhccceeEEEEEecCCceEEEe-cCchhHHHHHHHHHHH
Q psy2982 156 MSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTT-LDNQTTVQYAGLVSQL 205 (443)
Q Consensus 156 ~S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst-~d~~~~~~yA~li~~l 205 (443)
+++.+.+++.+.. ..||.|..++|.||..+..+ ++++++.--|....+.
T Consensus 3 kpKALtqVLsQaN-TgGV~~tlLln~EG~LLAYsGygdkdarvtaAiasni 52 (125)
T KOG4107|consen 3 KPKALTQVLSQAN-TGGVDGTLLLNKEGLLLAYSGYGDKDARVTAAIASNI 52 (125)
T ss_pred ChHHHHHHHhhcc-cCCccceEEEcCCCcEEEecccCcchhHHHHHHHHHH
Confidence 4455555665543 34799999999999988775 5555555445544444
No 25
>PRK15243 transcriptional regulator SpvR; Provisional
Probab=39.20 E-value=54 Score=32.98 Aligned_cols=60 Identities=8% Similarity=-0.014 Sum_probs=49.8
Q ss_pred cchHHHHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHHHHHHHHHHHHHHHhhhcC
Q psy2982 155 IMSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREID 217 (443)
Q Consensus 155 l~S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA~li~~lv~~Ars~vr~LD 217 (443)
+-++.+...+++++.+- |+-+|++.|..++=|-..+...+||..+.+..+.++..+++..
T Consensus 30 isQpavS~~Ik~LE~eL---G~~LF~R~~r~~~LT~aG~~ll~~a~~il~~~~~~~~~~~~~~ 89 (297)
T PRK15243 30 ITRTPLSRVISDLEREL---KQRLFIRKNGTLIPTEFAQTIYRKVKSHYIFLHALEQEIGPTG 89 (297)
T ss_pred cCHHHHHHHHHHHHHHh---CCccEEeCCCCeeECHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45667778888888875 8889999999999898889999999888888888888777653
No 26
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=37.40 E-value=15 Score=30.08 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=36.3
Q ss_pred HHHHhhccceeEEEEEec-CCceEEEecCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcch
Q psy2982 164 LKRIQSHRGVAGVIVING-DGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTF 224 (443)
Q Consensus 164 l~rI~~~~gV~GvvIf~~-~GipIkst~d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~ 224 (443)
++|...++.|...=+.|. ++ .-..+++.+.....+..+.++.+.+-..+|++||+.-++.
T Consensus 2 v~~~~~~~~Il~Wdl~NE~p~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 2 VTRFGYDPRILAWDLWNEPPN-NWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp HHHTT-GGGEEEEESSTTTT--TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred chhhcCCCCEEEEEeecCCCC-cccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 456677888888888888 66 2222333333333556677888888888999999988775
No 27
>KOG2662|consensus
Probab=35.85 E-value=69 Score=34.06 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCcchhccccccccee
Q psy2982 195 TVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIM 235 (443)
Q Consensus 195 ~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~Ei~ 235 (443)
-..|-..+.+...|+.++...+|...|...+.+-.+++|+|
T Consensus 306 LEaYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~Li 346 (414)
T KOG2662|consen 306 LEAYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNELI 346 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhHHH
Confidence 45677888999999999999999999999999999988876
No 28
>PRK15015 carbon starvation protein A; Provisional
Probab=34.20 E-value=7.7e+02 Score=28.29 Aligned_cols=102 Identities=22% Similarity=0.109 Sum_probs=55.0
Q ss_pred HhhhhHH----HHHHHHHHHHHHHHhhhhcCCCCC-chhHH-HHHHHHHHHhhhhhh--hhh----ccCcchHHHHHHHH
Q psy2982 41 VSGNSML----AMFGSIALLMGSGMLVQSLEYKPG-FGAKQ-IAWALHSALVGAVVA--PIC----FIGGPVLIRAAWYT 108 (443)
Q Consensus 41 ~~~~~~l----~~~~~l~l~~~l~~~~~~~s~~~~-~~~~~-~~~~~fs~l~G~tL~--pi~----~~~~~~I~~Af~~T 108 (443)
+..+||- .+..++++.+|.- .++.++..- ...-. ..++..+...|...+ |+. -.++....-...+=
T Consensus 186 l~~sP~~~fsv~~tIpiAl~mG~~--l~~~r~g~v~~~SiiGvvll~~aI~~G~~~~~~p~~~~~f~l~~~~w~~~L~iY 263 (701)
T PRK15015 186 LTHSPWGTYTVAFTIPLALFMGIY--LRYLRPGRIGEVSVIGLVFLIFAIISGGWVAESPTWAPYFDFTGVQLTWMLVGY 263 (701)
T ss_pred HhhCcHHHHHHHHHHHHHHHHHHH--heeecCCchHHHHHHHHHHHHHHHHHhHhhccCchhhhhcccCHhHHHHHHHHH
Confidence 4566775 3333555555543 455544321 11222 233344445555542 653 12343333444444
Q ss_pred HHHHHHHhHhhhhcCCcccccchhHHHHHHHHHHHHhhh
Q psy2982 109 AGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIE 147 (443)
Q Consensus 109 a~iF~~lS~~g~~Tk~d~l~~lG~~L~~gli~liiaslv 147 (443)
+-+=..+-.+=+..||| |+.+++..|.+++....++
T Consensus 264 ~fiASvLPVWlLLqPRD---YLstfl~ig~i~llaiGil 299 (701)
T PRK15015 264 GFVAAVLPVWLLLAPRD---YLSTFLKIGTIVGLAVGIL 299 (701)
T ss_pred HHHHHHhHHHHHhCcHH---HHHHHHHHHHHHHHHHHHh
Confidence 44445678889999999 7788888877766655544
No 29
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=29.36 E-value=1.3e+02 Score=29.91 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy2982 158 TEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATN 220 (443)
Q Consensus 158 ~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA~li~~lv~~Ars~vr~LDp~d 220 (443)
.++++.++|..+||+|.-.-+.|.. . .....+.....++++||+-
T Consensus 108 ~~~~~~v~~~~NHPSIi~W~~gNE~--------------~----~~~~~~~l~~~~k~~DptR 152 (298)
T PF02836_consen 108 QELREMVRRDRNHPSIIMWSLGNES--------------D----YREFLKELYDLVKKLDPTR 152 (298)
T ss_dssp HHHHHHHHHHTT-TTEEEEEEEESS--------------H----HHHHHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHcCcCcCchheeecCccC--------------c----cccchhHHHHHHHhcCCCC
Confidence 5789999999999999888888763 2 2222334455577789874
No 30
>PF10144 SMP_2: Bacterial virulence factor haemolysin; InterPro: IPR019305 This entry represents a group of bacterial proteins that are membrane proteins that effect the expression of haemolysin under anaerobic conditions [].
Probab=28.64 E-value=59 Score=31.53 Aligned_cols=83 Identities=14% Similarity=0.253 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHHHHHHHHHHH--HHHHhhhcCCCC-Ccchhccccccc
Q psy2982 156 MSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDK--AKSVVREIDATN-DLTFLRLRSKKN 232 (443)
Q Consensus 156 ~S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA~li~~lv~~--Ars~vr~LDp~d-eL~~LRirTkk~ 232 (443)
..+.+++.++++.++|-|...-|+|.+|..+-.+-++-..+..-++=.+-... .+..|+.+..+| -+-|+|++-.+|
T Consensus 70 d~e~L~~ll~~L~~d~~VldAsIYd~~G~lLA~S~~~~~vr~~L~ld~~~~~~~~~qq~VepI~~~~~~~GflRiTld~~ 149 (210)
T PF10144_consen 70 DQEQLQQLLNQLAKDPFVLDASIYDADGVLLAQSGESVSVRERLGLDGPEAGSYGRQQIVEPIYSDDGPLGFLRITLDTQ 149 (210)
T ss_pred CHHHHHHHHHHHhcCCeEeEEEEECCCCCEEEEcCCCcchhhhhcCCcccccccCCceEEEEeccCCCeeEEEEEEEchh
Confidence 45678889999999999999999999999987764432211111100000000 123455554444 488999987655
Q ss_pred ceeecCC
Q psy2982 233 EIMIAPD 239 (443)
Q Consensus 233 Ei~Ia~~ 239 (443)
...++.
T Consensus 150 -~~~~~~ 155 (210)
T PF10144_consen 150 -YLQTES 155 (210)
T ss_pred -hhhhhH
Confidence 444443
No 31
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=28.28 E-value=3.7e+02 Score=24.67 Aligned_cols=83 Identities=17% Similarity=0.115 Sum_probs=45.0
Q ss_pred HHHHhhhhhhhccccchHHHHHHHHHHhhccceeE-EEEEecCCceEEEecCchhHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy2982 141 VFASSIEFSYTKLDIMSTEIEETLKRIQSHRGVAG-VIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDAT 219 (443)
Q Consensus 141 liiaslvn~F~~l~l~S~~ve~~l~rI~~~~gV~G-vvIf~~~GipIkst~d~~~~~~yA~li~~lv~~Ars~vr~LDp~ 219 (443)
+++.|+.-+. -..+.+..||..+.|.+.||-... ..-.+-+|. ..+.++-.|.-+.+.+=+-.-|. -+-|.
T Consensus 9 lvifs~lKil-vt~lPt~vVe~liskfe~H~kL~~~~~tVti~G~----~Lege~K~~~I~~FNeAiFLeky---Y~~P~ 80 (149)
T PF10787_consen 9 LVIFSALKIL-VTSLPTSVVEWLISKFELHPKLDEENTTVTIDGK----RLEGEDKSQIIDQFNEAIFLEKY---YIPPG 80 (149)
T ss_pred HHHHHHHHHh-eecCcHHHHHHHHHHheecccccccceEEEECCe----ecCchHHHHHHHHHhHHHHHHhh---ccCCC
Confidence 3344444333 234578899999999999985322 111222333 34555555555555443333333 35666
Q ss_pred CC---------cchhcccccc
Q psy2982 220 ND---------LTFLRLRSKK 231 (443)
Q Consensus 220 de---------L~~LRirTkk 231 (443)
|| -+=+-|+|||
T Consensus 81 ~e~~~l~pe~~gtPlvI~tKk 101 (149)
T PF10787_consen 81 NEERYLHPENSGTPLVIDTKK 101 (149)
T ss_pred CcccccCcccCCCCEEEEecc
Confidence 66 4555566664
No 32
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=26.55 E-value=1.4e+02 Score=28.26 Aligned_cols=60 Identities=13% Similarity=0.240 Sum_probs=47.3
Q ss_pred cchHHHHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHHHHHHHHHHHHHHHhhhcC
Q psy2982 155 IMSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREID 217 (443)
Q Consensus 155 l~S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA~li~~lv~~Ars~vr~LD 217 (443)
+-.+.+...+++++++- |+-+|++++..++=|-..+...+||..+.+..+.+++.+++.+
T Consensus 23 isqsavS~~i~~LE~~l---g~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~~~~~~~ 82 (279)
T TIGR03339 23 LSQPTVTDQVRKLEERY---GVELFHRNGRRLELTDAGHRLLPIVERLFQQEAEAEFLLRESG 82 (279)
T ss_pred CCchHHHHHHHHHHHHh---CCccEEEcCCeEEEChhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45577888888998885 8889999988888888888888888877777777777666554
No 33
>TIGR00798 mtc tricarboxylate carrier. The MTC family consists of a limited number of homologues, all from eukaryotes. A single member of the family has been functionally characterized, the tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism.
Probab=26.18 E-value=1.4e+02 Score=30.93 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhHhhhhcCCccccc-chhHHHHHHHHHHHHhhhhhhhccccchHHHHHHHHHHhhccceeEEEEEec
Q psy2982 103 RAAWYTAGIVGGLSTVAACAPSDKFLT-MGGPLAIGLGVVFASSIEFSYTKLDIMSTEIEETLKRIQSHRGVAGVIVING 181 (443)
Q Consensus 103 ~Af~~Ta~iF~~lS~~g~~Tk~d~l~~-lG~~L~~gli~liiaslvn~F~~l~l~S~~ve~~l~rI~~~~gV~GvvIf~~ 181 (443)
.+.+.|++.-.++.+-.+.-|....+. +|. +.-+..+..|+.+|+++ ++++|++ .|+-|+|.
T Consensus 144 Y~~Av~~a~~~AlgLn~~v~k~~~~~pll~R--~VPf~AVa~An~~Ni~l---MR~~El~------------~GI~V~D~ 206 (318)
T TIGR00798 144 YCAAVTGACGVALGLNMMVKKSPSLSPLIGR--LVPFAAVAVANAINIPM---MRGNELT------------EGIEVFDE 206 (318)
T ss_pred HHHHHHHHHHHHHhHHHHHhhhccccHHHHH--hCcHHHHHHhcccchHh---hhhHHHh------------cCceeECC
Confidence 333566666666666443333321221 121 13356677888899987 7887776 37789999
Q ss_pred CCceE
Q psy2982 182 DGIPI 186 (443)
Q Consensus 182 ~GipI 186 (443)
||..+
T Consensus 207 ~G~~v 211 (318)
T TIGR00798 207 DGETV 211 (318)
T ss_pred CCCcc
Confidence 99766
No 34
>CHL00180 rbcR LysR transcriptional regulator; Provisional
Probab=23.13 E-value=1.8e+02 Score=28.49 Aligned_cols=60 Identities=8% Similarity=0.199 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHHHHHHHHHHHHHHHhhhcC
Q psy2982 155 IMSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREID 217 (443)
Q Consensus 155 l~S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA~li~~lv~~Ars~vr~LD 217 (443)
+-++.+...+++++..- |+-+|++++..++=|-..+...+||..+.+-.+.+...+++.+
T Consensus 31 isqpavS~~i~~LE~~l---g~~Lf~R~~r~~~lT~~G~~l~~~a~~ll~~~~~~~~~~~~~~ 90 (305)
T CHL00180 31 ISQPAVSLQIKNLEKQL---NIPLFDRSKNKASLTEAGELLLRYGNRILALCEETCRALEDLK 90 (305)
T ss_pred CCChHHHHHHHHHHHHh---CCEEEEecCCCceECHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566777777777775 8889999998888777777777788777666666666666654
No 35
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional
Probab=21.98 E-value=2.3e+02 Score=27.31 Aligned_cols=59 Identities=12% Similarity=0.337 Sum_probs=45.3
Q ss_pred cchHHHHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHHHHHHHHHHHHHHHhhhc
Q psy2982 155 IMSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREI 216 (443)
Q Consensus 155 l~S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA~li~~lv~~Ars~vr~L 216 (443)
+-.+.+...+++++.+- |+-+|++++..++=|-+.+.-.+++..+.+-.+.+...+.+.
T Consensus 27 isqsavS~~i~~LE~~l---g~~Lf~R~~~~~~lT~~G~~l~~~~~~il~~~~~~~~~~~~~ 85 (296)
T PRK11242 27 VSQPTLSQQIRQLEESL---GVQLFDRSGRTVRLTDAGEVYLRYARRALQDLEAGRRAIHDV 85 (296)
T ss_pred CCchHHHHHHHHHHHHh---CCeeEeEcCCceeechhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677888899998885 888999998888877777788888877766666666655554
No 36
>PRK11246 hypothetical protein; Provisional
Probab=21.61 E-value=59 Score=31.77 Aligned_cols=84 Identities=18% Similarity=0.251 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHHHHHHHHHHH--HHHHhhhcCC-CCCcchhcccccccc
Q psy2982 157 STEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDK--AKSVVREIDA-TNDLTFLRLRSKKNE 233 (443)
Q Consensus 157 S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA~li~~lv~~--Ars~vr~LDp-~deL~~LRirTkk~E 233 (443)
.+.+++.++++...+.|...-|+|.||..+-.+-+....++--++=.+.... -+..|+-+-. ++.+-|+|++-..|.
T Consensus 71 ~e~L~~lln~La~d~~VlDAsIY~~~G~llA~S~~~~~~re~L~Ld~~~~~s~~~qQiVEPI~~~~~~lGFlRvTldt~~ 150 (218)
T PRK11246 71 EKRIQAILDQLTDESRILDASVYDEQGDLIARSGESVNVRDRLALDGKKAGSYFNQQIVEPIAGKNGPLGFLRLTLDTHT 150 (218)
T ss_pred HHHHHHHHHHHhcCCceeeEEEECCCCCEEEecCCCccHHHHhCCCCccccccCCCceEEEecCCCCceeEEEEEeeccc
Confidence 3568889999999999999999999999998765433322111111111100 0333444433 455889999866555
Q ss_pred eeecCCCc
Q psy2982 234 IMIAPDKQ 241 (443)
Q Consensus 234 i~Ia~~~~ 241 (443)
.. +++++
T Consensus 151 ~~-~e~~q 157 (218)
T PRK11246 151 LA-TEAKQ 157 (218)
T ss_pred ch-hhHHH
Confidence 43 44443
No 37
>PF07341 DUF1473: Protein of unknown function (DUF1473); InterPro: IPR009941 This entry represents a family of hypothetical proteins of around 150 residues in length found in Borrelia species. The function of this family is unknown.
Probab=21.33 E-value=36 Score=31.09 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=12.3
Q ss_pred hhhhhCC-CCccCCCCCC
Q psy2982 427 TRAERTP-PYVTYDPVNA 443 (443)
Q Consensus 427 ~~~~~~~-~~~~~dpi~~ 443 (443)
+..+++. ||+|||.|||
T Consensus 110 s~y~dn~GDfVkfdYIde 127 (163)
T PF07341_consen 110 SEYEDNVGDFVKFDYIDE 127 (163)
T ss_pred hhhhcCCCCEEEeccccc
Confidence 4556665 6888888885
No 38
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=20.67 E-value=2.2e+02 Score=29.24 Aligned_cols=65 Identities=18% Similarity=0.149 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhHhhhhcCCcccccchhHHHHHHHHHHHHhhhhhhhccccchHHHHHHHHHHhhccceeEEEEEecCC
Q psy2982 104 AAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIEETLKRIQSHRGVAGVIVINGDG 183 (443)
Q Consensus 104 Af~~Ta~iF~~lS~~g~~Tk~d~l~~lG~~L~~gli~liiaslvn~F~~l~l~S~~ve~~l~rI~~~~gV~GvvIf~~~G 183 (443)
+.+.++++-.++.+-.+.-|+- =..++.++ -+..+..|+.+|+++ ++++|++ .|+-|+|.||
T Consensus 137 ~~At~~a~~~Algl~~~~~~~~-~pl~~r~v--Pf~AVA~An~~Nv~~---mR~~El~------------~GI~V~D~~G 198 (308)
T PF03820_consen 137 VGATTSAVGTALGLNRLVKKNA-SPLLGRLV--PFAAVAAANCINVPL---MRSNELE------------NGIEVFDEDG 198 (308)
T ss_pred HhhhHHHHHHHHHHHHHHhccc-cHHHHHHh--hHHHHHHhhhcchHh---cCHHHHc------------ccceeECCCC
Confidence 3344445555555555554332 01233332 356777888899887 7887776 3778999999
Q ss_pred ceE
Q psy2982 184 IPI 186 (443)
Q Consensus 184 ipI 186 (443)
..+
T Consensus 199 ~~v 201 (308)
T PF03820_consen 199 NVV 201 (308)
T ss_pred CEe
Confidence 987
No 39
>TIGR03418 chol_sulf_TF putative choline sulfate-utilization transcription factor. Members of this protein family are transcription factors of the LysR family. Their genes typically are divergently transcribed from choline-sulfatase genes. That enzyme makes choline, a precursor to the osmoprotectant glycine-betaine, available by hydrolysis of choline sulfate.
Probab=20.49 E-value=1.4e+02 Score=28.95 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHHHHHHHHHHHHHHHhh
Q psy2982 155 IMSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVR 214 (443)
Q Consensus 155 l~S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA~li~~lv~~Ars~vr 214 (443)
+-.+.+...+++++++- |+-+|+++|..++=|-..+.-.+||..+.+-.+.+++-++
T Consensus 27 itqpavS~~Ik~LE~~l---g~~LF~R~~r~~~lT~~G~~l~~~a~~il~~~~~~~~~~~ 83 (291)
T TIGR03418 27 STQPAVSQQVKRLEEEL---GTPLFERGHRGIELTEDGQRLFEAVRAGLDTIDLATAQLR 83 (291)
T ss_pred CCHHHHHHHHHHHHHHh---CcHHhhcCCCceeEcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567778888888885 8889999998888887778888888776666665555544
Done!