Query psy2982
Match_columns 443
No_of_seqs 331 out of 1163
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 22:31:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l7h_A RE64145P, roadblock; LC 100.0 9.2E-34 3.1E-38 237.8 8.5 95 157-251 2-96 (97)
2 2hz5_A Dynein light chain 2A, 100.0 9E-32 3.1E-36 229.2 9.1 95 157-251 11-105 (106)
3 3leq_A Uncharacterized protein 95.6 0.039 1.3E-06 47.5 8.3 93 158-251 3-99 (126)
4 1vet_B P14, late endosomal/lys 95.5 0.074 2.5E-06 45.8 9.6 96 155-251 2-98 (125)
5 3t12_B Gliding protein MGLB; G 95.2 0.1 3.5E-06 45.7 9.5 93 158-251 11-109 (136)
6 3msh_A Hepatitis B virus X-int 95.1 0.088 3E-06 43.8 8.3 83 158-246 3-86 (99)
7 3kye_A Roadblock/LC7 domain, R 94.8 0.14 4.9E-06 45.6 9.4 102 148-250 16-120 (150)
8 1j3w_A Giding PROTEIN-MGLB; gl 94.6 0.16 5.5E-06 45.7 9.5 95 157-252 13-113 (163)
9 3cpt_A Mitogen-activated prote 69.2 7 0.00024 34.4 5.4 84 156-252 20-106 (143)
10 3b47_A GSU0582, methyl-accepti 24.0 71 0.0024 26.9 4.1 31 156-186 30-60 (134)
11 2grg_A Hypothetical protein; Y 21.5 48 0.0016 27.8 2.3 56 148-212 16-73 (120)
No 1
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=100.00 E-value=9.2e-34 Score=237.83 Aligned_cols=95 Identities=71% Similarity=1.078 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhcccccccceee
Q psy2982 157 STEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIMI 236 (443)
Q Consensus 157 S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~Ei~I 236 (443)
++|+||+++||++||||.|++|.|.+|+|+||++|++++++||+++.+|+++||+++|++||+|||+|||+|||||||||
T Consensus 2 ~~eveetl~ri~~~kgV~G~iI~n~~G~pirst~d~~~~~~yA~~~~~L~~~a~~~vrdlDp~del~fLRiRTkk~EimI 81 (97)
T 3l7h_A 2 SQEVEETLKRIQSHKGVVGTIVVNNEGIPVKSTLDNTTTVQYAGLMSQLADKARSVVRDLDPSNDMTFLRVRSKKHEIMV 81 (97)
T ss_dssp -------CHHHHTSTTEEEEEEEETTSCEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEE
T ss_pred cHHHHHHHHHHhcCCCceEEEEECCCCCEeEEeCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCcEEEE
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEeecchh
Q psy2982 237 APDKQFILIITTNEL 251 (443)
Q Consensus 237 a~~~~~~l~Vvqn~~ 251 (443)
|||++|+++|+|||.
T Consensus 82 aPd~~f~liVvQ~~~ 96 (97)
T 3l7h_A 82 APDKDFILIVIQNPT 96 (97)
T ss_dssp EEETTEEEEEEEC--
T ss_pred EcCCCEEEEEEecCC
Confidence 999999999999973
No 2
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=99.97 E-value=9e-32 Score=229.17 Aligned_cols=95 Identities=61% Similarity=0.958 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhcccccccceee
Q psy2982 157 STEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIMI 236 (443)
Q Consensus 157 S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~Ei~I 236 (443)
.+|+||+++||+++|||.|++|.|.||+||||++|++.+++||+++.+|+++||+++|++||+|||+|||+|||||||||
T Consensus 11 ~~evEe~l~RI~~~kgV~G~iIln~~G~pIrSt~d~~~~~~yA~li~~L~~~A~~~vr~lDp~deL~fLRiRTkkhEimI 90 (106)
T 2hz5_A 11 MAEVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDPQNDLTFLRIRSKKNEIMV 90 (106)
T ss_dssp ----CHHHHHHHTSTTEEEEEEECTTCCEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEE
T ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCCeEEEecCchHHHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeCCcEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEeecchh
Q psy2982 237 APDKQFILIITTNEL 251 (443)
Q Consensus 237 a~~~~~~l~Vvqn~~ 251 (443)
+||++|+++|+|||.
T Consensus 91 apd~~~~LiVvQ~~~ 105 (106)
T 2hz5_A 91 APDKDYFLIVIQNPT 105 (106)
T ss_dssp EC---CEEEEEECC-
T ss_pred EecCCEEEEEEecCC
Confidence 999999999999973
No 3
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=95.64 E-value=0.039 Score=47.55 Aligned_cols=93 Identities=14% Similarity=0.209 Sum_probs=63.8
Q ss_pred HHHHHHHHHHh-hccceeEEEEEecCCceEEEec--CchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhcccccccce
Q psy2982 158 TEIEETLKRIQ-SHRGVAGVIVINGDGIPIKTTL--DNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEI 234 (443)
Q Consensus 158 ~~ve~~l~rI~-~~~gV~GvvIf~~~GipIkst~--d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~Ei 234 (443)
+++++.++++. ..|||.+.++.+.||.++-++. |..++.+-|.....+...++..-++++ ..+++-+=+++.+..+
T Consensus 3 ~~l~~lL~~l~~~v~gv~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~~-~G~~~qv~ve~~~G~l 81 (126)
T 3leq_A 3 SQLDQLLTGLVDRVAEVDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFR-RGPVRQALIEMGKGYL 81 (126)
T ss_dssp CHHHHHHHHHHHHCTTEEEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC--------------CEEEEECSSCEE
T ss_pred chHHHHHHHHHhcCCCceEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEEEeCCCEE
Confidence 46788899986 5899999999999999999875 556899999999999999999888885 5667667778888887
Q ss_pred eecCCC-ceEEEeecchh
Q psy2982 235 MIAPDK-QFILIITTNEL 251 (443)
Q Consensus 235 ~Ia~~~-~~~l~Vvqn~~ 251 (443)
++.+=+ +..|.|.-++-
T Consensus 82 ~v~~ag~~a~L~vla~~~ 99 (126)
T 3leq_A 82 ILTAAGPGAHLVVLTRQG 99 (126)
T ss_dssp EEEESSTTEEEEEEECTT
T ss_pred EEEEeCCCcEEEEEeCCC
Confidence 777666 46666654443
No 4
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=95.52 E-value=0.074 Score=45.82 Aligned_cols=96 Identities=13% Similarity=0.220 Sum_probs=68.1
Q ss_pred cchHHHHHHHHHHhhccceeEEEEEecCCceEEEec-CchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhcccccccc
Q psy2982 155 IMSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTL-DNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNE 233 (443)
Q Consensus 155 l~S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~-d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~E 233 (443)
++++.+++.++++ ..+||.+.++++.||-++-++. ++.++.+-|.....+...+++.-++.-.+++++-+=+..++--
T Consensus 2 L~~~~L~~~L~~l-~~~gv~~a~lvs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~ 80 (125)
T 1vet_B 2 LRPKALTQVLSQA-NTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGR 80 (125)
T ss_dssp CCHHHHHHHHHHH-CCTTEEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEE
T ss_pred CcHHHHHHHHHHc-CCCCceEEEEECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCE
Confidence 4667889999999 7899999999999999998865 4557888888888888878887775333444444444444444
Q ss_pred eeecCCCceEEEeecchh
Q psy2982 234 IMIAPDKQFILIITTNEL 251 (443)
Q Consensus 234 i~Ia~~~~~~l~Vvqn~~ 251 (443)
+.|.+-++..|.|.-++.
T Consensus 81 l~i~~a~~a~L~Vla~~~ 98 (125)
T 1vet_B 81 VAITRVANLLLCMYAKET 98 (125)
T ss_dssp EEEEEETTEEEEEEECTT
T ss_pred EEEEEcCCeEEEEEeCCC
Confidence 444444566666665444
No 5
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=95.18 E-value=0.1 Score=45.73 Aligned_cols=93 Identities=11% Similarity=0.160 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhccceeEEEEEecCCceEEEec-----CchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhccccccc
Q psy2982 158 TEIEETLKRIQSHRGVAGVIVINGDGIPIKTTL-----DNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKN 232 (443)
Q Consensus 158 ~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~-----d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~ 232 (443)
+.+++.++++....||.++++.|.||.+|-+.. ++.+....|.+...-...++..-+.+..+ |+.-+=...++.
T Consensus 11 ~~i~~iL~~L~~~~gv~~~~lvd~dG~vIa~~~~~~~~~~~d~~~lAAl~A~~~~a~~~la~~Lge~-~~~~l~~eGe~~ 89 (136)
T 3t12_B 11 AAAVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVASNAAATQALAKLLGEA-RFQEEVHQGERM 89 (136)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEETTC-CCEEEECTTSCCCSCHHHHHHHHHHHHHHHHHHHHHTTCS-CCCCEEEECSSC
T ss_pred HHHHHHHHHHHhhcCCeEEEEEcCCCCEEEEeccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCC-chhHheEEcCcC
Confidence 467889999999999999999999999998864 35688889999999999999988888744 566666677777
Q ss_pred ceeecCCC-ceEEEeecchh
Q psy2982 233 EIMIAPDK-QFILIITTNEL 251 (443)
Q Consensus 233 Ei~Ia~~~-~~~l~Vvqn~~ 251 (443)
-+.+.+=+ ++.|+|+-+..
T Consensus 90 ~i~i~~vg~~~iLvvifd~~ 109 (136)
T 3t12_B 90 GLYVDEAGEHALLVLVFDET 109 (136)
T ss_dssp EEEEEESSTTEEEEEEECTT
T ss_pred CEEEEEcCCCEEEEEEeCCC
Confidence 77777764 57775555443
No 6
>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*
Probab=95.09 E-value=0.088 Score=43.79 Aligned_cols=83 Identities=19% Similarity=0.364 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHHHHHHHHHHHHHHHhhhcCCC-CCcchhcccccccceee
Q psy2982 158 TEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDAT-NDLTFLRLRSKKNEIMI 236 (443)
Q Consensus 158 ~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA~li~~lv~~Ars~vr~LDp~-deL~~LRirTkk~Ei~I 236 (443)
.++|+.++.+.+.|+|.|++..|.+|-.+.+.-+-+ .++|+.+..+.+.|+. |||+ +|--.+-+-|....++|
T Consensus 3 ~~Le~~L~~~m~~pgvvGvlc~D~qGLcLg~~G~~s--~~~AG~i~~la~~Aak----L~p~~~~~P~I~LEsDs~~~~I 76 (99)
T 3msh_A 3 ATLEQHLEDTMKNPSIVGVLCTDSQGLNLGCRGTLS--DEHAGVISVLAQQAAK----LTSDPTDIPVVCLESDNGNIMI 76 (99)
T ss_dssp CCHHHHHHHHHTSTTEEEEEEECTTCCEEEEEETCC--GGGHHHHHHHHHHHHH----TCCCSSCCCCEEEEETTEEEEE
T ss_pred hHHHHHHHHHhccCCcEEEEEECCCCCcccccCCCC--cccchHHHHHHHHHHh----cCCCCCCCCEEEEEeCCceEEE
Confidence 357889999999999999999999999999875543 2456777888888876 6776 45444445555555555
Q ss_pred cCCCceEEEe
Q psy2982 237 APDKQFILII 246 (443)
Q Consensus 237 a~~~~~~l~V 246 (443)
--++..++.|
T Consensus 77 qk~~~iTvAV 86 (99)
T 3msh_A 77 QKHDGITVAV 86 (99)
T ss_dssp EEETTEEEEE
T ss_pred EeCCcEEEEE
Confidence 5555555444
No 7
>3kye_A Roadblock/LC7 domain, ROBL_LC7; alpga-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces avermitilis}
Probab=94.76 E-value=0.14 Score=45.59 Aligned_cols=102 Identities=12% Similarity=0.142 Sum_probs=69.5
Q ss_pred hhhhccccchHHHHHHHHHHh-hccceeEEEEEecCCceEEE-ecCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchh
Q psy2982 148 FSYTKLDIMSTEIEETLKRIQ-SHRGVAGVIVINGDGIPIKT-TLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFL 225 (443)
Q Consensus 148 n~F~~l~l~S~~ve~~l~rI~-~~~gV~GvvIf~~~GipIks-t~d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~L 225 (443)
|++|+- -+..++++.++++. .-|||.+.++...||.+..| ..+..++.+.|.....+...++..-+++++..++.-.
T Consensus 16 ~~~~~~-~~~~~l~wlL~~L~~~vpGV~~AvvvS~DGLla~S~~l~~~dae~LAA~aSgl~SLa~~aa~~~~~~G~vrqv 94 (150)
T 3kye_A 16 NLYFQG-HHVSDLDWLMSGLVQRVPHTTSAVLLSCDGLVKSVHGLDPDSADHMAALASGLYSLGRSAGIRFGDGGDVRQV 94 (150)
T ss_dssp ---------CHHHHHHHHHHHHHSTTEEEEEEEETTSCEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCEE
T ss_pred ceeecC-CCcccHHHHHHHHHhcCCCeeEEEEEcCCCCEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCeEEE
Confidence 555432 24568999999995 68999999999999995554 3577889999999999999999999998744545444
Q ss_pred cccccccceeecCCC-ceEEEeecch
Q psy2982 226 RLRSKKNEIMIAPDK-QFILIITTNE 250 (443)
Q Consensus 226 RirTkk~Ei~Ia~~~-~~~l~Vvqn~ 250 (443)
=++..+.-+++.+-+ +..|.|.-++
T Consensus 95 ~VE~~~G~l~v~~aG~ga~LaVla~~ 120 (150)
T 3kye_A 95 VVELDSTLLFVSTAGSGTCLAVLAGR 120 (150)
T ss_dssp EEEESSEEEEEEEEETTEEEEEEEET
T ss_pred EEEeCCcEEEEEEcCCCcEEEEEeCC
Confidence 455555555554443 4455555433
No 8
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=94.60 E-value=0.16 Score=45.74 Aligned_cols=95 Identities=11% Similarity=0.149 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHhhccceeEEEEEecCCceEEE-----ecCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhcccccc
Q psy2982 157 STEIEETLKRIQSHRGVAGVIVINGDGIPIKT-----TLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKK 231 (443)
Q Consensus 157 S~~ve~~l~rI~~~~gV~GvvIf~~~GipIks-----t~d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk 231 (443)
...+++.++++...+||.++++.+.||.++-+ +.+..++.+.|.+...+...++..-+++.. .+++-+=+++.+
T Consensus 13 ~~~l~~lL~~L~~v~Gv~~avlvs~DGl~ia~~~~~~~~~~~d~d~lAA~~A~~~sl~~~~a~~l~~-G~~~q~~ve~~~ 91 (163)
T 1j3w_A 13 YERAVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGE-ARFQEEVHQGER 91 (163)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEETTSCEEEEEECTTSCCCSCHHHHHHHHHHHHHHTHHHHHHTTC-SSCSEEEEECSS
T ss_pred HHHHHHHHHHHhccCCceEEEEEcCCCCEEEeecccccCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCC
Confidence 35678889999889999999999999999998 554448899999999999999999888874 445555566666
Q ss_pred cceeecCC-CceEEEeecchhH
Q psy2982 232 NEIMIAPD-KQFILIITTNELL 252 (443)
Q Consensus 232 ~Ei~Ia~~-~~~~l~Vvqn~~~ 252 (443)
.-+.+.+= +++.|.|+-++-.
T Consensus 92 g~l~v~~~g~~a~L~Vla~~~a 113 (163)
T 1j3w_A 92 MGLYVDEAGEHALLVLVFDETA 113 (163)
T ss_dssp CEEEEEESSTTEEEEEEECTTS
T ss_pred cEEEEEEeCCCeEEEEEeCCCC
Confidence 66666654 4466666554443
No 9
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=69.23 E-value=7 Score=34.41 Aligned_cols=84 Identities=19% Similarity=0.310 Sum_probs=46.3
Q ss_pred chHHHHHHHHHH-hhccceeEEEEEecCCceEEE-ecCch-hHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhccccccc
Q psy2982 156 MSTEIEETLKRI-QSHRGVAGVIVINGDGIPIKT-TLDNQ-TTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKN 232 (443)
Q Consensus 156 ~S~~ve~~l~rI-~~~~gV~GvvIf~~~GipIks-t~d~~-~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~ 232 (443)
+++++++-++++ ++.+|+.+++|-|+||.|+-. +.|+. +...-...+..+...+ .-...| +--|+
T Consensus 20 m~~~Lq~~L~~ll~rv~Gl~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~-dQ~sKL-----------glGkn 87 (143)
T 3cpt_A 20 SADDLKRFLYKKLPSVEGLHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALAT-DQGSKL-----------GLSKN 87 (143)
T ss_dssp --CHHHHHHHHHGGGSTTEEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHH-HHHHHH-----------TCCCE
T ss_pred hHHHHHHHHHHHHhccCCeEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHH-HHHhhc-----------CCCCC
Confidence 456676666654 478899999999999999844 43331 1111112333332222 112222 33456
Q ss_pred ceeecCCCceEEEeecchhH
Q psy2982 233 EIMIAPDKQFILIITTNELL 252 (443)
Q Consensus 233 Ei~Ia~~~~~~l~Vvqn~~~ 252 (443)
+-+|+--++|.+ |.-|..|
T Consensus 88 ksII~~Y~~yqv-Vq~n~~P 106 (143)
T 3cpt_A 88 KSIICYYNTYQV-VQFNRLP 106 (143)
T ss_dssp EEEEEECSSEEE-EEEEETT
T ss_pred ceEEEEecCeEE-EEEecCC
Confidence 666777777766 4435666
No 10
>3b47_A GSU0582, methyl-accepting chemotaxis protein; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 2.00A {Geobacter sulfurreducens}
Probab=23.96 E-value=71 Score=26.95 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=27.9
Q ss_pred chHHHHHHHHHHhhccceeEEEEEecCCceE
Q psy2982 156 MSTEIEETLKRIQSHRGVAGVIVINGDGIPI 186 (443)
Q Consensus 156 ~S~~ve~~l~rI~~~~gV~GvvIf~~~GipI 186 (443)
....+++.++++.+.+++.++-|++.+|.+.
T Consensus 30 ~~~~~~~~i~~i~~~~~I~~irI~~~~g~i~ 60 (134)
T 3b47_A 30 DMAVIERYVADVRGKGAVLDLRIYDAAGRPA 60 (134)
T ss_dssp CHHHHHHHHHHHTTCCCEEEEEEEETTSCBC
T ss_pred CHHHHHHHHHHHhccCCceEEEEECCCCcEe
Confidence 3478899999999999999999999999774
No 11
>2grg_A Hypothetical protein; YNR034W-AP; helix/beta strand protein, structural genomics, PSI, protein structure initiative; NMR {Saccharomyces cerevisiae} SCOP: d.110.10.1
Probab=21.49 E-value=48 Score=27.82 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=32.1
Q ss_pred hhhhccccchH-HHHHHHHHHhhccceeEEEEEecCCceEEEecCch-hHHHHHHHHHHHHHHHHHH
Q psy2982 148 FSYTKLDIMST-EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQ-TTVQYAGLVSQLVDKAKSV 212 (443)
Q Consensus 148 n~F~~l~l~S~-~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~-~~~~yA~li~~lv~~Ars~ 212 (443)
|++|+-.+.|+ .+.|.+ |+..|++-||.++.+|.++-=.+ --+ ..+.|.+++.+.-
T Consensus 16 ~~~~~~~m~ss~~L~ell------P~alGtLtFDen~nlIessGIgk~i~k---~rVeDIv~lS~ve 73 (120)
T 2grg_A 16 NLYFQGHMKSSIPITEVL------PRAVGSLTFDENYNLLDTSGVAKVIEK---SPIAEIIRKSNAE 73 (120)
T ss_dssp -------CCCCEEHHHHH------HHCSEEEEECTTSCEEEEEEGGGTSCC---TTHHHHHHHHHHH
T ss_pred ceEEeeeeccCccHHHhc------CCceeEEEEcCCCCEEecccccccccc---chHHHHHHHhhhh
Confidence 56666666665 555554 67899999999999998874222 000 2356667777664
Done!