RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2982
(443 letters)
>gnl|CDD|198413 cd10431, GHITM, Growth-hormone inducible transmembrane protein.
GHITM appears to be ubiquitiously expressed in mammalian
cells and expression has also been observed in various
cancer cell lines. A cytoprotective function has been
suggested. It is closely related to the BAX inhibitor
(BI)-1 like family of small transmembrane proteins,
which have been shown to have an antiapoptotic effect.
Length = 264
Score = 215 bits (550), Expect = 2e-67
Identities = 95/145 (65%), Positives = 117/145 (80%)
Query: 2 WPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGM 61
WPQYVRDRI STY YFGGS+ L+A +A A+ SP ++RL++ LA+ ++A ++GSGM
Sbjct: 36 WPQYVRDRIHSTYMYFGGSLGLTALAAVALSRSPALMRLMAAGPWLAIGATLAAMIGSGM 95
Query: 62 LVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAAC 121
LV+S Y GAK +AW HS + GAV+AP+CF+GGP+LIRAA YTAGIVGGLSTVAAC
Sbjct: 96 LVRSYTYPENPGAKHLAWLGHSGVQGAVLAPLCFLGGPLLIRAALYTAGIVGGLSTVAAC 155
Query: 122 APSDKFLTMGGPLAIGLGVVFASSI 146
APS+KFL MGGPLAIGLGVVFASS+
Sbjct: 156 APSEKFLYMGGPLAIGLGVVFASSL 180
Score = 156 bits (397), Expect = 7e-45
Identities = 88/186 (47%), Positives = 106/186 (56%), Gaps = 30/186 (16%)
Query: 260 LTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAW 319
L + ++A ++GSGMLV+S Y GAK +AW HS + GAV+AP+CF+GGP+LIRAA
Sbjct: 81 LAIGATLAAMIGSGMLVRSYTYPENPGAKHLAWLGHSGVQGAVLAPLCFLGGPLLIRAAL 140
Query: 320 YTAGIVGAFKIGQGAVAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLV 379
YTAGIVG L +G GLG+
Sbjct: 141 YTAGIVGGLSTVAACAPSEKFLYMGGPLAIGLGVVFASS--------------------- 179
Query: 380 NEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLFSGFLLYDTQKIITRAERTPPY--VT 437
L S FLPPTTALGAGLYS++LYGGL+LF GFLLYDTQKII RAE P Y
Sbjct: 180 -------LGSMFLPPTTALGAGLYSVSLYGGLVLFGGFLLYDTQKIIKRAETHPLYGVRK 232
Query: 438 YDPVNA 443
YDP+NA
Sbjct: 233 YDPINA 238
Score = 44.7 bits (106), Expect = 4e-05
Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 331 GQGAVAGGAVLGLGALCYYGLGLSSERGAQE 361
G+ +AG A +GLGALCYYGLGLSSE GA E
Sbjct: 1 GRALLAGAAAVGLGALCYYGLGLSSEIGAIE 31
>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.
Programmed cell-death involves a set of Bcl-2 family
proteins, some of which inhibit apoptosis (Bcl-2 and
Bcl-XL) and some of which promote it (Bax and Bak).
Human Bax inhibitor, BI-1, is an evolutionarily
conserved integral membrane protein containing multiple
membrane-spanning segments predominantly localised to
intracellular membranes. It has 6-7 membrane-spanning
domains. The C termini of the mammalian BI-1 proteins
are comprised of basic amino acids resembling some
nuclear targeting sequences, but otherwise the predicted
proteins lack motifs that suggest a function. As plant
BI-1 appears to localise predominantly to the ER, we
hypothesized that plant BI-1 could also regulate cell
death triggered by ER stress. BI-1 appears to exert its
effect through an interaction with calmodulin.
Length = 205
Score = 84.5 bits (210), Expect = 6e-19
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
Query: 7 RDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSL 66
R + Y ++L+AA AY V ++P +L+L+ + + +ALL+ +L +
Sbjct: 1 RKFLRKVYGLLALGLLLTAAVAYLVLSTPALLQLLFPLFWVGLLLPLALLIFVFLLFSRI 60
Query: 67 EYKPGFGAKQIAWALHSALVGAVVAPIC--FIGGPVLIRAAWYTAGIVGGLSTVAACAPS 124
+ K A L + L G + PI + G ++++A TA I GGLS A
Sbjct: 61 KKKSS-SAALALLFLFTLLEGLTLGPILLVYTAGSIILQAFLGTAAIFGGLSLYALTTKR 119
Query: 125 DKFLTMGGPLAIGLGVVFASSI 146
D +GG L GL + +S+
Sbjct: 120 D-LSFLGGFLFAGLIGLIVASL 140
Score = 52.2 bits (126), Expect = 8e-08
Identities = 44/195 (22%), Positives = 67/195 (34%), Gaps = 36/195 (18%)
Query: 244 LIITTNELLLLYIDLNLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVV 303
L+++T LL L L L+ L+ S K A L + L G +
Sbjct: 24 LVLSTPALLQLLFPLFWVGLLLPLALLIFVFLLFSRIKKKSSSAALALLFLFTLLEGLTL 83
Query: 304 APIC--FIGGPVLIRAAWYTAGIVGAFKIGQGAVAGGAVLGLGALCYYGLGLSSERGAQE 361
PI + G ++++A TA I G + + LG + GL
Sbjct: 84 GPILLVYTAGSIILQAFLGTAAIFGGLSLY-ALTTKRDLSFLGGFLFAGLIG-------- 134
Query: 362 VQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLFSGFLLYD 421
+ L + FLP + L G+L+FSG +LYD
Sbjct: 135 --------------------LIVASLVNIFLP-----SSALSLAISAIGVLIFSGLILYD 169
Query: 422 TQKIITRAERTPPYV 436
TQ+I E Y+
Sbjct: 170 TQRIKEGGETDDYYI 184
>gnl|CDD|214939 smart00960, Robl_LC7, Roadblock/LC7 domain. This family includes
proteins that are about 100 amino acids long and have
been shown to be related. Members of this family of
proteins are associated with both flagellar outer arm
dynein and Drosophila and rat brain cytoplasmic dynein.
It is proposed that roadblock/LC7 family members may
modulate specific dynein functions. This family also
includes Golgi-associated MP1 adapter protein and MglB
from Myxococcus xanthus, a protein involved in gliding
motility. However the family also includes members from
non-motile bacteria such as Streptomyces coelicolor,
suggesting that the protein may play a structural or
regulatory role.
Length = 88
Score = 75.7 bits (187), Expect = 5e-17
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 160 IEETLKRIQSHRGVAGVIVINGDGIPIKTT-LDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
IEE L + GV G +V++ DG+ + ++ L + + A L + L+ A+ RE+
Sbjct: 1 IEELLDLLARVPGVRGALVVSRDGLLLASSGLSDDDAERLAALAAGLLSLAERAARELGE 60
Query: 219 TNDLTFLRLRSKKNEIMIAPDKQFILII 246
+L LR+ +K E++I P +L +
Sbjct: 61 -GELRQLRIEGEKGEVLITPAGDALLAV 87
>gnl|CDD|217460 pfam03259, Robl_LC7, Roadblock/LC7 domain. This family includes
proteins that are about 100 amino acids long and have
been shown to be related. Members of this family of
proteins are associated with both flagellar outer arm
dynein and Drosophila and rat brain cytoplasmic dynein.
It is proposed that roadblock/LC7 family members may
modulate specific dynein functions. This family also
includes Golgi-associated MP1 adapter protein and MglB
from Myxococcus xanthus, a protein involved in gliding
motility. However the family also includes members from
non-motile bacteria such as Streptomyces coelicolor,
suggesting that the protein may play a structural or
regulatory role.
Length = 91
Score = 75.0 bits (185), Expect = 9e-17
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQT-TVQYAGLVSQLVDKAKSVVREID 217
E L+ +Q GV G +V++ DG+ + +T + + A L S L+ AK++ R++
Sbjct: 1 LDELLLELLQRVPGVRGALVVSKDGLVLASTGLDDDDADRLAALASGLLSAAKALARDLG 60
Query: 218 ATNDLTFLRLRSKKNEIMIAPDKQFILI 245
+L L + KK E+ + P + L+
Sbjct: 61 -GGELRQLLIEGKKGELYLTPAGEGALL 87
>gnl|CDD|198409 cd06181, BI-1-like, BAX inhibitor (BI)-1/YccA-like protein family.
Mammalian members of the BAX inhibitor (BI)-1 like
family of small transmembrane proteins have been shown
to have an antiapoptotic effect either by stimulating
the antiapoptotic function of Bcl-2, a
well-characterized oncogene, or by inhibiting the
proapoptotic effect of Bax, another member of the Bcl-2
family. Their broad tissue distribution and high degree
of conservation suggests an important regulatory role.
This superfamily also contains the lifeguard(LFG)-like
proteins and other subfamilies which appear to be
related by common descent and also function as
inhibitors of apoptosis. In plants, BI-1 like proteins
play a role in pathogen resistance. A prokaryotic
member, Escherichia coli YccA, has been shown to
interact with ATP-dependent protease FtsH, which
degrades abnormal membrane proteins as part of a quality
control mechanism to keep the integrity of biological
membranes.
Length = 202
Score = 77.5 bits (191), Expect = 2e-16
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
Query: 5 YVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQ 64
+D + Y ++L+AA+A A T+ S M L+ S + +
Sbjct: 1 STKDFLRKVYMILALQLLLTAATATAF----TVCDPGWYWSPALMG-----LLTSMLALM 51
Query: 65 SLEYKPG--FGAKQIAWALHSALVGAVVAPICFIGGP-VLIRAAWYTAGIVGGLSTVAAC 121
+ I + L+G VV P+ F GP +L+RA TA + GL+ A
Sbjct: 52 ATAAMIRAKMPVNLILLFGFTGLMGYVVGPLLFFYGPTILLRALGGTALVFFGLTVYALQ 111
Query: 122 APSDKFLTMGGPLAIGLGVVFASSI 146
A FL +GGPL GLG + S +
Sbjct: 112 A-RKDFLFLGGPLMAGLGFLLLSFL 135
Score = 60.5 bits (147), Expect = 1e-10
Identities = 45/166 (27%), Positives = 60/166 (36%), Gaps = 49/166 (29%)
Query: 284 GFGAKQIAWALHSALVGAVVAPICFIGGP-VLIRAAWYTAGIVG-----AFKIGQGAVAG 337
I + L+G VV P+ F GP +L+RA TA + A + + +
Sbjct: 60 KMPVNLILLFGFTGLMGYVVGPLLFFYGPTILLRALGGTALVFFGLTVYALQARKDFLFL 119
Query: 338 GAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTA 397
G L G L +L S FL T
Sbjct: 120 GGPLMAG--------------------------------------LGFLLLS-FLLNTFF 140
Query: 398 LGAGLYSITLYGGLLLFSGFLLYDTQKIITRAERTPPYVTYDPVNA 443
L+ + GL+LF GFLLYDTQ II +AE P D +NA
Sbjct: 141 YSPWLHLVAAAVGLVLFCGFLLYDTQLIIHKAEVGP----EDYINA 182
>gnl|CDD|198414 cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor
(BI)-1/YccA-like proteins. This family is comprised of
bacterial relatives of the mammalian members of the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins, which have been shown to have an antiapoptotic
effect either by stimulating the antiapoptotic function
of Bcl-2, a well-characterized oncogene, or by
inhibiting the proapoptotic effect of Bax, another
member of the Bcl-2 family. In plants, BI-1 like
proteins play a role in pathogen resistance. A
characterized prokaryotic member, Escherichia coli YccA,
has been shown to interact with ATP-dependent protease
FtsH, which degrades abnormal membrane proteins as part
of a quality control mechanism to keep the integrity of
biological membranes.
Length = 211
Score = 53.3 bits (129), Expect = 3e-08
Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 7/136 (5%)
Query: 13 TYAYFGGSIVLSAASAYAVFTSP-TMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPG 71
Y ++L+A AY ++P +L S + + +AL+ G + K
Sbjct: 9 VYGLMAAGLLLTAVGAYVGASTPALLLIAGSPLMWVLLIAELALVFGLSFRIN----KMS 64
Query: 72 FGAKQIAWALHSALVGAVVAPI-CFIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTM 130
+ +AL G ++PI G + +A + TA GGLS D +
Sbjct: 65 VATALPLFFAFAALTGLTLSPILLVYTGASIAQAFFTTAATFGGLSLYGYTTKKD-LSFL 123
Query: 131 GGPLAIGLGVVFASSI 146
G L +GL + +S+
Sbjct: 124 GSFLFMGLIGLIIASL 139
Score = 34.8 bits (81), Expect = 0.045
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 401 GLYSITLYGGLLLFSGFLLYDTQKIITRAERTPPYVTYD 439
L G+L+FSG + YDTQ+I E Y
Sbjct: 148 ALQFAISAIGVLIFSGLIAYDTQRIKRMYEAGGGESGYK 186
>gnl|CDD|198412 cd10430, BI-1, BAX inhibitor (BI)-1. Mammalian members of the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins have been shown to have an antiapoptotic effect
either by stimulating the antiapoptotic function of
Bcl-2, a well-characterized oncogene, or by inhibiting
the proapoptotic effect of Bax, another member of the
Bcl-2 family. Their broad tissue distribution and high
degree of conservation suggests an important regulatory
role. In plants, BI-1 like proteins play a role in
pathogen resistance.
Length = 213
Score = 44.1 bits (105), Expect = 4e-05
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 402 LYSITLYGGLLLFSGFLLYDTQKIITRAER 431
L+ LY GLL+F GF+L+DTQ II +AE
Sbjct: 152 LFQAELYLGLLVFCGFVLFDTQMIIEKAEN 181
>gnl|CDD|198411 cd10429, GAAP_like, Golgi antiapoptotic protein. GAAP (or
transmembrane BAX inhibitor motif containing 4) is a
regulator of apoptosis that is related to the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins, which have been shown to have an antiapoptotic
effect either by stimulating the antiapoptotic function
of Bcl-2, a well-characterized oncogene, or by
inhibiting the proapoptotic effect of Bax, another
member of the Bcl-2 family. Human GAAP has been linked
to the modulation of intracellular fluxes of Ca(2+), by
suppressing influx from the extracellular medium and
reducing release from intracellular stores. A viral
homolog (vaccinia virus vGAAP) acts similar to its human
counterpart in inhibiting apoptosis.
Length = 233
Score = 40.3 bits (95), Expect = 0.001
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 374 DWDYLVNEELWIMLRSAFL---PPTTALGAGLYSITLYGGLLLFSGFLLYDTQKIITRA 429
+ L+ LW ++ A + P + +Y+ G LLFSG+++YDTQ I+ R
Sbjct: 147 SFGALLFILLWALILLALIFQFFPYSPTFELVYAG---LGALLFSGYIVYDTQLIMKRL 202
>gnl|CDD|223742 COG0670, COG0670, Integral membrane protein, interacts with FtsH
[General function prediction only].
Length = 233
Score = 32.7 bits (75), Expect = 0.26
Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 16/154 (10%)
Query: 13 TYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGF 72
Y ++++A A L L+S S IA L +G+ S +
Sbjct: 27 VYLLLALGLLVTAVGAALAAYLLFNLGLLS-LSPPGFVLIIAGL--AGVFFLSRKINKSS 83
Query: 73 GAKQIAWALHSALVGAVVAPICFI-----GGPVLIRAAWYTAGIVGGLSTVAACAPSD-- 125
I + +++ALVG ++PI + GG + A TA + G LS D
Sbjct: 84 PTALILFFVYTALVGLTLSPILLVYAAISGGDAIAAAFGITALVFGALSLYGYTTKRDLS 143
Query: 126 ---KFLTMGGPLAIGLGVVFASSIEFSYTKLDIM 156
FL M IGL + +I + L +
Sbjct: 144 SLGSFLFMA---LIGLIIASLVNIFLGSSALHLA 174
Score = 28.4 bits (64), Expect = 7.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 408 YGGLLLFSGFLLYDTQKII 426
G+L+FSG + YDTQ I
Sbjct: 177 VLGVLIFSGLIAYDTQNIK 195
>gnl|CDD|217499 pfam03336, Pox_C4_C10, Poxvirus C4/C10 protein.
Length = 335
Score = 30.8 bits (70), Expect = 1.2
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 148 FSYTKLDIMSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVD 207
FS + D + EI E L S + V + ++ +L+ + L + + D
Sbjct: 7 FSDDEFDDIKNEIIELLNTNYSESKIFDVYECKSKQVVLENSLNEDII---SKLRNLIYD 63
Query: 208 KAKSVVREIDATNDLTF 224
+ K+VV ++ ND+TF
Sbjct: 64 ELKNVVDDVCVENDVTF 80
>gnl|CDD|218948 pfam06230, DUF1009, Protein of unknown function (DUF1009). Family
of uncharacterized bacterial proteins.
Length = 212
Score = 29.7 bits (68), Expect = 2.3
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 315 IRAAWYTAGIVGAFKIGQGAV-AGGAVLGLGAL 346
I A +GA IGQ V GAVL + A+
Sbjct: 98 IARGAEVAKALGALDIGQAVVVKDGAVLAVEAI 130
>gnl|CDD|237542 PRK13882, PRK13882, conjugal transfer protein TrbP; Provisional.
Length = 232
Score = 29.7 bits (67), Expect = 2.5
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 290 IAWALHSALVGA-VVAPICFIGGPVLIRAAWYTAGIV----GAFKIGQGAVAGGAVLGLG 344
A+ + V A + F+ G L+ W F+ A A A+L
Sbjct: 112 TAYLVERGGKLHLVAAGVVFLVGGSLVEYWWPAVAFGLAAWSYFRRPSWAAAAVALLACA 171
Query: 345 ALCYY 349
ALC+
Sbjct: 172 ALCFV 176
>gnl|CDD|217552 pfam03429, MSP1b, Major surface protein 1B. The major surface
protein (MSP1) of the cattle pathogen Anaplasma is a
heterodimer comprised of MSP1a and MSP1b. This family is
the MSP1b chain. There MSP1 proteins are putative
adhesins for bovine erythrocytes.
Length = 726
Score = 30.1 bits (67), Expect = 3.3
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 74 AKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGP 133
A Q W A+ G + + + G V + A YTA IVG +AA P+ LT
Sbjct: 294 AAQATWE-GLAMTGKFMGAVAKLAGAVSMCVAAYTAAIVG----MAAATPATLLLTAMDN 348
Query: 134 LAIGLGVVFASSIEFSYTKL---DIMSTE 159
++ VV S S + D+M++E
Sbjct: 349 QSVNNAVVKVSEYLHSNVEQATKDLMASE 377
>gnl|CDD|216832 pfam01990, ATP-synt_F, ATP synthase (F/14-kDa) subunit. This
family includes 14-kDa subunit from vATPases, which is
in the peripheral catalytic part of the complex. The
family also includes archaebacterial ATP synthase
subunit F.
Length = 92
Score = 27.2 bits (61), Expect = 4.9
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 12/49 (24%)
Query: 134 LAIGLGVVFASSIEFSYTKLDIMSTEIEETLKRIQSHRGVAGVIVINGD 182
G+GVV+ S E E EE + + + G+I+I D
Sbjct: 14 RLAGIGVVYVVSPE-----------EAEEAFEELLEREDI-GIILITED 50
>gnl|CDD|226025 COG3494, COG3494, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 279
Score = 28.5 bits (64), Expect = 6.3
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 315 IRAAWYTAGIVGAFKIGQGAVA-GGAVLGLGA 345
I A +GA +GQGAV GG V+ +
Sbjct: 156 IELGIEAANALGALDVGQGAVVVGGRVVAVEG 187
>gnl|CDD|224929 COG2018, COG2018, Uncharacterized distant relative of homeotic
protein bithoraxoid [General function prediction only].
Length = 119
Score = 27.6 bits (62), Expect = 6.6
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Query: 156 MSTEIEETLKR-IQSHRGVAGVIVINGDGIPIKTTLD-NQTTVQYAGLVSQLVDKAKSVV 213
++E L ++ GV G +V++ DG+PI L N A + + + A+
Sbjct: 1 KQNMLDEVLLDLNRNVPGVRGALVVSKDGLPIAAELPGNVDAEIVAAMAATALGLAERAA 60
Query: 214 REIDATNDLTFLRLRSKKNEIMIAP-DKQFILII---TTNELLLLYIDL 258
E+ +L + + KK +I++ IL++ L L+ +++
Sbjct: 61 DELG-GGELEQIMIEGKKGKILLYDAGDDAILVVLADEGTNLGLIRMEM 108
>gnl|CDD|223453 COG0376, KatG, Catalase (peroxidase I) [Inorganic ion transport and
metabolism].
Length = 730
Score = 28.5 bits (64), Expect = 7.7
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Query: 311 GPVLIRAAWYTAGIVGAFKIGQGAVAGGA 339
GP+ IR AW++A G ++IG G GGA
Sbjct: 95 GPLFIRMAWHSA---GTYRIGDG--RGGA 118
>gnl|CDD|193287 pfam12811, BaxI_1, Bax inhibitor 1 like. The Bax-inhibitor-1
region of the receptor molecules is conserved from
bacteria to humans.
Length = 238
Score = 27.8 bits (61), Expect = 9.8
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 2 WPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTML 38
+ + + + Y G+IVL+ + T L
Sbjct: 138 FTRMIVAALFGVLVYLLGNIVLAVFTGGGGLTDGGPL 174
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.418
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,194,837
Number of extensions: 2382009
Number of successful extensions: 2874
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2850
Number of HSP's successfully gapped: 114
Length of query: 443
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 343
Effective length of database: 6,502,202
Effective search space: 2230255286
Effective search space used: 2230255286
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.2 bits)