RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2982
(443 letters)
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein;
2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Length = 106
Score = 149 bits (379), Expect = 2e-44
Identities = 58/91 (63%), Positives = 74/91 (81%)
Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
E+EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+ + KA+S VR+ID
Sbjct: 13 EVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDP 72
Query: 219 TNDLTFLRLRSKKNEIMIAPDKQFILIITTN 249
NDLTFLR+RSKKNEIM+APDK + LI+ N
Sbjct: 73 QNDLTFLRIRSKKNEIMVAPDKDYFLIVIQN 103
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase,
protei transport; 1.95A {Drosophila melanogaster} PDB:
3l9k_A 1z09_A 2e8j_A 1y4o_A
Length = 97
Score = 144 bits (365), Expect = 1e-42
Identities = 68/94 (72%), Positives = 84/94 (89%)
Query: 156 MSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVRE 215
MS E+EETLKRIQSH+GV G IV+N +GIP+K+TLDN TTVQYAGL+SQL DKA+SVVR+
Sbjct: 1 MSQEVEETLKRIQSHKGVVGTIVVNNEGIPVKSTLDNTTTVQYAGLMSQLADKARSVVRD 60
Query: 216 IDATNDLTFLRLRSKKNEIMIAPDKQFILIITTN 249
+D +ND+TFLR+RSKK+EIM+APDK FILI+ N
Sbjct: 61 LDPSNDMTFLRVRSKKHEIMVAPDKDFILIVIQN 94
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 6e-04
Identities = 49/263 (18%), Positives = 84/263 (31%), Gaps = 84/263 (31%)
Query: 6 VRDRITSTYAYFGGSIVLSAASAYAVFT----------SPTMLRLVSGNSMLAMFGS--- 52
V + + +FGG Y+ + + + ++ +S F S
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 53 ---------IALLMGSGMLVQSLEYKPGFGAKQIAWAL--HSALVG---AVVAPICFIGG 98
AL + + L+ K G HS +G A+ + +
Sbjct: 1725 LLSATQFTQPALTLMEKAAFEDLKSK---GLIPADATFAGHS--LGEYAALAS----LAD 1775
Query: 99 PVL-IRAAWYTAGIV---GGLSTVAACAPSDKF-LTMGGPLAIGLGVVFASSIEFSYTKL 153
V+ I + +V G T+ P D+ + G +AI G V AS
Sbjct: 1776 -VMSIESL---VEVVFYRG--MTMQVAVPRDELGRSNYGMIAINPGRVAAS--------- 1820
Query: 154 DIMSTE-IEETLKRIQSHRGVAGVIVI-NGDGIPIKTTLDNQTTVQY--AGLVSQLVDKA 209
S E ++ ++R+ G ++ I N N QY AG + L D
Sbjct: 1821 --FSQEALQYVVERVGKRTG--WLVEIVN----------YNVENQQYVAAGDLRAL-DT- 1864
Query: 210 KSVVREIDATNDLTFLRLRSKKN 232
TN L F++L+
Sbjct: 1865 --------VTNVLNFIKLQKIDI 1879
Score = 39.6 bits (92), Expect = 0.002
Identities = 69/437 (15%), Positives = 124/437 (28%), Gaps = 193/437 (44%)
Query: 6 VRDRITSTYAYFGGSIVLSAASAYAVF--------TSPTMLRLVSGNSMLAMFGSIALLM 57
V + A FGG Y F T ++ L+
Sbjct: 149 VGEGNAQLVAIFGGQ---GNTDDY--FEELRDLYQTYHVLVG--------------DLIK 189
Query: 58 GSGMLVQSLE---------YKPGFGAKQIAWALHSA--------LVGAVVA-PICFIGGP 99
S + L + G + W L + L+ ++ P+ IG
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILE--W-LENPSNTPDKDYLLSIPISCPL--IG-- 242
Query: 100 VLIRAAWY--------------------TAGIVGGLSTVAACAPSD----------KFLT 129
+I+ A Y G GL T A A +D K +T
Sbjct: 243 -VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 130 ----MG-------GPLAIGLGVVFASSIE---------FSYTKLDIMSTEIEETLKRIQS 169
+G ++ ++ S+E S + L ++++ + + S
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSIL-EDSLENNEGVPSPMLSISNLTQ--EQVQDYVNKTNS 358
Query: 170 HRGVAGVIVI---NGD------GIP-----IKTTL--------DNQTTVQYAG------- 200
H + I NG G P + TL +Q+ + ++
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 201 --LV------SQLVDKAKSVVREIDATNDLTF----LR-----------LRSKKNEI--M 235
L S L+ A ++ + N+++F ++ LR I
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 236 IAPDKQFILIITTN---ELLLLY-----IDLNLTMFG-----SIALLM-----GSGM--- 274
I II E + +D FG + +L G+G+
Sbjct: 479 IVD-----CIIRLPVKWETTTQFKATHILD-----FGPGGASGLGVLTHRNKDGTGVRVI 528
Query: 275 LVQSLEYKPG--FGAKQ 289
+ +L+ P +G KQ
Sbjct: 529 VAGTLDINPDDDYGFKQ 545
Score = 37.0 bits (85), Expect = 0.014
Identities = 38/222 (17%), Positives = 63/222 (28%), Gaps = 61/222 (27%)
Query: 197 QYAG----------LVSQLVDKAKSVVRE--------IDATN--DLTFL-------RLRS 229
Q G + ++A + ++ I N +LT R+R
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 230 KKNEIMIA--PDKQFI---LIITTNELLLLYI------DLNLTMFGSIALLMGSGMLVQS 278
+ ++ D + + NE Y L+ T F AL + +
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 279 LEYKPGFGAKQIAWAL--HS-----ALV---GAV----VAPICFIGGPVLIRAAWYTAGI 324
L+ K G HS AL + + + F G + A
Sbjct: 1747 LKSK---GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAV--PRDE 1801
Query: 325 VGAFKIGQGAVAGGAV---LGLGALCYYGLGLSSERGAQEVQ 363
+G G A+ G V AL Y + G V+
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG-WLVE 1842
>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins,
profilin-like fold, roadblock/LC7 domai superfamily,
protein binding; HET: PG4; 1.51A {Homo sapiens} PDB:
3ms6_A*
Length = 99
Score = 38.1 bits (88), Expect = 7e-04
Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 156 MSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSV 212
M +E+ L+ + + GV+ + G+ + + ++AG++S L +A +
Sbjct: 1 MEATLEQHLEDTMKNPSIVGVLCTDSQGLNLGCR--GTLSDEHAGVISVLAQQAAKL 55
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.009
Identities = 24/227 (10%), Positives = 61/227 (26%), Gaps = 86/227 (37%)
Query: 149 SYTKLDI----MSTEIEETLKRIQSHRGVAGVIVINGD---GIPIKTTL------DNQTT 195
+ K ++ ++ + L ++ + V +I+G G KT + +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNV----LIDGVLGSG---KTWVALDVCLSYKVQ 177
Query: 196 VQYAGLV-----------------------------SQLVDKAKSVVREIDATND--LTF 224
+ + + D + ++ I +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 225 LRLRSKKNEIMIAPD-------KQF-----ILIITTN-------------ELLLLYIDLN 259
L+ + +N +++ + F IL+ T + L + +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 260 LTMFGSIALLMGS-GMLVQSL--EYKPGFGAKQIAWALHSALVGAVV 303
LT +LL+ Q L E +++ +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPRE------VLTTN-PRRLSIIAESI 337
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 30.7 bits (69), Expect = 1.1
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 14/61 (22%)
Query: 332 QGAVAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEEL-WIMLRSA 390
GAVA G L A+ Y +++ D+V V D LV E+L + + R
Sbjct: 65 SGAVAQG----LSAINTYLGDNNAD---------DYVRMVRTDLMGLVREDLIYDLGRHV 111
Query: 391 F 391
Sbjct: 112 D 112
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family;
2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Length = 141
Score = 29.4 bits (67), Expect = 1.1
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 341 LGLGALCYYGLGLSSERG---AQEVQYWDWV---HYVTMDWDYLV 379
LG + G+ E+ A++++ +D+V + + D +
Sbjct: 60 LGYSLVTITGVDTKPEKLFEVAEKLKEYDFVKELYLSSGDHMIMA 104
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family,
transcription, DNA- binding, transcription regulation;
2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Length = 152
Score = 29.4 bits (67), Expect = 1.1
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 341 LGLGALCYYGLGLSSERG----AQEVQYWDWV---HYVTMDWDYLV 379
LG C+ G+ L S + +++ D V +Y T + +
Sbjct: 64 LGYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTTGHYSIFI 109
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural
genomics, PSI, protein structure initiative; 2.80A
{Escherichia coli} SCOP: d.144.1.6
Length = 328
Score = 29.7 bits (66), Expect = 1.7
Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 7/105 (6%)
Query: 290 IAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGAFKIGQGAVAGGAVLGLGALCYY 349
+AL VA G L+ + + + V G
Sbjct: 71 HQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPS-------VGGRQFEADNIDQME 123
Query: 350 GLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPP 394
+G R Q + ++H T+ + + E + + +P
Sbjct: 124 AVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPS 168
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 29.4 bits (66), Expect = 2.4
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 135 AIGLGVVFASSIEFSYTKL---DIMSTEIEETLKRI-----QSHRGVAGVIVINGDGIPI 186
F +IE K + + E+ + + Q HRG+ G ++ DG I
Sbjct: 257 NYLNTNCFEVTIELGCVKYPKAEELPKYWEQNRRSLLQFIKQVHRGIWGFVLDATDGRGI 316
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.418
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,869,132
Number of extensions: 439465
Number of successful extensions: 821
Number of sequences better than 10.0: 1
Number of HSP's gapped: 818
Number of HSP's successfully gapped: 32
Length of query: 443
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 346
Effective length of database: 3,993,456
Effective search space: 1381735776
Effective search space used: 1381735776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.7 bits)