RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2982
         (443 letters)



>d2hz5a1 d.110.7.1 (A:5-94) Dynein light chain 2A, cytoplasmic
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 90

 Score =  152 bits (385), Expect = 5e-46
 Identities = 57/89 (64%), Positives = 72/89 (80%)

Query: 161 EETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATN 220
           EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+   + KA+S VR+ID  N
Sbjct: 1   EETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDPQN 60

Query: 221 DLTFLRLRSKKNEIMIAPDKQFILIITTN 249
           DLTFLR+RSKKNEIM+APDK + LI+  N
Sbjct: 61  DLTFLRIRSKKNEIMVAPDKDYFLIVIQN 89


>d1vetb_ d.110.7.1 (B:) Late endosomal/lysosomal Mp1 interacting
           protein p14 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 118

 Score = 28.2 bits (63), Expect = 0.72
 Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 172 GVAGVIVINGDGIPI-KTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSK 230
           GV   +++N +G  +  +   +      A + S +         +    + L F+ +   
Sbjct: 18  GVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCM 77

Query: 231 KNEIMIAPDKQFILIITTNE 250
           +  + I      +L +   E
Sbjct: 78  EGRVAITRVANLLLCMYAKE 97


>d1j3wa_ d.110.7.1 (A:) Giding protein MglB {Thermus thermophilus
           [TaxId: 274]}
          Length = 134

 Score = 27.1 bits (60), Expect = 2.2
 Identities = 10/101 (9%), Positives = 28/101 (27%), Gaps = 6/101 (5%)

Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPI-----KTTLDNQTTVQYAGLVSQLVDKAKSVV 213
              E L+      G    ++I+  G  +                 A LV+      +++ 
Sbjct: 10  RAVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALA 69

Query: 214 REIDATN-DLTFLRLRSKKNEIMIAPDKQFILIITTNELLL 253
           + +          +       +  A +   ++++      L
Sbjct: 70  KLLGEARFQEEVHQGERMGLYVDEAGEHALLVLVFDETAPL 110


>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836)
           {Thermus thermophilus [TaxId: 274]}
          Length = 254

 Score = 26.4 bits (57), Expect = 6.1
 Identities = 8/76 (10%), Positives = 14/76 (18%), Gaps = 3/76 (3%)

Query: 359 AQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLY---GGLLLFS 415
           A+     + V    ++                         A           GG  L +
Sbjct: 158 AEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLT 217

Query: 416 GFLLYDTQKIITRAER 431
           G L      +      
Sbjct: 218 GILKDRAPLVREAMAG 233


>d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli
           [TaxId: 562]}
          Length = 327

 Score = 26.2 bits (58), Expect = 7.9
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 206 VDKAKSVVREIDATNDLTFLRLRSKKNEIMIAPDKQFILIITTNELLLLYIDLN 259
               KS V  I A    T   +  +       PD+  I  + + ELL  Y DL+
Sbjct: 127 FSTLKSTVEAIWAGIKATEAAVSEEFGLAPFLPDQ--IHFVHSQELLSRYPDLD 178


>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea)
           [TaxId: 3562]}
          Length = 359

 Score = 26.4 bits (57), Expect = 8.1
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 106 WYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIEETLK 165
           +   G+  G     A A     + +G P+   L    A         L +M  E E T+ 
Sbjct: 283 FLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLA---AEGEAGVKKVLQMMRDEFELTMA 339


>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 349

 Score = 26.4 bits (57), Expect = 8.2
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 106 WYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIEETLK 165
           +   G+  G   + A A   + + +G P+  GL        +     LDI++ E+   + 
Sbjct: 276 YMDGGVRTGTDVLKALALGARCIFLGRPILWGLA---CKGEDGVKEVLDILTAELHRCMT 332


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0467    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,609,078
Number of extensions: 74317
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 11
Length of query: 443
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 355
Effective length of database: 1,199,356
Effective search space: 425771380
Effective search space used: 425771380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.2 bits)