BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2983
(370 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/313 (65%), Positives = 246/313 (78%), Gaps = 17/313 (5%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D SVPLA+GL GQ++LG+PIIVQ +QAEKNRA NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ-KGSAGPMRLYVGSLHFNI 261
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFG+I++IQLM+D +TGRSKGYGFITF ++ AKKA EQLNGFELAGRPM
Sbjct: 262 TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 321
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPPAAASAL- 245
KVG VT+R ++ S LD+DE+ER G+DLG TGRLQLM +LAEGTGL++PPAA AL
Sbjct: 322 KVGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQ 380
Query: 246 ---NLAQNAILNSSTPQVSSST----------APPIATQCFLLANMFDPATETNPTWDVE 292
+LA A+ + T ++S T P+ATQCF L+NMF+P TE WD E
Sbjct: 381 MSGSLAFGAVADLQT-RLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTE 439
Query: 293 IRDDVIEECNKHG 305
I+DDVIEECNKHG
Sbjct: 440 IKDDVIEECNKHG 452
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/318 (63%), Positives = 244/318 (76%), Gaps = 21/318 (6%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D SVPLA+GL GQ++LG+PIIVQ +QAEKNRA NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ-KGSAGPMRLYVGSLHFNI 261
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFG+I++IQLM+D +TGRSKGYGFITF ++ AKKA EQLNGFELAGRPM
Sbjct: 262 TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 321
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPPAAASALN 246
KVG VT+R ++ S LD+DE+ER G+DLG TGRLQLM +LAEGTGL++PPAA AL
Sbjct: 322 KVGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQ 380
Query: 247 L---------AQNAILNSSTPQVSSST----------APPIATQCFLLANMFDPATETNP 287
+ A+ + + ++S T P+ATQCF L+NMF+P TE
Sbjct: 381 MSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEV 440
Query: 288 TWDVEIRDDVIEECNKHG 305
WD EI+DDVIEECNKHG
Sbjct: 441 GWDTEIKDDVIEECNKHG 458
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/318 (63%), Positives = 244/318 (76%), Gaps = 21/318 (6%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D SVPLA+GL GQ++LG+PIIVQ +QAEKNRA NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ-KGSAGPMRLYVGSLHFNI 261
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFG+I++IQLM+D +TGRSKGYGFITF ++ AKKA EQLNGFELAGRPM
Sbjct: 262 TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 321
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPPAAASALN 246
KVG VT+R ++ S LD+DE+ER G+DLG TGRLQLM +LAEGTGL++PPAA AL
Sbjct: 322 KVGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQ 380
Query: 247 L---------AQNAILNSSTPQVSSST----------APPIATQCFLLANMFDPATETNP 287
+ A+ + + ++S T P+ATQCF L+NMF+P TE
Sbjct: 381 MSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEV 440
Query: 288 TWDVEIRDDVIEECNKHG 305
WD EI+DDVIEECNKHG
Sbjct: 441 GWDTEIKDDVIEECNKHG 458
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 320 bits (819), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 175/289 (60%), Positives = 213/289 (73%), Gaps = 18/289 (6%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+LSPEERDART+FCMQL+ RIR RDLE+FFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 156 DNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFC 215
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
+ +SVPLA+GL GQ+LLG+PIIVQ +QAEKNR NLQ +G GGPMRLY+GSLHFNI
Sbjct: 216 EIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQ-KGNGGPMRLYVGSLHFNI 274
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFGKIDNI LM D DTGRSKGYGFITF ++ A++A EQLNGFELAGRPM
Sbjct: 275 TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 334
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLG-ATGRLQLMFKLAEGTGLELPPAAASAL 245
+VG VT+R + GG + E +DLG A GR QLM KLAEG G++LP AA+A
Sbjct: 335 RVGHVTERLD--GGTDITFPDGDQE---LDLGSAGGRFQLMAKLAEGAGIQLPSTAAAAA 389
Query: 246 NLAQNAI---------LNSSTPQVSSSTAPP--IATQCFLLANMFDPAT 283
A A L + P ++ +P +A+QCF L+++F P T
Sbjct: 390 AAAAQAAALQLNGAVPLGALNPAALTALSPALNLASQCFQLSSLFTPQT 438
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 185/350 (52%), Gaps = 57/350 (16%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
LS EERD RT+F QL+ R+ +R+L +FF G VRD +++ + R KG+AY+EF
Sbjct: 232 LSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHE 291
Query: 69 ESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGG-PM-RLYIGSLHFNI 126
+SV A+ L+G++LLG+P+IVQ T+AEKNR L + P RL + ++HFN+
Sbjct: 292 DSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNL 351
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
T++ ++ IFEPFG I+ + L D D RSKG+G+I + + A+ A E++NGF+LAGR M
Sbjct: 352 TDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNM 410
Query: 187 KVGTVTDR-------------NESVG-----------GGPSNLDTDEMERAGVDLGAT-- 220
+V D+ +E++ GG S ++ + R L T
Sbjct: 411 RVCLGNDKFTTETTSSMLKRFDETLARQERSQPSQRNGGSSTYESQDY-REAAPLSPTEE 469
Query: 221 -----GRLQLMFKLAEGTGLELPPAAASALNLAQNAILNSSTPQVSSSTAPPIATQCFLL 275
R +LM KLA + S ++ S PPI ++C LL
Sbjct: 470 ESRPITRDELMKKLARSEDI-------------------SDNSKLVSEPEPPIRSRCALL 510
Query: 276 ANMFDPATETNPTWDVEIRDDVIEECN-KHG--VGASTVCFIYSVIFLKL 322
NMF+PA ET+P W E+ DV EEC+ K+G V + V IF+K
Sbjct: 511 ENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKF 560
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 101/203 (49%), Gaps = 16/203 (7%)
Query: 2 RPAYSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIA 61
RPA S + + T+F +LS + + L + F G + R+I ++ R KG
Sbjct: 248 RPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYG 307
Query: 62 YIEFKDPESVPLAMGLNGQKL---------LGIPIIVQPTQAEKNRAGNTLPNL-QPRGT 111
Y++F+ PE+ A+ NG K L P P + RAGN L +P T
Sbjct: 308 YVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDT 367
Query: 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKK 171
+++G+L FN TED L F G I +I+L DP +GR KG+G++TF D AKK
Sbjct: 368 -----VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
Query: 172 AQEQLNGFELAGRPMKVGTVTDR 194
E +NG +AGRP ++ T R
Sbjct: 423 CVE-MNGHFIAGRPCRLDFSTPR 444
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 41/210 (19%)
Query: 5 YSDDLSP------EERDARTIFCM----QLSQRIRTRDLEEFFSSVGKVRDVRLITCNKT 54
+ D LSP + + A I C + + + + F+ G ++ + + + T
Sbjct: 106 FGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT 165
Query: 55 RRFKGIAYIEFKDPESVPLAMGLNGQKLLG---------------IPIIVQPTQAEKNRA 99
+ KG A++E++ PE+ LA+ +LG PII Q AE+ RA
Sbjct: 166 MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQ--LAEEARA 223
Query: 100 GNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYG 159
N R+Y+ S+H ++++D ++ +FE FGKI + L DP TG+ KGYG
Sbjct: 224 FN--------------RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG 269
Query: 160 FITFHSADDAKKAQEQLNGFELAGRPMKVG 189
FI + A ++ A +N F+L G+ ++VG
Sbjct: 270 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 299
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 41/210 (19%)
Query: 5 YSDDLSP------EERDARTIFCM----QLSQRIRTRDLEEFFSSVGKVRDVRLITCNKT 54
+ D LSP + + A I C + + + + F+ G ++ + + + T
Sbjct: 107 FGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT 166
Query: 55 RRFKGIAYIEFKDPESVPLAMGLNGQKLLG---------------IPIIVQPTQAEKNRA 99
+ KG A++E++ PE+ LA+ +LG PII Q AE+ RA
Sbjct: 167 MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQ--LAEEARA 224
Query: 100 GNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYG 159
N R+Y+ S+H ++++D ++ +FE FGKI + L DP TG+ KGYG
Sbjct: 225 FN--------------RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG 270
Query: 160 FITFHSADDAKKAQEQLNGFELAGRPMKVG 189
FI + A ++ A +N F+L G+ ++VG
Sbjct: 271 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 300
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 41/210 (19%)
Query: 5 YSDDLSP------EERDARTIFCM----QLSQRIRTRDLEEFFSSVGKVRDVRLITCNKT 54
+ D LSP + + A I C + + + + F+ G ++ + + + T
Sbjct: 112 FGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT 171
Query: 55 RRFKGIAYIEFKDPESVPLAMGLNGQKLLG---------------IPIIVQPTQAEKNRA 99
+ KG A++E++ PE+ LA+ +LG PII Q AE+ RA
Sbjct: 172 MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQ--LAEEARA 229
Query: 100 GNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYG 159
N R+Y+ S+H ++++D ++ +FE FGKI + L DP TG+ KGYG
Sbjct: 230 FN--------------RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG 275
Query: 160 FITFHSADDAKKAQEQLNGFELAGRPMKVG 189
FI + A ++ A +N F+L G+ ++VG
Sbjct: 276 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 305
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 41/210 (19%)
Query: 5 YSDDLSP------EERDARTIFCM----QLSQRIRTRDLEEFFSSVGKVRDVRLITCNKT 54
+ D LSP + + A I C + + + + F+ G ++ + + + T
Sbjct: 112 FGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT 171
Query: 55 RRFKGIAYIEFKDPESVPLAMGLNGQKLLG---------------IPIIVQPTQAEKNRA 99
+ KG A++E++ PE+ LA+ +LG PII Q AE+ RA
Sbjct: 172 MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQ--LAEEARA 229
Query: 100 GNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYG 159
N R+Y+ S+H ++++D ++ +FE FGKI + L DP TG+ KGYG
Sbjct: 230 FN--------------RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG 275
Query: 160 FITFHSADDAKKAQEQLNGFELAGRPMKVG 189
FI + A ++ A +N F+L G+ ++VG
Sbjct: 276 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 305
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 41/210 (19%)
Query: 5 YSDDLSP------EERDARTIFCM----QLSQRIRTRDLEEFFSSVGKVRDVRLITCNKT 54
+ D LSP + + A I C + + + + F+ G ++ + + + T
Sbjct: 78 FGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT 137
Query: 55 RRFKGIAYIEFKDPESVPLAMGLNGQKLLG---------------IPIIVQPTQAEKNRA 99
+ KG A++E++ PE+ LA+ +LG PII Q AE+ RA
Sbjct: 138 MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQ--LAEEARA 195
Query: 100 GNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYG 159
N R+Y+ S+H ++++D ++ +FE FGKI + L DP TG+ KGYG
Sbjct: 196 FN--------------RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG 241
Query: 160 FITFHSADDAKKAQEQLNGFELAGRPMKVG 189
FI + A ++ A +N F+L G+ ++VG
Sbjct: 242 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 271
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 98/189 (51%), Gaps = 17/189 (8%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRR-FKGIAYIEF 65
DD P RT++ LS+ + + + FS +G + ++IT + + + + + E
Sbjct: 4 DDGQP-----RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEH 58
Query: 66 KDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFN 125
+D + AM NG+K+LG + V N A T P+ Q + T +++G L
Sbjct: 59 RDAAAALAAM--NGRKILGKEVKV-------NWA--TTPSSQKKDTSNHFHVFVGDLSPE 107
Query: 126 ITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRP 185
IT + ++ F PFGKI + +++ D TG+SKGYGF++F++ DA+ A + G L GR
Sbjct: 108 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 167
Query: 186 MKVGTVTDR 194
++ T +
Sbjct: 168 IRTNWATRK 176
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 16/179 (8%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK---DPESVPLAM 75
+F LS I T D++ F+ GK+ D R++ T + KG ++ F D E+ + M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLHFNITE 128
G L G+++ +P + + NT ++ + + +Y G + +T+
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 218
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V P+ KGY F+ F + + A A +NG + G +K
Sbjct: 219 QLMRQTFSPFGQI--MEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 271
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 31/172 (18%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLG-------- 84
+ + F+ G ++ + + + T + KG A++E++ PE+ LA+ +LG
Sbjct: 102 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 161
Query: 85 -------IPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEP 137
PII Q AE+ RA N R+Y+ S+H ++++D ++ +FE
Sbjct: 162 PGSIGQAQPIIEQ--LAEEARAYN--------------RIYVASIHPDLSDDDIKSVFEA 205
Query: 138 FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
FGKI + L +P TG+ KG+GFI + + A +N F+L G+ ++VG
Sbjct: 206 FGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVG 257
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+GS+++ + ED +R F PFG I +I + D T + KG+ F+ + + A+ A EQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 176 LNGFELAGRPMKVG 189
+N L GR +KVG
Sbjct: 147 MNSVMLGGRNIKVG 160
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
+ L+ E R I+ + + D++ F + GK++ L T + KG +IE++
Sbjct: 173 EQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYE 232
Query: 67 DPES 70
P+S
Sbjct: 233 KPQS 236
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 17/179 (9%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
+ERD+RT+F + +L+E F + +D+R+ T K KGIAY+EF + +
Sbjct: 320 KERDSRTLFVKNIPYSTTVEELQEIFEN---AKDIRIPT-GKDGSNKGIAYVEFSNEDEA 375
Query: 72 PLAM-GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMR-LYIGSLHFNITED 129
A+ G ++ G I V T + +GN +G G + L + +L ++ TED
Sbjct: 376 NKALEEKQGAEIEGRSIFVDFTGEKSQNSGNK------KGPEGDSKVLVVNNLSYSATED 429
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188
LR +FE + + + GR+KG+ FI F SA+DAK A + N E+ GR +++
Sbjct: 430 SLREVFEKA-----TSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRL 483
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 87/169 (51%), Gaps = 18/169 (10%)
Query: 33 LEEFFSSVG-KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQP 91
L EFFS ++D+R+ K Y++F E V A+ L G+K+LG + ++
Sbjct: 253 LREFFSKKNLTIQDIRIGNSKK------FGYVDFSSEEEVEKALKLTGKKILGTEVKIEK 306
Query: 92 TQA-EKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDP 150
A +KN+ T N + R + L++ ++ ++ T + L+ IFE +I++
Sbjct: 307 AMAFDKNK---TAENKKERDS---RTLFVKNIPYSTTVEELQEIFE---NAKDIRIPTGK 357
Query: 151 DTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVG 199
D G +KG ++ F + D+A KA E+ G E+ GR + V +++++ G
Sbjct: 358 D-GSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFTGEKSQNSG 405
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVP 72
E D++ + LS L E F +R I N+ R KG A+IEF E
Sbjct: 411 EGDSKVLVVNNLSYSATEDSLREVFEKATSIR----IPQNQGRA-KGFAFIEFSSAEDAK 465
Query: 73 LAM-GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDML 131
AM N ++ G I ++ +Q + G + Q + L++ L + TE+ L
Sbjct: 466 DAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSK------TLFVRGLSEDTTEETL 519
Query: 132 RGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHS 165
+ F+ G + N +++ D DTG SKG+GF+ F +
Sbjct: 520 KEAFD--GSV-NARIVTDRDTGASKGFGFVDFST 550
>sp|Q9FVQ1|NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thaliana GN=NUCL1 PE=1 SV=1
Length = 557
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 16 ARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM 75
++T+F LS I D+E FF G+V DVR T F+G ++EF E A+
Sbjct: 296 SKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL 355
Query: 76 GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPR-------GTGG-PMRLYIGSLHFNIT 127
+G+ LLG I + Q R P P+ G GG ++++ +++
Sbjct: 356 EFHGRPLLGREIRLDIAQERGERG--ERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLS 413
Query: 128 ED----MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG 183
ED LR F G+I N+ + +D DTG SKG ++ F + K+ +LNG ++ G
Sbjct: 414 EDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS---EGKEKALELNGSDMGG 470
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 94/185 (50%), Gaps = 15/185 (8%)
Query: 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVP 72
E R ++ L + I L+++F G + +++ I +K + A++E+
Sbjct: 71 ETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIK-IMIDKNNKNVNYAFVEYHQSHDAN 129
Query: 73 LAM-GLNGQKLLG-IPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDM 130
+A+ LNG+++ I I Q++++ + +T L++G L+ N+ ++
Sbjct: 130 IALQTLNGKQIENNIVKINWAFQSQQSSSDDTF------------NLFVGDLNVNVDDET 177
Query: 131 LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190
LR F+ F + +M D TG S+GYGF++F S DDA+ A + + G +L GRP+++
Sbjct: 178 LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 237
Query: 191 VTDRN 195
R+
Sbjct: 238 AAKRD 242
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 93 QAEKNRAGNTLPNLQPRG--TGG----PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQL 146
QAE N+ N P++ P TGG LY+G+L ITED+L+ F+ G I NI++
Sbjct: 48 QAEDNQGEND-PSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKI 106
Query: 147 MVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNES--------- 197
M+D + ++ Y F+ +H + DA A + LNG ++ +K+ +S
Sbjct: 107 MIDKNN-KNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLF 165
Query: 198 VGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPPAAASALNLAQNAI 252
VG N+D + + A D + +M+ + G+ + ++ + AQNA+
Sbjct: 166 VGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 220
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 6/194 (3%)
Query: 7 DDLSPEERDAR---TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYI 63
DD EER+ IF L + L E F G V V +I T R +G ++
Sbjct: 74 DDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFV 133
Query: 64 EFKDPESVPLA-MGLNGQKLLGIPIIVQ--PTQAEKNRAGNTLPNLQPRGTGGPMRLYIG 120
E V A NG +L G + V P ++ + + R+Y+G
Sbjct: 134 TMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVG 193
Query: 121 SLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE 180
+L + + +D L +F GK+ + +++ D D+GRS+G+GF+T+ SA++ A E L+G +
Sbjct: 194 NLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVD 253
Query: 181 LAGRPMKVGTVTDR 194
L GR ++V R
Sbjct: 254 LNGRAIRVSPAEAR 267
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 100/180 (55%), Gaps = 9/180 (5%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG- 76
+F L + I + L E FS+ GK+ ++++ ++ KG A++ F++ + A+
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGS--KGYAFVHFQNQSAADRAIEE 156
Query: 77 LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFE 136
+NG+ L G + V + K+R L+ + + +YI + ++ ++ L+ +F
Sbjct: 157 MNGKLLKGCKVFVGRFKNRKDRE----AELRSKASEFT-NVYIKNFGGDMDDERLKDVFS 211
Query: 137 PFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
+GK ++++M D +G+SKG+GF++F S + AKKA E++NG ++ G+ + VG + E
Sbjct: 212 KYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVE 270
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 11/163 (6%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L++ FS GK V+++T + + + KG ++ F E+ A+ +NG+ + G I V
Sbjct: 206 LKDVFSKYGKTLSVKVMT-DSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGR 264
Query: 92 TQ------AEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQ 145
Q AE + L + RG G ++LYI +L I ++ LR F FG I ++
Sbjct: 265 AQKKVERQAELKQMFEQLKRERIRGCQG-VKLYIKNLDDTIDDEKLRNEFSSFGSISRVK 323
Query: 146 LMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188
+M + G+SKG+G I F S +DA KA ++NG L +P+ +
Sbjct: 324 VM--QEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSI 364
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 14/161 (8%)
Query: 37 FSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAE 95
FS+VG V +R+ TRR G AY+ F A+ +N + G I + +Q +
Sbjct: 30 FSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRD 89
Query: 96 KNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRS 155
L+ G G ++I +L +I L F FGKI + ++M D D G S
Sbjct: 90 --------AYLRRSGIGN---VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-S 136
Query: 156 KGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
KGY F+ F + A +A E++NG L G + VG +R +
Sbjct: 137 KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKD 177
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
LY+G LH ++TED+L F G + +I++ D T RS GY ++ F DA+KA + +
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 177 NGFELAGRPMKV 188
N + G+ +++
Sbjct: 72 NFDIIKGKSIRL 83
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 99/188 (52%), Gaps = 9/188 (4%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP-ES 70
E+ +T++ LS+ + + + FS +G ++ ++I T ++EF + +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHA 59
Query: 71 VPLAMGLNGQKLLGIPIIVQ----PTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
+NG+K++G + V P+ +K+ + +T+ + Q + +++G L I
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQ--RSQDHFHVFVGDLSPEI 117
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
T + ++ F PFG+I + +++ D TG+SKGYGF++F + DA+ A +Q+ G L GR +
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 187 KVGTVTDR 194
+ T +
Sbjct: 178 RTNWATRK 185
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 16/184 (8%)
Query: 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF---KDPES 70
+D +F LS I T D++ F+ G++ D R++ T + KG ++ F D E+
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 162
Query: 71 VPLAMG---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLH 123
MG L G+++ +P + NT + + + +Y G +
Sbjct: 163 AIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVT 222
Query: 124 FNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG 183
+TE ++R F PFG+I I++ D KGY F+ F S + A A +NG + G
Sbjct: 223 SGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSVNGTTIEG 276
Query: 184 RPMK 187
+K
Sbjct: 277 HVVK 280
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 99/188 (52%), Gaps = 9/188 (4%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP-ES 70
E+ +T++ LS+ + + + FS +G ++ ++I T ++EF + +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHA 59
Query: 71 VPLAMGLNGQKLLGIPIIVQ----PTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
+NG+K++G + V P+ +K+ + +T+ + Q + +++G L I
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQR--SQDHFHVFVGDLSPEI 117
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
T + ++ F PFG+I + +++ D TG+SKGYGF++F + DA+ A +Q+ G L GR +
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 187 KVGTVTDR 194
+ T +
Sbjct: 178 RTNWATRK 185
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 16/184 (8%)
Query: 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF---KDPES 70
+D +F LS I T D++ F+ G++ D R++ T + KG ++ F D E+
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 162
Query: 71 VPLAMG---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLH 123
MG L G+++ +P + NT + + + +Y G +
Sbjct: 163 AIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVT 222
Query: 124 FNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG 183
+TE ++R F PFG+I +++ V PD KGY F+ F+S + A A +NG + G
Sbjct: 223 SGLTEQLMRQTFSPFGQI--MEIRVFPD----KGYSFVRFNSHESAAHAIVSVNGTTIEG 276
Query: 184 RPMK 187
+K
Sbjct: 277 HVVK 280
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 9/172 (5%)
Query: 3 PAYSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAY 62
P S + + D +F LS + L ++FS G++R+ ++ T+R +G +
Sbjct: 7 PGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGF 66
Query: 63 IEFKDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSL 122
+ F DP SV +G +L + P A RA QP+ ++++G L
Sbjct: 67 VTFADPASVDKVLGQPHHELDSK--TIDPKVAFPRRA-------QPKMVTRTKKIFVGGL 117
Query: 123 HFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
N + ++ FE FGK+++ LM D T R +G+GF+TF + D +K E
Sbjct: 118 SANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 30/204 (14%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLIT-------CNKTRRFKG 59
DD P RT++ LS+ + + + FS +G + ++IT N + F
Sbjct: 4 DDGQP-----RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSV 58
Query: 60 I--------AYIEFKDP-ESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRG 110
+ ++EF + ++ +NG+K+LG + V N A T P+ Q +
Sbjct: 59 LQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV-------NWA--TTPSSQKKD 109
Query: 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAK 170
T +++G L IT + ++ F PFGKI + +++ D TG+SKGYGF++F++ DA+
Sbjct: 110 TSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE 169
Query: 171 KAQEQLNGFELAGRPMKVGTVTDR 194
A + G L GR ++ T +
Sbjct: 170 NAIVHMGGQWLGGRQIRTNWATRK 193
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 28/185 (15%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK---DPESVPLAM 75
+F LS I T D++ F+ GK+ D R++ T + KG ++ F D E+ + M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 76 GLNGQKLLG-------------IPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSL 122
G GQ L G P Q T ++ R + + P+ +Y G +
Sbjct: 176 G--GQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNC----TVYCGGI 229
Query: 123 HFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA 182
+T+ ++R F PFG+I +++ V P+ KGY F+ F + + A A +NG +
Sbjct: 230 ASGLTDQLMRQTFSPFGQI--MEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIE 283
Query: 183 GRPMK 187
G +K
Sbjct: 284 GHVVK 288
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 8/190 (4%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S ++ A IF L I + L + FS G + ++ T ++T + KG Y+ F++
Sbjct: 114 DPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVAT-DETGKSKGFGYVHFEE 172
Query: 68 PESVPLAM-GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
ES A+ LNG L G I V P ++K R + ++ T +YI +++
Sbjct: 173 DESASEAIDALNGMLLNGQEIYVGPHLSKKERE-SKFEEMKANFTN----VYIKNINTET 227
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
T+ + FGK D++ L P+ G +KG+GF+ F + +DA K E+LN E G+P+
Sbjct: 228 TDKEFEELVAKFGKTDSVVLERTPE-GENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPL 286
Query: 187 KVGTVTDRNE 196
V + E
Sbjct: 287 YVNRAQKKYE 296
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 13/180 (7%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-G 76
+++ L + L + FS +G V +R+ T+ G AY+ F D ++ A+
Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEK 95
Query: 77 LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFE 136
LN + G + +Q + P+L+ +G G ++I +LH +I L F
Sbjct: 96 LNFTPIKGKLCRIMWSQRD--------PSLRKKGAGN---IFIKNLHPDIDNKALYDTFS 144
Query: 137 PFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FG I + ++ D +TG+SKG+G++ F + A +A + LNG L G+ + VG + E
Sbjct: 145 VFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKE 203
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 90/202 (44%), Gaps = 17/202 (8%)
Query: 9 LSPEERDAR---------TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKG 59
LS +ER+++ ++ ++ ++ EE + GK V L + KG
Sbjct: 199 LSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGEN-KG 257
Query: 60 IAYIEFKDPE-SVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGN-----TLPNLQPRGTGG 113
++ F + E +V LN + G P+ V Q + R ++
Sbjct: 258 FGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQ 317
Query: 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173
+ L+I +L +I + L F P+G I + ++M + G+SKG+GF+ F + ++A KA
Sbjct: 318 GINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTT-ENGKSKGFGFVCFSTPEEATKAI 376
Query: 174 EQLNGFELAGRPMKVGTVTDRN 195
+ N +AG+P+ V ++
Sbjct: 377 TEKNQQIVAGKPLYVAIAQRKD 398
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
Query: 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVP 72
+ D +F LS + L ++FS G++R+ ++ T+R +G ++ F DP SV
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
Query: 73 LAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLR 132
+G +L + P A RA QP+ ++++G L N + ++
Sbjct: 77 KVLGQPHHELDSK--TIDPKVAFPRRA-------QPKMVTRTKKIFVGGLSANTVVEDVK 127
Query: 133 GIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
FE FGK+++ LM D T R +G+GF+TF + D +K E
Sbjct: 128 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 86/182 (47%), Gaps = 15/182 (8%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
+S +DA T++ L +++ L E F G V + + T + +G ++EF
Sbjct: 6 ISERNQDA-TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 69 ESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
E A+ +N KL G PI V N+A NL G ++IG+L I
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRV-------NKASAHNKNLD---VGA--NIFIGNLDPEID 112
Query: 128 EDMLRGIFEPFGKI-DNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
E +L F FG I ++M DPDTG SKGY FI F S D + A E +NG L RP+
Sbjct: 113 EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 172
Query: 187 KV 188
V
Sbjct: 173 TV 174
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+Y+G L ++E +L +F G + N + D TG+ +GYGF+ F S +DA A + +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 177 NGFELAGRPMKVGTVTDRNESVGGGPS----NLDTDEMER 212
N +L G+P++V + N+++ G + NLD + E+
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEK 114
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 86/182 (47%), Gaps = 15/182 (8%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
+S +DA T++ L +++ L E F G V + + T + +G ++EF
Sbjct: 6 ISERNQDA-TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 69 ESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
E A+ +N KL G PI V N+A NL G ++IG+L I
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRV-------NKASAHNKNLD---VGA--NIFIGNLDPEID 112
Query: 128 EDMLRGIFEPFGKI-DNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
E +L F FG I ++M DPDTG SKGY FI F S D + A E +NG L RP+
Sbjct: 113 EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 172
Query: 187 KV 188
V
Sbjct: 173 TV 174
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+Y+G L ++E +L +F G + N + D TG+ +GYGF+ F S +DA A + +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 177 NGFELAGRPMKVGTVTDRNESVGGGPS----NLDTDEMER 212
N +L G+P++V + N+++ G + NLD + E+
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEK 114
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 86/182 (47%), Gaps = 15/182 (8%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
+S +DA T++ L +++ L E F G V + + T + +G ++EF
Sbjct: 6 ISERNQDA-TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 69 ESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
E A+ +N KL G PI V N+A NL G ++IG+L I
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRV-------NKASAHNKNLD---VGA--NIFIGNLDPEID 112
Query: 128 EDMLRGIFEPFGKI-DNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
E +L F FG I ++M DPDTG SKGY FI F S D + A E +NG L RP+
Sbjct: 113 EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 172
Query: 187 KV 188
V
Sbjct: 173 TV 174
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+Y+G L ++E +L +F G + N + D TG+ +GYGF+ F S +DA A + +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 177 NGFELAGRPMKVGTVTDRNESVGGGPS----NLDTDEMER 212
N +L G+P++V + N+++ G + NLD + E+
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEK 114
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 15/200 (7%)
Query: 1 MRPAYSD-DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKG 59
+R YS D S A IF L + I + L + FSS G + + + + + + KG
Sbjct: 107 IRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK-VAVDSSGQSKG 165
Query: 60 IAYIEFKDPESVPLAM-GLNGQKLLGIPIIVQP--TQAEKNRAGNTLPNLQPRGTGGPMR 116
++++ + ES A+ LNG L + V P + E++ N
Sbjct: 166 YGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKF---------TN 216
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+Y+ +L + T+D L+ F +GKI + +M D + G+SKG+GF+ F +ADDA +A E L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275
Query: 177 NGFELAGRPMKVGTVTDRNE 196
NG + + VG ++E
Sbjct: 276 NGHKFDDKEWYVGRAQKKSE 295
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 94/201 (46%), Gaps = 16/201 (7%)
Query: 9 LSPEERDART-------IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIA 61
L +ERD+ ++ L++ DL+ F GK+ ++ + + KG
Sbjct: 200 LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSA-VVMKDGEGKSKGFG 258
Query: 62 YIEFKDPESVPLAM-GLNGQKLLGIPIIVQPTQAEKNRAGNTL----PNLQPRGTG-GPM 115
++ F++ + A+ LNG K V Q + R NL+
Sbjct: 259 FVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSS 318
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
LY+ +L +I+++ L+ IF PFG + + ++M DP+ G SKG GF+ F + ++A +A Q
Sbjct: 319 NLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQ 377
Query: 176 LNGFELAGRPMKVGTVTDRNE 196
L+G + +P+ V + R E
Sbjct: 378 LSGKMIESKPLYV-AIAQRKE 397
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172
G LY+G L FN+T+ L F G + +++ D T RS GYG++ F + DA +A
Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 173 QEQLNGFELAGRPMKVGTVTDRNESV 198
++LN L G+P++V + R+ SV
Sbjct: 94 IQELNYIPLYGKPIRV-MYSHRDPSV 118
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 9/185 (4%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLA-MGL 77
IF L + L E F G V V +I T R +G ++ E V A
Sbjct: 89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTL--------PNLQPRGTGGPMRLYIGSLHFNITED 129
NG +L G + V + R ++ + R+Y+G+L + + +D
Sbjct: 149 NGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQD 208
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
L +F GK+ + +++ D D+GRS+G+GF+T+ SA++ A E L+G +L GR ++V
Sbjct: 209 ALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 268
Query: 190 TVTDR 194
R
Sbjct: 269 PAEAR 273
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 51/76 (67%)
Query: 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
+++++G+L F+ L +FE G ++ ++++ D TGRS+G+GF+T S ++ + A +
Sbjct: 87 LKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQ 146
Query: 175 QLNGFELAGRPMKVGT 190
Q NG+EL GR ++V +
Sbjct: 147 QFNGYELDGRALRVNS 162
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 21/184 (11%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L 77
+F L + I + L + FS+ G + +++T + KG ++ ++ ES A+ +
Sbjct: 100 VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSS-KGFGFVHYETQESADKAIAKV 158
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHF-NITEDM----LR 132
NG + G + V P ++ K R G P + ++ F N++ED+ L+
Sbjct: 159 NGMMINGQKVFVGPFKSSKER-------------GQPTEVKFTNVFFKNLSEDVGPDQLK 205
Query: 133 GIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192
+ + +G+I NI +M D D G+SKG+GF F SA+ AK E NG G+P+ G
Sbjct: 206 ELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQ 264
Query: 193 DRNE 196
+ E
Sbjct: 265 KKIE 268
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 4/180 (2%)
Query: 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPES 70
P E +F LS+ + L+E G++ ++ ++ +K + KG + F+ E+
Sbjct: 182 PTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKS-KGFGFANFESAEA 240
Query: 71 VP-LAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITED 129
+ NG+ G PI Q + R + + G + LYI ++ +I D
Sbjct: 241 AKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQG--VNLYIKNIDDSIDND 298
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
LR +F FG I + +M D SKG+GF+ + + D+A +A ++NG + +P+ V
Sbjct: 299 KLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVA 358
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 13/182 (7%)
Query: 16 ARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM 75
+ +++ L + + L E F+ VG V ++R+ TRR AY+ + + A+
Sbjct: 9 SSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERAL 68
Query: 76 G-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGI 134
LN + G + +Q + P+L+ G G ++I +L I L
Sbjct: 69 DTLNNTPIRGKACRIMWSQRD--------PSLRKSGVGN---VFIKNLDKGIDHKALYDT 117
Query: 135 FEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194
F FG I + +++ D D SKG+GF+ + + + A KA ++NG + G+ + VG
Sbjct: 118 FSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSS 176
Query: 195 NE 196
E
Sbjct: 177 KE 178
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 11/196 (5%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L + ++ ++ + + L+E FS GK V+++ + + KG ++ ++
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPNGKSKGFGFVSYEK 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQ------AEKNRAGNTLPNLQPRGTGGPMRLYIG 120
E A+ +NG+++ G I V Q AE R L + G + LYI
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG-VNLYIK 299
Query: 121 SLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE 180
+L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG
Sbjct: 300 NLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 181 LAGRPMKVGTVTDRNE 196
+ +P+ V + E
Sbjct: 358 VGSKPLYVALAQRKEE 373
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 94/179 (52%), Gaps = 9/179 (5%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GL 77
+F L + I + L + FS+ G + +++ C++ KG A++ F+ E+ A+ +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYAFVHFETQEAADKAIEKM 158
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEP 137
NG L + V ++ K R + +YI + + ++ L+ +F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEF-----TNVYIKNFGEEVDDESLKELFSQ 213
Query: 138 FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FGK ++++M DP+ G+SKG+GF+++ +DA KA E++NG E++G+ + VG + E
Sbjct: 214 FGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG- 76
+++ L + L E FS G V +R+ TRR G AY+ F+ P A+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 77 LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFE 136
+N + G PI + +Q + P+L+ G G ++I +L +I L F
Sbjct: 72 MNFDVIKGKPIRIMWSQRD--------PSLRKSGVGN---VFIKNLDKSIDNKALYDTFS 120
Query: 137 PFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FG I + +++ D + SKGY F+ F + + A KA E++NG L R + VG R E
Sbjct: 121 AFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKE 178
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 8/192 (4%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
+ D +TI+ L Q + L FS G+V V++I +T + + ++EF
Sbjct: 76 IQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTH 135
Query: 69 ESVPLAM-GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
+ + NG + P QP + N AG + + TG +++G L ++T
Sbjct: 136 AAAEKVLQSYNGTMM---PNTEQPFRL--NWAGFSTGEKRAE-TGSDFSIFVGDLASDVT 189
Query: 128 EDMLRGIFEP-FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
+ MLR F + + +++VD +TG SKGYGF+ F + +A ++NG + R M
Sbjct: 190 DTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAM 249
Query: 187 KVGTVTDRNESV 198
++G T + S
Sbjct: 250 RIGVATPKKPSA 261
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 75/181 (41%), Gaps = 26/181 (14%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSS-VGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG 76
+IF L+ + L + F+S ++ +++ T KG ++ F D AM
Sbjct: 178 SIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMT 237
Query: 77 -LNG------QKLLGIPIIVQPTQAEKNRA------------GNTLPNLQPRGTGGPMRL 117
+NG +G+ +P+ E+ + G Q G +
Sbjct: 238 EMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTI 297
Query: 118 YIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLN 177
++G L +T++ LR F FG++ ++++ KG GF+ F A++A ++L+
Sbjct: 298 FVGGLDSEVTDEELRQSFNQFGEVVSVKIPA------GKGCGFVQFSDRSSAQEAIQKLS 351
Query: 178 G 178
G
Sbjct: 352 G 352
>sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1
Length = 636
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 23/214 (10%)
Query: 16 ARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM 75
++T+F LS +I D+E FF G+V DVRL + + FKG +IEF PE A+
Sbjct: 383 SKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDG-SFKGYGHIEFASPEEAQKAL 441
Query: 76 GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMR-LYIGSLHFNITED----M 130
+NG+ LLG + + E+ N+ P +G G R +Y+ ++ ED
Sbjct: 442 EMNGKLLLGRDVRLD-LANERGTPRNSNPGR--KGEGSQSRTIYVRGFSSSLGEDEIKKE 498
Query: 131 LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSA-DDAKKAQEQLNGFELAGRPMKVG 189
LR F G++ + + D +TG S+G+ +I S D+A QL+G E+ G + V
Sbjct: 499 LRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFDEA----LQLSGSEIGGGNIHVE 554
Query: 190 TVTDRNESVG---------GGPSNLDTDEMERAG 214
R+ G G P +D R G
Sbjct: 555 ESRPRDSDEGRSSNRAPARGAPRGRHSDRAPRGG 588
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKK 171
GG L+ G+L + I + F+ G++ +++L D G KGYG I F S ++A+K
Sbjct: 381 GGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSF-DDGSFKGYGHIEFASPEEAQK 439
Query: 172 AQEQLNGFELAGRPMKVGTVTDR 194
A E +NG L GR +++ +R
Sbjct: 440 ALE-MNGKLLLGRDVRLDLANER 461
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 13/164 (7%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+ S ++D +F LS +DL E+ S G+V D + T T R +G ++ FKD
Sbjct: 17 NASKNQQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKD 76
Query: 68 PESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
SV + N KL G ++ P +A+ L +P P ++++G L T
Sbjct: 77 AVSVDKVLETNEHKLDGK--LIDPKRAK------ALKGKEP-----PKKVFVGGLSPETT 123
Query: 128 EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKK 171
E+ ++ F FG+I+NI+L +D T +G+ F+T+ + KK
Sbjct: 124 EEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKK 167
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 13/180 (7%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG- 76
+++ +L + L E F+S+G V +R+ TRR G AY+ F + E A+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 77 LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFE 136
LN + G P + +Q + P+L+ GTG ++I +L I L F
Sbjct: 141 LNYTLIKGRPCRIMWSQRD--------PSLRKMGTG---NVFIKNLDPAIDNKALHDTFS 189
Query: 137 PFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FGKI + ++ VD + G +KGYGF+ F S + A A E +NG L + + VG R E
Sbjct: 190 AFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRE 248
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 85/177 (48%), Gaps = 8/177 (4%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L 77
++ L I ++ + F G++ + L+ ++ + +G ++ + + E A+ L
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVK-DQNDKPRGFGFVNYANHECAQKAVDEL 321
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLP-----NLQPRGTGGPMRLYIGSLHFNITEDMLR 132
N ++ G + V Q + R L+ + L+I +L + ++ L+
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 133 GIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
F FG I + ++M D + G+SKG+GF+ + + ++A KA ++N LAG+P+ V
Sbjct: 382 AEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 437
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 8/179 (4%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GL 77
+F L I + L + FS+ GK+ + + ++ KG ++ F ES A+ +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCK-VAVDELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEP 137
NG L + V + + R + + L+ T +YI +L ITE +F
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQ-SKVEALKANFT----NVYIKNLDTEITEQEFSDLFGQ 283
Query: 138 FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FG+I ++ L+ D + + +G+GF+ + + + A+KA ++LN E G+ + VG ++E
Sbjct: 284 FGEITSLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHE 341
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 51/74 (68%)
Query: 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
++L++G+L FN+ L +FE G ++ ++++ D TGRS+G+GF+T S + + A +
Sbjct: 91 LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQ 150
Query: 175 QLNGFELAGRPMKV 188
Q NG+EL GRP++V
Sbjct: 151 QFNGYELDGRPLRV 164
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 31/199 (15%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV-PLAMGL 77
+F L + + L + F S G V V +I T R +G ++ V A
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPM---------------------- 115
NG +L G P+ V AG P + + GP
Sbjct: 153 NGYELDGRPLRVN--------AGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGN 204
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+G+L + + + L +F GK+ +++ D D+GRSKG+GF+T+ S+ + + A +
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 176 LNGFELAGRPMKVGTVTDR 194
L+G +L GR ++V R
Sbjct: 265 LDGADLDGRQIRVSEAEAR 283
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 13/164 (7%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+ S ++D +F LS +DL E+ S G+V D + T T R +G ++ FKD
Sbjct: 21 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKD 80
Query: 68 PESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
SV + L KL G ++ P +A+ L +P P ++++G L + +
Sbjct: 81 AASVEKVLELKEHKLDGK--LIDPKRAK------ALKGKEP-----PKKVFVGGLSPDTS 127
Query: 128 EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKK 171
E+ ++ F FG+I+NI+L +D T +G+ FIT+ + KK
Sbjct: 128 EEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 171
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 13/164 (7%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+ S ++D +F LS +DL E+ S G+V D + T T R +G ++ FKD
Sbjct: 139 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKD 198
Query: 68 PESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
SV + L KL G ++ P +A+ L +P P ++++G L + +
Sbjct: 199 AASVDKVLELKEHKLDGK--LIDPKRAK------ALKGKEP-----PKKVFVGGLSPDTS 245
Query: 128 EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKK 171
E+ ++ F FG+I+NI+L +D T +G+ FIT+ + KK
Sbjct: 246 EEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 289
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPL 73
D +F LS + L E+F G+V++ ++ T+R +G ++ F D V
Sbjct: 17 HDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK 76
Query: 74 AMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRG 133
+ + +L + P A RA QP+ ++++G L N T + ++
Sbjct: 77 VLAQSRHELDSK--TIDPKVAFPRRA-------QPKMVTRTKKIFVGGLSVNTTVEDVKH 127
Query: 134 IFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
FE FGK+D+ LM D T R +G+GF+TF S D +K E
Sbjct: 128 YFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPL 73
D +F LS + L E+F G+V++ ++ T+R +G ++ F D V
Sbjct: 17 HDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK 76
Query: 74 AMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRG 133
+ + +L + P A RA QP+ ++++G L N T + ++
Sbjct: 77 VLAQSRHELDSK--TIDPKVAFPRRA-------QPKMVTRTKKIFVGGLSVNTTVEDVKH 127
Query: 134 IFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
FE FGK+D+ LM D T R +G+GF+TF S D +K E
Sbjct: 128 YFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPL 73
D +F LS + L E+F G+V++ ++ T+R +G ++ F D V
Sbjct: 17 HDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK 76
Query: 74 AMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRG 133
+ + +L + P A RA QP+ ++++G L N T + ++
Sbjct: 77 VLAQSRHELDSK--TIDPKVAFPRRA-------QPKMVTRTKKIFVGGLSVNTTVEDVKQ 127
Query: 134 IFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
FE FGK+D+ LM D T R +G+GF+TF S D +K E
Sbjct: 128 YFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 11/167 (6%)
Query: 10 SPEE--RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
SP E D +F LS + L ++F G + + ++ TRR +G ++ F D
Sbjct: 20 SPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSD 79
Query: 68 PESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
P SV + +L G V P A RA P+ ++++G L T
Sbjct: 80 PNSVDKVLTQGTHELDGK--KVDPKVAFPRRA-------HPKMVTRTKKIFVGGLSAPTT 130
Query: 128 EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
+ ++ FE FG I++ LM D T R +G+GF+TF S D K E
Sbjct: 131 LEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173
P +++IG L + + + LR F +G I +M DP T RS+G+GF+TF + K
Sbjct: 28 PGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVL 87
Query: 174 EQLNGFELAGR 184
Q EL G+
Sbjct: 88 TQ-GTHELDGK 97
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 14/168 (8%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+ S E DA +F LS +DL+++F+ G+V D + T R +G +I FKD
Sbjct: 66 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 125
Query: 68 PESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
SV + +L G ++ P +A + ++++G L+ T
Sbjct: 126 SSSVEKVLDQKEHRLDGR--VIDPKKAMAMKKDPV------------KKIFVGGLNPEAT 171
Query: 128 EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
E+ +R F FG+I+ I+L +DP + +G+ FITF D KK E+
Sbjct: 172 EEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 8/190 (4%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S ++ + IF L I + L + FS G + ++ T ++ + KG ++ F++
Sbjct: 117 DPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIAT-DENGKSKGFGFVHFEE 175
Query: 68 PESVPLAM-GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
+ A+ LNG L G I V P + K R + L + T LY+ +++
Sbjct: 176 EGAAKEAIDALNGMLLNGQEIYVAPHLSRKER-DSQLEETKAHYTN----LYVKNINSET 230
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
T++ + +F FG I + L D D G+ KG+GF+ + +DA KA E LN EL G +
Sbjct: 231 TDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKL 289
Query: 187 KVGTVTDRNE 196
VG +NE
Sbjct: 290 YVGRAQKKNE 299
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 13/185 (7%)
Query: 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVP 72
E + +++ L + L + FS +G V +R+ T+ G AY+ F D E+
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93
Query: 73 LAM-GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDML 131
A+ LN + G + +Q + P+L+ +G+G ++I +LH +I L
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRD--------PSLRKKGSGN---IFIKNLHPDIDNKAL 142
Query: 132 RGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191
F FG I + ++ D + G+SKG+GF+ F AK+A + LNG L G+ + V
Sbjct: 143 YDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPH 201
Query: 192 TDRNE 196
R E
Sbjct: 202 LSRKE 206
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 93/203 (45%), Gaps = 19/203 (9%)
Query: 9 LSPEERDAR---------TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKG 59
LS +ERD++ ++ ++ +E F+ G + L + + KG
Sbjct: 202 LSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASL-EKDADGKLKG 260
Query: 60 IAYIEF-KDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPN------LQPRGTG 112
++ + K ++V LN +L G + V Q +KN + L L+
Sbjct: 261 FGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ-KKNERMHVLKKQYEAYRLEKMAKY 319
Query: 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172
+ L++ +L ++ ++ L F P+G I + ++M + G+SKG+GF+ F + ++A KA
Sbjct: 320 QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKA 378
Query: 173 QEQLNGFELAGRPMKVGTVTDRN 195
+ N +AG+P+ V ++
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRKD 401
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 94/189 (49%), Gaps = 19/189 (10%)
Query: 6 SDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF 65
+++ SP R+ +F L+ L ++F G+V D ++ + T R +G ++ F
Sbjct: 152 AEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTF 211
Query: 66 KDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFN 125
K+P+ V M L G I+ P +A +P + T ++++G + +
Sbjct: 212 KNPKCVNEVMSKE-HHLDGK--IIDPKRA--------IPREEQEKTA---KMFVGGVPGD 257
Query: 126 ITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITF--HSADDAKKAQEQLNGFELAG 183
TE+ R F FG++ + LM+D DTGR +G+GF+T+ SA +A +Q + + G
Sbjct: 258 CTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYIT---IHG 314
Query: 184 RPMKVGTVT 192
+P++V T
Sbjct: 315 KPVEVKRAT 323
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 6/185 (3%)
Query: 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPES 70
PE + +F L+ + ++ L F G V +I +T + +G ++ +
Sbjct: 144 PEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203
Query: 71 VPLAM-GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITED 129
A+ N L G + V +R P PR R+Y+G+L +++
Sbjct: 204 AETAVEKFNRYDLNGRLLTVNKAAPRGSR-----PERAPRVYEPAFRVYVGNLPWDVDNG 258
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
L +F GK+ +++ D +TGRS+G+GF+T D+ +A L+G L GR ++V
Sbjct: 259 RLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318
Query: 190 TVTDR 194
+R
Sbjct: 319 VAEER 323
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 30/215 (13%)
Query: 2 RPAYSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIA 61
+P +S+DL +F L + + L F G V V +I + R +G
Sbjct: 81 QPRFSEDL--------KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFG 132
Query: 62 YIEFKDPESVPLA-MGLNGQKLLGIPIIVQ----PTQAEKN-----RAGNTLPNLQPRGT 111
++ E V A NG ++ G I V P + E + R GN+ G
Sbjct: 133 FVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGN 192
Query: 112 ---GGPM---------RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYG 159
GG R+Y+G+L + + + L+ +F G + + +++ D D+GRS+G+G
Sbjct: 193 SSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFG 252
Query: 160 FITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194
F+T+ SA + A + LNG +L GR ++V +R
Sbjct: 253 FVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 107 QPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSA 166
QPR + ++L++G+L F++ L G+FE G ++ ++++ D +GRS+G+GF+T +
Sbjct: 81 QPRFSE-DLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTK 139
Query: 167 DDAKKAQEQLNGFELAGRPMKVGT----VTDRNESVGGG 201
++ + A++Q NG+E+ GR ++V N S GGG
Sbjct: 140 EEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGG 178
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 11/186 (5%)
Query: 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPES 70
PEE +F L + + L F + G V +I +T R +G ++ E
Sbjct: 52 PEEA---KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEE 108
Query: 71 VPLAMGL-NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGP-MRLYIGSLHFNITE 128
A+ L NG + G + V A P PRG P R+Y+G+L +++
Sbjct: 109 AEKAVELLNGYDMDGRQLTVNKA------APRGSPERAPRGDFEPSCRVYVGNLPWDVDT 162
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188
L +F GK+ + +++ D +TGRS+G+GF+T S + A L+G L GR ++V
Sbjct: 163 SRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRV 222
Query: 189 GTVTDR 194
+R
Sbjct: 223 NVAEER 228
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 13/162 (8%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
S ++D +F LS +DL E+ S G+V D + T T R +G ++ FKD
Sbjct: 22 SKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAA 81
Query: 70 SVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITED 129
SV + L KL G ++ P +A+ L +P P ++++G L + +E+
Sbjct: 82 SVDKVLELKEHKLDGK--LIDPKRAK------ALKGKEP-----PKKVFVGGLSPDTSEE 128
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKK 171
++ F FG+I+NI+L +D T +G+ FIT+ + KK
Sbjct: 129 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 170
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 94/179 (52%), Gaps = 9/179 (5%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L 77
IF L + I + L + S+ G + ++ C++ KG ++ F+ E+ A+ +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVV-CDENGS-KGYGFVHFETHEAAERAIKKM 158
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEP 137
NG L G + V ++ K R L R P +YI + ++ ++ L+ +F
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAE----LGARAKEFP-NVYIKNFGEDMDDERLKDLFGK 213
Query: 138 FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FG ++++M D ++G+SKG+GF++F +DA+KA +++NG EL G+ + VG + E
Sbjct: 214 FGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 9/195 (4%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L++ F G V+++T +++ + KG ++ F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMR-----LYIGS 121
E A+ +NG++L G I V Q + R + R LY+ +
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 301 LDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 359 ATKPLYVALAQRKEE 373
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
LY+G LH ++TE ML F P G I +I++ D T S Y ++ F DA+ A + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 177 NGFELAGRPMKV 188
N + G+P+++
Sbjct: 73 NFDVIKGKPVRI 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,071,225
Number of Sequences: 539616
Number of extensions: 6062268
Number of successful extensions: 18232
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 251
Number of HSP's that attempted gapping in prelim test: 15685
Number of HSP's gapped (non-prelim): 2009
length of query: 370
length of database: 191,569,459
effective HSP length: 119
effective length of query: 251
effective length of database: 127,355,155
effective search space: 31966143905
effective search space used: 31966143905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)