Query psy2983
Match_columns 370
No_of_seqs 341 out of 2822
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 22:32:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0147|consensus 100.0 2.6E-45 5.6E-50 347.2 13.7 308 5-316 168-485 (549)
2 TIGR01622 SF-CC1 splicing fact 100.0 1.1E-42 2.3E-47 345.7 28.0 301 9-310 82-402 (457)
3 TIGR01645 half-pint poly-U bin 100.0 7.7E-40 1.7E-44 325.0 25.3 182 12-195 103-285 (612)
4 TIGR01642 U2AF_lg U2 snRNP aux 100.0 9.2E-37 2E-41 307.2 27.1 255 10-312 169-451 (509)
5 TIGR01628 PABP-1234 polyadenyl 100.0 3.5E-33 7.6E-38 284.1 28.2 274 18-313 2-318 (562)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4E-33 8.6E-38 268.0 23.1 219 15-246 2-329 (352)
7 KOG0124|consensus 100.0 3.6E-34 7.8E-39 258.3 13.3 178 17-196 114-292 (544)
8 TIGR01659 sex-lethal sex-letha 100.0 9.9E-32 2.1E-36 254.5 19.5 172 12-196 103-277 (346)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.2E-28 2.6E-33 245.6 28.5 220 15-246 1-331 (481)
10 TIGR01628 PABP-1234 polyadenyl 100.0 8E-29 1.7E-33 252.2 22.7 222 15-246 87-344 (562)
11 KOG0148|consensus 100.0 5.6E-29 1.2E-33 217.0 17.6 179 13-197 59-241 (321)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.5E-28 3.2E-33 236.3 21.6 181 15-195 88-350 (352)
13 KOG0145|consensus 100.0 6.8E-28 1.5E-32 209.0 17.8 208 16-236 41-325 (360)
14 TIGR01648 hnRNP-R-Q heterogene 100.0 3E-27 6.4E-32 235.0 21.8 208 15-246 57-287 (578)
15 KOG0144|consensus 99.9 7.4E-28 1.6E-32 222.0 11.9 179 6-197 24-209 (510)
16 KOG0120|consensus 99.9 1.3E-27 2.8E-32 230.0 11.8 253 8-312 167-441 (500)
17 KOG0117|consensus 99.9 2.9E-26 6.3E-31 212.5 16.4 196 14-228 81-294 (506)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.6E-25 7.9E-30 220.6 25.0 221 17-246 97-454 (481)
19 KOG0131|consensus 99.9 1.1E-26 2.4E-31 191.8 11.5 171 14-196 7-179 (203)
20 KOG0123|consensus 99.9 3.2E-24 6.9E-29 204.4 21.7 202 18-246 3-226 (369)
21 KOG0127|consensus 99.9 1.8E-24 4E-29 204.8 19.4 233 16-249 5-355 (678)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.8E-24 6.1E-29 216.5 20.0 180 14-193 293-501 (509)
23 KOG0148|consensus 99.9 1.4E-24 3E-29 189.6 14.7 191 13-245 3-217 (321)
24 TIGR01648 hnRNP-R-Q heterogene 99.9 5.4E-23 1.2E-27 204.7 17.6 166 15-196 137-309 (578)
25 KOG0145|consensus 99.9 8.1E-23 1.7E-27 177.5 15.9 179 15-193 126-357 (360)
26 KOG0123|consensus 99.9 1.2E-22 2.6E-27 193.6 17.4 225 13-246 73-329 (369)
27 KOG0109|consensus 99.9 3.1E-23 6.7E-28 182.9 11.9 149 18-197 4-153 (346)
28 KOG0117|consensus 99.9 1.4E-22 3E-27 188.2 14.0 168 14-197 162-334 (506)
29 TIGR01622 SF-CC1 splicing fact 99.9 8.7E-22 1.9E-26 195.9 20.6 175 15-193 185-447 (457)
30 KOG0127|consensus 99.9 4.7E-22 1E-26 188.5 16.2 180 16-196 117-380 (678)
31 KOG0110|consensus 99.8 5.4E-21 1.2E-25 186.8 11.3 173 18-194 517-693 (725)
32 KOG4205|consensus 99.8 1.7E-20 3.7E-25 173.0 12.2 175 15-197 5-179 (311)
33 KOG0146|consensus 99.8 1.5E-19 3.2E-24 157.9 9.6 180 15-195 18-366 (371)
34 KOG0144|consensus 99.8 2.5E-19 5.5E-24 165.9 10.1 182 14-196 122-506 (510)
35 TIGR01659 sex-lethal sex-letha 99.8 5.2E-18 1.1E-22 161.0 15.7 136 111-246 104-253 (346)
36 KOG4206|consensus 99.8 1.1E-17 2.3E-22 144.1 15.3 173 12-192 5-220 (221)
37 KOG0110|consensus 99.8 2.1E-17 4.6E-22 161.9 16.4 231 10-246 379-673 (725)
38 KOG1548|consensus 99.7 2.3E-17 4.9E-22 149.3 14.1 164 111-312 131-308 (382)
39 KOG0105|consensus 99.7 6.9E-17 1.5E-21 134.1 14.7 167 13-189 3-185 (241)
40 TIGR01645 half-pint poly-U bin 99.7 4.4E-17 9.5E-22 162.9 13.3 133 113-245 106-263 (612)
41 PLN03134 glycine-rich RNA-bind 99.7 3.1E-16 6.7E-21 130.8 11.6 85 112-196 32-116 (144)
42 KOG4211|consensus 99.7 1.2E-15 2.6E-20 144.1 15.7 173 12-191 6-179 (510)
43 PLN03134 glycine-rich RNA-bind 99.7 4.8E-16 1E-20 129.6 9.4 83 13-95 31-114 (144)
44 KOG0147|consensus 99.7 4.1E-16 8.9E-21 149.1 9.9 175 13-192 275-526 (549)
45 KOG4212|consensus 99.6 4.9E-15 1.1E-19 137.7 15.1 177 13-191 41-291 (608)
46 KOG1548|consensus 99.6 8.9E-14 1.9E-18 126.2 19.0 180 13-197 131-355 (382)
47 KOG0106|consensus 99.6 4.1E-15 9E-20 129.4 7.9 156 17-188 2-165 (216)
48 PF00076 RRM_1: RNA recognitio 99.6 1.3E-14 2.9E-19 105.5 9.1 70 117-187 1-70 (70)
49 KOG0131|consensus 99.6 8.6E-15 1.9E-19 121.6 8.3 118 112-229 7-133 (203)
50 KOG1457|consensus 99.6 5.6E-14 1.2E-18 120.2 12.4 166 13-182 31-274 (284)
51 PF00076 RRM_1: RNA recognitio 99.6 1.2E-14 2.5E-19 105.8 7.0 69 19-88 1-70 (70)
52 KOG1190|consensus 99.5 4.1E-14 8.9E-19 130.7 12.1 168 13-191 25-225 (492)
53 KOG0124|consensus 99.5 1.2E-14 2.5E-19 132.4 7.4 114 115-228 114-245 (544)
54 COG0724 RNA-binding proteins ( 99.5 1.1E-13 2.3E-18 127.1 13.5 158 16-173 115-284 (306)
55 KOG0120|consensus 99.5 2.2E-13 4.7E-18 132.1 14.4 179 13-191 286-489 (500)
56 KOG0122|consensus 99.5 7E-14 1.5E-18 121.4 9.5 84 111-194 186-269 (270)
57 PF14259 RRM_6: RNA recognitio 99.5 1.8E-13 3.9E-18 99.8 9.9 70 117-187 1-70 (70)
58 KOG0125|consensus 99.5 5.9E-14 1.3E-18 126.5 8.6 83 110-194 92-174 (376)
59 PLN03120 nucleic acid binding 99.5 1.1E-13 2.3E-18 123.8 9.6 78 15-95 3-80 (260)
60 KOG0122|consensus 99.5 1.1E-13 2.4E-18 120.1 9.1 82 14-95 187-269 (270)
61 PF14259 RRM_6: RNA recognitio 99.5 7.2E-14 1.6E-18 101.9 6.6 69 19-88 1-70 (70)
62 KOG0121|consensus 99.5 1.5E-13 3.3E-18 107.7 6.7 83 11-93 31-114 (153)
63 KOG0107|consensus 99.4 2.8E-13 6E-18 112.0 8.0 77 15-96 9-86 (195)
64 KOG0149|consensus 99.4 1.7E-13 3.6E-18 118.6 6.4 79 114-193 12-90 (247)
65 KOG0125|consensus 99.4 4E-13 8.7E-18 121.1 8.6 85 9-95 89-174 (376)
66 PLN03121 nucleic acid binding 99.4 4.9E-13 1.1E-17 117.7 8.9 78 15-95 4-81 (243)
67 KOG1190|consensus 99.4 3E-12 6.5E-17 118.5 14.0 168 16-193 297-490 (492)
68 KOG0126|consensus 99.4 6.6E-14 1.4E-18 116.2 2.7 85 113-197 34-118 (219)
69 KOG0126|consensus 99.4 6.7E-14 1.5E-18 116.2 2.4 83 14-96 33-116 (219)
70 KOG0111|consensus 99.4 2.4E-13 5.2E-18 116.0 5.6 98 112-209 8-105 (298)
71 KOG0149|consensus 99.4 3.6E-13 7.9E-18 116.5 6.4 79 16-94 12-90 (247)
72 PLN03120 nucleic acid binding 99.4 1.5E-12 3.3E-17 116.4 10.4 78 114-195 4-81 (260)
73 PLN03213 repressor of silencin 99.4 7.5E-13 1.6E-17 125.0 8.6 78 13-94 7-87 (759)
74 KOG0107|consensus 99.4 1.1E-12 2.3E-17 108.6 7.6 78 114-196 10-87 (195)
75 KOG0113|consensus 99.4 2.5E-12 5.3E-17 114.8 9.9 84 111-194 98-181 (335)
76 KOG0121|consensus 99.4 1.1E-12 2.4E-17 102.9 6.5 79 113-191 35-113 (153)
77 KOG0109|consensus 99.4 1.7E-12 3.7E-17 115.4 7.9 106 115-228 3-113 (346)
78 smart00362 RRM_2 RNA recogniti 99.4 4.8E-12 1E-16 91.5 8.9 72 116-189 1-72 (72)
79 KOG0113|consensus 99.3 3.2E-12 6.9E-17 114.0 8.7 81 13-93 98-179 (335)
80 KOG4207|consensus 99.3 1.9E-12 4.1E-17 109.7 6.6 86 10-95 7-93 (256)
81 KOG0114|consensus 99.3 5.1E-12 1.1E-16 95.5 8.2 80 14-96 16-96 (124)
82 PLN03213 repressor of silencin 99.3 3.7E-12 8E-17 120.4 9.1 77 113-193 9-87 (759)
83 smart00362 RRM_2 RNA recogniti 99.3 4.3E-12 9.3E-17 91.7 7.4 71 18-90 1-72 (72)
84 smart00360 RRM RNA recognition 99.3 5.5E-12 1.2E-16 90.8 7.9 71 119-189 1-71 (71)
85 KOG0130|consensus 99.3 3.9E-12 8.4E-17 100.7 7.2 84 113-196 71-154 (170)
86 KOG0130|consensus 99.3 2.5E-12 5.5E-17 101.7 5.1 83 13-95 69-152 (170)
87 PLN03121 nucleic acid binding 99.3 1.3E-11 2.9E-16 108.6 10.2 76 114-193 5-80 (243)
88 KOG0108|consensus 99.3 6.9E-12 1.5E-16 121.1 8.5 81 17-97 19-100 (435)
89 KOG4207|consensus 99.3 4.8E-12 1E-16 107.3 6.0 82 111-192 10-91 (256)
90 KOG1456|consensus 99.3 1E-10 2.2E-15 107.3 14.8 168 12-196 27-201 (494)
91 smart00360 RRM RNA recognition 99.3 9.8E-12 2.1E-16 89.4 6.6 70 21-90 1-71 (71)
92 KOG0114|consensus 99.3 1.9E-11 4.2E-16 92.4 8.1 78 114-194 18-95 (124)
93 KOG0111|consensus 99.3 4.8E-12 1E-16 108.2 5.2 85 13-97 7-92 (298)
94 KOG0108|consensus 99.3 9E-12 2E-16 120.3 7.5 82 115-196 19-100 (435)
95 KOG1365|consensus 99.3 7.4E-12 1.6E-16 115.0 6.1 175 15-191 160-359 (508)
96 cd00590 RRM RRM (RNA recogniti 99.2 8.9E-11 1.9E-15 85.2 9.5 74 116-190 1-74 (74)
97 cd00590 RRM RRM (RNA recogniti 99.2 5.6E-11 1.2E-15 86.3 7.8 73 18-91 1-74 (74)
98 KOG4212|consensus 99.2 3.1E-10 6.8E-15 106.1 14.1 71 115-190 537-607 (608)
99 KOG4206|consensus 99.2 1.8E-10 3.8E-15 99.7 11.6 84 113-199 8-95 (221)
100 COG0724 RNA-binding proteins ( 99.2 6.5E-11 1.4E-15 108.6 9.4 80 114-193 115-194 (306)
101 KOG4205|consensus 99.2 4.2E-11 9.2E-16 110.9 7.5 122 113-235 5-143 (311)
102 PF13893 RRM_5: RNA recognitio 99.2 1.8E-10 3.9E-15 80.0 8.2 56 131-191 1-56 (56)
103 KOG0105|consensus 99.2 1.5E-10 3.2E-15 96.7 8.8 113 113-228 5-150 (241)
104 smart00361 RRM_1 RNA recogniti 99.2 1.3E-10 2.9E-15 84.6 7.6 62 128-189 2-70 (70)
105 KOG0129|consensus 99.1 7.4E-10 1.6E-14 106.0 14.3 161 12-175 255-432 (520)
106 KOG4454|consensus 99.1 3E-11 6.5E-16 103.4 2.2 152 12-188 5-157 (267)
107 KOG4210|consensus 99.1 1.2E-10 2.5E-15 107.7 5.5 180 14-197 86-267 (285)
108 KOG1456|consensus 99.1 4.6E-09 9.9E-14 96.6 15.0 166 11-183 282-474 (494)
109 smart00361 RRM_1 RNA recogniti 99.0 4E-10 8.6E-15 82.1 5.9 60 30-89 2-69 (70)
110 PF15519 RBM39linker: linker b 99.0 9.8E-11 2.1E-15 85.0 2.0 71 207-289 3-73 (73)
111 KOG0128|consensus 99.0 2E-11 4.3E-16 122.6 -2.8 151 13-193 664-814 (881)
112 KOG4208|consensus 99.0 8.2E-10 1.8E-14 94.1 7.2 81 114-194 49-130 (214)
113 PF13893 RRM_5: RNA recognitio 99.0 5E-10 1.1E-14 77.8 4.5 55 33-92 1-56 (56)
114 KOG4211|consensus 99.0 5.3E-09 1.1E-13 99.6 12.4 173 14-190 101-354 (510)
115 KOG0415|consensus 99.0 9.3E-10 2E-14 100.4 6.2 82 112-193 237-318 (479)
116 KOG4208|consensus 98.9 2.1E-09 4.5E-14 91.7 6.0 84 12-95 45-130 (214)
117 KOG0415|consensus 98.9 2.5E-09 5.4E-14 97.7 5.7 83 13-95 236-319 (479)
118 KOG0153|consensus 98.9 8.5E-09 1.8E-13 94.2 8.5 80 9-94 221-302 (377)
119 KOG1365|consensus 98.8 9.3E-08 2E-12 88.4 15.0 175 12-188 56-237 (508)
120 KOG0112|consensus 98.8 4.8E-09 1E-13 106.2 5.2 162 12-195 368-532 (975)
121 KOG0226|consensus 98.8 6.5E-09 1.4E-13 91.2 4.3 166 18-191 98-267 (290)
122 KOG0146|consensus 98.7 1.5E-08 3.3E-13 89.4 5.1 84 12-95 281-365 (371)
123 KOG0132|consensus 98.7 2.6E-08 5.6E-13 99.5 6.8 75 115-195 422-496 (894)
124 KOG0153|consensus 98.7 6.1E-08 1.3E-12 88.7 8.4 81 107-193 221-302 (377)
125 KOG4660|consensus 98.7 3.4E-08 7.3E-13 95.6 6.1 174 5-192 64-248 (549)
126 KOG4661|consensus 98.7 3.8E-08 8.3E-13 95.0 6.4 83 14-96 403-486 (940)
127 KOG0132|consensus 98.6 4.2E-08 9E-13 98.0 6.1 76 14-95 419-495 (894)
128 KOG0533|consensus 98.6 1E-07 2.3E-12 85.2 8.0 85 111-196 80-164 (243)
129 KOG4307|consensus 98.6 1.8E-07 3.9E-12 92.4 8.9 184 7-192 302-512 (944)
130 KOG0116|consensus 98.6 1.8E-07 3.9E-12 90.2 8.4 82 13-94 285-366 (419)
131 KOG1457|consensus 98.6 2.6E-06 5.5E-11 73.7 14.3 81 113-193 33-117 (284)
132 KOG4209|consensus 98.5 1.1E-07 2.3E-12 85.3 4.7 85 11-95 96-180 (231)
133 KOG4661|consensus 98.4 1.2E-06 2.5E-11 85.0 8.0 80 114-193 405-484 (940)
134 KOG0226|consensus 98.4 2.8E-07 6E-12 81.1 3.5 85 10-94 184-269 (290)
135 KOG0128|consensus 98.3 4.7E-08 1E-12 98.8 -1.8 201 13-226 568-769 (881)
136 KOG4676|consensus 98.3 1.8E-07 3.8E-12 86.8 2.0 164 17-185 8-217 (479)
137 PF04059 RRM_2: RNA recognitio 98.3 2.1E-06 4.5E-11 66.0 7.4 77 17-93 2-85 (97)
138 KOG4209|consensus 98.3 1.6E-06 3.5E-11 77.7 7.7 82 112-194 99-180 (231)
139 KOG0116|consensus 98.3 1.3E-06 2.9E-11 84.3 7.6 82 115-197 289-370 (419)
140 PF04059 RRM_2: RNA recognitio 98.3 3.4E-06 7.5E-11 64.8 8.2 78 115-192 2-85 (97)
141 KOG0533|consensus 98.3 1.5E-06 3.3E-11 77.8 7.1 81 13-94 80-161 (243)
142 KOG4454|consensus 98.3 2.6E-07 5.6E-12 79.5 2.1 108 114-225 9-116 (267)
143 KOG4660|consensus 98.2 7E-07 1.5E-11 86.7 3.7 70 113-187 74-143 (549)
144 KOG0151|consensus 98.1 5.3E-06 1.2E-10 82.5 6.3 85 10-94 168-256 (877)
145 KOG2193|consensus 98.0 3.8E-07 8.2E-12 85.4 -3.0 149 17-191 2-154 (584)
146 KOG0106|consensus 98.0 4.2E-06 9.1E-11 73.4 3.5 70 116-193 3-72 (216)
147 KOG0151|consensus 98.0 1.4E-05 3.1E-10 79.5 7.4 80 114-193 174-256 (877)
148 PF11608 Limkain-b1: Limkain b 97.8 7.4E-05 1.6E-09 55.0 6.5 69 115-193 3-76 (90)
149 KOG1995|consensus 97.8 2.3E-05 5E-10 72.6 4.1 84 112-195 64-155 (351)
150 PF11608 Limkain-b1: Limkain b 97.7 4.7E-05 1E-09 56.0 4.3 68 17-94 3-76 (90)
151 PF08777 RRM_3: RNA binding mo 97.6 0.00016 3.4E-09 56.8 5.5 69 115-189 2-75 (105)
152 KOG1995|consensus 97.5 0.0001 2.2E-09 68.4 4.2 84 11-94 61-153 (351)
153 KOG4676|consensus 97.4 0.0002 4.4E-09 66.9 4.3 76 115-191 8-86 (479)
154 KOG4307|consensus 97.3 0.00064 1.4E-08 68.0 7.9 77 113-190 866-943 (944)
155 KOG4849|consensus 97.3 0.00018 3.9E-09 66.3 3.2 78 114-191 80-159 (498)
156 KOG4210|consensus 97.3 0.00016 3.4E-09 67.1 2.9 82 15-96 183-265 (285)
157 COG5175 MOT2 Transcriptional r 97.2 0.0005 1.1E-08 63.2 5.4 113 17-134 115-240 (480)
158 PF08777 RRM_3: RNA binding mo 97.2 0.001 2.2E-08 52.2 6.4 67 18-90 3-75 (105)
159 KOG1996|consensus 97.2 0.00017 3.8E-09 64.9 2.3 41 265-310 276-316 (378)
160 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00056 1.2E-08 46.6 4.2 53 16-75 1-53 (53)
161 KOG2314|consensus 97.2 0.00081 1.7E-08 65.8 6.8 79 114-193 58-143 (698)
162 KOG3152|consensus 97.1 0.00018 3.9E-09 63.8 1.6 71 115-185 75-157 (278)
163 KOG1855|consensus 96.9 0.0008 1.7E-08 63.8 3.9 75 5-79 220-307 (484)
164 COG5175 MOT2 Transcriptional r 96.9 0.0023 4.9E-08 59.0 6.2 79 114-192 114-201 (480)
165 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0017 3.8E-08 50.2 4.6 78 14-92 4-89 (100)
166 KOG0115|consensus 96.8 0.0026 5.7E-08 56.6 5.9 99 71-190 7-110 (275)
167 KOG0129|consensus 96.7 0.0044 9.5E-08 60.4 7.3 70 8-77 362-432 (520)
168 KOG3152|consensus 96.6 0.0012 2.6E-08 58.7 2.5 74 13-86 71-157 (278)
169 PF14605 Nup35_RRM_2: Nup53/35 96.6 0.0035 7.7E-08 42.6 4.3 52 115-173 2-53 (53)
170 KOG1996|consensus 96.6 0.0051 1.1E-07 55.7 6.1 65 128-192 300-365 (378)
171 KOG2314|consensus 96.5 0.0055 1.2E-07 60.2 6.5 76 14-90 56-139 (698)
172 KOG4849|consensus 96.4 0.0016 3.5E-08 60.2 2.1 74 17-90 81-157 (498)
173 KOG1855|consensus 96.4 0.0039 8.4E-08 59.3 4.7 68 112-179 229-309 (484)
174 PF08952 DUF1866: Domain of un 96.3 0.009 2E-07 49.2 5.7 57 31-95 51-107 (146)
175 KOG0112|consensus 96.1 0.0029 6.4E-08 65.2 1.9 110 115-225 373-487 (975)
176 PF08675 RNA_bind: RNA binding 96.1 0.013 2.9E-07 43.2 4.7 54 14-76 7-60 (87)
177 PF08952 DUF1866: Domain of un 96.0 0.024 5.2E-07 46.7 6.7 57 129-194 51-107 (146)
178 KOG2416|consensus 96.0 0.0047 1E-07 61.0 2.8 77 11-93 439-520 (718)
179 PF05172 Nup35_RRM: Nup53/35/4 95.9 0.023 5.1E-07 44.0 5.9 75 115-191 7-89 (100)
180 KOG2193|consensus 95.8 0.006 1.3E-07 57.9 2.5 105 115-225 2-112 (584)
181 PF07576 BRAP2: BRCA1-associat 95.6 0.083 1.8E-06 41.7 7.8 77 6-84 3-81 (110)
182 PF08675 RNA_bind: RNA binding 95.4 0.093 2E-06 38.8 7.0 55 115-178 10-64 (87)
183 PF10309 DUF2414: Protein of u 95.0 0.087 1.9E-06 36.9 5.7 55 114-176 5-62 (62)
184 PF03467 Smg4_UPF3: Smg-4/UPF3 94.8 0.092 2E-06 45.3 6.6 79 114-192 7-96 (176)
185 KOG2202|consensus 94.8 0.011 2.5E-07 52.7 1.0 62 129-191 83-145 (260)
186 KOG0804|consensus 94.5 0.3 6.5E-06 47.2 9.6 68 15-84 73-142 (493)
187 KOG2416|consensus 94.2 0.046 1E-06 54.3 3.8 75 112-192 442-520 (718)
188 KOG2202|consensus 93.9 0.015 3.3E-07 51.9 -0.2 62 31-93 83-146 (260)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 93.4 0.056 1.2E-06 46.6 2.5 71 14-84 5-82 (176)
190 PF07292 NID: Nmi/IFP 35 domai 93.3 0.059 1.3E-06 40.6 2.1 72 61-136 1-74 (88)
191 PF10309 DUF2414: Protein of u 92.8 0.32 7E-06 34.0 5.1 52 16-76 5-60 (62)
192 PF07576 BRAP2: BRCA1-associat 92.7 1.3 2.8E-05 35.0 9.0 67 115-183 14-81 (110)
193 KOG0115|consensus 92.0 0.13 2.8E-06 46.1 2.8 59 17-76 32-90 (275)
194 KOG2135|consensus 91.5 0.19 4.1E-06 48.8 3.5 77 13-95 369-446 (526)
195 KOG4285|consensus 91.4 0.76 1.6E-05 42.2 7.1 65 16-87 197-261 (350)
196 PF04847 Calcipressin: Calcipr 91.4 0.52 1.1E-05 40.9 5.9 61 127-193 8-70 (184)
197 PF15023 DUF4523: Protein of u 90.5 0.52 1.1E-05 38.6 4.7 74 13-93 83-160 (166)
198 KOG2253|consensus 89.0 0.29 6.3E-06 49.5 2.7 70 112-190 38-107 (668)
199 KOG2068|consensus 88.6 0.14 3.1E-06 47.6 0.3 76 17-92 78-160 (327)
200 PF15023 DUF4523: Protein of u 88.6 0.93 2E-05 37.2 4.8 70 114-191 86-159 (166)
201 KOG4574|consensus 88.5 0.22 4.7E-06 51.7 1.4 71 117-193 301-373 (1007)
202 KOG2591|consensus 87.8 1 2.2E-05 44.8 5.4 69 115-190 176-248 (684)
203 KOG2068|consensus 87.7 0.26 5.7E-06 45.9 1.4 79 114-193 77-162 (327)
204 KOG2135|consensus 85.7 0.44 9.6E-06 46.3 1.7 72 117-195 375-447 (526)
205 KOG0804|consensus 83.5 3.7 8E-05 40.0 6.8 68 114-183 74-142 (493)
206 PF11767 SET_assoc: Histone ly 82.2 5.3 0.00011 28.4 5.6 56 124-188 10-65 (66)
207 PF14111 DUF4283: Domain of un 81.7 3.2 6.9E-05 34.4 5.2 121 15-147 14-138 (153)
208 PF04847 Calcipressin: Calcipr 81.6 4.1 8.8E-05 35.3 5.9 60 29-94 8-70 (184)
209 PF03880 DbpA: DbpA RNA bindin 80.2 5.6 0.00012 28.8 5.4 59 124-191 11-74 (74)
210 KOG2318|consensus 80.1 5.7 0.00012 39.9 6.9 129 12-191 170-305 (650)
211 KOG2591|consensus 77.9 4.2 9.1E-05 40.6 5.2 68 14-88 173-245 (684)
212 KOG4574|consensus 74.2 1.9 4.1E-05 45.1 1.9 73 15-93 297-372 (1007)
213 PF03880 DbpA: DbpA RNA bindin 73.8 13 0.00028 26.8 5.9 57 26-91 11-73 (74)
214 KOG4285|consensus 73.6 5.9 0.00013 36.6 4.7 71 116-194 199-270 (350)
215 KOG2253|consensus 73.5 2 4.4E-05 43.7 1.9 73 10-91 34-107 (668)
216 KOG4483|consensus 72.4 7.5 0.00016 37.3 5.2 63 10-79 385-448 (528)
217 PF11767 SET_assoc: Histone ly 70.1 14 0.00029 26.3 5.0 55 26-89 10-65 (66)
218 PLN02401 diacylglycerol o-acyl 63.2 0.12 2.7E-06 50.5 -8.8 27 310-336 159-185 (446)
219 KOG4410|consensus 58.7 32 0.0007 31.6 6.3 51 16-71 330-380 (396)
220 PF03468 XS: XS domain; Inter 57.7 17 0.00037 28.9 4.1 50 18-70 10-68 (116)
221 smart00596 PRE_C2HC PRE_C2HC d 56.2 12 0.00026 26.7 2.6 63 129-194 2-65 (69)
222 PLN03242 diacylglycerol o-acyl 53.0 0.12 2.6E-06 50.1 -10.6 28 310-337 134-161 (410)
223 TIGR03636 L23_arch archaeal ri 52.2 72 0.0016 23.4 6.2 55 18-75 15-71 (77)
224 KOG4213|consensus 48.5 12 0.00025 32.1 1.7 81 4-88 93-180 (205)
225 COG2450 Uncharacterized conser 48.1 14 0.00031 29.5 2.1 33 286-318 77-109 (124)
226 PRK14548 50S ribosomal protein 47.7 88 0.0019 23.3 6.2 55 18-75 22-78 (84)
227 KOG4483|consensus 47.5 47 0.001 32.1 5.7 58 111-175 388-446 (528)
228 PF10567 Nab6_mRNP_bdg: RNA-re 45.7 22 0.00048 32.9 3.2 164 14-178 13-213 (309)
229 PF07530 PRE_C2HC: Associated 45.1 27 0.00058 24.9 3.0 63 129-194 2-65 (68)
230 KOG4410|consensus 44.8 58 0.0013 30.0 5.7 47 115-166 331-377 (396)
231 KOG4019|consensus 42.8 19 0.0004 30.9 2.1 74 115-194 11-90 (193)
232 smart00596 PRE_C2HC PRE_C2HC d 41.9 1.1E+02 0.0025 21.8 5.6 62 31-94 2-64 (69)
233 COG5193 LHP1 La protein, small 41.2 7.6 0.00016 37.3 -0.4 62 14-75 172-243 (438)
234 PF07530 PRE_C2HC: Associated 40.2 1.2E+02 0.0026 21.6 5.7 62 31-94 2-64 (68)
235 PF07292 NID: Nmi/IFP 35 domai 37.5 17 0.00038 27.3 1.1 25 14-38 50-74 (88)
236 PF00586 AIRS: AIR synthase re 37.4 25 0.00054 26.5 2.0 27 280-306 63-89 (96)
237 COG5638 Uncharacterized conser 36.0 1.4E+02 0.003 29.1 6.9 42 10-51 140-186 (622)
238 KOG2891|consensus 35.4 30 0.00065 31.6 2.4 34 16-49 149-194 (445)
239 PF10567 Nab6_mRNP_bdg: RNA-re 33.6 66 0.0014 29.9 4.3 79 114-192 15-106 (309)
240 PRK08230 tartrate dehydratase 30.4 79 0.0017 29.6 4.3 53 285-337 218-278 (299)
241 PF06936 Selenoprotein_S: Sele 29.9 17 0.00038 31.6 0.0 37 289-325 21-57 (190)
242 PF00522 VPR: VPR/VPX protein; 29.2 49 0.0011 25.4 2.3 20 285-304 17-36 (96)
243 KOG2891|consensus 28.9 55 0.0012 30.0 3.0 38 111-148 146-195 (445)
244 PF15513 DUF4651: Domain of un 27.5 1.3E+02 0.0027 21.1 3.9 19 31-49 9-27 (62)
245 COG0050 TufB GTPases - transla 26.1 1.1E+02 0.0024 28.7 4.5 35 271-307 130-164 (394)
246 COG1951 TtdA Tartrate dehydrat 25.7 1.1E+02 0.0024 28.5 4.4 38 288-325 219-256 (297)
247 PF13043 DUF3903: Domain of un 24.6 56 0.0012 20.0 1.5 14 293-306 9-23 (40)
248 PF08776 VASP_tetra: VASP tetr 24.1 73 0.0016 20.1 2.0 16 288-303 7-22 (40)
249 KOG2295|consensus 23.7 17 0.00037 36.5 -1.3 73 115-187 232-304 (648)
250 PF12274 DUF3615: Protein of u 23.1 95 0.0021 23.5 3.0 19 317-335 23-41 (96)
251 PF02714 DUF221: Domain of unk 22.5 88 0.0019 29.4 3.3 37 159-197 1-37 (325)
252 PF03439 Spt5-NGN: Early trans 21.7 1.5E+02 0.0032 21.9 3.7 25 155-179 43-67 (84)
253 COG5353 Uncharacterized protei 21.5 3.9E+02 0.0086 22.3 6.3 56 15-70 86-154 (161)
254 smart00540 LEM in nuclear memb 21.1 69 0.0015 20.7 1.5 15 295-309 9-23 (44)
255 KOG4365|consensus 20.8 29 0.00062 34.0 -0.4 75 17-92 4-79 (572)
256 PF05274 Baculo_E25: Occlusion 20.3 27 0.00059 29.5 -0.5 13 318-330 157-169 (182)
No 1
>KOG0147|consensus
Probab=100.00 E-value=2.6e-45 Score=347.21 Aligned_cols=308 Identities=62% Similarity=0.974 Sum_probs=260.0
Q ss_pred CCCCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCC
Q psy2983 5 YSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLG 84 (370)
Q Consensus 5 ~~~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g 84 (370)
.+..+.+.+|+.||||+..|+..++..+|.+||+.+|+|.+|+++.|+.+++++|.|||||.+.+.+..|+.|.|+.+.|
T Consensus 168 ~~~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg 247 (549)
T KOG0147|consen 168 ASRILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLG 247 (549)
T ss_pred ccccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccC
Confidence 34667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecccccccccCCCCCCCCCCCCCCCce-EEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEE
Q psy2983 85 IPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITF 163 (370)
Q Consensus 85 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f 163 (370)
.+|.|+.+..++++.....+.........+.. ||||||.+++++++|+.+|++||.|..|.+++|.++|.++||||++|
T Consensus 248 ~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f 327 (549)
T KOG0147|consen 248 VPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITF 327 (549)
T ss_pred ceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEE
Confidence 99999999999888655555445444444444 99999999999999999999999999999999988999999999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeEEEEEeecCCCCcCCCCCCCCHHHHHHhcccCCceeeeeeeeccccCCCCCChHHHHH
Q psy2983 164 HSADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPPAAAS 243 (370)
Q Consensus 164 ~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~a~~ 243 (370)
.+.++|.+|+..|||.++.|+.|+|.....+...........+.+.....+..+|..+..|+|.++..+.+.+.+..+..
T Consensus 328 ~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~ 407 (549)
T KOG0147|consen 328 VNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAIS 407 (549)
T ss_pred ecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhh
Confidence 99999999999999999999999999988776654333344445555667778888888999999999999888877766
Q ss_pred HHhhhcccccCC---------CCCCCCCCCCCCCCCceEEeecCCCCCCCCCchhhHHhHHHHHHHHhhcCceeeEEEEE
Q psy2983 244 ALNLAQNAILNS---------STPQVSSSTAPPIATQCFLLANMFDPATETNPTWDVEIRDDVIEECNKHGVGASTVCFI 314 (370)
Q Consensus 244 a~~~~~~~~~~p---------~~~~~~~~~~~~~ps~vl~L~Nm~~~~~l~~d~~~~ei~eDv~~Ec~kyG~~~~~~~~~ 314 (370)
++.+........ ...++...+....||+|++|.|||||.+++.+.|..||+|||.|||.|||. +|.|
T Consensus 408 ~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~----v~hi 483 (549)
T KOG0147|consen 408 ALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGK----VCHI 483 (549)
T ss_pred HHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCC----eeEE
Confidence 665432211111 111111123334899999999999999999999999999999999999996 5777
Q ss_pred EE
Q psy2983 315 YS 316 (370)
Q Consensus 315 y~ 316 (370)
||
T Consensus 484 ~v 485 (549)
T KOG0147|consen 484 FV 485 (549)
T ss_pred EE
Confidence 76
No 2
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.1e-42 Score=345.72 Aligned_cols=301 Identities=49% Similarity=0.747 Sum_probs=213.4
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEE
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPII 88 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~ 88 (370)
.++.+++.++|||+|||..+++++|+++|+.||.|.+|.+++|+.+++++|||||+|.+.++|.+|++++|..+.|++|.
T Consensus 82 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~ 161 (457)
T TIGR01622 82 LTEAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPII 161 (457)
T ss_pred cCccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHH
Q psy2983 89 VQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADD 168 (370)
Q Consensus 89 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~ 168 (370)
|+.+..+............ .......+|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++
T Consensus 162 v~~~~~~~~~~~~~~~~~~-~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 162 VQSSQAEKNRAAKAATHQP-GDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred EeecchhhhhhhhcccccC-CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 9987655443322111111 111236899999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEEeecCCCCcCCCCCCCCHHHHHHhcccCCceeeeeeeeccccCC---CCCChHHHHHHH
Q psy2983 169 AKKAQEQLNGFELAGRPMKVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGT---GLELPPAAASAL 245 (370)
Q Consensus 169 a~~A~~~l~g~~i~g~~l~V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~---~~~~~~~a~~a~ 245 (370)
|.+|+..|+|..+.|++|+|.++.+...............................++..+.... +...++....+.
T Consensus 241 A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T TIGR01622 241 AKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIA 320 (457)
T ss_pred HHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhh
Confidence 99999999999999999999998643222111000000000000000001111111111111111 111111111111
Q ss_pred hhhcc---c--------------ccCCCCCCCCCCCCCCCCCceEEeecCCCCCCCCCchhhHHhHHHHHHHHhhcCcee
Q psy2983 246 NLAQN---A--------------ILNSSTPQVSSSTAPPIATQCFLLANMFDPATETNPTWDVEIRDDVIEECNKHGVGA 308 (370)
Q Consensus 246 ~~~~~---~--------------~~~p~~~~~~~~~~~~~ps~vl~L~Nm~~~~~l~~d~~~~ei~eDv~~Ec~kyG~~~ 308 (370)
.|... . .+....+...+....+.+++||+|.|||++.++.++.||+||++||++||++||.+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~ 400 (457)
T TIGR01622 321 LMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVV 400 (457)
T ss_pred hhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCee
Confidence 11100 0 000001111112224578999999999999999999999999999999999999875
Q ss_pred eE
Q psy2983 309 ST 310 (370)
Q Consensus 309 ~~ 310 (370)
.+
T Consensus 401 ~v 402 (457)
T TIGR01622 401 HI 402 (457)
T ss_pred EE
Confidence 43
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=7.7e-40 Score=324.95 Aligned_cols=182 Identities=25% Similarity=0.446 Sum_probs=158.7
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEe
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQ 90 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~ 90 (370)
.....++|||+|||.++++++|+++|+.||+|.+|++++|+.+++++|||||+|.+.++|.+|++ ++|..+.|++|+|.
T Consensus 103 a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 103 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred hhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 34567899999999999999999999999999999999999999999999999999999999995 99999999999998
Q ss_pred cccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHH
Q psy2983 91 PTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAK 170 (370)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~ 170 (370)
++........ ............++|||+|||+++++++|+++|+.||.|.++++.+++.+|+++|||||+|.+.++|.
T Consensus 183 rp~~~p~a~~--~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 183 RPSNMPQAQP--IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred cccccccccc--ccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 7543221110 00011111234578999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEEeecCC
Q psy2983 171 KAQEQLNGFELAGRPMKVGTVTDRN 195 (370)
Q Consensus 171 ~A~~~l~g~~i~g~~l~V~~~~~~~ 195 (370)
+|+..||+..++|+.|+|.++..+.
T Consensus 261 kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 261 EAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHHHhCCCeeCCeEEEEEecCCCc
Confidence 9999999999999999999987543
No 4
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=9.2e-37 Score=307.18 Aligned_cols=255 Identities=22% Similarity=0.314 Sum_probs=193.4
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcC------------CCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhc
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSV------------GKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGL 77 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~------------G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l 77 (370)
++.++..|+|||+|||+.+|+++|+++|+.+ +.|..+.+ ++.+|||||+|.+.++|..||+|
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l 242 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMAL 242 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcC
Confidence 4567889999999999999999999999974 34555544 34589999999999999999999
Q ss_pred cCCccCCeeEEEecccccccccCCC------CC----------CCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCce
Q psy2983 78 NGQKLLGIPIIVQPTQAEKNRAGNT------LP----------NLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKI 141 (370)
Q Consensus 78 ~g~~i~g~~l~v~~~~~~~~~~~~~------~~----------~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i 141 (370)
+|..|.|++|+|.++.......... .+ ..........++|||+|||..+++++|+++|+.||.|
T Consensus 243 ~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred CCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 9999999999998765433111000 00 0011123345799999999999999999999999999
Q ss_pred eeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecCCCCcCCCCCCCCHHHHHHhcccCCcee
Q psy2983 142 DNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATG 221 (370)
Q Consensus 142 ~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 221 (370)
..+.++++..+|.++|||||+|.+.++|..|+..|+|..|+|+.|.|.++........ .+... ....+.
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~-----~~~~~------~~~~~~ 391 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQAT-----IDTSN------GMAPVT 391 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCC-----ccccc------cccccc
Confidence 9999999988999999999999999999999999999999999999999764332211 00000 000000
Q ss_pred eeeeeeccccCCCCCChHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCceEEeecCCCCCCCCCchhhHHhHHHHHHHH
Q psy2983 222 RLQLMFKLAEGTGLELPPAAASALNLAQNAILNSSTPQVSSSTAPPIATQCFLLANMFDPATETNPTWDVEIRDDVIEEC 301 (370)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~a~~a~~~~~~~~~~p~~~~~~~~~~~~~ps~vl~L~Nm~~~~~l~~d~~~~ei~eDv~~Ec 301 (370)
.. .+...+.. ......|++||+|.||+++++|.+|++|++|.+||++||
T Consensus 392 ---~~---------------------------~~~~~~~~-~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f 440 (509)
T TIGR01642 392 ---LL---------------------------AKALSQSI-LQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEF 440 (509)
T ss_pred ---cc---------------------------cccchhhh-ccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHH
Confidence 00 00000000 012345799999999999999999999999999999999
Q ss_pred hhcCceeeEEE
Q psy2983 302 NKHGVGASTVC 312 (370)
Q Consensus 302 ~kyG~~~~~~~ 312 (370)
++||.+..+.+
T Consensus 441 ~~~G~v~~v~i 451 (509)
T TIGR01642 441 SKYGPLINIVI 451 (509)
T ss_pred HhcCCeeEEEe
Confidence 99999776544
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.5e-33 Score=284.12 Aligned_cols=274 Identities=23% Similarity=0.349 Sum_probs=217.2
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecccccc
Q psy2983 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEK 96 (370)
Q Consensus 18 ~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~~~~ 96 (370)
+|||+|||.++||++|+++|++||+|.+|++.+|..+++++|||||+|.+.++|.+|++ +++..+.|++|+|.++....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999999999999999999999999999995 99999999999999876432
Q ss_pred cccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHh
Q psy2983 97 NRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176 (370)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 176 (370)
... ..+..+|||+|||.++++++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++.|
T Consensus 82 ~~~-----------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~l 149 (562)
T TIGR01628 82 SLR-----------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKV 149 (562)
T ss_pred ccc-----------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHh
Confidence 111 1223579999999999999999999999999999999885 8999999999999999999999999
Q ss_pred CCceeCCeeEEEEEeecCCC------------CcCCCCCCCCHHHHHHhcccCCceeeeeeeecc---ccCCC---CCCh
Q psy2983 177 NGFELAGRPMKVGTVTDRNE------------SVGGGPSNLDTDEMERAGVDLGATGRLQLMFKL---AEGTG---LELP 238 (370)
Q Consensus 177 ~g~~i~g~~l~V~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~---~~~~~---~~~~ 238 (370)
+|..+.|+.|.|.....+.. .+++++..++++++++.|..||.+.++.++.+. .+|++ |..+
T Consensus 150 ng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~ 229 (562)
T TIGR01628 150 NGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKH 229 (562)
T ss_pred cccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCH
Confidence 99999999999976543222 257889999999999999999999999998763 23444 5677
Q ss_pred HHHHHHHh-hhccccc----CCCCC----CCC---------------CCCCCCCCCceEEeecCCCCCCCCCchhhHHhH
Q psy2983 239 PAAASALN-LAQNAIL----NSSTP----QVS---------------SSTAPPIATQCFLLANMFDPATETNPTWDVEIR 294 (370)
Q Consensus 239 ~~a~~a~~-~~~~~~~----~p~~~----~~~---------------~~~~~~~ps~vl~L~Nm~~~~~l~~d~~~~ei~ 294 (370)
..|..|+. +.+.... ..... +.. ........+..|.+.|+ +.+++ .
T Consensus 230 e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl--~~~~~--------~ 299 (562)
T TIGR01628 230 EDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNL--DDTVT--------D 299 (562)
T ss_pred HHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCC--CCccC--------H
Confidence 77777765 2222211 00000 000 00011234566888888 22222 3
Q ss_pred HHHHHHHhhcCceeeEEEE
Q psy2983 295 DDVIEECNKHGVGASTVCF 313 (370)
Q Consensus 295 eDv~~Ec~kyG~~~~~~~~ 313 (370)
+|+++.|++||.+....++
T Consensus 300 ~~L~~~F~~~G~i~~~~i~ 318 (562)
T TIGR01628 300 EKLRELFSECGEITSAKVM 318 (562)
T ss_pred HHHHHHHHhcCCeEEEEEE
Confidence 6788999999998665543
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=4e-33 Score=268.03 Aligned_cols=219 Identities=26% Similarity=0.410 Sum_probs=191.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEeccc
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~ 93 (370)
+..+|||+|||.++++++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|.+|++ |+|..+.|++|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46789999999999999999999999999999999999999999999999999999999995 99999999999998875
Q ss_pred ccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHH
Q psy2983 94 AEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173 (370)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~ 173 (370)
.... .....+|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|..|+
T Consensus 82 ~~~~-------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai 148 (352)
T TIGR01661 82 PSSD-------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAI 148 (352)
T ss_pred cccc-------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHH
Confidence 4321 112357999999999999999999999999999999998878999999999999999999999
Q ss_pred HHhCCceeCC--eeEEEEEeecCC--------------------------------------------------------
Q psy2983 174 EQLNGFELAG--RPMKVGTVTDRN-------------------------------------------------------- 195 (370)
Q Consensus 174 ~~l~g~~i~g--~~l~V~~~~~~~-------------------------------------------------------- 195 (370)
+.|||..+.| ++|.|.++..+.
T Consensus 149 ~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (352)
T TIGR01661 149 KTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAH 228 (352)
T ss_pred HHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhh
Confidence 9999999876 677887764221
Q ss_pred -------------------------------------------CCcCCCCCCCCHHHHHHhcccCCceeeeeeeecc---
Q psy2983 196 -------------------------------------------ESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKL--- 229 (370)
Q Consensus 196 -------------------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~--- 229 (370)
..+++++..+++++|...|..||.+.++.++.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~ 308 (352)
T TIGR01661 229 QQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTN 308 (352)
T ss_pred hhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCC
Confidence 2245677889999999999999999999999774
Q ss_pred -ccCCC---CCChHHHHHHHh
Q psy2983 230 -AEGTG---LELPPAAASALN 246 (370)
Q Consensus 230 -~~~~~---~~~~~~a~~a~~ 246 (370)
++|+| |..+.+|..|+.
T Consensus 309 ~skG~aFV~F~~~~~A~~Ai~ 329 (352)
T TIGR01661 309 QCKGYGFVSMTNYDEAAMAIL 329 (352)
T ss_pred CccceEEEEECCHHHHHHHHH
Confidence 55666 567777777765
No 7
>KOG0124|consensus
Probab=100.00 E-value=3.6e-34 Score=258.33 Aligned_cols=178 Identities=26% Similarity=0.479 Sum_probs=155.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEeccccc
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAE 95 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~~~ 95 (370)
++||||.+.+.+.|+.|+..|.+||+|.+|.+.+|+.|+++||||||||+-+|.|..|++ +||..+.||.|+|.++..-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 689999999999999999999999999999999999999999999999999999999996 9999999999999876532
Q ss_pred ccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHH
Q psy2983 96 KNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175 (370)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 175 (370)
.... ...+.........++|||..+.++++++||+.+|+.||+|.+|.+-+++..+.++||+|++|.+..+...|+..
T Consensus 194 pQAQ--piID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 194 PQAQ--PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred cccc--hHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh
Confidence 1100 00000111122347899999999999999999999999999999999998899999999999999999999999
Q ss_pred hCCceeCCeeEEEEEeecCCC
Q psy2983 176 LNGFELAGRPMKVGTVTDRNE 196 (370)
Q Consensus 176 l~g~~i~g~~l~V~~~~~~~~ 196 (370)
||=+.++|+-|+|..+..+..
T Consensus 272 MNlFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred cchhhcccceEecccccCCCc
Confidence 999999999999998755433
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=9.9e-32 Score=254.49 Aligned_cols=172 Identities=24% Similarity=0.408 Sum_probs=156.0
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEe
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQ 90 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~ 90 (370)
.....++|||+|||.++|+++|+++|+.||+|.+|+|++|..+++++|||||+|.++++|.+|++ |++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999999999999999999999999999995 99999999999998
Q ss_pred cccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHH
Q psy2983 91 PTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAK 170 (370)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~ 170 (370)
++..... .....+|||+|||..+++++|+++|++||.|..++++.++.+|+++|||||+|.+.++|.
T Consensus 183 ~a~p~~~-------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~ 249 (346)
T TIGR01659 183 YARPGGE-------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQ 249 (346)
T ss_pred ccccccc-------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHH
Confidence 8754321 112357999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHhCCceeCC--eeEEEEEeecCCC
Q psy2983 171 KAQEQLNGFELAG--RPMKVGTVTDRNE 196 (370)
Q Consensus 171 ~A~~~l~g~~i~g--~~l~V~~~~~~~~ 196 (370)
+|++.||+..+.+ ++|+|.++.....
T Consensus 250 ~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 250 EAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred HHHHHhCCCccCCCceeEEEEECCcccc
Confidence 9999999998875 7899998876543
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.2e-28 Score=245.56 Aligned_cols=220 Identities=22% Similarity=0.310 Sum_probs=175.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh---ccCCccCCeeEEEec
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG---LNGQKLLGIPIIVQP 91 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~---l~g~~i~g~~l~v~~ 91 (370)
++|+|||+|||.++++++|+++|++||+|.++.++++ +|||||+|.+.++|.+|++ +++..+.|++|+|++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 5799999999999999999999999999999998853 6899999999999999996 588999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHH
Q psy2983 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKK 171 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~ 171 (370)
+.......... ............+|||+||++.+++++|+++|++||.|.+|.++++.. .|+|||+|.+.++|.+
T Consensus 75 s~~~~~~~~~~-~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~ 149 (481)
T TIGR01649 75 STSQEIKRDGN-SDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQH 149 (481)
T ss_pred cCCcccccCCC-CcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHH
Confidence 86543211110 000111122345799999999999999999999999999999987632 4789999999999999
Q ss_pred HHHHhCCceeCC--eeEEEEEeecCCC-----------------------------------------------------
Q psy2983 172 AQEQLNGFELAG--RPMKVGTVTDRNE----------------------------------------------------- 196 (370)
Q Consensus 172 A~~~l~g~~i~g--~~l~V~~~~~~~~----------------------------------------------------- 196 (370)
|++.|||..+.| ..|+|.+++....
T Consensus 150 A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 229 (481)
T TIGR01649 150 AKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHG 229 (481)
T ss_pred HHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCC
Confidence 999999999975 4777777542110
Q ss_pred -------------------------------------------------CcCCCCC-CCCHHHHHHhcccCCceeeeeee
Q psy2983 197 -------------------------------------------------SVGGGPS-NLDTDEMERAGVDLGATGRLQLM 226 (370)
Q Consensus 197 -------------------------------------------------~~~~~~~-~~~~~~l~~~~~~~g~~~~~~l~ 226 (370)
.+++++. .++++.|...|..||.+.++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~ 309 (481)
T TIGR01649 230 GPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFM 309 (481)
T ss_pred CCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 0123444 58899999999999999999998
Q ss_pred eccccCCC---CCChHHHHHHHh
Q psy2983 227 FKLAEGTG---LELPPAAASALN 246 (370)
Q Consensus 227 ~~~~~~~~---~~~~~~a~~a~~ 246 (370)
.. .++++ |..+.+|..|+.
T Consensus 310 ~~-~~g~afV~f~~~~~A~~Ai~ 331 (481)
T TIGR01649 310 KN-KKETALIEMADPYQAQLALT 331 (481)
T ss_pred eC-CCCEEEEEECCHHHHHHHHH
Confidence 76 34666 667888888875
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=8e-29 Score=252.16 Aligned_cols=222 Identities=25% Similarity=0.437 Sum_probs=190.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEeccc
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~ 93 (370)
..++|||+|||.++++++|+++|+.||.|.++++..+. +++++|||||+|.+.++|.+|++ ++|..+.|+.|.|....
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 45689999999999999999999999999999999875 57889999999999999999995 99999999999997655
Q ss_pred ccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHH
Q psy2983 94 AEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173 (370)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~ 173 (370)
....+. .......++|||+|||.++++++|+++|+.||.|.++.+..+. +|.++|||||+|.+.++|.+|+
T Consensus 166 ~~~~~~--------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av 236 (562)
T TIGR01628 166 KKHERE--------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAV 236 (562)
T ss_pred cccccc--------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHH
Confidence 433221 1112334679999999999999999999999999999999985 7999999999999999999999
Q ss_pred HHhCCceeC----CeeEEEEEeecCC-------------------------CCcCCCCCCCCHHHHHHhcccCCceeeee
Q psy2983 174 EQLNGFELA----GRPMKVGTVTDRN-------------------------ESVGGGPSNLDTDEMERAGVDLGATGRLQ 224 (370)
Q Consensus 174 ~~l~g~~i~----g~~l~V~~~~~~~-------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 224 (370)
+.|+|..+. |+.+.|.++..+. ..+++++..+++++|++.|..||.+.++.
T Consensus 237 ~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~ 316 (562)
T TIGR01628 237 EEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAK 316 (562)
T ss_pred HHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEE
Confidence 999999999 9999998764332 22668899999999999999999999999
Q ss_pred eeecc---ccCCC---CCChHHHHHHHh
Q psy2983 225 LMFKL---AEGTG---LELPPAAASALN 246 (370)
Q Consensus 225 l~~~~---~~~~~---~~~~~~a~~a~~ 246 (370)
++.+. +++++ |..++.|..|+.
T Consensus 317 i~~d~~g~~~g~gfV~f~~~~~A~~A~~ 344 (562)
T TIGR01628 317 VMLDEKGVSRGFGFVCFSNPEEANRAVT 344 (562)
T ss_pred EEECCCCCcCCeEEEEeCCHHHHHHHHH
Confidence 99873 34555 567777766654
No 11
>KOG0148|consensus
Probab=99.96 E-value=5.6e-29 Score=217.04 Aligned_cols=179 Identities=25% Similarity=0.456 Sum_probs=157.1
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
.+..-.|||+.|.+.++.++|++.|.+||+|.+.++++|..|+++|||+||.|.+.++|++|++ ++|+-|.+|.|+-.|
T Consensus 59 ~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 3445679999999999999999999999999999999999999999999999999999999995 999999999999999
Q ss_pred ccccccccCC---CCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHH
Q psy2983 92 TQAEKNRAGN---TLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADD 168 (370)
Q Consensus 92 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~ 168 (370)
+..+...... .....-......+++||+||++..+++++|++.|++||+|.+|++.++ +|||||.|.+.|+
T Consensus 139 ATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 139 ATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEA 212 (321)
T ss_pred cccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhh
Confidence 8755422211 111222334556789999999999999999999999999999999998 7899999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEEeecCCCC
Q psy2983 169 AKKAQEQLNGFELAGRPMKVGTVTDRNES 197 (370)
Q Consensus 169 a~~A~~~l~g~~i~g~~l~V~~~~~~~~~ 197 (370)
|..||..+||.++.|+.+++.|.+.....
T Consensus 213 AahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 213 AAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred HHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 99999999999999999999998765443
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=1.5e-28 Score=236.32 Aligned_cols=181 Identities=26% Similarity=0.478 Sum_probs=152.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCC--eeEEEec
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLG--IPIIVQP 91 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g--~~l~v~~ 91 (370)
..++|||+|||..+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|..|++ |+|..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999998889999999999999999999995 99999877 5677776
Q ss_pred ccccccccCCC--------------C------------------------------------------------CCC---
Q psy2983 92 TQAEKNRAGNT--------------L------------------------------------------------PNL--- 106 (370)
Q Consensus 92 ~~~~~~~~~~~--------------~------------------------------------------------~~~--- 106 (370)
+.......... . ...
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 54322000000 0 000
Q ss_pred --------------CCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHH
Q psy2983 107 --------------QPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172 (370)
Q Consensus 107 --------------~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A 172 (370)
.+.....+.+|||+|||+.+++++|+++|++||.|.++++++|+.+|.++|||||+|.+.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 000011234699999999999999999999999999999999998999999999999999999999
Q ss_pred HHHhCCceeCCeeEEEEEeecCC
Q psy2983 173 QEQLNGFELAGRPMKVGTVTDRN 195 (370)
Q Consensus 173 ~~~l~g~~i~g~~l~V~~~~~~~ 195 (370)
+..|||..+.|+.|+|.+...+.
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999999987654
No 13
>KOG0145|consensus
Probab=99.96 E-value=6.8e-28 Score=209.00 Aligned_cols=208 Identities=25% Similarity=0.428 Sum_probs=182.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecccc
Q psy2983 16 ARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQA 94 (370)
Q Consensus 16 ~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~~ 94 (370)
...|.|.-||..+|+++++.+|...|+|++++++||+.+|.+-||+||.|.+++||++|+. |+|..+..+.|+|.++++
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 3459999999999999999999999999999999999999999999999999999999995 999999999999999876
Q ss_pred cccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHH
Q psy2983 95 EKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174 (370)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~ 174 (370)
...... ...|||++||..+|..+|.++|++||.|..-+++.|.-+|.++|.+||.|....+|+.|+.
T Consensus 121 Ss~~Ik-------------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk 187 (360)
T KOG0145|consen 121 SSDSIK-------------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIK 187 (360)
T ss_pred Chhhhc-------------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHH
Confidence 543322 3469999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceeCC--eeEEEEEeecCCCC-------------------------------------------------------
Q psy2983 175 QLNGFELAG--RPMKVGTVTDRNES------------------------------------------------------- 197 (370)
Q Consensus 175 ~l~g~~i~g--~~l~V~~~~~~~~~------------------------------------------------------- 197 (370)
.|||+.=.| .+|.|+++..+...
T Consensus 188 ~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~ 267 (360)
T KOG0145|consen 188 GLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLA 267 (360)
T ss_pred hccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceee
Confidence 999987654 58899887533221
Q ss_pred ---------------cCCCCCCCCHHHHHHhcccCCceeeeeeeeccc----cCCCCC
Q psy2983 198 ---------------VGGGPSNLDTDEMERAGVDLGATGRLQLMFKLA----EGTGLE 236 (370)
Q Consensus 198 ---------------~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~----~~~~~~ 236 (370)
+-++.++.++.-|.+.|.+||.+.++++.+++. .|+||.
T Consensus 268 ~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFV 325 (360)
T KOG0145|consen 268 GVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 325 (360)
T ss_pred eeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEE
Confidence 113556778888999999999999999999854 467754
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=3e-27 Score=235.02 Aligned_cols=208 Identities=18% Similarity=0.298 Sum_probs=174.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccC-CeeEEEecc
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLL-GIPIIVQPT 92 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~-g~~l~v~~~ 92 (370)
..++|||+|||.+++|++|+++|++||.|.+++|++| .+++++|||||+|.+.++|.+|++ |++..+. |+.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4589999999999999999999999999999999999 789999999999999999999996 9998885 777766544
Q ss_pred cccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCc-eeeEEE-eecCCCCCcccEEEEEECCHHHHH
Q psy2983 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGK-IDNIQL-MVDPDTGRSKGYGFITFHSADDAK 170 (370)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~-i~~v~~-~~~~~~g~~~g~afV~f~~~~~a~ 170 (370)
. ..++|||+|||..+++++|.+.|++++. +..+.+ ..+.+.++++|||||+|.+.++|.
T Consensus 136 ~-------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa 196 (578)
T TIGR01648 136 V-------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAA 196 (578)
T ss_pred c-------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHH
Confidence 2 1368999999999999999999999863 434333 333346788999999999999999
Q ss_pred HHHHHhCC--ceeCCeeEEEEEeecCCC------------CcCCCCCCCCHHHHHHhcccC--CceeeeeeeeccccCCC
Q psy2983 171 KAQEQLNG--FELAGRPMKVGTVTDRNE------------SVGGGPSNLDTDEMERAGVDL--GATGRLQLMFKLAEGTG 234 (370)
Q Consensus 171 ~A~~~l~g--~~i~g~~l~V~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~--g~~~~~~l~~~~~~~~~ 234 (370)
.|+..|+. ..+.|+.|.|.++.+... .+++++..+++++|++.|..| |.+.++.+++ +++
T Consensus 197 ~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r----gfA 272 (578)
T TIGR01648 197 MARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR----DYA 272 (578)
T ss_pred HHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec----CeE
Confidence 99998864 467899999999865432 367899999999999999999 9998887654 355
Q ss_pred ---CCChHHHHHHHh
Q psy2983 235 ---LELPPAAASALN 246 (370)
Q Consensus 235 ---~~~~~~a~~a~~ 246 (370)
|..+++|..|+.
T Consensus 273 FVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 273 FVHFEDREDAVKAMD 287 (578)
T ss_pred EEEeCCHHHHHHHHH
Confidence 677788887775
No 15
>KOG0144|consensus
Probab=99.95 E-value=7.4e-28 Score=222.03 Aligned_cols=179 Identities=27% Similarity=0.491 Sum_probs=157.4
Q ss_pred CCCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCC-ccC
Q psy2983 6 SDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQ-KLL 83 (370)
Q Consensus 6 ~~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~-~i~ 83 (370)
.+..+..+.+.-++||+.+|..++|.||+++|++||.|.+|.+++|+.++.++|||||.|.+.++|.+|+. |+.+ .+.
T Consensus 24 ~~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlp 103 (510)
T KOG0144|consen 24 LDHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLP 103 (510)
T ss_pred CCCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccC
Confidence 34455566778899999999999999999999999999999999999999999999999999999999995 6555 454
Q ss_pred C--eeEEEecccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEE
Q psy2983 84 G--IPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFI 161 (370)
Q Consensus 84 g--~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV 161 (370)
| .+|.|+++..+..+. ...++||||-|+..+||.+++++|++||.|++|.|++|. .|.++|||||
T Consensus 104 G~~~pvqvk~Ad~E~er~------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV 170 (510)
T KOG0144|consen 104 GMHHPVQVKYADGERERI------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFV 170 (510)
T ss_pred CCCcceeecccchhhhcc------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEE
Confidence 4 588998888776554 223689999999999999999999999999999999996 8999999999
Q ss_pred EECCHHHHHHHHHHhCCce-eC--CeeEEEEEeecCCCC
Q psy2983 162 TFHSADDAKKAQEQLNGFE-LA--GRPMKVGTVTDRNES 197 (370)
Q Consensus 162 ~f~~~~~a~~A~~~l~g~~-i~--g~~l~V~~~~~~~~~ 197 (370)
.|.+.+.|..|++.|||.. +. ..+|.|+|+..++..
T Consensus 171 ~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 171 KFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred EEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 9999999999999999954 44 579999999876665
No 16
>KOG0120|consensus
Probab=99.95 E-value=1.3e-27 Score=230.01 Aligned_cols=253 Identities=25% Similarity=0.384 Sum_probs=198.7
Q ss_pred CCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcC-----------C-CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh
Q psy2983 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSV-----------G-KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM 75 (370)
Q Consensus 8 ~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~-----------G-~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al 75 (370)
-.++.++..+++||+++|+.++++....+|..- | .+..+.+ +..+++||++|.+.++|..|+
T Consensus 167 ~~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~------n~~~nfa~ie~~s~~~at~~~ 240 (500)
T KOG0120|consen 167 MDSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL------NLEKNFAFIEFRSISEATEAM 240 (500)
T ss_pred cCcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee------cccccceeEEecCCCchhhhh
Confidence 345678899999999999999999999999863 2 2566655 345789999999999999999
Q ss_pred hccCCccCCeeEEEecccccccccCCC----------CCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEE
Q psy2983 76 GLNGQKLLGIPIIVQPTQAEKNRAGNT----------LPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQ 145 (370)
Q Consensus 76 ~l~g~~i~g~~l~v~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~ 145 (370)
.+++..+.|+++++.....+....... ...........+++++|++||..+++.++++++..||++....
T Consensus 241 ~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~ 320 (500)
T KOG0120|consen 241 ALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFR 320 (500)
T ss_pred cccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhhe
Confidence 999999999999997765443322211 1122334455678999999999999999999999999999999
Q ss_pred EeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecCCCCcCCCCCCCCHHHHHHhcccCCceeeeee
Q psy2983 146 LMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQL 225 (370)
Q Consensus 146 ~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l 225 (370)
+..+..+|.++||||++|.++..+..|+..|||+.+++++|.|+.+............ ++.. +
T Consensus 321 lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~-~~~~---------------~- 383 (500)
T KOG0120|consen 321 LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN-ISQS---------------Q- 383 (500)
T ss_pred eecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC-cccc---------------c-
Confidence 9999999999999999999999999999999999999999999987654443210000 0000 0
Q ss_pred eeccccCCCCCChHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCceEEeecCCCCCCCCCchhhHHhHHHHHHHHhhcC
Q psy2983 226 MFKLAEGTGLELPPAAASALNLAQNAILNSSTPQVSSSTAPPIATQCFLLANMFDPATETNPTWDVEIRDDVIEECNKHG 305 (370)
Q Consensus 226 ~~~~~~~~~~~~~~~a~~a~~~~~~~~~~p~~~~~~~~~~~~~ps~vl~L~Nm~~~~~l~~d~~~~ei~eDv~~Ec~kyG 305 (370)
.+.++.. .......|++||+|+||++++||.+|++|+||+|||+.||.|||
T Consensus 384 ----------------------------~~~i~~~-~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g 434 (500)
T KOG0120|consen 384 ----------------------------VPGIPLL-MTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG 434 (500)
T ss_pred ----------------------------cccchhh-hcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC
Confidence 0000000 00124568999999999999999999999999999999999999
Q ss_pred ceeeEEE
Q psy2983 306 VGASTVC 312 (370)
Q Consensus 306 ~~~~~~~ 312 (370)
++.++..
T Consensus 435 ~v~~v~i 441 (500)
T KOG0120|consen 435 AVRSVEI 441 (500)
T ss_pred ceeEEec
Confidence 9766554
No 17
>KOG0117|consensus
Probab=99.94 E-value=2.9e-26 Score=212.49 Aligned_cols=196 Identities=18% Similarity=0.311 Sum_probs=174.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCcc-CCeeEEEec
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKL-LGIPIIVQP 91 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i-~g~~l~v~~ 91 (370)
...+.|||+.||.++.|++|.-+|++.|+|-+++|+.|+.+|.++|||||.|.+.++|++|++ ||+..| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 566889999999999999999999999999999999999999999999999999999999995 999988 589999887
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCc-eeeEEEeecCC-CCCcccEEEEEECCHHHH
Q psy2983 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGK-IDNIQLMVDPD-TGRSKGYGFITFHSADDA 169 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~-i~~v~~~~~~~-~g~~~g~afV~f~~~~~a 169 (370)
+.. +++|||||||...++++|.+.+++.++ |..|.+++.+. ..+++|||||+|.+...|
T Consensus 161 Sva-------------------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~A 221 (506)
T KOG0117|consen 161 SVA-------------------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAA 221 (506)
T ss_pred eee-------------------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhH
Confidence 654 378999999999999999999999874 66777776654 468999999999999999
Q ss_pred HHHHHHhCC--ceeCCeeEEEEEeecCCCC------------cCCCCCCCCHHHHHHhcccCCceeeeeeeec
Q psy2983 170 KKAQEQLNG--FELAGRPMKVGTVTDRNES------------VGGGPSNLDTDEMERAGVDLGATGRLQLMFK 228 (370)
Q Consensus 170 ~~A~~~l~g--~~i~g~~l~V~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~ 228 (370)
..|...|-. ..+.|+.+.|.|+.+.... +.+++..++++.|++.|..||.+.+++..++
T Consensus 222 a~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD 294 (506)
T KOG0117|consen 222 AMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD 294 (506)
T ss_pred HHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc
Confidence 999988754 4567999999999877654 6789999999999999999999998877654
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=3.6e-25 Score=220.59 Aligned_cols=221 Identities=22% Similarity=0.313 Sum_probs=172.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCC--eeEEEeccc
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLG--IPIIVQPTQ 93 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g--~~l~v~~~~ 93 (370)
.+|||+||+..+|+++|+++|+.||.|.+|.+.++.. +++|||+|.+.++|.+|++ |+|..|.| +.|+|.+++
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk 172 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAK 172 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEec
Confidence 4799999999999999999999999999999887542 4689999999999999996 99999965 477777665
Q ss_pred ccccc------cC-C-----C---------------CCC-----------------------------------------
Q psy2983 94 AEKNR------AG-N-----T---------------LPN----------------------------------------- 105 (370)
Q Consensus 94 ~~~~~------~~-~-----~---------------~~~----------------------------------------- 105 (370)
...-. .. + . .+.
T Consensus 173 ~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (481)
T TIGR01649 173 PTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYR 252 (481)
T ss_pred CCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCc
Confidence 31100 00 0 0 000
Q ss_pred ------C--------CCCCCCCCceEEEecCCC-CCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHH
Q psy2983 106 ------L--------QPRGTGGPMRLYIGSLHF-NITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAK 170 (370)
Q Consensus 106 ------~--------~~~~~~~~~~l~V~nlp~-~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~ 170 (370)
. .+....+..+|||+|||+ .+++++|+++|+.||.|.+|++++++ +|+|||+|.+.++|.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~ 327 (481)
T TIGR01649 253 PAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQ 327 (481)
T ss_pred ccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHH
Confidence 0 000012346899999998 69999999999999999999999874 799999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEEeecCC--------------------------------------------CCcCCCCCCCC
Q psy2983 171 KAQEQLNGFELAGRPMKVGTVTDRN--------------------------------------------ESVGGGPSNLD 206 (370)
Q Consensus 171 ~A~~~l~g~~i~g~~l~V~~~~~~~--------------------------------------------~~~~~~~~~~~ 206 (370)
.|+..|||..+.|++|+|.+++... ..+.+++..++
T Consensus 328 ~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~t 407 (481)
T TIGR01649 328 LALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVS 407 (481)
T ss_pred HHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCC
Confidence 9999999999999999999864210 01446778899
Q ss_pred HHHHHHhcccCCc--eeeeeeeecc--ccCCC---CCChHHHHHHHh
Q psy2983 207 TDEMERAGVDLGA--TGRLQLMFKL--AEGTG---LELPPAAASALN 246 (370)
Q Consensus 207 ~~~l~~~~~~~g~--~~~~~l~~~~--~~~~~---~~~~~~a~~a~~ 246 (370)
+++|+++|..+|. +..+.++... .+++| |...++|..|+.
T Consensus 408 ee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~ 454 (481)
T TIGR01649 408 EEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALI 454 (481)
T ss_pred HHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHH
Confidence 9999999999998 7777776443 12444 667777777766
No 19
>KOG0131|consensus
Probab=99.94 E-value=1.1e-26 Score=191.83 Aligned_cols=171 Identities=29% Similarity=0.504 Sum_probs=153.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
....||||+||+..++++-|+++|-+.|+|.++.+.+|+-+...+||||+||.+.|+|+-|++ ++...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 356799999999999999999999999999999999999999999999999999999999998 9999999999999887
Q ss_pred cccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceee-EEEeecCCCCCcccEEEEEECCHHHHHH
Q psy2983 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDN-IQLMVDPDTGRSKGYGFITFHSADDAKK 171 (370)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~-v~~~~~~~~g~~~g~afV~f~~~~~a~~ 171 (370)
..... ......+|||+||.+.+++..|.+.|+.||.+.. -++++++++|.++|+||+.|.+.+.+.+
T Consensus 87 s~~~~------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ 154 (203)
T KOG0131|consen 87 SAHQK------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDA 154 (203)
T ss_pred ccccc------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHH
Confidence 62211 1122368999999999999999999999998765 4788999999999999999999999999
Q ss_pred HHHHhCCceeCCeeEEEEEeecCCC
Q psy2983 172 AQEQLNGFELAGRPMKVGTVTDRNE 196 (370)
Q Consensus 172 A~~~l~g~~i~g~~l~V~~~~~~~~ 196 (370)
|+..++|+.+.++++.|.++..+..
T Consensus 155 ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 155 AIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred HHHHhccchhcCCceEEEEEEecCC
Confidence 9999999999999999999866544
No 20
>KOG0123|consensus
Probab=99.93 E-value=3.2e-24 Score=204.39 Aligned_cols=202 Identities=29% Similarity=0.450 Sum_probs=176.3
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecccccc
Q psy2983 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEK 96 (370)
Q Consensus 18 ~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~~~~ 96 (370)
.|||| +++|+..|.++|+++|+|.++++.+|. | +-|||||.|.++++|.+|++ ++...++|+++++-|+....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58999 999999999999999999999999998 6 89999999999999999995 99999999999999987542
Q ss_pred cccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHh
Q psy2983 97 NRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176 (370)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 176 (370)
. .+||.||+++++...|.++|+.||.|.+|++..+. .| ++|| ||+|.++++|.+|+..+
T Consensus 77 ~------------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ 135 (369)
T KOG0123|consen 77 S------------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKL 135 (369)
T ss_pred c------------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHh
Confidence 1 29999999999999999999999999999999995 56 9999 99999999999999999
Q ss_pred CCceeCCeeEEEEEeecCCCC---------------cCCCCCCCCHHHHHHhcccCCceeeeeeeecc---ccCCCC---
Q psy2983 177 NGFELAGRPMKVGTVTDRNES---------------VGGGPSNLDTDEMERAGVDLGATGRLQLMFKL---AEGTGL--- 235 (370)
Q Consensus 177 ~g~~i~g~~l~V~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~---~~~~~~--- 235 (370)
||..+.|+.|.|.....+... +.+.+...+++.+...|..+|.+.+..+|.+. +++++|
T Consensus 136 ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f 215 (369)
T KOG0123|consen 136 NGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNF 215 (369)
T ss_pred cCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceee
Confidence 999999999999876554332 33455677888999999999999999999873 345653
Q ss_pred CChHHHHHHHh
Q psy2983 236 ELPPAAASALN 246 (370)
Q Consensus 236 ~~~~~a~~a~~ 246 (370)
..+..+..++.
T Consensus 216 ~~~e~a~~av~ 226 (369)
T KOG0123|consen 216 ENPEDAKKAVE 226 (369)
T ss_pred cChhHHHHHHH
Confidence 44566655554
No 21
>KOG0127|consensus
Probab=99.93 E-value=1.8e-24 Score=204.76 Aligned_cols=233 Identities=25% Similarity=0.390 Sum_probs=188.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecccc
Q psy2983 16 ARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQA 94 (370)
Q Consensus 16 ~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~~ 94 (370)
..||||++||+.++.++|.++|+.+|+|..+.++.+..++.++||+||.|.-.|++++|++ ..+..|+|+.|.|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 3799999999999999999999999999999999999999999999999999999999995 899999999999977654
Q ss_pred cccccC--CCCC--------CCC---CCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEE
Q psy2983 95 EKNRAG--NTLP--------NLQ---PRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFI 161 (370)
Q Consensus 95 ~~~~~~--~~~~--------~~~---~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV 161 (370)
...... .... +.. .....+.-+|.|+|||+.+...+|+.+|+.||.|..|.|++..+ |+-.|||||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV 163 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFV 163 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEE
Confidence 322110 0000 000 00111245899999999999999999999999999999998764 555599999
Q ss_pred EECCHHHHHHHHHHhCCceeCCeeEEEEEeecCCCC--------------------------------------------
Q psy2983 162 TFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNES-------------------------------------------- 197 (370)
Q Consensus 162 ~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~~~~-------------------------------------------- 197 (370)
.|....+|..|++.+|+..|.||+|-|.|+.++...
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeE 243 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEE 243 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccc
Confidence 999999999999999999999999999998543322
Q ss_pred -----------------------------------------------------cCCCCCCCCHHHHHHhcccCCceeeee
Q psy2983 198 -----------------------------------------------------VGGGPSNLDTDEMERAGVDLGATGRLQ 224 (370)
Q Consensus 198 -----------------------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~~~ 224 (370)
+.+++-..+++.+...|..||.+..+.
T Consensus 244 e~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~ 323 (678)
T KOG0127|consen 244 ETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAI 323 (678)
T ss_pred cccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEE
Confidence 123555677889999999999999888
Q ss_pred eeecc----ccCCC---CCChHHHHHHHhhhc
Q psy2983 225 LMFKL----AEGTG---LELPPAAASALNLAQ 249 (370)
Q Consensus 225 l~~~~----~~~~~---~~~~~~a~~a~~~~~ 249 (370)
+.... +.|.+ |-++.+++..+.++.
T Consensus 324 iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 324 IVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred EEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 87663 33444 567777777776553
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=2.8e-24 Score=216.51 Aligned_cols=180 Identities=21% Similarity=0.286 Sum_probs=147.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
...++|||+|||..+++++|+++|+.||.|..+.++++..+|.++|||||+|.+.++|..|++ |+|..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999999999999999999999999999995 9999999999999887
Q ss_pred cccccccCCCCC----------C-----CCCCCCCCCceEEEecCCCC--C--------CHHHHHhcccCCCceeeEEEe
Q psy2983 93 QAEKNRAGNTLP----------N-----LQPRGTGGPMRLYIGSLHFN--I--------TEDMLRGIFEPFGKIDNIQLM 147 (370)
Q Consensus 93 ~~~~~~~~~~~~----------~-----~~~~~~~~~~~l~V~nlp~~--~--------t~e~l~~~f~~~G~i~~v~~~ 147 (370)
............ . .......+..+|+|.|+... + ..++|+++|++||.|..|.|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 543221110000 0 00111234578999999642 1 236899999999999999998
Q ss_pred ecC---CCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 148 VDP---DTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 148 ~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
++. .++.+.|+|||+|.+.++|.+|+..|||..|.|+.|.|.+...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 652 3456789999999999999999999999999999999998543
No 23
>KOG0148|consensus
Probab=99.92 E-value=1.4e-24 Score=189.65 Aligned_cols=191 Identities=26% Similarity=0.448 Sum_probs=157.6
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEecc
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~ 92 (370)
+.+.|||||+||+..+||+-|..+|++.|+|.+++++.| .++|.++
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa 48 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWA 48 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhccccc
Confidence 456799999999999999999999999999999999876 3445444
Q ss_pred cccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHH
Q psy2983 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172 (370)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A 172 (370)
....+... ........+||+.|...++-++|++.|.+||+|..+++++|..|+++|||+||.|.+.++|+.|
T Consensus 49 ~~p~nQsk--------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnA 120 (321)
T KOG0148|consen 49 TAPGNQSK--------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENA 120 (321)
T ss_pred cCcccCCC--------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHH
Confidence 43311111 1122246799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeCCeeEEEEEeecCCCC-----------------------cCCCCCCCCHHHHHHhcccCCceeeeeeeecc
Q psy2983 173 QEQLNGFELAGRPMKVGTVTDRNES-----------------------VGGGPSNLDTDEMERAGVDLGATGRLQLMFKL 229 (370)
Q Consensus 173 ~~~l~g~~i~g~~l~V~~~~~~~~~-----------------------~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~ 229 (370)
|..|||+-|++|.|+-.|+..+... .+++++.++++.+++.|+.||.|..+.+.++.
T Consensus 121 I~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q 200 (321)
T KOG0148|consen 121 IQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ 200 (321)
T ss_pred HHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc
Confidence 9999999999999999998655432 45677889999999999999999999887763
Q ss_pred ccCC-CCCChHHHHHHH
Q psy2983 230 AEGT-GLELPPAAASAL 245 (370)
Q Consensus 230 ~~~~-~~~~~~~a~~a~ 245 (370)
.-.| -|...++|+.|+
T Consensus 201 GYaFVrF~tkEaAahAI 217 (321)
T KOG0148|consen 201 GYAFVRFETKEAAAHAI 217 (321)
T ss_pred ceEEEEecchhhHHHHH
Confidence 3332 266777666553
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=5.4e-23 Score=204.67 Aligned_cols=166 Identities=25% Similarity=0.436 Sum_probs=136.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEe-eeCCCCCeecEEEEEecCCCChHHHhh-cc--CCccCCeeEEE
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGK-VRDVRLI-TCNKTRRFKGIAYIEFKDPESVPLAMG-LN--GQKLLGIPIIV 89 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~-v~~v~i~-~d~~~~~~kg~afVeF~~~e~A~~Al~-l~--g~~i~g~~l~v 89 (370)
+.++|||+|||.++++++|.+.|++++. +.++.+. .....++++|||||+|.+.++|..|+. ++ ...+.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4689999999999999999999999864 4444333 333456789999999999999999995 43 34688999999
Q ss_pred ecccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCC--CceeeEEEeecCCCCCcccEEEEEECCHH
Q psy2983 90 QPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPF--GKIDNIQLMVDPDTGRSKGYGFITFHSAD 167 (370)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~--G~i~~v~~~~~~~~g~~~g~afV~f~~~~ 167 (370)
.++.+..... .......++|||+|||.++++++|+++|++| |.|.+|.++ ++||||+|.+.+
T Consensus 217 dwA~p~~~~d--------~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e 280 (578)
T TIGR01648 217 DWAEPEEEVD--------EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDRE 280 (578)
T ss_pred Eeeccccccc--------ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHH
Confidence 9886543211 1112234689999999999999999999999 999999876 459999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEEeecCCC
Q psy2983 168 DAKKAQEQLNGFELAGRPMKVGTVTDRNE 196 (370)
Q Consensus 168 ~a~~A~~~l~g~~i~g~~l~V~~~~~~~~ 196 (370)
+|.+|++.|||..|.|+.|+|.++++...
T Consensus 281 ~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 281 DAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 99999999999999999999999976543
No 25
>KOG0145|consensus
Probab=99.90 E-value=8.1e-23 Score=177.55 Aligned_cols=179 Identities=28% Similarity=0.532 Sum_probs=151.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCe--eEEEec
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGI--PIIVQP 91 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~--~l~v~~ 91 (370)
..-.|||.+||..+|..||+++|++||.|..-+|+.|.-+|.++|.+||.|...++|+.|+. |+|..-.|. +|.|++
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 34569999999999999999999999999888999999999999999999999999999996 999987664 788876
Q ss_pred ccccccccCCC----------------C-------------------CC---------------CCCCCCCCCceEEEec
Q psy2983 92 TQAEKNRAGNT----------------L-------------------PN---------------LQPRGTGGPMRLYIGS 121 (370)
Q Consensus 92 ~~~~~~~~~~~----------------~-------------------~~---------------~~~~~~~~~~~l~V~n 121 (370)
+.......... . .. ..+......-+|||.|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 65322111100 0 00 0011222346899999
Q ss_pred CCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 122 lp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
|.++.+|.-|.++|.+||.|..+++++|..+.++||||||.+.+-++|..|+..|||..++++.|.|.+...
T Consensus 286 Lspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred cCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 999999999999999999999999999998999999999999999999999999999999999999998654
No 26
>KOG0123|consensus
Probab=99.90 E-value=1.2e-22 Score=193.64 Aligned_cols=225 Identities=27% Similarity=0.463 Sum_probs=190.3
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
.|+...|||.||++.++.++|.++|+.||.|.++++..+... ++|| ||+|.+.++|.+|++ +||..+.|++|.|..
T Consensus 73 ~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~ 149 (369)
T KOG0123|consen 73 QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGL 149 (369)
T ss_pred ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEee
Confidence 345555999999999999999999999999999999998764 8999 999999999999996 999999999999988
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHH
Q psy2983 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKK 171 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~ 171 (370)
...+..+...... ....-..+++.+++.+.+++.|..+|..+|.|..+.++.+. .|+++||+||+|.+.+.|..
T Consensus 150 ~~~~~er~~~~~~-----~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~ 223 (369)
T KOG0123|consen 150 FERKEEREAPLGE-----YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKK 223 (369)
T ss_pred ccchhhhcccccc-----hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHH
Confidence 7765554432221 11223568999999999999999999999999999999995 78899999999999999999
Q ss_pred HHHHhCCceeCCeeEEEEEeecCCCC-------------------------cCCCCCCCCHHHHHHhcccCCceeeeeee
Q psy2983 172 AQEQLNGFELAGRPMKVGTVTDRNES-------------------------VGGGPSNLDTDEMERAGVDLGATGRLQLM 226 (370)
Q Consensus 172 A~~~l~g~~i~g~~l~V~~~~~~~~~-------------------------~~~~~~~~~~~~l~~~~~~~g~~~~~~l~ 226 (370)
|+..|++..+.+..+.|..+..+... +.+++..++.+.++..|..+|.+.+..+|
T Consensus 224 av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~ 303 (369)
T KOG0123|consen 224 AVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVM 303 (369)
T ss_pred HHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEE
Confidence 99999999999999999887542111 44567788999999999999999999998
Q ss_pred ec---cccCCC---CCChHHHHHHHh
Q psy2983 227 FK---LAEGTG---LELPPAAASALN 246 (370)
Q Consensus 227 ~~---~~~~~~---~~~~~~a~~a~~ 246 (370)
.. .+.|+| |+.++.|..|+.
T Consensus 304 ~~~~g~skG~gfV~fs~~eeA~~A~~ 329 (369)
T KOG0123|consen 304 VDENGKSKGFGFVEFSSPEEAKKAMT 329 (369)
T ss_pred eccCCCccceEEEEcCCHHHHHHHHH
Confidence 86 344555 678888877755
No 27
>KOG0109|consensus
Probab=99.90 E-value=3.1e-23 Score=182.90 Aligned_cols=149 Identities=26% Similarity=0.479 Sum_probs=137.5
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecccccc
Q psy2983 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEK 96 (370)
Q Consensus 18 ~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~~~~ 96 (370)
+|||||||.++++.+|+.+|++||+|.++.|++ .||||+.++...|+.|+. |+|..|+|..|.|+.++.+.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 589999999999999999999999999999985 599999999999999997 99999999999999887552
Q ss_pred cccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHh
Q psy2983 97 NRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176 (370)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 176 (370)
....+|+|+|+.+.++.++++..|++||+|.++++.+| |+||.|...++|..|+..|
T Consensus 76 ---------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l 132 (346)
T KOG0109|consen 76 ---------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGL 132 (346)
T ss_pred ---------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcc
Confidence 22368999999999999999999999999999999855 9999999999999999999
Q ss_pred CCceeCCeeEEEEEeecCCCC
Q psy2983 177 NGFELAGRPMKVGTVTDRNES 197 (370)
Q Consensus 177 ~g~~i~g~~l~V~~~~~~~~~ 197 (370)
+|.+|.|++++|+.+..+-..
T Consensus 133 ~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 133 DNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred cccccccceeeeeeecccccc
Confidence 999999999999998776554
No 28
>KOG0117|consensus
Probab=99.89 E-value=1.4e-22 Score=188.20 Aligned_cols=168 Identities=25% Similarity=0.424 Sum_probs=143.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEeeeCC-CCCeecEEEEEecCCCChHHHhh--ccC-CccCCeeEE
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGK-VRDVRLITCNK-TRRFKGIAYIEFKDPESVPLAMG--LNG-QKLLGIPII 88 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~-v~~v~i~~d~~-~~~~kg~afVeF~~~e~A~~Al~--l~g-~~i~g~~l~ 88 (370)
.+.++|||+|+|.+.++++|.+-+++.++ |.+|.+..++. ..+.+|||||+|.+...|..|-. ++| ..+.|+.+.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 46789999999999999999999999887 77777765543 35789999999999999999985 444 478999999
Q ss_pred EecccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHH
Q psy2983 89 VQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADD 168 (370)
Q Consensus 89 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~ 168 (370)
|.|+.++...... ....-..|||+||+.++|+|.|+++|++||.|++|+.++| ||||.|.+.++
T Consensus 242 VdWAep~~e~ded--------~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~d 305 (506)
T KOG0117|consen 242 VDWAEPEEEPDED--------TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAERED 305 (506)
T ss_pred eeccCcccCCChh--------hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHH
Confidence 9999876433221 1223357999999999999999999999999999998866 99999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEEeecCCCC
Q psy2983 169 AKKAQEQLNGFELAGRPMKVGTVTDRNES 197 (370)
Q Consensus 169 a~~A~~~l~g~~i~g~~l~V~~~~~~~~~ 197 (370)
|.+|++.+||++|.|..|.|..+++....
T Consensus 306 avkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 306 AVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred HHHHHHHhcCceecCceEEEEecCChhhh
Confidence 99999999999999999999999876543
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.89 E-value=8.7e-22 Score=195.87 Aligned_cols=175 Identities=26% Similarity=0.376 Sum_probs=142.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEeccc
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~ 93 (370)
..++|||+|||..+++++|+++|+.||.|..|.++++..+|+++|||||+|.+.++|..|++ |+|..+.|++|.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 47899999999999999999999999999999999999999999999999999999999995 99999999999999854
Q ss_pred ccccccCC--------------------------------C------CC-------------------------------
Q psy2983 94 AEKNRAGN--------------------------------T------LP------------------------------- 104 (370)
Q Consensus 94 ~~~~~~~~--------------------------------~------~~------------------------------- 104 (370)
........ . .+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
T TIGR01622 265 DSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGAL 344 (457)
T ss_pred CCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccc
Confidence 21100000 0 00
Q ss_pred ------CCCCC--CCCCCceEEEecCCCCCC----------HHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCH
Q psy2983 105 ------NLQPR--GTGGPMRLYIGSLHFNIT----------EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSA 166 (370)
Q Consensus 105 ------~~~~~--~~~~~~~l~V~nlp~~~t----------~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~ 166 (370)
...+. ......+|+|.|+....+ .++|++.|++||.|..+.+. .+...|++||+|.+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~----~~~~~G~~fV~F~~~ 420 (457)
T TIGR01622 345 AIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVD----TKNSAGKIYLKFSSV 420 (457)
T ss_pred ccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEe----CCCCceeEEEEECCH
Confidence 00000 112346789999954443 36899999999999999886 344579999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 167 DDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 167 ~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
++|.+|++.|||..|+|+.|.+.+...
T Consensus 421 e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 421 DAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 999999999999999999999998643
No 30
>KOG0127|consensus
Probab=99.88 E-value=4.7e-22 Score=188.53 Aligned_cols=180 Identities=26% Similarity=0.436 Sum_probs=148.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecccc
Q psy2983 16 ARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQA 94 (370)
Q Consensus 16 ~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~~ 94 (370)
.-+|.|+|||..+...+|+.+|+.||.|..|.|.+...++.. |||||.|....+|..|++ ++|..|.||+|-|.|+-.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 568999999999999999999999999999999976665555 999999999999999997 999999999999987642
Q ss_pred cccccCCC---------------------------------------C--C--------------------CCC------
Q psy2983 95 EKNRAGNT---------------------------------------L--P--------------------NLQ------ 107 (370)
Q Consensus 95 ~~~~~~~~---------------------------------------~--~--------------------~~~------ 107 (370)
...-.... . . +..
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 11000000 0 0 000
Q ss_pred ----------CCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHh-
Q psy2983 108 ----------PRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL- 176 (370)
Q Consensus 108 ----------~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l- 176 (370)
.....-..+|||+|||+++|+++|.+.|++||.|..+.++.++.||.++|.|||.|.+...|+.||.+.
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 000011258999999999999999999999999999999999999999999999999999999999976
Q ss_pred ----CC-ceeCCeeEEEEEeecCCC
Q psy2983 177 ----NG-FELAGRPMKVGTVTDRNE 196 (370)
Q Consensus 177 ----~g-~~i~g~~l~V~~~~~~~~ 196 (370)
.| ..+.||.|+|..+..+..
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchHH
Confidence 34 678899999999876554
No 31
>KOG0110|consensus
Probab=99.84 E-value=5.4e-21 Score=186.82 Aligned_cols=173 Identities=23% Similarity=0.429 Sum_probs=146.4
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCC---CCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEeccc
Q psy2983 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKT---RRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 18 ~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~---~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~ 93 (370)
+|||.||+...|.++|...|...|.|.++.|..-+.. ..|.|||||+|.++++|+.|+. |+|..+.|+.|.++.+.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 3999999999999999999999999999988653321 2467999999999999999996 99999999999999887
Q ss_pred ccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHH
Q psy2983 94 AEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173 (370)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~ 173 (370)
.... .......+ ......+|+|.|||+..+..+++++|..||.+.++++++....+.++|||||+|-++.+|.+|+
T Consensus 597 ~k~~---~~~gK~~~-~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~ 672 (725)
T KOG0110|consen 597 NKPA---STVGKKKS-KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAF 672 (725)
T ss_pred Cccc---cccccccc-cccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHH
Confidence 2211 11111111 1122578999999999999999999999999999999987667788999999999999999999
Q ss_pred HHhCCceeCCeeEEEEEeecC
Q psy2983 174 EQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 174 ~~l~g~~i~g~~l~V~~~~~~ 194 (370)
.+|.+..++||.|.+.|+...
T Consensus 673 ~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 673 DALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred Hhhcccceechhhheehhccc
Confidence 999999999999999998664
No 32
>KOG4205|consensus
Probab=99.84 E-value=1.7e-20 Score=173.00 Aligned_cols=175 Identities=25% Similarity=0.452 Sum_probs=155.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEecccc
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQA 94 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~~~ 94 (370)
+..++||++|+..++++.|+++|.+||+|.++.+++|+.+++++||+||+|.+++.+..++......|.|+.|.+.++.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 78999999999999999999999999999999999999999999999999999999999998888889999998877654
Q ss_pred cccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHH
Q psy2983 95 EKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174 (370)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~ 174 (370)
...... ........++||++||.+++++++++.|++||.|..+.++.|..+..++||+||.|.+++++.+++.
T Consensus 85 r~~~~~-------~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~ 157 (311)
T KOG4205|consen 85 REDQTK-------VGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL 157 (311)
T ss_pred cccccc-------cccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc
Confidence 432221 1111145689999999999999999999999999999999999999999999999999999999988
Q ss_pred HhCCceeCCeeEEEEEeecCCCC
Q psy2983 175 QLNGFELAGRPMKVGTVTDRNES 197 (370)
Q Consensus 175 ~l~g~~i~g~~l~V~~~~~~~~~ 197 (370)
.+-+.|.++.+.|+.+.++...
T Consensus 158 -~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 158 -QKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred -cceeeecCceeeEeeccchhhc
Confidence 7889999999999999776554
No 33
>KOG0146|consensus
Probab=99.80 E-value=1.5e-19 Score=157.87 Aligned_cols=180 Identities=25% Similarity=0.467 Sum_probs=146.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCc-cCC--eeEEEe
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQK-LLG--IPIIVQ 90 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~-i~g--~~l~v~ 90 (370)
+.|+||||-|...-+|+|++.+|..||.|.++.+.+... |.+||+|||.|.+.-+|..|+. |+|.. +-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 679999999999999999999999999999999988764 8899999999999999999995 88874 333 245554
Q ss_pred cccccccccCCC--------------------------------------------------------------------
Q psy2983 91 PTQAEKNRAGNT-------------------------------------------------------------------- 102 (370)
Q Consensus 91 ~~~~~~~~~~~~-------------------------------------------------------------------- 102 (370)
+...++++....
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 433322211100
Q ss_pred ----------CCC-------------------------------------------------------------------
Q psy2983 103 ----------LPN------------------------------------------------------------------- 105 (370)
Q Consensus 103 ----------~~~------------------------------------------------------------------- 105 (370)
.+.
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 000
Q ss_pred --------------------CCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECC
Q psy2983 106 --------------------LQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHS 165 (370)
Q Consensus 106 --------------------~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~ 165 (370)
...+.....+.|||.+||.+..+.+|.+.|-+||.|.+.+++.|+-|+.+|.|+||.|.+
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 000122233679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEEeecCC
Q psy2983 166 ADDAKKAQEQLNGFELAGRPMKVGTVTDRN 195 (370)
Q Consensus 166 ~~~a~~A~~~l~g~~i~g~~l~V~~~~~~~ 195 (370)
+.+|+.||.+|||+.|+=++|+|....++.
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 999999999999999999999998766554
No 34
>KOG0144|consensus
Probab=99.79 E-value=2.5e-19 Score=165.87 Aligned_cols=182 Identities=26% Similarity=0.477 Sum_probs=150.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCC-ccCC--eeEEE
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQ-KLLG--IPIIV 89 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~-~i~g--~~l~v 89 (370)
-+.|+|||+-|+..+||.+++++|.+||.|+++.|++|.. +.+||||||.|.+.|.|..|++ +||. .+.| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 3479999999999999999999999999999999999875 8899999999999999999996 8887 4555 48888
Q ss_pred ecccccccccCCCC------------------------------------------------------------------
Q psy2983 90 QPTQAEKNRAGNTL------------------------------------------------------------------ 103 (370)
Q Consensus 90 ~~~~~~~~~~~~~~------------------------------------------------------------------ 103 (370)
+++..++.+.....
T Consensus 201 kFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~ 280 (510)
T KOG0144|consen 201 KFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAAL 280 (510)
T ss_pred EecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHh
Confidence 66654332221000
Q ss_pred -------------CCC------------------------C---------------------------------------
Q psy2983 104 -------------PNL------------------------Q--------------------------------------- 107 (370)
Q Consensus 104 -------------~~~------------------------~--------------------------------------- 107 (370)
... .
T Consensus 281 ~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~ 360 (510)
T KOG0144|consen 281 AAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPV 360 (510)
T ss_pred hhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcc
Confidence 000 0
Q ss_pred ---------------------------------------------------------CCCCCCCceEEEecCCCCCCHHH
Q psy2983 108 ---------------------------------------------------------PRGTGGPMRLYIGSLHFNITEDM 130 (370)
Q Consensus 108 ---------------------------------------------------------~~~~~~~~~l~V~nlp~~~t~e~ 130 (370)
.........|||.+||.+.-+.+
T Consensus 361 aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~ 440 (510)
T KOG0144|consen 361 AASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQD 440 (510)
T ss_pred cccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHH
Confidence 00001113499999999999999
Q ss_pred HHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecCCC
Q psy2983 131 LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196 (370)
Q Consensus 131 l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~~~ 196 (370)
|-..|.+||.|.+.++..|+.+|.++.|+||.|++..+|..||..|||..++.++++|....++..
T Consensus 441 l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 441 LIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred HHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 999999999999999999999999999999999999999999999999999999999998776554
No 35
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=5.2e-18 Score=161.00 Aligned_cols=136 Identities=24% Similarity=0.371 Sum_probs=119.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||+++++++|+++|+.||.|.+|++++|..+++++|||||+|.++++|.+|++.|++..+.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eecC-------CCCcCCCCCCCCHHHHHHhcccCCceeeeeeeeccc----cCCC---CCChHHHHHHHh
Q psy2983 191 VTDR-------NESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLA----EGTG---LELPPAAASALN 246 (370)
Q Consensus 191 ~~~~-------~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~----~~~~---~~~~~~a~~a~~ 246 (370)
+.+. ...+.+++..+++++|++.|..+|.+..+.++.+.. ++++ |...+.|..|+.
T Consensus 184 a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 184 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred ccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 7543 234778999999999999999999999999887632 2444 667788877766
No 36
>KOG4206|consensus
Probab=99.77 E-value=1.1e-17 Score=144.06 Aligned_cols=173 Identities=23% Similarity=0.445 Sum_probs=142.2
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHH----HhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCee
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEE----FFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIP 86 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~----~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~ 86 (370)
...+..||||.||+..+..++|+. +|++||.|.+|...+ +.+.+|.|||.|.+.+.|..|+. |+|..+.|++
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 344556999999999999999988 999999999987764 46789999999999999999995 9999999999
Q ss_pred EEEecccccccccCCCC-------------------C-----------------C-CCCCCCCCCceEEEecCCCCCCHH
Q psy2983 87 IIVQPTQAEKNRAGNTL-------------------P-----------------N-LQPRGTGGPMRLYIGSLHFNITED 129 (370)
Q Consensus 87 l~v~~~~~~~~~~~~~~-------------------~-----------------~-~~~~~~~~~~~l~V~nlp~~~t~e 129 (370)
++|+++........... + . .......+...+++.|||..++.+
T Consensus 82 mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e 161 (221)
T KOG4206|consen 82 MRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESE 161 (221)
T ss_pred hheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHH
Confidence 99998875433222100 0 0 001113345689999999999999
Q ss_pred HHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeC-CeeEEEEEee
Q psy2983 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA-GRPMKVGTVT 192 (370)
Q Consensus 130 ~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~-g~~l~V~~~~ 192 (370)
.+..+|++|...+.++++... .+.|||+|.+...|..|...|.|..+. ...++|.++.
T Consensus 162 ~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 162 MLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999988654 779999999999999999999999887 8888887753
No 37
>KOG0110|consensus
Probab=99.75 E-value=2.1e-17 Score=161.86 Aligned_cols=231 Identities=21% Similarity=0.323 Sum_probs=176.6
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPII 88 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~ 88 (370)
++..+..+.++|+|||..+..++|...|..||+|..+.+.+ .|. -|+|+|.++.+|..|+. +....+...+++
T Consensus 379 ~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~---~G~---~aiv~fl~p~eAr~Afrklaysr~k~~ply 452 (725)
T KOG0110|consen 379 SQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP---GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLY 452 (725)
T ss_pred hhhhhhcceeeeccCccccccHHHHHHhhcccccceeecCc---ccc---eeeeeecCccchHHHHHHhchhhhccCccc
Confidence 44678889999999999999999999999999999995542 222 39999999999999996 888888888888
Q ss_pred EecccccccccC---------CCCC------------------CCC----C------CCCCCCceEEEecCCCCCCHHHH
Q psy2983 89 VQPTQAEKNRAG---------NTLP------------------NLQ----P------RGTGGPMRLYIGSLHFNITEDML 131 (370)
Q Consensus 89 v~~~~~~~~~~~---------~~~~------------------~~~----~------~~~~~~~~l~V~nlp~~~t~e~l 131 (370)
+.|.....-... .... +.. . .......+|||.||+++.+.+++
T Consensus 453 le~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l 532 (725)
T KOG0110|consen 453 LEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDL 532 (725)
T ss_pred cccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHH
Confidence 766543211100 0000 000 0 00111234999999999999999
Q ss_pred HhcccCCCceeeEEEeecCCCC---CcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecCC-------------
Q psy2983 132 RGIFEPFGKIDNIQLMVDPDTG---RSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRN------------- 195 (370)
Q Consensus 132 ~~~f~~~G~i~~v~~~~~~~~g---~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~~------------- 195 (370)
..+|...|.|.++.|.+.++.. .+.|||||+|.++++|+.|+..|+|..++|+.|.|+++....
T Consensus 533 ~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~ 612 (725)
T KOG0110|consen 533 EDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKK 612 (725)
T ss_pred HHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccc
Confidence 9999999999999887665321 355999999999999999999999999999999999886111
Q ss_pred ---CCcCCCCCCCCHHHHHHhcccCCceeeeeeeecc----ccCCC---CCChHHHHHHHh
Q psy2983 196 ---ESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKL----AEGTG---LELPPAAASALN 246 (370)
Q Consensus 196 ---~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~----~~~~~---~~~~~~a~~a~~ 246 (370)
..+.++|-..+..+++..|..||.+.++.+..+. .+||+ |..|..+..|+.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~ 673 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFD 673 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHH
Confidence 1145677778888999999999999999998873 35566 456666666654
No 38
>KOG1548|consensus
Probab=99.75 E-value=2.3e-17 Score=149.30 Aligned_cols=164 Identities=21% Similarity=0.334 Sum_probs=120.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceee--------EEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeC
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDN--------IQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA 182 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~--------v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~ 182 (370)
...+..|||+|||.++|.+++.++|+++|.|.. |+++++. .|..+|-|+|.|...+++..|++.|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 334567999999999999999999999998763 8999995 6999999999999999999999999999999
Q ss_pred CeeEEEEEeecCCCCcCCCCCC-----CCHHHHHHhcccCCceeeeeeeeccccCCCCCChHHHHHHHhhhcccccCCCC
Q psy2983 183 GRPMKVGTVTDRNESVGGGPSN-----LDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPPAAASALNLAQNAILNSST 257 (370)
Q Consensus 183 g~~l~V~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~a~~a~~~~~~~~~~p~~ 257 (370)
|+.|+|..|+-....-...... .....+..... ..++- .|.
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~---------------k~~dw-~pd------------------ 255 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQ---------------KLLDW-RPD------------------ 255 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHH---------------hhccc-CCC------------------
Confidence 9999999986544332111111 01111110000 00000 000
Q ss_pred CCCCCCCCCCCCCceEEeecCCCCCCC-CCchhhHHhHHHHHHHHhhcCceeeEEE
Q psy2983 258 PQVSSSTAPPIATQCFLLANMFDPATE-TNPTWDVEIRDDVIEECNKHGVGASTVC 312 (370)
Q Consensus 258 ~~~~~~~~~~~ps~vl~L~Nm~~~~~l-~~d~~~~ei~eDv~~Ec~kyG~~~~~~~ 312 (370)
-..+......++|+|+|||+|+++ .+++...||+||+++||+|||.+-.+++
T Consensus 256 ---~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv 308 (382)
T KOG1548|consen 256 ---RDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVV 308 (382)
T ss_pred ---ccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEE
Confidence 001223456788999999999998 4559999999999999999999877665
No 39
>KOG0105|consensus
Probab=99.74 E-value=6.9e-17 Score=134.11 Aligned_cols=167 Identities=19% Similarity=0.308 Sum_probs=132.8
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
.+.+++|||+|||.++.+.+|+++|-+||.|..|.+...+ ....||||+|+++.+|+.|+. -+|..+.|..|.|..
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 4678999999999999999999999999999999885432 235799999999999999995 999999999999998
Q ss_pred ccccccccCCCC-------------CCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccE
Q psy2983 92 TQAEKNRAGNTL-------------PNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGY 158 (370)
Q Consensus 92 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~ 158 (370)
+..........- ....+...-...++.|++||++-+.++|+++..+.|.|-...+.+|. +
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-------~ 152 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-------V 152 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-------c
Confidence 865431111000 00011111223579999999999999999999999999998888773 8
Q ss_pred EEEEECCHHHHHHHHHHhCCceeC--CeeEEEE
Q psy2983 159 GFITFHSADDAKKAQEQLNGFELA--GRPMKVG 189 (370)
Q Consensus 159 afV~f~~~~~a~~A~~~l~g~~i~--g~~l~V~ 189 (370)
+.|+|...++..-|+..|+.+.+. |-...+.
T Consensus 153 GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred eeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 999999999999999999987765 4444443
No 40
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.72 E-value=4.4e-17 Score=162.87 Aligned_cols=133 Identities=31% Similarity=0.528 Sum_probs=115.4
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
..++|||+|||+.+++++|+++|++||.|.+++++.|+.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred cC------------------CCCcCCCCCCCCHHHHHHhcccCCceeeeeeeecc----ccCCC---CCChHHHHHHH
Q psy2983 193 DR------------------NESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKL----AEGTG---LELPPAAASAL 245 (370)
Q Consensus 193 ~~------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~----~~~~~---~~~~~~a~~a~ 245 (370)
.. ...+++++..+++++|+..|..||.+.++.++.+. .+|+| |....++..|+
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI 263 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 263 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHH
Confidence 21 12367899999999999999999999999998763 45565 45566665554
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=3.1e-16 Score=130.80 Aligned_cols=85 Identities=34% Similarity=0.679 Sum_probs=79.9
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
...++|||+|||+.+++++|+++|++||.|.++.++.|+.+++++|||||+|.+.++|+.|++.||+..|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCC
Q psy2983 192 TDRNE 196 (370)
Q Consensus 192 ~~~~~ 196 (370)
.++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76544
No 42
>KOG4211|consensus
Probab=99.67 E-value=1.2e-15 Score=144.15 Aligned_cols=173 Identities=21% Similarity=0.272 Sum_probs=138.6
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEec
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQP 91 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~ 91 (370)
+-.....|-+++||.++|++||.+||+.+ .|.++.+.+ .+|+..|-|||||.+.|++.+|++.+...+..+.|.|..
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 44566779999999999999999999999 588866555 458889999999999999999999999999999999987
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceee-EEEeecCCCCCcccEEEEEECCHHHHH
Q psy2983 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDN-IQLMVDPDTGRSKGYGFITFHSADDAK 170 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~-v~~~~~~~~g~~~g~afV~f~~~~~a~ 170 (370)
+....... ......+....+...|.+++||+.+|++||.++|+..-.+.. +-++.+ ..+++.|-|||+|++.+.|+
T Consensus 83 ~~~~e~d~--~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 83 AGGAEADW--VMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred cCCccccc--cccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHH
Confidence 75433211 111222222244568999999999999999999998766665 445555 47889999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEEe
Q psy2983 171 KAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 171 ~A~~~l~g~~i~g~~l~V~~~ 191 (370)
+|+. -|...|+-|-|.|-.+
T Consensus 160 ~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 160 IALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred HHHH-HHHHhhccceEEeehh
Confidence 9999 5777888888888554
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.65 E-value=4.8e-16 Score=129.63 Aligned_cols=83 Identities=25% Similarity=0.434 Sum_probs=77.9
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
...+++|||+|||..+++++|+++|++||.|.++.++.|..+++++|||||+|.+.++|+.|++ +++..|.|++|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3457889999999999999999999999999999999999999999999999999999999996 999999999999998
Q ss_pred cccc
Q psy2983 92 TQAE 95 (370)
Q Consensus 92 ~~~~ 95 (370)
+...
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 7654
No 44
>KOG0147|consensus
Probab=99.65 E-value=4.1e-16 Score=149.11 Aligned_cols=175 Identities=24% Similarity=0.278 Sum_probs=132.8
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
+.+-++|||+||-.++++++|+..|++||+|..|.+.+|..+|+++||+||+|.+.++|.+|++ |||..+-|+.|+|..
T Consensus 275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 3455569999999999999999999999999999999999999999999999999999999985 999999999999854
Q ss_pred ccccccccCC---C----------C------------------C-----------------------C-----CCCCCC-
Q psy2983 92 TQAEKNRAGN---T----------L------------------P-----------------------N-----LQPRGT- 111 (370)
Q Consensus 92 ~~~~~~~~~~---~----------~------------------~-----------------------~-----~~~~~~- 111 (370)
.......... . . . . ......
T Consensus 355 v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 434 (549)
T KOG0147|consen 355 VTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPAD 434 (549)
T ss_pred eeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccc
Confidence 3211110000 0 0 0 0 000000
Q ss_pred ------CCCceEEEecCCC--CCC--------HHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHH
Q psy2983 112 ------GGPMRLYIGSLHF--NIT--------EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175 (370)
Q Consensus 112 ------~~~~~l~V~nlp~--~~t--------~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 175 (370)
.+..++.+.|+=. ..| .+++.+-+.+||.|..|.+-++ +.|+.||.|.+.+.|..|+.+
T Consensus 435 ~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~a 509 (549)
T KOG0147|consen 435 ASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKA 509 (549)
T ss_pred cccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHH
Confidence 1223455555521 111 2788888999999977666333 349999999999999999999
Q ss_pred hCCceeCCeeEEEEEee
Q psy2983 176 LNGFELAGRPMKVGTVT 192 (370)
Q Consensus 176 l~g~~i~g~~l~V~~~~ 192 (370)
|||.-|.|+.|+..+..
T Consensus 510 lhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 510 LHGRWFAGRMITAKYLP 526 (549)
T ss_pred HhhhhhccceeEEEEee
Confidence 99999999999998853
No 45
>KOG4212|consensus
Probab=99.64 E-value=4.9e-15 Score=137.69 Aligned_cols=177 Identities=25% Similarity=0.423 Sum_probs=144.6
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhc-CCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEe
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSS-VGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQ 90 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~-~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~ 90 (370)
+...|.+||.|||+++..++|+++|.. .|+|..|.++.|.. ++++|+|.|||+++|.+++|++ |+...+.|++|.|+
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 345577999999999999999999985 89999999999864 8999999999999999999997 99999999999996
Q ss_pred cccccccc-cCCC-----------------------------------CCC-----------------------------
Q psy2983 91 PTQAEKNR-AGNT-----------------------------------LPN----------------------------- 105 (370)
Q Consensus 91 ~~~~~~~~-~~~~-----------------------------------~~~----------------------------- 105 (370)
....+... .... ...
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 44321100 0000 000
Q ss_pred -------CCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCC
Q psy2983 106 -------LQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNG 178 (370)
Q Consensus 106 -------~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 178 (370)
...-.++-..++||.||.+.+..+.|++.|.-.|.++.+.+-.|+ .|.++|+|.++|.++-.|..|+.+|++
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhcc
Confidence 000012223579999999999999999999999999999999997 679999999999999999999999999
Q ss_pred ceeCCeeEEEEEe
Q psy2983 179 FELAGRPMKVGTV 191 (370)
Q Consensus 179 ~~i~g~~l~V~~~ 191 (370)
.-+.+++..++..
T Consensus 279 ~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 279 QGLFDRRMTVRLD 291 (608)
T ss_pred CCCccccceeecc
Confidence 8888888877763
No 46
>KOG1548|consensus
Probab=99.60 E-value=8.9e-14 Score=126.16 Aligned_cols=180 Identities=18% Similarity=0.304 Sum_probs=141.0
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCee--------EEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccC
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVR--------DVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLL 83 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~--------~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~ 83 (370)
......|||.|||.++|.+++.++|+.||-|. .|++.++.. |..||=|++.|-..|++..|+. |++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44556699999999999999999999999764 367777765 8999999999999999999997 9999999
Q ss_pred CeeEEEecccccccccCCCC------------------------C-CCCCCCCCCCceEEEecCCC----CCC-------
Q psy2983 84 GIPIIVQPTQAEKNRAGNTL------------------------P-NLQPRGTGGPMRLYIGSLHF----NIT------- 127 (370)
Q Consensus 84 g~~l~v~~~~~~~~~~~~~~------------------------~-~~~~~~~~~~~~l~V~nlp~----~~t------- 127 (370)
|+.|+|++++.+........ + ...+......++|.+.|+=. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 99999998875432111110 0 01122233456888888731 122
Q ss_pred HHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecCCCC
Q psy2983 128 EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNES 197 (370)
Q Consensus 128 ~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~~~~ 197 (370)
.++|++-+++||.|.+|.+. ...+.|.+-|.|.+.+.|..|++.|+|.-|.||.|....-......
T Consensus 290 kedl~eec~K~G~v~~vvv~----d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~ 355 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVY----DRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKF 355 (382)
T ss_pred HHHHHHHHHHhCCcceEEEe----ccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCccee
Confidence 36788889999999999886 3446889999999999999999999999999999998876554443
No 47
>KOG0106|consensus
Probab=99.58 E-value=4.1e-15 Score=129.42 Aligned_cols=156 Identities=28% Similarity=0.555 Sum_probs=128.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh-hccCCccCCeeEEEeccccc
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGIPIIVQPTQAE 95 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~i~g~~l~v~~~~~~ 95 (370)
.+|||++||+.+.+.+|..||..||.+.++.+. .||+||+|.+..+|..|+ .+++..+.|..+.+.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999774 379999999999999999 69999999999888887743
Q ss_pred ccccCCCC-------CCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHH
Q psy2983 96 KNRAGNTL-------PNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADD 168 (370)
Q Consensus 96 ~~~~~~~~-------~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~ 168 (370)
........ ...-....-....+.+.+++..+...+|.+.|.++|.+..... ..+++||+|.+.++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 22111110 0111112234567999999999999999999999999854433 36689999999999
Q ss_pred HHHHHHHhCCceeCCeeEEE
Q psy2983 169 AKKAQEQLNGFELAGRPMKV 188 (370)
Q Consensus 169 a~~A~~~l~g~~i~g~~l~V 188 (370)
+.+|+..|+|..+.++.|.+
T Consensus 146 a~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred hhhcchhccchhhcCceeee
Confidence 99999999999999999999
No 48
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=1.3e-14 Score=105.45 Aligned_cols=70 Identities=47% Similarity=0.899 Sum_probs=67.4
Q ss_pred EEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q psy2983 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187 (370)
Q Consensus 117 l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 187 (370)
|||+|||.++++++|+++|++||.|..+.+..+ .++.++|+|||+|.+.++|.+|++.|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5899999999999999999999999999999999885
No 49
>KOG0131|consensus
Probab=99.57 E-value=8.6e-15 Score=121.62 Aligned_cols=118 Identities=26% Similarity=0.423 Sum_probs=105.6
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
+...+|||+||+..++++.|.++|-+.|+|..+++.+|..++..+||||++|.++++|.-|++.||...++|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCC--------CcCCCCCCCCHHHHHHhcccCCceee-eeeeecc
Q psy2983 192 TDRNE--------SVGGGPSNLDTDEMERAGVDLGATGR-LQLMFKL 229 (370)
Q Consensus 192 ~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~-~~l~~~~ 229 (370)
..... .++++...+++..|-..|+.||.+.+ .++|+..
T Consensus 87 s~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~ 133 (203)
T KOG0131|consen 87 SAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDP 133 (203)
T ss_pred ccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccc
Confidence 73322 26678889999999999999999865 4666663
No 50
>KOG1457|consensus
Probab=99.55 E-value=5.6e-14 Score=120.22 Aligned_cols=166 Identities=21% Similarity=0.315 Sum_probs=119.0
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEee-eCCCCCeecEEEEEecCCCChHHHh-hccCCccC---CeeE
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLIT-CNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLL---GIPI 87 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~-d~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~i~---g~~l 87 (370)
...-|||||.+||.++...+|+.+|..|--.+...+.. ++.....+-+|||.|.+..+|..|+ +|+|..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34579999999999999999999999985555554433 2222335689999999999999999 49999985 6677
Q ss_pred EEecccccccccC----CCCCC-------------C-------------------------C------------------
Q psy2983 88 IVQPTQAEKNRAG----NTLPN-------------L-------------------------Q------------------ 107 (370)
Q Consensus 88 ~v~~~~~~~~~~~----~~~~~-------------~-------------------------~------------------ 107 (370)
++..++....+.. ..+.+ . .
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 7765543221111 00000 0 0
Q ss_pred -------------CCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHH
Q psy2983 108 -------------PRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174 (370)
Q Consensus 108 -------------~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~ 174 (370)
......+.+|||.||..+++|++|+.+|+.|.-...+++... .| ...||++|++.+.|..|+.
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMN 266 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHH
Confidence 000011247999999999999999999999976555555422 23 3479999999999999999
Q ss_pred HhCCceeC
Q psy2983 175 QLNGFELA 182 (370)
Q Consensus 175 ~l~g~~i~ 182 (370)
.|.|..+-
T Consensus 267 ~lqg~~~s 274 (284)
T KOG1457|consen 267 HLQGNLLS 274 (284)
T ss_pred Hhhcceec
Confidence 99997764
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=1.2e-14 Score=105.79 Aligned_cols=69 Identities=29% Similarity=0.592 Sum_probs=65.8
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEE
Q psy2983 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPII 88 (370)
Q Consensus 19 v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~ 88 (370)
|||+|||.++|+++|+++|++||.|..+.+..+ .++..+|||||+|.+.++|..|++ ++|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 678899999999999999999997 999999999885
No 52
>KOG1190|consensus
Probab=99.55 E-value=4.1e-14 Score=130.72 Aligned_cols=168 Identities=19% Similarity=0.345 Sum_probs=124.6
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh---ccCCccCCeeEEE
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG---LNGQKLLGIPIIV 89 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~---l~g~~i~g~~l~v 89 (370)
..+++.|+++|||.+++|+||.+++.+||.|..+.+++. +..||+||.+.++|..-+. --.-.+.|++|+|
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYI 98 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeecc------chhhhhhhcchhhhhheeecccccCccccCcceee
Confidence 458899999999999999999999999999999988663 4489999999999887543 2333567889999
Q ss_pred ecccccccccCCCC--------------------CC----C---CCCCCCCCceEEEecCCCCCCHHHHHhcccCCCcee
Q psy2983 90 QPTQAEKNRAGNTL--------------------PN----L---QPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKID 142 (370)
Q Consensus 90 ~~~~~~~~~~~~~~--------------------~~----~---~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~ 142 (370)
+++....-...... +. . ....+..-.++.|+|+-+.++-+-|+++|++||.|.
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~Vl 178 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVL 178 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeE
Confidence 87753221111100 00 0 001111224688899999999999999999999998
Q ss_pred eEEEeecCCCCCcccE-EEEEECCHHHHHHHHHHhCCceeCCe--eEEEEEe
Q psy2983 143 NIQLMVDPDTGRSKGY-GFITFHSADDAKKAQEQLNGFELAGR--PMKVGTV 191 (370)
Q Consensus 143 ~v~~~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~i~g~--~l~V~~~ 191 (370)
+|.-+.. +.|| |+|+|.+.++|..|..+|+|+.|++- .|+|.++
T Consensus 179 KIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 179 KIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred EEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 8755422 2344 99999999999999999999999864 4444443
No 53
>KOG0124|consensus
Probab=99.54 E-value=1.2e-14 Score=132.42 Aligned_cols=114 Identities=33% Similarity=0.597 Sum_probs=103.6
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecC
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~ 194 (370)
+++|||.+.+.+.++.|+..|.+||+|++|.+--|+-|++++|||||+|+-+|.|+.|++.|||..++||.|+|.+...-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999864321
Q ss_pred C------------------CCcCCCCCCCCHHHHHHhcccCCceeeeeeeec
Q psy2983 195 N------------------ESVGGGPSNLDTDEMERAGVDLGATGRLQLMFK 228 (370)
Q Consensus 195 ~------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~ 228 (370)
. .++......+++++++..|+.||.+..+++.+.
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~ 245 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA 245 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeecc
Confidence 1 114567889999999999999999999999775
No 54
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.53 E-value=1.1e-13 Score=127.09 Aligned_cols=158 Identities=29% Similarity=0.442 Sum_probs=119.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecccc
Q psy2983 16 ARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQA 94 (370)
Q Consensus 16 ~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~~ 94 (370)
.++|||+|||..+++++|+++|..||.|..+.+..++.++.++|||||+|.+.++|..|++ ++|..|.|++|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999999899999999999999999999996 999999999999999642
Q ss_pred -cccccCCC----------CCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEE
Q psy2983 95 -EKNRAGNT----------LPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITF 163 (370)
Q Consensus 95 -~~~~~~~~----------~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f 163 (370)
...+.... ..............+++++++..++..++...|..+|.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 11111100 0111122233456799999999999999999999999997766654433333333344444
Q ss_pred CCHHHHHHHH
Q psy2983 164 HSADDAKKAQ 173 (370)
Q Consensus 164 ~~~~~a~~A~ 173 (370)
.....+....
T Consensus 275 ~~~~~~~~~~ 284 (306)
T COG0724 275 EASKDALESN 284 (306)
T ss_pred hHHHhhhhhh
Confidence 3333333333
No 55
>KOG0120|consensus
Probab=99.51 E-value=2.2e-13 Score=132.11 Aligned_cols=179 Identities=21% Similarity=0.343 Sum_probs=140.1
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
......+||++||...++.++.+++..||++....++.|..+|.++||||.+|.++.....|++ |+|+.+.++.|.|+.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 3456789999999999999999999999999999999999999999999999999999999996 999999999999988
Q ss_pred ccccccccCCCCC-------CCC----CCCCCCCceEEEecCC--CCC-CH-------HHHHhcccCCCceeeEEEeec-
Q psy2983 92 TQAEKNRAGNTLP-------NLQ----PRGTGGPMRLYIGSLH--FNI-TE-------DMLRGIFEPFGKIDNIQLMVD- 149 (370)
Q Consensus 92 ~~~~~~~~~~~~~-------~~~----~~~~~~~~~l~V~nlp--~~~-t~-------e~l~~~f~~~G~i~~v~~~~~- 149 (370)
+............ ... +........|++.|+= .+. .+ |+++.-+.+||.|..|.+.++
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~ 445 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPY 445 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCC
Confidence 7644322221111 000 1112223345555541 111 11 567777889999999999877
Q ss_pred C--CCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 150 P--DTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 150 ~--~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
. ...-..|..||+|.+.+++++|...|+|..|.||.+...+.
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 2 12346778999999999999999999999999999998884
No 56
>KOG0122|consensus
Probab=99.51 E-value=7e-14 Score=121.36 Aligned_cols=84 Identities=33% Similarity=0.547 Sum_probs=79.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
.....+|.|.||+.++++++|+++|.+||.|..+.+.+|++||.++|||||.|.+.++|.+|+..|||.-++.--|+|.|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q psy2983 191 VTDR 194 (370)
Q Consensus 191 ~~~~ 194 (370)
++++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 8875
No 57
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=1.8e-13 Score=99.77 Aligned_cols=70 Identities=41% Similarity=0.799 Sum_probs=65.1
Q ss_pred EEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q psy2983 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187 (370)
Q Consensus 117 l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 187 (370)
|||+|||+.+++++|+++|+.||.|..+.+..++. |.++|+|||+|.+.++|.+|+..++|..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 99999999999999999999999999999999875
No 58
>KOG0125|consensus
Probab=99.50 E-value=5.9e-14 Score=126.46 Aligned_cols=83 Identities=33% Similarity=0.666 Sum_probs=77.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q psy2983 110 GTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189 (370)
Q Consensus 110 ~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~ 189 (370)
...++++|+|+|||+...+.||+.+|++||.|.+|.|+.+ ...+||||||+|++.++|++|.+.|||..+.||+|.|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 4456789999999999999999999999999999999987 56789999999999999999999999999999999999
Q ss_pred EeecC
Q psy2983 190 TVTDR 194 (370)
Q Consensus 190 ~~~~~ 194 (370)
.+..+
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 98765
No 59
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.1e-13 Score=123.78 Aligned_cols=78 Identities=29% Similarity=0.516 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEecccc
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQA 94 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~~~ 94 (370)
..++|||+|||+.+|+++|+++|+.||+|.+|.|++++. ++|||||+|.++++|..|+.|+|..|.|+.|.|.+...
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 368999999999999999999999999999999998863 46899999999999999999999999999999998765
Q ss_pred c
Q psy2983 95 E 95 (370)
Q Consensus 95 ~ 95 (370)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 60
>KOG0122|consensus
Probab=99.49 E-value=1.1e-13 Score=120.09 Aligned_cols=82 Identities=28% Similarity=0.418 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
.+..+|-|.|||.+++|++|+++|.+||+|..+.+.+|+.||.+||||||.|.+.++|.+|++ |+|.-+..--|.|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 467889999999999999999999999999999999999999999999999999999999996 9999999999999998
Q ss_pred ccc
Q psy2983 93 QAE 95 (370)
Q Consensus 93 ~~~ 95 (370)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 753
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=7.2e-14 Score=101.91 Aligned_cols=69 Identities=32% Similarity=0.566 Sum_probs=62.9
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEE
Q psy2983 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPII 88 (370)
Q Consensus 19 v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~ 88 (370)
|||+|||+.+++++|+++|+.+|.|..+.+..++. +.++|+|||+|.+.++|.+|++ ++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877 8999999999999999999997 666999999874
No 62
>KOG0121|consensus
Probab=99.45 E-value=1.5e-13 Score=107.70 Aligned_cols=83 Identities=19% Similarity=0.291 Sum_probs=77.0
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEE
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV 89 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v 89 (370)
.+.+.+.||||+||+..++|++|+++|+.+|+|+.|.+=.|+.+...=|||||+|.+.++|..|+. ++|..+..++|.+
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 346889999999999999999999999999999999888888877788999999999999999998 9999999999999
Q ss_pred eccc
Q psy2983 90 QPTQ 93 (370)
Q Consensus 90 ~~~~ 93 (370)
.+..
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 8765
No 63
>KOG0107|consensus
Probab=99.44 E-value=2.8e-13 Score=112.04 Aligned_cols=77 Identities=29% Similarity=0.499 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEeccc
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~ 93 (370)
-.++|||+||+..+++.||...|..||++.+||+.+++ .|||||||+++.+|+.|+. |+|..|.|..|.|+.+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36889999999999999999999999999999998865 5999999999999999995 99999999999999887
Q ss_pred ccc
Q psy2983 94 AEK 96 (370)
Q Consensus 94 ~~~ 96 (370)
...
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 543
No 64
>KOG0149|consensus
Probab=99.43 E-value=1.7e-13 Score=118.59 Aligned_cols=79 Identities=33% Similarity=0.591 Sum_probs=73.1
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
-.+||||||++.+..+.|+.+|++||+|.+..++.|+.+|++||||||+|.+.++|.+|++ =.+-.|+||+..|..+.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhh
Confidence 4689999999999999999999999999999999999999999999999999999999998 456688999999987643
No 65
>KOG0125|consensus
Probab=99.43 E-value=4e-13 Score=121.15 Aligned_cols=85 Identities=27% Similarity=0.430 Sum_probs=76.9
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeE
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPI 87 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l 87 (370)
.++.....++|+|.|||....+.||+..|++||+|.+|.|+.+. +-||||+||.|.+++||++|-+ |||..+.||+|
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 34455667999999999999999999999999999999999976 4579999999999999999995 99999999999
Q ss_pred EEeccccc
Q psy2983 88 IVQPTQAE 95 (370)
Q Consensus 88 ~v~~~~~~ 95 (370)
.|..+...
T Consensus 167 EVn~ATar 174 (376)
T KOG0125|consen 167 EVNNATAR 174 (376)
T ss_pred EEeccchh
Confidence 99887754
No 66
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=4.9e-13 Score=117.66 Aligned_cols=78 Identities=23% Similarity=0.384 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEecccc
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQA 94 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~~~ 94 (370)
..++|||+||++.+|+++|++||+.||+|.+|.|++|. +.+++|||+|.++++|..|+.|+|..|.+++|.|.+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 56899999999999999999999999999999999984 456899999999999999999999999999999987654
Q ss_pred c
Q psy2983 95 E 95 (370)
Q Consensus 95 ~ 95 (370)
.
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 67
>KOG1190|consensus
Probab=99.42 E-value=3e-12 Score=118.53 Aligned_cols=168 Identities=18% Similarity=0.277 Sum_probs=132.7
Q ss_pred CCeEEEcCCC-CCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEeccc
Q psy2983 16 ARTIFCMQLS-QRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 16 ~r~v~V~nLp-~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~ 93 (370)
...|.|.||- ..+|.+.|..+|.-||.|..|+|+.+++ -.|+|+|.+...|.-|++ |+|..+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 5788999995 6789999999999999999999998763 469999999999999996 99999999999998887
Q ss_pred ccccccCCC-----------CCC----CC---C----CCCCCCceEEEecCCCCCCHHHHHhcccCCCce-eeEEEeecC
Q psy2983 94 AEKNRAGNT-----------LPN----LQ---P----RGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKI-DNIQLMVDP 150 (370)
Q Consensus 94 ~~~~~~~~~-----------~~~----~~---~----~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i-~~v~~~~~~ 150 (370)
...-..... ... .. . ....++.+|++.|+|.++++|+++.+|..-|.. ...++.
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff--- 448 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF--- 448 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---
Confidence 432111110 000 00 0 012344689999999999999999999888754 444443
Q ss_pred CCCCcccEEEEEECCHHHHHHHHHHhCCceeCC-eeEEEEEeec
Q psy2983 151 DTGRSKGYGFITFHSADDAKKAQEQLNGFELAG-RPMKVGTVTD 193 (370)
Q Consensus 151 ~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g-~~l~V~~~~~ 193 (370)
++.+.+|++.+.+.|+|..|+..+|++.+++ .-++|++++.
T Consensus 449 --~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 --QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred --CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 3346699999999999999999999999885 4899998754
No 68
>KOG0126|consensus
Probab=99.42 E-value=6.6e-14 Score=116.24 Aligned_cols=85 Identities=31% Similarity=0.645 Sum_probs=79.2
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
.+.-|||||||+.+||.+|.-+|++||.|..|.+++|+.||+++||||+.|++..+...|+..|||..|.||.|+|.+..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cCCCC
Q psy2983 193 DRNES 197 (370)
Q Consensus 193 ~~~~~ 197 (370)
....+
T Consensus 114 ~Yk~p 118 (219)
T KOG0126|consen 114 NYKKP 118 (219)
T ss_pred cccCC
Confidence 55443
No 69
>KOG0126|consensus
Probab=99.41 E-value=6.7e-14 Score=116.18 Aligned_cols=83 Identities=34% Similarity=0.484 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
+++--|||||||+..||.||.-+|++||.|.+|.+++|..||+|+||||+.|++..+..-|+. ++|..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 567789999999999999999999999999999999999999999999999999999999996 9999999999999876
Q ss_pred cccc
Q psy2983 93 QAEK 96 (370)
Q Consensus 93 ~~~~ 96 (370)
....
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 5543
No 70
>KOG0111|consensus
Probab=99.41 E-value=2.4e-13 Score=116.05 Aligned_cols=98 Identities=32% Similarity=0.580 Sum_probs=88.8
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
...++||||+|...+++.-|...|-+||.|..|+++.|-++++++|||||+|.-.|+|..|+..||+.++.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcCCCCCCCCHHH
Q psy2983 192 TDRNESVGGGPSNLDTDE 209 (370)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~ 209 (370)
.|.+...+...+-|.+++
T Consensus 88 kP~kikegsqkPvWADDd 105 (298)
T KOG0111|consen 88 KPEKIKEGSQKPVWADDD 105 (298)
T ss_pred CCccccCCCCCCcccCcH
Confidence 988877665555555443
No 71
>KOG0149|consensus
Probab=99.40 E-value=3.6e-13 Score=116.53 Aligned_cols=79 Identities=22% Similarity=0.297 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEecccc
Q psy2983 16 ARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQA 94 (370)
Q Consensus 16 ~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~~~ 94 (370)
-.+||||||+..+..++|+++|++||+|.+..++.|+.+++||||+||.|++.++|.+|++-..-.|+||+..+..+..
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 3679999999999999999999999999999999999999999999999999999999998777788888777765543
No 72
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.40 E-value=1.5e-12 Score=116.37 Aligned_cols=78 Identities=15% Similarity=0.333 Sum_probs=71.4
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
.++|||+|||+.+++++|+++|+.||.|.++.+..+.. ++|||||+|.++++|..|+. |+|..+.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 36899999999999999999999999999999998753 57899999999999999996 999999999999999864
Q ss_pred CC
Q psy2983 194 RN 195 (370)
Q Consensus 194 ~~ 195 (370)
..
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 43
No 73
>PLN03213 repressor of silencing 3; Provisional
Probab=99.40 E-value=7.5e-13 Score=125.01 Aligned_cols=78 Identities=21% Similarity=0.346 Sum_probs=69.9
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCC--CChHHHhh-ccCCccCCeeEEE
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP--ESVPLAMG-LNGQKLLGIPIIV 89 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~--e~A~~Al~-l~g~~i~g~~l~v 89 (370)
.....+||||||++.+++++|...|..||.|.+|.|++ .+| +|||||+|.+. .++.+|++ |+|..|.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34567899999999999999999999999999999994 456 89999999998 56899996 9999999999999
Q ss_pred ecccc
Q psy2983 90 QPTQA 94 (370)
Q Consensus 90 ~~~~~ 94 (370)
..+++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 88764
No 74
>KOG0107|consensus
Probab=99.38 E-value=1.1e-12 Score=108.59 Aligned_cols=78 Identities=26% Similarity=0.540 Sum_probs=72.6
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
.++|||+||+..+++.+|...|..||.|.+|++-..+ .|||||||+++.+|..|+..|+|..|.|..|+|+...-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 5789999999999999999999999999999998765 89999999999999999999999999999999999865
Q ss_pred CCC
Q psy2983 194 RNE 196 (370)
Q Consensus 194 ~~~ 196 (370)
...
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 544
No 75
>KOG0113|consensus
Probab=99.37 E-value=2.5e-12 Score=114.76 Aligned_cols=84 Identities=33% Similarity=0.593 Sum_probs=78.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
.++..+|||+-|+++++|..|+..|+.||+|+.|+++.|+.||+++|||||+|+++-+...|.+..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred eecC
Q psy2983 191 VTDR 194 (370)
Q Consensus 191 ~~~~ 194 (370)
-..+
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 5433
No 76
>KOG0121|consensus
Probab=99.37 E-value=1.1e-12 Score=102.92 Aligned_cols=79 Identities=28% Similarity=0.497 Sum_probs=74.9
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
.+.+|||+||...++||+|.++|+.+|+|+.|.+=.|+.+..+.|||||+|.+.++|..|+..++|..+..++|++.+.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 3579999999999999999999999999999999888888899999999999999999999999999999999999874
No 77
>KOG0109|consensus
Probab=99.36 E-value=1.7e-12 Score=115.35 Aligned_cols=106 Identities=25% Similarity=0.464 Sum_probs=97.6
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecC
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~ 194 (370)
.+|||||||..+++.+|+.+|++||.|.+|.|+++ ||||..++...+..|+..|||..+.|..|+|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 57999999999999999999999999999999955 9999999999999999999999999999999998877
Q ss_pred CC-----CcCCCCCCCCHHHHHHhcccCCceeeeeeeec
Q psy2983 195 NE-----SVGGGPSNLDTDEMERAGVDLGATGRLQLMFK 228 (370)
Q Consensus 195 ~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~ 228 (370)
.. .++++....+.++++..|.++|++..+.+.++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd 113 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD 113 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc
Confidence 33 37788888999999999999999988888765
No 78
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=4.8e-12 Score=91.46 Aligned_cols=72 Identities=43% Similarity=0.848 Sum_probs=67.4
Q ss_pred eEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q psy2983 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189 (370)
Q Consensus 116 ~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~ 189 (370)
+|+|+|||..+++++|+++|++||.+..+.+..++ +.++|+|||+|.+.++|.+|+..++|..+.|+.++|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998775 7889999999999999999999999999999998873
No 79
>KOG0113|consensus
Probab=99.34 E-value=3.2e-12 Score=114.05 Aligned_cols=81 Identities=25% Similarity=0.407 Sum_probs=76.6
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
..+=+||||+-|+++++|.+|+..|+.||+|..|.|++|..||+++|||||+|....+...|.+ .+|+.|+|+.|.|..
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 4677999999999999999999999999999999999999999999999999999999999995 999999999999976
Q ss_pred cc
Q psy2983 92 TQ 93 (370)
Q Consensus 92 ~~ 93 (370)
-.
T Consensus 178 ER 179 (335)
T KOG0113|consen 178 ER 179 (335)
T ss_pred cc
Confidence 54
No 80
>KOG4207|consensus
Probab=99.34 E-value=1.9e-12 Score=109.71 Aligned_cols=86 Identities=26% Similarity=0.391 Sum_probs=80.6
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPII 88 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~ 88 (370)
+++.....+|.|-||-+.++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|....+|+.|++ |+|..++|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 5666778899999999999999999999999999999999999999999999999999999999996 999999999999
Q ss_pred Eeccccc
Q psy2983 89 VQPTQAE 95 (370)
Q Consensus 89 v~~~~~~ 95 (370)
|+.+.-.
T Consensus 87 Vq~aryg 93 (256)
T KOG4207|consen 87 VQMARYG 93 (256)
T ss_pred ehhhhcC
Confidence 9877643
No 81
>KOG0114|consensus
Probab=99.34 E-value=5.1e-12 Score=95.52 Aligned_cols=80 Identities=20% Similarity=0.360 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
...|-|||+|||.++|.+++.++|.+||.|+.|++-..+ ..+|-|||.|++..+|.+|++ |+|..+.++.+.|-+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 456889999999999999999999999999999985544 458999999999999999996 9999999999999887
Q ss_pred cccc
Q psy2983 93 QAEK 96 (370)
Q Consensus 93 ~~~~ 96 (370)
++..
T Consensus 93 q~~~ 96 (124)
T KOG0114|consen 93 QPED 96 (124)
T ss_pred CHHH
Confidence 7543
No 82
>PLN03213 repressor of silencing 3; Provisional
Probab=99.33 E-value=3.7e-12 Score=120.42 Aligned_cols=77 Identities=25% Similarity=0.535 Sum_probs=71.0
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCH--HHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSA--DDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~--~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
...+||||||++.+++++|+.+|..||.|..+.|++ ++| +|||||+|.+. .++.+|+..|||..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 347899999999999999999999999999999994 467 99999999987 789999999999999999999999
Q ss_pred eec
Q psy2983 191 VTD 193 (370)
Q Consensus 191 ~~~ 193 (370)
+++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 864
No 83
>smart00362 RRM_2 RNA recognition motif.
Probab=99.33 E-value=4.3e-12 Score=91.72 Aligned_cols=71 Identities=35% Similarity=0.599 Sum_probs=65.5
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEe
Q psy2983 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQ 90 (370)
Q Consensus 18 ~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~ 90 (370)
+|||+|||..++.++|+++|++||+|..+.+.++. +.++|+|||+|.+.++|..|++ +++..+.|+++.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988876 6778999999999999999996 89999999998763
No 84
>smart00360 RRM RNA recognition motif.
Probab=99.33 E-value=5.5e-12 Score=90.76 Aligned_cols=71 Identities=52% Similarity=0.908 Sum_probs=67.0
Q ss_pred EecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q psy2983 119 IGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189 (370)
Q Consensus 119 V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~ 189 (370)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|..|+..+++..+.|+.++|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988789999999999999999999999999999999998873
No 85
>KOG0130|consensus
Probab=99.32 E-value=3.9e-12 Score=100.72 Aligned_cols=84 Identities=29% Similarity=0.498 Sum_probs=78.7
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
..-.|||+++....++++|.+.|..||+|+.+++-.|..+|-.+|||+|+|++.++|+.|+..+||..+.|+.|.|.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCC
Q psy2983 193 DRNE 196 (370)
Q Consensus 193 ~~~~ 196 (370)
.+..
T Consensus 151 v~gp 154 (170)
T KOG0130|consen 151 VKGP 154 (170)
T ss_pred ecCC
Confidence 5443
No 86
>KOG0130|consensus
Probab=99.30 E-value=2.5e-12 Score=101.73 Aligned_cols=83 Identities=23% Similarity=0.398 Sum_probs=76.8
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
.-..--|||.++-..++|++|.+.|..||+|..+.+..|+.||-.||||+|||.+.++|+.|++ +||..+.|++|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 3344569999999999999999999999999999999999999999999999999999999995 999999999999988
Q ss_pred cccc
Q psy2983 92 TQAE 95 (370)
Q Consensus 92 ~~~~ 95 (370)
.-..
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 7543
No 87
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.30 E-value=1.3e-11 Score=108.63 Aligned_cols=76 Identities=17% Similarity=0.255 Sum_probs=69.9
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
..+|||+||++.+|+++|+++|+.||.|.+|++++| +..+|+|||+|.+++.+..|+. |+|..|.+++|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 478999999999999999999999999999999987 3456899999999999999996 999999999999988654
No 88
>KOG0108|consensus
Probab=99.29 E-value=6.9e-12 Score=121.07 Aligned_cols=81 Identities=30% Similarity=0.424 Sum_probs=77.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEeccccc
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAE 95 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~~~ 95 (370)
+.|||||+|+++++++|.++|+..|+|.+++++.|+.+|+.+||||++|.+.++|..|++ |+|..+.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999996 9999999999999988754
Q ss_pred cc
Q psy2983 96 KN 97 (370)
Q Consensus 96 ~~ 97 (370)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 89
>KOG4207|consensus
Probab=99.28 E-value=4.8e-12 Score=107.29 Aligned_cols=82 Identities=29% Similarity=0.591 Sum_probs=77.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
.++-..|.|-||-+-++.++|+.+|++||.|-.|.|..|..|+.++|||||.|.+..+|+.|+++|+|..++|+.|.|+.
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 44557899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ee
Q psy2983 191 VT 192 (370)
Q Consensus 191 ~~ 192 (370)
+.
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 74
No 90
>KOG1456|consensus
Probab=99.28 E-value=1e-10 Score=107.28 Aligned_cols=168 Identities=21% Similarity=0.259 Sum_probs=132.1
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh---ccCCccCCeeEE
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG---LNGQKLLGIPII 88 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~---l~g~~i~g~~l~ 88 (370)
....+-.|+|++|-..++|.+|.+.++.||+|.-+..+.. ++.|.|||++.+.|.+|+. -+...+.|+.-.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhh
Confidence 4567889999999999999999999999999998877543 5679999999999999994 566678888888
Q ss_pred EecccccccccCCCCCCCCCCCCCCCceE--EEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCH
Q psy2983 89 VQPTQAEKNRAGNTLPNLQPRGTGGPMRL--YIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSA 166 (370)
Q Consensus 89 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~ 166 (370)
+.++..+.-+... .....++..| .|-|--+.+|-+-|..++.+.|+|..|-+++. +|. .|.|||++.
T Consensus 101 ~NyStsq~i~R~g------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv 169 (494)
T KOG1456|consen 101 FNYSTSQCIERPG------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSV 169 (494)
T ss_pred cccchhhhhccCC------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechh
Confidence 8877544322221 1111222333 34455578999999999999999999988865 443 699999999
Q ss_pred HHHHHHHHHhCCceeCC--eeEEEEEeecCCC
Q psy2983 167 DDAKKAQEQLNGFELAG--RPMKVGTVTDRNE 196 (370)
Q Consensus 167 ~~a~~A~~~l~g~~i~g--~~l~V~~~~~~~~ 196 (370)
+.|++|...|||..|+. -.|+|.++++..-
T Consensus 170 ~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 170 EVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred HHHHHHHhhcccccccccceeEEEEecCccee
Confidence 99999999999999984 5788888876543
No 91
>smart00360 RRM RNA recognition motif.
Probab=99.27 E-value=9.8e-12 Score=89.44 Aligned_cols=70 Identities=36% Similarity=0.612 Sum_probs=65.2
Q ss_pred EcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEe
Q psy2983 21 CMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQ 90 (370)
Q Consensus 21 V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~ 90 (370)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|++ +++..+.|+.+.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988788999999999999999999996 89999999998763
No 92
>KOG0114|consensus
Probab=99.27 E-value=1.9e-11 Score=92.44 Aligned_cols=78 Identities=29% Similarity=0.489 Sum_probs=70.9
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
.+.|||.|||+++|.|+..++|.+||.|..|++=. +..-+|-|||.|++..+|.+|+..|+|..+.++.+.|.+-++
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 46899999999999999999999999999999854 445589999999999999999999999999999999998655
Q ss_pred C
Q psy2983 194 R 194 (370)
Q Consensus 194 ~ 194 (370)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 3
No 93
>KOG0111|consensus
Probab=99.27 E-value=4.8e-12 Score=108.18 Aligned_cols=85 Identities=22% Similarity=0.475 Sum_probs=79.8
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
....|+|||++|...++|.-|...|-+||.|.+|.+..|..+.+++|||||+|.-.|+|..|+. +++..+.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 3467999999999999999999999999999999999999999999999999999999999996 999999999999999
Q ss_pred cccccc
Q psy2983 92 TQAEKN 97 (370)
Q Consensus 92 ~~~~~~ 97 (370)
+.+.+.
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 876543
No 94
>KOG0108|consensus
Probab=99.26 E-value=9e-12 Score=120.28 Aligned_cols=82 Identities=30% Similarity=0.652 Sum_probs=78.3
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecC
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~ 194 (370)
+.+||||+|+++++++|..+|+..|.|.++++..|+++|+++||||++|.+.++|..|++.|||.++.||+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred CC
Q psy2983 195 NE 196 (370)
Q Consensus 195 ~~ 196 (370)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 95
>KOG1365|consensus
Probab=99.25 E-value=7.4e-12 Score=115.01 Aligned_cols=175 Identities=20% Similarity=0.230 Sum_probs=133.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcC----CCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEe
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSV----GKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQ 90 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~----G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~ 90 (370)
+.--|..++||+++++.|+.+||.+- |-...|.+++.+ .|+..|-|||.|..+++|+.||..|...+.-|.|.+.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34457788999999999999999742 345667666654 4788899999999999999999988888888888776
Q ss_pred ccccccc-----ccC--C-----CC------CCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCC-ceee--EEEeec
Q psy2983 91 PTQAEKN-----RAG--N-----TL------PNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFG-KIDN--IQLMVD 149 (370)
Q Consensus 91 ~~~~~~~-----~~~--~-----~~------~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G-~i~~--v~~~~~ 149 (370)
++....- +.. . .. +...........+|.+++||+..+.|+|.++|..|- .|.. +++..+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 6643210 000 0 00 011111222356899999999999999999999886 3444 788877
Q ss_pred CCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 150 PDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 150 ~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
. .|+..|-|||+|.+.+.|..|....|+.....|-|.|-.+
T Consensus 319 ~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 319 G-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred C-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 4 7999999999999999999999999988888888888553
No 96
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.22 E-value=8.9e-11 Score=85.18 Aligned_cols=74 Identities=43% Similarity=0.837 Sum_probs=68.4
Q ss_pred eEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 116 ~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
+|+|+|||..+++++|+++|+.+|.|..+.+..++. +.++|+|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998863 47799999999999999999999999999999998863
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.21 E-value=5.6e-11 Score=86.25 Aligned_cols=73 Identities=40% Similarity=0.652 Sum_probs=66.6
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 18 ~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ ..+|+|||+|.+.++|..|++ +++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999887654 668999999999999999996 999999999998753
No 98
>KOG4212|consensus
Probab=99.20 E-value=3.1e-10 Score=106.08 Aligned_cols=71 Identities=37% Similarity=0.610 Sum_probs=66.5
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
++|+|.|||.++|.+.|++-|..||.|.+..++ +.|+++| .|.|.++++|++|+..|+|..+.||.|+|.+
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 469999999999999999999999999999985 4688887 8999999999999999999999999999986
No 99
>KOG4206|consensus
Probab=99.20 E-value=1.8e-10 Score=99.72 Aligned_cols=84 Identities=30% Similarity=0.566 Sum_probs=75.9
Q ss_pred CCceEEEecCCCCCCHHHHHh----cccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q psy2983 113 GPMRLYIGSLHFNITEDMLRG----IFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~----~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V 188 (370)
+..+|||.||+..+..++|+. +|++||.|..|... .+.+.+|-|||.|.+.+.|..|+..|+|..+.|++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345999999999999999988 99999999888776 47789999999999999999999999999999999999
Q ss_pred EEeecCCCCcC
Q psy2983 189 GTVTDRNESVG 199 (370)
Q Consensus 189 ~~~~~~~~~~~ 199 (370)
.++..+...+.
T Consensus 85 qyA~s~sdii~ 95 (221)
T KOG4206|consen 85 QYAKSDSDIIA 95 (221)
T ss_pred ecccCccchhh
Confidence 99988766544
No 100
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.20 E-value=6.5e-11 Score=108.56 Aligned_cols=80 Identities=40% Similarity=0.811 Sum_probs=76.8
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
..+|||+|||..+++++|.++|..||.+..+.+..++.+|.++|||||+|.+.++|..|+..++|..+.|++|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999653
No 101
>KOG4205|consensus
Probab=99.18 E-value=4.2e-11 Score=110.94 Aligned_cols=122 Identities=29% Similarity=0.600 Sum_probs=108.2
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
...+|||++|++.++++.|++.|.+||.|..+.+++|+.+++++||+||+|.+++...+++. ...+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 45789999999999999999999999999999999999999999999999999999999987 56788999999999887
Q ss_pred cCCCC-------------cCCCCCCCCHHHHHHhcccCCceeeeeeeec----cccCCCC
Q psy2983 193 DRNES-------------VGGGPSNLDTDEMERAGVDLGATGRLQLMFK----LAEGTGL 235 (370)
Q Consensus 193 ~~~~~-------------~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~----~~~~~~~ 235 (370)
++... +++++..+++.+++..|..+|.+....+|-+ ..++||+
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgf 143 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGF 143 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccccccccee
Confidence 66532 5688999999999999999998888888876 3446664
No 102
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.16 E-value=1.8e-10 Score=80.02 Aligned_cols=56 Identities=41% Similarity=0.797 Sum_probs=50.5
Q ss_pred HHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 131 LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 131 l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
|+++|++||.|.++.+..+. +|+|||+|.+.++|..|+..|||..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997553 689999999999999999999999999999999875
No 103
>KOG0105|consensus
Probab=99.16 E-value=1.5e-10 Score=96.66 Aligned_cols=113 Identities=21% Similarity=0.362 Sum_probs=92.8
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
..++|||+|||.++.+.+|.++|.+||.|..|.+-.. .....||||+|+++.+|..|+..-+|..++|..|+|.++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 3478999999999999999999999999999988533 2346799999999999999999999999999999999975
Q ss_pred cCCCC---------------------------------cCCCCCCCCHHHHHHhcccCCceeeeeeeec
Q psy2983 193 DRNES---------------------------------VGGGPSNLDTDEMERAGVDLGATGRLQLMFK 228 (370)
Q Consensus 193 ~~~~~---------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~ 228 (370)
.-... +.++|+.-+=++|+.+.-..|.+--+++.++
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD 150 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD 150 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc
Confidence 33111 3467777777888888888777766666655
No 104
>smart00361 RRM_1 RNA recognition motif.
Probab=99.16 E-value=1.3e-10 Score=84.64 Aligned_cols=62 Identities=29% Similarity=0.523 Sum_probs=55.4
Q ss_pred HHHHHhccc----CCCceeeEE-EeecCCC--CCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q psy2983 128 EDMLRGIFE----PFGKIDNIQ-LMVDPDT--GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189 (370)
Q Consensus 128 ~e~l~~~f~----~~G~i~~v~-~~~~~~~--g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~ 189 (370)
+++|+++|+ .||.|.++. +..++.+ |.++|+|||+|.+.++|.+|+..|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888888 999999995 6666666 8999999999999999999999999999999999863
No 105
>KOG0129|consensus
Probab=99.15 E-value=7.4e-10 Score=106.04 Aligned_cols=161 Identities=20% Similarity=0.243 Sum_probs=116.4
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEee-eCCC--CCeec---EEEEEecCCCChHHHhhccCCccCCe
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLIT-CNKT--RRFKG---IAYIEFKDPESVPLAMGLNGQKLLGI 85 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~-d~~~--~~~kg---~afVeF~~~e~A~~Al~l~g~~i~g~ 85 (370)
..+-+|+||||+||.+++|+.|...|..||.+.- .... .... -..+| |+|+-|+++..+...+.-.-. ...
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~--~~~ 331 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE--GEG 331 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh--ccc
Confidence 3567899999999999999999999999998763 3332 1111 12456 999999999998888741100 222
Q ss_pred eEEEeccccccccc---------CC-CCCCCCCCCCCCCceEEEecCCCCCCHHHHHhccc-CCCceeeEEEeecCCCCC
Q psy2983 86 PIIVQPTQAEKNRA---------GN-TLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFE-PFGKIDNIQLMVDPDTGR 154 (370)
Q Consensus 86 ~l~v~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~-~~G~i~~v~~~~~~~~g~ 154 (370)
.+++..+....... .+ ..-.......++.+|||||+||.-++.++|..+|+ -||.|..+-|-.|++-+-
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 22222111110000 00 00011334456778999999999999999999998 799999999999988899
Q ss_pred cccEEEEEECCHHHHHHHHHH
Q psy2983 155 SKGYGFITFHSADDAKKAQEQ 175 (370)
Q Consensus 155 ~~g~afV~f~~~~~a~~A~~~ 175 (370)
.+|-|-|.|.+..+-.+||.+
T Consensus 412 PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcceeeecccHHHHHHHhh
Confidence 999999999999999999983
No 106
>KOG4454|consensus
Probab=99.10 E-value=3e-11 Score=103.38 Aligned_cols=152 Identities=24% Similarity=0.368 Sum_probs=124.8
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEe
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQ 90 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~ 90 (370)
+....|||||.|+...++|+-|.++|-+.|+|..|.|..++. ++.| ||||+|.++-.+.-|++ ++|..+.+.++.++
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 445679999999999999999999999999999998876654 5555 99999999999999998 89999999988775
Q ss_pred cccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHH
Q psy2983 91 PTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAK 170 (370)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~ 170 (370)
.-..... .-|...++++.+...|+..|++..+++..+. +|+++.++|+.+......-
T Consensus 83 ~r~G~sh----------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P 139 (267)
T KOG4454|consen 83 LRCGNSH----------------------APLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVP 139 (267)
T ss_pred cccCCCc----------------------chhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCc
Confidence 5331110 0045667899999999999999999998886 5889999999999888888
Q ss_pred HHHHHhCCceeCCeeEEE
Q psy2983 171 KAQEQLNGFELAGRPMKV 188 (370)
Q Consensus 171 ~A~~~l~g~~i~g~~l~V 188 (370)
.++....+.+..-+++.+
T Consensus 140 ~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 140 FALDLYQGLELFQKKVTI 157 (267)
T ss_pred HHhhhhcccCcCCCCccc
Confidence 888877777665555544
No 107
>KOG4210|consensus
Probab=99.08 E-value=1.2e-10 Score=107.68 Aligned_cols=180 Identities=24% Similarity=0.360 Sum_probs=143.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCC-ccCCeeEEEecc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQ-KLLGIPIIVQPT 92 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~-~i~g~~l~v~~~ 92 (370)
+...+.|++++...+.+.+...++..+|...............++|++++.|+..+.+..|+++.+. ...++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4678999999999999999999999999888888877777788999999999999999999987775 444444433222
Q ss_pred cccccccCCCCCCCCCCCCCCCceEE-EecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHH
Q psy2983 93 QAEKNRAGNTLPNLQPRGTGGPMRLY-IGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKK 171 (370)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~ 171 (370)
........ ............++| +++++..+++++|+..|..+|.|..+++..+..++.++|+|+++|.....+..
T Consensus 166 ~~~~~~~~---n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~ 242 (285)
T KOG4210|consen 166 TRRGLRPK---NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKL 242 (285)
T ss_pred cccccccc---chhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHH
Confidence 21111010 011112223345566 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeCCeeEEEEEeecCCCC
Q psy2983 172 AQEQLNGFELAGRPMKVGTVTDRNES 197 (370)
Q Consensus 172 A~~~l~g~~i~g~~l~V~~~~~~~~~ 197 (370)
++.. +...+.++++.+.+..++...
T Consensus 243 ~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 243 ALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred Hhhc-ccCcccCcccccccCCCCccc
Confidence 9987 889999999999887766544
No 108
>KOG1456|consensus
Probab=99.06 E-value=4.6e-09 Score=96.63 Aligned_cols=166 Identities=21% Similarity=0.257 Sum_probs=128.9
Q ss_pred cccCCCCeEEEcCCC-CCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEE
Q psy2983 11 PEERDARTIFCMQLS-QRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPII 88 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp-~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~ 88 (370)
...-+...++|.+|. .+++.+.|.++|-.||.|..|++++.+ .|-|.||+.+..+.++|+. |++..+.|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 445677899999998 567899999999999999999999865 4789999999999999997 999999999999
Q ss_pred Eeccccccc------------------------ccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCc-eee
Q psy2983 89 VQPTQAEKN------------------------RAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGK-IDN 143 (370)
Q Consensus 89 v~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~-i~~ 143 (370)
|..++..-- +..........+-..+++.|+.-|.|..+||+.|..+|...+. -.+
T Consensus 357 v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~s 436 (494)
T KOG1456|consen 357 VCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTS 436 (494)
T ss_pred EeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcce
Confidence 976652111 1111111122233345678999999999999999999987653 456
Q ss_pred EEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCC
Q psy2983 144 IQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG 183 (370)
Q Consensus 144 v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g 183 (370)
++++.-+ +-++ .-+.+||++.++|..|+..+|...+.+
T Consensus 437 vkvFp~k-serS-ssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 437 VKVFPLK-SERS-SSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred EEeeccc-cccc-ccceeeeehHHHHHHHHHHhccccccC
Confidence 7777554 3332 258999999999999999999998875
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=99.04 E-value=4e-10 Score=82.11 Aligned_cols=60 Identities=28% Similarity=0.408 Sum_probs=54.1
Q ss_pred HHHHHHHhh----cCCCeeEEE-EeeeCCC--CCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEE
Q psy2983 30 TRDLEEFFS----SVGKVRDVR-LITCNKT--RRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV 89 (370)
Q Consensus 30 e~~L~~~f~----~~G~v~~v~-i~~d~~~--~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v 89 (370)
+++|+++|+ .||.|.++. +..++.+ +.++|||||+|.+.++|.+|+. |+|..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 999999995 7777666 8899999999999999999996 9999999999875
No 110
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=99.02 E-value=9.8e-11 Score=85.01 Aligned_cols=71 Identities=55% Similarity=0.950 Sum_probs=17.7
Q ss_pred HHHHHHhcccCCceeeeeeeeccccCCCCCChHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCceEEeecCCCCCCCCC
Q psy2983 207 TDEMERAGVDLGATGRLQLMFKLAEGTGLELPPAAASALNLAQNAILNSSTPQVSSSTAPPIATQCFLLANMFDPATETN 286 (370)
Q Consensus 207 ~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~a~~a~~~~~~~~~~p~~~~~~~~~~~~~ps~vl~L~Nm~~~~~l~~ 286 (370)
.++....+..+++.++.+||++++++.+.+.+.+++.+..+.+.. +++..+|+|++|+|||+|.++++
T Consensus 3 ~dd~d~~G~~l~a~sR~~LM~KLA~~~~~~~~~~~~~~~~~~~~~------------~~~~~aS~C~lLkNMFDP~~Ete 70 (73)
T PF15519_consen 3 SDDDDRGGVNLNATSRAALMAKLARGDGPQIPPAAQQALQPNGSI------------PIPPIASRCFLLKNMFDPAEETE 70 (73)
T ss_dssp ------------------------------------------------------------S---SEEEEESSS-TTCGGS
T ss_pred cccccccccccccccccccccccccccccccccccccccCcCCCC------------CCCCCCCceeeeecCCCcccccC
Confidence 345667788999999999999999998877766554443322221 22347899999999999999999
Q ss_pred chh
Q psy2983 287 PTW 289 (370)
Q Consensus 287 d~~ 289 (370)
++|
T Consensus 71 ~~W 73 (73)
T PF15519_consen 71 PDW 73 (73)
T ss_dssp TTH
T ss_pred CCC
Confidence 887
No 111
>KOG0128|consensus
Probab=99.01 E-value=2e-11 Score=122.57 Aligned_cols=151 Identities=24% Similarity=0.410 Sum_probs=130.9
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEecc
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~ 92 (370)
.|+..++||+||++.+.+.+|...|..+|.+..+++..-...++.+|+||++|..++++.+|+++....+.|+
T Consensus 664 ~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK------- 736 (881)
T KOG0128|consen 664 IRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK------- 736 (881)
T ss_pred HHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh-------
Confidence 3666789999999999999999999999988877766444557889999999999999999998776666661
Q ss_pred cccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHH
Q psy2983 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172 (370)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A 172 (370)
..++|.|.|+..|.++++.++..+|.+.+.+++..+ .|+.+|.|+|.|.++.++.++
T Consensus 737 ----------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~ 793 (881)
T KOG0128|consen 737 ----------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRK 793 (881)
T ss_pred ----------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhh
Confidence 358999999999999999999999999999887775 899999999999999999999
Q ss_pred HHHhCCceeCCeeEEEEEeec
Q psy2983 173 QEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 173 ~~~l~g~~i~g~~l~V~~~~~ 193 (370)
+...++..+.-+-+.|...++
T Consensus 794 ~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 794 VASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred cccchhhhhhhcCccccccCC
Confidence 998888888777777766544
No 112
>KOG4208|consensus
Probab=99.01 E-value=8.2e-10 Score=94.11 Aligned_cols=81 Identities=26% Similarity=0.456 Sum_probs=75.0
Q ss_pred CceEEEecCCCCCCHHHHHhcccCC-CceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPF-GKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~-G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
..-+|+..+|..+.+.++..+|.+| |.+..+++-+++.||.++|||||+|++++.|.-|-+.||++.+.++.|.|++-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 3469999999999999999999999 788889998999999999999999999999999999999999999999999865
Q ss_pred cC
Q psy2983 193 DR 194 (370)
Q Consensus 193 ~~ 194 (370)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 43
No 113
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.99 E-value=5e-10 Score=77.77 Aligned_cols=55 Identities=31% Similarity=0.617 Sum_probs=48.9
Q ss_pred HHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 33 L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
|+++|++||+|.++.+.++. +++|||+|.+.++|..|++ |+|..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999987643 5899999999999999996 9999999999999874
No 114
>KOG4211|consensus
Probab=98.98 E-value=5.3e-09 Score=99.64 Aligned_cols=173 Identities=21% Similarity=0.328 Sum_probs=128.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEecc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRD-VRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~-v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~ 92 (370)
-..-.|-+++||..+|++||.+||+..-.|.. |.++.++. +++.|-|||.|++.+.|++||..+...|..+-|.|.++
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 45678999999999999999999998765555 44555554 66889999999999999999998888888888888554
Q ss_pred cccccccCC--------------------C---------------------------------CC---------------
Q psy2983 93 QAEKNRAGN--------------------T---------------------------------LP--------------- 104 (370)
Q Consensus 93 ~~~~~~~~~--------------------~---------------------------------~~--------------- 104 (370)
.....+... . ..
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 311100000 0 00
Q ss_pred CCC--C----------CCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHH
Q psy2983 105 NLQ--P----------RGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172 (370)
Q Consensus 105 ~~~--~----------~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A 172 (370)
... + ........++.++||+..++.+|..+|+..-.+ .+++-..+ +|+..|-|+|+|.+.++|..|
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~-dGr~TGEAdveF~t~edav~A 337 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGP-DGRATGEADVEFATGEDAVGA 337 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCC-CCccCCcceeecccchhhHhh
Confidence 000 0 001112568999999999999999999987655 67777664 899999999999999999999
Q ss_pred HHHhCCceeCCeeEEEEE
Q psy2983 173 QEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 173 ~~~l~g~~i~g~~l~V~~ 190 (370)
+. -++..+..+-+..-.
T Consensus 338 ms-kd~anm~hrYVElFl 354 (510)
T KOG4211|consen 338 MG-KDGANMGHRYVELFL 354 (510)
T ss_pred hc-cCCcccCcceeeecc
Confidence 98 477777777665533
No 115
>KOG0415|consensus
Probab=98.96 E-value=9.3e-10 Score=100.44 Aligned_cols=82 Identities=26% Similarity=0.387 Sum_probs=77.8
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
++.+.|||..|.+-+++++|.-+|+.||.|.+|.+++|..+|.+.-||||+|.+.+++.+|.-.|++..|.+++|+|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 34478999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ec
Q psy2983 192 TD 193 (370)
Q Consensus 192 ~~ 193 (370)
..
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 54
No 116
>KOG4208|consensus
Probab=98.91 E-value=2.1e-09 Score=91.69 Aligned_cols=84 Identities=20% Similarity=0.341 Sum_probs=75.1
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcC-CCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEE
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSV-GKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV 89 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~-G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v 89 (370)
.....-.+||..+|..+-+.++..+|.++ |.|..+++.|+++||.|||||||||.+++.|..|-+ ||+..+.|+.|.+
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34455679999999999999999999998 889999999999999999999999999999999996 9999999999888
Q ss_pred eccccc
Q psy2983 90 QPTQAE 95 (370)
Q Consensus 90 ~~~~~~ 95 (370)
..-.++
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 765443
No 117
>KOG0415|consensus
Probab=98.88 E-value=2.5e-09 Score=97.68 Aligned_cols=83 Identities=27% Similarity=0.312 Sum_probs=78.7
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh-hccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~i~g~~l~v~~ 91 (370)
..+.+.|||.-|.+-++.++|.-.|+.||+|.++.+++|.+||.+-.||||||.+.+++++|. +++...|.+++|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 457789999999999999999999999999999999999999999999999999999999999 7999999999999998
Q ss_pred cccc
Q psy2983 92 TQAE 95 (370)
Q Consensus 92 ~~~~ 95 (370)
++.-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8754
No 118
>KOG0153|consensus
Probab=98.86 E-value=8.5e-09 Score=94.23 Aligned_cols=80 Identities=21% Similarity=0.445 Sum_probs=72.4
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh--ccCCccCCee
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG--LNGQKLLGIP 86 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~--l~g~~i~g~~ 86 (370)
-+++....++|||++|-..++|.+|+++|.+||+|+++.+... +++|||+|.+.++|+.|.+ ++...|+|++
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 3556678899999999999999999999999999999998764 5699999999999999995 8888999999
Q ss_pred EEEecccc
Q psy2983 87 IIVQPTQA 94 (370)
Q Consensus 87 l~v~~~~~ 94 (370)
|+|.|..+
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999877
No 119
>KOG1365|consensus
Probab=98.85 E-value=9.3e-08 Score=88.41 Aligned_cols=175 Identities=21% Similarity=0.265 Sum_probs=123.6
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEec
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQP 91 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~ 91 (370)
...+...|..++||...+..+|..||....-......+.....|+..|.|.|.|.++|.-+.|++-+..-+.++.|.|-.
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYk 135 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYK 135 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeec
Confidence 34556678889999999999999999875322222233333446667899999999999999999888888999998866
Q ss_pred ccccccccCCC--CCCCCCCCC-CCCceEEEecCCCCCCHHHHHhcccCC----CceeeEEEeecCCCCCcccEEEEEEC
Q psy2983 92 TQAEKNRAGNT--LPNLQPRGT-GGPMRLYIGSLHFNITEDMLRGIFEPF----GKIDNIQLMVDPDTGRSKGYGFITFH 164 (370)
Q Consensus 92 ~~~~~~~~~~~--~~~~~~~~~-~~~~~l~V~nlp~~~t~e~l~~~f~~~----G~i~~v~~~~~~~~g~~~g~afV~f~ 164 (370)
+..+.--.-.. .....+..+ ...-.|..++||+++++.++.++|.+- |....+-++..+ +|+..|-|||.|.
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa 214 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFA 214 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEec
Confidence 65432211110 000001111 122458889999999999999999643 244556666554 7999999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEE
Q psy2983 165 SADDAKKAQEQLNGFELAGRPMKV 188 (370)
Q Consensus 165 ~~~~a~~A~~~l~g~~i~g~~l~V 188 (370)
.+++|+.|+. -|...++.|-|.+
T Consensus 215 ~ee~aq~aL~-khrq~iGqRYIEl 237 (508)
T KOG1365|consen 215 CEEDAQFALR-KHRQNIGQRYIEL 237 (508)
T ss_pred CHHHHHHHHH-HHHHHHhHHHHHH
Confidence 9999999998 4666666665544
No 120
>KOG0112|consensus
Probab=98.79 E-value=4.8e-09 Score=106.15 Aligned_cols=162 Identities=22% Similarity=0.316 Sum_probs=133.2
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh-hccCCccCCeeEEEe
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGIPIIVQ 90 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~i~g~~l~v~ 90 (370)
+.+..+|||++||+..+++.+|+..|..+|.|.+|.|.+-+. +....||||.|.+...+-.|. ++.+..|....+.+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 347789999999999999999999999999999999865432 444579999999999999998 588887766555554
Q ss_pred cccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHH
Q psy2983 91 PTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAK 170 (370)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~ 170 (370)
.... .......+++++|+..+....+...|..||.|..|.+-+. .-||++.|++...++
T Consensus 447 lG~~---------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq 505 (975)
T KOG0112|consen 447 LGQP---------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQ 505 (975)
T ss_pred cccc---------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccch
Confidence 4432 1223467999999999999999999999999999877533 349999999999999
Q ss_pred HHHHHhCCceeCC--eeEEEEEeecCC
Q psy2983 171 KAQEQLNGFELAG--RPMKVGTVTDRN 195 (370)
Q Consensus 171 ~A~~~l~g~~i~g--~~l~V~~~~~~~ 195 (370)
.|+..|-|..|++ ++++|.++.+..
T Consensus 506 ~a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 506 AATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred hhHHHHhcCcCCCCCcccccccccCCC
Confidence 9999999999985 778888876543
No 121
>KOG0226|consensus
Probab=98.76 E-value=6.5e-09 Score=91.17 Aligned_cols=166 Identities=21% Similarity=0.365 Sum_probs=122.6
Q ss_pred eEEEcCCCCCCcHHH-H--HHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEeccc
Q psy2983 18 TIFCMQLSQRIRTRD-L--EEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 18 ~v~V~nLp~~~te~~-L--~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~ 93 (370)
..+++++-..+..+- | ...|+.+-......++++.. +...+++|+.|.....-.++-. -++..+.-.++++...+
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 455555554444333 3 56777776666666666654 4567899998877665555553 55556655555554433
Q ss_pred ccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHH
Q psy2983 94 AEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173 (370)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~ 173 (370)
.... .....-.....+||.|.|..+++++-|-..|.+|-.-...++++|+.+|+++||+||.|.+.+++..|+
T Consensus 177 swed-------Psl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAm 249 (290)
T KOG0226|consen 177 SWED-------PSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAM 249 (290)
T ss_pred ccCC-------cccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHH
Confidence 2221 112222344578999999999999999999999988888999999999999999999999999999999
Q ss_pred HHhCCceeCCeeEEEEEe
Q psy2983 174 EQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 174 ~~l~g~~i~g~~l~V~~~ 191 (370)
..|+|.-++.++|+.+..
T Consensus 250 rem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 250 REMNGKYVGSRPIKLRKS 267 (290)
T ss_pred HhhcccccccchhHhhhh
Confidence 999999999999988654
No 122
>KOG0146|consensus
Probab=98.71 E-value=1.5e-08 Score=89.40 Aligned_cols=84 Identities=20% Similarity=0.359 Sum_probs=77.9
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEe
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQ 90 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~ 90 (370)
+-.+.+.|||..||.+..+.||.+.|-+||.|.+.++..|+.|+.+|.|+||.|.++.+|+.|+. +||..|.=++|+|+
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 34678999999999999999999999999999999999999999999999999999999999995 99999999999998
Q ss_pred ccccc
Q psy2983 91 PTQAE 95 (370)
Q Consensus 91 ~~~~~ 95 (370)
..+++
T Consensus 361 LKRPk 365 (371)
T KOG0146|consen 361 LKRPK 365 (371)
T ss_pred hcCcc
Confidence 76543
No 123
>KOG0132|consensus
Probab=98.70 E-value=2.6e-08 Score=99.48 Aligned_cols=75 Identities=31% Similarity=0.567 Sum_probs=70.1
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecC
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~ 194 (370)
+|||||+|+..+++.+|..+|+.||.|.+|.++.. +|+|||......+|.+|+.+|++..+.++.|+|.|+..+
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 68999999999999999999999999999988755 789999999999999999999999999999999998654
Q ss_pred C
Q psy2983 195 N 195 (370)
Q Consensus 195 ~ 195 (370)
.
T Consensus 496 G 496 (894)
T KOG0132|consen 496 G 496 (894)
T ss_pred C
Confidence 3
No 124
>KOG0153|consensus
Probab=98.69 E-value=6.1e-08 Score=88.71 Aligned_cols=81 Identities=28% Similarity=0.462 Sum_probs=70.0
Q ss_pred CCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhC-CceeCCee
Q psy2983 107 QPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLN-GFELAGRP 185 (370)
Q Consensus 107 ~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~i~g~~ 185 (370)
.+.......+|||++|...+++.+|+++|.+||.|+++.+... +|+|||+|.+.++|+.|...+- ...|.|++
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 3334445579999999999999999999999999999998865 5699999999999999888665 46689999
Q ss_pred EEEEEeec
Q psy2983 186 MKVGTVTD 193 (370)
Q Consensus 186 l~V~~~~~ 193 (370)
|+|.|..+
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999887
No 125
>KOG4660|consensus
Probab=98.66 E-value=3.4e-08 Score=95.62 Aligned_cols=174 Identities=20% Similarity=0.259 Sum_probs=114.3
Q ss_pred CCCCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccC
Q psy2983 5 YSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLL 83 (370)
Q Consensus 5 ~~~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~ 83 (370)
.-+.+++..-.+++|+|-|||..+++++|++.|+.||+|+.|+.-+ ...|.+||+|.+..+|+.|++ |++..+.
T Consensus 64 ~~~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~ 138 (549)
T KOG4660|consen 64 RPDNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIA 138 (549)
T ss_pred CcCCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhh
Confidence 3356666678899999999999999999999999999999976533 447899999999999999995 9999999
Q ss_pred CeeEEEecccccccccC-CC--------CCC-CCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCC
Q psy2983 84 GIPIIVQPTQAEKNRAG-NT--------LPN-LQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTG 153 (370)
Q Consensus 84 g~~l~v~~~~~~~~~~~-~~--------~~~-~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g 153 (370)
|+.++- .......... .. .+. ..+.+.-....+ ++.|++..+..-++..+.-+|.+.. +. ++
T Consensus 139 ~~~~k~-~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~-~g~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~ 210 (549)
T KOG4660|consen 139 GKRIKR-PGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQL-FGMLSPTRSSILLEHISSVDGSSPG-RE-----TP 210 (549)
T ss_pred hhhhcC-CCcccccchhcccchhhhhccchhhcCCCCCCcCCcc-eeeeccchhhhhhhcchhccCcccc-cc-----cc
Confidence 998882 1111111000 00 000 001111111223 3338888888767777777776654 32 22
Q ss_pred CcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 154 RSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 154 ~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
.-.-.-|++|.+..++..+.... |..+.+....+++..
T Consensus 211 ~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~ 248 (549)
T KOG4660|consen 211 LLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSG 248 (549)
T ss_pred chhhhhhhhhccccchhhcccCC-ceecCCCCceEEecC
Confidence 22225678888888886665533 666666665555543
No 126
>KOG4661|consensus
Probab=98.65 E-value=3.8e-08 Score=95.00 Aligned_cols=83 Identities=22% Similarity=0.357 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
--.|.|||.+|...+...+|+++|++||+|...+++.+..+.-.+.|+||.+.+.++|.+||+ |+...++|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 346899999999999999999999999999999999999888889999999999999999997 9999999999999887
Q ss_pred cccc
Q psy2983 93 QAEK 96 (370)
Q Consensus 93 ~~~~ 96 (370)
+.+.
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 6543
No 127
>KOG0132|consensus
Probab=98.63 E-value=4.2e-08 Score=98.03 Aligned_cols=76 Identities=20% Similarity=0.360 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
--+||||||+||..++|.||.++|+.||.|.+|.++.. +|+|||.+....+|.+|+. |....+.++.|+|.|.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 35799999999999999999999999999999988654 6899999999999999995 9999999999999998
Q ss_pred ccc
Q psy2983 93 QAE 95 (370)
Q Consensus 93 ~~~ 95 (370)
...
T Consensus 493 ~g~ 495 (894)
T KOG0132|consen 493 VGK 495 (894)
T ss_pred ccC
Confidence 654
No 128
>KOG0533|consensus
Probab=98.63 E-value=1e-07 Score=85.18 Aligned_cols=85 Identities=27% Similarity=0.582 Sum_probs=77.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
...+.+|+|.|||+.+++++|+++|..||.+..+-+.+++ .|.+.|.|-|.|...++|.+|++.++|..+.|++|++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445789999999999999999999999999999999996 999999999999999999999999999999999999988
Q ss_pred eecCCC
Q psy2983 191 VTDRNE 196 (370)
Q Consensus 191 ~~~~~~ 196 (370)
..+...
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 655433
No 129
>KOG4307|consensus
Probab=98.59 E-value=1.8e-07 Score=92.43 Aligned_cols=184 Identities=15% Similarity=0.107 Sum_probs=138.8
Q ss_pred CCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCee
Q psy2983 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIP 86 (370)
Q Consensus 7 ~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~ 86 (370)
-..++-..+...+-+++++.+.++.|+++||... .|.++.|..++-.+...|.++|+|....++.+|++-+...+-.|.
T Consensus 302 gstpqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~ 380 (944)
T KOG4307|consen 302 GSTPQVVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRP 380 (944)
T ss_pred CCCCcccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcc
Confidence 3445555667778889999999999999999864 477777777777666689999999999999999998888888888
Q ss_pred EEEecccccccccCC-----CC--------------C-------CCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCc
Q psy2983 87 IIVQPTQAEKNRAGN-----TL--------------P-------NLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGK 140 (370)
Q Consensus 87 l~v~~~~~~~~~~~~-----~~--------------~-------~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~ 140 (370)
+.+............ .. + ...+.......+|||-.||..+++..+.+.|...-.
T Consensus 381 ~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~ 460 (944)
T KOG4307|consen 381 FQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAA 460 (944)
T ss_pred eeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhh
Confidence 888654322111000 00 0 000011112368999999999999999999998887
Q ss_pred eee-EEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 141 IDN-IQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 141 i~~-v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
|++ |.|.+.+ +++.++.|||+|..++.+..|...-+.+-++.+.|+|.-..
T Consensus 461 Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 461 VEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred hhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 777 6665554 78889999999999999999988667777788899997643
No 130
>KOG0116|consensus
Probab=98.57 E-value=1.8e-07 Score=90.23 Aligned_cols=82 Identities=18% Similarity=0.308 Sum_probs=70.2
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEecc
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~ 92 (370)
.+...+|||+|||.+++.++|+++|..||+|....|......++...||||+|.+.+++..|++.+...+.++++.|..-
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEK 364 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEec
Confidence 34556699999999999999999999999999988866544455559999999999999999998899999999999755
Q ss_pred cc
Q psy2983 93 QA 94 (370)
Q Consensus 93 ~~ 94 (370)
..
T Consensus 365 ~~ 366 (419)
T KOG0116|consen 365 RP 366 (419)
T ss_pred cc
Confidence 43
No 131
>KOG1457|consensus
Probab=98.56 E-value=2.6e-06 Score=73.72 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=65.6
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEee-cCCCCCcccEEEEEECCHHHHHHHHHHhCCceeC---CeeEEE
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMV-DPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA---GRPMKV 188 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~-~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~---g~~l~V 188 (370)
.-++|||.+||.++...+|..+|..|.--+...+-. ++.....+-+||+.|.+..+|..|+.+|||..|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 358999999999999999999999986555544432 2222335579999999999999999999999997 788999
Q ss_pred EEeec
Q psy2983 189 GTVTD 193 (370)
Q Consensus 189 ~~~~~ 193 (370)
..++.
T Consensus 113 ElAKS 117 (284)
T KOG1457|consen 113 ELAKS 117 (284)
T ss_pred eehhc
Confidence 88754
No 132
>KOG4209|consensus
Probab=98.51 E-value=1.1e-07 Score=85.27 Aligned_cols=85 Identities=26% Similarity=0.342 Sum_probs=78.7
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEe
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQ 90 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~ 90 (370)
+..-+.+.+||+|+...+|-+++...|+.||.|..+.+..|..++.+||||||+|.+.+.+..++.++|..+.|+.+.+.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccccc
Q psy2983 91 PTQAE 95 (370)
Q Consensus 91 ~~~~~ 95 (370)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 76543
No 133
>KOG4661|consensus
Probab=98.36 E-value=1.2e-06 Score=85.02 Aligned_cols=80 Identities=24% Similarity=0.474 Sum_probs=74.5
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
.+.|||.+|...+...+|+.+|++||.|.-.+++.+..+...+.|+||++.+.++|.++|..||..++.|+.|.|..++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 36799999999999999999999999999999998877777788999999999999999999999999999999998754
No 134
>KOG0226|consensus
Probab=98.36 E-value=2.8e-07 Score=81.10 Aligned_cols=85 Identities=24% Similarity=0.421 Sum_probs=76.9
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh-hccCCccCCeeEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGIPII 88 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~i~g~~l~ 88 (370)
.+-..+.-+||++.|..+++.+.|-..|.+|-.-...++++|..+|+++||+||.|.++.++..|+ +++|..++.++|+
T Consensus 184 ~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 184 AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 344566778999999999999999999999988888899999999999999999999999999999 5999999999998
Q ss_pred Eecccc
Q psy2983 89 VQPTQA 94 (370)
Q Consensus 89 v~~~~~ 94 (370)
.+.+..
T Consensus 264 lRkS~w 269 (290)
T KOG0226|consen 264 LRKSEW 269 (290)
T ss_pred hhhhhH
Confidence 876654
No 135
>KOG0128|consensus
Probab=98.35 E-value=4.7e-08 Score=98.76 Aligned_cols=201 Identities=16% Similarity=0.200 Sum_probs=150.7
Q ss_pred cCCCCeEEEcCCCCCCcHH-HHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTR-DLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~-~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~ 91 (370)
....+..++.++.+..... ..+..|..+|.|..|++...+.......++++.+....++..|....+..+.++...+..
T Consensus 568 ~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ 647 (881)
T KOG0128|consen 568 PLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGL 647 (881)
T ss_pred hhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCC
Confidence 3455667888887777665 567889999999999886633323333489999999999999999999999999888877
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHH
Q psy2983 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKK 171 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~ 171 (370)
+.+....... ...+...-.-.++|++||+..+.+++|+..|.++|.+..+++......+..+|+|+++|..++++.+
T Consensus 648 ad~~~~~~~~---kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~a 724 (881)
T KOG0128|consen 648 ADAEEKEENF---KVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGA 724 (881)
T ss_pred CCchhhhhcc---CcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhh
Confidence 6654421111 1111111123579999999999999999999999988887776555689999999999999999999
Q ss_pred HHHHhCCceeCCeeEEEEEeecCCCCcCCCCCCCCHHHHHHhcccCCceeeeeee
Q psy2983 172 AQEQLNGFELAGRPMKVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLM 226 (370)
Q Consensus 172 A~~~l~g~~i~g~~l~V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~ 226 (370)
|+...+++.++...+-| .+.|..-+.+.++..+..+|...+..+.
T Consensus 725 aV~f~d~~~~gK~~v~i----------~g~pf~gt~e~~k~l~~~~gn~~~~~~v 769 (881)
T KOG0128|consen 725 AVAFRDSCFFGKISVAI----------SGPPFQGTKEELKSLASKTGNVTSLRLV 769 (881)
T ss_pred hhhhhhhhhhhhhhhhe----------eCCCCCCchHHHHhhccccCCccccchh
Confidence 99977776666333333 3456667788899999999988765443
No 136
>KOG4676|consensus
Probab=98.35 E-value=1.8e-07 Score=86.84 Aligned_cols=164 Identities=20% Similarity=0.236 Sum_probs=123.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeC---CCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEeccc
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCN---KTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~---~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~~ 93 (370)
..|.|.||.+.+|.++++.+|...|+|.++.++... ........|||.|.+...+..|-.|....|-++.|.|.+..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 489999999999999999999999999999987633 23445678999999999999999999999999988885543
Q ss_pred ccccccC---------CCCCCCCC------------------------CC----------CCCCceEEEecCCCCCCHHH
Q psy2983 94 AEKNRAG---------NTLPNLQP------------------------RG----------TGGPMRLYIGSLHFNITEDM 130 (370)
Q Consensus 94 ~~~~~~~---------~~~~~~~~------------------------~~----------~~~~~~l~V~nlp~~~t~e~ 130 (370)
....... ...+...+ +. ..-.++++|++|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 2111000 00000000 00 00014699999999999999
Q ss_pred HHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCee
Q psy2983 131 LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRP 185 (370)
Q Consensus 131 l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 185 (370)
+.+.|+.+|.|...++. .|...-+|.++|....+...|+. ++|.++.-+.
T Consensus 168 ~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k~qh 217 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQH 217 (479)
T ss_pred hhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhh
Confidence 99999999999877764 44456688899999999999998 7888777433
No 137
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.34 E-value=2.1e-06 Score=66.00 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=65.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhc--CCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccC----CeeEEE
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFFSS--VGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLL----GIPIIV 89 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f~~--~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~----g~~l~v 89 (370)
+||+|+|||...|.++|.+.+.. .|...-+.++.|-.++...|||||-|.+++.|....+ .+|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999999986 3677888888999999999999999999999999995 8988875 334455
Q ss_pred eccc
Q psy2983 90 QPTQ 93 (370)
Q Consensus 90 ~~~~ 93 (370)
.++.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5443
No 138
>KOG4209|consensus
Probab=98.33 E-value=1.6e-06 Score=77.73 Aligned_cols=82 Identities=23% Similarity=0.425 Sum_probs=76.3
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
.+...+||+|+.+.++.+++...|+.||.+..+.+..|...|.++|||||+|.+.+.+..|+. |+|..+.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 445689999999999999999999999999999999998888999999999999999999999 9999999999999886
Q ss_pred ecC
Q psy2983 192 TDR 194 (370)
Q Consensus 192 ~~~ 194 (370)
.-+
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 655
No 139
>KOG0116|consensus
Probab=98.33 E-value=1.3e-06 Score=84.31 Aligned_cols=82 Identities=23% Similarity=0.443 Sum_probs=69.9
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecC
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~ 194 (370)
..|||.|||.+++..+|+++|..||.|+...|......++...||||+|.+.+.+..|+.+ +-..++++++.|+--.+.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4599999999999999999999999999988876543455558999999999999999994 688899999999876554
Q ss_pred CCC
Q psy2983 195 NES 197 (370)
Q Consensus 195 ~~~ 197 (370)
...
T Consensus 368 ~~g 370 (419)
T KOG0116|consen 368 FRG 370 (419)
T ss_pred ccc
Confidence 443
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.31 E-value=3.4e-06 Score=64.79 Aligned_cols=78 Identities=23% Similarity=0.353 Sum_probs=67.2
Q ss_pred ceEEEecCCCCCCHHHHHhcccCC--CceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeC----CeeEEE
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPF--GKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA----GRPMKV 188 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~--G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~----g~~l~V 188 (370)
++|.|+|||...|.++|.+++... |....+.++.|-.++.+.|||||.|.+++.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 579999999999999999988653 67777888999889999999999999999999999999998875 455666
Q ss_pred EEee
Q psy2983 189 GTVT 192 (370)
Q Consensus 189 ~~~~ 192 (370)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6654
No 141
>KOG0533|consensus
Probab=98.31 E-value=1.5e-06 Score=77.78 Aligned_cols=81 Identities=22% Similarity=0.334 Sum_probs=71.1
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
+..+.+|+|.|||+.++++||+++|+.||.+..+-+-.++ .|++.|.|-|.|...++|..|++ ++|..+.|+++.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445779999999999999999999999988888776665 58899999999999999999996 999999999998876
Q ss_pred ccc
Q psy2983 92 TQA 94 (370)
Q Consensus 92 ~~~ 94 (370)
...
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 543
No 142
>KOG4454|consensus
Probab=98.31 E-value=2.6e-07 Score=79.54 Aligned_cols=108 Identities=11% Similarity=0.181 Sum_probs=86.8
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
.++|||+|+...++++-|.++|-+.|+|.++.|..++ .++.+ ||||.|.++-+..-|++.+||..+.++.+++++-..
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 4789999999999999999999999999999998885 67767 999999999999999999999999999999977432
Q ss_pred CCCCcCCCCCCCCHHHHHHhcccCCceeeeee
Q psy2983 194 RNESVGGGPSNLDTDEMERAGVDLGATGRLQL 225 (370)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l 225 (370)
.. ...+...++.+.+...++..+++.....
T Consensus 87 ~s--hapld~r~~~ei~~~v~s~a~p~~~~R~ 116 (267)
T KOG4454|consen 87 NS--HAPLDERVTEEILYEVFSQAGPIEGVRI 116 (267)
T ss_pred CC--cchhhhhcchhhheeeecccCCCCCccc
Confidence 21 1123444555666667777776654444
No 143
>KOG4660|consensus
Probab=98.24 E-value=7e-07 Score=86.65 Aligned_cols=70 Identities=31% Similarity=0.481 Sum_probs=64.2
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 187 (370)
...+|+|-|||..+++++|+.+|+.||+|+.++. +-...|..||+|.|..+|++|+++|++.++.|+.++
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4578999999999999999999999999999765 444589999999999999999999999999999888
No 144
>KOG0151|consensus
Probab=98.09 E-value=5.3e-06 Score=82.53 Aligned_cols=85 Identities=14% Similarity=0.258 Sum_probs=73.2
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeC---CCCCeecEEEEEecCCCChHHHhh-ccCCccCCe
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCN---KTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGI 85 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~---~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~ 85 (370)
+......+.|||+||++.++++.|...|..||+|.+++|+.-+ ...+.+.++||.|-+..+|++|++ |+|+.+.+.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 3445566889999999999999999999999999999997633 224556799999999999999996 999999999
Q ss_pred eEEEecccc
Q psy2983 86 PIIVQPTQA 94 (370)
Q Consensus 86 ~l~v~~~~~ 94 (370)
.+++.|.++
T Consensus 248 e~K~gWgk~ 256 (877)
T KOG0151|consen 248 EMKLGWGKA 256 (877)
T ss_pred eeeeccccc
Confidence 999988854
No 145
>KOG2193|consensus
Probab=98.02 E-value=3.8e-07 Score=85.44 Aligned_cols=149 Identities=21% Similarity=0.399 Sum_probs=118.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCC-ccCCeeEEEeccc
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFFSSVG-KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQ-KLLGIPIIVQPTQ 93 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f~~~G-~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~-~i~g~~l~v~~~~ 93 (370)
..+|++||.+.++..+|..+|...- +...-.++. .|||||.+.+...|.+|++ ++|. .+.|.++.+..+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4689999999999999999998751 122222232 4899999999999999997 7665 6889999887776
Q ss_pred ccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEe-ecCCCCCcccEEEEEECCHHHHHHH
Q psy2983 94 AEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLM-VDPDTGRSKGYGFITFHSADDAKKA 172 (370)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~-~~~~~g~~~g~afV~f~~~~~a~~A 172 (370)
....+. +++-|.|+|+....+.+..++..||.+..|... .+++ .-..-|+|...+.+..|
T Consensus 75 ~kkqrs---------------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~a 135 (584)
T KOG2193|consen 75 PKKQRS---------------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQA 135 (584)
T ss_pred hHHHHh---------------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHH
Confidence 544332 468899999999999999999999999988653 2222 22334788899999999
Q ss_pred HHHhCCceeCCeeEEEEEe
Q psy2983 173 QEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 173 ~~~l~g~~i~g~~l~V~~~ 191 (370)
+..|+|..+.+..+++.+-
T Consensus 136 i~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 136 IHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HHhhcchHhhhhhhhcccC
Confidence 9999999999999999875
No 146
>KOG0106|consensus
Probab=98.01 E-value=4.2e-06 Score=73.39 Aligned_cols=70 Identities=33% Similarity=0.655 Sum_probs=64.6
Q ss_pred eEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 116 ~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
++||++||+.+.+.++..+|..||.+..+.+. .||+||+|.+..+|..|+..||+.++.|-.+.|.++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 58999999999999999999999999988775 56899999999999999999999999998888888764
No 147
>KOG0151|consensus
Probab=98.01 E-value=1.4e-05 Score=79.55 Aligned_cols=80 Identities=28% Similarity=0.522 Sum_probs=71.6
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCC---CCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD---TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
...|||+||++.++++.|...|..||+|..++++.... ....+.+|||-|-+..+|.+|+..|+|..+.+..+++.|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 36799999999999999999999999999999986542 245567999999999999999999999999999999999
Q ss_pred eec
Q psy2983 191 VTD 193 (370)
Q Consensus 191 ~~~ 193 (370)
++.
T Consensus 254 gk~ 256 (877)
T KOG0151|consen 254 GKA 256 (877)
T ss_pred ccc
Confidence 754
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.82 E-value=7.4e-05 Score=54.96 Aligned_cols=69 Identities=23% Similarity=0.383 Sum_probs=47.2
Q ss_pred ceEEEecCCCCCCHHH----HHhcccCCC-ceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q psy2983 115 MRLYIGSLHFNITEDM----LRGIFEPFG-KIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~----l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~ 189 (370)
..|+|.|||.+.+... |++++..+| .|..| . .|-|++.|.+.+.|.+|.+.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3699999999888654 566666776 66554 1 4579999999999999999999999999999999
Q ss_pred Eeec
Q psy2983 190 TVTD 193 (370)
Q Consensus 190 ~~~~ 193 (370)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8644
No 149
>KOG1995|consensus
Probab=97.77 E-value=2.3e-05 Score=72.63 Aligned_cols=84 Identities=23% Similarity=0.360 Sum_probs=76.8
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceee--------EEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCC
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDN--------IQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG 183 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~--------v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g 183 (370)
....++||.++|..+++++|.++|.++|.|.. |++.+|++|+..||-|.|.|.+...|+.|+.-+++..+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 34468999999999999999999999998863 7889999999999999999999999999999999999999
Q ss_pred eeEEEEEeecCC
Q psy2983 184 RPMKVGTVTDRN 195 (370)
Q Consensus 184 ~~l~V~~~~~~~ 195 (370)
..|+|..+..+.
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998876655
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.72 E-value=4.7e-05 Score=55.99 Aligned_cols=68 Identities=21% Similarity=0.331 Sum_probs=45.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHh----hcC-CCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEe
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFF----SSV-GKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQ 90 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f----~~~-G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~ 90 (370)
..|+|.|||.+.+...|+.-+ ..| |+|.+|. .+-|+|.|.+.+.|.+|.+ ++|..+.|+.|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 359999999998887776544 456 4677762 3679999999999999996 99999999999999
Q ss_pred cccc
Q psy2983 91 PTQA 94 (370)
Q Consensus 91 ~~~~ 94 (370)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8753
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.56 E-value=0.00016 Score=56.84 Aligned_cols=69 Identities=19% Similarity=0.397 Sum_probs=43.5
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCc-----eeCCeeEEEE
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGF-----ELAGRPMKVG 189 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-----~i~g~~l~V~ 189 (370)
..|++.+++..++.++|++.|+.||.|..|.+... -.-|+|.|.+++.|+.|+..+... .+.+..+++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 35889999999999999999999999999988654 237999999999999999977544 4445555443
No 152
>KOG1995|consensus
Probab=97.49 E-value=0.0001 Score=68.37 Aligned_cols=84 Identities=24% Similarity=0.426 Sum_probs=74.7
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCee--------EEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCc
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVR--------DVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQK 81 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~--------~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~ 81 (370)
......-+|||-+||..+++++|.++|.++|.|. .|++-+|+.|++.|+-|.|.|.+...|..|+. +++..
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 3356678899999999999999999999999774 47788899999999999999999999999997 99999
Q ss_pred cCCeeEEEecccc
Q psy2983 82 LLGIPIIVQPTQA 94 (370)
Q Consensus 82 i~g~~l~v~~~~~ 94 (370)
+.|..|+|..+..
T Consensus 141 f~gn~ikvs~a~~ 153 (351)
T KOG1995|consen 141 FCGNTIKVSLAER 153 (351)
T ss_pred ccCCCchhhhhhh
Confidence 9999998876653
No 153
>KOG4676|consensus
Probab=97.36 E-value=0.0002 Score=66.92 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=64.5
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCC---CCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT---GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
..|.|.||.+.++.++++.+|...|.|..+.++..... ....-.|||.|.+..++..|.. |.+..|-|+.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 47999999999999999999999999999999875432 2344589999999999998876 8888888998888664
No 154
>KOG4307|consensus
Probab=97.35 E-value=0.00064 Score=68.00 Aligned_cols=77 Identities=22% Similarity=0.436 Sum_probs=66.8
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCcee-eEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKID-NIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~-~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
+++.|-+.|+|++++-+||.++|..|-.+- +|.+.++ +.|...|-|.|-|++.++|.+|...|+++.|.++.+++..
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 345799999999999999999999997554 3454444 6899999999999999999999999999999999998754
No 155
>KOG4849|consensus
Probab=97.30 E-value=0.00018 Score=66.30 Aligned_cols=78 Identities=22% Similarity=0.385 Sum_probs=69.6
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCC--ceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFG--KIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G--~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
..++|||||-+.+|+++|.+.+..-| .+..++++.+..+|.+||||+|...+..+..+.++.|..++|.|+.-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 35799999999999999999998877 5778889999889999999999999999999999999999999987666543
No 156
>KOG4210|consensus
Probab=97.29 E-value=0.00016 Score=67.13 Aligned_cols=82 Identities=29% Similarity=0.451 Sum_probs=73.0
Q ss_pred CCCeEE-EcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEeccc
Q psy2983 15 DARTIF-CMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 15 ~~r~v~-V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~~ 93 (370)
.+.++| |++|+..+++++|+..|..+|.|..+++..++.++..+|+|||+|.+..++..++......+.++++.+....
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 445566 9999999999999999999999999999999999999999999999999999999557778899999988776
Q ss_pred ccc
Q psy2983 94 AEK 96 (370)
Q Consensus 94 ~~~ 96 (370)
...
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 543
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.23 E-value=0.0005 Score=63.16 Aligned_cols=113 Identities=14% Similarity=0.267 Sum_probs=75.0
Q ss_pred CeEEEcCCCCCCcHHHH------HHHhhcCCCeeEEEEeeeCCCCC-eecE--EEEEecCCCChHHHhh-ccCCccCCee
Q psy2983 17 RTIFCMQLSQRIRTRDL------EEFFSSVGKVRDVRLITCNKTRR-FKGI--AYIEFKDPESVPLAMG-LNGQKLLGIP 86 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L------~~~f~~~G~v~~v~i~~d~~~~~-~kg~--afVeF~~~e~A~~Al~-l~g~~i~g~~ 86 (370)
.-|||-+||+.+-.+++ .++|.+||.|..|.+.+...+.. ..+. .||.|.+.|+|.+|++ .+|..++|+-
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45899999998876663 57999999999988765442222 2233 3999999999999995 9999999999
Q ss_pred EEEecccccccccCCCCCCCCCCCCCCCceEEEecCC---CCCCHHHHHhc
Q psy2983 87 IIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLH---FNITEDMLRGI 134 (370)
Q Consensus 87 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp---~~~t~e~l~~~ 134 (370)
|+..+....-=.. ......-..+.+.|+.--. ...+.++|...
T Consensus 195 lkatYGTTKYCts-----YLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~ 240 (480)
T COG5175 195 LKATYGTTKYCTS-----YLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNS 240 (480)
T ss_pred EeeecCchHHHHH-----HHcCCCCCCCCeeeecCCCcccccccHHHHhhh
Confidence 9887754321000 0001112334567765433 33566766544
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.22 E-value=0.001 Score=52.23 Aligned_cols=67 Identities=24% Similarity=0.350 Sum_probs=41.9
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh---cc---CCccCCeeEEEe
Q psy2983 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG---LN---GQKLLGIPIIVQ 90 (370)
Q Consensus 18 ~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~---l~---g~~i~g~~l~v~ 90 (370)
.|++.+++..++-++|++.|+.||.|.-|.+.+. -.-|||.|.++++|..|++ .. +..+.+..+.+.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 5889999999999999999999999999888653 2369999999999999995 22 445566665554
No 159
>KOG1996|consensus
Probab=97.22 E-value=0.00017 Score=64.92 Aligned_cols=41 Identities=32% Similarity=0.438 Sum_probs=34.5
Q ss_pred CCCCCCceEEeecCCCCCCCCCchhhHHhHHHHHHHHhhcCceeeE
Q psy2983 265 APPIATQCFLLANMFDPATETNPTWDVEIRDDVIEECNKHGVGAST 310 (370)
Q Consensus 265 ~~~~ps~vl~L~Nm~~~~~l~~d~~~~ei~eDv~~Ec~kyG~~~~~ 310 (370)
+...|++||+|.||+.+++ -.+|+.+++++||+|||.|...
T Consensus 276 Il~~ptkvlllrnmVg~ge-----vd~elede~keEceKyg~V~~v 316 (378)
T KOG1996|consen 276 ILKCPTKVLLLRNMVGAGE-----VDEELEDETKEECEKYGKVGNV 316 (378)
T ss_pred HHhcchHHHHhhhhcCccc-----ccHHHHHHHHHHHHhhcceeeE
Confidence 4567999999999999986 4567889999999999997543
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.21 E-value=0.00056 Score=46.56 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=43.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh
Q psy2983 16 ARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM 75 (370)
Q Consensus 16 ~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al 75 (370)
++.|-|.|.|++.. +++..+|..||+|.++.+. ....+.||.|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 36789999997765 4556699999999998774 23568999999999999986
No 161
>KOG2314|consensus
Probab=97.21 E-value=0.00081 Score=65.83 Aligned_cols=79 Identities=30% Similarity=0.412 Sum_probs=65.5
Q ss_pred CceEEEecCCCCCC------HHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeC-CeeE
Q psy2983 114 PMRLYIGSLHFNIT------EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA-GRPM 186 (370)
Q Consensus 114 ~~~l~V~nlp~~~t------~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~-g~~l 186 (370)
...|+|.|+|---. ..-|..+|+++|++..+.++.+. .|..+||.|++|.+..+|..|++.|||+.+. +++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 35799999985322 35678889999999999988886 5559999999999999999999999999887 7788
Q ss_pred EEEEeec
Q psy2983 187 KVGTVTD 193 (370)
Q Consensus 187 ~V~~~~~ 193 (370)
.|...++
T Consensus 137 ~v~~f~d 143 (698)
T KOG2314|consen 137 FVRLFKD 143 (698)
T ss_pred Eeehhhh
Confidence 8876544
No 162
>KOG3152|consensus
Probab=97.15 E-value=0.00018 Score=63.76 Aligned_cols=71 Identities=24% Similarity=0.413 Sum_probs=61.5
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCC--------CCcccE----EEEEECCHHHHHHHHHHhCCceeC
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT--------GRSKGY----GFITFHSADDAKKAQEQLNGFELA 182 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~--------g~~~g~----afV~f~~~~~a~~A~~~l~g~~i~ 182 (370)
-.||+++||+.+...-|+++|+.||.|-.|.+.....+ |.+.++ |.|+|.+...|.+....|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 46999999999999999999999999999988776554 333333 789999999999999999999999
Q ss_pred Cee
Q psy2983 183 GRP 185 (370)
Q Consensus 183 g~~ 185 (370)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 864
No 163
>KOG1855|consensus
Probab=96.94 E-value=0.0008 Score=63.81 Aligned_cols=75 Identities=23% Similarity=0.306 Sum_probs=61.6
Q ss_pred CCCCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeee---CCC---CC-------eecEEEEEecCCCCh
Q psy2983 5 YSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITC---NKT---RR-------FKGIAYIEFKDPESV 71 (370)
Q Consensus 5 ~~~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d---~~~---~~-------~kg~afVeF~~~e~A 71 (370)
+-++.+..+.++|+|.+-|||.+-.-+.|.++|..+|.|..|+|..- +.+ .. .+-+|+|||...+.|
T Consensus 220 Plp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A 299 (484)
T KOG1855|consen 220 PLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAA 299 (484)
T ss_pred CCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHH
Confidence 44566677789999999999999999999999999999999998653 111 11 256899999999999
Q ss_pred HHHhhccC
Q psy2983 72 PLAMGLNG 79 (370)
Q Consensus 72 ~~Al~l~g 79 (370)
.+|.++.+
T Consensus 300 ~KA~e~~~ 307 (484)
T KOG1855|consen 300 RKARELLN 307 (484)
T ss_pred HHHHHhhc
Confidence 99998553
No 164
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.88 E-value=0.0023 Score=58.95 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=61.6
Q ss_pred CceEEEecCCCCCCHHH------HHhcccCCCceeeEEEeecCCCC-CcccE--EEEEECCHHHHHHHHHHhCCceeCCe
Q psy2983 114 PMRLYIGSLHFNITEDM------LRGIFEPFGKIDNIQLMVDPDTG-RSKGY--GFITFHSADDAKKAQEQLNGFELAGR 184 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~------l~~~f~~~G~i~~v~~~~~~~~g-~~~g~--afV~f~~~~~a~~A~~~l~g~~i~g~ 184 (370)
.+-+||-+||+.+-.|+ =.++|.+||.|.+|.+-+...+. ...+. .|+.|.+.++|.+|+...+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35699999998887665 35789999999988775442111 11122 39999999999999999999999999
Q ss_pred eEEEEEee
Q psy2983 185 PMKVGTVT 192 (370)
Q Consensus 185 ~l~V~~~~ 192 (370)
.|+..+..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99998864
No 165
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.87 E-value=0.0017 Score=50.23 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=53.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEE-EeeeC------CCCCeecEEEEEecCCCChHHHhhccCCccCCee
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVR-LITCN------KTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIP 86 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~-i~~d~------~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~ 86 (370)
...+-|.|-+.|+. ....|.+.|++||.|.+.. +.++. .......+..|.|.++.+|.+||..||..+.|.-
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 35577999999988 6778889999999987764 11110 0112356899999999999999999999999865
Q ss_pred EE-Eecc
Q psy2983 87 II-VQPT 92 (370)
Q Consensus 87 l~-v~~~ 92 (370)
+- |.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 43 5544
No 166
>KOG0115|consensus
Probab=96.82 E-value=0.0026 Score=56.58 Aligned_cols=99 Identities=27% Similarity=0.414 Sum_probs=80.4
Q ss_pred hHHHh-hccCCccCCeeEEEecccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeec
Q psy2983 71 VPLAM-GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVD 149 (370)
Q Consensus 71 A~~Al-~l~g~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~ 149 (370)
|..|- +|++....|+.+.|.++.. ..|||.||...++.+.+.+.|+.||+|....+..|
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~--------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD 66 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH--------------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD 66 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc--------------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec
Confidence 44455 5999999999999988753 35999999999999999999999999998777777
Q ss_pred CCCCCcccEEEEEECCHHHHHHHHHHhCCce----eCCeeEEEEE
Q psy2983 150 PDTGRSKGYGFITFHSADDAKKAQEQLNGFE----LAGRPMKVGT 190 (370)
Q Consensus 150 ~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~----i~g~~l~V~~ 190 (370)
+.++..+-++|+|...-.|.+|...+..-- ..+++.-|..
T Consensus 67 -~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 67 -DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred -ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 589999999999999999999999774322 3345554443
No 167
>KOG0129|consensus
Probab=96.74 E-value=0.0044 Score=60.37 Aligned_cols=70 Identities=21% Similarity=0.236 Sum_probs=63.0
Q ss_pred CCCcccCCCCeEEEcCCCCCCcHHHHHHHhh-cCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhc
Q psy2983 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFS-SVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGL 77 (370)
Q Consensus 8 ~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~-~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l 77 (370)
+..+...+.||||||+||..++.++|..+|+ -||-|.-+-|=.|++-+-.||-|-|.|.+..+-.+||+.
T Consensus 362 d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 362 DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4456667889999999999999999999999 599999999988988788899999999999999999963
No 168
>KOG3152|consensus
Probab=96.64 E-value=0.0012 Score=58.69 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=60.5
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCC--------CCeec----EEEEEecCCCChHHHhh-ccC
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKT--------RRFKG----IAYIEFKDPESVPLAMG-LNG 79 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~--------~~~kg----~afVeF~~~e~A~~Al~-l~g 79 (370)
.+..-.||+++||+.+....|+++|+.||.|-.|.+-....+ |..++ -|.|||.+...|..+-+ ||+
T Consensus 71 krk~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn 150 (278)
T KOG3152|consen 71 KRKTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNN 150 (278)
T ss_pred hccceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCC
Confidence 345578999999999999999999999999999988665443 22222 26799999999998885 999
Q ss_pred CccCCee
Q psy2983 80 QKLLGIP 86 (370)
Q Consensus 80 ~~i~g~~ 86 (370)
..|.|+.
T Consensus 151 ~~Iggkk 157 (278)
T KOG3152|consen 151 TPIGGKK 157 (278)
T ss_pred CccCCCC
Confidence 9999873
No 169
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.63 E-value=0.0035 Score=42.60 Aligned_cols=52 Identities=23% Similarity=0.417 Sum_probs=41.2
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHH
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~ 173 (370)
+.|-|.|.+.+..+. +...|..||.|..+.+.. .....++.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 467889998777655 455888999999987752 2448999999999999985
No 170
>KOG1996|consensus
Probab=96.59 E-value=0.0051 Score=55.73 Aligned_cols=65 Identities=26% Similarity=0.373 Sum_probs=54.0
Q ss_pred HHHHHhcccCCCceeeEEEeecCCCCCccc-EEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 128 EDMLRGIFEPFGKIDNIQLMVDPDTGRSKG-YGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 128 ~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g-~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
++++++-+++||.|..|-++.++....... --||+|...++|.+|+-.|||..|+||.++.++.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 468899999999999998887753322222 37999999999999999999999999999988854
No 171
>KOG2314|consensus
Probab=96.55 E-value=0.0055 Score=60.22 Aligned_cols=76 Identities=20% Similarity=0.264 Sum_probs=60.3
Q ss_pred CCCCeEEEcCCCC--CCcHHHH----HHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccC-Ce
Q psy2983 14 RDARTIFCMQLSQ--RIRTRDL----EEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLL-GI 85 (370)
Q Consensus 14 ~~~r~v~V~nLp~--~~te~~L----~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~-g~ 85 (370)
--...|.|.|+|. ....+.| ..+|+++|++..+.+..+..+| ++||.|+||.+..+|..|++ +||..+. ++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 4557799999983 3333443 4578899999999998888766 89999999999999999995 9999885 44
Q ss_pred eEEEe
Q psy2983 86 PIIVQ 90 (370)
Q Consensus 86 ~l~v~ 90 (370)
...|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 56554
No 172
>KOG4849|consensus
Probab=96.44 E-value=0.0016 Score=60.17 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=64.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEe
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFFSSVG--KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQ 90 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f~~~G--~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~ 90 (370)
--+||+||-..+|.+||.+.+...| .+.++++..++.+|.+||||+|-..+.....+.++ |....|+|+.-.|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 4489999999999999999999877 47788888899999999999999999998888888 88888999865553
No 173
>KOG1855|consensus
Probab=96.44 E-value=0.0039 Score=59.31 Aligned_cols=68 Identities=24% Similarity=0.365 Sum_probs=57.1
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeec---CCC--CCc--------ccEEEEEECCHHHHHHHHHHhCC
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVD---PDT--GRS--------KGYGFITFHSADDAKKAQEQLNG 178 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~---~~~--g~~--------~g~afV~f~~~~~a~~A~~~l~g 178 (370)
-+.++|.+.|||.+-.-+.|.++|..+|.|..|+|.+. +.+ |.. +-+|+|+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 35689999999999999999999999999999999876 332 222 44699999999999999997754
Q ss_pred c
Q psy2983 179 F 179 (370)
Q Consensus 179 ~ 179 (370)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 174
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.34 E-value=0.009 Score=49.16 Aligned_cols=57 Identities=23% Similarity=0.427 Sum_probs=45.5
Q ss_pred HHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEeccccc
Q psy2983 31 RDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQAE 95 (370)
Q Consensus 31 ~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~~~~ 95 (370)
.+|.+.|..||.+.=++++. +.-+|.|.+-+.|-+|++++|..+.|+.|.|+...+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 46778888999988777764 3489999999999999999999999999999876543
No 175
>KOG0112|consensus
Probab=96.07 E-value=0.0029 Score=65.23 Aligned_cols=110 Identities=17% Similarity=0.303 Sum_probs=89.2
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecC
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~ 194 (370)
++||+|||+..+++.+|+..|..+|.|..|.+-... -+.-..||||.|.+...+..|...+.+..|....+++.+....
T Consensus 373 rTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~k 451 (975)
T KOG0112|consen 373 RTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPK 451 (975)
T ss_pred hhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccccccc
Confidence 579999999999999999999999999999886553 3344459999999999999999999999888666666665332
Q ss_pred -----CCCcCCCCCCCCHHHHHHhcccCCceeeeee
Q psy2983 195 -----NESVGGGPSNLDTDEMERAGVDLGATGRLQL 225 (370)
Q Consensus 195 -----~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l 225 (370)
...++++........+.+.|..||.+..+.+
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy 487 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY 487 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeec
Confidence 1225566677778889999999999977555
No 176
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.05 E-value=0.013 Score=43.23 Aligned_cols=54 Identities=15% Similarity=0.321 Sum_probs=40.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG 76 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~ 76 (370)
...+..||+ +|..+...||.++|++||.|.- ..+.| .-|||.....+.|..++.
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~V-sWi~d-------TSAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYV-SWIND-------TSAFVALHNRDQAKVVMN 60 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEEE-EEECT-------TEEEEEECCCHHHHHHHH
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEEE-EEEcC-------CcEEEEeecHHHHHHHHH
Confidence 344566666 9999999999999999999874 44443 359999999999999885
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.04 E-value=0.024 Score=46.70 Aligned_cols=57 Identities=26% Similarity=0.455 Sum_probs=46.1
Q ss_pred HHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecC
Q psy2983 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 129 e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~ 194 (370)
.+|.+.|..||.+.=+++..+ .-+|+|.+.++|.+|+. ++|..+.|+.|+|+...+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 378888899999888887633 47999999999999999 9999999999999886543
No 178
>KOG2416|consensus
Probab=96.00 E-value=0.0047 Score=61.03 Aligned_cols=77 Identities=13% Similarity=0.229 Sum_probs=62.9
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhh-cCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCcc---CCe
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFS-SVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKL---LGI 85 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~-~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i---~g~ 85 (370)
...+.++.|||.||-..+|.-+|++++. .+|.|.+.||= +-|..|||.|.+.++|.+... |+|..| +++
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD------kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD------KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH------HhhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 3677899999999999999999999999 57788887652 236689999999999999995 999887 456
Q ss_pred eEEEeccc
Q psy2983 86 PIIVQPTQ 93 (370)
Q Consensus 86 ~l~v~~~~ 93 (370)
.|.+.+..
T Consensus 513 ~L~adf~~ 520 (718)
T KOG2416|consen 513 HLIADFVR 520 (718)
T ss_pred eeEeeecc
Confidence 66665544
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.93 E-value=0.023 Score=43.99 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=49.9
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEE-EeecC------CCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeE-
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQ-LMVDP------DTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM- 186 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~-~~~~~------~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l- 186 (370)
.-|.|-+.|+. ....+.+.|++||.|.+.. +.++. ........-.++|.++.+|.+|+. -||..+.|..|
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 45888899888 5577888899999987764 11100 011224578999999999999999 79999998654
Q ss_pred EEEEe
Q psy2983 187 KVGTV 191 (370)
Q Consensus 187 ~V~~~ 191 (370)
-|.++
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 35554
No 180
>KOG2193|consensus
Probab=95.77 E-value=0.006 Score=57.91 Aligned_cols=105 Identities=25% Similarity=0.365 Sum_probs=79.4
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCc-eeCCeeEEEEEeec
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGF-ELAGRPMKVGTVTD 193 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~i~g~~l~V~~~~~ 193 (370)
+++|++||.+.++..++..+|...-.-.+-.++. ..||+||.+.+...|.+|++.++|+ ++.|.++.+....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3689999999999999999997542111112221 2579999999999999999999985 68899999988755
Q ss_pred CCC-----CcCCCCCCCCHHHHHHhcccCCceeeeee
Q psy2983 194 RNE-----SVGGGPSNLDTDEMERAGVDLGATGRLQL 225 (370)
Q Consensus 194 ~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~~~l 225 (370)
+.. ...+++....-+-+..+...+|...++..
T Consensus 76 kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eq 112 (584)
T KOG2193|consen 76 KKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQ 112 (584)
T ss_pred HHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhh
Confidence 433 35567777777778888888888776544
No 181
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.55 E-value=0.083 Score=41.71 Aligned_cols=77 Identities=19% Similarity=0.200 Sum_probs=54.3
Q ss_pred CCCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccC
Q psy2983 6 SDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVG-KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLL 83 (370)
Q Consensus 6 ~~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G-~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~ 83 (370)
+....+..+....+.+...|.-++.++|..+.+.+- .|..+++++|.. ..+=.+++.|++.++|..... .||..++
T Consensus 3 ~~~~~~~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 3 SESDLPDERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CccCCCCCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 444455556666566655555566677776666653 488889988754 234468999999999999995 9999875
Q ss_pred C
Q psy2983 84 G 84 (370)
Q Consensus 84 g 84 (370)
-
T Consensus 81 s 81 (110)
T PF07576_consen 81 S 81 (110)
T ss_pred C
Confidence 4
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.39 E-value=0.093 Score=38.83 Aligned_cols=55 Identities=22% Similarity=0.402 Sum_probs=42.2
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCC
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNG 178 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 178 (370)
+..+|+ +|..+...||.++|++||.| .|..+-|. -|||...+.+.|..++..+.-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 455666 99999999999999999998 56666553 699999999999999998753
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.05 E-value=0.087 Score=36.88 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=45.0
Q ss_pred CceEEEecCCCCCCHHHHHhcccCC---CceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHh
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPF---GKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~---G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 176 (370)
+.+|+|.|+. +++.++|+.+|..| .....|..+-|. -|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4679999984 58889999999988 134578888764 4889999999999999864
No 184
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.81 E-value=0.092 Score=45.25 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=50.8
Q ss_pred CceEEEecCCCCCCHHHHHhcccC-CCce---eeEEEeecCCCCC--cccEEEEEECCHHHHHHHHHHhCCceeCC----
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEP-FGKI---DNIQLMVDPDTGR--SKGYGFITFHSADDAKKAQEQLNGFELAG---- 183 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~-~G~i---~~v~~~~~~~~g~--~~g~afV~f~~~~~a~~A~~~l~g~~i~g---- 183 (370)
..+|.|++||+.+|++++.+.+.+ ++.- ..+.-......-. ...-|||.|.+.+++..-...++|+.|.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 468999999999999999998888 6655 3333222221111 22349999999999999999999988753
Q ss_pred -eeEEEEEee
Q psy2983 184 -RPMKVGTVT 192 (370)
Q Consensus 184 -~~l~V~~~~ 192 (370)
....|.++.
T Consensus 87 ~~~~~VE~Ap 96 (176)
T PF03467_consen 87 EYPAVVEFAP 96 (176)
T ss_dssp EEEEEEEE-S
T ss_pred CcceeEEEcc
Confidence 244455543
No 185
>KOG2202|consensus
Probab=94.80 E-value=0.011 Score=52.66 Aligned_cols=62 Identities=24% Similarity=0.391 Sum_probs=50.5
Q ss_pred HHHHhccc-CCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 129 DMLRGIFE-PFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 129 e~l~~~f~-~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
+++...|+ +||.|+++.+-.+. .-.-.|-++|.|...++|++|++.|||.-+.|++|...++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444444 89999998766543 3445788999999999999999999999999999999875
No 186
>KOG0804|consensus
Probab=94.47 E-value=0.3 Score=47.20 Aligned_cols=68 Identities=16% Similarity=0.344 Sum_probs=58.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCC
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVG-KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLG 84 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G-~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g 84 (370)
.++.|+|-.+|..++..||..|...+- .|.+++++||..-+ +=.++|.|++.++|..+.+ +||..|+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn--rymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN--RYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc--eEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 389999999999999999999999764 48999999965422 3358999999999999995 99998864
No 187
>KOG2416|consensus
Probab=94.22 E-value=0.046 Score=54.26 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=60.6
Q ss_pred CCCceEEEecCCCCCCHHHHHhccc-CCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeC---CeeEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFE-PFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA---GRPMK 187 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~-~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~---g~~l~ 187 (370)
...+.|||.||-..+|.-+|+.++. ..|.|...+|-+- +..|||.|.+.++|.....+|||..+- .+.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 3457899999999999999999998 5667777643222 557999999999999999999998763 56777
Q ss_pred EEEee
Q psy2983 188 VGTVT 192 (370)
Q Consensus 188 V~~~~ 192 (370)
+.|..
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 77753
No 188
>KOG2202|consensus
Probab=93.89 E-value=0.015 Score=51.89 Aligned_cols=62 Identities=19% Similarity=0.339 Sum_probs=47.9
Q ss_pred HHHHHHhh-cCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEeccc
Q psy2983 31 RDLEEFFS-SVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 31 ~~L~~~f~-~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~ 93 (370)
++|...|+ +||.|..+.+..+ ..-.-.|-+||.|...|+|++|++ |++.-+.|++|....+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444444 7899999865443 334557889999999999999996 99999999999876654
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.41 E-value=0.056 Score=46.61 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=43.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhc-CCCe---eEEEEeeeCCC--CCeecEEEEEecCCCChHHHhh-ccCCccCC
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSS-VGKV---RDVRLITCNKT--RRFKGIAYIEFKDPESVPLAMG-LNGQKLLG 84 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~-~G~v---~~v~i~~d~~~--~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g 84 (370)
....+|-|++||+++|++++.+.+.. ++.- ..+.-...... ...-.-|||.|.+.+++..... ++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 45568999999999999999997776 5544 23321111111 1123469999999999888885 88887743
No 190
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.29 E-value=0.059 Score=40.58 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=48.2
Q ss_pred EEEEecCCCChHHHhh--ccCCccCCeeEEEecccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhccc
Q psy2983 61 AYIEFKDPESVPLAMG--LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFE 136 (370)
Q Consensus 61 afVeF~~~e~A~~Al~--l~g~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~ 136 (370)
|+|.|.+++-|++.+. -+...+++..+.|+.+........ .........+++|.|+|||..+.+++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~----k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQ----KFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCce----EEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999996 444566777776654432221111 11111223457899999999999999998754
No 191
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.83 E-value=0.32 Score=34.03 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=42.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcC----CCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh
Q psy2983 16 ARTIFCMQLSQRIRTRDLEEFFSSV----GKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG 76 (370)
Q Consensus 16 ~r~v~V~nLp~~~te~~L~~~f~~~----G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~ 76 (370)
...|+|+|+ .+++.++|+.+|..| + ...|..+-|. -|=|.|.+.+.|.+||.
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALV 60 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHH
Confidence 357999999 458999999999998 4 4467777764 38899999999999984
No 192
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.73 E-value=1.3 Score=35.00 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=51.3
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCC-ceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCC
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFG-KIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG 183 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g 183 (370)
..+.+...|.-++.++|..+.+++- .|..+++++|. ..++=.+++.|.+.++|..-....||+.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4455555666667777877766664 67788998874 3456679999999999999999999998864
No 193
>KOG0115|consensus
Probab=91.97 E-value=0.13 Score=46.07 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=51.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG 76 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~ 76 (370)
..|||.||+..++.+.+.+.|+.||+|..-.++-|.. ++..+-++|+|...-.|.+|+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~r 90 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKPNARKAAR 90 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcchhHHHHHH
Confidence 5689999999999999999999999998766655543 6777889999999999999996
No 194
>KOG2135|consensus
Probab=91.46 E-value=0.19 Score=48.78 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=63.6
Q ss_pred cCCCCeEEEcCCCCCC-cHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRI-RTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~-te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~ 91 (370)
..+.+.+-+.-.|... +-.+|...|.+||.|..|.+-.. .-.|.|.|.+..+|-.|...++..|+|+.|+|.|
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFW 442 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEE
Confidence 3455666777777766 56889999999999999987443 2459999999999999999999999999999999
Q ss_pred cccc
Q psy2983 92 TQAE 95 (370)
Q Consensus 92 ~~~~ 95 (370)
..+.
T Consensus 443 hnps 446 (526)
T KOG2135|consen 443 HNPS 446 (526)
T ss_pred ecCC
Confidence 8753
No 195
>KOG4285|consensus
Probab=91.39 E-value=0.76 Score=42.23 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=52.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeE
Q psy2983 16 ARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPI 87 (370)
Q Consensus 16 ~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l 87 (370)
..=|-|-++|+. ...-|...|++||.|.+.... ....+-+|.|.+.-+|++||..+|..|.|..+
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vm 261 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVM 261 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceE
Confidence 445888899876 456778899999999887553 22468999999999999999999999988643
No 196
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.36 E-value=0.52 Score=40.88 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=45.8
Q ss_pred CHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhC--CceeCCeeEEEEEeec
Q psy2983 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLN--GFELAGRPMKVGTVTD 193 (370)
Q Consensus 127 t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~--g~~i~g~~l~V~~~~~ 193 (370)
..+.|+++|..++.+..+..++. -+-..|.|.+.+.|.+|...|+ +..+.|..+++.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999999888777643 3458999999999999999999 9999999999988743
No 197
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.50 E-value=0.52 Score=38.56 Aligned_cols=74 Identities=22% Similarity=0.187 Sum_probs=52.5
Q ss_pred cCCCCeEEEcCCCCCC----cHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEE
Q psy2983 13 ERDARTIFCMQLSQRI----RTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPII 88 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~----te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~ 88 (370)
+.+-.||.|+=|..++ +...+...++.||+|.+|.+.- +.-|.|.|++..+|.+|+..-+....|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 3456778887665554 3445556677899999997643 3469999999999999996444456677666
Q ss_pred Eeccc
Q psy2983 89 VQPTQ 93 (370)
Q Consensus 89 v~~~~ 93 (370)
..|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 65543
No 198
>KOG2253|consensus
Probab=89.02 E-value=0.29 Score=49.48 Aligned_cols=70 Identities=11% Similarity=0.283 Sum_probs=61.2
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
.+..++||+|+...+..+-++.++..+|.|.++.... |||++|....-+.+|+..++...++|+.+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4457899999999999999999999999987765432 899999999999999999999999988877654
No 199
>KOG2068|consensus
Probab=88.64 E-value=0.14 Score=47.62 Aligned_cols=76 Identities=13% Similarity=0.225 Sum_probs=57.4
Q ss_pred CeEEEcCCCCCCcHHHHH---HHhhcCCCeeEEEEeeeCC--CCC-eecEEEEEecCCCChHHHhh-ccCCccCCeeEEE
Q psy2983 17 RTIFCMQLSQRIRTRDLE---EFFSSVGKVRDVRLITCNK--TRR-FKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV 89 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~---~~f~~~G~v~~v~i~~d~~--~~~-~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v 89 (370)
+-+||-+|+.....+.+. ++|.+||.|..|.+.++.. ++. ..--+||.|...|+|..|+. .+|....|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 558889998777555553 4899999999998887662 111 11238999999999999996 9999999998665
Q ss_pred ecc
Q psy2983 90 QPT 92 (370)
Q Consensus 90 ~~~ 92 (370)
...
T Consensus 158 ~~g 160 (327)
T KOG2068|consen 158 SLG 160 (327)
T ss_pred hhC
Confidence 443
No 200
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.59 E-value=0.93 Score=37.15 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=52.4
Q ss_pred CceEEEecCCCCCC-HH---HHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q psy2983 114 PMRLYIGSLHFNIT-ED---MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189 (370)
Q Consensus 114 ~~~l~V~nlp~~~t-~e---~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~ 189 (370)
-.+|.|+=|..++. .+ .+..-++.||+|.++.+. | +--|.|.|.+..+|-+|+.+++. ..-|..+.+.
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 35788887776653 23 445556889999998774 2 33699999999999999998876 5567778877
Q ss_pred Ee
Q psy2983 190 TV 191 (370)
Q Consensus 190 ~~ 191 (370)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 64
No 201
>KOG4574|consensus
Probab=88.48 E-value=0.22 Score=51.67 Aligned_cols=71 Identities=21% Similarity=0.350 Sum_probs=60.3
Q ss_pred EEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeC--CeeEEEEEeec
Q psy2983 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA--GRPMKVGTVTD 193 (370)
Q Consensus 117 l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~--g~~l~V~~~~~ 193 (370)
.++.|.+-..+...|..+|+.||.|.+.+.+++ -..|.|+|...++|..|+.+|+|.++. |-+.+|.+++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 455555667788899999999999999998877 348999999999999999999998865 77888888764
No 202
>KOG2591|consensus
Probab=87.83 E-value=1 Score=44.78 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=55.2
Q ss_pred ceEEEecCCCCCCHHHHHhcccC--CCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCC--ceeCCeeEEEEE
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEP--FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNG--FELAGRPMKVGT 190 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~--~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~i~g~~l~V~~ 190 (370)
+.+.++-||..+-.|+++.+|.. +-.+.+|.+-.+. -=||+|++..+|+.|...|.. ++|.|++|..++
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 45778999999999999999975 5677788876553 259999999999999998865 567787766544
No 203
>KOG2068|consensus
Probab=87.73 E-value=0.26 Score=45.92 Aligned_cols=79 Identities=25% Similarity=0.487 Sum_probs=60.4
Q ss_pred CceEEEecCCCCCCHHHHH---hcccCCCceeeEEEeecCC----CCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeE
Q psy2983 114 PMRLYIGSLHFNITEDMLR---GIFEPFGKIDNIQLMVDPD----TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~---~~f~~~G~i~~v~~~~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l 186 (370)
.+.+||-+|+..+..+.+. +.|.+||.|.++...++.- .+.+. -++|+|...++|..|+...+|....|+.+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3568899999887665543 5677888999988877651 12222 28999999999999999999999999998
Q ss_pred EEEEeec
Q psy2983 187 KVGTVTD 193 (370)
Q Consensus 187 ~V~~~~~ 193 (370)
+..+...
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 8776543
No 204
>KOG2135|consensus
Probab=85.74 E-value=0.44 Score=46.33 Aligned_cols=72 Identities=26% Similarity=0.283 Sum_probs=57.3
Q ss_pred EEEecCCCCC-CHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecCC
Q psy2983 117 LYIGSLHFNI-TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRN 195 (370)
Q Consensus 117 l~V~nlp~~~-t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~~ 195 (370)
|-+.-.|+.. +.++|...|.+||.|..|.+-.. .--|.|+|.+..+|-.|.. .++..|.+|.|+|.|-++..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 3444445554 56899999999999999987544 2268999999999988877 79999999999999977643
No 205
>KOG0804|consensus
Probab=83.52 E-value=3.7 Score=39.97 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=58.6
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCC-ceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCC
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFG-KIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG 183 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g 183 (370)
+..|+|-.+|..++-.||..++..|- .|..+++++|. -.++=..++.|.+.++|....+.+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 57899999999999999999998775 68899999874 2334469999999999999999999998874
No 206
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=82.19 E-value=5.3 Score=28.36 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=44.4
Q ss_pred CCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q psy2983 124 FNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188 (370)
Q Consensus 124 ~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V 188 (370)
..++-++++..+..|+-. ++..|+ + | =||.|.+..+|.++....+|..+.+..|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~---~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD---RIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc---eEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 456789999999999743 344553 2 3 389999999999999999999998877654
No 207
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=81.73 E-value=3.2 Score=34.36 Aligned_cols=121 Identities=14% Similarity=0.095 Sum_probs=79.4
Q ss_pred CCCeEEEcCCC--CCCcHHHHHHHhhc-CCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEec
Q psy2983 15 DARTIFCMQLS--QRIRTRDLEEFFSS-VGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQP 91 (370)
Q Consensus 15 ~~r~v~V~nLp--~~~te~~L~~~f~~-~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~ 91 (370)
..+...|+.+. ...+-..|.+.+.. .+....+.+..- ..++..+.|.+.+++..++......+.|..+.++.
T Consensus 14 ~~~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~ 88 (153)
T PF14111_consen 14 RWQLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQR 88 (153)
T ss_pred hcCeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhh
Confidence 33445555553 34667777777765 344334444331 24789999999999999998888888888888876
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEecCCCC-CCHHHHHhcccCCCceeeEEEe
Q psy2983 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFN-ITEDMLRGIFEPFGKIDNIQLM 147 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~e~l~~~f~~~G~i~~v~~~ 147 (370)
-.+...... ......+-=|.|.|||.. .+++-++.+.+.+|.+..+...
T Consensus 89 W~~~~~~~~-------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 89 WSPDFNPSE-------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hcccccccc-------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 553221111 000111234778899977 6788899999999999877654
No 208
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=81.58 E-value=4.1 Score=35.34 Aligned_cols=60 Identities=25% Similarity=0.264 Sum_probs=43.1
Q ss_pred cHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-cc--CCccCCeeEEEecccc
Q psy2983 29 RTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LN--GQKLLGIPIIVQPTQA 94 (370)
Q Consensus 29 te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~--g~~i~g~~l~v~~~~~ 94 (370)
..+.|+++|..++.+..+..++. -+-..|.|.+.++|..|.. ++ +..+.|..+++.+.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999999888766542 2458999999999999996 88 8999999999987743
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=80.16 E-value=5.6 Score=28.76 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=34.5
Q ss_pred CCCCHHHHHhcccCCC-----ceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 124 FNITEDMLRGIFEPFG-----KIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 124 ~~~t~e~l~~~f~~~G-----~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
..++..+|..++...+ .|-.|++..+ |+||+-... .|..++..|++..+.|++++|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4567777777776653 3556777633 899998654 788999999999999999999864
No 210
>KOG2318|consensus
Probab=80.08 E-value=5.7 Score=39.91 Aligned_cols=129 Identities=16% Similarity=0.306 Sum_probs=75.5
Q ss_pred ccCCCCeEEEcCCCC-CCcHHHHHHHhhcC----CCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCee
Q psy2983 12 EERDARTIFCMQLSQ-RIRTRDLEEFFSSV----GKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIP 86 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~-~~te~~L~~~f~~~----G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~ 86 (370)
....+++|-|-||.. .+...+|.-+|+.| |.|.+|.|..... |+. .|..-.++|-+
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF-Gke------------------RM~eEeV~GP~ 230 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF-GKE------------------RMKEEEVHGPP 230 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh-hHH------------------HhhhhcccCCh
Confidence 356789999999994 57899999999876 5899998865432 111 02222333433
Q ss_pred EEEecccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCH
Q psy2983 87 IIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSA 166 (370)
Q Consensus 87 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~ 166 (370)
+.+.......... . ......++-.++.+..|+ +..++.+ ||.|+|.+.
T Consensus 231 ~el~~~~e~~~~s----------------~-----sD~ee~~~~~~~kLR~Yq-~~rLkYY----------yAVvecDsi 278 (650)
T KOG2318|consen 231 KELFKPVEEYKES----------------E-----SDDEEEEDVDREKLRQYQ-LNRLKYY----------YAVVECDSI 278 (650)
T ss_pred hhhccccccCccc----------------c-----cchhhhhhHHHHHHHHHH-hhhheeE----------EEEEEecCc
Confidence 3221111100000 0 011111112233333333 2333333 899999999
Q ss_pred HHHHHHHHHhCCceeC--CeeEEEEEe
Q psy2983 167 DDAKKAQEQLNGFELA--GRPMKVGTV 191 (370)
Q Consensus 167 ~~a~~A~~~l~g~~i~--g~~l~V~~~ 191 (370)
++|......++|.++. +..+-+++.
T Consensus 279 ~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 279 ETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hHHHHHHHhcCcceeccccceeeeeec
Confidence 9999999999999998 456666664
No 211
>KOG2591|consensus
Probab=77.88 E-value=4.2 Score=40.62 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=52.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhc--CCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh---ccCCccCCeeEE
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSS--VGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG---LNGQKLLGIPII 88 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~--~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~---l~g~~i~g~~l~ 88 (370)
..-+.|.++-||..+-+++++.+|.. |-++.++.+-.+. -=||.|.+..||+.|.. -.-..|.|++|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34456889999999999999999986 7778888876543 26999999999999985 222345666553
No 212
>KOG4574|consensus
Probab=74.25 E-value=1.9 Score=45.12 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=60.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCcc--CCeeEEEec
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKL--LGIPIIVQP 91 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i--~g~~l~v~~ 91 (370)
-..+.++-|.+...+-.-|..+|.+||.|.+.|.+++- ..|.|+|.+.+.|..|++ ++|+.+ .|-+.+|..
T Consensus 297 lqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ 370 (1007)
T KOG4574|consen 297 LQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSF 370 (1007)
T ss_pred CcchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEe
Confidence 44556777788888999999999999999999998864 479999999999999995 888865 577777765
Q ss_pred cc
Q psy2983 92 TQ 93 (370)
Q Consensus 92 ~~ 93 (370)
++
T Consensus 371 ak 372 (1007)
T KOG4574|consen 371 AK 372 (1007)
T ss_pred cc
Confidence 54
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=73.84 E-value=13 Score=26.80 Aligned_cols=57 Identities=16% Similarity=0.367 Sum_probs=34.3
Q ss_pred CCCcHHHHHHHhhcCC-----CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 26 QRIRTRDLEEFFSSVG-----KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 26 ~~~te~~L~~~f~~~G-----~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
..++..+|..++...+ .|-.|.+.. .|+||+-... .|..+++ +++..+.|+++.|+.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 4578899999998764 356676643 4899988765 6777775 999999999999875
No 214
>KOG4285|consensus
Probab=73.60 E-value=5.9 Score=36.62 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=51.7
Q ss_pred eEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCe-eEEEEEeecC
Q psy2983 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGR-PMKVGTVTDR 194 (370)
Q Consensus 116 ~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~-~l~V~~~~~~ 194 (370)
=|.|-++|+.-. .-|..+|++||.|.+... +....+-+|.|.+..+|.+||. -+|..|+|. -|=|..+.++
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 366667776544 456778999999976433 2334588999999999999999 699999875 4455555554
No 215
>KOG2253|consensus
Probab=73.50 E-value=2 Score=43.66 Aligned_cols=73 Identities=14% Similarity=0.058 Sum_probs=59.6
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPII 88 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~ 88 (370)
.+.-.+.-+|||+|+...+..+-+...+..+|.|.+..... |+|.+|..+..+..|+. ++...++|..+.
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 34456778899999999999999999999999988764422 89999999999999995 777778787766
Q ss_pred Eec
Q psy2983 89 VQP 91 (370)
Q Consensus 89 v~~ 91 (370)
+..
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 543
No 216
>KOG4483|consensus
Probab=72.36 E-value=7.5 Score=37.31 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=50.5
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccC
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGK-VRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNG 79 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~-v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g 79 (370)
..+..-.+.|-|.++|.....+||...|+.|+. --+|.++-|. .||..|.+...|..||.+..
T Consensus 385 l~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 385 LRESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred CCcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccC
Confidence 334456789999999999999999999999864 3456665543 69999999999999997733
No 217
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=70.08 E-value=14 Score=26.28 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=41.0
Q ss_pred CCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEE
Q psy2983 26 QRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV 89 (370)
Q Consensus 26 ~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v 89 (370)
..++.++++..|..|+-. .| ..++ + | =||.|.+.++|++|.. .+|..+.+..+.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~-~I--~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD-RI--RDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc-eE--EecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 356889999999999643 23 2332 2 2 5799999999999995 8888888777654
No 218
>PLN02401 diacylglycerol o-acyltransferase
Probab=63.21 E-value=0.12 Score=50.46 Aligned_cols=27 Identities=30% Similarity=0.440 Sum_probs=22.7
Q ss_pred EEEEEEEEEEEEEEEeeeeeeeEeecc
Q psy2983 310 TVCFIYSVIFLKLWSYVQVNLWCRHAR 336 (370)
Q Consensus 310 ~~~~~y~~~~~k~~~~~~~~~~~~~~~ 336 (370)
+.|+.++++++|++||.+||+|||...
T Consensus 159 ~l~~~~~i~~lK~~SY~~tN~d~r~~~ 185 (446)
T PLN02401 159 TLMLLACIVWLKLVSYAHTNYDMRALA 185 (446)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHh
Confidence 555667789999999999999999743
No 219
>KOG4410|consensus
Probab=58.74 E-value=32 Score=31.63 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=37.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCCh
Q psy2983 16 ARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71 (370)
Q Consensus 16 ~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A 71 (370)
..-||++|||.++...||+..+.+-|.+- ..+... -..|-||++|-+...+
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswk----g~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWK----GHFGKCFLHFGNRKGV 380 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEeee----cCCcceeEecCCccCC
Confidence 35599999999999999999999876432 233332 2356799999776543
No 220
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=57.73 E-value=17 Score=28.90 Aligned_cols=50 Identities=14% Similarity=0.271 Sum_probs=28.3
Q ss_pred eEEEcCCCCC---------CcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCC
Q psy2983 18 TIFCMQLSQR---------IRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPES 70 (370)
Q Consensus 18 ~v~V~nLp~~---------~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~ 70 (370)
++.|-|+|.. .+.++|.+.|..|.+++ ++.+.+.. -+.|++.|+|.+.-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChH
Confidence 4566777543 35689999999998875 55666653 457999999976543
No 221
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=56.19 E-value=12 Score=26.70 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=44.4
Q ss_pred HHHHhcccCCC-ceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecC
Q psy2983 129 DMLRGIFEPFG-KIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 129 e~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~ 194 (370)
++|.+.|...| ++..++-+..++++.....-+|+.....+... .|+=+.++|+++.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46777888888 78888888777777777788888865543332 34556678899998875443
No 222
>PLN03242 diacylglycerol o-acyltransferase; Provisional
Probab=52.98 E-value=0.12 Score=50.06 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=23.2
Q ss_pred EEEEEEEEEEEEEEEeeeeeeeEeeccc
Q psy2983 310 TVCFIYSVIFLKLWSYVQVNLWCRHARK 337 (370)
Q Consensus 310 ~~~~~y~~~~~k~~~~~~~~~~~~~~~~ 337 (370)
++++.++++++|.+||+++|+|+|...+
T Consensus 134 ~~~~~~~i~~mK~~Sy~~~N~~~r~~~~ 161 (410)
T PLN03242 134 VLMLIATITWLKLVSYAHTNADYRASKK 161 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 4455678899999999999999997643
No 223
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=52.15 E-value=72 Score=23.38 Aligned_cols=55 Identities=11% Similarity=0.183 Sum_probs=41.7
Q ss_pred eEEEcCCCCCCcHHHHHHHhhc-CC-CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh
Q psy2983 18 TIFCMQLSQRIRTRDLEEFFSS-VG-KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM 75 (370)
Q Consensus 18 ~v~V~nLp~~~te~~L~~~f~~-~G-~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al 75 (370)
.-|+-..+.+++..+|++.++. || +|.+|..+.-+. ...=|||.+...+.|...-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHH
Confidence 4677778899999999999998 66 477777665542 2234999999988887654
No 224
>KOG4213|consensus
Probab=48.50 E-value=12 Score=32.08 Aligned_cols=81 Identities=20% Similarity=0.218 Sum_probs=50.0
Q ss_pred CCCCCCCccc------CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCC-CCCeecEEEEEecCCCChHHHhh
Q psy2983 4 AYSDDLSPEE------RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNK-TRRFKGIAYIEFKDPESVPLAMG 76 (370)
Q Consensus 4 ~~~~~~~~~~------~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~-~~~~kg~afVeF~~~e~A~~Al~ 76 (370)
.+|.++++.+ ...|++|.. |.+...++|.++-+ |.+..|.+-+-.. ....+|-.||.|.+.+.|.++++
T Consensus 93 ~~skplpEvt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 93 SPSKPLPEVTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CcCCCCccccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 3455555443 345778877 33334444444444 6788876543221 12568999999999999999997
Q ss_pred ccCCccCCeeEE
Q psy2983 77 LNGQKLLGIPII 88 (370)
Q Consensus 77 l~g~~i~g~~l~ 88 (370)
-++....-..|.
T Consensus 169 ~~e~~~~e~el~ 180 (205)
T KOG4213|consen 169 THEEKGAETELK 180 (205)
T ss_pred hhhhhccchHHH
Confidence 665555444443
No 225
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=48.07 E-value=14 Score=29.52 Aligned_cols=33 Identities=6% Similarity=0.051 Sum_probs=28.9
Q ss_pred CchhhHHhHHHHHHHHhhcCceeeEEEEEEEEE
Q psy2983 286 NPTWDVEIRDDVIEECNKHGVGASTVCFIYSVI 318 (370)
Q Consensus 286 ~d~~~~ei~eDv~~Ec~kyG~~~~~~~~~y~~~ 318 (370)
+|+.+..|.+++|+.+..+|+-..-.|--++++
T Consensus 77 d~~~~~~V~e~lr~~a~~~ggdi~~l~~n~viI 109 (124)
T COG2450 77 DDDLFERVIEELRDTAEEVGGDIAKLGDNVVII 109 (124)
T ss_pred ChhHHHHHHHHHHHHHHHhCchhhhhcCCEEEE
Confidence 899999999999999999999888888775544
No 226
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=47.70 E-value=88 Score=23.33 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=42.5
Q ss_pred eEEEcCCCCCCcHHHHHHHhhc-CC-CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh
Q psy2983 18 TIFCMQLSQRIRTRDLEEFFSS-VG-KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM 75 (370)
Q Consensus 18 ~v~V~nLp~~~te~~L~~~f~~-~G-~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al 75 (370)
.-|+--.+..++..+|++.++. || +|.+|....-+. ...=|||.+...++|....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHH
Confidence 4666677899999999999998 66 478887766542 2234999999999988765
No 227
>KOG4483|consensus
Probab=47.49 E-value=47 Score=32.12 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=47.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCc-eeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHH
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGK-IDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~-i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 175 (370)
..-++.|-|.++|.....+||...|+.|+. --.|+.+-|. .||-.|.+...|..|+..
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 345678999999999999999999999963 3356666553 799999999999999984
No 228
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=45.71 E-value=22 Score=32.86 Aligned_cols=164 Identities=15% Similarity=0.193 Sum_probs=96.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCC-------CCCeecEEEEEecCCCChHHHhh-----cc--C
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNK-------TRRFKGIAYIEFKDPESVPLAMG-----LN--G 79 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~-------~~~~kg~afVeF~~~e~A~~Al~-----l~--g 79 (370)
=..|.|...|+..+++--.+..-|-+||+|++|.++.+.. .........+-|-+.+.+-.... |. .
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999999999999987661 11233568899999998776652 21 1
Q ss_pred CccCCeeEEEecccccc---cccCCCCCCC----------CCCCCCCCceEEEecCCCCC-CHHHHHhcc---cCCC---
Q psy2983 80 QKLLGIPIIVQPTQAEK---NRAGNTLPNL----------QPRGTGGPMRLYIGSLHFNI-TEDMLRGIF---EPFG--- 139 (370)
Q Consensus 80 ~~i~g~~l~v~~~~~~~---~~~~~~~~~~----------~~~~~~~~~~l~V~nlp~~~-t~e~l~~~f---~~~G--- 139 (370)
..++-..|.+....-.. .......... .-......+.|.|.=- ..+ .++-+.+.+ ..-+
T Consensus 93 ~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~R 171 (309)
T PF10567_consen 93 TKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKR 171 (309)
T ss_pred HhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCce
Confidence 23445555554433100 0000000000 0011222355666432 333 333333332 2223
Q ss_pred -ceeeEEEeecCC--CCCcccEEEEEECCHHHHHHHHHHhCC
Q psy2983 140 -KIDNIQLMVDPD--TGRSKGYGFITFHSADDAKKAQEQLNG 178 (370)
Q Consensus 140 -~i~~v~~~~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g 178 (370)
.+++|.++.-.+ ..-++.||.+.|-+..-|...+..|..
T Consensus 172 YVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 172 YVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred EEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 356677764322 234667999999999999999887764
No 229
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=45.09 E-value=27 Score=24.89 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=43.3
Q ss_pred HHHHhcccCCC-ceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecC
Q psy2983 129 DMLRGIFEPFG-KIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 129 e~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~ 194 (370)
++|.+.|...| .|.++.-+..+.++.....-||+.....+... .++=..++++.++|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 46777777777 67787777766566777788888876655222 34455677888888775443
No 230
>KOG4410|consensus
Probab=44.81 E-value=58 Score=30.04 Aligned_cols=47 Identities=13% Similarity=0.113 Sum_probs=34.7
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCH
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSA 166 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~ 166 (370)
.-++++|||.++.-.+|+..+.+.|-+- ..+. -..+.|-||+.|-+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~is----wkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP-MSIS----WKGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc-eeEe----eecCCcceeEecCCc
Confidence 4599999999999999999998876431 2221 233477899999654
No 231
>KOG4019|consensus
Probab=42.84 E-value=19 Score=30.94 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=51.8
Q ss_pred ceEEEecCCCCCC-----HHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCe-eEEE
Q psy2983 115 MRLYIGSLHFNIT-----EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGR-PMKV 188 (370)
Q Consensus 115 ~~l~V~nlp~~~t-----~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~-~l~V 188 (370)
..+.+.+++..+- ......+|.+|.+....++++. .+..-|.|.+++.|..|...+++..|.|. .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4567777775542 2345566666666555555533 45677899999999999999999999988 6766
Q ss_pred EEeecC
Q psy2983 189 GTVTDR 194 (370)
Q Consensus 189 ~~~~~~ 194 (370)
-++.+.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 665543
No 232
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=41.92 E-value=1.1e+02 Score=21.83 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=44.4
Q ss_pred HHHHHHhhcCC-CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEecccc
Q psy2983 31 RDLEEFFSSVG-KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQA 94 (370)
Q Consensus 31 ~~L~~~f~~~G-~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~~~ 94 (370)
++|.+-|...| ++..+.-+..+.++.....-||+.....+-... ++=..+.|+++.|.+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~I--l~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEI--LNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcce--EeehhhCCeeEEEecCcc
Confidence 46788888888 588888787777666667788888776554443 344567788888877643
No 233
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=41.25 E-value=7.6 Score=37.33 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=52.2
Q ss_pred CCCCeEEEcCCCCCCcHH--------HHHHHhhc--CCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh
Q psy2983 14 RDARTIFCMQLSQRIRTR--------DLEEFFSS--VGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM 75 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~--------~L~~~f~~--~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al 75 (370)
...|.+|+.+.+..-+.+ ++..+|.. .+++..+...++.....++|..|++|+..+.+++++
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 345788999988665554 89999998 678888888888777788999999999999999998
No 234
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=40.19 E-value=1.2e+02 Score=21.57 Aligned_cols=62 Identities=15% Similarity=0.265 Sum_probs=44.9
Q ss_pred HHHHHHhhcCC-CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEecccc
Q psy2983 31 RDLEEFFSSVG-KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQA 94 (370)
Q Consensus 31 ~~L~~~f~~~G-~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~~~ 94 (370)
++|.+-|...| +|..|.-+..+.++.....-||+.....+...++ +=..+.|..+.|.++..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~--~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY--KIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee--ehHhhCCeEEEEecCCC
Confidence 57888888877 5888877777766666778889988887744443 33456788888877653
No 235
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=37.51 E-value=17 Score=27.34 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=21.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhh
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFS 38 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~ 38 (370)
-..|+|.|.|||....+++|++.++
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 4578999999999999999987654
No 236
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=37.44 E-value=25 Score=26.54 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=21.8
Q ss_pred CCCCCCCchhhHHhHHHHHHHHhhcCc
Q psy2983 280 DPATETNPTWDVEIRDDVIEECNKHGV 306 (370)
Q Consensus 280 ~~~~l~~d~~~~ei~eDv~~Ec~kyG~ 306 (370)
......++++.++|.+-+.+.|.+||.
T Consensus 63 ~~~~~~~~~~l~~~~~Gi~~~~~~~g~ 89 (96)
T PF00586_consen 63 GLPNPESPEELKEIVKGIAEACREFGI 89 (96)
T ss_dssp EESTTSBHHHHHHHHHHHHHHHHHHT-
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 334446778899999999999999996
No 237
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=36.04 E-value=1.4e+02 Score=29.12 Aligned_cols=42 Identities=24% Similarity=0.464 Sum_probs=31.9
Q ss_pred CcccCCCCeEEEcCCCC-CCcHHHHHHHhhcC----CCeeEEEEeee
Q psy2983 10 SPEERDARTIFCMQLSQ-RIRTRDLEEFFSSV----GKVRDVRLITC 51 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~-~~te~~L~~~f~~~----G~v~~v~i~~d 51 (370)
++.-.++.+|-|-||.. .+...+|.-.|+.| |++..|.|...
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 34456778899999984 47888999888875 67888887654
No 238
>KOG2891|consensus
Probab=35.42 E-value=30 Score=31.64 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=27.8
Q ss_pred CCeEEEcCCCCC------------CcHHHHHHHhhcCCCeeEEEEe
Q psy2983 16 ARTIFCMQLSQR------------IRTRDLEEFFSSVGKVRDVRLI 49 (370)
Q Consensus 16 ~r~v~V~nLp~~------------~te~~L~~~f~~~G~v~~v~i~ 49 (370)
.-|||+-+||-. -+++-|+..|+.||.|+.|.|.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 357999999854 3578899999999999998874
No 239
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=33.58 E-value=66 Score=29.89 Aligned_cols=79 Identities=18% Similarity=0.256 Sum_probs=58.9
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCC-------CCCcccEEEEEECCHHHHHHH----HHHhCC--ce
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD-------TGRSKGYGFITFHSADDAKKA----QEQLNG--FE 180 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~-------~g~~~g~afV~f~~~~~a~~A----~~~l~g--~~ 180 (370)
.+.|...|+..+++-..+...|-+||+|++|.++.+.. ..+...-..+.|-+.+.+..- ++.|.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 46688999999999999999999999999999997751 122334678999988877553 333433 34
Q ss_pred eCCeeEEEEEee
Q psy2983 181 LAGRPMKVGTVT 192 (370)
Q Consensus 181 i~g~~l~V~~~~ 192 (370)
+....|++.+..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 667788888764
No 240
>PRK08230 tartrate dehydratase subunit alpha; Validated
Probab=30.41 E-value=79 Score=29.60 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=41.9
Q ss_pred CCchhhHHhHHHHHHHHhhcCceeeEEEEEEEEEEEEEEEe--------eeeeeeEeeccc
Q psy2983 285 TNPTWDVEIRDDVIEECNKHGVGASTVCFIYSVIFLKLWSY--------VQVNLWCRHARK 337 (370)
Q Consensus 285 ~~d~~~~ei~eDv~~Ec~kyG~~~~~~~~~y~~~~~k~~~~--------~~~~~~~~~~~~ 337 (370)
..+..+.++++++.+++.+.|.|.+-.-+-++++.+|.-.+ +.||+-|--+|+
T Consensus 218 n~~p~~a~lE~eLle~iN~lGIGp~GlGG~tTaL~V~Ie~~p~H~AslPVaVn~~C~a~R~ 278 (299)
T PRK08230 218 NPNPRAAELEKRLEEGLNRIGLGPQGLTGNSSVMGVNIESAARHPSTIGVAVSTGCWAHRR 278 (299)
T ss_pred CCChhHHHHHHHHHHHHhhcCcCCCcCCCceEEEEEEeeecCccccCCceEEEcCchhhcC
Confidence 45578999999999999999999998888888888888544 567776644433
No 241
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=29.92 E-value=17 Score=31.59 Aligned_cols=37 Identities=14% Similarity=-0.023 Sum_probs=1.0
Q ss_pred hhHHhHHHHHHHHhhcCceeeEEEEEEEEEEEEEEEe
Q psy2983 289 WDVEIRDDVIEECNKHGVGASTVCFIYSVIFLKLWSY 325 (370)
Q Consensus 289 ~~~ei~eDv~~Ec~kyG~~~~~~~~~y~~~~~k~~~~ 325 (370)
++..+..=|-.-.+.|||+..++|.+..+++-|++..
T Consensus 21 ~~~~l~~tv~~~L~~yGWyil~~~I~ly~l~qkl~~~ 57 (190)
T PF06936_consen 21 DLSFLQSTVGSFLSSYGWYILFGCILLYLLWQKLSPS 57 (190)
T ss_dssp -----------------------------------HH
T ss_pred hHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556677899999999999999999998664
No 242
>PF00522 VPR: VPR/VPX protein; InterPro: IPR000012 Human immunodeficiency virus (HIV) is the human retrovirus associated with AIDS (acquired immune deficiency syndrome), and SIV its simian counterpart. Three main groups of primate lentivirus are known, designated Human immunodeficiency virus 1 (HIV-1), Human immunodeficiency virus 2 (HIV-2)/Simian immunodeficiency virus - mac (SIVMAC)/Simian immunodeficiency virus - sm (SIVSM) and Simian immunodeficiency virus - agm (SIVAGM). Simian immunodeficiency virus - mnd (SIVMND) has been suggested to represent a fourth distinct group []. These groups are believed to have diverged from a common ancestor long before the spread of AIDS in humans. Genetic variation in HIV-1 and HIV-2 has been studied extensively, and the nucleotide sequences reported for several strains []. ORF analysis has revealed two open reading frames, yielding the so-called R- and X-ORF proteins, which show a high degree of sequence similarity. Vpx plays a role in nuclear translocation of the viral pre-integration complex (PIC) and is thus required for the virus to infect non-dividing cells. Vpr also plays a role in nuclear translocation of the (PIC) and may target specific host proteins for degradation by the 26S proteasome. It acts by associating with the cellular CUL4A-DDB1 E3 ligase complex through direct interaction with host VPRPB/DCAF-1. This would result in cell cycle arrest or apoptosis in infected cells, creating a favourable environment for maximizing viral expression and production by rendering the HIV-1 LTR transcription more active.; GO: 0019058 viral infectious cycle, 0042025 host cell nucleus; PDB: 1VPC_A 1X9V_B 1ESX_A 1CEU_A 1M8L_A 1DSJ_A 1BDE_A 1DSK_A 1FI0_A.
Probab=29.22 E-value=49 Score=25.36 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=17.2
Q ss_pred CCchhhHHhHHHHHHHHhhc
Q psy2983 285 TNPTWDVEIRDDVIEECNKH 304 (370)
Q Consensus 285 ~~d~~~~ei~eDv~~Ec~ky 304 (370)
-=++|..|+.+||++|+.|+
T Consensus 17 p~~eWl~~~Leelk~EAvrH 36 (96)
T PF00522_consen 17 PYNEWLLELLEELKEEAVRH 36 (96)
T ss_dssp CCCHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhcc
Confidence 44589999999999999983
No 243
>KOG2891|consensus
Probab=28.86 E-value=55 Score=29.99 Aligned_cols=38 Identities=29% Similarity=0.531 Sum_probs=30.0
Q ss_pred CCCCceEEEecCCCC------------CCHHHHHhcccCCCceeeEEEee
Q psy2983 111 TGGPMRLYIGSLHFN------------ITEDMLRGIFEPFGKIDNIQLMV 148 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~------------~t~e~l~~~f~~~G~i~~v~~~~ 148 (370)
...+.+||+.+||-. .+++-|+..|+.||.|..+.++.
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 345678999999843 35688999999999999887753
No 244
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=27.48 E-value=1.3e+02 Score=21.11 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=15.8
Q ss_pred HHHHHHhhcCCCeeEEEEe
Q psy2983 31 RDLEEFFSSVGKVRDVRLI 49 (370)
Q Consensus 31 ~~L~~~f~~~G~v~~v~i~ 49 (370)
.+|+++|+..|+|.-+-+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999876553
No 245
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=26.10 E-value=1.1e+02 Score=28.74 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=26.9
Q ss_pred ceEEeecCCCCCCCCCchhhHHhHHHHHHHHhhcCce
Q psy2983 271 QCFLLANMFDPATETNPTWDVEIRDDVIEECNKHGVG 307 (370)
Q Consensus 271 ~vl~L~Nm~~~~~l~~d~~~~ei~eDv~~Ec~kyG~~ 307 (370)
.+|+..|-+|-- .|++..+.++.+|++..++||+-
T Consensus 130 ~ivvflnK~Dmv--dd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 130 YIVVFLNKVDMV--DDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred EEEEEEeccccc--CcHHHHHHHHHHHHHHHHHcCCC
Confidence 567777765443 35778888899999999999984
No 246
>COG1951 TtdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]
Probab=25.73 E-value=1.1e+02 Score=28.55 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=33.0
Q ss_pred hhhHHhHHHHHHHHhhcCceeeEEEEEEEEEEEEEEEe
Q psy2983 288 TWDVEIRDDVIEECNKHGVGASTVCFIYSVIFLKLWSY 325 (370)
Q Consensus 288 ~~~~ei~eDv~~Ec~kyG~~~~~~~~~y~~~~~k~~~~ 325 (370)
+.+..+++++.++..+.|.|.+-.-+-|+++.+|.-.|
T Consensus 219 ~~~~~~eeelLe~iN~LGIG~~GlGG~tTaldV~V~~~ 256 (297)
T COG1951 219 EKNAKLEEELLEEINKLGIGPQGLGGKTTALDVKVERA 256 (297)
T ss_pred ccchhHHHHHHHHHHhhCcCcccCCCceEEEEEEEEec
Confidence 45666888888999999999999999999999999776
No 247
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=24.60 E-value=56 Score=20.03 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=11.2
Q ss_pred hHHHHHHHHhh-cCc
Q psy2983 293 IRDDVIEECNK-HGV 306 (370)
Q Consensus 293 i~eDv~~Ec~k-yG~ 306 (370)
-.+-|+.||++ ||.
T Consensus 9 ai~kvr~eckrrfgk 23 (40)
T PF13043_consen 9 AIQKVRAECKRRFGK 23 (40)
T ss_pred HHHHHHHHHHHHhch
Confidence 35679999995 986
No 248
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=24.12 E-value=73 Score=20.09 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=11.4
Q ss_pred hhhHHhHHHHHHHHhh
Q psy2983 288 TWDVEIRDDVIEECNK 303 (370)
Q Consensus 288 ~~~~ei~eDv~~Ec~k 303 (370)
.+..||.++|+.|.+|
T Consensus 7 ~~KqEIL~EvrkEl~K 22 (40)
T PF08776_consen 7 RLKQEILEEVRKELQK 22 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777787777765
No 249
>KOG2295|consensus
Probab=23.68 E-value=17 Score=36.50 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=54.5
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 187 (370)
+.+++.|++++++-.+|..+++.+--+..+-+..+.-.......++|.|.-.-....|+.+||+..+....+.
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~s 304 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLS 304 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccc
Confidence 4699999999999999999999986666655543322334555789999877777888888888766654443
No 250
>PF12274 DUF3615: Protein of unknown function (DUF3615); InterPro: IPR022059 This domain family is found in bacteria and eukaryotes, and is typically between 86 and 97 amino acids in length. There is a conserved FAE sequence motif. There is a single completely conserved residue F that may be functionally important.
Probab=23.05 E-value=95 Score=23.53 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=13.0
Q ss_pred EEEEEEEEeeeeeeeEeec
Q psy2983 317 VIFLKLWSYVQVNLWCRHA 335 (370)
Q Consensus 317 ~~~~k~~~~~~~~~~~~~~ 335 (370)
+..-.-|.|.|||+|+|..
T Consensus 23 ~~e~~~~~y~HvNF~A~~~ 41 (96)
T PF12274_consen 23 IFERGGWNYYHVNFTAKTK 41 (96)
T ss_pred eEeCCCcEEEeEEEEEEcC
Confidence 3333355599999999843
No 251
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.48 E-value=88 Score=29.37 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=27.7
Q ss_pred EEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecCCCC
Q psy2983 159 GFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNES 197 (370)
Q Consensus 159 afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~~~~ 197 (370)
|||.|.+..+|..|.+.+.... ++.+++..+.++.+-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI 37 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDI 37 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccc
Confidence 7999999999999999665544 355677776655443
No 252
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=21.66 E-value=1.5e+02 Score=21.90 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.5
Q ss_pred cccEEEEEECCHHHHHHHHHHhCCc
Q psy2983 155 SKGYGFITFHSADDAKKAQEQLNGF 179 (370)
Q Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~ 179 (370)
.+||-|||=.+..+...|++.+.+.
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 5999999999999999999877653
No 253
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.55 E-value=3.9e+02 Score=22.25 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=40.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhc---CCCeeEEEEeeeCCC---------CCeec-EEEEEecCCCC
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSS---VGKVRDVRLITCNKT---------RRFKG-IAYIEFKDPES 70 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~---~G~v~~v~i~~d~~~---------~~~kg-~afVeF~~~e~ 70 (370)
+...||+.-+...+++++.++..+. .+++.+|.+-+.+.. ...+. |-+|.|.+-..
T Consensus 86 d~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 86 DDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 4478999999999999999998886 456777777554432 12233 78888887654
No 254
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=21.12 E-value=69 Score=20.72 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=11.5
Q ss_pred HHHHHHHhhcCceee
Q psy2983 295 DDVIEECNKHGVGAS 309 (370)
Q Consensus 295 eDv~~Ec~kyG~~~~ 309 (370)
++++.+|.+||.-..
T Consensus 9 ~eL~~~L~~~G~~~g 23 (44)
T smart00540 9 AELRAELKQYGLPPG 23 (44)
T ss_pred HHHHHHHHHcCCCCC
Confidence 457799999997544
No 255
>KOG4365|consensus
Probab=20.77 E-value=29 Score=33.96 Aligned_cols=75 Identities=4% Similarity=-0.214 Sum_probs=57.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
.+-++..+|...+++++.-.|+.||-|..+.+.+....+..+-.+|++-.+. ++..++. +.-+.++|..+++..+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcC
Confidence 4467888999999999999999999999998888777777777889887665 4566663 6666667766665443
No 256
>PF05274 Baculo_E25: Occlusion-derived virus envelope protein E25; InterPro: IPR007938 This family consists of several nucleopolyhedrovirus occlusion-derived virus envelope E25 proteins. The N terminus of this protein is extremely hydrophobic, studies suggest that this defined hydrophobic domain is sufficient to direct the protein to induced membrane microvesicles within a baculovirus-infected cell nucleus and the viral envelope. In addition, movement of the protein into the nuclear envelope may initiate through cytoplasmic membranes, such as endoplasmic reticulum, and that transport into the nucleus may be mediated through the outer and inner nuclear membrane [].; GO: 0019031 viral envelope, 0042025 host cell nucleus
Probab=20.32 E-value=27 Score=29.45 Aligned_cols=13 Identities=46% Similarity=0.818 Sum_probs=11.4
Q ss_pred EEEEEEEeeeeee
Q psy2983 318 IFLKLWSYVQVNL 330 (370)
Q Consensus 318 ~~~k~~~~~~~~~ 330 (370)
+.||.|.|+|+|=
T Consensus 157 l~LkEw~YtqiNd 169 (182)
T PF05274_consen 157 LKLKEWGYTQIND 169 (182)
T ss_pred HHHHhcCceEEcc
Confidence 5799999999994
Done!