Query psy2983
Match_columns 370
No_of_seqs 341 out of 2822
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 22:32:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 8E-35 2.8E-39 259.1 16.8 174 8-194 7-181 (213)
2 1l3k_A Heterogeneous nuclear r 100.0 3.6E-34 1.2E-38 250.7 18.9 180 10-197 7-186 (196)
3 3md3_A Nuclear and cytoplasmic 100.0 1.6E-33 5.3E-38 239.6 18.2 164 17-192 1-165 (166)
4 1b7f_A Protein (SXL-lethal pro 100.0 1.9E-33 6.6E-38 239.9 18.1 164 15-191 2-168 (168)
5 1fxl_A Paraneoplastic encephal 100.0 3.2E-33 1.1E-37 238.0 18.9 164 15-191 1-167 (167)
6 2cjk_A Nuclear polyadenylated 100.0 3.8E-34 1.3E-38 244.1 12.3 166 14-194 1-166 (167)
7 3smz_A Protein raver-1, ribonu 100.0 8E-33 2.7E-37 256.6 21.1 208 13-246 19-244 (284)
8 2ghp_A U4/U6 snRNA-associated 100.0 2.9E-33 1E-37 260.6 17.7 217 10-249 35-275 (292)
9 2qfj_A FBP-interacting repress 100.0 2E-32 6.8E-37 243.3 17.8 183 13-197 25-208 (216)
10 3nmr_A Cugbp ELAV-like family 100.0 4.1E-32 1.4E-36 233.0 17.3 164 15-191 2-174 (175)
11 2g4b_A Splicing factor U2AF 65 100.0 3.7E-32 1.3E-36 232.9 15.8 159 14-191 2-171 (172)
12 2yh0_A Splicing factor U2AF 65 100.0 1.1E-31 3.9E-36 235.2 19.2 177 14-196 2-196 (198)
13 1fje_B Nucleolin RBD12, protei 100.0 2.5E-32 8.6E-37 234.9 10.3 167 11-194 8-174 (175)
14 3smz_A Protein raver-1, ribonu 100.0 3.8E-30 1.3E-34 238.6 20.5 172 14-196 93-266 (284)
15 3tyt_A Heterogeneous nuclear r 100.0 4.3E-30 1.5E-34 227.0 15.2 170 15-191 3-204 (205)
16 3pgw_A U1-A; protein-RNA compl 100.0 1.4E-29 4.9E-34 234.4 19.3 174 11-192 4-281 (282)
17 2ghp_A U4/U6 snRNA-associated 100.0 9.6E-30 3.3E-34 236.8 15.3 172 15-194 116-291 (292)
18 2adc_A Polypyrimidine tract-bi 100.0 2.5E-29 8.5E-34 226.1 17.1 174 11-194 29-228 (229)
19 1qm9_A Polypyrimidine tract-bi 100.0 1.6E-29 5.6E-34 221.8 13.9 170 15-194 2-197 (198)
20 3sde_A Paraspeckle component 1 100.0 1.4E-28 4.8E-33 225.5 16.4 160 10-195 16-180 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 4.5E-23 1.5E-27 174.4 13.6 151 45-197 2-153 (158)
22 4f25_A Polyadenylate-binding p 99.8 3.4E-21 1.1E-25 154.1 8.2 109 15-130 4-113 (115)
23 2i2y_A Fusion protein consists 99.8 7.6E-21 2.6E-25 159.3 9.2 135 55-195 10-149 (150)
24 4fxv_A ELAV-like protein 1; RN 99.8 1.2E-19 4.2E-24 141.0 11.1 81 113-193 18-98 (99)
25 4f02_A Polyadenylate-binding p 99.8 2.4E-19 8.3E-24 158.9 13.8 134 113-246 14-161 (213)
26 1fxl_A Paraneoplastic encephal 99.8 4.9E-19 1.7E-23 149.9 14.8 133 114-246 2-148 (167)
27 1b7f_A Protein (SXL-lethal pro 99.8 7.6E-19 2.6E-23 149.1 15.0 134 113-246 2-149 (168)
28 4fxv_A ELAV-like protein 1; RN 99.8 1.5E-19 5E-24 140.5 8.7 81 14-94 17-98 (99)
29 1l3k_A Heterogeneous nuclear r 99.8 2.7E-18 9.2E-23 149.5 15.0 136 111-247 10-165 (196)
30 3md3_A Nuclear and cytoplasmic 99.8 3.5E-18 1.2E-22 144.4 14.5 131 115-246 1-147 (166)
31 3s8s_A Histone-lysine N-methyl 99.8 2E-18 6.9E-23 136.7 12.0 82 112-193 4-85 (110)
32 2lxi_A RNA-binding protein 10; 99.8 2.5E-19 8.7E-24 137.0 4.5 82 16-97 1-85 (91)
33 3nmr_A Cugbp ELAV-like family 99.8 5.2E-18 1.8E-22 144.8 13.1 133 114-246 3-154 (175)
34 3s7r_A Heterogeneous nuclear r 99.8 2.4E-18 8.3E-23 130.2 9.8 83 10-92 5-87 (87)
35 2lxi_A RNA-binding protein 10; 99.8 4.6E-19 1.6E-23 135.5 5.8 82 115-196 2-85 (91)
36 3s8s_A Histone-lysine N-methyl 99.8 1.3E-18 4.6E-23 137.7 8.5 83 13-95 3-86 (110)
37 4f25_A Polyadenylate-binding p 99.8 2.6E-18 9E-23 137.2 10.2 82 113-196 4-85 (115)
38 2lkz_A RNA-binding protein 5; 99.8 1.4E-18 4.8E-23 133.7 7.7 80 114-193 9-94 (95)
39 2lkz_A RNA-binding protein 5; 99.8 1E-18 3.5E-23 134.5 6.6 83 12-94 5-94 (95)
40 3bs9_A Nucleolysin TIA-1 isofo 99.8 6.9E-18 2.4E-22 127.5 11.0 82 113-194 5-86 (87)
41 3md1_A Nuclear and cytoplasmic 99.7 9.9E-18 3.4E-22 125.5 11.7 81 115-195 2-82 (83)
42 2qfj_A FBP-interacting repress 99.7 7.2E-18 2.5E-22 149.1 12.4 133 114-246 28-185 (216)
43 2dnz_A Probable RNA-binding pr 99.7 1.1E-17 3.8E-22 128.6 11.9 86 112-197 3-88 (95)
44 2cq0_A Eukaryotic translation 99.7 2.1E-17 7E-22 129.2 13.6 87 111-197 12-98 (103)
45 2jrs_A RNA-binding protein 39; 99.7 3.7E-18 1.3E-22 134.8 9.3 91 5-95 15-106 (108)
46 1whw_A Hypothetical protein ri 99.7 1.2E-17 4.2E-22 129.4 12.1 87 112-198 6-92 (99)
47 2cq4_A RNA binding motif prote 99.7 1.9E-18 6.6E-23 137.7 7.0 93 7-99 16-108 (114)
48 1rk8_A CG8781-PA, CG8781-PA pr 99.7 9.4E-18 3.2E-22 142.7 11.6 134 63-196 11-154 (165)
49 1p27_B RNA-binding protein 8A; 99.7 3.6E-18 1.2E-22 134.2 8.4 89 7-95 14-103 (106)
50 2dgo_A Cytotoxic granule-assoc 99.7 1.6E-17 5.5E-22 132.5 12.2 91 8-98 7-98 (115)
51 2dnm_A SRP46 splicing factor; 99.7 8.4E-18 2.9E-22 131.4 10.3 87 10-96 7-94 (103)
52 2dgs_A DAZ-associated protein 99.7 5.7E-18 2E-22 131.4 9.1 86 12-97 6-91 (99)
53 2cqc_A Arginine/serine-rich sp 99.7 1.9E-17 6.7E-22 127.2 11.8 83 111-193 12-94 (95)
54 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.1E-17 3.7E-22 125.9 10.1 81 112-192 5-85 (85)
55 2e5h_A Zinc finger CCHC-type a 99.7 2.4E-17 8.1E-22 126.5 12.2 82 111-192 13-94 (94)
56 2x1f_A MRNA 3'-END-processing 99.7 1.4E-17 4.7E-22 128.5 10.9 83 114-196 2-84 (96)
57 2cjk_A Nuclear polyadenylated 99.7 5.1E-18 1.7E-22 143.9 9.3 132 114-247 3-148 (167)
58 2dgs_A DAZ-associated protein 99.7 2.5E-17 8.7E-22 127.7 12.4 85 112-197 8-92 (99)
59 2lea_A Serine/arginine-rich sp 99.7 1.7E-18 5.9E-23 142.3 6.0 124 60-197 6-130 (135)
60 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.7E-17 5.7E-22 129.4 11.3 87 112-198 10-96 (102)
61 2jrs_A RNA-binding protein 39; 99.7 1.4E-17 4.7E-22 131.5 10.8 88 108-195 20-107 (108)
62 2do4_A Squamous cell carcinoma 99.7 3.1E-17 1.1E-21 127.4 12.7 85 111-196 14-98 (100)
63 2la6_A RNA-binding protein FUS 99.7 1.8E-17 6.2E-22 128.6 11.0 83 110-192 9-99 (99)
64 3p5t_L Cleavage and polyadenyl 99.7 2.3E-18 7.8E-23 131.3 5.7 82 115-196 2-85 (90)
65 1x5u_A Splicing factor 3B subu 99.7 2.2E-17 7.7E-22 129.4 11.6 88 110-197 11-98 (105)
66 2dgo_A Cytotoxic granule-assoc 99.7 5.8E-17 2E-21 129.2 14.1 88 110-197 11-98 (115)
67 1whw_A Hypothetical protein ri 99.7 8.4E-18 2.9E-22 130.4 8.8 85 13-97 5-90 (99)
68 2cq0_A Eukaryotic translation 99.7 9.4E-18 3.2E-22 131.1 9.2 89 8-96 7-96 (103)
69 3mdf_A Peptidyl-prolyl CIS-tra 99.7 6.1E-18 2.1E-22 127.3 7.7 81 13-93 4-85 (85)
70 1x4h_A RNA-binding protein 28; 99.7 1.3E-17 4.6E-22 132.0 10.0 91 6-96 5-102 (111)
71 3tyt_A Heterogeneous nuclear r 99.7 2.2E-17 7.6E-22 145.4 12.4 129 113-246 3-183 (205)
72 2dng_A Eukaryotic translation 99.7 2E-17 6.7E-22 129.3 10.8 88 9-97 8-95 (103)
73 3bs9_A Nucleolysin TIA-1 isofo 99.7 6.7E-18 2.3E-22 127.6 7.8 81 14-94 4-85 (87)
74 2cqc_A Arginine/serine-rich sp 99.7 1.2E-17 4.1E-22 128.4 9.3 85 10-94 9-94 (95)
75 1p27_B RNA-binding protein 8A; 99.7 1.9E-17 6.6E-22 130.0 10.7 84 112-195 21-104 (106)
76 1x5u_A Splicing factor 3B subu 99.7 9.6E-18 3.3E-22 131.5 8.9 89 9-97 8-97 (105)
77 1s79_A Lupus LA protein; RRM, 99.7 3.3E-18 1.1E-22 133.8 6.1 82 13-95 8-89 (103)
78 2cpz_A CUG triplet repeat RNA- 99.7 3.6E-17 1.2E-21 130.4 12.3 86 112-197 23-108 (115)
79 3md1_A Nuclear and cytoplasmic 99.7 9.3E-18 3.2E-22 125.6 8.2 80 16-95 1-81 (83)
80 2dh8_A DAZ-associated protein 99.7 2.4E-17 8E-22 129.3 10.9 88 9-96 9-96 (105)
81 2dnm_A SRP46 splicing factor; 99.7 2.4E-17 8.1E-22 128.8 10.8 87 111-197 10-96 (103)
82 1x5t_A Splicing factor 3B subu 99.7 1.5E-17 5.1E-22 128.1 9.5 86 112-197 3-89 (96)
83 2cpz_A CUG triplet repeat RNA- 99.7 1.6E-17 5.6E-22 132.4 10.0 88 10-97 19-107 (115)
84 2cpf_A RNA binding motif prote 99.7 2.1E-17 7.1E-22 127.9 10.2 86 112-197 3-91 (98)
85 3ucg_A Polyadenylate-binding p 99.7 1.6E-17 5.4E-22 126.1 9.1 81 14-94 4-84 (89)
86 2do4_A Squamous cell carcinoma 99.7 1.9E-17 6.5E-22 128.6 9.7 85 10-95 11-96 (100)
87 2la6_A RNA-binding protein FUS 99.7 1.5E-17 5.3E-22 128.9 9.1 84 9-92 6-98 (99)
88 1x5s_A Cold-inducible RNA-bind 99.7 2.6E-17 8.9E-22 128.3 10.5 87 111-197 9-95 (102)
89 2cpe_A RNA-binding protein EWS 99.7 5.5E-17 1.9E-21 128.9 12.5 88 110-197 11-106 (113)
90 2cqb_A Peptidyl-prolyl CIS-tra 99.7 8.3E-18 2.8E-22 131.1 7.5 88 10-97 6-94 (102)
91 2dnz_A Probable RNA-binding pr 99.7 1.8E-17 6E-22 127.5 9.1 84 14-97 3-87 (95)
92 1oo0_B CG8781-PA, drosophila Y 99.7 3.7E-17 1.3E-21 129.3 11.2 86 111-196 23-108 (110)
93 2cph_A RNA binding motif prote 99.7 1.9E-17 6.4E-22 130.2 9.4 92 6-97 5-99 (107)
94 2cph_A RNA binding motif prote 99.7 5.7E-17 1.9E-21 127.5 12.1 87 111-197 12-100 (107)
95 2dng_A Eukaryotic translation 99.7 1.1E-16 3.8E-21 125.0 13.7 85 111-197 12-96 (103)
96 2dgp_A Bruno-like 4, RNA bindi 99.7 1E-17 3.6E-22 131.5 7.8 91 7-97 4-98 (106)
97 2dnh_A Bruno-like 5, RNA bindi 99.7 6.7E-17 2.3E-21 126.6 12.4 85 112-197 13-100 (105)
98 1x4h_A RNA-binding protein 28; 99.7 5.2E-17 1.8E-21 128.6 11.8 87 111-197 12-104 (111)
99 2dgp_A Bruno-like 4, RNA bindi 99.7 3.3E-17 1.1E-21 128.6 10.6 87 111-197 10-99 (106)
100 2cqp_A RNA-binding protein 12; 99.7 4.2E-17 1.4E-21 126.2 10.9 84 111-194 12-95 (98)
101 2e5h_A Zinc finger CCHC-type a 99.7 1.6E-17 5.3E-22 127.5 8.4 84 10-93 10-94 (94)
102 1u6f_A Tcubp1, RNA-binding pro 99.7 4E-17 1.4E-21 134.6 11.5 91 8-98 34-125 (139)
103 2d9p_A Polyadenylate-binding p 99.7 1E-16 3.4E-21 125.2 13.2 85 111-197 12-96 (103)
104 2x1f_A MRNA 3'-END-processing 99.7 1.2E-17 4E-22 128.9 7.7 82 15-96 1-83 (96)
105 1oo0_B CG8781-PA, drosophila Y 99.7 9.9E-18 3.4E-22 132.6 7.4 89 8-96 18-107 (110)
106 3p5t_L Cleavage and polyadenyl 99.7 4.2E-18 1.4E-22 129.8 5.0 80 17-96 2-84 (90)
107 4a8x_A RNA-binding protein wit 99.7 3.2E-17 1.1E-21 124.0 9.9 83 113-195 3-86 (88)
108 2div_A TRNA selenocysteine ass 99.7 2.6E-17 8.7E-22 127.6 9.5 85 112-196 7-96 (99)
109 2cpf_A RNA binding motif prote 99.7 2E-17 6.9E-22 128.0 8.7 84 14-97 3-90 (98)
110 2ywk_A Putative RNA-binding pr 99.7 2E-17 6.7E-22 127.2 8.6 84 9-93 9-93 (95)
111 1x5s_A Cold-inducible RNA-bind 99.7 1.6E-17 5.6E-22 129.5 8.2 86 11-96 7-93 (102)
112 3ns6_A Eukaryotic translation 99.7 6.4E-18 2.2E-22 131.5 5.7 81 114-194 6-93 (100)
113 2khc_A Testis-specific RNP-typ 99.7 1.7E-17 5.8E-22 133.0 8.3 82 11-92 35-117 (118)
114 3s7r_A Heterogeneous nuclear r 99.7 6.1E-17 2.1E-21 122.4 10.9 80 111-191 8-87 (87)
115 2rs2_A Musashi-1, RNA-binding 99.7 1.3E-17 4.5E-22 131.8 7.5 89 7-95 16-104 (109)
116 1wi8_A EIF-4B, eukaryotic tran 99.7 1.1E-16 3.9E-21 125.2 12.8 84 112-197 13-97 (104)
117 2khc_A Testis-specific RNP-typ 99.7 5.9E-17 2E-21 129.8 11.3 82 111-192 37-118 (118)
118 2div_A TRNA selenocysteine ass 99.7 2E-17 6.7E-22 128.3 8.1 84 12-95 5-94 (99)
119 2cqg_A TDP-43, TAR DNA-binding 99.7 6.6E-17 2.3E-21 126.2 11.1 88 8-96 7-94 (103)
120 2mss_A Protein (musashi1); RNA 99.7 7.4E-18 2.5E-22 123.8 5.2 75 18-92 1-75 (75)
121 2cqi_A Nucleolysin TIAR; RNA r 99.7 4.5E-17 1.5E-21 127.2 10.0 88 7-96 6-94 (103)
122 2cqd_A RNA-binding region cont 99.7 8.1E-17 2.8E-21 128.6 11.7 87 8-95 9-96 (116)
123 2dgv_A HnRNP M, heterogeneous 99.7 5.9E-17 2E-21 123.7 10.4 84 112-197 6-89 (92)
124 1x5t_A Splicing factor 3B subu 99.7 1.8E-17 6E-22 127.7 7.5 83 14-96 3-87 (96)
125 3ns6_A Eukaryotic translation 99.7 6.9E-18 2.3E-22 131.3 5.2 82 14-95 4-93 (100)
126 3lqv_A PRE-mRNA branch site pr 99.7 5.5E-18 1.9E-22 135.2 4.7 103 14-140 6-109 (115)
127 2d9p_A Polyadenylate-binding p 99.7 4.3E-17 1.5E-21 127.4 9.7 87 9-97 8-95 (103)
128 1wi8_A EIF-4B, eukaryotic tran 99.7 3.2E-17 1.1E-21 128.4 8.9 86 11-97 10-96 (104)
129 1p1t_A Cleavage stimulation fa 99.7 7.6E-18 2.6E-22 131.8 5.3 85 12-96 4-89 (104)
130 2kxn_B Transformer-2 protein h 99.7 1.7E-17 5.9E-22 135.2 7.5 87 10-96 40-127 (129)
131 2hvz_A Splicing factor, argini 99.7 9.5E-18 3.2E-22 130.6 5.7 99 17-123 1-100 (101)
132 3ulh_A THO complex subunit 4; 99.7 1.1E-16 3.7E-21 125.9 11.8 81 111-192 26-106 (107)
133 2ywk_A Putative RNA-binding pr 99.7 6.2E-17 2.1E-21 124.4 10.0 82 111-193 13-94 (95)
134 2fy1_A RNA-binding motif prote 99.7 7E-17 2.4E-21 129.1 10.6 85 112-197 5-89 (116)
135 1x4e_A RNA binding motif, sing 99.7 1.8E-17 6E-22 124.8 6.6 80 112-191 3-82 (85)
136 3ucg_A Polyadenylate-binding p 99.7 6.1E-17 2.1E-21 122.8 9.6 80 114-194 6-85 (89)
137 2do0_A HnRNP M, heterogeneous 99.7 1.2E-16 4.2E-21 127.0 11.8 86 10-96 9-95 (114)
138 2cpy_A RNA-binding protein 12; 99.7 1.8E-17 6.1E-22 132.1 6.8 86 10-96 9-95 (114)
139 2cq3_A RNA-binding protein 9; 99.7 3.3E-16 1.1E-20 122.3 13.8 85 111-197 12-96 (103)
140 2kxn_B Transformer-2 protein h 99.7 5.8E-17 2E-21 132.0 9.9 85 111-195 43-127 (129)
141 2ek1_A RNA-binding protein 12; 99.7 4.5E-17 1.5E-21 125.2 8.7 81 112-192 13-93 (95)
142 2cpe_A RNA-binding protein EWS 99.7 3.5E-17 1.2E-21 130.1 8.4 88 10-97 9-105 (113)
143 2xs2_A Deleted in azoospermia- 99.7 4.8E-17 1.6E-21 126.8 9.0 85 9-95 2-86 (102)
144 1x4b_A Heterogeneous nuclear r 99.7 2.8E-17 9.7E-22 131.3 7.8 87 11-97 22-108 (116)
145 3pgw_A U1-A; protein-RNA compl 99.7 2.2E-16 7.5E-21 145.6 15.0 81 112-195 7-91 (282)
146 2fy1_A RNA-binding motif prote 99.7 5.5E-17 1.9E-21 129.7 9.4 84 13-97 4-88 (116)
147 2dnh_A Bruno-like 5, RNA bindi 99.7 8.2E-17 2.8E-21 126.1 10.2 84 13-97 12-99 (105)
148 4a8x_A RNA-binding protein wit 99.7 2.3E-17 8E-22 124.8 6.7 82 14-95 2-85 (88)
149 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.8E-16 9.5E-21 122.7 13.0 85 111-197 12-96 (103)
150 3n9u_C Cleavage and polyadenyl 99.7 5.6E-17 1.9E-21 136.5 9.6 82 113-194 54-137 (156)
151 2dhg_A TRNA selenocysteine ass 99.7 6.2E-17 2.1E-21 126.6 9.1 85 12-97 5-92 (104)
152 2cqd_A RNA-binding region cont 99.7 2.1E-16 7.1E-21 126.2 12.3 85 111-196 14-98 (116)
153 2j76_E EIF-4B, EIF4B, eukaryot 99.7 7.2E-18 2.5E-22 131.2 3.6 87 8-95 11-98 (100)
154 2dgx_A KIAA0430 protein; RRM d 99.7 1.3E-16 4.5E-21 123.0 10.6 82 112-196 7-92 (96)
155 2m2b_A RNA-binding protein 10; 99.7 2.4E-17 8.1E-22 134.7 6.8 90 6-96 13-109 (131)
156 2cq3_A RNA-binding protein 9; 99.7 1.1E-16 3.8E-21 125.0 10.3 89 7-97 6-95 (103)
157 3pgw_S U1-70K; protein-RNA com 99.7 2.4E-17 8.1E-22 161.1 7.9 165 32-196 8-184 (437)
158 2dh8_A DAZ-associated protein 99.7 1.1E-16 3.9E-21 125.4 10.3 86 111-197 13-98 (105)
159 3sde_A Paraspeckle component 1 99.7 2.3E-16 8E-21 144.0 13.9 131 111-247 19-156 (261)
160 1u6f_A Tcubp1, RNA-binding pro 99.7 1.5E-16 5.3E-21 131.1 11.5 88 110-197 38-125 (139)
161 1s79_A Lupus LA protein; RRM, 99.7 4E-17 1.4E-21 127.5 7.5 79 113-193 10-88 (103)
162 3n9u_C Cleavage and polyadenyl 99.7 4.3E-17 1.5E-21 137.1 8.1 80 15-94 54-136 (156)
163 1wez_A HnRNP H', FTP-3, hetero 99.7 4E-17 1.4E-21 127.4 7.3 82 12-95 11-92 (102)
164 2kt5_A RNA and export factor-b 99.7 3.2E-16 1.1E-20 126.7 12.7 86 111-197 32-117 (124)
165 2cq4_A RNA binding motif prote 99.7 5.6E-17 1.9E-21 129.1 8.1 82 113-195 24-105 (114)
166 2db1_A Heterogeneous nuclear r 99.7 5.2E-17 1.8E-21 130.2 7.9 85 10-95 11-98 (118)
167 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.9E-17 1.3E-21 127.0 6.9 83 111-195 16-99 (100)
168 3ex7_B RNA-binding protein 8A; 99.7 1.2E-16 4.1E-21 129.5 10.1 87 111-197 19-105 (126)
169 2dhg_A TRNA selenocysteine ass 99.7 1.2E-16 4.3E-21 124.9 9.9 85 112-197 7-93 (104)
170 1fje_B Nucleolin RBD12, protei 99.7 4E-17 1.4E-21 139.6 7.6 133 111-246 10-154 (175)
171 2nlw_A Eukaryotic translation 99.7 1.1E-16 3.8E-21 125.6 9.5 84 9-94 8-99 (105)
172 2mss_A Protein (musashi1); RNA 99.7 2.8E-17 9.5E-22 120.6 5.7 75 116-191 1-75 (75)
173 2dgw_A Probable RNA-binding pr 99.7 2.9E-16 9.8E-21 119.7 11.6 81 112-195 8-88 (91)
174 1x4e_A RNA binding motif, sing 99.7 1E-17 3.5E-22 126.1 3.3 80 14-93 3-83 (85)
175 3ex7_B RNA-binding protein 8A; 99.7 4.4E-17 1.5E-21 132.1 7.2 89 9-97 15-104 (126)
176 2cqg_A TDP-43, TAR DNA-binding 99.7 5E-16 1.7E-20 121.2 13.0 85 111-197 12-96 (103)
177 2do0_A HnRNP M, heterogeneous 99.7 6.3E-16 2.1E-20 122.9 13.8 84 112-196 13-96 (114)
178 3ulh_A THO complex subunit 4; 99.7 7.5E-17 2.6E-21 126.8 8.2 82 11-93 24-106 (107)
179 1iqt_A AUF1, heterogeneous nuc 99.7 1.8E-17 6.1E-22 121.6 4.3 75 18-92 1-75 (75)
180 1wg5_A Heterogeneous nuclear r 99.7 8.7E-17 3E-21 125.9 8.5 85 10-95 9-94 (104)
181 2rs2_A Musashi-1, RNA-binding 99.7 1.7E-16 6E-21 125.3 10.2 85 111-196 22-106 (109)
182 2cpi_A CCR4-NOT transcription 99.7 4.5E-16 1.5E-20 123.3 12.6 85 112-196 13-103 (111)
183 2m2b_A RNA-binding protein 10; 99.7 5.6E-17 1.9E-21 132.5 7.5 87 110-197 19-111 (131)
184 2dgw_A Probable RNA-binding pr 99.7 1.2E-16 4.1E-21 121.8 8.8 82 12-95 6-87 (91)
185 2err_A Ataxin-2-binding protei 99.7 1.8E-16 6.2E-21 125.2 10.1 83 110-194 25-107 (109)
186 1p1t_A Cleavage stimulation fa 99.7 6.5E-17 2.2E-21 126.4 7.4 83 114-196 8-90 (104)
187 1sjq_A Polypyrimidine tract-bi 99.7 9.4E-17 3.2E-21 125.1 8.1 80 112-197 14-95 (105)
188 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4.7E-17 1.6E-21 120.0 6.1 75 17-92 1-76 (77)
189 3r27_A HnRNP L, heterogeneous 99.7 1.7E-16 5.8E-21 122.4 9.4 78 112-195 19-98 (100)
190 2wbr_A GW182, gawky, LD47780P; 99.7 1E-16 3.5E-21 119.5 7.7 72 114-191 7-78 (89)
191 1x5o_A RNA binding motif, sing 99.7 6.8E-16 2.3E-20 122.7 13.1 83 111-194 22-112 (114)
192 2cqp_A RNA-binding protein 12; 99.7 6.1E-17 2.1E-21 125.2 6.8 83 12-94 11-94 (98)
193 3lqv_A PRE-mRNA branch site pr 99.7 5.8E-17 2E-21 129.2 6.8 105 112-220 6-110 (115)
194 2dgv_A HnRNP M, heterogeneous 99.7 1.1E-16 3.9E-21 122.1 8.2 83 12-96 4-87 (92)
195 2ki2_A SS-DNA binding protein 99.7 2.8E-17 9.7E-22 125.0 4.8 82 115-197 2-83 (90)
196 1sjq_A Polypyrimidine tract-bi 99.7 5.7E-17 1.9E-21 126.3 6.5 79 12-96 12-93 (105)
197 1x4d_A Matrin 3; structural ge 99.7 3.3E-16 1.1E-20 121.8 10.7 79 112-196 13-94 (102)
198 3r27_A HnRNP L, heterogeneous 99.7 7.6E-17 2.6E-21 124.4 7.0 78 12-95 17-97 (100)
199 1x4b_A Heterogeneous nuclear r 99.7 1.7E-16 5.8E-21 126.7 9.4 84 113-197 26-109 (116)
200 2cq1_A PTB-like protein L; RRM 99.7 1.2E-15 4.1E-20 118.6 13.9 81 112-198 13-95 (101)
201 2jwn_A Embryonic polyadenylate 99.7 1E-16 3.6E-21 129.5 8.2 82 14-95 34-115 (124)
202 1h2v_Z 20 kDa nuclear CAP bind 99.7 4E-16 1.4E-20 131.3 12.1 86 111-196 36-121 (156)
203 2ek1_A RNA-binding protein 12; 99.7 3.7E-17 1.3E-21 125.6 5.2 81 13-93 12-93 (95)
204 2hgl_A HNRPF protein, heteroge 99.7 5.6E-17 1.9E-21 133.0 6.4 85 10-95 38-125 (136)
205 2dnn_A RNA-binding protein 12; 99.7 5.7E-17 2E-21 127.9 5.9 84 10-95 10-93 (109)
206 2err_A Ataxin-2-binding protei 99.7 1.2E-16 4E-21 126.3 7.7 85 9-95 22-107 (109)
207 1wel_A RNA-binding protein 12; 99.7 7.2E-17 2.5E-21 130.5 6.5 83 13-95 22-104 (124)
208 1fj7_A Nucleolin RBD1, protein 99.7 1.4E-17 4.7E-22 129.7 2.1 86 10-96 11-96 (101)
209 2lea_A Serine/arginine-rich sp 99.7 5.9E-17 2E-21 133.1 5.8 88 9-96 40-128 (135)
210 1uaw_A Mouse-musashi-1; RNP-ty 99.7 7E-17 2.4E-21 119.0 5.7 76 115-191 1-76 (77)
211 1x4a_A Splicing factor, argini 99.7 1E-15 3.5E-20 120.7 12.8 84 111-197 19-102 (109)
212 2fc9_A NCL protein; structure 99.7 9.5E-16 3.2E-20 119.2 12.4 84 111-198 12-95 (101)
213 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.2E-16 1.5E-20 128.4 10.9 81 111-191 60-140 (140)
214 2adc_A Polypyrimidine tract-bi 99.7 3.9E-16 1.3E-20 139.8 11.3 129 112-246 32-207 (229)
215 2ki2_A SS-DNA binding protein 99.7 3.4E-17 1.2E-21 124.6 3.7 79 17-96 2-81 (90)
216 2dis_A Unnamed protein product 99.7 3.2E-16 1.1E-20 123.6 9.5 86 112-197 6-95 (109)
217 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.5E-16 8.7E-21 132.5 9.4 86 11-96 34-120 (156)
218 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.9E-16 6.4E-21 130.6 8.5 82 11-92 58-140 (140)
219 2dis_A Unnamed protein product 99.7 2.1E-16 7.2E-21 124.7 8.3 85 13-97 5-94 (109)
220 2kn4_A Immunoglobulin G-bindin 99.7 2E-16 6.8E-21 133.3 8.7 86 11-96 65-151 (158)
221 2a3j_A U1 small nuclear ribonu 99.7 1.3E-16 4.4E-21 129.3 7.1 85 10-97 23-112 (127)
222 2jwn_A Embryonic polyadenylate 99.7 3.9E-16 1.3E-20 126.1 9.9 82 114-196 36-117 (124)
223 2nlw_A Eukaryotic translation 99.7 2.6E-16 8.9E-21 123.4 8.4 82 113-196 14-102 (105)
224 2cpy_A RNA-binding protein 12; 99.7 3.9E-16 1.3E-20 124.3 9.5 82 111-194 12-94 (114)
225 2cq1_A PTB-like protein L; RRM 99.7 3.1E-16 1.1E-20 121.9 8.7 85 6-96 5-92 (101)
226 1wex_A Hypothetical protein (r 99.6 3.1E-16 1.1E-20 122.6 8.7 83 8-96 7-92 (104)
227 2kt5_A RNA and export factor-b 99.6 4.3E-16 1.5E-20 125.9 9.8 83 12-95 31-114 (124)
228 1x4a_A Splicing factor, argini 99.6 3.9E-16 1.3E-20 123.1 9.4 85 9-96 15-100 (109)
229 2dgx_A KIAA0430 protein; RRM d 99.6 1.9E-16 6.3E-21 122.2 7.1 80 13-95 6-90 (96)
230 1qm9_A Polypyrimidine tract-bi 99.6 3.9E-16 1.3E-20 136.3 10.1 127 114-246 3-176 (198)
231 1rk8_A CG8781-PA, CG8781-PA pr 99.6 2.5E-16 8.5E-21 133.9 8.5 88 9-96 65-153 (165)
232 1wez_A HnRNP H', FTP-3, hetero 99.6 6.6E-16 2.3E-20 120.4 10.3 83 111-196 12-94 (102)
233 1wg5_A Heterogeneous nuclear r 99.6 1.2E-15 4.1E-20 119.4 11.8 82 112-195 13-95 (104)
234 2db1_A Heterogeneous nuclear r 99.6 5.7E-16 1.9E-20 124.2 10.0 80 112-193 15-97 (118)
235 1wex_A Hypothetical protein (r 99.6 1E-15 3.4E-20 119.7 11.1 80 112-197 13-94 (104)
236 2hgm_A HNRPF protein, heteroge 99.6 1.9E-16 6.4E-21 128.0 7.1 83 11-95 37-121 (126)
237 2fc8_A NCL protein; structure 99.6 2.3E-15 7.7E-20 117.2 13.1 84 111-197 12-95 (102)
238 2lmi_A GRSF-1, G-rich sequence 99.6 5.3E-17 1.8E-21 127.8 3.6 85 10-95 5-92 (107)
239 2cpj_A Non-POU domain-containi 99.6 1.3E-15 4.4E-20 118.0 11.3 81 111-197 12-92 (99)
240 1x4d_A Matrin 3; structural ge 99.6 1.5E-16 5.3E-21 123.6 6.1 79 12-96 11-93 (102)
241 2krb_A Eukaryotic translation 99.6 1.2E-16 4.2E-21 119.1 5.1 72 16-89 1-80 (81)
242 2g4b_A Splicing factor U2AF 65 99.6 1.3E-15 4.3E-20 129.6 12.0 126 114-246 4-154 (172)
243 2ad9_A Polypyrimidine tract-bi 99.6 4E-16 1.4E-20 124.5 8.2 81 11-97 26-109 (119)
244 2ad9_A Polypyrimidine tract-bi 99.6 8.6E-16 2.9E-20 122.6 10.1 81 112-198 29-111 (119)
245 2dgt_A RNA-binding protein 30; 99.6 2.4E-15 8.2E-20 114.8 12.1 80 111-198 7-86 (92)
246 1x5o_A RNA binding motif, sing 99.6 6.5E-16 2.2E-20 122.9 9.1 82 11-93 20-110 (114)
247 2cpi_A CCR4-NOT transcription 99.6 2.5E-16 8.4E-21 124.8 6.6 87 10-96 9-102 (111)
248 1wel_A RNA-binding protein 12; 99.6 3.6E-16 1.2E-20 126.4 7.5 81 112-193 23-103 (124)
249 2hgl_A HNRPF protein, heteroge 99.6 4E-16 1.4E-20 127.9 7.9 80 112-193 42-124 (136)
250 2dnq_A RNA-binding protein 4B; 99.6 1.8E-15 6.1E-20 115.1 11.0 78 112-197 6-83 (90)
251 2fc8_A NCL protein; structure 99.6 7.2E-16 2.5E-20 120.0 9.0 90 5-97 4-94 (102)
252 2krb_A Eukaryotic translation 99.6 1.7E-16 5.8E-21 118.3 5.1 72 115-188 2-80 (81)
253 2fc9_A NCL protein; structure 99.6 4.8E-16 1.7E-20 120.8 7.9 83 10-96 9-92 (101)
254 1fj7_A Nucleolin RBD1, protein 99.6 1.2E-16 4E-21 124.4 4.2 83 112-196 15-97 (101)
255 2a3j_A U1 small nuclear ribonu 99.6 7.2E-16 2.5E-20 124.9 8.9 82 112-196 27-112 (127)
256 2jvr_A Nucleolar protein 3; RN 99.6 6.4E-16 2.2E-20 122.2 8.4 79 112-194 26-105 (111)
257 2ytc_A PRE-mRNA-splicing facto 99.6 5.6E-16 1.9E-20 116.4 7.7 79 9-93 5-85 (85)
258 2cpx_A Hypothetical protein FL 99.6 1.9E-16 6.6E-21 126.1 4.9 86 12-97 21-107 (115)
259 1why_A Hypothetical protein ri 99.6 2.4E-15 8.2E-20 116.0 11.0 79 112-196 15-95 (97)
260 2cpj_A Non-POU domain-containi 99.6 1.1E-15 3.7E-20 118.4 9.0 83 8-96 7-90 (99)
261 1iqt_A AUF1, heterogeneous nuc 99.6 1.3E-16 4.4E-21 117.0 3.5 75 116-191 1-75 (75)
262 2ytc_A PRE-mRNA-splicing facto 99.6 1.9E-15 6.4E-20 113.5 10.0 75 112-192 10-85 (85)
263 2lmi_A GRSF-1, G-rich sequence 99.6 3E-16 1E-20 123.5 5.8 81 111-193 8-91 (107)
264 1x4f_A Matrin 3; structural ge 99.6 2E-15 6.8E-20 119.1 10.4 81 111-197 22-105 (112)
265 2lcw_A RNA-binding protein FUS 99.4 3.2E-17 1.1E-21 131.0 0.0 86 12-97 3-97 (116)
266 2dnn_A RNA-binding protein 12; 99.6 1.2E-15 4.1E-20 120.3 9.1 77 114-193 16-92 (109)
267 2wbr_A GW182, gawky, LD47780P; 99.6 3.7E-16 1.3E-20 116.5 5.7 74 14-93 5-79 (89)
268 2dnq_A RNA-binding protein 4B; 99.6 1.2E-15 4E-20 116.1 8.6 77 13-97 5-82 (90)
269 2dha_A FLJ20171 protein; RRM d 99.6 2.6E-16 8.9E-21 126.8 5.1 80 14-94 21-104 (123)
270 1nu4_A U1A RNA binding domain; 99.6 6.3E-16 2.2E-20 119.2 7.1 82 112-196 6-91 (97)
271 1fjc_A Nucleolin RBD2, protein 99.6 1.1E-15 3.8E-20 117.6 8.4 80 112-196 14-93 (96)
272 2jvo_A Nucleolar protein 3; nu 99.6 1.8E-15 6.3E-20 119.2 9.8 79 110-196 27-105 (108)
273 3q2s_C Cleavage and polyadenyl 99.6 1.2E-15 4.1E-20 136.5 9.8 81 15-95 67-150 (229)
274 2e5j_A Methenyltetrahydrofolat 99.6 1.3E-15 4.6E-20 117.5 8.7 79 112-195 17-95 (97)
275 2cpx_A Hypothetical protein FL 99.6 6.4E-16 2.2E-20 123.0 7.1 86 112-197 23-108 (115)
276 1x4c_A Splicing factor, argini 99.6 3.1E-15 1.1E-19 117.8 10.8 79 112-197 13-96 (108)
277 2e5j_A Methenyltetrahydrofolat 99.6 9.5E-16 3.2E-20 118.3 7.6 83 8-95 11-94 (97)
278 1x4g_A Nucleolysin TIAR; struc 99.6 2.7E-15 9.3E-20 118.3 10.3 81 112-198 23-103 (109)
279 1x4c_A Splicing factor, argini 99.6 2.2E-15 7.6E-20 118.7 9.6 79 11-96 10-94 (108)
280 2la4_A Nuclear and cytoplasmic 99.6 1.6E-15 5.6E-20 117.8 8.6 76 113-194 26-101 (101)
281 2j8a_A Histone-lysine N-methyl 99.6 1.3E-15 4.5E-20 121.1 8.0 77 115-191 3-93 (136)
282 1fjc_A Nucleolin RBD2, protein 99.6 4E-16 1.4E-20 120.1 4.8 82 9-95 9-91 (96)
283 2dnp_A RNA-binding protein 14; 99.6 4.1E-15 1.4E-19 113.1 10.4 78 112-197 7-84 (90)
284 1nu4_A U1A RNA binding domain; 99.6 3.1E-16 1.1E-20 120.9 4.1 83 11-96 3-90 (97)
285 2xnq_A Nuclear polyadenylated 99.6 4.5E-15 1.6E-19 114.6 10.7 76 111-194 19-95 (97)
286 1x4f_A Matrin 3; structural ge 99.6 9.2E-16 3.1E-20 121.1 6.8 81 10-96 19-103 (112)
287 2hgn_A Heterogeneous nuclear r 99.6 2.6E-16 8.9E-21 129.5 3.7 124 59-196 2-125 (139)
288 2xs2_A Deleted in azoospermia- 99.6 1E-15 3.5E-20 119.2 6.9 81 113-196 8-88 (102)
289 2xnq_A Nuclear polyadenylated 99.6 1.5E-15 5E-20 117.3 7.6 79 8-94 14-94 (97)
290 2cpd_A Apobec-1 stimulating pr 99.6 1.3E-14 4.3E-19 112.3 12.9 79 111-197 12-92 (99)
291 1why_A Hypothetical protein ri 99.6 1.3E-15 4.4E-20 117.6 7.1 78 12-95 13-93 (97)
292 3q2s_C Cleavage and polyadenyl 99.6 1.1E-15 3.9E-20 136.6 7.8 82 113-194 67-150 (229)
293 2lcw_A RNA-binding protein FUS 99.4 7.5E-17 2.6E-21 128.8 0.0 85 113-197 6-98 (116)
294 2dgu_A Heterogeneous nuclear r 99.6 7E-15 2.4E-19 114.7 11.0 78 112-197 9-86 (103)
295 2hgn_A Heterogeneous nuclear r 99.6 2.2E-16 7.4E-21 130.0 2.4 83 11-95 41-123 (139)
296 2e5g_A U6 snRNA-specific termi 99.6 2.9E-15 9.9E-20 114.9 8.7 78 13-95 5-82 (94)
297 2jvo_A Nucleolar protein 3; nu 99.6 1.6E-15 5.4E-20 119.6 7.1 78 11-96 26-104 (108)
298 1wf1_A RNA-binding protein RAL 99.6 2.6E-15 9E-20 118.6 8.4 76 113-196 26-102 (110)
299 1x4g_A Nucleolysin TIAR; struc 99.6 1.9E-15 6.6E-20 119.2 7.5 80 12-97 21-101 (109)
300 2dgt_A RNA-binding protein 30; 99.6 3.2E-15 1.1E-19 114.2 8.3 78 11-96 5-83 (92)
301 1wf1_A RNA-binding protein RAL 99.6 5E-15 1.7E-19 117.0 9.7 75 13-95 24-100 (110)
302 2dgu_A Heterogeneous nuclear r 99.6 4.4E-15 1.5E-19 115.9 9.1 78 13-98 8-86 (103)
303 2la4_A Nuclear and cytoplasmic 99.6 1.4E-15 4.8E-20 118.2 6.2 76 13-94 24-100 (101)
304 2hzc_A Splicing factor U2AF 65 99.6 1.4E-15 4.9E-20 114.6 6.0 74 13-92 3-87 (87)
305 2hvz_A Splicing factor, argini 99.6 1.8E-15 6.2E-20 117.5 6.7 78 115-197 1-78 (101)
306 2jvr_A Nucleolar protein 3; RN 99.6 1.1E-15 3.7E-20 120.8 5.3 79 12-94 24-104 (111)
307 2cqh_A IGF-II mRNA-binding pro 99.6 4.9E-15 1.7E-19 113.3 8.8 79 112-197 6-86 (93)
308 2kvi_A Nuclear polyadenylated 99.6 5.6E-15 1.9E-19 113.7 9.1 78 112-197 8-86 (96)
309 2cpd_A Apobec-1 stimulating pr 99.6 8.7E-15 3E-19 113.3 10.1 79 10-96 9-90 (99)
310 2yh0_A Splicing factor U2AF 65 99.6 6.8E-15 2.3E-19 128.0 10.5 126 114-246 4-174 (198)
311 1whx_A Hypothetical protein ri 99.6 4.5E-15 1.5E-19 117.5 8.4 76 114-195 10-85 (111)
312 2j8a_A Histone-lysine N-methyl 99.6 7.5E-15 2.6E-19 116.8 9.6 77 17-93 3-94 (136)
313 3zzy_A Polypyrimidine tract-bi 99.6 1.4E-14 4.9E-19 117.0 11.3 81 112-197 26-109 (130)
314 2dnp_A RNA-binding protein 14; 99.6 3.7E-15 1.3E-19 113.3 7.4 77 12-96 5-82 (90)
315 2f3j_A RNA and export factor b 99.6 5.8E-15 2E-19 126.8 9.4 85 111-196 85-169 (177)
316 2dha_A FLJ20171 protein; RRM d 99.6 2.3E-15 7.9E-20 121.2 6.0 79 113-193 22-104 (123)
317 1wg1_A KIAA1579 protein, homol 99.6 1.1E-14 3.8E-19 110.1 9.5 76 113-195 4-79 (88)
318 2hgm_A HNRPF protein, heteroge 99.6 4.1E-15 1.4E-19 120.1 7.0 79 112-193 40-120 (126)
319 2e44_A Insulin-like growth fac 99.6 9.3E-15 3.2E-19 112.4 8.8 80 112-195 13-93 (96)
320 2i2y_A Fusion protein consists 99.6 3.6E-15 1.2E-19 124.5 7.0 82 9-95 66-148 (150)
321 1whx_A Hypothetical protein ri 99.6 1.3E-15 4.5E-20 120.6 4.1 77 12-94 6-83 (111)
322 2e5g_A U6 snRNA-specific termi 99.6 2E-14 6.7E-19 110.2 10.4 78 113-196 7-84 (94)
323 2cqh_A IGF-II mRNA-binding pro 99.6 3.7E-15 1.3E-19 113.9 6.2 78 13-97 5-85 (93)
324 2diu_A KIAA0430 protein; struc 99.6 1.7E-14 5.9E-19 108.5 9.5 75 114-198 8-88 (96)
325 3egn_A RNA-binding protein 40; 99.6 2.7E-15 9.3E-20 124.3 5.6 84 112-196 43-132 (143)
326 1x5p_A Negative elongation fac 99.6 4.2E-14 1.4E-18 109.0 11.8 78 111-196 12-89 (97)
327 2e5i_A Heterogeneous nuclear r 99.5 5E-14 1.7E-18 113.2 12.5 77 115-197 26-105 (124)
328 2kvi_A Nuclear polyadenylated 99.5 3.2E-15 1.1E-19 115.1 5.3 76 12-95 6-83 (96)
329 2dnl_A Cytoplasmic polyadenyla 99.5 6.3E-15 2.2E-19 117.2 7.1 77 12-91 4-84 (114)
330 2f3j_A RNA and export factor b 99.5 6.3E-15 2.1E-19 126.5 7.5 82 13-95 85-167 (177)
331 1sjr_A Polypyrimidine tract-bi 99.5 1.2E-14 4E-19 121.9 8.9 82 112-197 44-127 (164)
332 1x5p_A Negative elongation fac 99.5 1.9E-14 6.6E-19 110.9 9.2 82 7-96 6-88 (97)
333 2e44_A Insulin-like growth fac 99.5 6.8E-15 2.3E-19 113.1 6.4 81 11-95 10-92 (96)
334 2cq2_A Hypothetical protein LO 99.5 1.2E-14 4.2E-19 114.7 7.8 77 113-195 24-107 (114)
335 3d2w_A TAR DNA-binding protein 99.5 6.5E-15 2.2E-19 111.8 5.9 79 11-95 6-84 (89)
336 1wg1_A KIAA1579 protein, homol 99.5 5.8E-15 2E-19 111.7 5.6 76 13-95 2-78 (88)
337 3d2w_A TAR DNA-binding protein 99.5 2.9E-14 9.8E-19 108.2 9.1 76 112-196 9-86 (89)
338 3egn_A RNA-binding protein 40; 99.5 1.8E-15 6.1E-20 125.4 2.3 84 13-96 42-131 (143)
339 2voo_A Lupus LA protein; RNA-b 99.5 1.1E-14 3.7E-19 126.8 7.0 81 14-95 107-187 (193)
340 2dnl_A Cytoplasmic polyadenyla 99.5 4E-14 1.4E-18 112.5 9.6 76 112-190 6-84 (114)
341 2diu_A KIAA0430 protein; struc 99.5 2.7E-14 9.1E-19 107.5 7.9 76 13-98 5-87 (96)
342 1wf0_A TDP-43, TAR DNA-binding 99.5 8.6E-15 3E-19 110.7 5.2 77 14-96 3-79 (88)
343 2pe8_A Splicing factor 45; RRM 99.5 8.3E-14 2.8E-18 108.9 10.5 81 113-193 7-93 (105)
344 2cq2_A Hypothetical protein LO 99.5 1.2E-14 4.2E-19 114.7 5.4 78 11-94 20-105 (114)
345 2hzc_A Splicing factor U2AF 65 99.5 3.2E-14 1.1E-18 107.2 7.4 71 113-190 5-86 (87)
346 3pgw_S U1-70K; protein-RNA com 99.5 3.3E-14 1.1E-18 138.8 9.5 83 13-95 99-182 (437)
347 3beg_B Splicing factor, argini 99.5 2.6E-14 8.7E-19 113.9 7.0 75 113-194 15-94 (115)
348 3beg_B Splicing factor, argini 99.5 1.2E-14 4.1E-19 115.8 4.5 76 12-94 12-93 (115)
349 1wf0_A TDP-43, TAR DNA-binding 99.5 4.1E-14 1.4E-18 106.9 6.9 78 113-197 4-81 (88)
350 3zzy_A Polypyrimidine tract-bi 99.5 5.4E-14 1.8E-18 113.6 7.8 77 14-95 26-106 (130)
351 2pe8_A Splicing factor 45; RRM 99.5 7.3E-14 2.5E-18 109.3 8.2 84 13-96 5-95 (105)
352 1sjr_A Polypyrimidine tract-bi 99.5 6.5E-14 2.2E-18 117.4 8.3 78 14-95 44-124 (164)
353 2bz2_A Negative elongation fac 99.5 1.2E-13 4.2E-18 110.9 9.5 77 112-196 37-113 (121)
354 2voo_A Lupus LA protein; RNA-b 99.5 1.7E-13 5.9E-18 119.2 10.0 78 114-193 109-186 (193)
355 2bz2_A Negative elongation fac 99.4 8.7E-14 3E-18 111.8 6.0 76 12-95 35-111 (121)
356 2e5i_A Heterogeneous nuclear r 99.4 3.3E-13 1.1E-17 108.4 9.0 76 15-96 22-103 (124)
357 3u1l_A PRE-mRNA-splicing facto 99.4 2.6E-13 8.8E-18 121.2 7.5 80 112-197 132-232 (240)
358 3v4m_A Splicing factor U2AF 65 99.4 9E-13 3.1E-17 103.0 8.8 81 113-193 4-96 (105)
359 3u1l_A PRE-mRNA-splicing facto 99.4 2.8E-13 9.4E-18 121.0 6.1 81 11-97 129-231 (240)
360 2dit_A HIV TAT specific factor 99.4 4.7E-12 1.6E-16 100.2 12.5 83 111-197 12-105 (112)
361 1jmt_A Splicing factor U2AF 35 99.3 3.8E-13 1.3E-17 105.0 3.7 72 119-191 20-103 (104)
362 2dit_A HIV TAT specific factor 99.3 2.8E-12 9.7E-17 101.4 8.8 81 11-95 10-102 (112)
363 3ue2_A Poly(U)-binding-splicin 99.3 4.6E-12 1.6E-16 101.0 9.1 80 114-193 20-108 (118)
364 3v4m_A Splicing factor U2AF 65 99.3 1.5E-12 5.2E-17 101.7 5.1 82 14-95 3-97 (105)
365 3ue2_A Poly(U)-binding-splicin 99.3 4E-12 1.4E-16 101.3 6.8 82 14-95 18-109 (118)
366 1jmt_A Splicing factor U2AF 35 99.2 1.2E-12 4E-17 102.2 1.7 71 21-92 20-103 (104)
367 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.2E-10 4.1E-15 89.9 10.6 66 124-196 27-92 (100)
368 3s6e_A RNA-binding protein 39; 99.2 2.2E-11 7.4E-16 96.4 6.2 46 266-311 3-48 (114)
369 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.1E-10 3.6E-15 90.2 8.8 76 15-96 9-91 (100)
370 3s6e_A RNA-binding protein 39; 99.1 1.7E-10 5.9E-15 91.2 9.8 76 113-192 6-91 (114)
371 3tht_A Alkylated DNA repair pr 99.1 6.2E-11 2.1E-15 111.4 8.4 75 111-191 15-96 (345)
372 3tht_A Alkylated DNA repair pr 99.1 4.1E-11 1.4E-15 112.5 6.1 80 8-93 10-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 98.9 6.4E-09 2.2E-13 77.5 8.5 73 114-195 7-87 (91)
374 1owx_A Lupus LA protein, SS-B, 98.9 5.5E-09 1.9E-13 82.9 8.6 75 111-191 15-93 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.8 8E-09 2.7E-13 76.9 6.2 73 15-95 6-86 (91)
376 1owx_A Lupus LA protein, SS-B, 98.7 1.4E-08 4.9E-13 80.5 5.3 74 14-93 16-94 (121)
377 3dxb_A Thioredoxin N-terminall 98.7 3.1E-08 1.1E-12 87.7 7.4 67 126-192 141-211 (222)
378 1ufw_A Synaptojanin 2; RNP dom 98.6 3.3E-08 1.1E-12 74.0 5.3 72 14-93 13-93 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.6 3.8E-08 1.3E-12 73.6 5.2 70 113-191 14-92 (95)
380 2l9w_A U4/U6 snRNA-associated- 98.5 2.2E-07 7.5E-12 70.9 7.8 72 113-190 20-96 (117)
381 3dxb_A Thioredoxin N-terminall 98.5 1.8E-07 6.1E-12 82.7 8.2 82 14-95 122-213 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.3 1.1E-06 3.8E-11 67.0 5.5 72 15-92 20-97 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.1 1.1E-05 3.8E-10 61.0 7.2 89 14-127 6-99 (104)
384 1wey_A Calcipressin 1; structu 97.7 0.00012 4.1E-09 55.6 7.0 76 112-193 3-83 (104)
385 1uw4_A UPF3X; nonsense mediate 97.2 0.0014 4.7E-08 48.9 8.2 69 115-183 2-72 (91)
386 1whv_A Poly(A)-specific ribonu 97.2 0.0016 5.4E-08 48.7 7.7 55 114-177 16-70 (100)
387 2dhx_A Poly (ADP-ribose) polym 97.1 0.0077 2.6E-07 45.5 10.9 74 113-195 7-85 (104)
388 1uw4_A UPF3X; nonsense mediate 97.0 0.0012 4.3E-08 49.1 5.9 68 17-84 2-72 (91)
389 1wey_A Calcipressin 1; structu 97.0 0.0037 1.3E-07 47.4 8.3 74 15-94 4-83 (104)
390 1wwh_A Nucleoporin 35, nucleop 96.9 0.0013 4.6E-08 51.2 5.8 72 13-91 21-93 (119)
391 1whv_A Poly(A)-specific ribonu 96.7 0.0015 5.2E-08 48.7 4.4 57 11-76 11-67 (100)
392 3pq1_A Poly(A) RNA polymerase; 96.6 0.0017 5.8E-08 62.9 4.7 65 14-84 51-115 (464)
393 3ctr_A Poly(A)-specific ribonu 96.5 0.0026 9E-08 47.6 4.2 51 17-76 7-57 (101)
394 3ctr_A Poly(A)-specific ribonu 96.4 0.0042 1.5E-07 46.5 5.1 54 115-177 7-60 (101)
395 2l08_A Regulator of nonsense t 96.3 0.008 2.7E-07 45.0 6.0 70 114-183 9-80 (97)
396 1wwh_A Nucleoporin 35, nucleop 95.9 0.025 8.5E-07 44.0 7.4 72 113-192 23-95 (119)
397 2l08_A Regulator of nonsense t 95.0 0.0082 2.8E-07 45.0 1.6 71 14-84 7-80 (97)
398 3pq1_A Poly(A) RNA polymerase; 94.8 0.014 4.6E-07 56.6 3.0 54 115-174 54-107 (464)
399 3p3d_A Nucleoporin 53; structu 94.3 0.024 8.2E-07 44.8 2.8 78 15-93 6-97 (132)
400 3p3d_A Nucleoporin 53; structu 91.0 0.24 8.1E-06 39.1 4.3 75 115-191 8-96 (132)
401 3d45_A Poly(A)-specific ribonu 79.0 2.1 7.1E-05 42.0 5.2 53 15-76 439-491 (507)
402 3d45_A Poly(A)-specific ribonu 78.7 4.7 0.00016 39.5 7.6 56 114-178 440-495 (507)
403 4eyt_A Telomerase associated p 49.9 63 0.0021 23.3 6.6 56 114-177 12-67 (129)
404 1ceu_A Protein (HIV-1 regulato 42.4 19 0.00066 23.0 2.6 18 287-304 16-33 (51)
405 4e8u_A Putative uncharacterize 34.2 83 0.0028 25.7 6.0 50 18-70 14-74 (172)
406 2ln3_A De novo designed protei 33.4 42 0.0014 22.4 3.3 30 284-324 35-64 (83)
407 1esx_A VPR protein; helix, amp 32.4 33 0.0011 25.2 2.9 18 286-303 15-32 (96)
408 1ng7_A Poliovirus 3A-N, genome 25.8 30 0.001 23.0 1.5 20 289-308 25-45 (60)
409 4e8u_A Putative uncharacterize 23.4 1.2E+02 0.0042 24.7 5.1 56 116-174 14-81 (172)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=8e-35 Score=259.10 Aligned_cols=174 Identities=28% Similarity=0.448 Sum_probs=151.7
Q ss_pred CCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCee
Q psy2983 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIP 86 (370)
Q Consensus 8 ~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~ 86 (370)
.+.....+.++|||+|||.++|+++|+++|++||+|.+|++++|+.+++++|||||+|.+.++|.+|++ +++..+.|+.
T Consensus 7 ~p~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 7 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp --------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 334445678999999999999999999999999999999999999999999999999999999999995 9999999999
Q ss_pred EEEecccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCH
Q psy2983 87 IIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSA 166 (370)
Q Consensus 87 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~ 166 (370)
+++.++........ ....+|||+|||+.+++++|+++|++||.|..++++.+. +.++|||||+|.+.
T Consensus 87 i~~~~~~~~~~~~~-----------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~ 153 (213)
T 4f02_A 87 VRIMWSQRDPSLRK-----------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 153 (213)
T ss_dssp CEEEECCCCTHHHH-----------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSH
T ss_pred cccccccccccccc-----------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCH
Confidence 99988764332211 123689999999999999999999999999999999884 55899999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEEeecC
Q psy2983 167 DDAKKAQEQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 167 ~~a~~A~~~l~g~~i~g~~l~V~~~~~~ 194 (370)
++|.+|++.|||..|.|++|+|.++.++
T Consensus 154 ~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 154 EAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 9999999999999999999999998654
No 2
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.6e-34 Score=250.71 Aligned_cols=180 Identities=23% Similarity=0.416 Sum_probs=155.1
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIV 89 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v 89 (370)
+....+.++|||+|||.++|+++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++.++..+.|+.|.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v 86 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP 86 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeee
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHH
Q psy2983 90 QPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDA 169 (370)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a 169 (370)
.++........ +......++|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|
T Consensus 87 ~~~~~~~~~~~-------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A 159 (196)
T 1l3k_A 87 KRAVSREDSQR-------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 159 (196)
T ss_dssp EECCC------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred ecccCcccccc-------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHH
Confidence 98765432211 11223457999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEEeecCCCC
Q psy2983 170 KKAQEQLNGFELAGRPMKVGTVTDRNES 197 (370)
Q Consensus 170 ~~A~~~l~g~~i~g~~l~V~~~~~~~~~ 197 (370)
.+|+.. +|..+.|+.|.|.++.++...
T Consensus 160 ~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 160 DKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHHHHC-SCCEETTEECEEEECC-----
T ss_pred HHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 999995 899999999999998776554
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=239.63 Aligned_cols=164 Identities=24% Similarity=0.532 Sum_probs=151.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh-hccCCccCCeeEEEeccccc
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGIPIIVQPTQAE 95 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~i~g~~l~v~~~~~~ 95 (370)
|+|||+|||.++|+++|+++|+.||+|.++.+++++. ++++|||||+|.+.++|..|+ .++|..+.|++|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 7899999999999999999999999999999999875 678999999999999999999 59999999999999987643
Q ss_pred ccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHH
Q psy2983 96 KNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175 (370)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 175 (370)
.. .......+|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..
T Consensus 80 ~~-----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 148 (166)
T 3md3_A 80 QQ-----------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 148 (166)
T ss_dssp CC-----------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CC-----------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 22 1233467999999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCceeCCeeEEEEEee
Q psy2983 176 LNGFELAGRPMKVGTVT 192 (370)
Q Consensus 176 l~g~~i~g~~l~V~~~~ 192 (370)
|||..+.|++|+|.++.
T Consensus 149 l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 149 MQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HTTCEETTEECEEEESC
T ss_pred hCCCccCCcEEEEEecC
Confidence 99999999999999975
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.9e-33 Score=239.86 Aligned_cols=164 Identities=25% Similarity=0.417 Sum_probs=152.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEeccc
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~ 93 (370)
++++|||+|||.++++++|+++|+.||+|.++.+++++.+++++|||||+|.+.++|..|++ ++|..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999999999999999999999999996 99999999999999886
Q ss_pred ccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHH
Q psy2983 94 AEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173 (370)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~ 173 (370)
.... .....+|||+|||..+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|.+|+
T Consensus 82 ~~~~-------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 148 (168)
T 1b7f_A 82 PGGE-------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 148 (168)
T ss_dssp CCSS-------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCcc-------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHH
Confidence 4321 223578999999999999999999999999999999999889999999999999999999999
Q ss_pred HHhCCceeCC--eeEEEEEe
Q psy2983 174 EQLNGFELAG--RPMKVGTV 191 (370)
Q Consensus 174 ~~l~g~~i~g--~~l~V~~~ 191 (370)
..|||..+.| ++|+|.++
T Consensus 149 ~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 149 SALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHTTCCCTTCSSCCEEEEC
T ss_pred HHhcCCEecCCCeEEEEEeC
Confidence 9999999987 99999875
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.2e-33 Score=237.97 Aligned_cols=164 Identities=26% Similarity=0.448 Sum_probs=151.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEeccc
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~ 93 (370)
.+++|||+|||.++++++|+++|+.||+|.++.+++++.+++++|||||+|.+.++|..|++ ++|..+.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999999899999999999999999999996 99999999999999886
Q ss_pred ccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHH
Q psy2983 94 AEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173 (370)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~ 173 (370)
+.... ....+|||+|||..+++++|+++|++||.|..+++..+..+|.++|||||+|.+.++|.+|+
T Consensus 81 ~~~~~-------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 147 (167)
T 1fxl_A 81 PSSAS-------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 147 (167)
T ss_dssp CCCGG-------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCccc-------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHH
Confidence 44321 23468999999999999999999999999999999999889999999999999999999999
Q ss_pred HHhCCceeCCee--EEEEEe
Q psy2983 174 EQLNGFELAGRP--MKVGTV 191 (370)
Q Consensus 174 ~~l~g~~i~g~~--l~V~~~ 191 (370)
..|||..+.|+. |+|.++
T Consensus 148 ~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 148 KGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHTTCCCTTCSSCCEEEEC
T ss_pred HHhcCCccCCCccceEEEeC
Confidence 999999999975 777764
No 6
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=3.8e-34 Score=244.13 Aligned_cols=166 Identities=23% Similarity=0.463 Sum_probs=152.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEeccc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~~ 93 (370)
+++++|||+|||.++|+++|+++|+.||+|.++.+++++.+++++|||||+|.+.++|..|++ ++..+.|+.|.+.++.
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAI 79 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEccccccc
Confidence 467999999999999999999999999999999999999999999999999999999999997 3678999999988876
Q ss_pred ccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHH
Q psy2983 94 AEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173 (370)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~ 173 (370)
..... ....+|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+
T Consensus 80 ~~~~~-------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 146 (167)
T 2cjk_A 80 PRDEQ-------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVC 146 (167)
T ss_dssp CHHHH-------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHH
T ss_pred chhhc-------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 44322 12468999999999999999999999999999999999889999999999999999999999
Q ss_pred HHhCCceeCCeeEEEEEeecC
Q psy2983 174 EQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 174 ~~l~g~~i~g~~l~V~~~~~~ 194 (370)
+ ++|..+.|++|+|.++.++
T Consensus 147 ~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 147 Q-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp H-CSEECSSSSCEEEEECCCC
T ss_pred h-CCCEEeCCeEEEEeecCCC
Confidence 9 8999999999999998775
No 7
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=8e-33 Score=256.61 Aligned_cols=208 Identities=23% Similarity=0.343 Sum_probs=185.9
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
.+++++|||+|||.++|+++|+++|+.|| |.++.+ ++++|||||+|.+.++|..|++ ++|..+.|++|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 45789999999999999999999999999 999887 4568999999999999999995 999999999999987
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHH
Q psy2983 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKK 171 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~ 171 (370)
+. ...+|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+
T Consensus 92 ~~-------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 152 (284)
T 3smz_A 92 QP-------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAAR 152 (284)
T ss_dssp CC-------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred cC-------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHH
Confidence 43 23689999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHhCCceeCCeeEEEEEeecCCC----------CcCCCCCCC-CHHHHHHhcccCCceeeeeeeeccc---cCCC---
Q psy2983 172 AQEQLNGFELAGRPMKVGTVTDRNE----------SVGGGPSNL-DTDEMERAGVDLGATGRLQLMFKLA---EGTG--- 234 (370)
Q Consensus 172 A~~~l~g~~i~g~~l~V~~~~~~~~----------~~~~~~~~~-~~~~l~~~~~~~g~~~~~~l~~~~~---~~~~--- 234 (370)
|+..|+|..+.|+.|.|.++.+... .++++|..+ ++++++..|..+|.+..+.++.+.. ++++
T Consensus 153 A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~ 232 (284)
T 3smz_A 153 AKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLE 232 (284)
T ss_dssp HHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEE
T ss_pred HHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEE
Confidence 9999999999999999999876543 256889995 8999999999999999999887632 3344
Q ss_pred CCChHHHHHHHh
Q psy2983 235 LELPPAAASALN 246 (370)
Q Consensus 235 ~~~~~~a~~a~~ 246 (370)
|..+.+|..|+.
T Consensus 233 f~~~~~A~~A~~ 244 (284)
T 3smz_A 233 YETAEMAEEAQQ 244 (284)
T ss_dssp CSSHHHHHHHHH
T ss_pred eCCHHHHHHHHH
Confidence 778888888776
No 8
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.9e-33 Score=260.58 Aligned_cols=217 Identities=17% Similarity=0.238 Sum_probs=180.9
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIV 89 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v 89 (370)
+...++.++|||+|||.++|+++|+++|+.||+|.+|.++++..+ ++|||||+|.+.++|.+|++++|..+.|++|.|
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIV 112 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEE
Confidence 445678999999999999999999999999999999999998754 479999999999999999999999999999999
Q ss_pred ecccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCC-ceeeEEEeecCCCCCcccEEEEEECCHHH
Q psy2983 90 QPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFG-KIDNIQLMVDPDTGRSKGYGFITFHSADD 168 (370)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~ 168 (370)
.++. .++|||+|||+.+++++|+++|++|| .|..+.++.+. .|.++|||||+|.+.++
T Consensus 113 ~~~~--------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~ 171 (292)
T 2ghp_A 113 SHLT--------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKED 171 (292)
T ss_dssp EECC--------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHH
T ss_pred EECC--------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHH
Confidence 8752 46899999999999999999999999 99999999886 48899999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEEeecCCC--------------CcCCCCCC-CCHHHHHHhcccCCceeeeeeeeccc---
Q psy2983 169 AKKAQEQLNGFELAGRPMKVGTVTDRNE--------------SVGGGPSN-LDTDEMERAGVDLGATGRLQLMFKLA--- 230 (370)
Q Consensus 169 a~~A~~~l~g~~i~g~~l~V~~~~~~~~--------------~~~~~~~~-~~~~~l~~~~~~~g~~~~~~l~~~~~--- 230 (370)
|.+|+..|+|..+.|+.|.|.++.+... .+++++.. +++++|+..|..||.+..+.++.+..
T Consensus 172 a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg 251 (292)
T 2ghp_A 172 ARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHS 251 (292)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---
T ss_pred HHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCC
Confidence 9999999999999999999999765432 15567888 99999999999999999999887543
Q ss_pred --cCCC---CCChHHHHHHHhhhc
Q psy2983 231 --EGTG---LELPPAAASALNLAQ 249 (370)
Q Consensus 231 --~~~~---~~~~~~a~~a~~~~~ 249 (370)
++++ |..+.+|..|+.+.+
T Consensus 252 ~~~g~afV~F~~~~~A~~A~~l~g 275 (292)
T 2ghp_A 252 FNNCCAFMVFENKDSAERALQMNR 275 (292)
T ss_dssp CCCEEEEEEESSHHHHHHHGGGTT
T ss_pred CCceEEEEEeCCHHHHHHHHHhcC
Confidence 3444 677888888774433
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2e-32 Score=243.28 Aligned_cols=183 Identities=25% Similarity=0.446 Sum_probs=157.0
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
..+.++|||+|||.++|+++|+++|+.||+|.++.++++..+++++|||||+|.+.++|.+|++ ++|..+.|+.|.|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 4567899999999999999999999999999999999999899999999999999999999997 999999999999988
Q ss_pred ccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHH
Q psy2983 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKK 171 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~ 171 (370)
+........... .........++|||+|||..+++++|+++|++||.|..+++..++.+|.++|||||+|.+.++|.+
T Consensus 105 ~~~~~~~~~~~~--~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 105 PSNIGQAQPIID--QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CSCCGGGHHHHH--HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCccccchhhh--hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 764332110000 000011234789999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHhCCceeCCeeEEEEEeecCCCC
Q psy2983 172 AQEQLNGFELAGRPMKVGTVTDRNES 197 (370)
Q Consensus 172 A~~~l~g~~i~g~~l~V~~~~~~~~~ 197 (370)
|+..|||..|+|+.|+|.++.++..+
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHHccCCEeCCcEEEEEEecCCCCC
Confidence 99999999999999999998876554
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=4.1e-32 Score=233.01 Aligned_cols=164 Identities=27% Similarity=0.478 Sum_probs=147.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCC--CeecEEEEEecCCCChHHHhh-ccCCccC---CeeEE
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTR--RFKGIAYIEFKDPESVPLAMG-LNGQKLL---GIPII 88 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~--~~kg~afVeF~~~e~A~~Al~-l~g~~i~---g~~l~ 88 (370)
++++|||+|||.++|+++|+++|++||+|.++++++++.++ +++|||||+|.+.++|.+|++ ++|..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999999887 899999999999999999996 9998776 67777
Q ss_pred EecccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHH
Q psy2983 89 VQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADD 168 (370)
Q Consensus 89 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~ 168 (370)
+.++...... ....++|||+|||+.+++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++
T Consensus 82 ~~~~~~~~~~------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~ 148 (175)
T 3nmr_A 82 MKPADSEKNN------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAM 148 (175)
T ss_dssp EEECGGGCCS------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHH
T ss_pred Eccccccccc------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHH
Confidence 7776543221 2245789999999999999999999999999999999996 69999999999999999
Q ss_pred HHHHHHHhCCceeC---CeeEEEEEe
Q psy2983 169 AKKAQEQLNGFELA---GRPMKVGTV 191 (370)
Q Consensus 169 a~~A~~~l~g~~i~---g~~l~V~~~ 191 (370)
|.+|+..|||..+. +++|+|.++
T Consensus 149 A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 149 AQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCcccCCCCCCeEEEec
Confidence 99999999998776 499999986
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=3.7e-32 Score=232.94 Aligned_cols=159 Identities=25% Similarity=0.475 Sum_probs=144.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCcc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSV----G-------KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKL 82 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~----G-------~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i 82 (370)
+++++|||+|||.++|+++|+++|++| | .|.++.+. +++|||||+|.+.++|.+|++++|..+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 467999999999999999999999999 6 77777664 347999999999999999999999999
Q ss_pred CCeeEEEecccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEE
Q psy2983 83 LGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFIT 162 (370)
Q Consensus 83 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~ 162 (370)
.|++|.|.++..... .....+|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+
T Consensus 76 ~g~~i~v~~~~~~~~-------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~ 142 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP-------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCE 142 (172)
T ss_dssp TTEECEEECCSSCCC-------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEE
T ss_pred cCceeeecCCcccCC-------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEE
Confidence 999999988754321 1235789999999999999999999999999999999998899999999999
Q ss_pred ECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 163 FHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 163 f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
|.+.++|.+|+..|||..+.|++|+|.++
T Consensus 143 f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 143 YVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp ESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred eCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999999999986
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.98 E-value=1.1e-31 Score=235.16 Aligned_cols=177 Identities=22% Similarity=0.409 Sum_probs=150.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCcc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSV----G-------KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKL 82 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~----G-------~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i 82 (370)
+.+|+|||+|||.++|+++|+++|+.| | .|.++.+ ++++|||||+|.+.++|.+|++++|..+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 467999999999999999999999999 5 5666655 4558999999999999999999999999
Q ss_pred CCeeEEEecccccccccCCCCC-------CCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCc
Q psy2983 83 LGIPIIVQPTQAEKNRAGNTLP-------NLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRS 155 (370)
Q Consensus 83 ~g~~l~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~ 155 (370)
.|++|.|.++............ ..........++|||+|||..+++++|+++|++||.|..+.+..++.+|.+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 9999999988654322211100 011122345689999999999999999999999999999999999889999
Q ss_pred ccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecCCC
Q psy2983 156 KGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196 (370)
Q Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~~~ 196 (370)
+|||||+|.+.++|.+|+..|||..+.|+.|+|.++.++..
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999999999999877643
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=2.5e-32 Score=234.88 Aligned_cols=167 Identities=26% Similarity=0.398 Sum_probs=147.6
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEe
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQ 90 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~ 90 (370)
...++.++|||+|||.++|+++|+++|+.||.+.. .++.+..+++++|||||+|.+.++|.+|++++|..+.|++|.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEe
Confidence 35678899999999999999999999999998766 34555567888999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHH
Q psy2983 91 PTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAK 170 (370)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~ 170 (370)
++...... ......+|||+|||..+++++|+++|++||.|..+ ..+|.++|||||+|.+.++|.
T Consensus 87 ~~~~~~~~-----------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~ 150 (175)
T 1fje_B 87 KPKGRDSK-----------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAE 150 (175)
T ss_dssp CCCCSSCS-----------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHH
T ss_pred cCCCcccc-----------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHH
Confidence 98654221 12345799999999999999999999999988766 358999999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEEeecC
Q psy2983 171 KAQEQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 171 ~A~~~l~g~~i~g~~l~V~~~~~~ 194 (370)
+|+..|||..+.|+.|+|.++.++
T Consensus 151 ~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 151 KNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHhCCCEECCeEEEEEecCCC
Confidence 999999999999999999998765
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=3.8e-30 Score=238.56 Aligned_cols=172 Identities=20% Similarity=0.273 Sum_probs=157.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh-hccCCccCCeeEEEecc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGIPIIVQPT 92 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~i~g~~l~v~~~ 92 (370)
...++|||+|||..+++++|+++|+.||.|.++.++++..+|.++|||||+|.+.++|.+|+ .++|..+.|++|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999 59999999999999998
Q ss_pred cccccccCCCCCCCCCCCCCCCceEEEecCCCCC-CHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHH
Q psy2983 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI-TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKK 171 (370)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~-t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~ 171 (370)
....... ......+|||+|||..+ ++++|+++|++||.|..+.++.+. +|.++|+|||+|.+.++|.+
T Consensus 173 ~~~~~~~----------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~ 241 (284)
T 3smz_A 173 DAGQLTP----------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEE 241 (284)
T ss_dssp CGGGCCT----------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHH
T ss_pred CCCCCCc----------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHH
Confidence 7653221 12345789999999995 999999999999999999999986 89999999999999999999
Q ss_pred HHHHhCCceeCCeeEEEEEeecCCC
Q psy2983 172 AQEQLNGFELAGRPMKVGTVTDRNE 196 (370)
Q Consensus 172 A~~~l~g~~i~g~~l~V~~~~~~~~ 196 (370)
|+..|||..+.|++|+|.++.++..
T Consensus 242 A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 242 AQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHhCCCccCCeEEEEEEecCCCc
Confidence 9999999999999999999876544
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=4.3e-30 Score=227.03 Aligned_cols=170 Identities=18% Similarity=0.289 Sum_probs=140.5
Q ss_pred CCCeEEEcCCC-CCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 15 DARTIFCMQLS-QRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 15 ~~r~v~V~nLp-~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
++++|||+||| ..+++++|+++|++||.|.+|+++++. +|||||+|.+.++|..|++ |+|..+.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 899999999999999999999998753 7999999999999999996 9999999999999987
Q ss_pred cccccccCC--CC-----------C----CC-------CCCCCCCCceEEEecCCCCCCHHHHHhcccCCCce--eeEEE
Q psy2983 93 QAEKNRAGN--TL-----------P----NL-------QPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKI--DNIQL 146 (370)
Q Consensus 93 ~~~~~~~~~--~~-----------~----~~-------~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i--~~v~~ 146 (370)
+........ .. . .. ......+.++|||+|||+.+++++|+++|++||.| .++++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 643211000 00 0 00 00112345789999999999999999999999999 89998
Q ss_pred eecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCe----eEEEEEe
Q psy2983 147 MVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGR----PMKVGTV 191 (370)
Q Consensus 147 ~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~----~l~V~~~ 191 (370)
+.+. |.++|+|||+|.+.++|.+|+..|||..+.|+ ++.|+++
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8774 56679999999999999999999999999876 5666654
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.4e-29 Score=234.45 Aligned_cols=174 Identities=22% Similarity=0.406 Sum_probs=146.4
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh-hccCCccCCe
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLE----EFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGI 85 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~----~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~i~g~ 85 (370)
++.+++++|||+|||.++++++|+ ++|+.||.|.+|.+.+ +++++|||||+|.+.++|.+|+ .++|..+.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 356789999999999999999966 8999999999999876 5788999999999999999999 5999999999
Q ss_pred eEEEecccccccccCCCCC-------------------------------------------------------------
Q psy2983 86 PIIVQPTQAEKNRAGNTLP------------------------------------------------------------- 104 (370)
Q Consensus 86 ~l~v~~~~~~~~~~~~~~~------------------------------------------------------------- 104 (370)
.|+|.++............
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 9999887643321000000
Q ss_pred ----------------C---------------------CCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEe
Q psy2983 105 ----------------N---------------------LQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLM 147 (370)
Q Consensus 105 ----------------~---------------------~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~ 147 (370)
. .........++|||+|||..+++++|+++|++||.|..++++
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 0 000112245789999999999999999999999999999998
Q ss_pred ecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeC-CeeEEEEEee
Q psy2983 148 VDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA-GRPMKVGTVT 192 (370)
Q Consensus 148 ~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~-g~~l~V~~~~ 192 (370)
.+. +|||||+|.+.++|.+|+..|||..+. |+.|+|.+++
T Consensus 241 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 653 689999999999999999999999999 9999999975
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=9.6e-30 Score=236.77 Aligned_cols=172 Identities=20% Similarity=0.357 Sum_probs=145.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVG-KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G-~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
..++|||+|||..+++++|+++|+.|| .|.++.++++.. +.++|||||+|.+.++|.+|++ ++|..+.|++|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999998876 7789999999999999999997 9999999999999988
Q ss_pred cccccccCCCCCCCCCCCCCCCceEEEecCCCC-CCHHHHHhcccCCCceeeEEEeecCC-CCCcccEEEEEECCHHHHH
Q psy2983 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFN-ITEDMLRGIFEPFGKIDNIQLMVDPD-TGRSKGYGFITFHSADDAK 170 (370)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~e~l~~~f~~~G~i~~v~~~~~~~-~g~~~g~afV~f~~~~~a~ 170 (370)
.+....... ........+|||+|||.. +++++|+++|++||.|..++++.+.. +|.++|||||+|.+.++|.
T Consensus 195 ~~~~~~~~~------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~ 268 (292)
T 2ghp_A 195 NPLEKSKRT------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 268 (292)
T ss_dssp CCC---------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHH
T ss_pred CCCcccccc------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHH
Confidence 654332211 122345679999999999 99999999999999999999999875 4999999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEEeecC
Q psy2983 171 KAQEQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 171 ~A~~~l~g~~i~g~~l~V~~~~~~ 194 (370)
+|+ .|||..+.|+.|+|.++.++
T Consensus 269 ~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 269 RAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHH-HhcCCEECCcEEEEEEecCC
Confidence 999 99999999999999998765
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=2.5e-29 Score=226.06 Aligned_cols=174 Identities=19% Similarity=0.302 Sum_probs=146.4
Q ss_pred cccCCCCeEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEE
Q psy2983 11 PEERDARTIFCMQLSQ-RIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPII 88 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~-~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~ 88 (370)
....++++|||+|||. ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++ ++|..+.|++|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3456789999999999 99999999999999999999998865 6899999999999999996 999999999999
Q ss_pred EecccccccccCCCC---------------CCC-------CCCCCCCCceEEEecCCCCCCHHHHHhcccCCC-ceeeEE
Q psy2983 89 VQPTQAEKNRAGNTL---------------PNL-------QPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFG-KIDNIQ 145 (370)
Q Consensus 89 v~~~~~~~~~~~~~~---------------~~~-------~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G-~i~~v~ 145 (370)
|.++........... ... ......+..+|||+|||..+++++|+++|++|| .|..++
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 998764321110000 000 001123458899999999999999999999999 999999
Q ss_pred EeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeC-CeeEEEEEeecC
Q psy2983 146 LMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA-GRPMKVGTVTDR 194 (370)
Q Consensus 146 ~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~-g~~l~V~~~~~~ 194 (370)
++.+ .+|||||+|.+.++|.+|+..|||..+. |+.|+|.+++++
T Consensus 184 i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9653 3789999999999999999999999999 999999998764
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=1.6e-29 Score=221.79 Aligned_cols=170 Identities=19% Similarity=0.309 Sum_probs=144.0
Q ss_pred CCCeEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 15 DARTIFCMQLSQ-RIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 15 ~~r~v~V~nLp~-~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
.+++|||+|||. ++++++|+++|+.||.|.++.+++++ +|||||+|.+.++|.+|++ ++|..+.|++|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998764 6899999999999999996 9999999999999887
Q ss_pred cccccccCCC----------------------CCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCC-ceeeEEEeec
Q psy2983 93 QAEKNRAGNT----------------------LPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFG-KIDNIQLMVD 149 (370)
Q Consensus 93 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G-~i~~v~~~~~ 149 (370)
.......... ..........+..+|||+|||..+++++|+++|++|| .|..++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 6432111100 0000011123468999999999999999999999999 9999999754
Q ss_pred CCCCCcccEEEEEECCHHHHHHHHHHhCCceeC-CeeEEEEEeecC
Q psy2983 150 PDTGRSKGYGFITFHSADDAKKAQEQLNGFELA-GRPMKVGTVTDR 194 (370)
Q Consensus 150 ~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~-g~~l~V~~~~~~ 194 (370)
. +|+|||+|.+.++|.+|+..|||..+. |++|+|.++.++
T Consensus 157 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 D-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp T-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 2 789999999999999999999999999 999999998764
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=1.4e-28 Score=225.54 Aligned_cols=160 Identities=24% Similarity=0.412 Sum_probs=144.2
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPII 88 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~ 88 (370)
.....+.++|||+|||.++|+++|+++|+.||.|.+|.+.+ ++|||||+|.+.++|..|+. ++|..+.|+.|.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 33446678999999999999999999999999999999854 37999999999999999996 999999999999
Q ss_pred EecccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHH
Q psy2983 89 VQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADD 168 (370)
Q Consensus 89 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~ 168 (370)
|.++.. ..+|||+|||+.+++++|+++|++||.|..+.++.+ .+|.++|||||+|.+.++
T Consensus 90 v~~a~~-------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~ 149 (261)
T 3sde_A 90 IRFATH-------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPP 149 (261)
T ss_dssp EEECCC-------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHH
T ss_pred eeeccc-------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHH
Confidence 998752 358999999999999999999999999999999999 599999999999999999
Q ss_pred HHHHHHHhC-CceeC---CeeEEEEEeecCC
Q psy2983 169 AKKAQEQLN-GFELA---GRPMKVGTVTDRN 195 (370)
Q Consensus 169 a~~A~~~l~-g~~i~---g~~l~V~~~~~~~ 195 (370)
|.+|+..|| +..+. +++|.|.++....
T Consensus 150 A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 150 ARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 999999994 55555 9999999986543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=4.5e-23 Score=174.39 Aligned_cols=151 Identities=21% Similarity=0.329 Sum_probs=116.3
Q ss_pred EEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecccccccccCCCCCCCCCCCCCCCceEEEecCC
Q psy2983 45 DVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLH 123 (370)
Q Consensus 45 ~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp 123 (370)
++.++.+.. +++|||||+|.+.++|++|++ +++....+....+..........................+|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 456777664 689999999999999999995 55443333333333222221111111111222233456899999999
Q ss_pred CCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecCCCC
Q psy2983 124 FNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNES 197 (370)
Q Consensus 124 ~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~~~~ 197 (370)
+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|++|+|.++.++...
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 99999999999999999999999999889999999999999999999999999999999999999999876543
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=3.4e-21 Score=154.12 Aligned_cols=109 Identities=20% Similarity=0.315 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEeccc
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~ 93 (370)
.+.+|||+|||.++|+++|+++|++||.|.+++++++. +.++|||||+|.+.++|.+|++ |+|..+.|++|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46789999999999999999999999999999999986 4589999999999999999995 99999999999999876
Q ss_pred ccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHH
Q psy2983 94 AEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDM 130 (370)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~ 130 (370)
....+.... ........+|||+|||+++|++.
T Consensus 82 ~~~~~~~~~-----~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAEL-----GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC---------------------------------
T ss_pred Ccccccccc-----ccccCCCCceEeCCCCCCccccc
Confidence 543322211 11122345799999999999864
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=7.6e-21 Score=159.29 Aligned_cols=135 Identities=18% Similarity=0.283 Sum_probs=113.2
Q ss_pred CCeecEEEEEecCCCChHHHhh-c-cCCccCCeeEEEecccccccccCC---CCCCCCCCCCCCCceEEEecCCCCCCHH
Q psy2983 55 RRFKGIAYIEFKDPESVPLAMG-L-NGQKLLGIPIIVQPTQAEKNRAGN---TLPNLQPRGTGGPMRLYIGSLHFNITED 129 (370)
Q Consensus 55 ~~~kg~afVeF~~~e~A~~Al~-l-~g~~i~g~~l~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~V~nlp~~~t~e 129 (370)
...+|+++|+|.+.++|++|++ + +|..+.| .+.+.++......... .............++|||+|||+.++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 4678999999999999999995 8 9999999 9999887653322211 1111223334566899999999999999
Q ss_pred HHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecCC
Q psy2983 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRN 195 (370)
Q Consensus 130 ~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~~ 195 (370)
+|+++|++||.|..++++.+ ++|||||+|.+.++|.+|+..|||..+.|++|+|.++.++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999876 58999999999999999999999999999999999987753
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=140.96 Aligned_cols=81 Identities=33% Similarity=0.605 Sum_probs=77.6
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
...+|||+|||+++|+++|+++|++||.|.++++++|+.+|.++|||||+|.+.++|.+|++.|||..+.|++|+|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q psy2983 193 D 193 (370)
Q Consensus 193 ~ 193 (370)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 25
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=2.4e-19 Score=158.93 Aligned_cols=134 Identities=26% Similarity=0.379 Sum_probs=119.2
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
+.++|||+|||+++++++|+++|++||.|.+|++++|+.+|+++|||||+|.+.++|.+|+..+++..+.|+.+++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCC---------CCcCCCCCCCCHHHHHHhcccCCceeeeeeeecc--ccCCC---CCChHHHHHHHh
Q psy2983 193 DRN---------ESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKL--AEGTG---LELPPAAASALN 246 (370)
Q Consensus 193 ~~~---------~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~--~~~~~---~~~~~~a~~a~~ 246 (370)
... ..+++++..+++++|+..|..+|.+..+.++.+. +++++ |..+.+|..|+.
T Consensus 94 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~ 161 (213)
T 4f02_A 94 RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 161 (213)
T ss_dssp CCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHH
T ss_pred ccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHH
Confidence 443 2377899999999999999999999999998763 34455 567888888775
No 26
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.80 E-value=4.9e-19 Score=149.86 Aligned_cols=133 Identities=28% Similarity=0.476 Sum_probs=118.5
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999876
Q ss_pred CCC-------CcCCCCCCCCHHHHHHhcccCCceeeeeeeecc----ccCCC---CCChHHHHHHHh
Q psy2983 194 RNE-------SVGGGPSNLDTDEMERAGVDLGATGRLQLMFKL----AEGTG---LELPPAAASALN 246 (370)
Q Consensus 194 ~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~----~~~~~---~~~~~~a~~a~~ 246 (370)
... .+++++..+++++++..|..+|.+..+.++.+. .++++ |..+.+|..|+.
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 148 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 148 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHH
Confidence 543 367899999999999999999999998887764 23444 567788877766
No 27
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.80 E-value=7.6e-19 Score=149.07 Aligned_cols=134 Identities=25% Similarity=0.386 Sum_probs=119.2
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|+|..+.|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35789999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred cCCCC-------cCCCCCCCCHHHHHHhcccCCceeeeeeeeccc----cCCC---CCChHHHHHHHh
Q psy2983 193 DRNES-------VGGGPSNLDTDEMERAGVDLGATGRLQLMFKLA----EGTG---LELPPAAASALN 246 (370)
Q Consensus 193 ~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~----~~~~---~~~~~~a~~a~~ 246 (370)
+.... +.+++..+++++++..|..+|.+..+.++.+.. ++++ |..+.+|..|+.
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 65443 668999999999999999999999998887642 2344 677888888776
No 28
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=140.51 Aligned_cols=81 Identities=22% Similarity=0.372 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
-+.++|||+|||.++|+++|+++|++||+|.++++++|+.+|+++|||||+|.+.++|.+|++ |+|..+.|++|+|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 356789999999999999999999999999999999999999999999999999999999995 9999999999999987
Q ss_pred cc
Q psy2983 93 QA 94 (370)
Q Consensus 93 ~~ 94 (370)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 53
No 29
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=2.7e-18 Score=149.49 Aligned_cols=136 Identities=23% Similarity=0.437 Sum_probs=118.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 34568999999999999999999999999999999999998999999999999999999999985 99999999999999
Q ss_pred eecCCC-------------CcCCCCCCCCHHHHHHhcccCCceeeeeeeecc----ccCCC---CCChHHHHHHHhh
Q psy2983 191 VTDRNE-------------SVGGGPSNLDTDEMERAGVDLGATGRLQLMFKL----AEGTG---LELPPAAASALNL 247 (370)
Q Consensus 191 ~~~~~~-------------~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~----~~~~~---~~~~~~a~~a~~~ 247 (370)
+..... .+++++..+++++|+..|..+|.+..+.++.+. .+|++ |..+..|..|+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 89 AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp CCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred ccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 865422 266889999999999999999999999998763 23444 6778888888764
No 30
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.5e-18 Score=144.39 Aligned_cols=131 Identities=29% Similarity=0.480 Sum_probs=115.2
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecC
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~ 194 (370)
++|||+|||.++++++|+++|++||.|.++.++.++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999996 6889999999999999999999999999999999999998655
Q ss_pred CCC---------cCCCCCCCCHHHHHHhcccCCceeeeeeeecc----ccCCC---CCChHHHHHHHh
Q psy2983 195 NES---------VGGGPSNLDTDEMERAGVDLGATGRLQLMFKL----AEGTG---LELPPAAASALN 246 (370)
Q Consensus 195 ~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~----~~~~~---~~~~~~a~~a~~ 246 (370)
... +++++..+++++++..|..+|.+..+.++.+. ++|++ |..+.+|..|+.
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 432 66899999999999999999999999998763 23344 677888888876
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=136.69 Aligned_cols=82 Identities=17% Similarity=0.323 Sum_probs=78.0
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
.++++|||+|||+.+++++|+++|++||.|.+++++.|+.+|+++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ec
Q psy2983 192 TD 193 (370)
Q Consensus 192 ~~ 193 (370)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 32
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-19 Score=136.96 Aligned_cols=82 Identities=20% Similarity=0.348 Sum_probs=75.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-c-cCCccCCeeEEEecc
Q psy2983 16 ARTIFCMQLSQRIRTRDLEEFFSSVG-KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L-NGQKLLGIPIIVQPT 92 (370)
Q Consensus 16 ~r~v~V~nLp~~~te~~L~~~f~~~G-~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l-~g~~i~g~~l~v~~~ 92 (370)
+++|||+|||+++|+++|+++|++|| .|.+|++++|+.++.++|||||+|.+.++|.+|++ + ++..+.|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 58999999999999999999999999 89999999999999999999999999999999996 5 567899999999998
Q ss_pred ccccc
Q psy2983 93 QAEKN 97 (370)
Q Consensus 93 ~~~~~ 97 (370)
.+...
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76543
No 33
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=5.2e-18 Score=144.76 Aligned_cols=133 Identities=19% Similarity=0.371 Sum_probs=115.6
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCC--CcccEEEEEECCHHHHHHHHHHhCCceeC---CeeEEE
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTG--RSKGYGFITFHSADDAKKAQEQLNGFELA---GRPMKV 188 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~i~---g~~l~V 188 (370)
.++|||+|||+++++++|+++|++||.|.++++++++.+| .++|||||+|.+.++|.+|+..|+|..+. ++.+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 5789999999999999999999999999999999998776 89999999999999999999999998876 688888
Q ss_pred EEeecCCC--------CcCCCCCCCCHHHHHHhcccCCceeeeeeeeccc---cCCC---CCChHHHHHHHh
Q psy2983 189 GTVTDRNE--------SVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLA---EGTG---LELPPAAASALN 246 (370)
Q Consensus 189 ~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~---~~~~---~~~~~~a~~a~~ 246 (370)
.++..... .+++++..+++++++..|..+|.+.++.++.+.. ++++ |..+..|..|+.
T Consensus 83 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 3nmr_A 83 KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 154 (175)
T ss_dssp EECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred ccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHH
Confidence 88765443 2678999999999999999999999999987632 3344 677888888775
No 34
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=2.4e-18 Score=130.17 Aligned_cols=83 Identities=30% Similarity=0.427 Sum_probs=77.2
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIV 89 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v 89 (370)
++...+.++|||+|||..+++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|.+|+++++..++|+.|.|
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 84 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence 45567889999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred ecc
Q psy2983 90 QPT 92 (370)
Q Consensus 90 ~~~ 92 (370)
+++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 35
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=4.6e-19 Score=135.51 Aligned_cols=82 Identities=22% Similarity=0.428 Sum_probs=76.5
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCC-ceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHh-CCceeCCeeEEEEEee
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFG-KIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL-NGFELAGRPMKVGTVT 192 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l-~g~~i~g~~l~V~~~~ 192 (370)
++|||+|||+++|+++|+++|++|| .|.++++++|+.+|.++|||||+|.+.++|.+|++.+ ++..+.|++|+|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 8999999999999999999999999999999999987 4568999999999988
Q ss_pred cCCC
Q psy2983 193 DRNE 196 (370)
Q Consensus 193 ~~~~ 196 (370)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 36
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=137.71 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=78.4
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
..+.++|||+|||.++++++|+++|++||.|.++.+++|+.+++++|||||+|.+.++|.+|++ |||..+.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567999999999999999999999999999999999999999999999999999999999996 999999999999998
Q ss_pred cccc
Q psy2983 92 TQAE 95 (370)
Q Consensus 92 ~~~~ 95 (370)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 7644
No 37
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=2.6e-18 Score=137.19 Aligned_cols=82 Identities=34% Similarity=0.615 Sum_probs=75.2
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
+..+|||+|||+++++++|+++|++||.|.+++++.+. +.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 34689999999999999999999999999999999984 5589999999999999999999999999999999999987
Q ss_pred cCCC
Q psy2983 193 DRNE 196 (370)
Q Consensus 193 ~~~~ 196 (370)
++..
T Consensus 82 ~~~~ 85 (115)
T 4f25_A 82 SRKE 85 (115)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 6544
No 38
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=133.74 Aligned_cols=80 Identities=20% Similarity=0.418 Sum_probs=74.8
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCc--eeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCc----eeCCeeEE
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGK--IDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGF----ELAGRPMK 187 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~--i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~----~i~g~~l~ 187 (370)
-.+|||+|||+.+|+++|+++|++||. +.+|++++|+.+|.++|||||+|.+.++|.+|++.|||. .++|++|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 368999999999999999999999995 679999999999999999999999999999999999997 58999999
Q ss_pred EEEeec
Q psy2983 188 VGTVTD 193 (370)
Q Consensus 188 V~~~~~ 193 (370)
|.++++
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999864
No 39
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=134.52 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=76.2
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCC--eeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCC----ccCC
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGK--VRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQ----KLLG 84 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~--v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~----~i~g 84 (370)
.+..-.||||+|||+.+|+++|+++|++||. |.+|++++|+.+++++|||||+|.+.++|.+|++ ++|. .++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4567789999999999999999999999995 6799999999999999999999999999999996 8886 4899
Q ss_pred eeEEEecccc
Q psy2983 85 IPIIVQPTQA 94 (370)
Q Consensus 85 ~~l~v~~~~~ 94 (370)
++|.|.+++.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999998763
No 40
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=6.9e-18 Score=127.53 Aligned_cols=82 Identities=34% Similarity=0.652 Sum_probs=76.9
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
+.++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred cC
Q psy2983 193 DR 194 (370)
Q Consensus 193 ~~ 194 (370)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 41
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=9.9e-18 Score=125.48 Aligned_cols=81 Identities=35% Similarity=0.703 Sum_probs=77.6
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecC
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~ 194 (370)
.+|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999999999889999999999999999999999999999999999999998765
Q ss_pred C
Q psy2983 195 N 195 (370)
Q Consensus 195 ~ 195 (370)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 42
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.75 E-value=7.2e-18 Score=149.05 Aligned_cols=133 Identities=29% Similarity=0.484 Sum_probs=115.2
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
.++|||+|||.++++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999988754
Q ss_pred CC------------------CCcCCCCCCCCHHHHHHhcccCCceeeeeeeeccc----cCCC---CCChHHHHHHHh
Q psy2983 194 RN------------------ESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLA----EGTG---LELPPAAASALN 246 (370)
Q Consensus 194 ~~------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~----~~~~---~~~~~~a~~a~~ 246 (370)
.. ..+++++..+++++|+..|..+|.+..+.++.+.. ++++ |.....|..|+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 43 23678999999999999999999999999987632 3444 677888888877
No 43
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=128.63 Aligned_cols=86 Identities=74% Similarity=1.205 Sum_probs=81.1
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
.++++|||+|||..+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2983 192 TDRNES 197 (370)
Q Consensus 192 ~~~~~~ 197 (370)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876654
No 44
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-17 Score=129.16 Aligned_cols=87 Identities=31% Similarity=0.510 Sum_probs=81.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2983 191 VTDRNES 197 (370)
Q Consensus 191 ~~~~~~~ 197 (370)
+.++...
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 8776543
No 45
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=134.78 Aligned_cols=91 Identities=25% Similarity=0.430 Sum_probs=83.9
Q ss_pred CCCCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccC
Q psy2983 5 YSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLL 83 (370)
Q Consensus 5 ~~~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~ 83 (370)
....+++...+.++|||+|||..+++++|+++|+.||+|.++.+++++.+++++|||||+|.+.++|.+|++ ++|..+.
T Consensus 15 ~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 15 MANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp SCCSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 445556677888999999999999999999999999999999999999999999999999999999999996 9999999
Q ss_pred CeeEEEeccccc
Q psy2983 84 GIPIIVQPTQAE 95 (370)
Q Consensus 84 g~~l~v~~~~~~ 95 (370)
|++|.|.++...
T Consensus 95 g~~l~V~~a~~k 106 (108)
T 2jrs_A 95 GRPMKVGHVTER 106 (108)
T ss_dssp SSCCEEECSCSS
T ss_pred CEEEEEEEcccC
Confidence 999999988654
No 46
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=129.43 Aligned_cols=87 Identities=28% Similarity=0.526 Sum_probs=81.7
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecCCCCc
Q psy2983 192 TDRNESV 198 (370)
Q Consensus 192 ~~~~~~~ 198 (370)
.++....
T Consensus 86 ~~~~~~~ 92 (99)
T 1whw_A 86 TIKKEAS 92 (99)
T ss_dssp CCCSTTC
T ss_pred CCCcccc
Confidence 8876643
No 47
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-18 Score=137.68 Aligned_cols=93 Identities=72% Similarity=1.151 Sum_probs=83.9
Q ss_pred CCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCee
Q psy2983 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIP 86 (370)
Q Consensus 7 ~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~ 86 (370)
++..+.....++|||+|||..+++++|+++|+.||.|.+|.+++++.++.++|||||+|.+.++|.+|+.++|..|.|+.
T Consensus 16 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 95 (114)
T 2cq4_A 16 DNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVP 95 (114)
T ss_dssp CCCCTTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEE
T ss_pred CccCcccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeE
Confidence 33444556779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccc
Q psy2983 87 IIVQPTQAEKNRA 99 (370)
Q Consensus 87 l~v~~~~~~~~~~ 99 (370)
|.|.++.....+.
T Consensus 96 l~V~~a~~~~~~~ 108 (114)
T 2cq4_A 96 IIVQASQAEKNRL 108 (114)
T ss_dssp EEEEEHHHHHHHH
T ss_pred EEEEecCCCccCC
Confidence 9999987665443
No 48
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=9.4e-18 Score=142.71 Aligned_cols=134 Identities=25% Similarity=0.334 Sum_probs=80.5
Q ss_pred EEecCCCChHHHhh-ccCCccC--CeeEEEecccccccccC-------CCCCCCCCCCCCCCceEEEecCCCCCCHHHHH
Q psy2983 63 IEFKDPESVPLAMG-LNGQKLL--GIPIIVQPTQAEKNRAG-------NTLPNLQPRGTGGPMRLYIGSLHFNITEDMLR 132 (370)
Q Consensus 63 VeF~~~e~A~~Al~-l~g~~i~--g~~l~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~ 132 (370)
.+|.+.++|..++. +++.... |+............... .......+......++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 78999999999995 7776554 55555443221110000 00011122233456789999999999999999
Q ss_pred hcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecCCC
Q psy2983 133 GIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196 (370)
Q Consensus 133 ~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~~~ 196 (370)
++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.++..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999988999999999999999999999999999999999999999877554
No 49
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.6e-18 Score=134.17 Aligned_cols=89 Identities=22% Similarity=0.395 Sum_probs=81.2
Q ss_pred CCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCe
Q psy2983 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGI 85 (370)
Q Consensus 7 ~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~ 85 (370)
...+....+.++|||+|||..+++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++ ++|..+.|+
T Consensus 14 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 93 (106)
T 1p27_B 14 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 93 (106)
T ss_dssp -CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 3344456677899999999999999999999999999999999999999999999999999999999996 999999999
Q ss_pred eEEEeccccc
Q psy2983 86 PIIVQPTQAE 95 (370)
Q Consensus 86 ~l~v~~~~~~ 95 (370)
.|.|.++...
T Consensus 94 ~l~V~~a~~~ 103 (106)
T 1p27_B 94 PISVDWCFVR 103 (106)
T ss_dssp BCEEEESEES
T ss_pred EEEEEeecCC
Confidence 9999998754
No 50
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=1.6e-17 Score=132.47 Aligned_cols=91 Identities=22% Similarity=0.314 Sum_probs=83.0
Q ss_pred CCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCee
Q psy2983 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIP 86 (370)
Q Consensus 8 ~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~ 86 (370)
.......+.++|||+|||..+++++|+++|+.||.|.+|.+++++.++.++|||||+|.+.++|.+|++ |+|..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 7 GQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp SSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 334556788999999999999999999999999999999999999899999999999999999999996 9999999999
Q ss_pred EEEecccccccc
Q psy2983 87 IIVQPTQAEKNR 98 (370)
Q Consensus 87 l~v~~~~~~~~~ 98 (370)
|.|.++......
T Consensus 87 l~V~~a~~~~~~ 98 (115)
T 2dgo_A 87 IRTNWATRKPPA 98 (115)
T ss_dssp CEEEESSCCCCC
T ss_pred EEEEEccCCCCC
Confidence 999998765443
No 51
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.4e-18 Score=131.40 Aligned_cols=87 Identities=24% Similarity=0.358 Sum_probs=81.3
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPII 88 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~ 88 (370)
++...+.++|||+|||..+++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++ |+|..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 4456778999999999999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred Eecccccc
Q psy2983 89 VQPTQAEK 96 (370)
Q Consensus 89 v~~~~~~~ 96 (370)
|.++....
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 99987543
No 52
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.7e-18 Score=131.36 Aligned_cols=86 Identities=22% Similarity=0.431 Sum_probs=80.4
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEec
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQP 91 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~ 91 (370)
...+.++|||+|||..+++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|+++++..+.|+.|.|.+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 85 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q psy2983 92 TQAEKN 97 (370)
Q Consensus 92 ~~~~~~ 97 (370)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 876543
No 53
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=127.18 Aligned_cols=83 Identities=34% Similarity=0.590 Sum_probs=78.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44568999999999999999999999999999999999998999999999999999999999999999999999999998
Q ss_pred eec
Q psy2983 191 VTD 193 (370)
Q Consensus 191 ~~~ 193 (370)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 754
No 54
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=1.1e-17 Score=125.86 Aligned_cols=81 Identities=33% Similarity=0.620 Sum_probs=77.0
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999986
Q ss_pred e
Q psy2983 192 T 192 (370)
Q Consensus 192 ~ 192 (370)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 55
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=126.49 Aligned_cols=82 Identities=32% Similarity=0.550 Sum_probs=77.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34567999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred ee
Q psy2983 191 VT 192 (370)
Q Consensus 191 ~~ 192 (370)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 56
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=1.4e-17 Score=128.48 Aligned_cols=83 Identities=34% Similarity=0.668 Sum_probs=79.0
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
.++|||+|||..+++++|+++|++||.|..+++..++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999877
Q ss_pred CCC
Q psy2983 194 RNE 196 (370)
Q Consensus 194 ~~~ 196 (370)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 654
No 57
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.74 E-value=5.1e-18 Score=143.87 Aligned_cols=132 Identities=27% Similarity=0.500 Sum_probs=115.3
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
.++|||+|||+++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|+. ++..+.|+.|.+.++.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccccc
Confidence 4789999999999999999999999999999999998899999999999999999999998 46789999999998764
Q ss_pred CC-------CCcCCCCCCCCHHHHHHhcccCCceeeeeeeecc----ccCCC---CCChHHHHHHHhh
Q psy2983 194 RN-------ESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKL----AEGTG---LELPPAAASALNL 247 (370)
Q Consensus 194 ~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~----~~~~~---~~~~~~a~~a~~~ 247 (370)
+. ..+++++..+++++|+..|..+|.+..+.++.+. ++|++ |..+.+|..|+.+
T Consensus 81 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 148 (167)
T 2cjk_A 81 RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 148 (167)
T ss_dssp HHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHC
T ss_pred hhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhC
Confidence 33 2367899999999999999999999999888763 23444 6778888888764
No 58
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=127.67 Aligned_cols=85 Identities=24% Similarity=0.560 Sum_probs=79.9
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
...++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++ |++..+.|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999998899999999999999999999999 9999999999999999
Q ss_pred ecCCCC
Q psy2983 192 TDRNES 197 (370)
Q Consensus 192 ~~~~~~ 197 (370)
.++...
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876554
No 59
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=1.7e-18 Score=142.26 Aligned_cols=124 Identities=23% Similarity=0.385 Sum_probs=82.0
Q ss_pred EEEEEecCCCChHHHhh-ccCCccCCeeEEEecccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCC
Q psy2983 60 IAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPF 138 (370)
Q Consensus 60 ~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~ 138 (370)
++|.+|.+...+..|++ ++|....|+.- ..+. ..+......++|||+|||+.+++++|+++|++|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~-------------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~ 71 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYG-------------RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKY 71 (135)
T ss_dssp ------------------------------CCSC-------------CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGG
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcC-------------CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 67788888888888885 77766555421 1111 111223345789999999999999999999999
Q ss_pred CceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecCCCC
Q psy2983 139 GKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNES 197 (370)
Q Consensus 139 G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~~~~ 197 (370)
|.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+....
T Consensus 72 G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 72 GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 99999999999889999999999999999999999999999999999999998776543
No 60
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=129.41 Aligned_cols=87 Identities=31% Similarity=0.552 Sum_probs=81.5
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecCCCCc
Q psy2983 192 TDRNESV 198 (370)
Q Consensus 192 ~~~~~~~ 198 (370)
.++....
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8766543
No 61
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=131.48 Aligned_cols=88 Identities=77% Similarity=1.295 Sum_probs=81.7
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q psy2983 108 PRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187 (370)
Q Consensus 108 ~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 187 (370)
+....++++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|+|..+.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEeecCC
Q psy2983 188 VGTVTDRN 195 (370)
Q Consensus 188 V~~~~~~~ 195 (370)
|.++.++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99987653
No 62
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.1e-17 Score=127.42 Aligned_cols=85 Identities=20% Similarity=0.462 Sum_probs=79.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||..+++++|+++|++||.|..+.+..++ +|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred eecCCC
Q psy2983 191 VTDRNE 196 (370)
Q Consensus 191 ~~~~~~ 196 (370)
+.++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 877643
No 63
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=128.55 Aligned_cols=83 Identities=29% Similarity=0.485 Sum_probs=78.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHhcccCCCceee--------EEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCcee
Q psy2983 110 GTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDN--------IQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181 (370)
Q Consensus 110 ~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~--------v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i 181 (370)
......+|||+|||..+++++|+++|++||.|.. ++++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3455689999999999999999999999999999 99999988999999999999999999999999999999
Q ss_pred CCeeEEEEEee
Q psy2983 182 AGRPMKVGTVT 192 (370)
Q Consensus 182 ~g~~l~V~~~~ 192 (370)
.|+.|+|.+++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999863
No 64
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=2.3e-18 Score=131.30 Aligned_cols=82 Identities=27% Similarity=0.417 Sum_probs=72.8
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCC--ceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFG--KIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G--~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
.+|||+|||+.+++++|+++|++|| .|.+++++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred cCCC
Q psy2983 193 DRNE 196 (370)
Q Consensus 193 ~~~~ 196 (370)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6544
No 65
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=129.38 Aligned_cols=88 Identities=28% Similarity=0.538 Sum_probs=82.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q psy2983 110 GTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189 (370)
Q Consensus 110 ~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~ 189 (370)
.....++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34556899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q psy2983 190 TVTDRNES 197 (370)
Q Consensus 190 ~~~~~~~~ 197 (370)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 98776554
No 66
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=5.8e-17 Score=129.20 Aligned_cols=88 Identities=33% Similarity=0.633 Sum_probs=82.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q psy2983 110 GTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189 (370)
Q Consensus 110 ~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~ 189 (370)
.....++|||+|||..+++++|+++|+.||.|..++++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q psy2983 190 TVTDRNES 197 (370)
Q Consensus 190 ~~~~~~~~ 197 (370)
++.++...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 98776554
No 67
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8.4e-18 Score=130.36 Aligned_cols=85 Identities=27% Similarity=0.417 Sum_probs=79.8
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh-hccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~i~g~~l~v~~ 91 (370)
..+.++|||+|||..+++++|+++|+.||+|.++.+++++.+++++|||||+|.+.++|.+|+ .++|..+.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999999999989999999999999999999999 5999999999999999
Q ss_pred cccccc
Q psy2983 92 TQAEKN 97 (370)
Q Consensus 92 ~~~~~~ 97 (370)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 876544
No 68
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.4e-18 Score=131.11 Aligned_cols=89 Identities=25% Similarity=0.344 Sum_probs=82.0
Q ss_pred CCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCee
Q psy2983 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIP 86 (370)
Q Consensus 8 ~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~ 86 (370)
.......+.++|||+|||..+++++|+++|++||+|.+|.+++++.++.++|||||+|.+.++|.+|++ ++|..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 7 GPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp CSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 334456778999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred EEEecccccc
Q psy2983 87 IIVQPTQAEK 96 (370)
Q Consensus 87 l~v~~~~~~~ 96 (370)
|.|.++....
T Consensus 87 l~v~~a~~~~ 96 (103)
T 2cq0_A 87 LNVEWAKPST 96 (103)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 9999987654
No 69
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=6.1e-18 Score=127.26 Aligned_cols=81 Identities=22% Similarity=0.436 Sum_probs=76.6
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
..+.++|||+|||..+++++|+++|++||+|.++.+++++.+++++|||||+|.+.++|.+|++ ++|..+.|++|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3577999999999999999999999999999999999999999999999999999999999994 999999999999987
Q ss_pred cc
Q psy2983 92 TQ 93 (370)
Q Consensus 92 ~~ 93 (370)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 70
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=131.98 Aligned_cols=91 Identities=24% Similarity=0.365 Sum_probs=83.8
Q ss_pred CCCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-cc------
Q psy2983 6 SDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LN------ 78 (370)
Q Consensus 6 ~~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~------ 78 (370)
+...++...+.++|||+|||..+++++|+++|+.||.|.+|.+++++.++.++|||||+|.+.++|.+|++ ++
T Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 84 (111)
T 1x4h_A 5 SSGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGG 84 (111)
T ss_dssp CCCCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTC
T ss_pred CCCCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccC
Confidence 44556677789999999999999999999999999999999999999999999999999999999999996 88
Q ss_pred CCccCCeeEEEecccccc
Q psy2983 79 GQKLLGIPIIVQPTQAEK 96 (370)
Q Consensus 79 g~~i~g~~l~v~~~~~~~ 96 (370)
+..+.|++|.|.++....
T Consensus 85 ~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 85 GLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp CEESSSCEEEEECCCCCC
T ss_pred CcEEcCEEEEEEECCCCc
Confidence 999999999999987653
No 71
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=2.2e-17 Score=145.39 Aligned_cols=129 Identities=15% Similarity=0.232 Sum_probs=108.7
Q ss_pred CCceEEEecCC-CCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 113 GPMRLYIGSLH-FNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 113 ~~~~l~V~nlp-~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
+..+|||+||| ..+++++|+++|++||.|.++++++++ +|||||+|.+.++|.+|++.|||..+.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 35789999999 899999999999999999999998653 799999999999999999999999999999999987
Q ss_pred ecCC--------------------------------------------CCcCCCCCCCCHHHHHHhcccCCce--eeeee
Q psy2983 192 TDRN--------------------------------------------ESVGGGPSNLDTDEMERAGVDLGAT--GRLQL 225 (370)
Q Consensus 192 ~~~~--------------------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~--~~~~l 225 (370)
+... ..+++++..+++++|+..|..+|.+ .++.+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 5211 0134677889999999999999998 78888
Q ss_pred eeccc--cCCC---CCChHHHHHHHh
Q psy2983 226 MFKLA--EGTG---LELPPAAASALN 246 (370)
Q Consensus 226 ~~~~~--~~~~---~~~~~~a~~a~~ 246 (370)
+.+.. +++| |...+.|..|+.
T Consensus 158 ~~~~~~~~g~gfV~f~~~~~A~~Ai~ 183 (205)
T 3tyt_A 158 FSGKSERSSSGLLEWDSKSDALETLG 183 (205)
T ss_dssp CSCCSSSSEEEEEECSSHHHHHHHHH
T ss_pred EcCCCCCceEEEEEeCCHHHHHHHHH
Confidence 76532 2455 677888877765
No 72
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=2e-17 Score=129.32 Aligned_cols=88 Identities=24% Similarity=0.400 Sum_probs=80.7
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEE
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPII 88 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~ 88 (370)
.+....+.++|||+|||..+++++|+++|+.|| |.+|.+++++.+++++|||||+|.+.++|.+|++++|..+.|++|.
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 86 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLR 86 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECE
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEE
Confidence 344456789999999999999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred Eeccccccc
Q psy2983 89 VQPTQAEKN 97 (370)
Q Consensus 89 v~~~~~~~~ 97 (370)
|.++.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dng_A 87 VDIAEGRKQ 95 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999876543
No 73
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=6.7e-18 Score=127.61 Aligned_cols=81 Identities=23% Similarity=0.313 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
.+.++|||+|||.++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++ ++|..+.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 467899999999999999999999999999999999999899999999999999999999996 9999999999999987
Q ss_pred cc
Q psy2983 93 QA 94 (370)
Q Consensus 93 ~~ 94 (370)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 74
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=128.37 Aligned_cols=85 Identities=27% Similarity=0.371 Sum_probs=79.2
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPII 88 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~ 88 (370)
.....+.++|||+|||..+++++|+++|+.||+|.++.+++++.+++++|||||+|.+.++|.+|++ ++|..+.|++|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999996 999999999999
Q ss_pred Eecccc
Q psy2983 89 VQPTQA 94 (370)
Q Consensus 89 v~~~~~ 94 (370)
|.+++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 998753
No 75
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=129.96 Aligned_cols=84 Identities=32% Similarity=0.524 Sum_probs=79.8
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
...++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 44578999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ecCC
Q psy2983 192 TDRN 195 (370)
Q Consensus 192 ~~~~ 195 (370)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7754
No 76
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.6e-18 Score=131.49 Aligned_cols=89 Identities=24% Similarity=0.353 Sum_probs=81.9
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeE
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPI 87 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l 87 (370)
.+....+.++|||+|||..+++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|.+|++ |+|..+.|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34456688999999999999999999999999999999999999899999999999999999999997 99999999999
Q ss_pred EEeccccccc
Q psy2983 88 IVQPTQAEKN 97 (370)
Q Consensus 88 ~v~~~~~~~~ 97 (370)
.|.++.....
T Consensus 88 ~v~~a~~~~~ 97 (105)
T 1x5u_A 88 RVNKASAHNK 97 (105)
T ss_dssp EEEETTTTSC
T ss_pred EEEECCCCCc
Confidence 9999876543
No 77
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.3e-18 Score=133.79 Aligned_cols=82 Identities=17% Similarity=0.321 Sum_probs=77.0
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEecc
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~ 92 (370)
..+.++|||+|||.++|+++|+++|++||+|.+|.+++++. ++++|||||+|.+.++|.+|++++|..+.|+.|.|.+.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 44679999999999999999999999999999999999987 99999999999999999999999999999999999987
Q ss_pred ccc
Q psy2983 93 QAE 95 (370)
Q Consensus 93 ~~~ 95 (370)
...
T Consensus 87 ~~~ 89 (103)
T 1s79_A 87 DDY 89 (103)
T ss_dssp HHH
T ss_pred hHH
Confidence 653
No 78
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=3.6e-17 Score=130.42 Aligned_cols=86 Identities=27% Similarity=0.497 Sum_probs=80.8
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
...++|||+|||..+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45579999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ecCCCC
Q psy2983 192 TDRNES 197 (370)
Q Consensus 192 ~~~~~~ 197 (370)
.++...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 876553
No 79
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.72 E-value=9.3e-18 Score=125.63 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=76.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecccc
Q psy2983 16 ARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQA 94 (370)
Q Consensus 16 ~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~~ 94 (370)
+.+|||+|||.++++++|+++|++||+|.++.+++++.+++++|||||+|.+.++|.+|++ ++|..+.|++|.|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999999999999999999999999999996 999999999999999875
Q ss_pred c
Q psy2983 95 E 95 (370)
Q Consensus 95 ~ 95 (370)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 80
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=129.29 Aligned_cols=88 Identities=22% Similarity=0.360 Sum_probs=81.3
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEE
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPII 88 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~ 88 (370)
......+.++|||+|||..+++++|+++|+.||+|.+|.+++++.++.++|||||+|.+.++|.+|++.++..|.|+.|.
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~ 88 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNID 88 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEB
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEE
Confidence 34456788999999999999999999999999999999999999999999999999999999999997799999999999
Q ss_pred Eecccccc
Q psy2983 89 VQPTQAEK 96 (370)
Q Consensus 89 v~~~~~~~ 96 (370)
|.++....
T Consensus 89 V~~a~~~~ 96 (105)
T 2dh8_A 89 PKPCTPRG 96 (105)
T ss_dssp CCCSCCSS
T ss_pred EEEccCCC
Confidence 99987554
No 81
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=128.82 Aligned_cols=87 Identities=28% Similarity=0.616 Sum_probs=81.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
..+.++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2983 191 VTDRNES 197 (370)
Q Consensus 191 ~~~~~~~ 197 (370)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 8875543
No 82
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=128.13 Aligned_cols=86 Identities=40% Similarity=0.665 Sum_probs=80.5
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeE-EEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNI-QLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
.+.++|||+|||..+++++|+++|++||.|..+ +++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345799999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2983 191 VTDRNES 197 (370)
Q Consensus 191 ~~~~~~~ 197 (370)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 8776543
No 83
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.72 E-value=1.6e-17 Score=132.45 Aligned_cols=88 Identities=20% Similarity=0.365 Sum_probs=80.7
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh-hccCCccCCeeEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGIPII 88 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~i~g~~l~ 88 (370)
.....+.++|||+|||..+++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|+ .|++..|.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344557799999999999999999999999999999999999989999999999999999999999 4999999999999
Q ss_pred Eeccccccc
Q psy2983 89 VQPTQAEKN 97 (370)
Q Consensus 89 v~~~~~~~~ 97 (370)
|.++.....
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999876543
No 84
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=127.87 Aligned_cols=86 Identities=28% Similarity=0.555 Sum_probs=79.3
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCC---CCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD---TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V 188 (370)
.+.++|||+|||+.+++++|+++|++||.|..+.+..++. ++.++|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3457899999999999999999999999999999998876 5689999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q psy2983 189 GTVTDRNES 197 (370)
Q Consensus 189 ~~~~~~~~~ 197 (370)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 998776554
No 85
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=1.6e-17 Score=126.11 Aligned_cols=81 Identities=32% Similarity=0.485 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEeccc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~~ 93 (370)
.+.++|||+|||.++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|+.++|..+.|+.|.|.++.
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 35689999999999999999999999999999999999989999999999999999999999999999999999999876
Q ss_pred c
Q psy2983 94 A 94 (370)
Q Consensus 94 ~ 94 (370)
.
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 86
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=128.65 Aligned_cols=85 Identities=24% Similarity=0.385 Sum_probs=78.6
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPII 88 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~ 88 (370)
.....+.++|||+|||..+++++|+++|+.||.|.++.++.++ +++++|||||+|.+.++|.+|++ ++|..+.|++|.
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445678999999999999999999999999999999999998 89999999999999999999995 999999999999
Q ss_pred Eeccccc
Q psy2983 89 VQPTQAE 95 (370)
Q Consensus 89 v~~~~~~ 95 (370)
|.++.+.
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998754
No 87
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=128.94 Aligned_cols=84 Identities=27% Similarity=0.516 Sum_probs=78.5
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeE--------EEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccC
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRD--------VRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNG 79 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~--------v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g 79 (370)
.+......++|||+|||.++++++|+++|++||.|.. +.+++++.+++++|||||+|.+.++|.+|++ ++|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3445567899999999999999999999999999999 9999999999999999999999999999996 999
Q ss_pred CccCCeeEEEecc
Q psy2983 80 QKLLGIPIIVQPT 92 (370)
Q Consensus 80 ~~i~g~~l~v~~~ 92 (370)
..+.|+.|+|.++
T Consensus 86 ~~~~g~~l~V~~A 98 (99)
T 2la6_A 86 KEFSGNPIKVSFA 98 (99)
T ss_dssp CBSSSSBCEEEEC
T ss_pred CEeCCcEEEEEec
Confidence 9999999999876
No 88
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=128.29 Aligned_cols=87 Identities=32% Similarity=0.674 Sum_probs=81.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2983 191 VTDRNES 197 (370)
Q Consensus 191 ~~~~~~~ 197 (370)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876654
No 89
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.5e-17 Score=128.92 Aligned_cols=88 Identities=24% Similarity=0.424 Sum_probs=81.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHhcccCCCcee--------eEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCcee
Q psy2983 110 GTGGPMRLYIGSLHFNITEDMLRGIFEPFGKID--------NIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181 (370)
Q Consensus 110 ~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~--------~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i 181 (370)
.....++|||+|||+.+++++|+++|++||.|. .++++.++.+|.++|||||+|.+.++|.+|+..|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 344568999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCeeEEEEEeecCCCC
Q psy2983 182 AGRPMKVGTVTDRNES 197 (370)
Q Consensus 182 ~g~~l~V~~~~~~~~~ 197 (370)
.|+.|+|.++.++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999998876554
No 90
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.3e-18 Score=131.13 Aligned_cols=88 Identities=22% Similarity=0.389 Sum_probs=81.2
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPII 88 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~ 88 (370)
.....+.++|||+|||..+++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++ ++|..+.|+.|.
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999995 999999999999
Q ss_pred Eeccccccc
Q psy2983 89 VQPTQAEKN 97 (370)
Q Consensus 89 v~~~~~~~~ 97 (370)
|.++.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 2cqb_A 86 VNLAKPMRI 94 (102)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999876543
No 91
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=127.48 Aligned_cols=84 Identities=27% Similarity=0.430 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
.++++|||+|||..+++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|.+|++ ++|..+.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 467999999999999999999999999999999999999999999999999999999999997 9999999999999998
Q ss_pred ccccc
Q psy2983 93 QAEKN 97 (370)
Q Consensus 93 ~~~~~ 97 (370)
.....
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76543
No 92
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=3.7e-17 Score=129.28 Aligned_cols=86 Identities=31% Similarity=0.500 Sum_probs=80.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCCC
Q psy2983 191 VTDRNE 196 (370)
Q Consensus 191 ~~~~~~ 196 (370)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 877543
No 93
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=130.23 Aligned_cols=92 Identities=21% Similarity=0.429 Sum_probs=83.1
Q ss_pred CCCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeee-CCCCCeecEEEEEecCCCChHHHhh-c-cCCcc
Q psy2983 6 SDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITC-NKTRRFKGIAYIEFKDPESVPLAMG-L-NGQKL 82 (370)
Q Consensus 6 ~~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d-~~~~~~kg~afVeF~~~e~A~~Al~-l-~g~~i 82 (370)
+...++...+.++|||+|||..+++++|+++|+.||.|..|.++++ +.++.++|||||+|.+.++|.+|++ + ++..+
T Consensus 5 s~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 5 SSGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp CCCSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred CCcccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE
Confidence 3344556778899999999999999999999999999999999998 7889999999999999999999996 8 99999
Q ss_pred CCeeEEEeccccccc
Q psy2983 83 LGIPIIVQPTQAEKN 97 (370)
Q Consensus 83 ~g~~l~v~~~~~~~~ 97 (370)
.|+.|.|.++.....
T Consensus 85 ~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 85 YGRRLVLEWADSEVT 99 (107)
T ss_dssp SSCBCEEEECCCCCC
T ss_pred CCCEEEEEeCCCCCC
Confidence 999999999876543
No 94
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.7e-17 Score=127.46 Aligned_cols=87 Identities=24% Similarity=0.487 Sum_probs=80.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeec-CCCCCcccEEEEEECCHHHHHHHHHHh-CCceeCCeeEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVD-PDTGRSKGYGFITFHSADDAKKAQEQL-NGFELAGRPMKV 188 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l-~g~~i~g~~l~V 188 (370)
....++|||+|||..+++++|+++|++||.|..+.++.+ ..+|.++|||||+|.+.++|.+|+..| |+..+.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 345689999999999999999999999999999999998 779999999999999999999999999 999999999999
Q ss_pred EEeecCCCC
Q psy2983 189 GTVTDRNES 197 (370)
Q Consensus 189 ~~~~~~~~~ 197 (370)
.++.++...
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876554
No 95
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=1.1e-16 Score=124.99 Aligned_cols=85 Identities=29% Similarity=0.569 Sum_probs=79.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
..+.++|||+|||+.+++++|+++|++|| |..++++.++.+|.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34568999999999999999999999997 999999999989999999999999999999999 7999999999999999
Q ss_pred eecCCCC
Q psy2983 191 VTDRNES 197 (370)
Q Consensus 191 ~~~~~~~ 197 (370)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 8876554
No 96
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=1e-17 Score=131.53 Aligned_cols=91 Identities=26% Similarity=0.445 Sum_probs=82.8
Q ss_pred CCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCcc---
Q psy2983 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKL--- 82 (370)
Q Consensus 7 ~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i--- 82 (370)
...+....+.++|||+|||..+++++|+++|++||.|.+|.+++++.+++++|||||+|.+.++|.+|++ ++|..+
T Consensus 4 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 4 GSSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp CCCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 3445566788999999999999999999999999999999999999999999999999999999999996 999987
Q ss_pred CCeeEEEeccccccc
Q psy2983 83 LGIPIIVQPTQAEKN 97 (370)
Q Consensus 83 ~g~~l~v~~~~~~~~ 97 (370)
.|++|.|.++.....
T Consensus 84 ~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 84 MNRPIQVKPADSESR 98 (106)
T ss_dssp CSSCCEEEECCCCSC
T ss_pred CCceEEEEECCcccc
Confidence 899999999876543
No 97
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=6.7e-17 Score=126.64 Aligned_cols=85 Identities=31% Similarity=0.533 Sum_probs=79.3
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCC---eeEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG---RPMKV 188 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g---~~l~V 188 (370)
...++|||+|||+.+++++|+++|++||.|..+.+..++ +|.++|||||+|.+.++|.+|+..|||..+.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 456899999999999999999999999999999999997 89999999999999999999999999999998 99999
Q ss_pred EEeecCCCC
Q psy2983 189 GTVTDRNES 197 (370)
Q Consensus 189 ~~~~~~~~~ 197 (370)
.++.++...
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 998776543
No 98
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.2e-17 Score=128.57 Aligned_cols=87 Identities=29% Similarity=0.574 Sum_probs=81.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhC------CceeCCe
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLN------GFELAGR 184 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~------g~~i~g~ 184 (370)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|| +..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3456899999999999999999999999999999999999899999999999999999999999999 9999999
Q ss_pred eEEEEEeecCCCC
Q psy2983 185 PMKVGTVTDRNES 197 (370)
Q Consensus 185 ~l~V~~~~~~~~~ 197 (370)
.|+|.++.++...
T Consensus 92 ~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 92 QLKVDLAVTRDEA 104 (111)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCccC
Confidence 9999998876553
No 99
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=3.3e-17 Score=128.60 Aligned_cols=87 Identities=31% Similarity=0.535 Sum_probs=81.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCcee---CCeeEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL---AGRPMK 187 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i---~g~~l~ 187 (370)
....++|||+|||..+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|+..|||..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 44568999999999999999999999999999999999988999999999999999999999999999988 899999
Q ss_pred EEEeecCCCC
Q psy2983 188 VGTVTDRNES 197 (370)
Q Consensus 188 V~~~~~~~~~ 197 (370)
|.++.++...
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999876554
No 100
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=126.17 Aligned_cols=84 Identities=20% Similarity=0.308 Sum_probs=78.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
...+.+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred eecC
Q psy2983 191 VTDR 194 (370)
Q Consensus 191 ~~~~ 194 (370)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8654
No 101
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=127.52 Aligned_cols=84 Identities=27% Similarity=0.394 Sum_probs=78.1
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPII 88 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~ 88 (370)
.....+.++|||+|||..+++++|+++|++||+|.++.+++++.+++++|||||+|.+.++|.+|++ ++|..+.|++|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999995 999999999999
Q ss_pred Eeccc
Q psy2983 89 VQPTQ 93 (370)
Q Consensus 89 v~~~~ 93 (370)
|.+++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 98863
No 102
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=4e-17 Score=134.65 Aligned_cols=91 Identities=21% Similarity=0.433 Sum_probs=83.2
Q ss_pred CCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCee
Q psy2983 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIP 86 (370)
Q Consensus 8 ~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~ 86 (370)
...+.....++|||+|||.++++++|+++|+.||.|.+|.+++++.+++++|||||+|.+.++|.+|++ ++|..+.|+.
T Consensus 34 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 34 QMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp CSSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 344556778999999999999999999999999999999999999999999999999999999999996 9999999999
Q ss_pred EEEecccccccc
Q psy2983 87 IIVQPTQAEKNR 98 (370)
Q Consensus 87 l~v~~~~~~~~~ 98 (370)
|.|.++.....+
T Consensus 114 l~v~~a~~~~~~ 125 (139)
T 1u6f_A 114 LKVALAASGHQR 125 (139)
T ss_dssp EEEEESSCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999998765443
No 103
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=125.21 Aligned_cols=85 Identities=35% Similarity=0.652 Sum_probs=79.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||+.+++++|+++|++||.|..+.+..+ +|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345689999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2983 191 VTDRNES 197 (370)
Q Consensus 191 ~~~~~~~ 197 (370)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9876654
No 104
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=1.2e-17 Score=128.88 Aligned_cols=82 Identities=26% Similarity=0.350 Sum_probs=77.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEeccc
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~ 93 (370)
++++|||+|||..+++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++ ++|..+.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999999999999999999999999995 99999999999999987
Q ss_pred ccc
Q psy2983 94 AEK 96 (370)
Q Consensus 94 ~~~ 96 (370)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 105
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=9.9e-18 Score=132.59 Aligned_cols=89 Identities=19% Similarity=0.315 Sum_probs=81.7
Q ss_pred CCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCee
Q psy2983 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIP 86 (370)
Q Consensus 8 ~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~ 86 (370)
..+....+.++|||+|||..+++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++|..+.|++
T Consensus 18 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 18 PGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 344556678999999999999999999999999999999999999999999999999999999999996 9999999999
Q ss_pred EEEecccccc
Q psy2983 87 IIVQPTQAEK 96 (370)
Q Consensus 87 l~v~~~~~~~ 96 (370)
|.|.++....
T Consensus 98 l~V~~a~~~~ 107 (110)
T 1oo0_B 98 IQVDWCFVKG 107 (110)
T ss_dssp CEEEESEESS
T ss_pred EEEEEcccCC
Confidence 9999987543
No 106
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=4.2e-18 Score=129.82 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=71.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEeccc
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFFSSVG--KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f~~~G--~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~ 93 (370)
.+|||+|||.++|+++|+++|++|| .|.++++++++.+|+++|||||+|.+.++|.+|++ ++|..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999995 99999999999999887
Q ss_pred ccc
Q psy2983 94 AEK 96 (370)
Q Consensus 94 ~~~ 96 (370)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 107
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=124.05 Aligned_cols=83 Identities=31% Similarity=0.564 Sum_probs=77.2
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCC-cccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGR-SKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~-~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
.+++|||+|||.++++++|+++|++||.|..+.+..+..++. ++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357899999999999999999999999999999999877666 8999999999999999999999999999999999998
Q ss_pred ecCC
Q psy2983 192 TDRN 195 (370)
Q Consensus 192 ~~~~ 195 (370)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 108
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=127.62 Aligned_cols=85 Identities=25% Similarity=0.454 Sum_probs=79.7
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCcee-eEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCee----E
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKID-NIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRP----M 186 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~-~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~----l 186 (370)
...++|||+|||+.+++++|+++|++||.|. .++++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4568999999999999999999999999999 9999999889999999999999999999999999999999999 9
Q ss_pred EEEEeecCCC
Q psy2983 187 KVGTVTDRNE 196 (370)
Q Consensus 187 ~V~~~~~~~~ 196 (370)
+|.++.+...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999876544
No 109
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=127.96 Aligned_cols=84 Identities=20% Similarity=0.367 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCC---CCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEE
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNK---TRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV 89 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~---~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v 89 (370)
.+.++|||+|||.++++++|+++|+.||+|..+.+.+++. +++++|||||+|.+.++|.+|++ |+|..+.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4679999999999999999999999999999999999886 66899999999999999999997 9999999999999
Q ss_pred eccccccc
Q psy2983 90 QPTQAEKN 97 (370)
Q Consensus 90 ~~~~~~~~ 97 (370)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99876543
No 110
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=127.21 Aligned_cols=84 Identities=33% Similarity=0.535 Sum_probs=76.5
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeE
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPI 87 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l 87 (370)
.+....+.++|||+|||..+++++|+++|++||+|.++.+++++. ++++|||||+|.+.++|.+|++ ++|..+.|++|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 344566789999999999999999999999999999999999876 8999999999999999999997 99999999999
Q ss_pred EEeccc
Q psy2983 88 IVQPTQ 93 (370)
Q Consensus 88 ~v~~~~ 93 (370)
.|.+++
T Consensus 88 ~V~~a~ 93 (95)
T 2ywk_A 88 NVSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 998875
No 111
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=129.47 Aligned_cols=86 Identities=24% Similarity=0.414 Sum_probs=80.0
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh-hccCCccCCeeEEE
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGIPIIV 89 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~i~g~~l~v 89 (370)
....+.++|||+|||..+++++|+++|++||+|.++.+++++.++.++|||||+|.+.++|.+|+ .+++..+.|++|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999 59999999999999
Q ss_pred ecccccc
Q psy2983 90 QPTQAEK 96 (370)
Q Consensus 90 ~~~~~~~ 96 (370)
.++....
T Consensus 87 ~~a~~~~ 93 (102)
T 1x5s_A 87 DQAGKSS 93 (102)
T ss_dssp EEEECCC
T ss_pred EECCCCC
Confidence 9987543
No 112
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=6.4e-18 Score=131.46 Aligned_cols=81 Identities=25% Similarity=0.393 Sum_probs=77.5
Q ss_pred CceEEEecCCC------CCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCC-eeE
Q psy2983 114 PMRLYIGSLHF------NITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG-RPM 186 (370)
Q Consensus 114 ~~~l~V~nlp~------~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g-~~l 186 (370)
.++|||+|||. .+++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|.+|+..|||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 47899999999 99999999999999999999999999899999999999999999999999999999999 999
Q ss_pred EEEEeecC
Q psy2983 187 KVGTVTDR 194 (370)
Q Consensus 187 ~V~~~~~~ 194 (370)
+|.++.++
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99998664
No 113
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=1.7e-17 Score=132.96 Aligned_cols=82 Identities=23% Similarity=0.366 Sum_probs=77.2
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEE
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV 89 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v 89 (370)
....+.++|||+|||.++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|.+|++ ++|..+.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345677999999999999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred ecc
Q psy2983 90 QPT 92 (370)
Q Consensus 90 ~~~ 92 (370)
+++
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 876
No 114
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=6.1e-17 Score=122.39 Aligned_cols=80 Identities=28% Similarity=0.614 Sum_probs=74.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|+|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3456899999999999999999999999999999999998899999999999999999999997 688999999999987
Q ss_pred e
Q psy2983 191 V 191 (370)
Q Consensus 191 ~ 191 (370)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 115
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=1.3e-17 Score=131.80 Aligned_cols=89 Identities=19% Similarity=0.263 Sum_probs=75.3
Q ss_pred CCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCee
Q psy2983 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIP 86 (370)
Q Consensus 7 ~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~ 86 (370)
....+...+.++|||+|||.++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++..+..+.|+.
T Consensus 16 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~ 95 (109)
T 2rs2_A 16 PRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 95 (109)
T ss_dssp ----------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEE
T ss_pred ccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEE
Confidence 33445567889999999999999999999999999999999999999999999999999999999999986679999999
Q ss_pred EEEeccccc
Q psy2983 87 IIVQPTQAE 95 (370)
Q Consensus 87 l~v~~~~~~ 95 (370)
|.|.++...
T Consensus 96 l~V~~a~~~ 104 (109)
T 2rs2_A 96 IDPKVAFPR 104 (109)
T ss_dssp EEEEECCCC
T ss_pred EEEEEccCC
Confidence 999988754
No 116
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-16 Score=125.17 Aligned_cols=84 Identities=24% Similarity=0.534 Sum_probs=78.7
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCC-CCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT-GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
.++++|||+|||+.+++++|+++|++|| |..+.++.++.+ |.++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999999877 999999999999999999999 8999999999999999
Q ss_pred eecCCCC
Q psy2983 191 VTDRNES 197 (370)
Q Consensus 191 ~~~~~~~ 197 (370)
+.++...
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9876654
No 117
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=5.9e-17 Score=129.76 Aligned_cols=82 Identities=29% Similarity=0.508 Sum_probs=77.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||+++++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44568999999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred ee
Q psy2983 191 VT 192 (370)
Q Consensus 191 ~~ 192 (370)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 118
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=128.26 Aligned_cols=84 Identities=18% Similarity=0.287 Sum_probs=78.6
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCee-EEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCee---
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVR-DVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIP--- 86 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~-~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~--- 86 (370)
...++++|||+|||..+++++|+++|++||+|. ++++++++.+++++|||||+|.+.++|.+|++ |+|..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345789999999999999999999999999999 99999999999999999999999999999997 9999999999
Q ss_pred -EEEeccccc
Q psy2983 87 -IIVQPTQAE 95 (370)
Q Consensus 87 -l~v~~~~~~ 95 (370)
|+|.++...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999887654
No 119
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.6e-17 Score=126.24 Aligned_cols=88 Identities=19% Similarity=0.290 Sum_probs=80.2
Q ss_pred CCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeE
Q psy2983 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPI 87 (370)
Q Consensus 8 ~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l 87 (370)
.......+.++|||+|||..+++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|.+|++ ++..+.|+.|
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l 85 (103)
T 2cqg_A 7 GVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWC 85 (103)
T ss_dssp SCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEE
T ss_pred CCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEE
Confidence 344556778999999999999999999999999999999999999999999999999999999999998 5778999999
Q ss_pred EEecccccc
Q psy2983 88 IVQPTQAEK 96 (370)
Q Consensus 88 ~v~~~~~~~ 96 (370)
.|.++....
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cqg_A 86 DCKLPNSKQ 94 (103)
T ss_dssp EEECCCTTC
T ss_pred EEEecCCCC
Confidence 999987653
No 120
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=7.4e-18 Score=123.76 Aligned_cols=75 Identities=21% Similarity=0.371 Sum_probs=72.2
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEecc
Q psy2983 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92 (370)
Q Consensus 18 ~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~ 92 (370)
+|||+|||.++++++|+++|++||+|.++.+++++.+++++|||||+|.+.++|.+|++++|..+.|++|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999998999999999999999999999999999999999999864
No 121
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.5e-17 Score=127.23 Aligned_cols=88 Identities=20% Similarity=0.418 Sum_probs=79.3
Q ss_pred CCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCe
Q psy2983 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGI 85 (370)
Q Consensus 7 ~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~ 85 (370)
........+.++|||+|||..+++++|+++|++||.|.+|.+++++.+ ++|||||+|.+.++|.+|++ ++|..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cqi_A 6 SGMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGK 83 (103)
T ss_dssp CCCCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCC
Confidence 344556778899999999999999999999999999999999998643 68999999999999999997 999999999
Q ss_pred eEEEecccccc
Q psy2983 86 PIIVQPTQAEK 96 (370)
Q Consensus 86 ~l~v~~~~~~~ 96 (370)
+|.|.++....
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2cqi_A 84 EVKVNWATTPS 94 (103)
T ss_dssp EEEEEECCCTT
T ss_pred eEEEEECCCCc
Confidence 99999987654
No 122
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.1e-17 Score=128.60 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=80.1
Q ss_pred CCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCee
Q psy2983 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIP 86 (370)
Q Consensus 8 ~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~ 86 (370)
..+....+.++|||+|||..+++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++ +++ .+.|++
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 345566788999999999999999999999999999999999999999999999999999999999996 777 899999
Q ss_pred EEEeccccc
Q psy2983 87 IIVQPTQAE 95 (370)
Q Consensus 87 l~v~~~~~~ 95 (370)
|.|.++...
T Consensus 88 l~V~~a~~~ 96 (116)
T 2cqd_A 88 ANVNLAYLG 96 (116)
T ss_dssp CEEEESTTT
T ss_pred EEEEEcccC
Confidence 999998654
No 123
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=5.9e-17 Score=123.75 Aligned_cols=84 Identities=27% Similarity=0.553 Sum_probs=78.2
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
.+.++|||+|||..+++++|+++|++||.|..+.+..+ +|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999875 8999999999999999999999999999999999999998
Q ss_pred ecCCCC
Q psy2983 192 TDRNES 197 (370)
Q Consensus 192 ~~~~~~ 197 (370)
.+....
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 776553
No 124
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-17 Score=127.75 Aligned_cols=83 Identities=27% Similarity=0.366 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEE-EEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDV-RLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v-~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
.+.++|||+|||..+++++|+++|+.||.|.++ .+++++.++.++|||||+|.+.++|.+|++ ++|..+.|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999999 999998999999999999999999999997 999999999999999
Q ss_pred ccccc
Q psy2983 92 TQAEK 96 (370)
Q Consensus 92 ~~~~~ 96 (370)
+....
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 87654
No 125
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=6.9e-18 Score=131.30 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCC------CCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCC-e
Q psy2983 14 RDARTIFCMQLSQ------RIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLG-I 85 (370)
Q Consensus 14 ~~~r~v~V~nLp~------~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g-~ 85 (370)
..+++|||+|||. ++++++|+++|++||+|.++.+++++.+++++|||||+|.+.++|.+|++ ++|..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4568999999999 99999999999999999999999999999999999999999999999995 99999999 9
Q ss_pred eEEEeccccc
Q psy2983 86 PIIVQPTQAE 95 (370)
Q Consensus 86 ~l~v~~~~~~ 95 (370)
+|.|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999988653
No 126
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=5.5e-18 Score=135.20 Aligned_cols=103 Identities=19% Similarity=0.331 Sum_probs=91.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
..+++|||+|||..+++++|+++|+.||.|.++.++++ +.++|||||+|.+.++|.+|++ ++|..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 46789999999999999999999999999999999876 4458999999999999999997 9999999999999998
Q ss_pred cccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCc
Q psy2983 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGK 140 (370)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~ 140 (370)
...... .+++...++++|.++|++||.
T Consensus 83 ~~~~~~---------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF---------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT---------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh---------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 765332 456677889999999999984
No 127
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=127.35 Aligned_cols=87 Identities=21% Similarity=0.369 Sum_probs=79.4
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeE
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPI 87 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l 87 (370)
......+.++|||+|||..+++++|+++|+.||.|.++.++++ ++.++|||||+|.+.++|.+|++ |+|..+.|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3344568899999999999999999999999999999999998 78999999999999999999996 99999999999
Q ss_pred EEeccccccc
Q psy2983 88 IVQPTQAEKN 97 (370)
Q Consensus 88 ~v~~~~~~~~ 97 (370)
.|.++.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2d9p_A 86 YVALAQRKEE 95 (103)
T ss_dssp EEEECSSCCC
T ss_pred EEEEeccccc
Confidence 9999876544
No 128
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.2e-17 Score=128.37 Aligned_cols=86 Identities=27% Similarity=0.395 Sum_probs=79.3
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCC-CCeecEEEEEecCCCChHHHhhccCCccCCeeEEE
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKT-RRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIV 89 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~-~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v 89 (370)
....+.++|||+|||..+++++|+++|+.|| |.+|.+++++.+ ++++|||||+|.+.++|.+|+.+++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRV 88 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEE
Confidence 3445779999999999999999999999999 999999999987 89999999999999999999999999999999999
Q ss_pred eccccccc
Q psy2983 90 QPTQAEKN 97 (370)
Q Consensus 90 ~~~~~~~~ 97 (370)
.++.....
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99876543
No 129
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.6e-18 Score=131.79 Aligned_cols=85 Identities=31% Similarity=0.499 Sum_probs=79.5
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEe
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQ 90 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~ 90 (370)
...+.++|||+|||..+++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++ ++|..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999996 99999999999999
Q ss_pred cccccc
Q psy2983 91 PTQAEK 96 (370)
Q Consensus 91 ~~~~~~ 96 (370)
++....
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 987544
No 130
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=1.7e-17 Score=135.18 Aligned_cols=87 Identities=26% Similarity=0.368 Sum_probs=80.6
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPII 88 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~ 88 (370)
.....+.++|||+|||..+++++|+++|++||+|.+|.+++++.+++++|||||+|.+.++|.+|++ ++|..|.|++|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999996 999999999999
Q ss_pred Eecccccc
Q psy2983 89 VQPTQAEK 96 (370)
Q Consensus 89 v~~~~~~~ 96 (370)
|.++....
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99987543
No 131
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=9.5e-18 Score=130.61 Aligned_cols=99 Identities=24% Similarity=0.348 Sum_probs=82.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEeccccc
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAE 95 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~~~ 95 (370)
++|||+|||.++|+++|+++|++||+|.++.++++ ++|||||+|.+.++|.+|++ ++|..+.|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999886 58999999999999999996 9999999999999998765
Q ss_pred ccccCCCCCCCCCCCCCCCceEEEecCC
Q psy2983 96 KNRAGNTLPNLQPRGTGGPMRLYIGSLH 123 (370)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~V~nlp 123 (370)
........ .+.......+||||||+
T Consensus 76 ~~~~~~~~---~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDR---PPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCS---CCCSCCCCSCCCSCCCC
T ss_pred CCcccCCC---CCccccCCCceecCCCC
Confidence 43322111 11122345689999997
No 132
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=1.1e-16 Score=125.87 Aligned_cols=81 Identities=32% Similarity=0.550 Sum_probs=77.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
..+.++|||+|||+.+++++|+++|++||.|..+.++.+. +|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4556899999999999999999999999999999999998 999999999999999999999999999999999999998
Q ss_pred ee
Q psy2983 191 VT 192 (370)
Q Consensus 191 ~~ 192 (370)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 133
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=6.2e-17 Score=124.40 Aligned_cols=82 Identities=26% Similarity=0.555 Sum_probs=76.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||+.+++++|+++|++||.|..+++..++ +|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 3456899999999999999999999999999999999997 499999999999999999999999999999999999998
Q ss_pred eec
Q psy2983 191 VTD 193 (370)
Q Consensus 191 ~~~ 193 (370)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 134
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=7e-17 Score=129.07 Aligned_cols=85 Identities=35% Similarity=0.636 Sum_probs=79.8
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
..+++|||+|||.++++++|+++|++||.|..+.+..+. +|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 445799999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2983 192 TDRNES 197 (370)
Q Consensus 192 ~~~~~~ 197 (370)
.++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876554
No 135
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-17 Score=124.80 Aligned_cols=80 Identities=31% Similarity=0.505 Sum_probs=75.5
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
.++++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999988764
No 136
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=6.1e-17 Score=122.80 Aligned_cols=80 Identities=21% Similarity=0.498 Sum_probs=76.2
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
.++|||+|||+.+++++|+++|++||.|..+++..++.+|.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 368999999999999999999999999999999999889999999999999999999999 8999999999999999765
Q ss_pred C
Q psy2983 194 R 194 (370)
Q Consensus 194 ~ 194 (370)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 137
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=127.05 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=78.9
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPII 88 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~ 88 (370)
.+..+..++|||+|||..+++++|+++|+.||.|.++.+++++ +++++|||||+|.+.++|.+|++ |+|..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 4455678999999999999999999999999999999999987 58999999999999999999997 999999999999
Q ss_pred Eecccccc
Q psy2983 89 VQPTQAEK 96 (370)
Q Consensus 89 v~~~~~~~ 96 (370)
|.++....
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 99886543
No 138
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-17 Score=132.12 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=79.5
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCe-eEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKV-RDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPII 88 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v-~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~ 88 (370)
.....+.++|||+|||.++|+++|+++|+.||.| .+|.+++++ +++++|||||+|.+.++|.+|+++++..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 87 (114)
T 2cpy_A 9 GDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAF 87 (114)
T ss_dssp CSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEE
T ss_pred CCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEE
Confidence 3456678999999999999999999999999999 899999998 89999999999999999999998899999999999
Q ss_pred Eecccccc
Q psy2983 89 VQPTQAEK 96 (370)
Q Consensus 89 v~~~~~~~ 96 (370)
|.++....
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99887554
No 139
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.3e-16 Score=122.27 Aligned_cols=85 Identities=34% Similarity=0.658 Sum_probs=77.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||+.+++++|+++|++||.|..++++.+. +.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999885 34899999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2983 191 VTDRNES 197 (370)
Q Consensus 191 ~~~~~~~ 197 (370)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876554
No 140
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=5.8e-17 Score=132.01 Aligned_cols=85 Identities=33% Similarity=0.575 Sum_probs=80.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
..+.++|||+|||+.+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|+..|+|..|.|+.|+|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCC
Q psy2983 191 VTDRN 195 (370)
Q Consensus 191 ~~~~~ 195 (370)
+.++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 87654
No 141
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=4.5e-17 Score=125.19 Aligned_cols=81 Identities=21% Similarity=0.346 Sum_probs=75.7
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
.++.+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34589999999999999999999999999999999998889999999999999999999999999999999999999886
Q ss_pred e
Q psy2983 192 T 192 (370)
Q Consensus 192 ~ 192 (370)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 142
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.5e-17 Score=130.05 Aligned_cols=88 Identities=23% Similarity=0.432 Sum_probs=81.1
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCee--------EEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCC
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVR--------DVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQ 80 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~--------~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~ 80 (370)
+....+.++|||+|||..+++++|+++|+.||.|. .+.++.++.+++++|||||+|.+.++|.+|++ |+|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34567889999999999999999999999999999 69999999999999999999999999999996 9999
Q ss_pred ccCCeeEEEeccccccc
Q psy2983 81 KLLGIPIIVQPTQAEKN 97 (370)
Q Consensus 81 ~i~g~~l~v~~~~~~~~ 97 (370)
.|.|+.|.|.++.....
T Consensus 89 ~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPP 105 (113)
T ss_dssp EETTEECEEECSSCCCC
T ss_pred ccCCCEEEEEECCCCCC
Confidence 99999999999876543
No 143
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=4.8e-17 Score=126.82 Aligned_cols=85 Identities=21% Similarity=0.377 Sum_probs=78.5
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEE
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPII 88 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~ 88 (370)
+++....+++|||+|||..+++++|+++|+.||.|.++.+++++ +++++|||||+|.+.++|.+|++ ++..++|+.|.
T Consensus 2 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~ 79 (102)
T 2xs2_A 2 LPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLK 79 (102)
T ss_dssp CCCCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEE
Confidence 34556678999999999999999999999999999999999998 89999999999999999999999 99999999999
Q ss_pred Eeccccc
Q psy2983 89 VQPTQAE 95 (370)
Q Consensus 89 v~~~~~~ 95 (370)
|.++...
T Consensus 80 v~~a~~~ 86 (102)
T 2xs2_A 80 LGPAIRK 86 (102)
T ss_dssp EEEEEEC
T ss_pred EEECCcC
Confidence 9887654
No 144
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.8e-17 Score=131.27 Aligned_cols=87 Identities=20% Similarity=0.328 Sum_probs=80.1
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEe
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQ 90 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~ 90 (370)
....+.++|||+|||..+++++|+++|+.||.|..|.+++++.+++++|||||+|.+.++|.+|++.++..|.|+.|.|.
T Consensus 22 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 22 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPK 101 (116)
T ss_dssp CHHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEE
Confidence 33456699999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred ccccccc
Q psy2983 91 PTQAEKN 97 (370)
Q Consensus 91 ~~~~~~~ 97 (370)
++.....
T Consensus 102 ~a~~~~~ 108 (116)
T 1x4b_A 102 RAVAREE 108 (116)
T ss_dssp CCSSCCC
T ss_pred ECCCCcc
Confidence 9876543
No 145
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=2.2e-16 Score=145.60 Aligned_cols=81 Identities=26% Similarity=0.502 Sum_probs=73.9
Q ss_pred CCCceEEEecCCCCCCHHHHH----hcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLR----GIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~----~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 187 (370)
.+.++|||+|||+.+++++|+ ++|++||.|..|++.+ +|+++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 446899999999999999977 8999999999998874 788999999999999999999999999999999999
Q ss_pred EEEeecCC
Q psy2983 188 VGTVTDRN 195 (370)
Q Consensus 188 V~~~~~~~ 195 (370)
|.++....
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99986543
No 146
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=5.5e-17 Score=129.70 Aligned_cols=84 Identities=25% Similarity=0.417 Sum_probs=78.1
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
..+.++|||+|||.++++++|+++|+.||.|.+|.++.+. +++++|||||+|.+.++|.+|++ ++|..+.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567999999999999999999999999999999999998 89999999999999999999996 999999999999999
Q ss_pred cccccc
Q psy2983 92 TQAEKN 97 (370)
Q Consensus 92 ~~~~~~ 97 (370)
+.....
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 876543
No 147
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=8.2e-17 Score=126.13 Aligned_cols=84 Identities=18% Similarity=0.368 Sum_probs=77.7
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCC---eeEE
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLG---IPII 88 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g---~~l~ 88 (370)
..+.++|||+|||..+++++|+++|+.||.|.++.+++++ ++.++|||||+|.+.++|.+|++ |+|..+.| ++|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3568999999999999999999999999999999999987 79999999999999999999996 99999998 9999
Q ss_pred Eeccccccc
Q psy2983 89 VQPTQAEKN 97 (370)
Q Consensus 89 v~~~~~~~~ 97 (370)
|.++.....
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999876543
No 148
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=2.3e-17 Score=124.81 Aligned_cols=82 Identities=22% Similarity=0.408 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCC-eecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRR-FKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~-~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
...++|||+|||.++++++|+++|++||.|.++.++.+..++. ++|||||+|.+.++|.+|++ ++|..+.|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999987766 89999999999999999997 999999999999998
Q ss_pred cccc
Q psy2983 92 TQAE 95 (370)
Q Consensus 92 ~~~~ 95 (370)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 7643
No 149
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.8e-16 Score=122.68 Aligned_cols=85 Identities=26% Similarity=0.489 Sum_probs=77.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||+.+++++|+++|++||.|..++++.+. +.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456899999999999999999999999999999999885 33689999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2983 191 VTDRNES 197 (370)
Q Consensus 191 ~~~~~~~ 197 (370)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9876554
No 150
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=5.6e-17 Score=136.46 Aligned_cols=82 Identities=24% Similarity=0.417 Sum_probs=77.1
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCC--ceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFG--KIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G--~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
..++|||+|||+.+++++|+++|++|| .|..++++.|+.+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q psy2983 191 VTDR 194 (370)
Q Consensus 191 ~~~~ 194 (370)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8653
No 151
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=6.2e-17 Score=126.59 Aligned_cols=85 Identities=19% Similarity=0.258 Sum_probs=78.7
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhc-CCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCc-cCCeeEE
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSS-VGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQK-LLGIPII 88 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~-~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~-i~g~~l~ 88 (370)
...+.++|||+|||.++|+++|+++|+. ||.|.++.+++++ +++++|||||+|.+.++|.+|++ ++|.. +.|++|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3457799999999999999999999999 9999999999998 89999999999999999999996 99999 9999999
Q ss_pred Eeccccccc
Q psy2983 89 VQPTQAEKN 97 (370)
Q Consensus 89 v~~~~~~~~ 97 (370)
|.++.....
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999865543
No 152
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=126.19 Aligned_cols=85 Identities=29% Similarity=0.536 Sum_probs=79.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||+.+++++|+++|++||.|..++++.++.++.++|||||+|.+.++|.+|+..+++ .+.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 44568999999999999999999999999999999999988999999999999999999999999998 89999999999
Q ss_pred eecCCC
Q psy2983 191 VTDRNE 196 (370)
Q Consensus 191 ~~~~~~ 196 (370)
+.....
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 866544
No 153
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.69 E-value=7.2e-18 Score=131.16 Aligned_cols=87 Identities=26% Similarity=0.366 Sum_probs=74.3
Q ss_pred CCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeC-CCCCeecEEEEEecCCCChHHHhhccCCccCCee
Q psy2983 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCN-KTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIP 86 (370)
Q Consensus 8 ~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~-~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~ 86 (370)
..+......++|||+|||.++++++|+++|+.|| |.++.+++++ .+++++|||||+|.+.++|.+|++++|..+.|+.
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~ 89 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR 89 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE
Confidence 3445567889999999999999999999999999 9999999998 5899999999999999999999999999999999
Q ss_pred EEEeccccc
Q psy2983 87 IIVQPTQAE 95 (370)
Q Consensus 87 l~v~~~~~~ 95 (370)
|.|.++...
T Consensus 90 l~V~~a~~~ 98 (100)
T 2j76_E 90 IRVDVADQA 98 (100)
T ss_dssp CCCEECCCS
T ss_pred EEEEeccCC
Confidence 999987643
No 154
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=122.97 Aligned_cols=82 Identities=16% Similarity=0.336 Sum_probs=75.6
Q ss_pred CCCceEEEecCCCCCCHHHHH----hcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLR----GIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~----~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 187 (370)
....+|||+|||+.+++++|+ ++|++||.|.+++++.++.+ +|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345799999999999999999 99999999999999988654 88999999999999999999999999999999
Q ss_pred EEEeecCCC
Q psy2983 188 VGTVTDRNE 196 (370)
Q Consensus 188 V~~~~~~~~ 196 (370)
|.++.++..
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999877654
No 155
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=2.4e-17 Score=134.74 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=81.0
Q ss_pred CCCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeE--EEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCC--
Q psy2983 6 SDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRD--VRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQ-- 80 (370)
Q Consensus 6 ~~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~--v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~-- 80 (370)
+...+......++|||+|||..+|+++|+++|++||.|.. |++++|+.+++++|||||+|.+. +|.+|+. ++|.
T Consensus 13 ~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~ 91 (131)
T 2m2b_A 13 QGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHP 91 (131)
T ss_dssp CCCCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCC
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCC
Confidence 3344555678899999999999999999999999999976 99999999999999999999999 9999995 9999
Q ss_pred --ccCCeeEEEecccccc
Q psy2983 81 --KLLGIPIIVQPTQAEK 96 (370)
Q Consensus 81 --~i~g~~l~v~~~~~~~ 96 (370)
.+.|+.|.|.++....
T Consensus 92 ~~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 92 PLTIDGKTINVEFAKGSK 109 (131)
T ss_dssp SCCGGGCCCCCEECCCSC
T ss_pred CccCCCEEEEEEECCCCC
Confidence 9999999999887643
No 156
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=124.96 Aligned_cols=89 Identities=24% Similarity=0.383 Sum_probs=79.4
Q ss_pred CCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCe
Q psy2983 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGI 85 (370)
Q Consensus 7 ~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~ 85 (370)
...++...+.++|||+|||..+++++|+++|+.||.|.+|.++++.. .++|||||+|.+.++|.+|++ ++|..|.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 6 SGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34455667889999999999999999999999999999999998864 378999999999999999996 999999999
Q ss_pred eEEEeccccccc
Q psy2983 86 PIIVQPTQAEKN 97 (370)
Q Consensus 86 ~l~v~~~~~~~~ 97 (370)
.|.|.++.....
T Consensus 84 ~l~v~~a~~~~~ 95 (103)
T 2cq3_A 84 KIEVNNATARVM 95 (103)
T ss_dssp ECEEEECCSSCC
T ss_pred EEEEEEcccCCC
Confidence 999999876543
No 157
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.69 E-value=2.4e-17 Score=161.08 Aligned_cols=165 Identities=21% Similarity=0.352 Sum_probs=111.6
Q ss_pred HHHHHhhcCCCeeEEEEe----eeC-CCCCeecEE--EEEecCCCChHHHhh-ccCCccCCeeEE--Eeccccc--cccc
Q psy2983 32 DLEEFFSSVGKVRDVRLI----TCN-KTRRFKGIA--YIEFKDPESVPLAMG-LNGQKLLGIPII--VQPTQAE--KNRA 99 (370)
Q Consensus 32 ~L~~~f~~~G~v~~v~i~----~d~-~~~~~kg~a--fVeF~~~e~A~~Al~-l~g~~i~g~~l~--v~~~~~~--~~~~ 99 (370)
.|.++|.++|+|..+..+ .+. .+....|++ |++|....++..++. .+.....++.-. ....... ....
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 378999999999877332 222 122223344 888888777665552 222221111000 0000000 0000
Q ss_pred CCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCc
Q psy2983 100 GNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGF 179 (370)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 179 (370)
.............+..+|||+|||+.+|+++|+++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|||.
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 00000111112334579999999999999999999999999999999999889999999999999999999999999999
Q ss_pred eeCCeeEEEEEeecCCC
Q psy2983 180 ELAGRPMKVGTVTDRNE 196 (370)
Q Consensus 180 ~i~g~~l~V~~~~~~~~ 196 (370)
.|.|+.|.|.++.+...
T Consensus 168 ~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 168 KIDGRRVLVDVERGRTV 184 (437)
T ss_pred EECCEEEEEEEeCCCCC
Confidence 99999999999876543
No 158
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=125.36 Aligned_cols=86 Identities=24% Similarity=0.500 Sum_probs=80.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+.. ++..+.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44568999999999999999999999999999999999988999999999999999999999998 99999999999999
Q ss_pred eecCCCC
Q psy2983 191 VTDRNES 197 (370)
Q Consensus 191 ~~~~~~~ 197 (370)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 8876654
No 159
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.69 E-value=2.3e-16 Score=144.04 Aligned_cols=131 Identities=27% Similarity=0.454 Sum_probs=114.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||+++|+++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345679999999999999999999999999999998643 79999999999999999999999999999999999
Q ss_pred eecCCC-CcCCCCCCCCHHHHHHhcccCCceeeeeeeecc---ccCCC---CCChHHHHHHHhh
Q psy2983 191 VTDRNE-SVGGGPSNLDTDEMERAGVDLGATGRLQLMFKL---AEGTG---LELPPAAASALNL 247 (370)
Q Consensus 191 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~---~~~~~---~~~~~~a~~a~~~ 247 (370)
+.+... .+++++..+++++++..|..+|.+..+.++.+. ++|++ |..+.+|..|+..
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 876443 578999999999999999999999999988772 23444 6778888777764
No 160
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=131.10 Aligned_cols=88 Identities=28% Similarity=0.563 Sum_probs=81.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q psy2983 110 GTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189 (370)
Q Consensus 110 ~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~ 189 (370)
.....++|||+|||..+++++|+++|+.||.|..++++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q psy2983 190 TVTDRNES 197 (370)
Q Consensus 190 ~~~~~~~~ 197 (370)
++.++...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 98876554
No 161
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4e-17 Score=127.55 Aligned_cols=79 Identities=25% Similarity=0.257 Sum_probs=74.5
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
..++|||+|||+++|+++|+++|++||.|..+.++.++. |.++|||||+|.+.++|.+|+. ++|..+.|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 357899999999999999999999999999999999986 9999999999999999999999 89999999999999865
Q ss_pred c
Q psy2983 193 D 193 (370)
Q Consensus 193 ~ 193 (370)
+
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 162
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.68 E-value=4.3e-17 Score=137.13 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVG--KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G--~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
..++|||+|||..+|+++|+++|+.|| .|.+|++++|+.+|+++|||||+|.+.++|.+|++ |+|..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 99999999999999999999999999999999996 899999999999998
Q ss_pred ccc
Q psy2983 92 TQA 94 (370)
Q Consensus 92 ~~~ 94 (370)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 163
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4e-17 Score=127.42 Aligned_cols=82 Identities=18% Similarity=0.224 Sum_probs=75.2
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEec
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQP 91 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~ 91 (370)
.....++|||+|||+++|+++|+++|++||.+ +|.+++++ +++++|||||+|.+.++|.+|+++++..+.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 44677899999999999999999999999955 99999998 89999999999999999999999999999999999987
Q ss_pred cccc
Q psy2983 92 TQAE 95 (370)
Q Consensus 92 ~~~~ 95 (370)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 6543
No 164
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=3.2e-16 Score=126.67 Aligned_cols=86 Identities=28% Similarity=0.501 Sum_probs=80.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||..+++++|+++|++||.|..+.+..+. +|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4456899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2983 191 VTDRNES 197 (370)
Q Consensus 191 ~~~~~~~ 197 (370)
+.+....
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 8775543
No 165
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.6e-17 Score=129.14 Aligned_cols=82 Identities=23% Similarity=0.410 Sum_probs=77.2
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
..++|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3478999999999999999999999999999999999888999999999999999999999 899999999999999986
Q ss_pred cCC
Q psy2983 193 DRN 195 (370)
Q Consensus 193 ~~~ 195 (370)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 543
No 166
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=5.2e-17 Score=130.21 Aligned_cols=85 Identities=21% Similarity=0.272 Sum_probs=78.5
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCee
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGK---VRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIP 86 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~---v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~ 86 (370)
.+...+.++|||+|||.++|+++|+++|+.||. |.+|++++++. ++++|||||+|.+.++|.+|+++++..|.|+.
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 89 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRY 89 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 344567899999999999999999999999999 89999999987 99999999999999999999999999999999
Q ss_pred EEEeccccc
Q psy2983 87 IIVQPTQAE 95 (370)
Q Consensus 87 l~v~~~~~~ 95 (370)
|.|.++...
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999887644
No 167
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=3.9e-17 Score=127.00 Aligned_cols=83 Identities=25% Similarity=0.542 Sum_probs=75.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecC-CCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDP-DTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~ 189 (370)
....++|||+|||..+++++|+++|++|| |..++++.++ .+|+++|||||+|.+.++|.+|+ .|+|..+.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 9999999997 58999999999999999999999 799999999999999
Q ss_pred EeecCC
Q psy2983 190 TVTDRN 195 (370)
Q Consensus 190 ~~~~~~ 195 (370)
++.++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 987653
No 168
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=1.2e-16 Score=129.50 Aligned_cols=87 Identities=31% Similarity=0.512 Sum_probs=81.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2983 191 VTDRNES 197 (370)
Q Consensus 191 ~~~~~~~ 197 (370)
+.++...
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9876554
No 169
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=124.85 Aligned_cols=85 Identities=26% Similarity=0.527 Sum_probs=79.4
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccC-CCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCce-eCCeeEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEP-FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE-LAGRPMKVG 189 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~-~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-i~g~~l~V~ 189 (370)
....+|||+|||+.+++++|+++|++ ||.|..+.++.+. +|.++|||||+|.+.++|.+|+..|||.. +.|+.|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34578999999999999999999999 9999999999998 99999999999999999999999999999 999999999
Q ss_pred EeecCCCC
Q psy2983 190 TVTDRNES 197 (370)
Q Consensus 190 ~~~~~~~~ 197 (370)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 98766554
No 170
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.68 E-value=4e-17 Score=139.58 Aligned_cols=133 Identities=23% Similarity=0.335 Sum_probs=109.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||..+++++|+++|+.||.+.. .++.+..+|.++|||||+|.+.++|.+|++ |+|..+.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 345689999999999999999999999998776 334444588999999999999999999995 999999999999999
Q ss_pred eecCCC---------CcCCCCCCCCHHHHHHhcccCCceeeeeeeeccccCCC---CCChHHHHHHHh
Q psy2983 191 VTDRNE---------SVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTG---LELPPAAASALN 246 (370)
Q Consensus 191 ~~~~~~---------~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~---~~~~~~a~~a~~ 246 (370)
+.++.. .+++++..+++++|+..|..+|.+..+ .....+++++ |..+.+|..|+.
T Consensus 88 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 88 PKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp CCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred CCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHH
Confidence 875433 267899999999999999999988665 1112344554 678888888877
No 171
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=125.55 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=75.7
Q ss_pred CCcccCCCCeEEEcCCCCCC------cHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCc
Q psy2983 9 LSPEERDARTIFCMQLSQRI------RTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQK 81 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~------te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~ 81 (370)
++.....+++|||+|||..+ ++++|+++|++||.|.++.++ +.+|+++|||||+|.+.++|.+|++ |+|..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 85 (105)
T 2nlw_A 8 PQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYK 85 (105)
T ss_dssp CCSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEE
T ss_pred CCCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcc
Confidence 34455668999999999999 889999999999999999988 4678999999999999999999996 99999
Q ss_pred cCCe-eEEEecccc
Q psy2983 82 LLGI-PIIVQPTQA 94 (370)
Q Consensus 82 i~g~-~l~v~~~~~ 94 (370)
+.|+ +|.|.++..
T Consensus 86 ~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 86 LDKQHTFRVNLFTD 99 (105)
T ss_dssp CSTTCEEEEECSCC
T ss_pred cCCCceEEEEEcch
Confidence 9998 999998764
No 172
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.68 E-value=2.8e-17 Score=120.65 Aligned_cols=75 Identities=33% Similarity=0.636 Sum_probs=72.0
Q ss_pred eEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 116 ~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++ |+|..+.|++|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 9999999999999864
No 173
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.9e-16 Score=119.71 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=76.3
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
....+|||+|||+.+++++|+++|++| .|..++++.+ .+|.++|||||+|.+.++|.+|+. |||..+.|+.|+|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 446799999999999999999999999 9999999999 699999999999999999999999 9999999999999998
Q ss_pred ecCC
Q psy2983 192 TDRN 195 (370)
Q Consensus 192 ~~~~ 195 (370)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7764
No 174
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1e-17 Score=126.10 Aligned_cols=80 Identities=16% Similarity=0.283 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
.+.++|||+|||..+++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|.+|++ ++|..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 467999999999999999999999999999999999999999999999999999999999996 9999999999988765
Q ss_pred c
Q psy2983 93 Q 93 (370)
Q Consensus 93 ~ 93 (370)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 175
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=4.4e-17 Score=132.08 Aligned_cols=89 Identities=22% Similarity=0.380 Sum_probs=81.7
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeE
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPI 87 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l 87 (370)
.++...+.++|||+|||..+|+++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|++ |+|..|.|+.|
T Consensus 15 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 15 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 34556678899999999999999999999999999999999999899999999999999999999995 99999999999
Q ss_pred EEeccccccc
Q psy2983 88 IVQPTQAEKN 97 (370)
Q Consensus 88 ~v~~~~~~~~ 97 (370)
.|.++.....
T Consensus 95 ~v~~a~~~~~ 104 (126)
T 3ex7_B 95 SVDWCFVRGP 104 (126)
T ss_dssp EEEESEESSS
T ss_pred EEEEecCCCC
Confidence 9999876543
No 176
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5e-16 Score=121.23 Aligned_cols=85 Identities=25% Similarity=0.389 Sum_probs=78.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+. ++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4456789999999999999999999999999999999998899999999999999999999998 57899999999999
Q ss_pred eecCCCC
Q psy2983 191 VTDRNES 197 (370)
Q Consensus 191 ~~~~~~~ 197 (370)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9876554
No 177
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=6.3e-16 Score=122.92 Aligned_cols=84 Identities=24% Similarity=0.377 Sum_probs=77.9
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
...++|||+|||+.+++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 345799999999999999999999999999999999997 6999999999999999999999999999999999999998
Q ss_pred ecCCC
Q psy2983 192 TDRNE 196 (370)
Q Consensus 192 ~~~~~ 196 (370)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 65433
No 178
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.68 E-value=7.5e-17 Score=126.81 Aligned_cols=82 Identities=21% Similarity=0.310 Sum_probs=76.8
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEE
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV 89 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v 89 (370)
+...+.++|||+|||..+++++|+++|+.||.|.++.++++. +++++|||||+|.+.++|.+|++ |+|..+.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 445678999999999999999999999999999999999998 89999999999999999999997 9999999999999
Q ss_pred eccc
Q psy2983 90 QPTQ 93 (370)
Q Consensus 90 ~~~~ 93 (370)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8764
No 179
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=1.8e-17 Score=121.64 Aligned_cols=75 Identities=25% Similarity=0.359 Sum_probs=71.6
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEecc
Q psy2983 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92 (370)
Q Consensus 18 ~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~ 92 (370)
+|||+|||.++++++|+++|++||+|.++.+++++.+++++|||||+|.+.++|.+|+++++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999988763
No 180
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.7e-17 Score=125.92 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=77.2
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRD-VRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPII 88 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~-v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~ 88 (370)
.+.....++|||+|||..+|+++|+++|++||.|.+ |.++.+ .+++++|||||+|.+.++|.+|++.++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~ 87 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE 87 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEE
Confidence 344567899999999999999999999999999987 888888 789999999999999999999998899999999999
Q ss_pred Eeccccc
Q psy2983 89 VQPTQAE 95 (370)
Q Consensus 89 v~~~~~~ 95 (370)
|.++...
T Consensus 88 v~~~~~~ 94 (104)
T 1wg5_A 88 IFKSSRA 94 (104)
T ss_dssp EEEECTT
T ss_pred EEECCHH
Confidence 9887543
No 181
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=1.7e-16 Score=125.30 Aligned_cols=85 Identities=29% Similarity=0.527 Sum_probs=76.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..+ +..+.|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345679999999999999999999999999999999999889999999999999999999999975 6999999999999
Q ss_pred eecCCC
Q psy2983 191 VTDRNE 196 (370)
Q Consensus 191 ~~~~~~ 196 (370)
+.++..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 877644
No 182
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.5e-16 Score=123.33 Aligned_cols=85 Identities=18% Similarity=0.281 Sum_probs=77.4
Q ss_pred CCCceEEEecCCCCCCHHHHH---hcccCCCceeeEEEeecCCCC---CcccEEEEEECCHHHHHHHHHHhCCceeCCee
Q psy2983 112 GGPMRLYIGSLHFNITEDMLR---GIFEPFGKIDNIQLMVDPDTG---RSKGYGFITFHSADDAKKAQEQLNGFELAGRP 185 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~---~~f~~~G~i~~v~~~~~~~~g---~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 185 (370)
...++|||+|||+.+++++|+ ++|++||.|..+.+..+..++ .++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345789999999999999999 999999999999999887644 56699999999999999999999999999999
Q ss_pred EEEEEeecCCC
Q psy2983 186 MKVGTVTDRNE 196 (370)
Q Consensus 186 l~V~~~~~~~~ 196 (370)
|+|.++.++..
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999887654
No 183
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=5.6e-17 Score=132.50 Aligned_cols=87 Identities=16% Similarity=0.381 Sum_probs=80.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHhcccCCCceee--EEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCc----eeCC
Q psy2983 110 GTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDN--IQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGF----ELAG 183 (370)
Q Consensus 110 ~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~--v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~----~i~g 183 (370)
.....++|||+|||+.+++++|+++|++||.|.. |+++.|+.+|.++|||||+|.+. +|.+|+..|||. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3455689999999999999999999999999977 99999998999999999999999 999999999999 9999
Q ss_pred eeEEEEEeecCCCC
Q psy2983 184 RPMKVGTVTDRNES 197 (370)
Q Consensus 184 ~~l~V~~~~~~~~~ 197 (370)
+.|+|.++.+....
T Consensus 98 r~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 98 KTINVEFAKGSKRD 111 (131)
T ss_dssp CCCCCEECCCSCCC
T ss_pred EEEEEEECCCCCCC
Confidence 99999998775443
No 184
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=121.85 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=76.7
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEec
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQP 91 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~ 91 (370)
.....++|||+|||.++++++|+++|+.| .|.++.++++ .+++++|||||+|.+.++|.+|++++|..+.|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEE
Confidence 34577999999999999999999999999 9999999999 789999999999999999999999999999999999998
Q ss_pred cccc
Q psy2983 92 TQAE 95 (370)
Q Consensus 92 ~~~~ 95 (370)
+...
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 7654
No 185
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=125.20 Aligned_cols=83 Identities=35% Similarity=0.686 Sum_probs=76.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q psy2983 110 GTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189 (370)
Q Consensus 110 ~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~ 189 (370)
.....++|||+|||..+++++|+++|++||.|..+++..+. +.++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999884 4589999999999999999999999999999999999
Q ss_pred EeecC
Q psy2983 190 TVTDR 194 (370)
Q Consensus 190 ~~~~~ 194 (370)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98765
No 186
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.5e-17 Score=126.43 Aligned_cols=83 Identities=30% Similarity=0.655 Sum_probs=78.2
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
.++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999766
Q ss_pred CCC
Q psy2983 194 RNE 196 (370)
Q Consensus 194 ~~~ 196 (370)
+..
T Consensus 88 ~~~ 90 (104)
T 1p1t_A 88 EKN 90 (104)
T ss_dssp TTH
T ss_pred ccc
Confidence 433
No 187
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.4e-17 Score=125.08 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=72.4
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhC--CceeCCeeEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLN--GFELAGRPMKVG 189 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~--g~~i~g~~l~V~ 189 (370)
.+..+|||+|||+++++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++.|+ +..+.|++|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34579999999999999999999999999999999865 7999999999999999999886 478999999999
Q ss_pred EeecCCCC
Q psy2983 190 TVTDRNES 197 (370)
Q Consensus 190 ~~~~~~~~ 197 (370)
++.++...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 98776554
No 188
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.7e-17 Score=119.97 Aligned_cols=75 Identities=21% Similarity=0.347 Sum_probs=71.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
++|||+|||.++++++|+++|++||+|.++.+++++.+++++|||||+|.+.++|.+|++ ++ ..+.|++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999999999999999999999999997 66 9999999999875
No 189
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=122.40 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=70.9
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCce--eCCeeEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE--LAGRPMKVG 189 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~--i~g~~l~V~ 189 (370)
.++++|||+|||+++++++|+++|++||.|.++.++++ +|+|||+|.+.++|.+|+..|++.. +.|++|+|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 45678999999999999999999999999999998743 7899999999999999999999875 789999999
Q ss_pred EeecCC
Q psy2983 190 TVTDRN 195 (370)
Q Consensus 190 ~~~~~~ 195 (370)
+++.+.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 987653
No 190
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1e-16 Score=119.50 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=68.3
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
+.-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 45799999999999999999999999999999864 5999999999999999999999999999999999886
No 191
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.8e-16 Score=122.74 Aligned_cols=83 Identities=24% Similarity=0.505 Sum_probs=77.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCcee--------C
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL--------A 182 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i--------~ 182 (370)
....++|||+|||+.+++++|+++|++||.|..++++.++ +|.++|||||+|.+.++|.+|+..|||..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456899999999999999999999999999999999997 999999999999999999999999999999 5
Q ss_pred CeeEEEEEeecC
Q psy2983 183 GRPMKVGTVTDR 194 (370)
Q Consensus 183 g~~l~V~~~~~~ 194 (370)
+++|.|.++.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998754
No 192
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=6.1e-17 Score=125.24 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=77.2
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh-hccCCccCCeeEEEe
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGIPIIVQ 90 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~i~g~~l~v~ 90 (370)
.....++|||+|||..+++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+ .++|..|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4456789999999999999999999999999999889999999999999999999999999999 599999999999999
Q ss_pred cccc
Q psy2983 91 PTQA 94 (370)
Q Consensus 91 ~~~~ 94 (370)
++..
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 8753
No 193
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.67 E-value=5.8e-17 Score=129.21 Aligned_cols=105 Identities=21% Similarity=0.338 Sum_probs=89.8
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
...++|||+|||..+++++|+++|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 34579999999999999999999999999999999855 556999999999999999999999999999999999998
Q ss_pred ecCCCCcCCCCCCCCHHHHHHhcccCCce
Q psy2983 192 TDRNESVGGGPSNLDTDEMERAGVDLGAT 220 (370)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 220 (370)
.++... ..++....++++++.+..+|..
T Consensus 83 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 83 NANRAF-QKMDTKKKEEQLKLLKEKYGIN 110 (115)
T ss_dssp CHHHHT-TTSCHHHHHHHHHHHHHHHCCC
T ss_pred cCChhh-hhhhHhHhHHHHHHHHHHhCCC
Confidence 765543 3344556677888888877754
No 194
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=1.1e-16 Score=122.13 Aligned_cols=83 Identities=25% Similarity=0.309 Sum_probs=76.1
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEe
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQ 90 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~ 90 (370)
...+.++|||+|||..+++++|+++|++||.|..+.+.++ +++++|||||+|.+.++|.+|++ ++|..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999999884 68899999999999999999996 99999999999999
Q ss_pred cccccc
Q psy2983 91 PTQAEK 96 (370)
Q Consensus 91 ~~~~~~ 96 (370)
++....
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 887543
No 195
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.8e-17 Score=125.03 Aligned_cols=82 Identities=26% Similarity=0.619 Sum_probs=74.0
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecC
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~ 194 (370)
++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.+ |.+|+..|||..+.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999889999999999999999 99999999999999999999998775
Q ss_pred CCC
Q psy2983 195 NES 197 (370)
Q Consensus 195 ~~~ 197 (370)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 196
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.7e-17 Score=126.33 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=71.1
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-cc--CCccCCeeEE
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LN--GQKLLGIPII 88 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~--g~~i~g~~l~ 88 (370)
...+.++|||+|||.++|+++|+++|++||.|.+|+++++ ||||||+|.+.++|..|++ ++ +..+.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3467899999999999999999999999999999999874 6999999999999999996 65 5789999999
Q ss_pred Eecccccc
Q psy2983 89 VQPTQAEK 96 (370)
Q Consensus 89 v~~~~~~~ 96 (370)
|.++....
T Consensus 86 V~~A~~~~ 93 (105)
T 1sjq_A 86 IQFSNHKE 93 (105)
T ss_dssp BCCCSSSS
T ss_pred EEEcCCCC
Confidence 99987543
No 197
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.3e-16 Score=121.79 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=71.3
Q ss_pred CCCceEEEecCCC-CCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCC--ceeCCeeEEE
Q psy2983 112 GGPMRLYIGSLHF-NITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNG--FELAGRPMKV 188 (370)
Q Consensus 112 ~~~~~l~V~nlp~-~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~i~g~~l~V 188 (370)
.+.++|||+|||+ .+++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++.|++ ..+.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3567999999999 9999999999999999999999865 58999999999999999999986 4599999999
Q ss_pred EEeecCCC
Q psy2983 189 GTVTDRNE 196 (370)
Q Consensus 189 ~~~~~~~~ 196 (370)
.++.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99986544
No 198
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=7.6e-17 Score=124.38 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=70.1
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCc--cCCeeEE
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQK--LLGIPII 88 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~--i~g~~l~ 88 (370)
...++++|||+|||.++|+++|+++|++||.|.++.+++ +||||||+|.+.++|.+|++ +++.. +.|++|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 345789999999999999999999999999999999875 37899999999999999996 88775 7899999
Q ss_pred Eeccccc
Q psy2983 89 VQPTQAE 95 (370)
Q Consensus 89 v~~~~~~ 95 (370)
|++++.+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9998754
No 199
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=126.71 Aligned_cols=84 Identities=35% Similarity=0.629 Sum_probs=78.9
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
..++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+.. ++..+.|+.|+|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 347899999999999999999999999999999999988999999999999999999999997 9999999999999988
Q ss_pred cCCCC
Q psy2983 193 DRNES 197 (370)
Q Consensus 193 ~~~~~ 197 (370)
++...
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 76554
No 200
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-15 Score=118.59 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=72.4
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHh--CCceeCCeeEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL--NGFELAGRPMKVG 189 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~i~g~~l~V~ 189 (370)
.+.++|||+|||+.+++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|+..| ++..+.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 34579999999999999999999999999999988754 899999999999999999977 4688999999999
Q ss_pred EeecCCCCc
Q psy2983 190 TVTDRNESV 198 (370)
Q Consensus 190 ~~~~~~~~~ 198 (370)
++..+....
T Consensus 87 ~a~~~~~~~ 95 (101)
T 2cq1_A 87 YSNHKELKT 95 (101)
T ss_dssp ECSCSSCCC
T ss_pred EcCcccCcC
Confidence 998765543
No 201
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=1e-16 Score=129.47 Aligned_cols=82 Identities=28% Similarity=0.455 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEeccc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~~ 93 (370)
.+.++|||+|||.++|+++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++++|..|.|+.|.|.++.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cc
Q psy2983 94 AE 95 (370)
Q Consensus 94 ~~ 95 (370)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 202
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=4e-16 Score=131.26 Aligned_cols=86 Identities=27% Similarity=0.414 Sum_probs=80.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred eecCCC
Q psy2983 191 VTDRNE 196 (370)
Q Consensus 191 ~~~~~~ 196 (370)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 977554
No 203
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.67 E-value=3.7e-17 Score=125.63 Aligned_cols=81 Identities=12% Similarity=0.171 Sum_probs=74.8
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
....++|||+|||..+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+|++ ++|..+.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3456899999999999999999999999999999999999999999999999999999999996 999999999999988
Q ss_pred cc
Q psy2983 92 TQ 93 (370)
Q Consensus 92 ~~ 93 (370)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 204
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=5.6e-17 Score=133.05 Aligned_cols=85 Identities=19% Similarity=0.242 Sum_probs=78.6
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCee
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGK---VRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIP 86 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~---v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~ 86 (370)
.+...+.++|||+|||.++|+++|+++|++||. |.+|.+++|+. ++++|||||+|.+.++|.+|+++++..+.|+.
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~ 116 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRY 116 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEE
Confidence 345567899999999999999999999999999 89999999987 99999999999999999999999999999999
Q ss_pred EEEeccccc
Q psy2983 87 IIVQPTQAE 95 (370)
Q Consensus 87 l~v~~~~~~ 95 (370)
|.|.++...
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999887643
No 205
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.7e-17 Score=127.88 Aligned_cols=84 Identities=19% Similarity=0.277 Sum_probs=76.4
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIV 89 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v 89 (370)
.+...+.++|||+|||.++|+++|+++|+.| .|.+|.|++|+. |+++|||||+|.+.++|.+|+++++..+.|+.|.|
T Consensus 10 ~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 87 (109)
T 2dnn_A 10 LPINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 87 (109)
T ss_dssp CCCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 3445566899999999999999999999999 899999999876 89999999999999999999999999999999999
Q ss_pred eccccc
Q psy2983 90 QPTQAE 95 (370)
Q Consensus 90 ~~~~~~ 95 (370)
..+...
T Consensus 88 ~~a~~~ 93 (109)
T 2dnn_A 88 SPATER 93 (109)
T ss_dssp EECCHH
T ss_pred EECCcc
Confidence 877643
No 206
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=126.32 Aligned_cols=85 Identities=25% Similarity=0.425 Sum_probs=76.9
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeE
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPI 87 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l 87 (370)
........++|||+|||.++++++|+++|++||.|.++.++++. +.++|||||+|.+.++|.+|++ ++|..+.|+.|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456688999999999999999999999999999999999885 3489999999999999999996 99999999999
Q ss_pred EEeccccc
Q psy2983 88 IVQPTQAE 95 (370)
Q Consensus 88 ~v~~~~~~ 95 (370)
.|.++...
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99987643
No 207
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.2e-17 Score=130.53 Aligned_cols=83 Identities=17% Similarity=0.266 Sum_probs=76.7
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEecc
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~ 92 (370)
..+.++|||+|||.++|+++|+++|+.||.|.++.++.+..+++++|||||+|.+.++|.+|++++|..|.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 45668999999999999999999999999999877777888999999999999999999999999999999999999987
Q ss_pred ccc
Q psy2983 93 QAE 95 (370)
Q Consensus 93 ~~~ 95 (370)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 653
No 208
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-17 Score=129.70 Aligned_cols=86 Identities=19% Similarity=0.284 Sum_probs=77.9
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIV 89 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v 89 (370)
.......++|||+|||.++|+++|+++|+.||.|.. .++.+..+++++|||||+|.+.++|.+|++++|..+.|+.|.|
T Consensus 11 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 89 (101)
T 1fj7_A 11 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 89 (101)
T ss_dssp STTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEE
Confidence 344567899999999999999999999999999988 6777777889999999999999999999999999999999999
Q ss_pred ecccccc
Q psy2983 90 QPTQAEK 96 (370)
Q Consensus 90 ~~~~~~~ 96 (370)
.++....
T Consensus 90 ~~a~~~~ 96 (101)
T 1fj7_A 90 EKPKGRD 96 (101)
T ss_dssp ECCSCCC
T ss_pred EEcCCCC
Confidence 9987543
No 209
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.66 E-value=5.9e-17 Score=133.07 Aligned_cols=88 Identities=24% Similarity=0.360 Sum_probs=81.5
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeE
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPI 87 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l 87 (370)
.++...+.++|||+|||..+|+++|+++|+.||.|..|.+++++.+++++|||||+|.+.++|.+|++ ++|..+.|++|
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556778999999999999999999999999999999999999899999999999999999999996 99999999999
Q ss_pred EEecccccc
Q psy2983 88 IVQPTQAEK 96 (370)
Q Consensus 88 ~v~~~~~~~ 96 (370)
.|.++....
T Consensus 120 ~V~~a~~~~ 128 (135)
T 2lea_A 120 RVQMARYGR 128 (135)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999987543
No 210
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=7e-17 Score=119.01 Aligned_cols=76 Identities=32% Similarity=0.594 Sum_probs=72.7
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
++|||+|||+.+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+..++ ..+.|+.|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 369999999999999999999999999999999998899999999999999999999999988 9999999999875
No 211
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1e-15 Score=120.73 Aligned_cols=84 Identities=21% Similarity=0.426 Sum_probs=76.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||..+++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999864 456899999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2983 191 VTDRNES 197 (370)
Q Consensus 191 ~~~~~~~ 197 (370)
+.++...
T Consensus 96 a~~~~~~ 102 (109)
T 1x4a_A 96 PRSGRGT 102 (109)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 8876554
No 212
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=9.5e-16 Score=119.17 Aligned_cols=84 Identities=32% Similarity=0.525 Sum_probs=75.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||+.+++++|+++|++||.| +++.+ .+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3456899999999999999999999999987 56666 5899999999999999999999999999999999999999
Q ss_pred eecCCCCc
Q psy2983 191 VTDRNESV 198 (370)
Q Consensus 191 ~~~~~~~~ 198 (370)
+.++....
T Consensus 88 a~~~~~~~ 95 (101)
T 2fc9_A 88 QGPRGSPN 95 (101)
T ss_dssp CSSCCCCC
T ss_pred cCCCCCCC
Confidence 98775543
No 213
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=4.2e-16 Score=128.42 Aligned_cols=81 Identities=33% Similarity=0.622 Sum_probs=76.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||..+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred e
Q psy2983 191 V 191 (370)
Q Consensus 191 ~ 191 (370)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 214
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=3.9e-16 Score=139.78 Aligned_cols=129 Identities=18% Similarity=0.339 Sum_probs=111.1
Q ss_pred CCCceEEEecCCC-CCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 112 GGPMRLYIGSLHF-NITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 112 ~~~~~l~V~nlp~-~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
.+.++|||+|||+ .+++++|+++|++||.|..++++.++ +|||||+|.+.++|.+|++.|+|..+.|+.|+|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3457999999999 99999999999999999999998774 78999999999999999999999999999999998
Q ss_pred eecCC------------------------------------------CCcCCCCCCCCHHHHHHhcccCC-ceeeeeeee
Q psy2983 191 VTDRN------------------------------------------ESVGGGPSNLDTDEMERAGVDLG-ATGRLQLMF 227 (370)
Q Consensus 191 ~~~~~------------------------------------------~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~l~~ 227 (370)
+.... ..+.+++..+++++++..|..+| .+..+.++.
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 86431 11557888999999999999999 898888865
Q ss_pred ccccCCC---CCChHHHHHHHh
Q psy2983 228 KLAEGTG---LELPPAAASALN 246 (370)
Q Consensus 228 ~~~~~~~---~~~~~~a~~a~~ 246 (370)
+ .++++ |..+..|..|+.
T Consensus 187 ~-~~g~afV~f~~~~~A~~Ai~ 207 (229)
T 2adc_A 187 K-DRKMALIQMGSVEEAVQALI 207 (229)
T ss_dssp S-STTCEEEEESSHHHHHHHHH
T ss_pred C-CCcEEEEEECCHHHHHHHHH
Confidence 3 35555 667888877776
No 215
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=3.4e-17 Score=124.59 Aligned_cols=79 Identities=29% Similarity=0.511 Sum_probs=72.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEeccccc
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAE 95 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~~~~ 95 (370)
++|||+|||.++++++|+++|++||+|.++.+++++.+++++|||||+|.+.+ |.+|++ ++|..+.|++|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 999996 9999999999999998754
Q ss_pred c
Q psy2983 96 K 96 (370)
Q Consensus 96 ~ 96 (370)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 216
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.2e-16 Score=123.59 Aligned_cols=86 Identities=17% Similarity=0.312 Sum_probs=78.9
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCc-eeeEEEe-ecCCCCCcccEEEEEECCHHHHHHHHHHhC--CceeCCeeEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGK-IDNIQLM-VDPDTGRSKGYGFITFHSADDAKKAQEQLN--GFELAGRPMK 187 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~-i~~v~~~-~~~~~g~~~g~afV~f~~~~~a~~A~~~l~--g~~i~g~~l~ 187 (370)
...++|||+|||+.+++++|+++|++||. |..+.++ .+..+|.++|||||+|.+.++|.+|+..|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34589999999999999999999999998 9999998 788889999999999999999999999996 5999999999
Q ss_pred EEEeecCCCC
Q psy2983 188 VGTVTDRNES 197 (370)
Q Consensus 188 V~~~~~~~~~ 197 (370)
|.++.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999876553
No 217
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.66 E-value=2.5e-16 Score=132.49 Aligned_cols=86 Identities=19% Similarity=0.226 Sum_probs=80.0
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEE
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV 89 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v 89 (370)
....+.++|||+|||..+|+++|+++|+.||+|..|.+++++.++.++|||||+|.+.++|.+|++ |++..|.|+.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 334578999999999999999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred ecccccc
Q psy2983 90 QPTQAEK 96 (370)
Q Consensus 90 ~~~~~~~ 96 (370)
.++....
T Consensus 114 ~~a~~~~ 120 (156)
T 1h2v_Z 114 DWDAGFK 120 (156)
T ss_dssp EEESCCC
T ss_pred EECCCCC
Confidence 9987543
No 218
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=130.56 Aligned_cols=82 Identities=22% Similarity=0.419 Sum_probs=76.7
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEE
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV 89 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v 89 (370)
....+.++|||+|||..+++++|+++|++||+|.++.+++++.+++++|||||+|.+.++|.+|++ ++|..+.|++|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 445678999999999999999999999999999999999999999999999999999999999995 9999999999999
Q ss_pred ecc
Q psy2983 90 QPT 92 (370)
Q Consensus 90 ~~~ 92 (370)
.++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 864
No 219
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-16 Score=124.66 Aligned_cols=85 Identities=19% Similarity=0.288 Sum_probs=77.3
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEe-eeCCCCCeecEEEEEecCCCChHHHhh-cc--CCccCCeeE
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGK-VRDVRLI-TCNKTRRFKGIAYIEFKDPESVPLAMG-LN--GQKLLGIPI 87 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~-v~~v~i~-~d~~~~~~kg~afVeF~~~e~A~~Al~-l~--g~~i~g~~l 87 (370)
..+.++|||+|||..+++++|+++|+.||. |.++.++ .+..+++++|||||+|.+.++|..|++ ++ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346799999999999999999999999998 9999998 788888999999999999999999996 85 589999999
Q ss_pred EEeccccccc
Q psy2983 88 IVQPTQAEKN 97 (370)
Q Consensus 88 ~v~~~~~~~~ 97 (370)
.|.++.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999876543
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.65 E-value=2e-16 Score=133.32 Aligned_cols=86 Identities=23% Similarity=0.337 Sum_probs=79.7
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEE
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV 89 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v 89 (370)
......++|||+|||..+++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++ |+|..+.|++|.|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567999999999999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred ecccccc
Q psy2983 90 QPTQAEK 96 (370)
Q Consensus 90 ~~~~~~~ 96 (370)
.++....
T Consensus 145 ~~a~~~~ 151 (158)
T 2kn4_A 145 QMARYGR 151 (158)
T ss_dssp EEECCSS
T ss_pred EECCCCC
Confidence 9987543
No 221
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=129.32 Aligned_cols=85 Identities=19% Similarity=0.371 Sum_probs=74.5
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCC
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLE----EFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLG 84 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~----~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g 84 (370)
++...+.++|||+|||..+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|..|++ ++|..+.|
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 3445678999999999999999876 6999999999987754 57889999999999999999995 99999999
Q ss_pred eeEEEeccccccc
Q psy2983 85 IPIIVQPTQAEKN 97 (370)
Q Consensus 85 ~~l~v~~~~~~~~ 97 (370)
++|.|.++.....
T Consensus 100 r~l~V~~a~~~~~ 112 (127)
T 2a3j_A 100 NPLVITFSETPQS 112 (127)
T ss_dssp SCCEEEECCCCCH
T ss_pred CEEEEEEccCcch
Confidence 9999999876543
No 222
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=3.9e-16 Score=126.06 Aligned_cols=82 Identities=24% Similarity=0.468 Sum_probs=77.3
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
.++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 478999999999999999999999999999999999889999999999999999999999 7999999999999999876
Q ss_pred CCC
Q psy2983 194 RNE 196 (370)
Q Consensus 194 ~~~ 196 (370)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 544
No 223
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=2.6e-16 Score=123.42 Aligned_cols=82 Identities=24% Similarity=0.408 Sum_probs=75.0
Q ss_pred CCceEEEecCCCCC------CHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCe-e
Q psy2983 113 GPMRLYIGSLHFNI------TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGR-P 185 (370)
Q Consensus 113 ~~~~l~V~nlp~~~------t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~-~ 185 (370)
..++|||+|||+.+ ++++|+++|++||.|..+.+. ..+|.++|||||+|.+.++|.+|+..|||..+.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 45799999999999 789999999999999999988 35899999999999999999999999999999998 9
Q ss_pred EEEEEeecCCC
Q psy2983 186 MKVGTVTDRNE 196 (370)
Q Consensus 186 l~V~~~~~~~~ 196 (370)
|+|.++.+...
T Consensus 92 l~V~~a~~~~k 102 (105)
T 2nlw_A 92 FRVNLFTDFDK 102 (105)
T ss_dssp EEEECSCCCCC
T ss_pred EEEEEcchHhh
Confidence 99999876543
No 224
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-16 Score=124.28 Aligned_cols=82 Identities=24% Similarity=0.349 Sum_probs=76.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCce-eeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKI-DNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i-~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~ 189 (370)
....++|||+|||+.+++++|+++|++||.| ..++++.++ +|.++|||||+|.+.++|.+|+.. |+..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3456899999999999999999999999999 899999998 999999999999999999999996 9999999999999
Q ss_pred EeecC
Q psy2983 190 TVTDR 194 (370)
Q Consensus 190 ~~~~~ 194 (370)
++.++
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 225
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.1e-16 Score=121.92 Aligned_cols=85 Identities=16% Similarity=0.242 Sum_probs=74.0
Q ss_pred CCCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-c--cCCcc
Q psy2983 6 SDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L--NGQKL 82 (370)
Q Consensus 6 ~~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l--~g~~i 82 (370)
++.......++++|||+|||.++++++|+++|++||.|.++.++++ +|||||+|.+.++|..|++ + ++..+
T Consensus 5 s~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 78 (101)
T 2cq1_A 5 SSGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL 78 (101)
T ss_dssp CCCCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3444455678899999999999999999999999999999988764 7999999999999999996 4 57889
Q ss_pred CCeeEEEecccccc
Q psy2983 83 LGIPIIVQPTQAEK 96 (370)
Q Consensus 83 ~g~~l~v~~~~~~~ 96 (370)
.|++|+|.++....
T Consensus 79 ~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 79 RNQPIYIQYSNHKE 92 (101)
T ss_dssp TTEECEEEECSCSS
T ss_pred CCcEEEEEEcCccc
Confidence 99999999987543
No 226
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.1e-16 Score=122.62 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=72.3
Q ss_pred CCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccC--CccCC
Q psy2983 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNG--QKLLG 84 (370)
Q Consensus 8 ~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g--~~i~g 84 (370)
..+....++++|||+|||.++++++|+++|++||.|.+|.++++ ||||||+|.+.++|.+|++ +++ ..+.|
T Consensus 7 ~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 7 GSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 33445678899999999999999999999999999999998763 7999999999999999996 654 46999
Q ss_pred eeEEEecccccc
Q psy2983 85 IPIIVQPTQAEK 96 (370)
Q Consensus 85 ~~l~v~~~~~~~ 96 (370)
++|+|.++....
T Consensus 81 r~l~V~~a~~~~ 92 (104)
T 1wex_A 81 QQAFFNYSTSKR 92 (104)
T ss_dssp SBCEEEECSSSS
T ss_pred EEEEEEEccCcc
Confidence 999999987654
No 227
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.65 E-value=4.3e-16 Score=125.91 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=77.9
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEe
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQ 90 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~ 90 (370)
.....++|||+|||..+++++|+++|+.||.|.++.+.+++ +++++|||||+|.+.++|.+|++ ++|..+.|++|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45677899999999999999999999999999999999998 89999999999999999999997 99999999999999
Q ss_pred ccccc
Q psy2983 91 PTQAE 95 (370)
Q Consensus 91 ~~~~~ 95 (370)
++...
T Consensus 110 ~a~~~ 114 (124)
T 2kt5_A 110 LVASQ 114 (124)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 98654
No 228
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-16 Score=123.14 Aligned_cols=85 Identities=28% Similarity=0.473 Sum_probs=75.8
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh-hccCCccCCeeE
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGIPI 87 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~i~g~~l 87 (370)
......+.++|||+|||..+++++|+++|++||.|..+.+..+ +.++|||||+|.+.++|.+|+ .|++..+.|+.|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 15 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3445667899999999999999999999999999999998654 457899999999999999999 599999999999
Q ss_pred EEecccccc
Q psy2983 88 IVQPTQAEK 96 (370)
Q Consensus 88 ~v~~~~~~~ 96 (370)
.|.++....
T Consensus 92 ~V~~a~~~~ 100 (109)
T 1x4a_A 92 RVEFPRSGR 100 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEEcccCC
Confidence 999987643
No 229
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.9e-16 Score=122.15 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=73.8
Q ss_pred cCCCCeEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeE
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLE----EFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPI 87 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~----~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l 87 (370)
..+.++|||+|||..+++++|+ ++|++||.|.++.+++++.+ +|||||+|.+.++|.+|++ ++|..+.|++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3466899999999999999999 99999999999999988765 7899999999999999996 99999999999
Q ss_pred EEeccccc
Q psy2983 88 IVQPTQAE 95 (370)
Q Consensus 88 ~v~~~~~~ 95 (370)
+|.++...
T Consensus 83 ~V~~a~~~ 90 (96)
T 2dgx_A 83 LVSLATGA 90 (96)
T ss_dssp EEEECCCS
T ss_pred EEEEcCCC
Confidence 99998654
No 230
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=3.9e-16 Score=136.27 Aligned_cols=127 Identities=17% Similarity=0.326 Sum_probs=110.3
Q ss_pred CceEEEecCCC-CCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 114 PMRLYIGSLHF-NITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 114 ~~~l~V~nlp~-~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
+++|||+|||+ .+++++|+++|++||.|..++++.++ +|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 46899999999 99999999999999999999998764 7899999999999999999999999999999999886
Q ss_pred cCC------------------------------------------CCcCCCCCCCCHHHHHHhcccCC-ceeeeeeeecc
Q psy2983 193 DRN------------------------------------------ESVGGGPSNLDTDEMERAGVDLG-ATGRLQLMFKL 229 (370)
Q Consensus 193 ~~~------------------------------------------~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~l~~~~ 229 (370)
... ..+++++..+++++++..|..+| .+..+.++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 431 11567888999999999999999 8988888654
Q ss_pred ccCCC---CCChHHHHHHHh
Q psy2983 230 AEGTG---LELPPAAASALN 246 (370)
Q Consensus 230 ~~~~~---~~~~~~a~~a~~ 246 (370)
.++++ |..+..|..|+.
T Consensus 157 ~~g~afV~f~~~~~A~~A~~ 176 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALI 176 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHH
T ss_pred CCcEEEEEeCCHHHHHHHHH
Confidence 35555 678888888776
No 231
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.65 E-value=2.5e-16 Score=133.87 Aligned_cols=88 Identities=19% Similarity=0.321 Sum_probs=80.1
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeE
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPI 87 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l 87 (370)
.+....+.++|||+|||..+++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|..|++ |+|..|.|++|
T Consensus 65 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 65 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp -CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34456677899999999999999999999999999999999999999999999999999999999996 99999999999
Q ss_pred EEecccccc
Q psy2983 88 IVQPTQAEK 96 (370)
Q Consensus 88 ~v~~~~~~~ 96 (370)
.|.++....
T Consensus 145 ~V~~a~~~~ 153 (165)
T 1rk8_A 145 QVDWCFVKG 153 (165)
T ss_dssp EEEESEECC
T ss_pred EEEEecCCC
Confidence 999987654
No 232
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.6e-16 Score=120.43 Aligned_cols=83 Identities=17% Similarity=0.295 Sum_probs=75.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
.....+|||+|||+++++++|+++|++||.+ .++++.++ +|+++|||||+|.+.++|.+|++ +|+..+.|+.|+|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3455799999999999999999999999955 99999997 89999999999999999999996 799999999999998
Q ss_pred eecCCC
Q psy2983 191 VTDRNE 196 (370)
Q Consensus 191 ~~~~~~ 196 (370)
+.....
T Consensus 89 ~~~~~~ 94 (102)
T 1wez_A 89 NSTAGT 94 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 876544
No 233
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-15 Score=119.38 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=75.5
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceee-EEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDN-IQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~-v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....+|||+|||+.+++++|+++|++||.|.. +.++.+ .+|+++|||||+|.+.++|.+|+.. ++..+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 44579999999999999999999999999987 888888 6999999999999999999999996 99999999999998
Q ss_pred eecCC
Q psy2983 191 VTDRN 195 (370)
Q Consensus 191 ~~~~~ 195 (370)
+..+.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 76543
No 234
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=5.7e-16 Score=124.15 Aligned_cols=80 Identities=16% Similarity=0.277 Sum_probs=74.9
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCc---eeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGK---IDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~---i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V 188 (370)
...++|||+|||+++++++|+++|+.||. |..++++.++. |+++|||||+|.+.++|.+|+. +|+..+.|+.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 34578999999999999999999999999 89999999975 9999999999999999999999 9999999999999
Q ss_pred EEeec
Q psy2983 189 GTVTD 193 (370)
Q Consensus 189 ~~~~~ 193 (370)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98754
No 235
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=119.70 Aligned_cols=80 Identities=20% Similarity=0.206 Sum_probs=71.4
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCc--eeCCeeEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGF--ELAGRPMKVG 189 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~i~g~~l~V~ 189 (370)
.+.++|||+|||+.+++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|+..|++. .+.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34579999999999999999999999999999998753 799999999999999999988764 5899999999
Q ss_pred EeecCCCC
Q psy2983 190 TVTDRNES 197 (370)
Q Consensus 190 ~~~~~~~~ 197 (370)
++..+...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99876554
No 236
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.64 E-value=1.9e-16 Score=127.96 Aligned_cols=83 Identities=17% Similarity=0.249 Sum_probs=75.1
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCee--EEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEE
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVR--DVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPII 88 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~--~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~ 88 (370)
+.....++|||+|||+++|+++|+++|++| .|. +|.|++|+. |+++|||||+|.+.++|.+|+++++..|.|+.|.
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE
Confidence 445678999999999999999999999999 566 899999987 9999999999999999999999889999999999
Q ss_pred Eeccccc
Q psy2983 89 VQPTQAE 95 (370)
Q Consensus 89 v~~~~~~ 95 (370)
|.++...
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9877543
No 237
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.3e-15 Score=117.19 Aligned_cols=84 Identities=29% Similarity=0.507 Sum_probs=76.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||..+++++|+++|+.|+ .+.++.+..++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34568999999999999999999999874 677888888999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2983 191 VTDRNES 197 (370)
Q Consensus 191 ~~~~~~~ 197 (370)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9887654
No 238
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=5.3e-17 Score=127.82 Aligned_cols=85 Identities=19% Similarity=0.159 Sum_probs=78.2
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCee
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGK---VRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIP 86 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~---v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~ 86 (370)
.......++|||+|||.++|+++|+++|+.||. |.+|.+++++. |+++|||||+|.+.++|.+|+++++..+.|+.
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 344567899999999999999999999999998 89999999987 99999999999999999999999999999999
Q ss_pred EEEeccccc
Q psy2983 87 IIVQPTQAE 95 (370)
Q Consensus 87 l~v~~~~~~ 95 (370)
|.|.++...
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999887653
No 239
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=118.02 Aligned_cols=81 Identities=30% Similarity=0.534 Sum_probs=74.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
..+.++|||+|||+.+++++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|+..|||..+.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345689999999999999999999999999999998754 78999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2983 191 VTDRNES 197 (370)
Q Consensus 191 ~~~~~~~ 197 (370)
+.++...
T Consensus 86 a~~~~~~ 92 (99)
T 2cpj_A 86 ACHSASL 92 (99)
T ss_dssp SSCCSCC
T ss_pred cCCCCCC
Confidence 8876553
No 240
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.5e-16 Score=123.64 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=70.2
Q ss_pred ccCCCCeEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccC--CccCCeeE
Q psy2983 12 EERDARTIFCMQLSQ-RIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNG--QKLLGIPI 87 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~-~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g--~~i~g~~l 87 (370)
...++++|||+|||. ++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|..|++ +++ ..+.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 345789999999999 9999999999999999999999864 5899999999999999996 765 45999999
Q ss_pred EEecccccc
Q psy2983 88 IVQPTQAEK 96 (370)
Q Consensus 88 ~v~~~~~~~ 96 (370)
+|.+++...
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999987543
No 241
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=119.10 Aligned_cols=72 Identities=21% Similarity=0.258 Sum_probs=66.6
Q ss_pred CCeEEEcCCCCCC------cHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCe-eE
Q psy2983 16 ARTIFCMQLSQRI------RTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGI-PI 87 (370)
Q Consensus 16 ~r~v~V~nLp~~~------te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~-~l 87 (370)
+++|||+|||..+ ++++|+++|++||+|.++.+. +.+++++|||||+|.+.++|.+|++ ++|..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999987 4578999999999999999999996 999999999 88
Q ss_pred EE
Q psy2983 88 IV 89 (370)
Q Consensus 88 ~v 89 (370)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 66
No 242
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.64 E-value=1.3e-15 Score=129.64 Aligned_cols=126 Identities=25% Similarity=0.469 Sum_probs=106.5
Q ss_pred CceEEEecCCCCCCHHHHHhcccCC----C-------ceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeC
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPF----G-------KIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA 182 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~----G-------~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~ 182 (370)
.++|||+|||+++++++|+++|++| | .|..+.+. .++|||||+|.+.++|.+|+ .|||..+.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 4789999999999999999999999 6 66666554 44899999999999999999 79999999
Q ss_pred CeeEEEEEeecCCC-------CcCCCCCCCCHHHHHHhcccCCceeeeeeeeccc----cCCC---CCChHHHHHHHh
Q psy2983 183 GRPMKVGTVTDRNE-------SVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLA----EGTG---LELPPAAASALN 246 (370)
Q Consensus 183 g~~l~V~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~----~~~~---~~~~~~a~~a~~ 246 (370)
|+.|+|.++.+... .+++++..+++++++..|..+|.+..+.++.+.. +|++ |..+.+|..|+.
T Consensus 77 g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 154 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 154 (172)
T ss_dssp TEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHH
T ss_pred CceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 99999999865432 3678999999999999999999999999887632 3444 567777777766
No 243
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4e-16 Score=124.49 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=72.0
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-cc--CCccCCeeE
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LN--GQKLLGIPI 87 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~--g~~i~g~~l 87 (370)
....++++|||+|||.++|+++|+++|++||.|.+|.++++ ||||||+|.+.++|.+|++ ++ +..+.|++|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34567899999999999999999999999999999999875 7999999999999999996 65 578999999
Q ss_pred EEeccccccc
Q psy2983 88 IVQPTQAEKN 97 (370)
Q Consensus 88 ~v~~~~~~~~ 97 (370)
+|.++.....
T Consensus 100 ~V~~a~~k~~ 109 (119)
T 2ad9_A 100 YIQFSNHKEL 109 (119)
T ss_dssp EEEECSSSSC
T ss_pred EEEEccCCCC
Confidence 9999875543
No 244
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.6e-16 Score=122.58 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=72.9
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCC--ceeCCeeEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNG--FELAGRPMKVG 189 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~i~g~~l~V~ 189 (370)
.+.++|||+|||+++++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++.|++ ..+.|++|+|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 34578999999999999999999999999999999865 79999999999999999998874 68999999999
Q ss_pred EeecCCCCc
Q psy2983 190 TVTDRNESV 198 (370)
Q Consensus 190 ~~~~~~~~~ 198 (370)
++.++....
T Consensus 103 ~a~~k~~~~ 111 (119)
T 2ad9_A 103 FSNHKELKT 111 (119)
T ss_dssp ECSSSSCCC
T ss_pred EccCCCCCc
Confidence 997765543
No 245
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-15 Score=114.81 Aligned_cols=80 Identities=28% Similarity=0.464 Sum_probs=72.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|||..+++++|+++|++||.|..+.+. ++||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 3456899999999999999999999999999999987 44999999999999999999999999999999999
Q ss_pred eecCCCCc
Q psy2983 191 VTDRNESV 198 (370)
Q Consensus 191 ~~~~~~~~ 198 (370)
+.++....
T Consensus 79 a~~~~~~~ 86 (92)
T 2dgt_A 79 STSRLRTA 86 (92)
T ss_dssp SSCCCSCC
T ss_pred ccCCCCCC
Confidence 98765543
No 246
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.5e-16 Score=122.88 Aligned_cols=82 Identities=17% Similarity=0.430 Sum_probs=74.7
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCcc-------
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKL------- 82 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i------- 82 (370)
+...+.++|||+|||..+++++|+++|+.||.|.++.+++++ ++.++|||||+|.+.++|.+|++ |+|..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 345677999999999999999999999999999999999998 89999999999999999999996 999999
Q ss_pred -CCeeEEEeccc
Q psy2983 83 -LGIPIIVQPTQ 93 (370)
Q Consensus 83 -~g~~l~v~~~~ 93 (370)
.+++|.|.++.
T Consensus 99 ~~~~~l~v~~a~ 110 (114)
T 1x5o_A 99 APTEPLLCKFSG 110 (114)
T ss_dssp CCSSCBEEEECC
T ss_pred CCCCceeEEccC
Confidence 56778887765
No 247
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.5e-16 Score=124.83 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=77.7
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHH---HHhhcCCCeeEEEEeeeCCCC---CeecEEEEEecCCCChHHHhh-ccCCcc
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLE---EFFSSVGKVRDVRLITCNKTR---RFKGIAYIEFKDPESVPLAMG-LNGQKL 82 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~---~~f~~~G~v~~v~i~~d~~~~---~~kg~afVeF~~~e~A~~Al~-l~g~~i 82 (370)
.......++|||+|||..+++++|+ ++|++||+|.++.++++..++ +++|||||+|.+.++|.+|++ |+|..+
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 3445667899999999999999999 999999999999999887654 456999999999999999996 899999
Q ss_pred CCeeEEEecccccc
Q psy2983 83 LGIPIIVQPTQAEK 96 (370)
Q Consensus 83 ~g~~l~v~~~~~~~ 96 (370)
.|++|.|.++....
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 99999999987654
No 248
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.6e-16 Score=126.41 Aligned_cols=81 Identities=19% Similarity=0.336 Sum_probs=74.6
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
....+|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+. |||..+.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 455899999999999999999999999999986666666799999999999999999999999 9999999999999997
Q ss_pred ec
Q psy2983 192 TD 193 (370)
Q Consensus 192 ~~ 193 (370)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 65
No 249
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=4e-16 Score=127.94 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=74.9
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCc---eeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGK---IDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~---i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V 188 (370)
....+|||+|||+++|+++|+++|++||. |..|+++.++. |+++|||||+|.+.++|.+|++ ||+..+.|+.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 44579999999999999999999999999 89999999985 9999999999999999999999 9999999999999
Q ss_pred EEeec
Q psy2983 189 GTVTD 193 (370)
Q Consensus 189 ~~~~~ 193 (370)
.++.+
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 88643
No 250
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=115.05 Aligned_cols=78 Identities=28% Similarity=0.602 Sum_probs=72.5
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
.+.++|||+|||..+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 456899999999999999999999999999999987 679999999999999999999999999999999998
Q ss_pred ecCCCC
Q psy2983 192 TDRNES 197 (370)
Q Consensus 192 ~~~~~~ 197 (370)
.++...
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 776554
No 251
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.2e-16 Score=120.03 Aligned_cols=90 Identities=19% Similarity=0.303 Sum_probs=79.6
Q ss_pred CCCCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccC
Q psy2983 5 YSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLL 83 (370)
Q Consensus 5 ~~~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~ 83 (370)
.+........+.++|||+|||..+++++|+++|+.|+ .+.++.++.+++++|||||+|.+.++|.+|++ |+|..|.
T Consensus 4 ~s~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 4 GSSGPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp CCCTTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 3445556677889999999999999999999999873 67888898899999999999999999999996 9999999
Q ss_pred CeeEEEeccccccc
Q psy2983 84 GIPIIVQPTQAEKN 97 (370)
Q Consensus 84 g~~l~v~~~~~~~~ 97 (370)
|+.|.|.++.....
T Consensus 81 g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 81 GNKVTLDWAKPKGE 94 (102)
T ss_dssp TEECEEEECCCCCS
T ss_pred CeEEEEEEecCCCC
Confidence 99999999876543
No 252
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=118.31 Aligned_cols=72 Identities=25% Similarity=0.451 Sum_probs=67.5
Q ss_pred ceEEEecCCCCC------CHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCe-eEE
Q psy2983 115 MRLYIGSLHFNI------TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGR-PMK 187 (370)
Q Consensus 115 ~~l~V~nlp~~~------t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~-~l~ 187 (370)
++|||+|||..+ ++++|+++|++||.|..+.+.+ .+|.++|||||+|.+.++|.+|+..|||..+.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 7799999999999999999873 5899999999999999999999999999999999 887
Q ss_pred E
Q psy2983 188 V 188 (370)
Q Consensus 188 V 188 (370)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 253
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.8e-16 Score=120.84 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=74.2
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEE
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPII 88 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~ 88 (370)
.+...+.++|||+|||..+++++|+++|++||.| .++++ .+++++|||||+|.+.++|.+|++ +++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 3456788999999999999999999999999987 55666 678899999999999999999997 999999999999
Q ss_pred Eecccccc
Q psy2983 89 VQPTQAEK 96 (370)
Q Consensus 89 v~~~~~~~ 96 (370)
|.++....
T Consensus 85 v~~a~~~~ 92 (101)
T 2fc9_A 85 LELQGPRG 92 (101)
T ss_dssp EEECSSCC
T ss_pred EEEcCCCC
Confidence 99987653
No 254
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-16 Score=124.38 Aligned_cols=83 Identities=29% Similarity=0.502 Sum_probs=76.0
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
...++|||+|||+.+++++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45689999999999999999999999999988 666776789999999999999999999999 9999999999999998
Q ss_pred ecCCC
Q psy2983 192 TDRNE 196 (370)
Q Consensus 192 ~~~~~ 196 (370)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 77654
No 255
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=7.2e-16 Score=124.93 Aligned_cols=82 Identities=16% Similarity=0.321 Sum_probs=73.6
Q ss_pred CCCceEEEecCCCCCCHHHHH----hcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLR----GIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~----~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 187 (370)
.+.++|||+|||+.+++++|+ ++|++||.|..|.+. .+|.++|||||+|.+.++|..|+..|||..+.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 345789999999999999876 699999999998774 3688999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q psy2983 188 VGTVTDRNE 196 (370)
Q Consensus 188 V~~~~~~~~ 196 (370)
|.++..+..
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999877544
No 256
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.63 E-value=6.4e-16 Score=122.16 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=71.3
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCC-ceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFG-KIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....+|||+|||+++++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3457999999999999999999999999 899998853 35799999999999999999999999999999999999
Q ss_pred eecC
Q psy2983 191 VTDR 194 (370)
Q Consensus 191 ~~~~ 194 (370)
+..+
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 7653
No 257
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.6e-16 Score=116.43 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=71.7
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-c-cCCccCCee
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L-NGQKLLGIP 86 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l-~g~~i~g~~ 86 (370)
.++.....++|||+|||..+++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++ + +|..+.|++
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 3455678899999999999999999999999999999999863 7999999999999999997 7 999999999
Q ss_pred EEEeccc
Q psy2983 87 IIVQPTQ 93 (370)
Q Consensus 87 l~v~~~~ 93 (370)
|.|.+++
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9998763
No 258
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-16 Score=126.09 Aligned_cols=86 Identities=24% Similarity=0.383 Sum_probs=73.0
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEe
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQ 90 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~ 90 (370)
...++++|||+|||..+|+++|+++|+.||.|..+.+..+..+++++|||||+|.+.++|.+|++ |+|..+.|++|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567999999999999999999999999998443332222368889999999999999999996 99999999999999
Q ss_pred ccccccc
Q psy2983 91 PTQAEKN 97 (370)
Q Consensus 91 ~~~~~~~ 97 (370)
++.....
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9876543
No 259
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.4e-15 Score=115.99 Aligned_cols=79 Identities=27% Similarity=0.474 Sum_probs=72.4
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeC--CeeEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA--GRPMKVG 189 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~--g~~l~V~ 189 (370)
.+.++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|||..+. |+.|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 44579999999999999999999999999999988743 789999999999999999999999999 9999999
Q ss_pred EeecCCC
Q psy2983 190 TVTDRNE 196 (370)
Q Consensus 190 ~~~~~~~ 196 (370)
++.++..
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9887643
No 260
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=118.43 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=74.0
Q ss_pred CCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCee
Q psy2983 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIP 86 (370)
Q Consensus 8 ~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~ 86 (370)
..+....+.++|||+|||..+++++|+++|++||+|.++.+.++ +|||||+|.+.++|.+|++ ++|..+.|++
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 7 GGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp CCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 33445578899999999999999999999999999999998753 7899999999999999995 9999999999
Q ss_pred EEEecccccc
Q psy2983 87 IIVQPTQAEK 96 (370)
Q Consensus 87 l~v~~~~~~~ 96 (370)
|.|.++....
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpj_A 81 LRVRFACHSA 90 (99)
T ss_dssp CEEEESSCCS
T ss_pred EEEEEcCCCC
Confidence 9999987543
No 261
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.62 E-value=1.3e-16 Score=116.97 Aligned_cols=75 Identities=25% Similarity=0.521 Sum_probs=71.4
Q ss_pred eEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 116 ~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
+|||+|||+.+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+. +++..+.|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998899999999999999999999999 5999999999999864
No 262
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-15 Score=113.52 Aligned_cols=75 Identities=32% Similarity=0.431 Sum_probs=69.7
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHh-CCceeCCeeEEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL-NGFELAGRPMKVGT 190 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l-~g~~i~g~~l~V~~ 190 (370)
...++|||+|||..+++++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|+..| +|..+.|++|+|.+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 45578999999999999999999999999999999864 799999999999999999998 99999999999998
Q ss_pred ee
Q psy2983 191 VT 192 (370)
Q Consensus 191 ~~ 192 (370)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 263
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=3e-16 Score=123.46 Aligned_cols=81 Identities=19% Similarity=0.310 Sum_probs=75.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCc---eeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGK---IDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~---i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 187 (370)
.....+|||+|||+++++++|+++|+.||. |..++++.++. |+++|||||+|.+.++|.+|+. +|+..++|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345689999999999999999999999998 89999999975 9999999999999999999999 999999999999
Q ss_pred EEEeec
Q psy2983 188 VGTVTD 193 (370)
Q Consensus 188 V~~~~~ 193 (370)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 988654
No 264
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=119.13 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=71.8
Q ss_pred CCCCceEEEecCCCC-CCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhC--CceeCCeeEE
Q psy2983 111 TGGPMRLYIGSLHFN-ITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLN--GFELAGRPMK 187 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~-~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~--g~~i~g~~l~ 187 (370)
..+.++|||+|||++ +++++|+++|++||.|.++.+++ ++|||||+|.+.++|.+|+..|+ +..+.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345689999999998 99999999999999999999974 37999999999999999999886 4569999999
Q ss_pred EEEeecCCCC
Q psy2983 188 VGTVTDRNES 197 (370)
Q Consensus 188 V~~~~~~~~~ 197 (370)
|.++..+...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999776554
No 265
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=3.2e-17 Score=131.03 Aligned_cols=86 Identities=27% Similarity=0.534 Sum_probs=79.9
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeE--------EEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCcc
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRD--------VRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKL 82 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~--------v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i 82 (370)
...+.++|||+|||..+++++|+++|++||.|.. +.+++++.+++++|||||+|.+.++|.+|++ |+|..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567899999999999999999999999999998 9999998889999999999999999999997 999999
Q ss_pred CCeeEEEeccccccc
Q psy2983 83 LGIPIIVQPTQAEKN 97 (370)
Q Consensus 83 ~g~~l~v~~~~~~~~ 97 (370)
.|++|.|.++.....
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999876543
No 266
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=120.26 Aligned_cols=77 Identities=25% Similarity=0.477 Sum_probs=71.7
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
..+|||+|||+++++++|+++|++| .|..|+++.++ .|+++|||||+|.+.++|.+|+ .+|+..++||.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 89999999997 5999999999999999999999 5999999999999987643
No 267
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=3.7e-16 Score=116.51 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEecc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPT 92 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~~ 92 (370)
..+.-|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++ ||+..+.|++|+|..+
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3567899999999999999999999999999999864 58999999999999999996 9999999999999887
Q ss_pred c
Q psy2983 93 Q 93 (370)
Q Consensus 93 ~ 93 (370)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 268
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=116.06 Aligned_cols=77 Identities=21% Similarity=0.396 Sum_probs=70.9
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
..+.++|||+|||.++++++|+++|++||.|.++.+. +|||||+|.+.++|.+|++ +++..+.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4578999999999999999999999999999999986 5899999999999999995 999999999999999
Q ss_pred cccccc
Q psy2983 92 TQAEKN 97 (370)
Q Consensus 92 ~~~~~~ 97 (370)
+.....
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876543
No 269
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.6e-16 Score=126.77 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCe----eEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEE
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKV----RDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIV 89 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v----~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v 89 (370)
.+.++|||+|||+++|+++|+++|++||.| .+|.|+++ .+++++|||||+|.+.++|.+|++.++..+.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 567899999999999999999999999975 68999998 4899999999999999999999988999999999999
Q ss_pred ecccc
Q psy2983 90 QPTQA 94 (370)
Q Consensus 90 ~~~~~ 94 (370)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87654
No 270
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=6.3e-16 Score=119.17 Aligned_cols=82 Identities=26% Similarity=0.504 Sum_probs=74.9
Q ss_pred CCCceEEEecCCCCCCHHHHH----hcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLR----GIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~----~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 187 (370)
.+.++|||+|||..+++++|+ ++|++||.|..+.+.. +|.++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 345799999999999999999 9999999999998862 678899999999999999999999999999999999
Q ss_pred EEEeecCCC
Q psy2983 188 VGTVTDRNE 196 (370)
Q Consensus 188 V~~~~~~~~ 196 (370)
|.++.++..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999877543
No 271
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=117.58 Aligned_cols=80 Identities=34% Similarity=0.515 Sum_probs=73.0
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
...++|||+|||+.+++++|+++|++||.|..+ ..+|.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 456899999999999999999999999988776 247899999999999999999999999999999999999998
Q ss_pred ecCCC
Q psy2983 192 TDRNE 196 (370)
Q Consensus 192 ~~~~~ 196 (370)
.++..
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 77654
No 272
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.61 E-value=1.8e-15 Score=119.18 Aligned_cols=79 Identities=28% Similarity=0.595 Sum_probs=71.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q psy2983 110 GTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189 (370)
Q Consensus 110 ~~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~ 189 (370)
.....++|||+|||..+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34556899999999999999999999999999999987 7899999999999999999999999999999999
Q ss_pred EeecCCC
Q psy2983 190 TVTDRNE 196 (370)
Q Consensus 190 ~~~~~~~ 196 (370)
++.++..
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9876543
No 273
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.61 E-value=1.2e-15 Score=136.47 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVG--KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G--~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
..++|||+|||..+|+++|+++|+.|| .|.+|+|++|+.+++++|||||+|.+.++|.+||+ |++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999999999997 999999999999998
Q ss_pred cccc
Q psy2983 92 TQAE 95 (370)
Q Consensus 92 ~~~~ 95 (370)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 7643
No 274
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=117.48 Aligned_cols=79 Identities=16% Similarity=0.331 Sum_probs=71.5
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
...++|||+|||+.+++++|+++|++||.|. +.++. +.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4467999999999999999999999999996 66663 467999999999999999999999999999999999998
Q ss_pred ecCC
Q psy2983 192 TDRN 195 (370)
Q Consensus 192 ~~~~ 195 (370)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7754
No 275
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.4e-16 Score=123.05 Aligned_cols=86 Identities=26% Similarity=0.374 Sum_probs=74.5
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
.+.++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45689999999999999999999999999854333222238899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2983 192 TDRNES 197 (370)
Q Consensus 192 ~~~~~~ 197 (370)
.++...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 876554
No 276
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.1e-15 Score=117.81 Aligned_cols=79 Identities=18% Similarity=0.215 Sum_probs=73.0
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCC-----eeE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG-----RPM 186 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g-----~~l 186 (370)
....+|||+|||+.+++++|+++|++||.|..+.++.+ |||||+|.+.++|.+|++.|||..+.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 44689999999999999999999999999999999865 899999999999999999999999999 999
Q ss_pred EEEEeecCCCC
Q psy2983 187 KVGTVTDRNES 197 (370)
Q Consensus 187 ~V~~~~~~~~~ 197 (370)
+|.++.++...
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99998876554
No 277
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=9.5e-16 Score=118.32 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=72.7
Q ss_pred CCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCee
Q psy2983 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIP 86 (370)
Q Consensus 8 ~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~ 86 (370)
.........++|||+|||..+++++|+++|+.||.|. +.++.+ +++|||||+|.+.++|.+|++ |+|..+.|+.
T Consensus 11 ~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 11 PPGEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp CCCSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3344566789999999999999999999999999997 666654 568999999999999999995 9999999999
Q ss_pred EEEeccccc
Q psy2983 87 IIVQPTQAE 95 (370)
Q Consensus 87 l~v~~~~~~ 95 (370)
|.|.++...
T Consensus 86 l~V~~a~~~ 94 (97)
T 2e5j_A 86 LRVALARQQ 94 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999988654
No 278
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.7e-15 Score=118.31 Aligned_cols=81 Identities=26% Similarity=0.514 Sum_probs=74.4
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
...++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 34579999999999999999999999999999999865 789999999999999999999999999999999999
Q ss_pred ecCCCCc
Q psy2983 192 TDRNESV 198 (370)
Q Consensus 192 ~~~~~~~ 198 (370)
.++....
T Consensus 97 ~~~~~~~ 103 (109)
T 1x4g_A 97 KESPDMT 103 (109)
T ss_dssp CCCCSSC
T ss_pred CCCCCCC
Confidence 8766543
No 279
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=118.67 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=72.6
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCC-----
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLG----- 84 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g----- 84 (370)
+..+..++|||+|||.++++++|+++|++||.|..+.++.+ |||||+|.+.++|.+|++ |+|..|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 44567899999999999999999999999999999999875 899999999999999997 99999999
Q ss_pred eeEEEecccccc
Q psy2983 85 IPIIVQPTQAEK 96 (370)
Q Consensus 85 ~~l~v~~~~~~~ 96 (370)
+.|.|.++....
T Consensus 83 ~~i~V~~a~~~~ 94 (108)
T 1x4c_A 83 AYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEESSCCS
T ss_pred eEEEEEeCCCCC
Confidence 999999987644
No 280
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.6e-15 Score=117.80 Aligned_cols=76 Identities=28% Similarity=0.433 Sum_probs=70.5
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
..++|||+|||..+++++|+++|++||.|..+++. .++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 35799999999999999999999999999999987 348999999999999999999999999999999999876
Q ss_pred cC
Q psy2983 193 DR 194 (370)
Q Consensus 193 ~~ 194 (370)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 281
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.3e-15 Score=121.12 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=70.7
Q ss_pred ceEEEecC----CCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECC----HHH----HHHHHH--HhCCce
Q psy2983 115 MRLYIGSL----HFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHS----ADD----AKKAQE--QLNGFE 180 (370)
Q Consensus 115 ~~l~V~nl----p~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~----~~~----a~~A~~--~l~g~~ 180 (370)
.+|||+|| |+.+++++|+++|++||+|.++.++.|+.||.++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 433 888988 789999
Q ss_pred eCCeeEEEEEe
Q psy2983 181 LAGRPMKVGTV 191 (370)
Q Consensus 181 i~g~~l~V~~~ 191 (370)
|.|++|+|...
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999874
No 282
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=4e-16 Score=120.12 Aligned_cols=82 Identities=30% Similarity=0.417 Sum_probs=73.1
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeE
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPI 87 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l 87 (370)
.+...++.++|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++ ++|..+.|++|
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 83 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 83 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34456678999999999999999999999999988766 3458899999999999999999997 99999999999
Q ss_pred EEeccccc
Q psy2983 88 IVQPTQAE 95 (370)
Q Consensus 88 ~v~~~~~~ 95 (370)
.|.++...
T Consensus 84 ~v~~a~~~ 91 (96)
T 1fjc_A 84 SLYYTGEK 91 (96)
T ss_dssp EEEECSSS
T ss_pred EEEEcCCC
Confidence 99998654
No 283
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.1e-15 Score=113.06 Aligned_cols=78 Identities=29% Similarity=0.541 Sum_probs=71.6
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
...++|||+|||+.+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 456789999999999999999999999999999987 449999999999999999999999999999999998
Q ss_pred ecCCCC
Q psy2983 192 TDRNES 197 (370)
Q Consensus 192 ~~~~~~ 197 (370)
.++...
T Consensus 79 ~~~~~~ 84 (90)
T 2dnp_A 79 TKGQKK 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 776543
No 284
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.60 E-value=3.1e-16 Score=120.94 Aligned_cols=83 Identities=25% Similarity=0.520 Sum_probs=73.5
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCe
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLE----EFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGI 85 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~----~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~ 85 (370)
+...++++|||+|||.++++++|+ ++|++||.|.++.+.+ ++.++|||||+|.+.++|..|++ ++|..+.|+
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 345688999999999999999999 9999999999998874 46788999999999999999996 999999999
Q ss_pred eEEEecccccc
Q psy2983 86 PIIVQPTQAEK 96 (370)
Q Consensus 86 ~l~v~~~~~~~ 96 (370)
+|.|.++....
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999987643
No 285
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=4.5e-15 Score=114.55 Aligned_cols=76 Identities=26% Similarity=0.491 Sum_probs=70.3
Q ss_pred CCCCceEEEecCCC-CCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q psy2983 111 TGGPMRLYIGSLHF-NITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189 (370)
Q Consensus 111 ~~~~~~l~V~nlp~-~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~ 189 (370)
....++|||+|||. .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34568999999998 99999999999999999999883 7899999999999999999999999999999999
Q ss_pred EeecC
Q psy2983 190 TVTDR 194 (370)
Q Consensus 190 ~~~~~ 194 (370)
++..+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98664
No 286
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=9.2e-16 Score=121.06 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=71.3
Q ss_pred CcccCCCCeEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-cc--CCccCCe
Q psy2983 10 SPEERDARTIFCMQLSQR-IRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LN--GQKLLGI 85 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~-~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~--g~~i~g~ 85 (370)
.....++++|||+|||.+ +++++|+++|++||.|.+|++++ ++|||||+|.+.++|..|++ ++ +..+.|+
T Consensus 19 ~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr 92 (112)
T 1x4f_A 19 DQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGR 92 (112)
T ss_dssp CCSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred cccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 344678899999999998 99999999999999999999964 37999999999999999996 64 5679999
Q ss_pred eEEEecccccc
Q psy2983 86 PIIVQPTQAEK 96 (370)
Q Consensus 86 ~l~v~~~~~~~ 96 (370)
+|+|.+++...
T Consensus 93 ~l~V~~a~~~~ 103 (112)
T 1x4f_A 93 CVKVDLSEKYK 103 (112)
T ss_dssp CCEEEEECSCS
T ss_pred EEEEEECcccc
Confidence 99999987544
No 287
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=2.6e-16 Score=129.48 Aligned_cols=124 Identities=13% Similarity=0.137 Sum_probs=74.2
Q ss_pred cEEEEEecCCCChHHHhhccCCccCCeeEEEecccccccccCCCCCCCCCCCCCCCceEEEecCCCCCCHHHHHhcccCC
Q psy2983 59 GIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPF 138 (370)
Q Consensus 59 g~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~f~~~ 138 (370)
|+||.+|..++.+..++.--.....|...--.... ...........+|||+|||+++++++|+++|++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g~-----------~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~ 70 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSGD-----------SEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPL 70 (139)
T ss_dssp ------------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSC
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCCC-----------cccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 67888888888777666311111222211000000 0011123345789999999999999999999999
Q ss_pred CceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecCCC
Q psy2983 139 GKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196 (370)
Q Consensus 139 G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~~~ 196 (370)
| +..|.++.|+. |+++|||||+|.+.++|.+|+ .+|+..+.|+.|+|..+.....
T Consensus 71 G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 71 N-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp C-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred C-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 9 67999999974 999999999999999999999 6899999999999988766543
No 288
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=1e-15 Score=119.21 Aligned_cols=81 Identities=27% Similarity=0.657 Sum_probs=75.5
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
.+++|||+|||+.+++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45789999999999999999999999999999999998 99999999999999999999999 9999999999999987
Q ss_pred cCCC
Q psy2983 193 DRNE 196 (370)
Q Consensus 193 ~~~~ 196 (370)
.+..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6543
No 289
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=1.5e-15 Score=117.35 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=69.4
Q ss_pred CCCcccCCCCeEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCe
Q psy2983 8 DLSPEERDARTIFCMQLSQ-RIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGI 85 (370)
Q Consensus 8 ~~~~~~~~~r~v~V~nLp~-~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~ 85 (370)
......+++++|||+|||. ++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++ ++|..+.|+
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 14 LVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp -----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred cccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3344567889999999998 99999999999999999999883 6899999999999999996 999999999
Q ss_pred eEEEecccc
Q psy2983 86 PIIVQPTQA 94 (370)
Q Consensus 86 ~l~v~~~~~ 94 (370)
.|.|.++..
T Consensus 86 ~l~V~~a~~ 94 (97)
T 2xnq_A 86 KLILEVSSS 94 (97)
T ss_dssp ECEEEECCC
T ss_pred EEEEEecCC
Confidence 999998764
No 290
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-14 Score=112.34 Aligned_cols=79 Identities=25% Similarity=0.523 Sum_probs=71.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCC--CceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPF--GKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~--G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V 188 (370)
....++|||+|||+.+++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 899988764 679999999999999999999999999999999
Q ss_pred EEeecCCCC
Q psy2983 189 GTVTDRNES 197 (370)
Q Consensus 189 ~~~~~~~~~ 197 (370)
.++.++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpd_A 84 TLAKPVDKD 92 (99)
T ss_dssp ECCCCCCCC
T ss_pred EECCCCCCC
Confidence 998876543
No 291
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=117.56 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=71.4
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccC--CeeEE
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLL--GIPII 88 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~--g~~l~ 88 (370)
...+.++|||+|||..+++++|+++|++||.|.++.+.++ +|||||+|.+.++|.+|++ ++|..+. |++|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 4456799999999999999999999999999999998753 6899999999999999996 9999999 99999
Q ss_pred Eeccccc
Q psy2983 89 VQPTQAE 95 (370)
Q Consensus 89 v~~~~~~ 95 (370)
|.++...
T Consensus 87 V~~a~~~ 93 (97)
T 1why_A 87 VDFAKSG 93 (97)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998764
No 292
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.60 E-value=1.1e-15 Score=136.62 Aligned_cols=82 Identities=28% Similarity=0.437 Sum_probs=77.0
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCC--ceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFG--KIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G--~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
...+|||+|||+.+++++|+++|++|| .|..|+|+.|+.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q psy2983 191 VTDR 194 (370)
Q Consensus 191 ~~~~ 194 (370)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8653
No 293
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=7.5e-17 Score=128.83 Aligned_cols=85 Identities=29% Similarity=0.487 Sum_probs=79.3
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceee--------EEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCe
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDN--------IQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGR 184 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~--------v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~ 184 (370)
+.++|||+|||..+++++|+++|++||.|.. +.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4578999999999999999999999999998 89999988999999999999999999999999999999999
Q ss_pred eEEEEEeecCCCC
Q psy2983 185 PMKVGTVTDRNES 197 (370)
Q Consensus 185 ~l~V~~~~~~~~~ 197 (370)
.|+|.++.++...
T Consensus 86 ~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 86 PIKVSFATRRADF 98 (116)
Confidence 9999998776543
No 294
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.59 E-value=7e-15 Score=114.72 Aligned_cols=78 Identities=29% Similarity=0.556 Sum_probs=71.9
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
.+.++|||+|||+.+++++|+++|++||.|..+.++ +|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 456789999999999999999999999999999886 559999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2983 192 TDRNES 197 (370)
Q Consensus 192 ~~~~~~ 197 (370)
.++...
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 776554
No 295
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.59 E-value=2.2e-16 Score=129.95 Aligned_cols=83 Identities=18% Similarity=0.191 Sum_probs=73.8
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEe
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQ 90 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~ 90 (370)
......++|||+|||.++|+++|+++|++|| |.+|.|++|+. ++++|||||+|.+.++|.+|+++++..+.|+.|.|.
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 118 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEE
Confidence 3456778999999999999999999999999 67999999976 999999999999999999999999999999999998
Q ss_pred ccccc
Q psy2983 91 PTQAE 95 (370)
Q Consensus 91 ~~~~~ 95 (370)
.+...
T Consensus 119 ~a~~~ 123 (139)
T 2hgn_A 119 LNSTT 123 (139)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 77643
No 296
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.9e-15 Score=114.86 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=70.0
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEecc
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~ 92 (370)
.+..++|||+|||..+++++|+++|+.||.|.+| +.++.+++ ||||+|.+.++|.+|++++|..+.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCS
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEEC
Confidence 4567899999999999999999999999999987 66665554 999999999999999999999999999999877
Q ss_pred ccc
Q psy2983 93 QAE 95 (370)
Q Consensus 93 ~~~ 95 (370)
...
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 543
No 297
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.59 E-value=1.6e-15 Score=119.55 Aligned_cols=78 Identities=22% Similarity=0.502 Sum_probs=70.8
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEE
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV 89 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v 89 (370)
......++|||+|||.++++++|+++|++||.|.++.+. +|||||+|.+.++|.+|++ |+|..+.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 445678999999999999999999999999999999987 6899999999999999996 9999999999999
Q ss_pred ecccccc
Q psy2983 90 QPTQAEK 96 (370)
Q Consensus 90 ~~~~~~~ 96 (370)
.++....
T Consensus 98 ~~a~~~~ 104 (108)
T 2jvo_A 98 VYSKLPA 104 (108)
T ss_dssp ESCSCCC
T ss_pred EEecCCC
Confidence 9987543
No 298
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=2.6e-15 Score=118.60 Aligned_cols=76 Identities=24% Similarity=0.489 Sum_probs=70.3
Q ss_pred CCceEEEecCCCC-CCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 113 GPMRLYIGSLHFN-ITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 113 ~~~~l~V~nlp~~-~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
..++|||+|||+. +++++|+++|++||.|..+.+ ++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3479999999999 999999999999999999988 4889999999999999999999999999999999998
Q ss_pred ecCCC
Q psy2983 192 TDRNE 196 (370)
Q Consensus 192 ~~~~~ 196 (370)
.++..
T Consensus 98 ~~~~~ 102 (110)
T 1wf1_A 98 GEPKP 102 (110)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 75444
No 299
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=119.16 Aligned_cols=80 Identities=19% Similarity=0.388 Sum_probs=73.0
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEe
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQ 90 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~ 90 (370)
.....++|||+|||..+++++|+++|+.||.|.++.++++ +|||||+|.+.++|.+|++ |+|..+.|++|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3467899999999999999999999999999999999875 6899999999999999994 99999999999999
Q ss_pred ccccccc
Q psy2983 91 PTQAEKN 97 (370)
Q Consensus 91 ~~~~~~~ 97 (370)
++.....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9876543
No 300
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.2e-15 Score=114.15 Aligned_cols=78 Identities=15% Similarity=0.290 Sum_probs=71.2
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEE
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV 89 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v 89 (370)
....+.++|||+|||..+++++|+++|++||.|.++.+++ +||||+|.+.++|.+|++ ++|..+.|+.|.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 4456789999999999999999999999999999999863 499999999999999995 9999999999999
Q ss_pred ecccccc
Q psy2983 90 QPTQAEK 96 (370)
Q Consensus 90 ~~~~~~~ 96 (370)
.++....
T Consensus 77 ~~a~~~~ 83 (92)
T 2dgt_A 77 QLSTSRL 83 (92)
T ss_dssp EESSCCC
T ss_pred EEccCCC
Confidence 9987654
No 301
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=5e-15 Score=117.00 Aligned_cols=75 Identities=23% Similarity=0.433 Sum_probs=68.8
Q ss_pred cCCCCeEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh-hccCCccCCeeEEEe
Q psy2983 13 ERDARTIFCMQLSQR-IRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGIPIIVQ 90 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~-~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~i~g~~l~v~ 90 (370)
....++|||+|||.. +++++|+++|++||+|.++.+ ++|||||+|.+.++|.+|+ .|+|..+.|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345689999999999 999999999999999999988 4799999999999999999 599999999999999
Q ss_pred ccccc
Q psy2983 91 PTQAE 95 (370)
Q Consensus 91 ~~~~~ 95 (370)
++...
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 98643
No 302
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.58 E-value=4.4e-15 Score=115.87 Aligned_cols=78 Identities=26% Similarity=0.438 Sum_probs=70.8
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
..+.++|||+|||..+|+++|+++|++||.|.++.++ ++||||+|.+.++|.+|++ |++..+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 4567999999999999999999999999999999886 4699999999999999997 999999999999999
Q ss_pred ccccccc
Q psy2983 92 TQAEKNR 98 (370)
Q Consensus 92 ~~~~~~~ 98 (370)
+......
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 8765443
No 303
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.4e-15 Score=118.20 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=69.5
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
....++|||+|||.++++++|+++|+.||.|.++++. +++|||||+|.+.++|.+|++ ++|..+.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3457899999999999999999999999999999987 347999999999999999995 999999999999988
Q ss_pred ccc
Q psy2983 92 TQA 94 (370)
Q Consensus 92 ~~~ 94 (370)
+..
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 753
No 304
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=1.4e-15 Score=114.63 Aligned_cols=74 Identities=22% Similarity=0.411 Sum_probs=68.5
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCc
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSV----G-------KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQK 81 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~----G-------~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~ 81 (370)
.++.++|||+|||.++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+.++|..
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 4678999999999999999999999999 8 8999988654 799999999999999999999999
Q ss_pred cCCeeEEEecc
Q psy2983 82 LLGIPIIVQPT 92 (370)
Q Consensus 82 i~g~~l~v~~~ 92 (370)
+.|+.|.|+++
T Consensus 77 ~~g~~l~V~rp 87 (87)
T 2hzc_A 77 FQGQSLKIRRP 87 (87)
T ss_dssp ETTEECEEECC
T ss_pred ECCeEEEEeCC
Confidence 99999999763
No 305
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=1.8e-15 Score=117.55 Aligned_cols=78 Identities=23% Similarity=0.467 Sum_probs=72.6
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecC
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~ 194 (370)
++|||+|||+.+++++|+++|++||.|..+.+..+ ++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 37999999999999999999999999999999866 6899999999999999999999999999999999998776
Q ss_pred CCC
Q psy2983 195 NES 197 (370)
Q Consensus 195 ~~~ 197 (370)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 306
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.58 E-value=1.1e-15 Score=120.81 Aligned_cols=79 Identities=22% Similarity=0.230 Sum_probs=70.5
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEE
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVG-KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV 89 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G-~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v 89 (370)
..+..++|||+|||.++++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|.+|++ ++|..+.|+.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999999 899998854 2468999999999999999995 9999999999999
Q ss_pred ecccc
Q psy2983 90 QPTQA 94 (370)
Q Consensus 90 ~~~~~ 94 (370)
.++..
T Consensus 100 ~~a~~ 104 (111)
T 2jvr_A 100 ERDDN 104 (111)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 98764
No 307
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.9e-15 Score=113.27 Aligned_cols=79 Identities=32% Similarity=0.495 Sum_probs=70.4
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCc-eeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCC-ceeCCeeEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGK-IDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNG-FELAGRPMKVG 189 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~-i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~i~g~~l~V~ 189 (370)
.+.++|||+|||+.+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||| ..+.|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 44578999999999999999999999999 6666553 478999999999999999999999 99999999999
Q ss_pred EeecCCCC
Q psy2983 190 TVTDRNES 197 (370)
Q Consensus 190 ~~~~~~~~ 197 (370)
++.++...
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99876553
No 308
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=5.6e-15 Score=113.74 Aligned_cols=78 Identities=26% Similarity=0.471 Sum_probs=71.2
Q ss_pred CCCceEEEecCCC-CCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 112 GGPMRLYIGSLHF-NITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 112 ~~~~~l~V~nlp~-~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
.+.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|||..+.|++|+|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4568999999998 99999999999999999999984 78999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2983 191 VTDRNES 197 (370)
Q Consensus 191 ~~~~~~~ 197 (370)
+.++...
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9776554
No 309
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.7e-15 Score=113.27 Aligned_cols=79 Identities=25% Similarity=0.398 Sum_probs=71.0
Q ss_pred CcccCCCCeEEEcCCCCCCcHHHHHHHhhcC--CCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCee
Q psy2983 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSV--GKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIP 86 (370)
Q Consensus 10 ~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~--G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~ 86 (370)
.....+.++|||+|||..+++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|++ ++|..+.|+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3445678999999999999999999999999 899998764 5799999999999999997 9999999999
Q ss_pred EEEecccccc
Q psy2983 87 IIVQPTQAEK 96 (370)
Q Consensus 87 l~v~~~~~~~ 96 (370)
|.|.++....
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpd_A 81 IEVTLAKPVD 90 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCC
Confidence 9999987543
No 310
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.57 E-value=6.8e-15 Score=128.00 Aligned_cols=126 Identities=24% Similarity=0.449 Sum_probs=104.1
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCC-----------ceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeC
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFG-----------KIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA 182 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G-----------~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~ 182 (370)
.++|||+|||+++++++|+++|++|| .|..+.+ +.++|||||+|.+.++|.+|+ .|||..+.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 47899999999999999999999994 4544444 456899999999999999999 79999999
Q ss_pred CeeEEEEEeecCCC---------------------------CcCCCCCCCCHHHHHHhcccCCceeeeeeeeccc----c
Q psy2983 183 GRPMKVGTVTDRNE---------------------------SVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLA----E 231 (370)
Q Consensus 183 g~~l~V~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~----~ 231 (370)
|+.|+|.++.+... .+++++..+++++++..|..+|.+..+.++.+.. +
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 99999998765311 1557888999999999999999999998887632 3
Q ss_pred CCC---CCChHHHHHHHh
Q psy2983 232 GTG---LELPPAAASALN 246 (370)
Q Consensus 232 ~~~---~~~~~~a~~a~~ 246 (370)
+++ |..+..|..|+.
T Consensus 157 g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp EEEEEEESSSSHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHH
Confidence 444 567777777766
No 311
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4.5e-15 Score=117.54 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=70.4
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
.++|||+|||+.+++++|+++|++||.|..+.+.+ ++|||||+|.+.++|.+|+..|||..+.|+.|+|.++..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 46899999999999999999999999999998864 478999999999999999999999999999999999876
Q ss_pred CC
Q psy2983 194 RN 195 (370)
Q Consensus 194 ~~ 195 (370)
..
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 312
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.57 E-value=7.5e-15 Score=116.79 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=69.9
Q ss_pred CeEEEcCC----CCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecC----CCC----hHHHhh---ccCCc
Q psy2983 17 RTIFCMQL----SQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD----PES----VPLAMG---LNGQK 81 (370)
Q Consensus 17 r~v~V~nL----p~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~----~e~----A~~Al~---l~g~~ 81 (370)
..|||+|| |+.+++.+|+++|+.||+|.++.++.|+.||+++|||||+|.+ +++ |.+|+. ++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999997 666 778874 79999
Q ss_pred cCCeeEEEeccc
Q psy2983 82 LLGIPIIVQPTQ 93 (370)
Q Consensus 82 i~g~~l~v~~~~ 93 (370)
|.|++|+|....
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998654
No 313
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.57 E-value=1.4e-14 Score=116.98 Aligned_cols=81 Identities=17% Similarity=0.355 Sum_probs=72.4
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccE-EEEEECCHHHHHHHHHHhCCceeCC--eeEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGY-GFITFHSADDAKKAQEQLNGFELAG--RPMKV 188 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~i~g--~~l~V 188 (370)
..-.+|||+||++.+|+++|+++|++||.|.+|.+..+. +|+ |||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 344679999999999999999999999999999887642 677 9999999999999999999999998 99999
Q ss_pred EEeecCCCC
Q psy2983 189 GTVTDRNES 197 (370)
Q Consensus 189 ~~~~~~~~~ 197 (370)
.++++....
T Consensus 101 ~~ak~~~l~ 109 (130)
T 3zzy_A 101 DFSKLTSLN 109 (130)
T ss_dssp EECSCSSCC
T ss_pred EecCCCcee
Confidence 998876543
No 314
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3.7e-15 Score=113.26 Aligned_cols=77 Identities=19% Similarity=0.388 Sum_probs=70.5
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEe
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQ 90 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~ 90 (370)
...+.++|||+|||.++|+++|+++|++||.|.++.+++ +||||+|.+.++|.+|++ ++|..+.|++|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 356789999999999999999999999999999999873 499999999999999996 99999999999999
Q ss_pred cccccc
Q psy2983 91 PTQAEK 96 (370)
Q Consensus 91 ~~~~~~ 96 (370)
++....
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 987653
No 315
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.57 E-value=5.8e-15 Score=126.77 Aligned_cols=85 Identities=28% Similarity=0.515 Sum_probs=79.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
.....+|||+|||+.+++++|+++|++||.|..|.+..+. +|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred eecCCC
Q psy2983 191 VTDRNE 196 (370)
Q Consensus 191 ~~~~~~ 196 (370)
+.....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 876443
No 316
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.3e-15 Score=121.17 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=72.2
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCce----eeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKI----DNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i----~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V 188 (370)
...+|||+|||+++|+++|+++|++||.| ..|.++.+. +|+++|||||+|.+.++|.+|+.. |+..+.||.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 34789999999999999999999999975 689999994 899999999999999999999995 999999999999
Q ss_pred EEeec
Q psy2983 189 GTVTD 193 (370)
Q Consensus 189 ~~~~~ 193 (370)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87643
No 317
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=1.1e-14 Score=110.15 Aligned_cols=76 Identities=13% Similarity=0.291 Sum_probs=69.8
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
..++|||+|||+.+++++|+++|++| .|..+++. .++|||||+|.+.++|.+|+..|||..+.|++|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 35789999999999999999999999 99999884 569999999999999999999999999999999999976
Q ss_pred cCC
Q psy2983 193 DRN 195 (370)
Q Consensus 193 ~~~ 195 (370)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 318
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.56 E-value=4.1e-15 Score=120.10 Aligned_cols=79 Identities=25% Similarity=0.346 Sum_probs=71.7
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCcee--eEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKID--NIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~--~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~ 189 (370)
....+|||+|||+++++++|+++|++| .|. .|.++.|+. |+++|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 345789999999999999999999999 566 899999975 9999999999999999999999 58899999999998
Q ss_pred Eeec
Q psy2983 190 TVTD 193 (370)
Q Consensus 190 ~~~~ 193 (370)
.+..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 319
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=9.3e-15 Score=112.36 Aligned_cols=80 Identities=25% Similarity=0.420 Sum_probs=71.7
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeE-EEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNI-QLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
...++|||+|||+.+++++|+++|++||.|..+ .++.++.+ |.|||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345789999999999999999999999999999 47777543 3499999999999999999999999999999999
Q ss_pred eecCC
Q psy2983 191 VTDRN 195 (370)
Q Consensus 191 ~~~~~ 195 (370)
+.++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 88763
No 320
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.56 E-value=3.6e-15 Score=124.55 Aligned_cols=82 Identities=24% Similarity=0.366 Sum_probs=74.4
Q ss_pred CCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeE
Q psy2983 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPI 87 (370)
Q Consensus 9 ~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l 87 (370)
........++|||+|||..+|+++|+++|++||.|.+++++++ ++|||||+|.+.++|..|++ ++|..+.|++|
T Consensus 66 ~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 66 HRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp CSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3445567899999999999999999999999999999999876 47999999999999999996 99999999999
Q ss_pred EEeccccc
Q psy2983 88 IVQPTQAE 95 (370)
Q Consensus 88 ~v~~~~~~ 95 (370)
.|.++...
T Consensus 141 ~v~~a~~~ 148 (150)
T 2i2y_A 141 RVELSNGE 148 (150)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99987653
No 321
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-15 Score=120.61 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=70.3
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEe
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQ 90 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~ 90 (370)
..+..++|||+|||..+++++|+++|++||.|.+|.+.+ ++|||||+|.+.++|..|++ |+|..+.|++|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345678999999999999999999999999999998864 47899999999999999996 99999999999999
Q ss_pred cccc
Q psy2983 91 PTQA 94 (370)
Q Consensus 91 ~~~~ 94 (370)
++..
T Consensus 80 ~a~~ 83 (111)
T 1whx_A 80 WAPI 83 (111)
T ss_dssp EEET
T ss_pred ECCC
Confidence 8764
No 322
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2e-14 Score=110.19 Aligned_cols=78 Identities=14% Similarity=0.349 Sum_probs=69.5
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
..++|||+|||+.+++++|+++|++||.|..| +.++.+|. ||||+|.+.++|.+|+. |||..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45799999999999999999999999999987 55655655 99999999999999999 99999999999999876
Q ss_pred cCCC
Q psy2983 193 DRNE 196 (370)
Q Consensus 193 ~~~~ 196 (370)
++..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 5544
No 323
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.7e-15 Score=113.95 Aligned_cols=78 Identities=21% Similarity=0.314 Sum_probs=68.9
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccC-CccCCeeEEE
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGK-VRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNG-QKLLGIPIIV 89 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~-v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g-~~i~g~~l~v 89 (370)
....++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++ ++| ..+.|++|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 356799999999999999999999999999 6666552 47999999999999999996 999 9999999999
Q ss_pred eccccccc
Q psy2983 90 QPTQAEKN 97 (370)
Q Consensus 90 ~~~~~~~~ 97 (370)
.++.....
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99876543
No 324
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=108.54 Aligned_cols=75 Identities=25% Similarity=0.346 Sum_probs=66.9
Q ss_pred Cce-EEEecCCCCCCHHH----HHhcccCC-CceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q psy2983 114 PMR-LYIGSLHFNITEDM----LRGIFEPF-GKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187 (370)
Q Consensus 114 ~~~-l~V~nlp~~~t~e~----l~~~f~~~-G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 187 (370)
+.+ |||+|||+.+++++ |+++|++| |.|..| +| |+|||+|.+.++|.+|++.|+|..+.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 445 99999999999988 55899999 599887 33 9999999999999999999999999999999
Q ss_pred EEEeecCCCCc
Q psy2983 188 VGTVTDRNESV 198 (370)
Q Consensus 188 V~~~~~~~~~~ 198 (370)
|.+++.+...+
T Consensus 78 v~~A~~~sd~~ 88 (96)
T 2diu_A 78 VSFTPKNRELC 88 (96)
T ss_dssp EESSCCSCCCC
T ss_pred EEecCCCccee
Confidence 99998877654
No 325
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.55 E-value=2.7e-15 Score=124.26 Aligned_cols=84 Identities=27% Similarity=0.429 Sum_probs=72.8
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeE------EEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCee
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNI------QLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRP 185 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v------~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 185 (370)
.+.++|||+|||+.+++++|+++|++||.|..+ .+.. ..+|.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 345799999999999999999999999998774 1111 137899999999999999999999999999999999
Q ss_pred EEEEEeecCCC
Q psy2983 186 MKVGTVTDRNE 196 (370)
Q Consensus 186 l~V~~~~~~~~ 196 (370)
|+|.++.+...
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999876543
No 326
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.2e-14 Score=108.96 Aligned_cols=78 Identities=26% Similarity=0.485 Sum_probs=70.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEE
Q psy2983 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~ 190 (370)
....++|||+|+ .+++++|+++|++||.|..+.+. .++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345679999995 89999999999999999999884 4589999999999999999999999999999999999
Q ss_pred eecCCC
Q psy2983 191 VTDRNE 196 (370)
Q Consensus 191 ~~~~~~ 196 (370)
+.++..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 877654
No 327
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=5e-14 Score=113.22 Aligned_cols=77 Identities=26% Similarity=0.396 Sum_probs=68.9
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccE-EEEEECCHHHHHHHHHHhCCceeCC--eeEEEEEe
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGY-GFITFHSADDAKKAQEQLNGFELAG--RPMKVGTV 191 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~i~g--~~l~V~~~ 191 (370)
..|||+||++.+++++|+++|++||.|.+|.++.. .|| |||+|.+.++|..|+..|||..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 46789999999999999999999999999998642 276 9999999999999999999999987 68999998
Q ss_pred ecCCCC
Q psy2983 192 TDRNES 197 (370)
Q Consensus 192 ~~~~~~ 197 (370)
+++...
T Consensus 100 k~~~l~ 105 (124)
T 2e5i_A 100 RPTRLN 105 (124)
T ss_dssp SCSCCC
T ss_pred cCCcce
Confidence 876543
No 328
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.2e-15 Score=115.13 Aligned_cols=76 Identities=20% Similarity=0.380 Sum_probs=68.4
Q ss_pred ccCCCCeEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEE
Q psy2983 12 EERDARTIFCMQLSQ-RIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV 89 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~-~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v 89 (370)
...+.++|||+|||. .+++++|+++|++||+|.++.+. +|||||+|.+.++|..|++ ++|..+.|++|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 346789999999998 99999999999999999999883 6899999999999999996 9999999999999
Q ss_pred eccccc
Q psy2983 90 QPTQAE 95 (370)
Q Consensus 90 ~~~~~~ 95 (370)
.++...
T Consensus 78 ~~a~~~ 83 (96)
T 2kvi_A 78 EVSSSN 83 (96)
T ss_dssp EEEECC
T ss_pred EEcCcC
Confidence 988654
No 329
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.3e-15 Score=117.22 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=66.2
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCC---CCeecEEEEEecCCCChHHHhh-ccCCccCCeeE
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKT---RRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPI 87 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~---~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l 87 (370)
..+.+++|||+|||.++++++|+++|++||+|. +.++.+..+ |+++|||||+|.+.++|.+|++ ++ .++|+.+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 456789999999999999999999999999999 888888777 7899999999999999999996 53 2566666
Q ss_pred EEec
Q psy2983 88 IVQP 91 (370)
Q Consensus 88 ~v~~ 91 (370)
.+..
T Consensus 81 ~~~~ 84 (114)
T 2dnl_A 81 LCVS 84 (114)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 5543
No 330
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=6.3e-15 Score=126.55 Aligned_cols=82 Identities=20% Similarity=0.300 Sum_probs=76.8
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
....++|||+|||..+++++|+++|+.||.|..|.+..+. ++.++|||||+|.+.++|.+|++ ++|..+.|++|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4557899999999999999999999999999999999998 89999999999999999999996 999999999999999
Q ss_pred cccc
Q psy2983 92 TQAE 95 (370)
Q Consensus 92 ~~~~ 95 (370)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8654
No 331
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.55 E-value=1.2e-14 Score=121.92 Aligned_cols=82 Identities=17% Similarity=0.317 Sum_probs=72.7
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCC--eeEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG--RPMKVG 189 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g--~~l~V~ 189 (370)
....+|||+||++.+++++|+++|++||.|.+|.+..+ .++|||||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 33467999999999999999999999999999998744 257899999999999999999999999966 999999
Q ss_pred EeecCCCC
Q psy2983 190 TVTDRNES 197 (370)
Q Consensus 190 ~~~~~~~~ 197 (370)
+++++...
T Consensus 120 ~Ak~~~l~ 127 (164)
T 1sjr_A 120 FSKLTSLN 127 (164)
T ss_dssp ECSSSSCC
T ss_pred EecCCccc
Confidence 99876443
No 332
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=110.89 Aligned_cols=82 Identities=18% Similarity=0.299 Sum_probs=71.8
Q ss_pred CCCCcccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh-hccCCccCCe
Q psy2983 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGI 85 (370)
Q Consensus 7 ~~~~~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~i~g~ 85 (370)
.......++.++|||+|| ++|+++|+++|++||.|.++.+. +++|||||+|.+.++|.+|+ .|+|..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 6 SGERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp SSCCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 334445567899999996 89999999999999999999883 45799999999999999999 4999999999
Q ss_pred eEEEecccccc
Q psy2983 86 PIIVQPTQAEK 96 (370)
Q Consensus 86 ~l~v~~~~~~~ 96 (370)
+|.|.++....
T Consensus 78 ~l~v~~a~~~~ 88 (97)
T 1x5p_A 78 QLKVNIARKQP 88 (97)
T ss_dssp EEEEECCSSCC
T ss_pred EEEEEECCCCC
Confidence 99999987653
No 333
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=6.8e-15 Score=113.12 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=71.8
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEE-EEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEE
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDV-RLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPII 88 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v-~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~ 88 (370)
+.....++|||+|||..+++++|+++|+.||.|.++ .++.++.++ .|||+|.+.++|..|++ ++|..+.|++|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 344567999999999999999999999999999999 488776543 39999999999999996 999999999999
Q ss_pred Eeccccc
Q psy2983 89 VQPTQAE 95 (370)
Q Consensus 89 v~~~~~~ 95 (370)
|.++.+.
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 9988754
No 334
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=114.73 Aligned_cols=77 Identities=22% Similarity=0.389 Sum_probs=68.9
Q ss_pred CCceEEE--ecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCcee-----CCee
Q psy2983 113 GPMRLYI--GSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL-----AGRP 185 (370)
Q Consensus 113 ~~~~l~V--~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i-----~g~~ 185 (370)
+.++||| +||++.+++++|+++|++||.|..+.+.. .+|||||+|.+.++|.+|++.|||.++ .|++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4578999 77999999999999999999999988753 278999999999999999999999998 6899
Q ss_pred EEEEEeecCC
Q psy2983 186 MKVGTVTDRN 195 (370)
Q Consensus 186 l~V~~~~~~~ 195 (370)
|.|.++....
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999986543
No 335
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.54 E-value=6.5e-15 Score=111.80 Aligned_cols=79 Identities=19% Similarity=0.405 Sum_probs=62.1
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEe
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQ 90 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~ 90 (370)
....+..+|||+|||.++|+++|+++|++||+|.++.++++ ++|||||+|.+.++|.++... ...+.|+.|.|.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~ 79 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGE-DLIIKGISVHIS 79 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEE
Confidence 34567799999999999999999999999999999999874 689999999999999843321 234569999998
Q ss_pred ccccc
Q psy2983 91 PTQAE 95 (370)
Q Consensus 91 ~~~~~ 95 (370)
++.+.
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 87654
No 336
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.53 E-value=5.8e-15 Score=111.74 Aligned_cols=76 Identities=16% Similarity=0.255 Sum_probs=69.4
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
.+..++|||+|||..+++++|+++|++| .|.++.+. +++|||||+|.+.++|.+|++ ++|..+.|++|+|.+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 3567999999999999999999999999 99999884 568999999999999999996 999999999999998
Q ss_pred cccc
Q psy2983 92 TQAE 95 (370)
Q Consensus 92 ~~~~ 95 (370)
+...
T Consensus 75 a~~~ 78 (88)
T 1wg1_A 75 QPTD 78 (88)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7543
No 337
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.53 E-value=2.9e-14 Score=108.21 Aligned_cols=76 Identities=16% Similarity=0.396 Sum_probs=62.8
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCce--eCCeeEEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE--LAGRPMKVG 189 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~--i~g~~l~V~ 189 (370)
..+.+|||+|||+++++++|+++|++||.|.+++++.+ ++|||||+|.+.++|.+ +++.. +.|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 44579999999999999999999999999999999864 69999999999999983 56655 459999999
Q ss_pred EeecCCC
Q psy2983 190 TVTDRNE 196 (370)
Q Consensus 190 ~~~~~~~ 196 (370)
++.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9876543
No 338
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.53 E-value=1.8e-15 Score=125.38 Aligned_cols=84 Identities=24% Similarity=0.397 Sum_probs=71.9
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEE-----eeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCee
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRL-----ITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIP 86 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i-----~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~ 86 (370)
..++++|||+|||..+|+++|+++|+.||.|..+.+ ++...+++++|||||+|.+.++|.+|++ ++|..+.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 457799999999999999999999999999876410 1112357889999999999999999997 9999999999
Q ss_pred EEEecccccc
Q psy2983 87 IIVQPTQAEK 96 (370)
Q Consensus 87 l~v~~~~~~~ 96 (370)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999987543
No 339
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.52 E-value=1.1e-14 Score=126.82 Aligned_cols=81 Identities=17% Similarity=0.314 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEeccc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~~ 93 (370)
...++|||+|||.++|+++|+++|++||+|.+|++.++.. ++++|||||+|.+.++|.+|++..+..+.|++|.|.+..
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 4569999999999999999999999999999999998864 889999999999999999999877779999999999876
Q ss_pred cc
Q psy2983 94 AE 95 (370)
Q Consensus 94 ~~ 95 (370)
..
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 54
No 340
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4e-14 Score=112.52 Aligned_cols=76 Identities=21% Similarity=0.402 Sum_probs=65.5
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCC---CCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT---GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V 188 (370)
...++|||+|||+.+++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.|+ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3457899999999999999999999999999 888887766 7999999999999999999999883 356666655
Q ss_pred EE
Q psy2983 189 GT 190 (370)
Q Consensus 189 ~~ 190 (370)
..
T Consensus 83 ~~ 84 (114)
T 2dnl_A 83 VS 84 (114)
T ss_dssp EC
T ss_pred cc
Confidence 43
No 341
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.7e-14 Score=107.50 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=66.1
Q ss_pred cCCCCe-EEEcCCCCCCcHHH----HHHHhhcC-CCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCe
Q psy2983 13 ERDART-IFCMQLSQRIRTRD----LEEFFSSV-GKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGI 85 (370)
Q Consensus 13 ~~~~r~-v~V~nLp~~~te~~----L~~~f~~~-G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~ 85 (370)
..++.| |||+|||.++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|.+|++ |+|..+.|+
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 345667 99999999999988 55899999 599998 23 999999999999999995 999999999
Q ss_pred eEEEecccccccc
Q psy2983 86 PIIVQPTQAEKNR 98 (370)
Q Consensus 86 ~l~v~~~~~~~~~ 98 (370)
+|+|++++.....
T Consensus 75 ~i~v~~A~~~sd~ 87 (96)
T 2diu_A 75 RIIVSFTPKNREL 87 (96)
T ss_dssp CCEEESSCCSCCC
T ss_pred eEEEEecCCCcce
Confidence 9999999866543
No 342
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=8.6e-15 Score=110.73 Aligned_cols=77 Identities=22% Similarity=0.403 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEEEeccc
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQ 93 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~v~~~~ 93 (370)
..+++|||+|||.++++++|+++|++||+|.++.++++ ++|||||+|.+.++|++|+.. +..+.|++|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 46799999999999999999999999999999998764 589999999999999876543 455689999999887
Q ss_pred ccc
Q psy2983 94 AEK 96 (370)
Q Consensus 94 ~~~ 96 (370)
+..
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 343
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.51 E-value=8.3e-14 Score=108.93 Aligned_cols=81 Identities=20% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCceEEEecCCC-----CCCHHHHHhcccCCCceeeEEEeecCCC-CCcccEEEEEECCHHHHHHHHHHhCCceeCCeeE
Q psy2983 113 GPMRLYIGSLHF-----NITEDMLRGIFEPFGKIDNIQLMVDPDT-GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186 (370)
Q Consensus 113 ~~~~l~V~nlp~-----~~t~e~l~~~f~~~G~i~~v~~~~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l 186 (370)
++++|+|.|+.. +-++++|++.|++||.|.++.++.++.+ +.++|+|||+|.+.++|.+|+..|||..+.||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 457899999963 2378999999999999999999988654 6899999999999999999999999999999999
Q ss_pred EEEEeec
Q psy2983 187 KVGTVTD 193 (370)
Q Consensus 187 ~V~~~~~ 193 (370)
+|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999754
No 344
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.2e-14 Score=114.71 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=68.5
Q ss_pred cccCCCCeEEE--cCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCcc-----
Q psy2983 11 PEERDARTIFC--MQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKL----- 82 (370)
Q Consensus 11 ~~~~~~r~v~V--~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i----- 82 (370)
....++++||| +|||.++++++|+++|++||.|.+|.+.. .+|||||+|.+.++|.+|++ |||..+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34457899999 77999999999999999999999998753 27899999999999999996 999988
Q ss_pred CCeeEEEecccc
Q psy2983 83 LGIPIIVQPTQA 94 (370)
Q Consensus 83 ~g~~l~v~~~~~ 94 (370)
.|++|+|.+...
T Consensus 94 ~g~~l~v~~a~~ 105 (114)
T 2cq2_A 94 QKITLYLNFVEK 105 (114)
T ss_dssp CEEECEEEEESC
T ss_pred CCcEEEEEeccc
Confidence 688999987754
No 345
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.50 E-value=3.2e-14 Score=107.17 Aligned_cols=71 Identities=30% Similarity=0.641 Sum_probs=65.9
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCC----C-------ceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCcee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPF----G-------KIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~----G-------~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i 181 (370)
..++|||+|||+.+++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .|||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 35799999999999999999999999 8 8999988754 799999999999999999 8999999
Q ss_pred CCeeEEEEE
Q psy2983 182 AGRPMKVGT 190 (370)
Q Consensus 182 ~g~~l~V~~ 190 (370)
.|+.|+|++
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999975
No 346
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.50 E-value=3.3e-14 Score=138.77 Aligned_cols=83 Identities=17% Similarity=0.386 Sum_probs=78.0
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~~ 91 (370)
..+.++|||+|||..+|+++|.++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||+ |+|..|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4556899999999999999999999999999999999999999999999999999999999995 999999999999998
Q ss_pred cccc
Q psy2983 92 TQAE 95 (370)
Q Consensus 92 ~~~~ 95 (370)
+...
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 8754
No 347
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.50 E-value=2.6e-14 Score=113.89 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=66.0
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCee-----EE
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRP-----MK 187 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~-----l~ 187 (370)
...+|||+|||+.+++++|+++|++||.|..+.++.+ |||||+|.+.++|.+|++.|||..|.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3578999999999999999999999999999999754 89999999999999999999999999998 66
Q ss_pred EEEeecC
Q psy2983 188 VGTVTDR 194 (370)
Q Consensus 188 V~~~~~~ 194 (370)
|....++
T Consensus 88 v~~~~~~ 94 (115)
T 3beg_B 88 VKVDGPR 94 (115)
T ss_dssp EEECC--
T ss_pred eccCCCC
Confidence 6665543
No 348
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.49 E-value=1.2e-14 Score=115.79 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=64.3
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCee----
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIP---- 86 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~---- 86 (370)
..+..++|||+|||.++++++|+++|++||+|..+.++.+ |||||+|.+.++|.+|++ |+|..|.|+.
T Consensus 12 ~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 12 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp -----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 3467799999999999999999999999999999999764 899999999999999996 9999999998
Q ss_pred -EEEecccc
Q psy2983 87 -IIVQPTQA 94 (370)
Q Consensus 87 -l~v~~~~~ 94 (370)
+.|.....
T Consensus 85 ~i~v~~~~~ 93 (115)
T 3beg_B 85 YIRVKVDGP 93 (115)
T ss_dssp BCEEEECC-
T ss_pred EEEeccCCC
Confidence 55555443
No 349
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.1e-14 Score=106.95 Aligned_cols=78 Identities=19% Similarity=0.420 Sum_probs=66.2
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
..++|||+|||+.+++++|+++|++||.|..++++.+ ++|||||+|.+.++|.+|.. .+..+.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 4579999999999999999999999999999999755 68999999999999976432 1345589999999987
Q ss_pred cCCCC
Q psy2983 193 DRNES 197 (370)
Q Consensus 193 ~~~~~ 197 (370)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76554
No 350
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.48 E-value=5.4e-14 Score=113.60 Aligned_cols=77 Identities=22% Similarity=0.290 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecE-EEEEecCCCChHHHhh-ccCCccCC--eeEEE
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGI-AYIEFKDPESVPLAMG-LNGQKLLG--IPIIV 89 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~-afVeF~~~e~A~~Al~-l~g~~i~g--~~l~v 89 (370)
..-.+|||+||++.+|+++|+++|++||.|.+|.+..+. +|+ |||+|.+.++|.+|++ |+|..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 344567899999999999999999999999999887643 577 9999999999999996 99999998 89999
Q ss_pred eccccc
Q psy2983 90 QPTQAE 95 (370)
Q Consensus 90 ~~~~~~ 95 (370)
++++..
T Consensus 101 ~~ak~~ 106 (130)
T 3zzy_A 101 DFSKLT 106 (130)
T ss_dssp EECSCS
T ss_pred EecCCC
Confidence 998754
No 351
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.48 E-value=7.3e-14 Score=109.27 Aligned_cols=84 Identities=17% Similarity=0.122 Sum_probs=73.6
Q ss_pred cCCCCeEEEcCCCC-----CCcHHHHHHHhhcCCCeeEEEEeeeCCC-CCeecEEEEEecCCCChHHHhh-ccCCccCCe
Q psy2983 13 ERDARTIFCMQLSQ-----RIRTRDLEEFFSSVGKVRDVRLITCNKT-RRFKGIAYIEFKDPESVPLAMG-LNGQKLLGI 85 (370)
Q Consensus 13 ~~~~r~v~V~nLp~-----~~te~~L~~~f~~~G~v~~v~i~~d~~~-~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~ 85 (370)
..++++|+|+||.. +-++++|++.|++||.|.++.+++++.+ ++++|||||+|.+.++|.+|++ |||..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35789999999963 2378999999999999999999998754 6889999999999999999995 999999999
Q ss_pred eEEEecccccc
Q psy2983 86 PIIVQPTQAEK 96 (370)
Q Consensus 86 ~l~v~~~~~~~ 96 (370)
.|.|.++....
T Consensus 85 ~i~v~~a~~~~ 95 (105)
T 2pe8_A 85 VVKACFYNLDK 95 (105)
T ss_dssp ECEEEECCHHH
T ss_pred EEEEEEcCHHH
Confidence 99999887543
No 352
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.48 E-value=6.5e-14 Score=117.40 Aligned_cols=78 Identities=21% Similarity=0.231 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCC--eeEEEe
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLG--IPIIVQ 90 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g--~~l~v~ 90 (370)
....+|||+|||..+|+++|+++|++||.|.+|.+..+ .++|||||+|.+.++|..|++ |+|..|.| ++|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34466899999999999999999999999999998653 247899999999999999996 99999965 999999
Q ss_pred ccccc
Q psy2983 91 PTQAE 95 (370)
Q Consensus 91 ~~~~~ 95 (370)
+++..
T Consensus 120 ~Ak~~ 124 (164)
T 1sjr_A 120 FSKLT 124 (164)
T ss_dssp ECSSS
T ss_pred EecCC
Confidence 98764
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=1.2e-13 Score=110.91 Aligned_cols=77 Identities=26% Similarity=0.491 Sum_probs=69.9
Q ss_pred CCCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEe
Q psy2983 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~ 191 (370)
...++|||+|+ ++++++|+++|++||.|..+.+. .++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45689999995 69999999999999999999985 45899999999999999999999999999999999998
Q ss_pred ecCCC
Q psy2983 192 TDRNE 196 (370)
Q Consensus 192 ~~~~~ 196 (370)
.++..
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 77643
No 354
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.46 E-value=1.7e-13 Score=119.23 Aligned_cols=78 Identities=26% Similarity=0.262 Sum_probs=72.0
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeec
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~ 193 (370)
.++|||+|||+.+++++|+++|++||.|..+++.++. +|.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.+..+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4789999999999999999999999999999999986 6999999999999999999999855 5699999999998654
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.44 E-value=8.7e-14 Score=111.81 Aligned_cols=76 Identities=20% Similarity=0.345 Sum_probs=68.6
Q ss_pred ccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeEEEe
Q psy2983 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQ 90 (370)
Q Consensus 12 ~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l~v~ 90 (370)
...+.++|||+|| ++++++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|++ ++|..+.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3457899999996 69999999999999999999885 458999999999999999995 99999999999999
Q ss_pred ccccc
Q psy2983 91 PTQAE 95 (370)
Q Consensus 91 ~~~~~ 95 (370)
++...
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 98754
No 356
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=3.3e-13 Score=108.40 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=66.1
Q ss_pred CCCe--EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecE-EEEEecCCCChHHHhh-ccCCccCC--eeEE
Q psy2983 15 DART--IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGI-AYIEFKDPESVPLAMG-LNGQKLLG--IPII 88 (370)
Q Consensus 15 ~~r~--v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~-afVeF~~~e~A~~Al~-l~g~~i~g--~~l~ 88 (370)
++++ |||+|||..+|+++|+++|++||.|.+|++.. + .|| |||+|.+.++|..|++ |+|..|.| ++|+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 3444 67999999999999999999999999999865 2 275 9999999999999996 99999988 6899
Q ss_pred Eecccccc
Q psy2983 89 VQPTQAEK 96 (370)
Q Consensus 89 v~~~~~~~ 96 (370)
|.+++...
T Consensus 96 V~~Ak~~~ 103 (124)
T 2e5i_A 96 IEYARPTR 103 (124)
T ss_dssp EECCSCSC
T ss_pred EEEecCCc
Confidence 99887543
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.41 E-value=2.6e-13 Score=121.18 Aligned_cols=80 Identities=25% Similarity=0.438 Sum_probs=70.2
Q ss_pred CCCceEEEecCCCCC---------CHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCcee-
Q psy2983 112 GGPMRLYIGSLHFNI---------TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL- 181 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~---------t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i- 181 (370)
...++|||+|||..+ ++++|+++|++||.|.+|+++.+ +|||||+|.+.++|..|++.|+|..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 356899999999998 79999999999999999999853 89999999999999999999999999
Q ss_pred -----------CCeeEEEEEeecCCCC
Q psy2983 182 -----------AGRPMKVGTVTDRNES 197 (370)
Q Consensus 182 -----------~g~~l~V~~~~~~~~~ 197 (370)
.|+.|.|.|+.+...+
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC-----
T ss_pred ccccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876543
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.39 E-value=9e-13 Score=103.03 Aligned_cols=81 Identities=20% Similarity=0.212 Sum_probs=70.2
Q ss_pred CCceEEEecC--CCCCC--------HHHHHhcccCCCceeeEEEeecCCC--CCcccEEEEEECCHHHHHHHHHHhCCce
Q psy2983 113 GPMRLYIGSL--HFNIT--------EDMLRGIFEPFGKIDNIQLMVDPDT--GRSKGYGFITFHSADDAKKAQEQLNGFE 180 (370)
Q Consensus 113 ~~~~l~V~nl--p~~~t--------~e~l~~~f~~~G~i~~v~~~~~~~~--g~~~g~afV~f~~~~~a~~A~~~l~g~~ 180 (370)
+++.|.+.|+ |..+. +++|++.|++||.|.++.++++..+ +.++|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4578999998 33443 3799999999999999999988654 3689999999999999999999999999
Q ss_pred eCCeeEEEEEeec
Q psy2983 181 LAGRPMKVGTVTD 193 (370)
Q Consensus 181 i~g~~l~V~~~~~ 193 (370)
+.||.|+|.+...
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998654
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.39 E-value=2.8e-13 Score=121.00 Aligned_cols=81 Identities=16% Similarity=0.345 Sum_probs=70.2
Q ss_pred cccCCCCeEEEcCCCCCC---------cHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCC
Q psy2983 11 PEERDARTIFCMQLSQRI---------RTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQ 80 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~---------te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~ 80 (370)
...+..++|||+|||..+ ++++|+++|++||+|.+|+++. ++|||||+|.+.++|+.|++ |+|.
T Consensus 129 s~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 129 SFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp --CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 345688999999999998 7999999999999999999985 37999999999999999995 9999
Q ss_pred cc------------CCeeEEEeccccccc
Q psy2983 81 KL------------LGIPIIVQPTQAEKN 97 (370)
Q Consensus 81 ~i------------~g~~l~v~~~~~~~~ 97 (370)
.+ .|+.|.|.++....+
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEeccccccccccCCCCEEEEEEccCCCC
Confidence 99 899999999986544
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=4.7e-12 Score=100.16 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=70.5
Q ss_pred CCCCceEEEecCCCCCC-----------HHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCc
Q psy2983 111 TGGPMRLYIGSLHFNIT-----------EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGF 179 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~~t-----------~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 179 (370)
+.+.++|+|.||..... +++|+++|++||.|..+.+ .++ .++|||||+|.+.++|.+|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34568899999954432 5899999999999999965 443 37999999999999999999999999
Q ss_pred eeCCeeEEEEEeecCCCC
Q psy2983 180 ELAGRPMKVGTVTDRNES 197 (370)
Q Consensus 180 ~i~g~~l~V~~~~~~~~~ 197 (370)
.+.|++|+|.++.++...
T Consensus 88 ~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp EETTEECEEEECCSCCCS
T ss_pred EECCcEEEEEEeCCCCCc
Confidence 999999999998776543
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.34 E-value=3.8e-13 Score=105.03 Aligned_cols=72 Identities=18% Similarity=0.365 Sum_probs=64.0
Q ss_pred EecCCCCCCHHHHHhcc------------cCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeE
Q psy2983 119 IGSLHFNITEDMLRGIF------------EPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186 (370)
Q Consensus 119 V~nlp~~~t~e~l~~~f------------~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l 186 (370)
+.|||..+++++|++.| ++||.|.++.+.++. +|.++|||||+|.+.++|.+|+..|||..+.||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777887777666 999999999999886 58999999999999999999999999999999999
Q ss_pred EEEEe
Q psy2983 187 KVGTV 191 (370)
Q Consensus 187 ~V~~~ 191 (370)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 362
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.8e-12 Score=101.41 Aligned_cols=81 Identities=23% Similarity=0.364 Sum_probs=68.9
Q ss_pred cccCCCCeEEEcCCCCCCc-----------HHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-cc
Q psy2983 11 PEERDARTIFCMQLSQRIR-----------TRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LN 78 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~t-----------e~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~ 78 (370)
....++++|+|+||....+ +++|+++|++||.|.+|.+ .++ .++|||||+|.+.++|.+|++ |+
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3556899999999954332 6899999999999999965 544 368999999999999999995 99
Q ss_pred CCccCCeeEEEeccccc
Q psy2983 79 GQKLLGIPIIVQPTQAE 95 (370)
Q Consensus 79 g~~i~g~~l~v~~~~~~ 95 (370)
|..+.|++|.|.++...
T Consensus 86 g~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGT 102 (112)
T ss_dssp TCEETTEECEEEECCSC
T ss_pred CCEECCcEEEEEEeCCC
Confidence 99999999999997654
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.32 E-value=4.6e-12 Score=101.02 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=69.7
Q ss_pred CceEEEecCCC--CC---CHHHHHhcccCCCceeeEEEeecCC----CCCcccEEEEEECCHHHHHHHHHHhCCceeCCe
Q psy2983 114 PMRLYIGSLHF--NI---TEDMLRGIFEPFGKIDNIQLMVDPD----TGRSKGYGFITFHSADDAKKAQEQLNGFELAGR 184 (370)
Q Consensus 114 ~~~l~V~nlp~--~~---t~e~l~~~f~~~G~i~~v~~~~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~ 184 (370)
+++|++.|+-. ++ .+++|++.|++||.|.++.++.+.. ++.++|++||+|.+.++|.+|+..|||..+.||
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 46899999842 22 3689999999999999999998864 457889999999999999999999999999999
Q ss_pred eEEEEEeec
Q psy2983 185 PMKVGTVTD 193 (370)
Q Consensus 185 ~l~V~~~~~ 193 (370)
.|+|.+...
T Consensus 100 ~i~v~~~~~ 108 (118)
T 3ue2_A 100 KVVAEVYDQ 108 (118)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEcCh
Confidence 999998643
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.30 E-value=1.5e-12 Score=101.71 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=71.0
Q ss_pred CCCCeEEEcCC--CCCCc--------HHHHHHHhhcCCCeeEEEEeeeCCC--CCeecEEEEEecCCCChHHHhh-ccCC
Q psy2983 14 RDARTIFCMQL--SQRIR--------TRDLEEFFSSVGKVRDVRLITCNKT--RRFKGIAYIEFKDPESVPLAMG-LNGQ 80 (370)
Q Consensus 14 ~~~r~v~V~nL--p~~~t--------e~~L~~~f~~~G~v~~v~i~~d~~~--~~~kg~afVeF~~~e~A~~Al~-l~g~ 80 (370)
.+++.|.+.|+ |..+. +++|++.|++||+|.+|.|++++.+ ++++|+|||+|.+.++|.+|++ |||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47899999999 44443 4799999999999999999988765 3679999999999999999995 9999
Q ss_pred ccCCeeEEEeccccc
Q psy2983 81 KLLGIPIIVQPTQAE 95 (370)
Q Consensus 81 ~i~g~~l~v~~~~~~ 95 (370)
.+.|++|.+.+....
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999887643
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.29 E-value=4e-12 Score=101.34 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCC--CC---cHHHHHHHhhcCCCeeEEEEeeeCC----CCCeecEEEEEecCCCChHHHhh-ccCCccC
Q psy2983 14 RDARTIFCMQLSQ--RI---RTRDLEEFFSSVGKVRDVRLITCNK----TRRFKGIAYIEFKDPESVPLAMG-LNGQKLL 83 (370)
Q Consensus 14 ~~~r~v~V~nLp~--~~---te~~L~~~f~~~G~v~~v~i~~d~~----~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~ 83 (370)
.++++|+++|+-. ++ -++||++.|++||+|.+|.|++++. +++++|+|||+|.+.++|.+|++ |||..+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3789999999942 22 3799999999999999999999865 46788999999999999999995 9999999
Q ss_pred CeeEEEeccccc
Q psy2983 84 GIPIIVQPTQAE 95 (370)
Q Consensus 84 g~~l~v~~~~~~ 95 (370)
|+.|.+.+....
T Consensus 98 GR~i~v~~~~~~ 109 (118)
T 3ue2_A 98 GRKVVAEVYDQE 109 (118)
T ss_dssp TEECEEEEECHH
T ss_pred CcEEEEEEcChH
Confidence 999999887643
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.25 E-value=1.2e-12 Score=102.23 Aligned_cols=71 Identities=20% Similarity=0.347 Sum_probs=61.3
Q ss_pred EcCCCCCCcHHHHHHHh------------hcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccCCeeE
Q psy2983 21 CMQLSQRIRTRDLEEFF------------SSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPI 87 (370)
Q Consensus 21 V~nLp~~~te~~L~~~f------------~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g~~l 87 (370)
+.|||..+++++|++.| ++||+|.++.++++.. ++++|||||+|.+.++|.+|++ |+|..+.|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666677777777666 9999999999998764 7899999999999999999995 99999999999
Q ss_pred EEecc
Q psy2983 88 IVQPT 92 (370)
Q Consensus 88 ~v~~~ 92 (370)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.2e-10 Score=89.89 Aligned_cols=66 Identities=20% Similarity=0.392 Sum_probs=58.1
Q ss_pred CCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEeecCCC
Q psy2983 124 FNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196 (370)
Q Consensus 124 ~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~~~~~ 196 (370)
..+++++|+++|++||.|..+.++ +.++|||||+|.+.++|..|+..+++ +.|++|+|.++.++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 568999999999999999999987 46799999999999999999997544 6799999999876644
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.19 E-value=2.2e-11 Score=96.41 Aligned_cols=46 Identities=61% Similarity=1.039 Sum_probs=42.6
Q ss_pred CCCCCceEEeecCCCCCCCCCchhhHHhHHHHHHHHhhcCceeeEE
Q psy2983 266 PPIATQCFLLANMFDPATETNPTWDVEIRDDVIEECNKHGVGASTV 311 (370)
Q Consensus 266 ~~~ps~vl~L~Nm~~~~~l~~d~~~~ei~eDv~~Ec~kyG~~~~~~ 311 (370)
++.||+||+|.|||+++++.|+++|+||++||++||+|||.+..+.
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~ 48 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIY 48 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEE
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEE
Confidence 5678999999999999999999999999999999999999986644
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.1e-10 Score=90.17 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=63.5
Q ss_pred CCCeEEEcCCC-------CCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeE
Q psy2983 15 DARTIFCMQLS-------QRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPI 87 (370)
Q Consensus 15 ~~r~v~V~nLp-------~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l 87 (370)
..++|.|.-.+ ..+++++|+++|++||.|.+|.++ ++++|||||+|.+.++|..|++. +..+.|++|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l 82 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPL 82 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBC
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeE
Confidence 36778887665 458999999999999999999987 36789999999999999999963 344679999
Q ss_pred EEecccccc
Q psy2983 88 IVQPTQAEK 96 (370)
Q Consensus 88 ~v~~~~~~~ 96 (370)
.|.++....
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999976543
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.15 E-value=1.7e-10 Score=91.19 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=64.6
Q ss_pred CCceEEEecCCCCC----------CHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeC
Q psy2983 113 GPMRLYIGSLHFNI----------TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA 182 (370)
Q Consensus 113 ~~~~l~V~nlp~~~----------t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~ 182 (370)
+++.|.+.|+=..- .+++|++.|++||.|.++.+.++. ++|+|||+|.+.++|.+|+..|||..+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45688898873221 136899999999999999986552 5899999999999999999999999999
Q ss_pred CeeEEEEEee
Q psy2983 183 GRPMKVGTVT 192 (370)
Q Consensus 183 g~~l~V~~~~ 192 (370)
||.|+|.++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999964
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.15 E-value=6.2e-11 Score=111.35 Aligned_cols=75 Identities=23% Similarity=0.420 Sum_probs=64.3
Q ss_pred CCCCceEEEec--CCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeC---Ce-
Q psy2983 111 TGGPMRLYIGS--LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA---GR- 184 (370)
Q Consensus 111 ~~~~~~l~V~n--lp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~---g~- 184 (370)
..+..+|||+| |+..+++++|+++|++||.|.+|.+.. +||||||+|.+.++|.+|++.|||.++. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34557999999 578999999999999999999987742 4799999999999999999999999883 44
Q ss_pred -eEEEEEe
Q psy2983 185 -PMKVGTV 191 (370)
Q Consensus 185 -~l~V~~~ 191 (370)
.+.+.++
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 5777776
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.13 E-value=4.1e-11 Score=112.54 Aligned_cols=80 Identities=14% Similarity=0.262 Sum_probs=66.9
Q ss_pred CCCcccCCCCeEEEcC--CCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh-ccCCccC-
Q psy2983 8 DLSPEERDARTIFCMQ--LSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLL- 83 (370)
Q Consensus 8 ~~~~~~~~~r~v~V~n--Lp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~i~- 83 (370)
.+.-...++++|||+| |+..+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|.+|++ |||..+.
T Consensus 10 ~v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 83 (345)
T 3tht_A 10 GIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVD 83 (345)
T ss_dssp TCCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccc
Confidence 3445567899999999 578999999999999999999987743 47999999999999999996 9999873
Q ss_pred --Ce--eEEEeccc
Q psy2983 84 --GI--PIIVQPTQ 93 (370)
Q Consensus 84 --g~--~l~v~~~~ 93 (370)
|+ .+++.+..
T Consensus 84 ~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 84 DLGQKITLYLNFVE 97 (345)
T ss_dssp TTSCEEECEEEECS
T ss_pred ccCCceEEEEEEee
Confidence 44 56676654
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=6.4e-09 Score=77.46 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=61.9
Q ss_pred CceEEEecCC----CCCCH----HHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCee
Q psy2983 114 PMRLYIGSLH----FNITE----DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRP 185 (370)
Q Consensus 114 ~~~l~V~nlp----~~~t~----e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 185 (370)
..+|+|...| ..+-+ .+|.+.|++||.|..+++..+. +||+|.+.++|.+|++ |||..+.||.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 3578888776 23333 6899999999999999998763 8999999999999999 9999999999
Q ss_pred EEEEEeecCC
Q psy2983 186 MKVGTVTDRN 195 (370)
Q Consensus 186 l~V~~~~~~~ 195 (370)
|+|+.+.+.-
T Consensus 78 LkV~lkt~dW 87 (91)
T 2dnr_A 78 ITIALKSPSG 87 (91)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeCCCCc
Confidence 9999987643
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=5.5e-09 Score=82.86 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=66.1
Q ss_pred CCCCceEEEecCCCC-CCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECC-HHHHHHHHHHhC--CceeCCeeE
Q psy2983 111 TGGPMRLYIGSLHFN-ITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHS-ADDAKKAQEQLN--GFELAGRPM 186 (370)
Q Consensus 111 ~~~~~~l~V~nlp~~-~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~-~~~a~~A~~~l~--g~~i~g~~l 186 (370)
......|||+||++. ++.++|+++|++||.|..|.+..+.. .|||+|.+ .++|..|+..|+ +..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 345678999999999 99999999999999999999987753 59999999 899999999995 788899888
Q ss_pred EEEEe
Q psy2983 187 KVGTV 191 (370)
Q Consensus 187 ~V~~~ 191 (370)
++...
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88764
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=8e-09 Score=76.94 Aligned_cols=73 Identities=22% Similarity=0.330 Sum_probs=61.8
Q ss_pred CCCeEEEcCCCC----CCcH----HHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCee
Q psy2983 15 DARTIFCMQLSQ----RIRT----RDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIP 86 (370)
Q Consensus 15 ~~r~v~V~nLp~----~~te----~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~ 86 (370)
+.-||+|.-.|. ++-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|++|+|..+.|+.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 446788887762 3333 6789999999999999998864 89999999999999999999999999
Q ss_pred EEEeccccc
Q psy2983 87 IIVQPTQAE 95 (370)
Q Consensus 87 l~v~~~~~~ 95 (370)
|+|+...+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999887643
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=1.4e-08 Score=80.45 Aligned_cols=74 Identities=14% Similarity=0.097 Sum_probs=64.0
Q ss_pred CCCCeEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecC-CCChHHHhh-c--cCCccCCeeEE
Q psy2983 14 RDARTIFCMQLSQR-IRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD-PESVPLAMG-L--NGQKLLGIPII 88 (370)
Q Consensus 14 ~~~r~v~V~nLp~~-~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~-~e~A~~Al~-l--~g~~i~g~~l~ 88 (370)
.....|||+||+.. ++.++|+++|++||+|..|.+.++.. .|||+|.+ .++|..|+. + .+..|.|..+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 46788999999999 99999999999999999999988653 49999999 688998885 6 57889998888
Q ss_pred Eeccc
Q psy2983 89 VQPTQ 93 (370)
Q Consensus 89 v~~~~ 93 (370)
+....
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 86544
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.67 E-value=3.1e-08 Score=87.65 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=60.3
Q ss_pred CCHHHHHhcccCCCceeeEEEeecCC----CCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEEee
Q psy2983 126 ITEDMLRGIFEPFGKIDNIQLMVDPD----TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192 (370)
Q Consensus 126 ~t~e~l~~~f~~~G~i~~v~~~~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~V~~~~ 192 (370)
-.+++|++.|++||.|.++.+..+.. ++.++|++||+|.+.++|.+|+..|||..+.||.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 45689999999999999999986543 45899999999999999999999999999999999999854
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=3.3e-08 Score=73.99 Aligned_cols=72 Identities=18% Similarity=0.205 Sum_probs=61.5
Q ss_pred CCCCeEEEcCCCCC-----CcH----HHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCC
Q psy2983 14 RDARTIFCMQLSQR-----IRT----RDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLG 84 (370)
Q Consensus 14 ~~~r~v~V~nLp~~-----~te----~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g 84 (370)
++.-||+|.-++.. +-. .+|.+.|..||.|..++++.|+ +||+|.+.++|.+|++|+|..+.|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 35578999988743 222 5688999999999999998864 999999999999999999999999
Q ss_pred eeEEEeccc
Q psy2983 85 IPIIVQPTQ 93 (370)
Q Consensus 85 ~~l~v~~~~ 93 (370)
+.|+|+...
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999998754
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=3.8e-08 Score=73.63 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=60.0
Q ss_pred CCceEEEecCCCC-----CCH----HHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCC
Q psy2983 113 GPMRLYIGSLHFN-----ITE----DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG 183 (370)
Q Consensus 113 ~~~~l~V~nlp~~-----~t~----e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g 183 (370)
+..+|+|..++.. +-+ .+|.+.|.+||.|..+++..|. +||+|.+.++|.+|+. |||..+.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 3468999988743 322 5799999999999999998763 9999999999999999 99999999
Q ss_pred eeEEEEEe
Q psy2983 184 RPMKVGTV 191 (370)
Q Consensus 184 ~~l~V~~~ 191 (370)
|.|+|+..
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 99999874
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.55 E-value=2.2e-07 Score=70.88 Aligned_cols=72 Identities=21% Similarity=0.250 Sum_probs=66.4
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCC-----CceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPF-----GKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~-----G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 187 (370)
..++|-+-|||..+++..|+.+++++ |.+.++.+..| -|-|+|+|.+...|-+|.-.|+|.+|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35789999999999999999999999 99999999877 45699999999999999999999999999999
Q ss_pred EEE
Q psy2983 188 VGT 190 (370)
Q Consensus 188 V~~ 190 (370)
+.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 964
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.53 E-value=1.8e-07 Score=82.69 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCC-----CCCcHHHHHHHhhcCCCeeEEEEeeeCCC----CCeecEEEEEecCCCChHHHhh-ccCCccC
Q psy2983 14 RDARTIFCMQLS-----QRIRTRDLEEFFSSVGKVRDVRLITCNKT----RRFKGIAYIEFKDPESVPLAMG-LNGQKLL 83 (370)
Q Consensus 14 ~~~r~v~V~nLp-----~~~te~~L~~~f~~~G~v~~v~i~~d~~~----~~~kg~afVeF~~~e~A~~Al~-l~g~~i~ 83 (370)
..++.+.+.|+- ..-.+++|++.|++||.|.++.+.++..+ ++++|++||+|.+.++|.+|++ |+|..+.
T Consensus 122 ~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~ 201 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 201 (222)
T ss_dssp CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred cccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC
Confidence 344556666653 22457899999999999999999866543 4899999999999999999996 9999999
Q ss_pred CeeEEEeccccc
Q psy2983 84 GIPIIVQPTQAE 95 (370)
Q Consensus 84 g~~l~v~~~~~~ 95 (370)
||.|.+.+....
T Consensus 202 gr~i~~~~~~~~ 213 (222)
T 3dxb_A 202 GRKVVAEVYDQE 213 (222)
T ss_dssp SSBCEEEECCHH
T ss_pred CeEEEEEEcCHH
Confidence 999999887643
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.1e-06 Score=67.01 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=65.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcC-----CCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh-hccCCccCCeeEE
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSV-----GKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGIPII 88 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~-----G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~i~g~~l~ 88 (370)
..|+|-+-|||..++...|+.+++++ |.+..+.+..|. +-|+|+|.+...|-+|. +|+|..|.|+.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47999999999999999999999999 999999998875 45999999999999988 7999999999999
Q ss_pred Eecc
Q psy2983 89 VQPT 92 (370)
Q Consensus 89 v~~~ 92 (370)
+.-.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 8543
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=1.1e-05 Score=61.04 Aligned_cols=89 Identities=16% Similarity=0.265 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhc-----CCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCCeeEE
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSS-----VGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPII 88 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~-----~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g~~l~ 88 (370)
...++|.|.|||+.+.++.|.-+|+. -|+|.++.... +-|+|+|.+.+.|++.|+.....++|.+|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 35688999999999999999999997 26899987643 459999999999999999888999999999
Q ss_pred EecccccccccCCCCCCCCCCCCCCCceEEEecCCCCCC
Q psy2983 89 VQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127 (370)
Q Consensus 89 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t 127 (370)
|.+... ..+.+|++.+||+.++
T Consensus 78 V~P~~~-----------------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPP-----------------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCC-----------------CCCCCCCCCSCCCCCC
T ss_pred EEcCCC-----------------CCcceEeeecCCCCCC
Confidence 976432 2245788999988765
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.66 E-value=0.00012 Score=55.61 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=64.3
Q ss_pred CCCceEEEecCCCCC-C----HHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeE
Q psy2983 112 GGPMRLYIGSLHFNI-T----EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186 (370)
Q Consensus 112 ~~~~~l~V~nlp~~~-t----~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l 186 (370)
..+++|+|.||+..+ . .+.++++|..|+++.....++. -.-..|.|.++++|.+|...||+..+.|+.+
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 456789999998765 2 2678999999999988887754 2247899999999999999999999999999
Q ss_pred EEEEeec
Q psy2983 187 KVGTVTD 193 (370)
Q Consensus 187 ~V~~~~~ 193 (370)
+|-++.+
T Consensus 77 r~YFgq~ 83 (104)
T 1wey_A 77 KLYFAQT 83 (104)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999874
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.25 E-value=0.0014 Score=48.86 Aligned_cols=69 Identities=14% Similarity=0.316 Sum_probs=57.4
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCC--cccEEEEEECCHHHHHHHHHHhCCceeCC
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGR--SKGYGFITFHSADDAKKAQEQLNGFELAG 183 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~--~~g~afV~f~~~~~a~~A~~~l~g~~i~g 183 (370)
.+|.|++||+.+|++++.+.+.+...+....+.....+.+ .-.-|+|.|.+.+++..-...++|+.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4799999999999999999999998887777766544332 22359999999999999999999998864
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.16 E-value=0.0016 Score=48.66 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=46.9
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhC
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLN 177 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 177 (370)
.+.+++ ++|+.+...||.++|++||.| .|+.+-|. -|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 456677 999999999999999999955 57777663 79999999999999999763
No 387
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.09 E-value=0.0077 Score=45.49 Aligned_cols=74 Identities=22% Similarity=0.303 Sum_probs=61.3
Q ss_pred CCceEEEecCCCCCCHHHHHhcccC-----CCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEP-----FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~-----~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 187 (370)
...+|.|.|||..+.++.|.-+|++ -|.|..++... +-|+|+|.+.+.|++.++ -..+.+.+.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 3478999999999999999999987 26898888753 469999999999999987 347888999999
Q ss_pred EEEeecCC
Q psy2983 188 VGTVTDRN 195 (370)
Q Consensus 188 V~~~~~~~ 195 (370)
|....++.
T Consensus 78 V~P~~~~~ 85 (104)
T 2dhx_A 78 LRPAPPRA 85 (104)
T ss_dssp EEECCCCC
T ss_pred EEcCCCCC
Confidence 97755443
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.01 E-value=0.0012 Score=49.09 Aligned_cols=68 Identities=18% Similarity=0.326 Sum_probs=53.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCC--CeecEEEEEecCCCChHHHhh-ccCCccCC
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTR--RFKGIAYIEFKDPESVPLAMG-LNGQKLLG 84 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~--~~kg~afVeF~~~e~A~~Al~-l~g~~i~g 84 (370)
.+|-|++||+++||+++.+.+.....+.-........+. ..-.-|||.|.+.+++....+ ++|..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 479999999999999999999998877666555433221 223469999999999988885 89888743
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.97 E-value=0.0037 Score=47.42 Aligned_cols=74 Identities=16% Similarity=0.217 Sum_probs=60.7
Q ss_pred CCCeEEEcCCCCCC-cH----HHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHh-hccCCccCCeeEE
Q psy2983 15 DARTIFCMQLSQRI-RT----RDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGIPII 88 (370)
Q Consensus 15 ~~r~v~V~nLp~~~-te----~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~i~g~~l~ 88 (370)
-..+|+|.||+..+ .. +.++++|..|+++......+.= +-..|.|.++++|.+|- +|++..++|+.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35789999999765 32 5678899999998887776532 34789999999999999 5999999999999
Q ss_pred Eecccc
Q psy2983 89 VQPTQA 94 (370)
Q Consensus 89 v~~~~~ 94 (370)
+-..+.
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 988763
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.94 E-value=0.0013 Score=51.23 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=59.0
Q ss_pred cCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCC-eeEEEec
Q psy2983 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLG-IPIIVQP 91 (370)
Q Consensus 13 ~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g-~~l~v~~ 91 (370)
....+-|.|-+.|+.. ...|...|++||.|.+.... ....+-.|.|.+..+|++||..||..+.| ..|-|.+
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 4456789999999984 77888999999999987751 22468999999999999999999999985 4555555
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.73 E-value=0.0015 Score=48.75 Aligned_cols=57 Identities=21% Similarity=0.476 Sum_probs=46.1
Q ss_pred cccCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh
Q psy2983 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG 76 (370)
Q Consensus 11 ~~~~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~ 76 (370)
......+.+++ ++|+.+...||.++|++||.|. |+.+-|. .|||.|.+++.|..|+.
T Consensus 11 ~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 11 LQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHH
T ss_pred CCCCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 33344566777 9999999999999999999554 5556553 59999999999999996
No 392
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.56 E-value=0.0017 Score=62.92 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=47.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhhccCCccCC
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLG 84 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~l~g~~i~g 84 (370)
...|+|+|. .|..+++.+|.++|++||+|.++.+-.+. .-||.|||.+.+++..+++..+....+
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~~~p~~~ 115 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGTHTPXXX 115 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSCCCCCCB
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhccCCCccc
Confidence 456999998 79999999999999999999998776543 369999999999999888655544443
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.48 E-value=0.0026 Score=47.61 Aligned_cols=51 Identities=24% Similarity=0.483 Sum_probs=42.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh
Q psy2983 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG 76 (370)
Q Consensus 17 r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~ 76 (370)
+.++| ++|+.+...||.++|++||. ..|..+-|. .|||.|.+++.|..|+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 45666 99999999999999999993 335555543 59999999999999996
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.43 E-value=0.0042 Score=46.49 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=46.2
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhC
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLN 177 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 177 (370)
+.++| ++|+.+...||.++|++||.| .|+.+-|. -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999944 67777663 79999999999999999775
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.31 E-value=0.008 Score=45.04 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=52.1
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCC--cccEEEEEECCHHHHHHHHHHhCCceeCC
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGR--SKGYGFITFHSADDAKKAQEQLNGFELAG 183 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~--~~g~afV~f~~~~~a~~A~~~l~g~~i~g 183 (370)
+.+|.|+.||+.+|++++.+.+++.-.+....+.....+.+ .-.-|+|.|.+.++...-.+..+|..+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 46899999999999999999988765544333332222211 12248999999999999999999988754
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.93 E-value=0.025 Score=44.03 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=57.4
Q ss_pred CCceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCceeCC-eeEEEEEe
Q psy2983 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG-RPMKVGTV 191 (370)
Q Consensus 113 ~~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g-~~l~V~~~ 191 (370)
...-|.|-+.|... ...+...|++||.|.+.... . ....-.|.|.+..+|++|+. .||..+.| -.|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 35679999999885 56778889999999887752 1 24589999999999999999 79999985 56666654
Q ss_pred e
Q psy2983 192 T 192 (370)
Q Consensus 192 ~ 192 (370)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.97 E-value=0.0082 Score=44.98 Aligned_cols=71 Identities=17% Similarity=0.341 Sum_probs=48.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCC--CCeecEEEEEecCCCChHHHhh-ccCCccCC
Q psy2983 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKT--RRFKGIAYIEFKDPESVPLAMG-LNGQKLLG 84 (370)
Q Consensus 14 ~~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~--~~~kg~afVeF~~~e~A~~Al~-l~g~~i~g 84 (370)
-.+-+|-|+.||+++||+++.+.++..-.+.-........+ ...-.-|||.|.+.++.....+ .+|..|.+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 35678999999999999998888877534322211111111 1112459999999999998885 88887743
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.81 E-value=0.014 Score=56.63 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=41.5
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHH
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~ 174 (370)
+.|+|. .|..+++.+|.++|++||+|.++.+.++. .-||.|||.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 579998 69999999999999999999999887653 3599999999999987765
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.29 E-value=0.024 Score=44.80 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=55.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEeee-----------CCCC--CeecEEEEEecCCCChHHHhhccCC
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRD-VRLITC-----------NKTR--RFKGIAYIEFKDPESVPLAMGLNGQ 80 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~-v~i~~d-----------~~~~--~~kg~afVeF~~~e~A~~Al~l~g~ 80 (370)
...-|.|-+.|+. ....+.+.|++||.|.+ +...+. ++-. ....+..|.|.+..+|.+||..||.
T Consensus 6 ~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 6 GELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp --CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred CceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 3456889999765 55667889999999866 211110 0000 1356889999999999999999999
Q ss_pred ccCCeeEEEeccc
Q psy2983 81 KLLGIPIIVQPTQ 93 (370)
Q Consensus 81 ~i~g~~l~v~~~~ 93 (370)
.|.|..|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999866666554
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.99 E-value=0.24 Score=39.09 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=53.5
Q ss_pred ceEEEecCCCCCCHHHHHhcccCCCceee-EEEeecC------------CCC-CcccEEEEEECCHHHHHHHHHHhCCce
Q psy2983 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDN-IQLMVDP------------DTG-RSKGYGFITFHSADDAKKAQEQLNGFE 180 (370)
Q Consensus 115 ~~l~V~nlp~~~t~e~l~~~f~~~G~i~~-v~~~~~~------------~~g-~~~g~afV~f~~~~~a~~A~~~l~g~~ 180 (370)
.-|.|-+.|+... ..+.+.|++||.|.+ +....+. ..+ ...+.-.|+|.+..+|.+|+. -||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4577888876655 556678999999866 2221100 000 134578999999999999999 79999
Q ss_pred eCCeeEEEEEe
Q psy2983 181 LAGRPMKVGTV 191 (370)
Q Consensus 181 i~g~~l~V~~~ 191 (370)
|.|.-|-|.+.
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99987777664
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=79.01 E-value=2.1 Score=42.00 Aligned_cols=53 Identities=23% Similarity=0.484 Sum_probs=42.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeeCCCCCeecEEEEEecCCCChHHHhh
Q psy2983 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG 76 (370)
Q Consensus 15 ~~r~v~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~A~~Al~ 76 (370)
..+.++|+ +|..+...+|.+.|+.||.+ +|..+.+ ..|||.|.+.+.|..++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHH
Confidence 34567776 99999999999999999954 3444432 359999999999999985
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=78.69 E-value=4.7 Score=39.46 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=45.5
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCC
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNG 178 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 178 (370)
+..++++ +|..+...+|.++|+.||.+ .|+.+-+ ..|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4566666 99999999999999999954 5655533 2699999999999999998853
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=49.85 E-value=63 Score=23.28 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=45.7
Q ss_pred CceEEEecCCCCCCHHHHHhcccCCCceeeEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhC
Q psy2983 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLN 177 (370)
Q Consensus 114 ~~~l~V~nlp~~~t~e~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 177 (370)
..-+-|-|+|..+-..++.-.....|---.+..+ -|.|.+.|.+.++...|+..|-
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 4568899999999988887777777866666665 3569999999999999999874
No 404
>1ceu_A Protein (HIV-1 regulatory protein N-terminal domain VPR); helical domain, amphipaticity, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1fi0_A
Probab=42.40 E-value=19 Score=23.04 Aligned_cols=18 Identities=22% Similarity=0.665 Sum_probs=16.2
Q ss_pred chhhHHhHHHHHHHHhhc
Q psy2983 287 PTWDVEIRDDVIEECNKH 304 (370)
Q Consensus 287 d~~~~ei~eDv~~Ec~ky 304 (370)
++|..|+.++|++|+.++
T Consensus 16 ~eW~le~LeElk~EAvrH 33 (51)
T 1ceu_A 16 NDWTLELLEELKNEAVRH 33 (51)
T ss_dssp SHHHHHHHHHHHHHTTTS
T ss_pred cHHHHHHHHHHHHHHHHh
Confidence 589999999999999873
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=34.20 E-value=83 Score=25.73 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=35.3
Q ss_pred eEEEcCCCC-C--------CcHHHHHHHh--hcCCCeeEEEEeeeCCCCCeecEEEEEecCCCC
Q psy2983 18 TIFCMQLSQ-R--------IRTRDLEEFF--SSVGKVRDVRLITCNKTRRFKGIAYIEFKDPES 70 (370)
Q Consensus 18 ~v~V~nLp~-~--------~te~~L~~~f--~~~G~v~~v~i~~d~~~~~~kg~afVeF~~~e~ 70 (370)
++.|-|+|. . .+..+|++.| ..|.++. |+.+.++. -+.|+|.|+|.+.-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChH
Confidence 466777776 2 4568999977 8898866 55555543 357899999977543
No 406
>2ln3_A De novo designed protein OR135; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=33.39 E-value=42 Score=22.36 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=25.8
Q ss_pred CCCchhhHHhHHHHHHHHhhcCceeeEEEEEEEEEEEEEEE
Q psy2983 284 ETNPTWDVEIRDDVIEECNKHGVGASTVCFIYSVIFLKLWS 324 (370)
Q Consensus 284 l~~d~~~~ei~eDv~~Ec~kyG~~~~~~~~~y~~~~~k~~~ 324 (370)
-+||.+.+|.+.|+++.+.|-|. .+-|.|.
T Consensus 35 stddkeieeferdmedlakktgv-----------qiqkqwq 64 (83)
T 2ln3_A 35 STDDKEIEEFERDMEDLAKKTGV-----------QIQKQWQ 64 (83)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTC-----------CEEEEEE
T ss_pred CCChHHHHHHHhHHHHHHHhhch-----------hHHHHhc
Confidence 37899999999999999999995 5678874
No 407
>1esx_A VPR protein; helix, amphipatic, turn, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1m8l_A 1vpc_A 1x9v_A
Probab=32.37 E-value=33 Score=25.15 Aligned_cols=18 Identities=17% Similarity=0.529 Sum_probs=16.4
Q ss_pred CchhhHHhHHHHHHHHhh
Q psy2983 286 NPTWDVEIRDDVIEECNK 303 (370)
Q Consensus 286 ~d~~~~ei~eDv~~Ec~k 303 (370)
-++|..|+.+||++|+.+
T Consensus 15 ~~eW~le~LeELk~EAvr 32 (96)
T 1esx_A 15 YNDWTLELLEELKNEAVR 32 (96)
T ss_dssp STHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 368999999999999988
No 408
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=25.75 E-value=30 Score=23.01 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=15.2
Q ss_pred hhHHhH-HHHHHHHhhcCcee
Q psy2983 289 WDVEIR-DDVIEECNKHGVGA 308 (370)
Q Consensus 289 ~~~ei~-eDv~~Ec~kyG~~~ 308 (370)
+..++. ++|++.|++-||..
T Consensus 25 LLksvds~eV~~YC~~kGwIi 45 (60)
T 1ng7_A 25 LLQAVDSQEVRDYCEKKGWIV 45 (60)
T ss_dssp HHHHHCCHHHHHHHHHHTCCC
T ss_pred HHHcCCCHHHHHHHHHCCcee
Confidence 444555 78899999999953
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=23.44 E-value=1.2e+02 Score=24.72 Aligned_cols=56 Identities=9% Similarity=0.140 Sum_probs=36.1
Q ss_pred eEEEecCCC---------CCCHHHHHhcc--cCCCceeeEEEeecCCCCCcccEEEEEECCH-HHHHHHHH
Q psy2983 116 RLYIGSLHF---------NITEDMLRGIF--EPFGKIDNIQLMVDPDTGRSKGYGFITFHSA-DDAKKAQE 174 (370)
Q Consensus 116 ~l~V~nlp~---------~~t~e~l~~~f--~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~-~~a~~A~~ 174 (370)
...|-|+|. ..+..+|++.| ..|.+++ ++.+.++ ..+.|+|.|+|.+. .--..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 355666665 24557899977 9999875 4555553 34789999999643 33344443
Done!