Your job contains 1 sequence.
>psy2983
MRPAYSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGI
AYIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIG
SLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE
LAGRPMKVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPPA
AASALNLAQNAILNSSTPQVSSSTAPPIATQCFLLANMFDPATETNPTWDVEIRDDVIEE
CNKHGVGASTVCFIYSVIFLKLWSYVQVNLWCRHARKQDNPGHQRRQSMSANATSIEILS
SHGLLALVIS
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2983
(370 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ... 1110 1.8e-112 1
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 859 1.8e-101 2
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 859 2.8e-101 2
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 859 2.8e-101 2
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 859 2.8e-101 2
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 859 2.8e-101 2
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"... 981 8.2e-99 1
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"... 981 8.2e-99 1
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 981 8.2e-99 1
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 979 1.3e-98 1
ZFIN|ZDB-GENE-050327-97 - symbol:rbm39b "RNA binding moti... 962 8.4e-97 1
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 787 1.1e-93 2
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 859 6.9e-86 1
UNIPROTKB|I3LPP8 - symbol:RBM23 "Uncharacterized protein"... 804 4.7e-80 1
UNIPROTKB|E2QVA8 - symbol:RBM23 "Uncharacterized protein"... 803 6.0e-80 1
UNIPROTKB|Q86U06 - symbol:RBM23 "Probable RNA-binding pro... 801 9.7e-80 1
UNIPROTKB|F1MY46 - symbol:RBM23 "Uncharacterized protein"... 765 6.3e-76 1
UNIPROTKB|G3XAP0 - symbol:RBM23 "RNA binding motif protei... 726 8.6e-72 1
UNIPROTKB|F6XHX3 - symbol:RBM23 "Uncharacterized protein"... 713 2.1e-70 1
UNIPROTKB|J9P448 - symbol:RBM23 "Uncharacterized protein"... 705 1.4e-69 1
UNIPROTKB|H0Y4X3 - symbol:RBM39 "RNA-binding protein 39" ... 647 2.0e-63 1
UNIPROTKB|D4A5G0 - symbol:Rbm39 "Protein Rbm39" species:1... 647 2.0e-63 1
WB|WBGene00021921 - symbol:Y55F3AM.3 species:6239 "Caenor... 645 3.3e-63 1
TAIR|locus:2178198 - symbol:AT5G09880 species:3702 "Arabi... 590 2.2e-57 1
POMBASE|SPAC19G12.07c - symbol:rsd1 "RNA-binding protein ... 407 4.7e-49 2
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer... 447 1.9e-48 3
UNIPROTKB|H0YJJ3 - symbol:RBM23 "Probable RNA-binding pro... 473 5.6e-45 1
UNIPROTKB|G3V5Z6 - symbol:RBM23 "Probable RNA-binding pro... 459 1.7e-43 1
UNIPROTKB|G3V546 - symbol:RBM23 "Probable RNA-binding pro... 420 2.3e-39 1
GENEDB_PFALCIPARUM|MAL13P1.120 - symbol:MAL13P1.120 "spli... 369 6.6e-38 2
UNIPROTKB|Q8IE99 - symbol:MAL13P1.120 "Splicing factor, p... 369 6.6e-38 2
DICTYBASE|DDB_G0283687 - symbol:DDB_G0283687 "RNA-binding... 345 8.9e-38 2
UNIPROTKB|Q5QP23 - symbol:RBM39 "RNA-binding protein 39" ... 339 8.8e-31 1
UNIPROTKB|Q5QP21 - symbol:RBM39 "RNA-binding protein 39" ... 311 8.2e-28 1
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 259 1.2e-21 1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 225 2.8e-16 1
UNIPROTKB|H0YCP8 - symbol:PUF60 "Poly(U)-binding-splicing... 204 4.1e-16 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 204 4.1e-16 1
UNIPROTKB|E9PQ56 - symbol:PUF60 "Poly(U)-binding-splicing... 216 5.1e-16 1
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 216 7.2e-16 2
UNIPROTKB|H0YEM1 - symbol:PUF60 "Poly(U)-binding-splicing... 216 7.4e-16 1
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 216 7.7e-16 2
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 216 7.7e-16 2
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 216 8.6e-16 2
TAIR|locus:2028451 - symbol:NUC-L1 "nucleolin like 1" spe... 222 8.8e-16 1
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 216 9.7e-16 2
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 216 9.7e-16 2
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 216 1.0e-15 2
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 216 1.0e-15 2
UNIPROTKB|F1NA97 - symbol:LOC426301 "Uncharacterized prot... 216 1.3e-15 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 220 1.3e-15 1
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 214 1.7e-15 3
UNIPROTKB|I3LVL9 - symbol:PUF60 "Uncharacterized protein"... 216 1.9e-15 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 205 2.2e-15 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 211 3.5e-15 1
UNIPROTKB|Q5QP22 - symbol:RBM39 "RNA-binding protein 39" ... 195 4.2e-15 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 202 4.8e-15 1
ZFIN|ZDB-GENE-030131-6986 - symbol:ncl "nucleolin" specie... 217 5.4e-15 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 212 5.5e-15 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 212 5.5e-15 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 207 1.7e-14 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 207 1.8e-14 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 205 3.0e-14 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 204 4.4e-14 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 204 4.4e-14 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 204 4.4e-14 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 203 5.0e-14 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 203 5.7e-14 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 203 5.8e-14 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 203 6.1e-14 1
ZFIN|ZDB-GENE-040625-116 - symbol:puf60b "poly-U binding ... 200 6.7e-14 2
WB|WBGene00004389 - symbol:rnp-6 species:6239 "Caenorhabd... 198 9.0e-14 3
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 201 9.7e-14 1
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 196 2.6e-13 1
TAIR|locus:2086884 - symbol:NUC-L2 "nucleolin like 2" spe... 201 3.2e-13 1
DICTYBASE|DDB_G0285403 - symbol:DDB_G0285403 "RNA-binding... 196 3.9e-13 3
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 185 3.9e-13 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 200 4.1e-13 1
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 177 4.4e-13 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 177 4.4e-13 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 177 4.4e-13 1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 193 4.8e-13 1
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 196 4.8e-13 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 197 5.3e-13 1
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 184 5.8e-13 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 194 5.9e-13 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 198 7.3e-13 1
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 191 8.3e-13 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 197 9.1e-13 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 197 9.1e-13 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 194 9.1e-13 1
DICTYBASE|DDB_G0274523 - symbol:DDB_G0274523 "RNA recogni... 199 9.5e-13 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 196 1.0e-12 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 191 1.1e-12 1
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 192 1.2e-12 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 193 1.2e-12 1
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 196 1.2e-12 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 196 1.2e-12 1
TAIR|locus:2825067 - symbol:BRN2 "Bruno-like 2" species:3... 143 1.3e-12 2
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 195 1.4e-12 1
WARNING: Descriptions of 1326 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
Identities = 215/298 (72%), Positives = 242/298 (81%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+LSPEERDART+FC+QLSQR+R RDLEEFFSSVGKVRDVRLITCNKT+RFKGIAYIEF D
Sbjct: 228 ELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDD 287
Query: 68 PESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
PESV LA+GL+GQ+LLG+PI+VQ TQAEKNR N P QP+ GPMRLY+GSLHFNIT
Sbjct: 288 PESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNIT 347
Query: 128 EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
EDMLRGIFEPFGKID IQL++D +TGRSKGYGFIT+H+ADDAKKA EQLNGFELAGR MK
Sbjct: 348 EDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMK 407
Query: 188 VGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPPXXXXXXXX 247
VG VT+R + ++LDTDEM+R G+DLGATGRLQLMFKLAEG GL +P
Sbjct: 408 VGNVTERLDM---NTTSLDTDEMDRTGIDLGATGRLQLMFKLAEGAGLAVPQAAANALLA 464
Query: 248 XXXXXXXXXTPQVSSSTAPPIATQCFLLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
P AP IATQCF+L+NMFDP TETNPTWDVEIRDDV+EEC KHG
Sbjct: 465 TAPQPA----PLQQQEVAPSIATQCFILSNMFDPRTETNPTWDVEIRDDVLEECAKHG 518
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 859 (307.4 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
Identities = 166/233 (71%), Positives = 199/233 (85%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D SVPLA+GL GQ++LG+PIIVQ +QAEKNRA NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ-KGSAGPMRLYVGSLHFNI 261
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFG+I++IQLM+D +TGRSKGYGFITF ++ AKKA EQLNGFELAGRPM
Sbjct: 262 TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 321
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPP 239
KVG VT+R ++ S LD+DE+ER G+DLG TGRLQLM +LAEGTGL++PP
Sbjct: 322 KVGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPP 373
Score = 167 (63.8 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 257 TPQVSSSTAPPIATQCFLLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
T ++++ P+ATQCF L+NMF+P TE WD EI+DDVIEECNKHG
Sbjct: 409 TVLAAAASVQPLATQCFQLSNMFNPQTEEEAGWDTEIKDDVIEECNKHG 457
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 859 (307.4 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
Identities = 166/233 (71%), Positives = 199/233 (85%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D SVPLA+GL GQ++LG+PIIVQ +QAEKNRA NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ-KGSAGPMRLYVGSLHFNI 261
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFG+I++IQLM+D +TGRSKGYGFITF ++ AKKA EQLNGFELAGRPM
Sbjct: 262 TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 321
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPP 239
KVG VT+R ++ S LD+DE+ER G+DLG TGRLQLM +LAEGTGL++PP
Sbjct: 322 KVGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPP 373
Score = 165 (63.1 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
Identities = 28/45 (62%), Positives = 36/45 (80%)
Query: 261 SSSTAPPIATQCFLLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
++++ P+ATQCF L+NMF+P TE WD EI+DDVIEECNKHG
Sbjct: 414 AAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG 458
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 859 (307.4 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
Identities = 166/233 (71%), Positives = 199/233 (85%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D SVPLA+GL GQ++LG+PIIVQ +QAEKNRA NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ-KGSAGPMRLYVGSLHFNI 261
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFG+I++IQLM+D +TGRSKGYGFITF ++ AKKA EQLNGFELAGRPM
Sbjct: 262 TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 321
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPP 239
KVG VT+R ++ S LD+DE+ER G+DLG TGRLQLM +LAEGTGL++PP
Sbjct: 322 KVGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPP 373
Score = 165 (63.1 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
Identities = 28/45 (62%), Positives = 36/45 (80%)
Query: 261 SSSTAPPIATQCFLLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
++++ P+ATQCF L+NMF+P TE WD EI+DDVIEECNKHG
Sbjct: 414 AAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG 458
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 859 (307.4 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
Identities = 166/233 (71%), Positives = 199/233 (85%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D SVPLA+GL GQ++LG+PIIVQ +QAEKNRA NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ-KGSAGPMRLYVGSLHFNI 261
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFG+I++IQLM+D +TGRSKGYGFITF ++ AKKA EQLNGFELAGRPM
Sbjct: 262 TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 321
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPP 239
KVG VT+R ++ S LD+DE+ER G+DLG TGRLQLM +LAEGTGL++PP
Sbjct: 322 KVGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPP 373
Score = 165 (63.1 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
Identities = 28/45 (62%), Positives = 36/45 (80%)
Query: 261 SSSTAPPIATQCFLLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
++++ P+ATQCF L+NMF+P TE WD EI+DDVIEECNKHG
Sbjct: 414 AAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG 458
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 859 (307.4 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
Identities = 166/233 (71%), Positives = 199/233 (85%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D SVPLA+GL GQ++LG+PIIVQ +QAEKNRA NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ-KGSAGPMRLYVGSLHFNI 261
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFG+I++IQLM+D +TGRSKGYGFITF ++ AKKA EQLNGFELAGRPM
Sbjct: 262 TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 321
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPP 239
KVG VT+R ++ S LD+DE+ER G+DLG TGRLQLM +LAEGTGL++PP
Sbjct: 322 KVGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPP 373
Score = 165 (63.1 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
Identities = 28/45 (62%), Positives = 36/45 (80%)
Query: 261 SSSTAPPIATQCFLLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
++++ P+ATQCF L+NMF+P TE WD EI+DDVIEECNKHG
Sbjct: 414 AAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG 458
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
Identities = 196/312 (62%), Positives = 236/312 (75%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D SVPLA+GL GQ++LG+PIIVQ +QAEKNRA NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ-KGSAGPMRLYVGSLHFNI 261
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFG+I++IQLM+D +TGRSKGYGFITF ++ AKKA EQLNGFELAGRPM
Sbjct: 262 TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 321
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPPXXXXXXX 246
KVG VT+R ++ S LD+DE+ER G+DLG TGRLQLM +LAEGTGL++PP
Sbjct: 322 KVGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQ 380
Query: 247 XXXXXXXXXX-------TPQVSSS------TAPPIATQCFLLANMFDPATETNPTWDVEI 293
+ Q +S + P+ATQCF L+NMF+P TE WD EI
Sbjct: 381 MSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEI 440
Query: 294 RDDVIEECNKHG 305
+DDVIEECNKHG
Sbjct: 441 KDDVIEECNKHG 452
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
Identities = 196/312 (62%), Positives = 236/312 (75%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D SVPLA+GL GQ++LG+PIIVQ +QAEKNRA NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ-KGSAGPMRLYVGSLHFNI 261
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFG+I++IQLM+D +TGRSKGYGFITF ++ AKKA EQLNGFELAGRPM
Sbjct: 262 TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 321
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPPXXXXXXX 246
KVG VT+R ++ S LD+DE+ER G+DLG TGRLQLM +LAEGTGL++PP
Sbjct: 322 KVGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQ 380
Query: 247 XXXXXXXXXX-------TPQVSSS------TAPPIATQCFLLANMFDPATETNPTWDVEI 293
+ Q +S + P+ATQCF L+NMF+P TE WD EI
Sbjct: 381 MSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEI 440
Query: 294 RDDVIEECNKHG 305
+DDVIEECNKHG
Sbjct: 441 KDDVIEECNKHG 452
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
Identities = 196/312 (62%), Positives = 236/312 (75%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D SVPLA+GL GQ++LG+PIIVQ +QAEKNRA NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ-KGSAGPMRLYVGSLHFNI 261
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFG+I++IQLM+D +TGRSKGYGFITF ++ AKKA EQLNGFELAGRPM
Sbjct: 262 TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 321
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPPXXXXXXX 246
KVG VT+R ++ S LD+DE+ER G+DLG TGRLQLM +LAEGTGL++PP
Sbjct: 322 KVGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQ 380
Query: 247 XXXXXXXXXX-------TPQVSSS------TAPPIATQCFLLANMFDPATETNPTWDVEI 293
+ Q +S + P+ATQCF L+NMF+P TE WD EI
Sbjct: 381 MSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEI 440
Query: 294 RDDVIEECNKHG 305
+DDVIEECNKHG
Sbjct: 441 KDDVIEECNKHG 452
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
Identities = 199/315 (63%), Positives = 237/315 (75%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAYIEF
Sbjct: 139 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRRSKGIAYIEFV 198
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D SVPLA+GL+GQ+LLG+PIIVQ +QAEKNRA NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 199 DSTSVPLAIGLSGQRLLGVPIIVQASQAEKNRAAALANNLQ-KGSAGPMRLYVGSLHFNI 257
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFG+ID+IQLM+D +TGRSKGYGFITF A+ AKKA EQLNGFELAGRPM
Sbjct: 258 TEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPM 317
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPPXXXXX-- 244
KVG VT+R ++ S LD DE+ER G+DLG TGRLQLM +LAEGTGL++PP
Sbjct: 318 KVGHVTERTDA-STASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQ 376
Query: 245 ---XXXXXXXXXXXXTPQVSSS-TAP----------PIATQCFLLANMFDPATETNPTWD 290
P +S + P PIAT CF L+NMF+P +E + W+
Sbjct: 377 MSGSMVAMAAATAAMNPGLSFNINVPTNQALNLPSQPIATHCFQLSNMFNPNSENDHGWE 436
Query: 291 VEIRDDVIEECNKHG 305
+EI+DDVIEECNKHG
Sbjct: 437 IEIQDDVIEECNKHG 451
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
Identities = 195/313 (62%), Positives = 229/313 (73%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+LSPEERDART+FCMQL+ RIR RDLE+FFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 157 DNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRMISDRNSRRSKGIAYVEFV 216
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D SVPLA+GL GQ++LG+PIIVQ +QAEKNRA LQ RG GPMRLY+GSLHFNI
Sbjct: 217 DSTSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMASMLQ-RGGAGPMRLYVGSLHFNI 275
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFGKI+ IQLM+D +TGRSKGYGFI+F A+ AKKA EQLNGFELAGRPM
Sbjct: 276 TEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFELAGRPM 335
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPPXXXXXXX 246
KVG VT+R+++ S LD DE+ER G+DLG TGRLQLM +LAEGTGL++P
Sbjct: 336 KVGHVTERSDA-SSASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLQIPAAAKQALQ 394
Query: 247 XXXXXXX-----XXXTP---------QVSSSTAPPIATQCFLLANMFDPATETNPTWDVE 292
TP Q + P+AT C L+NMF+P E P WD+E
Sbjct: 395 MSGSVSFGNMPNASATPPLIPNPGMNQAMNLPTQPLATHCLQLSNMFNPQMENEPGWDIE 454
Query: 293 IRDDVIEECNKHG 305
IRDDVIEEC KHG
Sbjct: 455 IRDDVIEECRKHG 467
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 787 (282.1 bits), Expect = 1.1e-93, Sum P(2) = 1.1e-93
Identities = 154/218 (70%), Positives = 184/218 (84%)
Query: 22 MQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQK 81
MQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAY+EF D SVPLA+GL GQ+
Sbjct: 1 MQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQR 60
Query: 82 LLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKI 141
+LG+PIIVQ +QAEKNRA NLQ +G+ GPMRLY+GSLHFNITEDMLRGIFEPFG+I
Sbjct: 61 VLGVPIIVQASQAEKNRAAAMANNLQ-KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRI 119
Query: 142 DNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVGGG 201
++IQLM+D +TGRSKGYGFITF ++ AKKA EQLNGFELAGRPMKVG VT+R ++
Sbjct: 120 ESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDA-SSA 178
Query: 202 PSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPP 239
S LD+DE+ER G+DLG TGRLQLM +LAEGTGL++PP
Sbjct: 179 SSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPP 216
Score = 165 (63.1 bits), Expect = 1.1e-93, Sum P(2) = 1.1e-93
Identities = 28/45 (62%), Positives = 36/45 (80%)
Query: 261 SSSTAPPIATQCFLLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
++++ P+ATQCF L+NMF+P TE WD EI+DDVIEECNKHG
Sbjct: 257 AAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG 301
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
Identities = 166/233 (71%), Positives = 199/233 (85%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D SVPLA+GL GQ++LG+PIIVQ +QAEKNRA NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ-KGSAGPMRLYVGSLHFNI 261
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFG+I++IQLM+D +TGRSKGYGFITF ++ AKKA EQLNGFELAGRPM
Sbjct: 262 TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 321
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPP 239
KVG VT+R ++ S LD+DE+ER G+DLG TGRLQLM +LAEGTGL++PP
Sbjct: 322 KVGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPP 373
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
Identities = 168/283 (59%), Positives = 212/283 (74%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+LSPEERDART+FCMQL+ RIR RDLE+FFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 147 DNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFC 206
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
+ +SVPLA+GL GQ+LLG+PIIVQ +QAEKNR NLQ +GTGGPMRLY+GSLHFNI
Sbjct: 207 EIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQ-KGTGGPMRLYVGSLHFNI 265
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFGKIDNI LM D DTGRSKGYGFITF ++ A++A EQLNGFELAGRPM
Sbjct: 266 TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 325
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLG-ATGRLQLMFKLAEGTGLELPPXXXXXX 245
++G VT+R + G +++ + ++ +DLG A GRLQLM KLAEG+G++LP
Sbjct: 326 RIGHVTERLD----GSTDITFPDGDQE-LDLGSAGGRLQLMAKLAEGSGIQLPTTALQLN 380
Query: 246 XXXXX-----XXXXXXTPQVSSSTAPPIATQCFLLANMFDPAT 283
+P ++ ++ IA+QCF L+++F P T
Sbjct: 381 GAVPLGALNPAALTALSPALNLASQA-IASQCFQLSSLFTPQT 422
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
Identities = 170/289 (58%), Positives = 207/289 (71%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+LSPEERDART+FCMQL+ RIR RDLE+FFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 157 DNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFC 216
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
+ +SVPLA+GL GQ+LLG+PIIVQ +QAEKNR NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 217 EIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQ-KGSSGPMRLYVGSLHFNI 275
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFGKIDNI LM D DTGRSKGYGFITF ++ A++A EQLNGFELAGRPM
Sbjct: 276 TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 335
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLG-ATGRLQLMFKLAEGTGLELPPXXXXXX 245
+VG VT+R + GG E E +DLG A GRLQLM KLAEG+G++LP
Sbjct: 336 RVGHVTERLD--GGTDITFPDGEQE---LDLGSAGGRLQLMAKLAEGSGIQLPTTAAAAA 390
Query: 246 XXXXXXXXXXXT---------PQVSSSTAPPI--ATQCFLLANMFDPAT 283
P ++ +P + A+QCF L+++F P T
Sbjct: 391 AAAQAAAALQLNGTVPLGGLNPAALTALSPALNLASQCFQLSSLFTPQT 439
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
Identities = 169/289 (58%), Positives = 205/289 (70%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+LSPEERDART+FCMQL+ RIR RDLE+FFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 156 DNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFC 215
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
+ +SVPLA+GL GQ+LLG+PIIVQ +QAEKNR NLQ +G GGPMRLY+GSLHFNI
Sbjct: 216 EIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQ-KGNGGPMRLYVGSLHFNI 274
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGIFEPFGKIDNI LM D DTGRSKGYGFITF ++ A++A EQLNGFELAGRPM
Sbjct: 275 TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 334
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLG-ATGRLQLMFKLAEGTGLELPPXXXXXX 245
+VG VT+R + GG + E +DLG A GR QLM KLAEG G++LP
Sbjct: 335 RVGHVTERLD--GGTDITFPDGDQE---LDLGSAGGRFQLMAKLAEGAGIQLPSTAAAAA 389
Query: 246 XXXXXXXXX---------XXTPQVSSSTAPPI--ATQCFLLANMFDPAT 283
P ++ +P + A+QCF L+++F P T
Sbjct: 390 AAAAQAAALQLNGAVPLGALNPAALTALSPALNLASQCFQLSSLFTPQT 438
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 167/298 (56%), Positives = 207/298 (69%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+LSPEERDART+FCMQL+ RIR RDLE+FFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 171 DNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFC 230
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
+ +SVPLA+GL GQ+LLG+PIIVQ +QAEKNR NLQ +G+GGP+RLY+GSLH NI
Sbjct: 231 EIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQ-KGSGGPVRLYVGSLHCNI 289
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TEDMLRGI EPFGKIDNI LM D +TGRSKGYGFITF ++ A++A EQLNGFELAGRPM
Sbjct: 290 TEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 349
Query: 187 KVGTVTDRNESVGGGPSNLDTDEMERAGVDLG-ATGRLQLMFKLAEGTGLELPPXXXXXX 245
++G VT+R + GG + E +DLG A G LQLM KLAEG+G++LP
Sbjct: 350 RIGHVTERPD--GGTDITFPDGDQE---LDLGSAGGHLQLMAKLAEGSGIQLPTTTAAAA 404
Query: 246 XXXXXXXXXXXTPQVSSS-----------TA-PP--------IATQCFLLANMFDPAT 283
Q++ + TA P IA+QCF L+++F P T
Sbjct: 405 AVAQAAAAQAAALQLNGADPLGALNPAALTALSPALNLASQAIASQCFQLSSLFTPQT 462
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 156/274 (56%), Positives = 190/274 (69%)
Query: 22 MQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQK 81
MQL+ RIR RDLE+FFS+VGKVRDVR+I+ +RR KGIAY+EF + +SVPLA+GL GQ+
Sbjct: 1 MQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQR 60
Query: 82 LLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKI 141
LLG+PIIVQ +QAEKNR NLQ +G GGPMRLY+GSLHFNITEDMLRGIFEPFGKI
Sbjct: 61 LLGVPIIVQASQAEKNRLAAMANNLQ-KGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKI 119
Query: 142 DNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVGGG 201
DNI LM D DTGRSKGYGFITF ++ A++A EQLNGFELAGRPM+VG VT+R + GG
Sbjct: 120 DNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD--GGT 177
Query: 202 PSNLDTDEMERAGVDLG-ATGRLQLMFKLAEGTGLELPPXXXXXXXXXXXXXXX------ 254
+ E +DLG A GR QLM KLAEG G++LP
Sbjct: 178 DITFPDGDQE---LDLGSAGGRFQLMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNGAV 234
Query: 255 ---XXTPQVSSSTAPPI--ATQCFLLANMFDPAT 283
P ++ +P + A+QCF L+++F P T
Sbjct: 235 PLGALNPAALTALSPALNLASQCFQLSSLFTPQT 268
>UNIPROTKB|F6XHX3 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
Ensembl:ENSCAFT00000017824 EMBL:AAEX03005604 Uniprot:F6XHX3
Length = 425
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 155/290 (53%), Positives = 196/290 (67%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+LSPEERDART+FCMQL+ RIR RDLE+FFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 141 DNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFC 200
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
+ +SVPLA+GL GQ+LLG+PIIVQ +QAEKNR NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 201 EIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQ-KGSSGPMRLYVGSLHFNI 259
Query: 127 TEDMLRGIFEPFGKID-NIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRP 185
TEDMLRGIFEPFGK+ N+Q + T +S F ++ A++A EQLNGFELAGRP
Sbjct: 260 TEDMLRGIFEPFGKVSRNVQYTNESGTIKSNNRAHTKFSDSECARRALEQLNGFELAGRP 319
Query: 186 MKVGTVTDRNESVGGGPSNLDTDEMERAGVDLG-ATGRLQLMFKLAEGTGLELPPXXXXX 244
M+VG VT+R + GG E E +DLG A GRLQLM KLAEG+G++LP
Sbjct: 320 MRVGHVTERLD--GGTDITFPDGEQE---LDLGSAGGRLQLMAKLAEGSGIQLPTTAAAA 374
Query: 245 XXXXXXXXXXXXT---------PQVSSSTAPPI--ATQCFLLANMFDPAT 283
P ++ +P + A+QCF L+++F P T
Sbjct: 375 AAAAQAAAALQLNGTVPLGGLNPAALTALSPALNLASQCFQLSSLFTPQT 424
>UNIPROTKB|J9P448 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
OMA:VTERLDG TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
EMBL:AAEX03005604 Ensembl:ENSCAFT00000048864 Uniprot:J9P448
Length = 458
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 156/295 (52%), Positives = 196/295 (66%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+LSPEERDART+FCMQL+ RIR RDLE+FFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 169 DNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFC 228
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
+ +SVPLA+GL GQ+LLG+PIIVQ +QAEKNR NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 229 EIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQ-KGSSGPMRLYVGSLHFNI 287
Query: 127 TEDMLRGIFEPFGKID-NIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRP 185
TEDMLRGIFEPFGK+ N+Q + T +S F ++ A++A EQLNGFELAGRP
Sbjct: 288 TEDMLRGIFEPFGKVSRNVQYTNESGTIKSNNRAHTKFSDSECARRALEQLNGFELAGRP 347
Query: 186 MKVGTVTDRNESVGGGPSNLDTDEMERAGVDLG-ATGRLQLMFKLAEGTGLELPPXXXXX 244
M+VG VT+R + GG E E +DLG A GRLQLM KLAEG+G++LP
Sbjct: 348 MRVGHVTERLD--GGTDITFPDGEQE---LDLGSAGGRLQLMAKLAEGSGIQLPTTAAAA 402
Query: 245 XXXXXXXXXXXXT---------PQVSSSTAPP-------IATQCFLLANMFDPAT 283
P ++ +P IA+QCF L+++F P T
Sbjct: 403 AAAAQAAAALQLNGTVPLGGLNPAALTALSPALNLASQAIASQCFQLSSLFTPQT 457
>UNIPROTKB|H0Y4X3 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
HGNC:HGNC:15923 ChiTaRS:RBM39 ProteinModelPortal:H0Y4X3
PRIDE:H0Y4X3 Ensembl:ENST00000448303 Bgee:H0Y4X3 Uniprot:H0Y4X3
Length = 337
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 151/309 (48%), Positives = 187/309 (60%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 16 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 75
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D SVPLA+GL GQ++LG+PIIVQ +QAEKNRA NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 76 DVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ-KGSAGPMRLYVGSLHFNI 134
Query: 127 TEDMLRGIFEPFGKIDNI--------QLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNG 178
TEDMLRGIFEPFG+ + QL GR G +T + DA A L+
Sbjct: 135 TEDMLRGIFEPFGRFSDSECAKKALEQLNGFELAGRPMKVGHVTERT--DASSASSFLDS 192
Query: 179 FELAGRPMKVGTVTDRNESVGGGPSNLDTDEMERAGVDL--GATGRLQLMFKLAEGTGLE 236
EL + +GT G L E G+ + A LQ+ LA G E
Sbjct: 193 DELERTGIDLGTT---------GRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAE 243
Query: 237 LPPXXXXXXXXXXXXXXXXXTPQVSSSTAPPIATQCFLLANMFDPATETNPTWDVEIRDD 296
+ ++++ P+ATQCF L+NMF+P TE WD EI+DD
Sbjct: 244 F---SFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDD 300
Query: 297 VIEECNKHG 305
VIEECNKHG
Sbjct: 301 VIEECNKHG 309
>UNIPROTKB|D4A5G0 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01622 EMBL:AC118414 IPI:IPI00951290
ProteinModelPortal:D4A5G0 Ensembl:ENSRNOT00000068388
ArrayExpress:D4A5G0 Uniprot:D4A5G0
Length = 440
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 151/309 (48%), Positives = 187/309 (60%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 134 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 193
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D SVPLA+GL GQ++LG+PIIVQ +QAEKNRA NLQ +G+ GPMRLY+GSLHFNI
Sbjct: 194 DVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ-KGSAGPMRLYVGSLHFNI 252
Query: 127 TEDMLRGIFEPFGKIDNI--------QLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNG 178
TEDMLRGIFEPFG+ + QL GR G +T + DA A L+
Sbjct: 253 TEDMLRGIFEPFGRFSDSECAKKALEQLNGFELAGRPMKVGHVTERT--DASSASSFLDS 310
Query: 179 FELAGRPMKVGTVTDRNESVGGGPSNLDTDEMERAGVDL--GATGRLQLMFKLAEGTGLE 236
EL + +GT G L E G+ + A LQ+ LA G E
Sbjct: 311 DELERTGIDLGTT---------GRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAE 361
Query: 237 LPPXXXXXXXXXXXXXXXXXTPQVSSSTAPPIATQCFLLANMFDPATETNPTWDVEIRDD 296
+ ++++ P+ATQCF L+NMF+P TE WD EI+DD
Sbjct: 362 F---SFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDD 418
Query: 297 VIEECNKHG 305
VIEECNKHG
Sbjct: 419 VIEECNKHG 427
>WB|WBGene00021921 [details] [associations]
symbol:Y55F3AM.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0040035 EMBL:FO081813 HSSP:Q14103 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 GeneID:176922 KEGG:cel:CELE_Y55F3AM.3
UCSC:Y55F3AM.3a CTD:176922 NextBio:894594 RefSeq:NP_500025.1
ProteinModelPortal:Q9N368 SMR:Q9N368 IntAct:Q9N368 STRING:Q9N368
PRIDE:Q9N368 EnsemblMetazoa:Y55F3AM.3a WormBase:Y55F3AM.3a
InParanoid:Q9N368 ArrayExpress:Q9N368 Uniprot:Q9N368
Length = 580
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 148/312 (47%), Positives = 193/312 (61%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L+ EERD RT+ MQ+++ R RDLEEFFS+VG VRDVR+IT ++T R KGI Y+EF D
Sbjct: 161 ELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWD 220
Query: 68 PESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGN-----TLPNLQPRGTGGPMRLYIGSL 122
ESVPL + LNGQ+L+G P+ +Q T AE+NRA N TL + P G GP + + +L
Sbjct: 221 EESVPLGLALNGQRLMGAPLQIQRTCAERNRAANSSVASTLGFVAP-GNKGPTHVLVENL 279
Query: 123 HFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA 182
H I E M+R IFE FG+I+ I L VD + ++G+ ITF +ADDA+K+ EQLN FELA
Sbjct: 280 HPKIDEKMIRDIFESFGRIEKIDLEVDSNR-ENRGFATITFRNADDAQKSCEQLNNFELA 338
Query: 183 GRPMKVGTVTD------RNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLE 236
GR +++ + + E +LD D +R G LGA GR QLM KLA+GTG
Sbjct: 339 GRCIRLSIKQESQAPAVKKEEASIHQRSLD-DVGDRQGFSLGAGGRQQLMAKLAQGTGSG 397
Query: 237 LPPXXXXXXXXXXXXXXXXXTPQVSSSTAPPIATQCFLLANMFDPATETNPTWDVEIRDD 296
+ S P IATQCFLL+NMFDP+ ET P WD +IR+D
Sbjct: 398 ME----------LTASAQMAAQHAGHSQIPSIATQCFLLSNMFDPSKETEPAWDHDIRED 447
Query: 297 VIEECNKHGVGA 308
VIE+C HG GA
Sbjct: 448 VIEQCLAHG-GA 458
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 132/308 (42%), Positives = 180/308 (58%)
Query: 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVP 72
ERD RT+F Q+ + RD+ EFFS GKVRDVRLI +RR KG+ YIEF D SVP
Sbjct: 164 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 223
Query: 73 LAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTG-GPMRLYIGSLHFNITEDML 131
+A+ L+GQ LG P++V+P++AEKN A + + GTG +LY+G+LHFN++E L
Sbjct: 224 MAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVG--GTGPADRKLYVGNLHFNMSELQL 281
Query: 132 RGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNG-FELAGRPMKVGT 190
R IFE FG ++ +QL +DP+TG+ KG+GFI F + +K AQ LNG E+AGR +KV +
Sbjct: 282 RQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSS 341
Query: 191 VTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKL-AEGTGLELPPXXXXXXXXXX 249
V+D + P + D D+ + G+ L A R LM KL G +
Sbjct: 342 VSDHIGTQDSAPKSADFDDDDGGGLALNAQSRAMLMQKLDRSGIATSIVGSLGVPGLNGA 401
Query: 250 XXXXXXXTPQVSSSTAPPIA------------TQCFLLANMFDPATETNPTWDVEIRDDV 297
P +S P A ++C LL NMFDPATET P +D+EIRDDV
Sbjct: 402 AFNQPGMNPSFPTSVLPTTAIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLEIRDDV 461
Query: 298 IEECNKHG 305
+EC+K+G
Sbjct: 462 ADECSKYG 469
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 407 (148.3 bits), Expect = 4.7e-49, Sum P(2) = 4.7e-49
Identities = 83/191 (43%), Positives = 124/191 (64%)
Query: 6 SDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF 65
S LS EERD RT+F QL+ R+ +R+L +FF G VRD +++ + R KG+AY+EF
Sbjct: 229 SSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
Query: 66 KDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGG-PM-RLYIGSLH 123
+SV A+ L+G++LLG+P+IVQ T+AEKNR L + P RL + ++H
Sbjct: 289 CHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIH 348
Query: 124 FNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG 183
FN+T++ ++ IFEPFG I+ + L D D RSKG+G+I + + A+ A E++NGF+LAG
Sbjct: 349 FNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMNGFDLAG 407
Query: 184 RPMKVGTVTDR 194
R M+V D+
Sbjct: 408 RNMRVCLGNDK 418
Score = 125 (49.1 bits), Expect = 4.7e-49, Sum P(2) = 4.7e-49
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 262 SSTAPPIATQCFLLANMFDPATETNPTWDVEIRDDVIEECN-KHG 305
S PPI ++C LL NMF+PA ET+P W E+ DV EEC+ K+G
Sbjct: 497 SEPEPPIRSRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYG 541
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 447 (162.4 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 87/190 (45%), Positives = 128/190 (67%)
Query: 6 SDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF 65
S +L+ +ERD RTIF QL+ R+RT++L FF VG V++ +++ + R KG+ Y+EF
Sbjct: 163 SPELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEF 222
Query: 66 KDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPM-RLYIGSLHF 124
KD SV A+ L GQKLLGIPII Q T+AEKNR P RLY+G++HF
Sbjct: 223 KDESSVAPAIQLTGQKLLGIPIIAQLTEAEKNRQARNSEASSGNKHSAPFHRLYVGNIHF 282
Query: 125 NITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGR 184
+I E+ L+ +FEPFG+++ +QL D +TGRS+GYGF+ F + A++A E++NG++L GR
Sbjct: 283 SIDENDLQSVFEPFGELEFVQLQKD-ETGRSRGYGFVQFRDPNQAREALEKMNGYDLGGR 341
Query: 185 PMKVGTVTDR 194
++VG D+
Sbjct: 342 AIRVGLGNDK 351
Score = 48 (22.0 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 274 LLANMFDPATETNPTWDVEIRDDVIEECN-KHG 305
L N+ + E +W E+ DDV EC K+G
Sbjct: 458 LPVNVNMASREEGESWVKELEDDVRAECEEKYG 490
Score = 39 (18.8 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 183 GRPMKVGTVTDRNESVGG-----GPSNLDTDEMERAGVDLGATGRLQLMFKLA 230
GR ++ G T + GG G + D+ + AGV+ R LM KLA
Sbjct: 380 GRGVQAGG-TSNFDRAGGREPEKGTAASALDDTDVAGVNFNNFSRDALMRKLA 431
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 106/201 (52%), Positives = 127/201 (63%)
Query: 95 EKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGR 154
EKNR NLQ +G GGPMRLY+GSLHFNITEDMLRGIFEPFGKIDNI LM D DTGR
Sbjct: 19 EKNRLAAMANNLQ-KGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGR 77
Query: 155 SKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVGGGPSNLDTDEMERAG 214
SKGYGFITF ++ A++A EQLNGFELAGRPM+VG VT+R + GG + E
Sbjct: 78 SKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD--GGTDITFPDGDQE--- 132
Query: 215 VDLG-ATGRLQLMFKLAEGTGLELPPXXXXXXXXXXXXXXX---------XXTPQVSSST 264
+DLG A GR QLM KLAEG G++LP P ++
Sbjct: 133 LDLGSAGGRFQLMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNGAVPLGALNPAALTAL 192
Query: 265 APPI--ATQCFLLANMFDPAT 283
+P + A+QCF L+++F P T
Sbjct: 193 SPALNLASQCFQLSSLFTPQT 213
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 102/191 (53%), Positives = 123/191 (64%)
Query: 105 NLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH 164
NLQ +G GGPMRLY+GSLHFNITEDMLRGIFEPFGKIDNI LM D DTGRSKGYGFITF
Sbjct: 4 NLQ-KGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFS 62
Query: 165 SADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVGGGPSNLDTDEMERAGVDLG-ATGRL 223
++ A++A EQLNGFELAGRPM+VG VT+R + GG + E +DLG A GR
Sbjct: 63 DSECARRALEQLNGFELAGRPMRVGHVTERLD--GGTDITFPDGDQE---LDLGSAGGRF 117
Query: 224 QLMFKLAEGTGLELPPXXXXXXXXXXXXXXX---------XXTPQVSSSTAPPI--ATQC 272
QLM KLAEG G++LP P ++ +P + A+QC
Sbjct: 118 QLMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPALNLASQC 177
Query: 273 FLLANMFDPAT 283
F L+++F P T
Sbjct: 178 FQLSSLFTPQT 188
>UNIPROTKB|G3V546 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V546 SMR:G3V546 Ensembl:ENST00000557403
ArrayExpress:G3V546 Bgee:G3V546 Uniprot:G3V546
Length = 115
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 83/116 (71%), Positives = 98/116 (84%)
Query: 22 MQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQK 81
MQL+ RIR RDLE+FFS+VGKVRDVR+I+ +RR KGIAY+EF + +SVPLA+GL GQ+
Sbjct: 1 MQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQR 60
Query: 82 LLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEP 137
LLG+PIIVQ +QAEKNR NLQ +G GGPMRLY+GSLHFNITEDMLRGIFEP
Sbjct: 61 LLGVPIIVQASQAEKNRLAAMANNLQ-KGNGGPMRLYVGSLHFNITEDMLRGIFEP 115
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 369 (135.0 bits), Expect = 6.6e-38, Sum P(2) = 6.6e-38
Identities = 82/192 (42%), Positives = 117/192 (60%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSV-GKVRDVRLITCNKTRRFKGIAYIEF 65
+++ +RD T+ + L + RD+ EFFS V GKVRD++ I ++ + KG+AY+EF
Sbjct: 477 EEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEF 536
Query: 66 KDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGG-PMRLYIGSLH- 123
E+V A+ NG L PI +Q +QAEKNRA + QP P++LYIG L
Sbjct: 537 YTQEAVIKALAANGMMLKNRPIKIQSSQAEKNRAAKAAKH-QPIDPNDIPLKLYIGGLLG 595
Query: 124 --FNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
NITE L+ +F PFG I ++++ DP TG+SKG+GFI FH A +A +A +NG E+
Sbjct: 596 PLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEV 655
Query: 182 AGRPMKVGTVTD 193
AGR +KVG D
Sbjct: 656 AGREIKVGYAQD 667
Score = 73 (30.8 bits), Expect = 6.6e-38, Sum P(2) = 6.6e-38
Identities = 25/104 (24%), Positives = 45/104 (43%)
Query: 205 LDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPPXXXXXXXXXXXXXXXXXTPQVSSST 264
+D D+ + G+ G ++ LM KL + ++ P S++
Sbjct: 703 IDNDDGDGGGLIAGTGSKIALMQKLQRDSIIDPNIPSRYATGANAIMARNSFVP--STNN 760
Query: 265 APPIATQCFLLANMFDPATE---TNPTWDVEIRDDVIEECNKHG 305
T +L+NMF E ++P + +I +DV EEC+K+G
Sbjct: 761 INNNVTTNLVLSNMFSSNDENIGSDPDFFNDILEDVKEECSKYG 804
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 369 (135.0 bits), Expect = 6.6e-38, Sum P(2) = 6.6e-38
Identities = 82/192 (42%), Positives = 117/192 (60%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSV-GKVRDVRLITCNKTRRFKGIAYIEF 65
+++ +RD T+ + L + RD+ EFFS V GKVRD++ I ++ + KG+AY+EF
Sbjct: 477 EEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEF 536
Query: 66 KDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGG-PMRLYIGSLH- 123
E+V A+ NG L PI +Q +QAEKNRA + QP P++LYIG L
Sbjct: 537 YTQEAVIKALAANGMMLKNRPIKIQSSQAEKNRAAKAAKH-QPIDPNDIPLKLYIGGLLG 595
Query: 124 --FNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
NITE L+ +F PFG I ++++ DP TG+SKG+GFI FH A +A +A +NG E+
Sbjct: 596 PLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEV 655
Query: 182 AGRPMKVGTVTD 193
AGR +KVG D
Sbjct: 656 AGREIKVGYAQD 667
Score = 73 (30.8 bits), Expect = 6.6e-38, Sum P(2) = 6.6e-38
Identities = 25/104 (24%), Positives = 45/104 (43%)
Query: 205 LDTDEMERAGVDLGATGRLQLMFKLAEGTGLELPPXXXXXXXXXXXXXXXXXTPQVSSST 264
+D D+ + G+ G ++ LM KL + ++ P S++
Sbjct: 703 IDNDDGDGGGLIAGTGSKIALMQKLQRDSIIDPNIPSRYATGANAIMARNSFVP--STNN 760
Query: 265 APPIATQCFLLANMFDPATE---TNPTWDVEIRDDVIEECNKHG 305
T +L+NMF E ++P + +I +DV EEC+K+G
Sbjct: 761 INNNVTTNLVLSNMFSSNDENIGSDPDFFNDILEDVKEECSKYG 804
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 345 (126.5 bits), Expect = 8.9e-38, Sum P(2) = 8.9e-38
Identities = 76/188 (40%), Positives = 109/188 (57%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
EE D RT+F +LSQ I +DL + FS G V +VRLIT T+R KG+ Y+EF E V
Sbjct: 261 EESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQKEMV 320
Query: 72 PLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDML 131
A+ L+G L G I+V Q EK + + +GG R+Y+G +H ++ E+ +
Sbjct: 321 DKAIALSGSVLDGQQILVHSIQPEKK----VIKSNSTGSSGGESRIYVGYIHLSVAEEQI 376
Query: 132 RGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191
R IF+P+G ID I + P G SK Y FI F + + AK+A +LNG+EL G+ +K+ V
Sbjct: 377 RVIFQPYGDIDFINIHTKP--GISK-YAFIQFKTQESAKRAITELNGYELMGKNLKLNMV 433
Query: 192 TDRNESVG 199
+ S G
Sbjct: 434 SQEKNSNG 441
Score = 93 (37.8 bits), Expect = 8.9e-38, Sum P(2) = 8.9e-38
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 272 CFLLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
C +L NMFDP TET WD +I + EC+ G
Sbjct: 636 CLILRNMFDPETETEENWDQDILSETHAECSTFG 669
>UNIPROTKB|Q5QP23 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 HOVERGEN:HBG057646
TIGRFAMs:TIGR01622 UniGene:Hs.282901 HGNC:HGNC:15923
HOGENOM:HOG000236253 ChiTaRS:RBM39 IPI:IPI00647282 SMR:Q5QP23
STRING:Q5QP23 Ensembl:ENST00000374038 Uniprot:Q5QP23
Length = 231
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 65/90 (72%), Positives = 79/90 (87%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 142 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 201
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEK 96
D SVPLA+GL GQ++LG+PIIVQ +QAEK
Sbjct: 202 DVSSVPLAIGLTGQRVLGVPIIVQASQAEK 231
>UNIPROTKB|Q5QP21 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL357374
IPI:IPI00514831 UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
SMR:Q5QP21 STRING:Q5QP21 Ensembl:ENST00000427743 Uniprot:Q5QP21
Length = 202
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 59/82 (71%), Positives = 72/82 (87%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 121 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 180
Query: 67 DPESVPLAMGLNGQKLLGIPII 88
D SVPLA+GL GQ++LG+PII
Sbjct: 181 DVSSVPLAIGLTGQRVLGVPII 202
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 259 (96.2 bits), Expect = 1.2e-21, P = 1.2e-21
Identities = 72/210 (34%), Positives = 104/210 (49%)
Query: 2 RPAYSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIA 61
RPA S + + T+F +LS + + L + F G + R+I ++ R KG
Sbjct: 248 RPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYG 307
Query: 62 YIEFKDPESVPLAMGLNGQKL---------LGIPIIVQPTQAEKNRAGNTLPNL-QPRGT 111
Y++F+ PE+ A+ NG K L P P + RAGN L +P T
Sbjct: 308 YVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDT 367
Query: 112 GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKK 171
+++G+L FN TED L F G I +I+L DP +GR KG+G++TF D AKK
Sbjct: 368 -----VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
Query: 172 AQEQLNGFELAGRPMKVGTVTDRNESVGGG 201
E +NG +AGRP ++ T R GGG
Sbjct: 423 CVE-MNGHFIAGRPCRLDFSTPRT---GGG 448
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 225 (84.3 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 62/196 (31%), Positives = 96/196 (48%)
Query: 12 EERDA-RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPES 70
EE D T+F LS + L E F G V R+IT ++ R KG Y++F PE
Sbjct: 233 EESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEE 292
Query: 71 VPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTL-PNLQPRG-TGGPMR--LYIGSLHFN 125
A G G + G I V + + + + + G T P L++G+L F+
Sbjct: 293 AEKAHGEKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSPESDTLFVGNLPFD 352
Query: 126 ITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRP 185
ED + F ++ +++L + ++GR KG+G++TF+S +DAK A EQLNG + GR
Sbjct: 353 ADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGRN 412
Query: 186 MKVGTVTDRNESVGGG 201
++ T R GG
Sbjct: 413 CRLDYSTPRPPREDGG 428
>UNIPROTKB|H0YCP8 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC105219 EMBL:AC105049 HGNC:HGNC:17042 Ensembl:ENST00000532884
Uniprot:H0YCP8
Length = 273
Score = 204 (76.9 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 52/161 (32%), Positives = 88/161 (54%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV-Q 90
+ + F+ G ++ + + + T + KG A++E++ PE+ LA+ +N L G I V Q
Sbjct: 10 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVRQ 69
Query: 91 PTQAEKNRAGNTLPNLQPRGTG-GPMRLYIGS-LHFNITEDMLRGIFEPFGKIDNIQLMV 148
+A +A P +P G G L I L ++++D ++ +FE FGKI + L
Sbjct: 70 GAKASIPQACRAAPPRKPFVAGPGLTGLSISPPLPQDLSDDDIKSVFEAFGKIKSCTLAR 129
Query: 149 DPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
DP TG+ KGYGFI + A ++ A +N F+L G+ ++VG
Sbjct: 130 DPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 170
Score = 118 (46.6 bits), Expect = 0.00015, P = 0.00015
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 123 HFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA 182
++ + ED +R F PFG I +I + D T + KG+ F+ + + A+ A EQ+N L
Sbjct: 2 YYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG 61
Query: 183 GRPMKV 188
GR +KV
Sbjct: 62 GRNIKV 67
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 204 (76.9 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 49/186 (26%), Positives = 99/186 (53%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
E+ +T++ LS+ + + + FS +G ++ ++I T ++EF +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHA 59
Query: 72 PLAMG-LNGQKLLGIPIIVQ----PTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
A+ +NG+K++G + V P+ +K+ + +T+ + Q + +++G L I
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQR--SQDHFHVFVGDLSPEI 117
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
T + ++ F PFG+I + +++ D TG+SKGYGF++F + DA+ A +Q+ G L GR +
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 187 KVGTVT 192
+ T
Sbjct: 178 RTNWAT 183
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 216 (81.1 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 46/157 (29%), Positives = 85/157 (54%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92
+ + F+ G ++ + + + T + KG A++E++ PE+ LA+ +LG I
Sbjct: 127 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 186
Query: 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT 152
+ +A + L R+Y+ S+H ++++D ++ +FE FGKI + L DP T
Sbjct: 187 PSNIGQAQPIIDQLAEEARAFN-RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTT 245
Query: 153 GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
G+ KGYGFI + A ++ A +N F+L G+ ++VG
Sbjct: 246 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 282
Score = 152 (58.6 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+GS+++ + ED +R F PFG I +I + D T + KG+ F+ + + A+ A EQ
Sbjct: 112 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 171
Query: 176 LNGFELAGRPMKVG 189
+N L GR +KVG
Sbjct: 172 MNSVMLGGRNIKVG 185
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 216 (81.1 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 46/157 (29%), Positives = 85/157 (54%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92
+ + F+ G ++ + + + T + KG A++E++ PE+ LA+ +LG I
Sbjct: 108 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 167
Query: 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT 152
+ +A + L R+Y+ S+H ++++D ++ +FE FGKI + L DP T
Sbjct: 168 PSNIGQAQPIIDQLAEEARAFN-RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTT 226
Query: 153 GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
G+ KGYGFI + A ++ A +N F+L G+ ++VG
Sbjct: 227 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 263
Score = 152 (58.6 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+GS+++ + ED +R F PFG I +I + D T + KG+ F+ + + A+ A EQ
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 152
Query: 176 LNGFELAGRPMKVG 189
+N L GR +KVG
Sbjct: 153 MNSVMLGGRNIKVG 166
Score = 45 (20.9 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 274 LLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
+L NM DP D ++ +V EEC K G
Sbjct: 428 VLRNMVDPKDI-----DDDLEGEVTEECGKFG 454
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 216 (81.1 bits), Expect = 7.4e-16, P = 7.4e-16
Identities = 46/157 (29%), Positives = 85/157 (54%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92
+ + F+ G ++ + + + T + KG A++E++ PE+ LA+ +LG I
Sbjct: 143 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 202
Query: 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT 152
+ +A + L R+Y+ S+H ++++D ++ +FE FGKI + L DP T
Sbjct: 203 PSNIGQAQPIIDQLAEEARAFN-RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTT 261
Query: 153 GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
G+ KGYGFI + A ++ A +N F+L G+ ++VG
Sbjct: 262 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 298
Score = 152 (58.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+GS+++ + ED +R F PFG I +I + D T + KG+ F+ + + A+ A EQ
Sbjct: 128 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 187
Query: 176 LNGFELAGRPMKVG 189
+N L GR +KVG
Sbjct: 188 MNSVMLGGRNIKVG 201
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 216 (81.1 bits), Expect = 7.7e-16, Sum P(2) = 7.7e-16
Identities = 46/157 (29%), Positives = 85/157 (54%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92
+ + F+ G ++ + + + T + KG A++E++ PE+ LA+ +LG I
Sbjct: 116 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 175
Query: 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT 152
+ +A + L R+Y+ S+H ++++D ++ +FE FGKI + L DP T
Sbjct: 176 PSNIGQAQPIIDQLAEEARAFN-RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTT 234
Query: 153 GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
G+ KGYGFI + A ++ A +N F+L G+ ++VG
Sbjct: 235 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 271
Score = 152 (58.6 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+GS+++ + ED +R F PFG I +I + D T + KG+ F+ + + A+ A EQ
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 176 LNGFELAGRPMKVG 189
+N L GR +KVG
Sbjct: 161 MNSVMLGGRNIKVG 174
Score = 45 (20.9 bits), Expect = 7.7e-16, Sum P(2) = 7.7e-16
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 274 LLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
+L NM DP D ++ +V EEC K G
Sbjct: 436 VLRNMVDPKDI-----DDDLEGEVTEECGKFG 462
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 216 (81.1 bits), Expect = 7.7e-16, Sum P(2) = 7.7e-16
Identities = 46/157 (29%), Positives = 85/157 (54%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92
+ + F+ G ++ + + + T + KG A++E++ PE+ LA+ +LG I
Sbjct: 116 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 175
Query: 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT 152
+ +A + L R+Y+ S+H ++++D ++ +FE FGKI + L DP T
Sbjct: 176 PSNIGQAQPIIDQLAEEARAFN-RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTT 234
Query: 153 GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
G+ KGYGFI + A ++ A +N F+L G+ ++VG
Sbjct: 235 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 271
Score = 152 (58.6 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+GS+++ + ED +R F PFG I +I + D T + KG+ F+ + + A+ A EQ
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 176 LNGFELAGRPMKVG 189
+N L GR +KVG
Sbjct: 161 MNSVMLGGRNIKVG 174
Score = 45 (20.9 bits), Expect = 7.7e-16, Sum P(2) = 7.7e-16
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 274 LLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
+L NM DP D ++ +V EEC K G
Sbjct: 436 VLRNMVDPKDI-----DDDLEGEVTEECGKFG 462
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 216 (81.1 bits), Expect = 8.6e-16, Sum P(2) = 8.6e-16
Identities = 46/157 (29%), Positives = 85/157 (54%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92
+ + F+ G ++ + + + T + KG A++E++ PE+ LA+ +LG I
Sbjct: 129 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 188
Query: 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT 152
+ +A + L R+Y+ S+H ++++D ++ +FE FGKI + L DP T
Sbjct: 189 PSNIGQAQPIIDQLAEEARAFN-RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTT 247
Query: 153 GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
G+ KGYGFI + A ++ A +N F+L G+ ++VG
Sbjct: 248 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 284
Score = 152 (58.6 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+GS+++ + ED +R F PFG I +I + D T + KG+ F+ + + A+ A EQ
Sbjct: 114 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 173
Query: 176 LNGFELAGRPMKVG 189
+N L GR +KVG
Sbjct: 174 MNSVMLGGRNIKVG 187
Score = 45 (20.9 bits), Expect = 8.6e-16, Sum P(2) = 8.6e-16
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 274 LLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
+L NM DP D ++ +V EEC K G
Sbjct: 449 VLRNMVDPKDI-----DDDLEGEVTEECGKFG 475
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 222 (83.2 bits), Expect = 8.8e-16, P = 8.8e-16
Identities = 62/203 (30%), Positives = 99/203 (48%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
+P ++T+F LS I D+E FF G+V DVR T F+G ++EF E
Sbjct: 290 TPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSE 349
Query: 70 SVPLAMGLNGQKLLG--IPIIVQPTQAEKNRAGNTLP---NLQPRGTGGP-MRLYIGSLH 123
A+ +G+ LLG I + + + E+ P N + G GG ++++
Sbjct: 350 EAQKALEFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFD 409
Query: 124 FNITED----MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGF 179
+++ED LR F G+I N+ + +D DTG SKG ++ F ++ +KA E LNG
Sbjct: 410 ASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF--SEGKEKALE-LNGS 466
Query: 180 ELAGR-PMKVGTVTDRNESVGGG 201
++ G + V R +S GGG
Sbjct: 467 DMGGGFYLVVDEPRPRGDSSGGG 489
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 216 (81.1 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
Identities = 46/157 (29%), Positives = 85/157 (54%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92
+ + F+ G ++ + + + T + KG A++E++ PE+ LA+ +LG I
Sbjct: 145 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 204
Query: 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT 152
+ +A + L R+Y+ S+H ++++D ++ +FE FGKI + L DP T
Sbjct: 205 PSNIGQAQPIIDQLAEEARAFN-RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTT 263
Query: 153 GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
G+ KGYGFI + A ++ A +N F+L G+ ++VG
Sbjct: 264 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 300
Score = 152 (58.6 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+GS+++ + ED +R F PFG I +I + D T + KG+ F+ + + A+ A EQ
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query: 176 LNGFELAGRPMKVG 189
+N L GR +KVG
Sbjct: 190 MNSVMLGGRNIKVG 203
Score = 45 (20.9 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 274 LLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
+L NM DP D ++ +V EEC K G
Sbjct: 465 VLRNMVDPKDI-----DDDLEGEVTEECGKFG 491
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 216 (81.1 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
Identities = 46/157 (29%), Positives = 85/157 (54%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92
+ + F+ G ++ + + + T + KG A++E++ PE+ LA+ +LG I
Sbjct: 146 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 205
Query: 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT 152
+ +A + L R+Y+ S+H ++++D ++ +FE FGKI + L DP T
Sbjct: 206 PSNIGQAQPIIDQLAEEARAFN-RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTT 264
Query: 153 GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
G+ KGYGFI + A ++ A +N F+L G+ ++VG
Sbjct: 265 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 301
Score = 152 (58.6 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+GS+++ + ED +R F PFG I +I + D T + KG+ F+ + + A+ A EQ
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 190
Query: 176 LNGFELAGRPMKVG 189
+N L GR +KVG
Sbjct: 191 MNSVMLGGRNIKVG 204
Score = 45 (20.9 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 274 LLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
+L NM DP D ++ +V EEC K G
Sbjct: 466 VLRNMVDPKDI-----DDDLEGEVTEECGKFG 492
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 216 (81.1 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 46/157 (29%), Positives = 85/157 (54%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92
+ + F+ G ++ + + + T + KG A++E++ PE+ LA+ +LG I
Sbjct: 150 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 209
Query: 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT 152
+ +A + L R+Y+ S+H ++++D ++ +FE FGKI + L DP T
Sbjct: 210 PSNIGQAQPIIDQLAEEARAFN-RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTT 268
Query: 153 GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
G+ KGYGFI + A ++ A +N F+L G+ ++VG
Sbjct: 269 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 305
Score = 152 (58.6 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+GS+++ + ED +R F PFG I +I + D T + KG+ F+ + + A+ A EQ
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 176 LNGFELAGRPMKVG 189
+N L GR +KVG
Sbjct: 195 MNSVMLGGRNIKVG 208
Score = 45 (20.9 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 274 LLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
+L NM DP D ++ +V EEC K G
Sbjct: 470 VLRNMVDPKDI-----DDDLEGEVTEECGKFG 496
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 216 (81.1 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 46/157 (29%), Positives = 85/157 (54%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92
+ + F+ G ++ + + + T + KG A++E++ PE+ LA+ +LG I
Sbjct: 150 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 209
Query: 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT 152
+ +A + L R+Y+ S+H ++++D ++ +FE FGKI + L DP T
Sbjct: 210 PSNIGQAQPIIDQLAEEARAFN-RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTT 268
Query: 153 GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
G+ KGYGFI + A ++ A +N F+L G+ ++VG
Sbjct: 269 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 305
Score = 152 (58.6 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+GS+++ + ED +R F PFG I +I + D T + KG+ F+ + + A+ A EQ
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 176 LNGFELAGRPMKVG 189
+N L GR +KVG
Sbjct: 195 MNSVMLGGRNIKVG 208
Score = 45 (20.9 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 274 LLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
+L NM DP D ++ +V EEC K G
Sbjct: 470 VLRNMVDPKDI-----DDDLEGEVTEECGKFG 496
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 216 (81.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 46/157 (29%), Positives = 85/157 (54%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92
+ + F+ G ++ + + + T + KG A++E++ PE+ LA+ +LG I
Sbjct: 102 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 161
Query: 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT 152
+ +A + L R+Y+ S+H ++++D ++ +FE FGKI + L DP T
Sbjct: 162 PSNIGQAQPIIDQLAEEARAFN-RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTT 220
Query: 153 GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
G+ KGYGFI + A ++ A +N F+L G+ ++VG
Sbjct: 221 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 257
Score = 152 (58.6 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+GS+++ + ED +R F PFG I +I + D T + KG+ F+ + + A+ A EQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 176 LNGFELAGRPMKVG 189
+N L GR +KVG
Sbjct: 147 MNSVMLGGRNIKVG 160
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 220 (82.5 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 61/208 (29%), Positives = 102/208 (49%)
Query: 4 AYSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYI 63
A S EE + +F LS + L + F G++ R++T T R +G Y+
Sbjct: 264 AASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGEL-SARIMTERDTGRSRGFGYV 322
Query: 64 EFK---DPESVPLAMG---LNGQKLLGIPIIVQPTQAE----KNRAGNTLPNLQPRGTGG 113
EF D AM ++G+K+ +P + K RA N + + +
Sbjct: 323 EFTNAADAAKAYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPE 382
Query: 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173
L++G+L F+ ED + +F P G + I+L D ++GR KG+G++ + S D+A+KA
Sbjct: 383 SDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAY 442
Query: 174 EQLNGFELAGRPMKVGTVTDRNESVGGG 201
+L G E+ GRP+++ T R + GGG
Sbjct: 443 NELQGAEIDGRPIRLDFSTPRANNGGGG 470
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 214 (80.4 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 46/157 (29%), Positives = 85/157 (54%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92
+ + F+ G ++ + + + T + KG A++E++ PE+ LA+ +LG I
Sbjct: 109 IRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 168
Query: 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT 152
+ +A + L R+Y+ S+H ++++D ++ +FE FG+I + L DP T
Sbjct: 169 PSNIGQAQPIIDQLAEEARAFN-RIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTT 227
Query: 153 GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
G+ KGYGFI + A A+ A +N F+L G+ ++VG
Sbjct: 228 GKHKGYGFIEYDKAQSAQDAVSSMNLFDLGGQYLRVG 264
Score = 151 (58.2 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+GS+++ + ED +R F PFG I +I + D T + KG+ F+ + + A+ A EQ
Sbjct: 94 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQ 153
Query: 176 LNGFELAGRPMKVG 189
+N L GR +KVG
Sbjct: 154 MNSVMLGGRNIKVG 167
Score = 40 (19.1 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 290 DVEIRDDVIEECNKHG 305
D ++ +V EEC K G
Sbjct: 455 DDDLEGEVTEECGKFG 470
Score = 37 (18.1 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 16/72 (22%), Positives = 25/72 (34%)
Query: 217 LGATGRLQLMFKLAEGTGLELPPXXXXXXXXXXXXXXXXXTPQVSSSTAPPIATQCFLLA 276
L A ++ + GTGL +P TP + A P+ Q L+
Sbjct: 319 LEAVAGASILGAMTAGTGLSMPQLPQAVMAAQAPGVITGVTP---ARPAMPVVPQVGLV- 374
Query: 277 NMFDPATETNPT 288
+P + PT
Sbjct: 375 ---NPVLSSPPT 383
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 216 (81.1 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 46/157 (29%), Positives = 85/157 (54%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92
+ + F+ G ++ + + + T + KG A++E++ PE+ LA+ +LG I
Sbjct: 37 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 96
Query: 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT 152
+ +A + L R+Y+ S+H ++++D ++ +FE FGKI + L DP T
Sbjct: 97 PSNIGQAQPIIDQLAEEARAFN-RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTT 155
Query: 153 GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
G+ KGYGFI + A ++ A +N F+L G+ ++VG
Sbjct: 156 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 192
Score = 152 (58.6 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+GS+++ + ED +R F PFG I +I + D T + KG+ F+ + + A+ A EQ
Sbjct: 22 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 81
Query: 176 LNGFELAGRPMKVG 189
+N L GR +KVG
Sbjct: 82 MNSVMLGGRNIKVG 95
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 205 (77.2 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 51/182 (28%), Positives = 95/182 (52%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
E+ +T++ LS+ + + + FS +G ++ ++I T ++EF +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHA 59
Query: 72 PLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDM 130
A+ +NG+K++G + V N A T P+ Q + T +++G L IT +
Sbjct: 60 AAALAAMNGRKIMGKEVKV-------NWA--TTPSSQKKDTSNHFHVFVGDLSPEITTED 110
Query: 131 LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190
++ F PFG+I + +++ D TG+SKGYGF++F + DA+ A +Q+ G L GR ++
Sbjct: 111 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 170
Query: 191 VT 192
T
Sbjct: 171 AT 172
Score = 128 (50.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 43/153 (28%), Positives = 71/153 (46%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF--K-DPESVPLAM 75
+F LS I T D++ F+ G++ D R++ T + KG ++ F K D E+ M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT--LPNLQPRGTGGPMR--LYIGSLHFNITE 128
G L G+++ +P + NT L + P +Y G + +TE
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 216
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFI 161
++R F PFG+I +++ V PD KGY F+
Sbjct: 217 QLMRQTFSPFGQI--MEIRVFPD----KGYSFV 243
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 211 (79.3 bits), Expect = 3.5e-15, P = 3.5e-15
Identities = 56/182 (30%), Positives = 94/182 (51%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
+E RT++ LS+ + + + FS +G + ++I T ++EF +
Sbjct: 4 DEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMIL--DTTGNDPYCFVEFYENRHA 61
Query: 72 PLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDM 130
A+ +NG+K+LG + V N A P+ Q + T +++G L I+ D
Sbjct: 62 AAALAAMNGRKILGKDMKV-------NWAST--PSSQKKDTSNHFHVFVGDLSPEISTDD 112
Query: 131 LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190
+R F PFGKI + +++ D TG+SKGYGFI+F + DA+ A +Q+NG L GR ++
Sbjct: 113 VRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNW 172
Query: 191 VT 192
T
Sbjct: 173 AT 174
Score = 155 (59.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 53/201 (26%), Positives = 93/201 (46%)
Query: 1 MRPAYSDDLSPEERDART---IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRF 57
M+ ++ S +++D +F LS I T D+ F+ GK+ D R++ T +
Sbjct: 78 MKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKS 137
Query: 58 KGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV-----QPTQAEKNRAGNTLPNL---QP 108
KG +I F + A+ +NGQ L G I +P+ + N G + +L +
Sbjct: 138 KGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEV 197
Query: 109 RGTGGPMR--LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSA 166
P +Y G + +++ ++R F PFG+I +++ V P+ KGY F+ F S
Sbjct: 198 LNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQI--MEIRVFPE----KGYSFVRFDSH 251
Query: 167 DDAKKAQEQLNGFELAGRPMK 187
+ A A +NG + G +K
Sbjct: 252 EGAAHAIVSVNGTCIEGHTVK 272
>UNIPROTKB|Q5QP22 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL357374
UniGene:Hs.282901 HGNC:HGNC:15923 HOGENOM:HOG000236253
ChiTaRS:RBM39 IPI:IPI00644764 SMR:Q5QP22 STRING:Q5QP22
Ensembl:ENST00000434927 Uniprot:Q5QP22
Length = 193
Score = 195 (73.7 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 37/50 (74%), Positives = 45/50 (90%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRR 56
D+L+PEERDART+FCMQL+ RIR RDLEEFFS+VGKVRDVR+I+ +RR
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 202 (76.2 bits), Expect = 4.8e-15, P = 4.8e-15
Identities = 50/177 (28%), Positives = 93/177 (52%)
Query: 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG 76
+T++ LS+ + + + FS +G ++ ++I T ++EF + A+
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHAAAALA 60
Query: 77 -LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIF 135
+NG+K++G + V N A T P+ Q + T +++G L IT + ++ F
Sbjct: 61 AMNGRKIMGKEVKV-------NWA--TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF 111
Query: 136 EPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192
PFG+I + +++ D TG+SKGYGF++F + DA+ A +Q+ G L GR ++ T
Sbjct: 112 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 168
Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 43/153 (28%), Positives = 72/153 (47%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF--K-DPESVPLAM 75
+F LS I T D++ F+ G++ D R++ T + KG ++ F K D E+ M
Sbjct: 93 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 152
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLHFNITE 128
G L G+++ +P + NT + + + G +Y G + +TE
Sbjct: 153 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTE 212
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFI 161
++R F PFG+I +++ V PD KGY FI
Sbjct: 213 QLMRQTFSPFGQI--MEIRVFPD----KGYSFI 239
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 217 (81.4 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 63/195 (32%), Positives = 95/195 (48%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
+ERDART+F L I DL E F + D+R + T +GIAYIEFK
Sbjct: 375 KERDARTLFVKNLPYSITQDDLREIFD---QAVDIR-VPMGNTGTSRGIAYIEFKTEAIA 430
Query: 72 PLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMR-LYIGSLHFNITED 129
A+ G + G IIV T +K+R G RG + L + +L F+ +ED
Sbjct: 431 EKALEEAQGSDVQGRSIIVDFT-GDKSRQGG-------RGAPSASKVLVVNNLAFSASED 482
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
L+ +FE + + + + GR KGY F+ F + +D+K+A E N ++ GR +++
Sbjct: 483 SLQSVFEKA-----VSIRIPQNNGRPKGYAFVEFENVEDSKEALENCNNTDIEGRSIRLE 537
Query: 190 TVTDRNESVGGGPSN 204
+ E GGG N
Sbjct: 538 YSQNDRERGGGGRGN 552
Score = 185 (70.2 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 58/174 (33%), Positives = 97/174 (55%)
Query: 33 LEEFFSSVG-KVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQP 91
+ +FFS G +++DVRL T++F Y++F E + A+ LNG+KLLG QP
Sbjct: 310 ISKFFSKEGLEIQDVRL---GGTKKF---GYVDFASEEELQKALELNGKKLLG-----QP 358
Query: 92 TQAEKNRAG-NTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDP 150
+ +K R+ N+ N + R L++ +L ++IT+D LR IF+ +D I++ +
Sbjct: 359 VKLDKARSKENSQENKKERDA---RTLFVKNLPYSITQDDLREIFDQ--AVD-IRVPMG- 411
Query: 151 DTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVG-GGPS 203
+TG S+G +I F + A+KA E+ G ++ GR + V D++ G G PS
Sbjct: 412 NTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGDKSRQGGRGAPS 465
Score = 155 (59.6 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 44/148 (29%), Positives = 74/148 (50%)
Query: 56 RFKGIAYIEFKDPESVPLAM-GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGP 114
R KG A++EF++ E A+ N + G I ++ +Q ++ R G RG GP
Sbjct: 502 RPKGYAFVEFENVEDSKEALENCNNTDIEGRSIRLEYSQNDRERGGGG------RGNSGP 555
Query: 115 MR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173
+ L++ L + T+ L+ F+ G I ++ D DTG SKG+GF+ F + D K A+
Sbjct: 556 TKTLFVKGLSDDTTDQTLKDSFD--GAIA-ARIATDRDTGSSKGFGFVDFDNEQDCKAAK 612
Query: 174 EQLNGFELAGRPMKVGTVTDRNESVGGG 201
E ++ E+ G + + + E GG
Sbjct: 613 EAMDDGEIDGNKVTLDYAKPKGEGGRGG 640
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 212 (79.7 bits), Expect = 5.5e-15, P = 5.5e-15
Identities = 53/191 (27%), Positives = 96/191 (50%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG- 76
T+F +LS I L+ F +G V R+I T + +G Y++F+ + A+
Sbjct: 169 TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEE 228
Query: 77 LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTG-GPMR--LYIGSLHFNITEDMLRG 133
+ G+++ G PI + + + + + + + G P L+IG+L FN D L
Sbjct: 229 MQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFN 288
Query: 134 IFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193
+F +G + + ++ PDT + KG+G++ F S D+AK A E +NG + GRP ++ T
Sbjct: 289 VFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFSTP 348
Query: 194 RNESVGGGPSN 204
R+ + +N
Sbjct: 349 RDNTNNNNNNN 359
Score = 152 (58.6 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 33/105 (31%), Positives = 61/105 (58%)
Query: 93 QAEKNRAGNTLP--NLQPRG-TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVD 149
+AE+++ + P +P T P L++G L +NI + L+ FE G + +++++
Sbjct: 143 KAEESKEEESAPVKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIME 202
Query: 150 PDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194
TG+S+GYG++ F S A+KA E++ G E+ GRP+ + T +
Sbjct: 203 RATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGK 247
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 212 (79.7 bits), Expect = 5.5e-15, P = 5.5e-15
Identities = 53/191 (27%), Positives = 96/191 (50%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG- 76
T+F +LS I L+ F +G V R+I T + +G Y++F+ + A+
Sbjct: 169 TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEE 228
Query: 77 LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTG-GPMR--LYIGSLHFNITEDMLRG 133
+ G+++ G PI + + + + + + + G P L+IG+L FN D L
Sbjct: 229 MQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFN 288
Query: 134 IFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193
+F +G + + ++ PDT + KG+G++ F S D+AK A E +NG + GRP ++ T
Sbjct: 289 VFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFSTP 348
Query: 194 RNESVGGGPSN 204
R+ + +N
Sbjct: 349 RDNTNNNNNNN 359
Score = 152 (58.6 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 33/105 (31%), Positives = 61/105 (58%)
Query: 93 QAEKNRAGNTLP--NLQPRG-TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVD 149
+AE+++ + P +P T P L++G L +NI + L+ FE G + +++++
Sbjct: 143 KAEESKEEESAPVKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIME 202
Query: 150 PDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194
TG+S+GYG++ F S A+KA E++ G E+ GRP+ + T +
Sbjct: 203 RATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGK 247
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 207 (77.9 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 52/182 (28%), Positives = 95/182 (52%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
++ RT++ LS+ + + + FS +G + ++IT + + ++EF +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDA 61
Query: 72 PLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDM 130
A+ +NG+K+LG + V N A T P+ Q + T +++G L IT +
Sbjct: 62 AAALAAMNGRKILGKEVKV-------NWA--TTPSSQKKDTSNHFHVFVGDLSPEITTED 112
Query: 131 LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190
++ F PFGKI + +++ D TG+SKGYGF++F++ DA+ A + G L GR ++
Sbjct: 113 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 172
Query: 191 VT 192
T
Sbjct: 173 AT 174
Score = 157 (60.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 46/179 (25%), Positives = 85/179 (47%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK---DPESVPLAM 75
+F LS I T D++ F+ GK+ D R++ T + KG ++ F D E+ + M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLHFNITE 128
G L G+++ +P + + NT ++ + + +Y G + +T+
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 218
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V P+ KGY F+ F + + A A +NG + G +K
Sbjct: 219 QLMRQTFSPFGQI--MEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 271
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 207 (77.9 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 52/182 (28%), Positives = 95/182 (52%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
++ RT++ LS+ + + + FS +G + ++IT + + ++EF +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDA 61
Query: 72 PLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDM 130
A+ +NG+K+LG + V N A T P+ Q + T +++G L IT +
Sbjct: 62 AAALAAMNGRKILGKEVKV-------NWA--TTPSSQKKDTSNHFHVFVGDLSPEITTED 112
Query: 131 LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190
++ F PFGKI + +++ D TG+SKGYGF++F++ DA+ A + G L GR ++
Sbjct: 113 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 172
Query: 191 VT 192
T
Sbjct: 173 AT 174
Score = 157 (60.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 46/179 (25%), Positives = 85/179 (47%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK---DPESVPLAM 75
+F LS I T D++ F+ GK+ D R++ T + KG ++ F D E+ + M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLHFNITE 128
G L G+++ +P + + NT ++ + + +Y G + +T+
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 218
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V P+ KGY F+ F + + A A +NG + G +K
Sbjct: 219 QLMRQTFSPFGQI--MEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 271
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 205 (77.2 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 51/182 (28%), Positives = 95/182 (52%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
E+ +T++ LS+ + + + FS +G ++ ++I T ++EF +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHA 59
Query: 72 PLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDM 130
A+ +NG+K++G + V N A T P+ Q + T +++G L IT +
Sbjct: 60 AAALAAMNGRKIMGKEVKV-------NWA--TTPSSQKKDTSNHFHVFVGDLSPEITTED 110
Query: 131 LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190
++ F PFG+I + +++ D TG+SKGYGF++F + DA+ A +Q+ G L GR ++
Sbjct: 111 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 170
Query: 191 VT 192
T
Sbjct: 171 AT 172
Score = 165 (63.1 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 51/179 (28%), Positives = 84/179 (46%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF--K-DPESVPLAM 75
+F LS I T D++ F+ G++ D R++ T + KG ++ F K D E+ M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLHFNITE 128
G L G+++ +P + NT + + + G +Y G + +TE
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTE 216
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V PD KGY FI F S + A A +NG + G +K
Sbjct: 217 QLMRQTFSPFGQI--MEIRVFPD----KGYSFIRFSSHESAAHAIVSVNGTTIEGHVVK 269
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 204 (76.9 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 49/186 (26%), Positives = 99/186 (53%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
E+ +T++ LS+ + + + FS +G ++ ++I T ++EF +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHA 59
Query: 72 PLAMG-LNGQKLLGIPIIVQ----PTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
A+ +NG+K++G + V P+ +K+ + +T+ + Q + +++G L I
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQR--SQDHFHVFVGDLSPEI 117
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
T + ++ F PFG+I + +++ D TG+SKGYGF++F + DA+ A +Q+ G L GR +
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 187 KVGTVT 192
+ T
Sbjct: 178 RTNWAT 183
Score = 160 (61.4 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 51/179 (28%), Positives = 84/179 (46%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF--K-DPESVPLAM 75
+F LS I T D++ F+ G++ D R++ T + KG ++ F K D E+ M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT--LPNLQPRGTGGPMR--LYIGSLHFNITE 128
G L G+++ +P + NT L + P +Y G + +TE
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V PD KGY F+ F+S + A A +NG + G +K
Sbjct: 228 QLMRQTFSPFGQI--MEIRVFPD----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 204 (76.9 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 49/186 (26%), Positives = 99/186 (53%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
E+ +T++ LS+ + + + FS +G ++ ++I T ++EF +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHA 59
Query: 72 PLAMG-LNGQKLLGIPIIVQ----PTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
A+ +NG+K++G + V P+ +K+ + +T+ + Q + +++G L I
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQR--SQDHFHVFVGDLSPEI 117
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
T + ++ F PFG+I + +++ D TG+SKGYGF++F + DA+ A +Q+ G L GR +
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 187 KVGTVT 192
+ T
Sbjct: 178 RTNWAT 183
Score = 160 (61.4 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 51/179 (28%), Positives = 84/179 (46%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF--K-DPESVPLAM 75
+F LS I T D++ F+ G++ D R++ T + KG ++ F K D E+ M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT--LPNLQPRGTGGPMR--LYIGSLHFNITE 128
G L G+++ +P + NT L + P +Y G + +TE
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V PD KGY F+ F+S + A A +NG + G +K
Sbjct: 228 QLMRQTFSPFGQI--MEIRVFPD----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 204 (76.9 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 49/186 (26%), Positives = 99/186 (53%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
E+ +T++ LS+ + + + FS +G ++ ++I T ++EF +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHA 59
Query: 72 PLAMG-LNGQKLLGIPIIVQ----PTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
A+ +NG+K++G + V P+ +K+ + +T+ + Q + +++G L I
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQR--SQDHFHVFVGDLSPEI 117
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
T + ++ F PFG+I + +++ D TG+SKGYGF++F + DA+ A +Q+ G L GR +
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 187 KVGTVT 192
+ T
Sbjct: 178 RTNWAT 183
Score = 158 (60.7 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 49/179 (27%), Positives = 83/179 (46%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF--K-DPESVPLAM 75
+F LS I T D++ F+ G++ D R++ T + KG ++ F K D E+ M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLHFNITE 128
G L G+++ +P + NT + + + +Y G + +TE
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTE 227
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V PD KGY F+ F S + A A +NG + G +K
Sbjct: 228 QLMRQTFSPFGQI--MEIRVFPD----KGYSFVRFSSHESAAHAIVSVNGTTIEGHVVK 280
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 203 (76.5 bits), Expect = 5.0e-14, P = 5.0e-14
Identities = 51/182 (28%), Positives = 95/182 (52%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
E+ +T++ LS+ + + + FS +G ++ ++I T ++EF +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFYEHRHA 59
Query: 72 PLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDM 130
A+ +NG+K++G + V N A T P+ Q + T +++G L IT +
Sbjct: 60 ASALAAMNGRKIMGKEVKV-------NWA--TTPSSQKKDTSNHFHVFVGDLSPEITTED 110
Query: 131 LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190
++ F PFG+I + +++ D TG+SKGYGF++F + DA+ A +Q+ G L GR ++
Sbjct: 111 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 170
Query: 191 VT 192
T
Sbjct: 171 AT 172
Score = 160 (61.4 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 49/179 (27%), Positives = 85/179 (47%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF--K-DPESVPLAM 75
+F LS I T D++ F+ G++ D R++ T + KG ++ F K D E+ M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLHFNITE 128
G L G+++ +P + NT ++ + + +Y G + +TE
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTE 216
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V PD KGY F+ F+S + A A +NG + G +K
Sbjct: 217 QLMRQTFSPFGQI--MEIRVFPD----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 269
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 203 (76.5 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 49/186 (26%), Positives = 99/186 (53%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
E+ +T++ LS+ + + + FS +G ++ ++I T ++EF +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFYEHRHA 59
Query: 72 PLAMG-LNGQKLLGIPIIVQ----PTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
A+ +NG+K++G + V P+ +K+ + +T+ + Q + +++G L I
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQR--SQDHFHVFVGDLSPEI 117
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
T + ++ F PFG+I + +++ D TG+SKGYGF++F + DA+ A +Q+ G L GR +
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 187 KVGTVT 192
+ T
Sbjct: 178 RTNWAT 183
Score = 160 (61.4 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 51/179 (28%), Positives = 84/179 (46%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF--K-DPESVPLAM 75
+F LS I T D++ F+ G++ D R++ T + KG ++ F K D E+ M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT--LPNLQPRGTGGPMR--LYIGSLHFNITE 128
G L G+++ +P + NT L + P +Y G + +TE
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V PD KGY F+ F+S + A A +NG + G +K
Sbjct: 228 QLMRQTFSPFGQI--MEIRVFPD----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 203 (76.5 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 50/182 (27%), Positives = 93/182 (51%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
++ +T++ LS+ + + + F +G + ++I T ++EF +
Sbjct: 3 DDEQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIV--DTAGNDPYCFVEFFEHRHA 60
Query: 72 PLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDM 130
++ +NG+K++G + V N A T P+ Q + T +++G L IT D
Sbjct: 61 AASLAAMNGRKIMGKEVKV-------NWA--TSPSSQKKDTSNHFHVFVGDLSPEITTDD 111
Query: 131 LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190
+R F PFG+I + +++ D TG+SKGYGF++F + DA+ A +Q+ G L GR ++
Sbjct: 112 IRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 171
Query: 191 VT 192
T
Sbjct: 172 AT 173
Score = 155 (59.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 50/179 (27%), Positives = 83/179 (46%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF--K-DPESVPLAM 75
+F LS I T D+ F+ G++ D R++ T + KG ++ F K D E+ M
Sbjct: 98 VFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 157
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLHFNITE 128
G L G+++ +P + NT + + + +Y G + +TE
Sbjct: 158 GGQWLGGRQIRTNWATRKPPAPKATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTE 217
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V PD KGY F+ F+S + A A +NG L G +K
Sbjct: 218 QLMRQTFSPFGQI--MEVRVFPD----KGYSFVRFNSHESAAHAIVSVNGTSLEGHIVK 270
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 203 (76.5 bits), Expect = 6.1e-14, P = 6.1e-14
Identities = 49/186 (26%), Positives = 99/186 (53%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
E+ +T++ LS+ + + + FS +G ++ ++I T ++EF +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFYEHRHA 59
Query: 72 PLAMG-LNGQKLLGIPIIVQ----PTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
A+ +NG+K++G + V P+ +K+ + +T+ + Q + +++G L I
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQR--SQDHFHVFVGDLSPEI 117
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
T + ++ F PFG+I + +++ D TG+SKGYGF++F + DA+ A +Q+ G L GR +
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 187 KVGTVT 192
+ T
Sbjct: 178 RTNWAT 183
Score = 160 (61.4 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 51/179 (28%), Positives = 84/179 (46%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF--K-DPESVPLAM 75
+F LS I T D++ F+ G++ D R++ T + KG ++ F K D E+ M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT--LPNLQPRGTGGPMR--LYIGSLHFNITE 128
G L G+++ +P + NT L + P +Y G + +TE
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V PD KGY F+ F+S + A A +NG + G +K
Sbjct: 228 QLMRQTFSPFGQI--MEIRVFPD----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 200 (75.5 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 43/157 (27%), Positives = 82/157 (52%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92
+ + F+ G ++ + + + T + KG A++E++ PE+ LA+ +LG I
Sbjct: 102 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 161
Query: 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT 152
+A + L R+Y+ S+H ++++D ++ +FE FGKI + L +P T
Sbjct: 162 PGSIGQAQPIIEQLAEEARAYN-RIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTT 220
Query: 153 GRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
G+ KG+GFI + + A +N F+L G+ ++VG
Sbjct: 221 GKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVG 257
Score = 152 (58.6 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+GS+++ + ED +R F PFG I +I + D T + KG+ F+ + + A+ A EQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 176 LNGFELAGRPMKVG 189
+N L GR +KVG
Sbjct: 147 MNSVMLGGRNIKVG 160
Score = 45 (20.9 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 290 DVEIRDDVIEECNKHG 305
D ++ +V+EEC K+G
Sbjct: 433 DDDLEGEVMEECGKYG 448
>WB|WBGene00004389 [details] [associations]
symbol:rnp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007413 "axonal fasciculation" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0018991 GO:GO:0040010 GO:GO:0007411 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0007413 GO:GO:0040020
GO:GO:0040022 HSSP:Q9V535 EMBL:FO081580
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
InterPro:IPR006532 TIGRFAMs:TIGR01645 KO:K12838 GeneID:171922
KEGG:cel:CELE_Y47G6A.20 UCSC:Y47G6A.20b CTD:171922 NextBio:873257
RefSeq:NP_491176.1 ProteinModelPortal:Q9N3S4 SMR:Q9N3S4
STRING:Q9N3S4 PRIDE:Q9N3S4 EnsemblMetazoa:Y47G6A.20b
WormBase:Y47G6A.20b InParanoid:Q9N3S4 OMA:RFFGGNT
ArrayExpress:Q9N3S4 Uniprot:Q9N3S4
Length = 749
Score = 198 (74.8 bits), Expect = 9.0e-14, Sum P(3) = 9.0e-14
Identities = 57/193 (29%), Positives = 95/193 (49%)
Query: 5 YSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIE 64
YS LS R I+ +S IR L F G ++ + + T K A++E
Sbjct: 94 YSQALSIMSR----IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVE 149
Query: 65 FKDPESVPLAM-GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQP------RGTGGPMRL 117
++ PE+ LA +NGQ L G + V ++ R +P QP + R+
Sbjct: 150 YEVPEAALLAQESMNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRV 209
Query: 118 YIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRS-KGYGFITFHSADDAKKAQEQL 176
Y+ S+H +++E L+ +FE FG+I QL P TGR +G+G++ F++ +A +
Sbjct: 210 YVSSVHPDLSETDLKSVFEAFGEIVKCQLARAP-TGRGHRGFGYLEFNNLTSQSEAIAGM 268
Query: 177 NGFELAGRPMKVG 189
N F+L G+ ++VG
Sbjct: 269 NMFDLGGQYLRVG 281
Score = 175 (66.7 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 34/76 (44%), Positives = 48/76 (63%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+GS+ F I EDMLR F+PFG I +I + DP TG K + F+ + + A AQE
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 176 LNGFELAGRPMKVGTV 191
+NG L GR +KV ++
Sbjct: 163 MNGQMLGGRNLKVNSM 178
Score = 51 (23.0 bits), Expect = 9.0e-14, Sum P(3) = 9.0e-14
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 168 DAKKAQEQLNGFELAGRPMKVGTVTD--RNESVGGGPSNLDTDEMERAGVDL-GATGRLQ 224
+ KK Q +LN + K G ++D +NE + ++L + E G+++ G R
Sbjct: 591 EGKKIQPKLNTAQALAAAAKAGEMSDALKNEVMNSEDASLASQE----GLEIRGNDARHL 646
Query: 225 LMFKL 229
LM KL
Sbjct: 647 LMTKL 651
Score = 37 (18.1 bits), Expect = 9.0e-14, Sum P(3) = 9.0e-14
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 274 LLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
+L NM P + + + EIR EEC K+G
Sbjct: 661 VLRNMVTPQ-DIDEFLEGEIR----EECGKYG 687
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 201 (75.8 bits), Expect = 9.7e-14, P = 9.7e-14
Identities = 48/181 (26%), Positives = 97/181 (53%)
Query: 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG 76
+T++ LS+ + + + FS +G ++ ++I T ++EF + A+
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHAAAALA 60
Query: 77 -LNGQKLLGIPIIVQ----PTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDML 131
+NG+K++G + V P+ +K+ + +T+ + Q + +++G L IT + +
Sbjct: 61 AMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQR--SQDHFHVFVGDLSPEITTEDI 118
Query: 132 RGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191
+ F PFG+I + +++ D TG+SKGYGF++F + DA+ A +Q+ G L GR ++
Sbjct: 119 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 178
Query: 192 T 192
T
Sbjct: 179 T 179
Score = 165 (63.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 51/179 (28%), Positives = 84/179 (46%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF--K-DPESVPLAM 75
+F LS I T D++ F+ G++ D R++ T + KG ++ F K D E+ M
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLHFNITE 128
G L G+++ +P + NT + + + G +Y G + +TE
Sbjct: 164 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTE 223
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V PD KGY FI F S + A A +NG + G +K
Sbjct: 224 QLMRQTFSPFGQI--MEIRVFPD----KGYSFIRFSSHESAAHAIVSVNGTTIEGHVVK 276
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 196 (74.1 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 49/172 (28%), Positives = 82/172 (47%)
Query: 3 PAYSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAY 62
P S + + D +F LS + L ++FS G++R+ ++ T+R +G +
Sbjct: 7 PGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGF 66
Query: 63 IEFKDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSL 122
+ F DP SV +G +L I P A RA QP+ ++++G L
Sbjct: 67 VTFADPASVDKVLGQPHHELDSKTI--DPKVAFPRRA-------QPKMVTRTKKIFVGGL 117
Query: 123 HFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
N + ++ FE FGK+++ LM D T R +G+GF+TF + D +K E
Sbjct: 118 SANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 201 (75.8 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 58/189 (30%), Positives = 91/189 (48%)
Query: 16 ARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM 75
++T+F LS +I D+E FF G+V DVRL + + FKG +IEF PE A+
Sbjct: 383 SKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGS-FKGYGHIEFASPEEAQKAL 441
Query: 76 GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMR-LYIGSLHFNITEDM---- 130
+NG+ LLG + + E+ N+ P +G G R +Y+ ++ ED
Sbjct: 442 EMNGKLLLGRDVRLDLAN-ERGTPRNSNPGR--KGEGSQSRTIYVRGFSSSLGEDEIKKE 498
Query: 131 LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190
LR F G++ + + D +TG S+G+ +I S D QL+G E+ G + V
Sbjct: 499 LRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFDEAL---QLSGSEIGGGNIHVEE 555
Query: 191 VTDRNESVG 199
R+ G
Sbjct: 556 SRPRDSDEG 564
Score = 123 (48.4 bits), Expect = 0.00018, P = 0.00018
Identities = 34/115 (29%), Positives = 56/115 (48%)
Query: 89 VQPTQAEKNRAGNTLPNLQPRGT-GGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLM 147
V+ AE+ ++ P T GG L+ G+L + I + F+ G++ +++L
Sbjct: 358 VEMVDAEQ-KSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLS 416
Query: 148 VDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVGGGP 202
D G KGYG I F S ++A+KA E +NG L GR +++ +R P
Sbjct: 417 -SFDDGSFKGYGHIEFASPEEAQKALE-MNGKLLLGRDVRLDLANERGTPRNSNP 469
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 196 (74.1 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 37/93 (39%), Positives = 59/93 (63%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+YIGS+++N+TED +R IF FG++ + LM + DTG+ KG+GF+ F A A
Sbjct: 770 RIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSADDAIAT 829
Query: 176 LNGFELAGRPMKVGTVTDRNESVGGGPSNLDTD 208
+NGFEL GR +KVG T + + ++++ +
Sbjct: 830 MNGFELLGRSIKVGRPTKSSNNNNNNNNSINNN 862
Score = 171 (65.3 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 104 PNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITF 163
P L + R+Y+GSLHF++TED++R F FG I ++ L D +G+SKGY FI +
Sbjct: 577 PTLNQSTSQDQSRIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDA-SGKSKGYAFIEY 635
Query: 164 HSADDAKKAQEQLNGFELAGRPMKV 188
+ + A KA + + + + GR +KV
Sbjct: 636 DNQESAAKALQSMTNYVMCGRAIKV 660
Score = 48 (22.0 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 30 TRD-LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM 75
T D + FS G ++ + L + + + KG A+IE+ + ES A+
Sbjct: 600 TEDVIRATFSVFGNIKSLALGK-DASGKSKGYAFIEYDNQESAAKAL 645
Score = 42 (19.8 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 260 VSSSTAPPIATQCFLLANMFDPATETNPTWDVEIRDDVIEECNKHG 305
+ S T P ++C +L N P D DD+ CN+ G
Sbjct: 938 LGSDTTQP--SRCLVLKNAGSP-----DDIDSSFEDDIRSGCNEFG 976
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 185 (70.2 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 52/195 (26%), Positives = 96/195 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L++ F G V+++T +++ + KG ++ F+
Sbjct: 15 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKGFGFVSFER 73
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG++L G I V Q + R Q R T + LY+ +
Sbjct: 74 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 133
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 134 LDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 191
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 192 ATKPLYVALAQRKEE 206
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 200 (75.5 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 59/198 (29%), Positives = 100/198 (50%)
Query: 1 MRPAYSD-DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKG 59
+R YS D S A IF L + I + L + FSS G + + + + + + KG
Sbjct: 107 IRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK-VAVDSSGQSKG 165
Query: 60 IAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLY 118
++++ + ES A+ LNG L + V P + R ++ N + + T +Y
Sbjct: 166 YGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQER--DSTAN-KTKFTN----VY 218
Query: 119 IGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNG 178
+ +L + T+D L+ F +GKI + +M D + G+SKG+GF+ F +ADDA +A E LNG
Sbjct: 219 VKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNG 277
Query: 179 FELAGRPMKVGTVTDRNE 196
+ + VG ++E
Sbjct: 278 HKFDDKEWYVGRAQKKSE 295
Score = 182 (69.1 bits), Expect = 4.6e-11, P = 4.6e-11
Identities = 55/194 (28%), Positives = 93/194 (47%)
Query: 3 PAYSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAY 62
PA S + + +++ L + L + F +G V VR+ TRR G Y
Sbjct: 22 PATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGY 81
Query: 63 IEFKDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSL 122
+ F +P+ A+ Q+L IP+ +P + + P+++ G G ++I +L
Sbjct: 82 VNFTNPQDAARAI----QELNYIPLYGKPIRVMYSHRD---PSVRRSGAGN---IFIKNL 131
Query: 123 HFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELA 182
+I L F FG I + ++ VD +G+SKGYGF+ + + + A+KA E+LNG L
Sbjct: 132 DESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLN 190
Query: 183 GRPMKVGTVTDRNE 196
+ + VG R E
Sbjct: 191 DKQVYVGPFLRRQE 204
Score = 168 (64.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 48/184 (26%), Positives = 88/184 (47%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GL 77
++ L++ DL+ F GK+ ++ + + KG ++ F++ + A+ L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSA-VVMKDGEGKSKGFGFVNFENADDAARAVESL 275
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTL----PNLQPRGTG-GPMRLYIGSLHFNITEDMLR 132
NG K V Q + R NL+ LY+ +L +I+++ L+
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 335
Query: 133 GIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192
IF PFG + + ++M DP+ G SKG GF+ F + ++A +A QL+G + +P+ V +
Sbjct: 336 EIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVA-IA 393
Query: 193 DRNE 196
R E
Sbjct: 394 QRKE 397
Score = 144 (55.7 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 33/94 (35%), Positives = 52/94 (55%)
Query: 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172
G LY+G L FN+T+ L F G + +++ D T RS GYG++ F + DA +A
Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 173 QEQLNGFELAGRPMKVGTVTDRNESVG-GGPSNL 205
++LN L G+P++V + R+ SV G N+
Sbjct: 94 IQELNYIPLYGKPIRV-MYSHRDPSVRRSGAGNI 126
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 177 (67.4 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 42/127 (33%), Positives = 71/127 (55%)
Query: 62 YIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIG 120
++EF + A+ +NG+K+LG + V N A T P+ Q + T +++G
Sbjct: 13 FVEFYEHRDAAAALAAMNGRKILGKEVKV-------NWA--TTPSSQKKDTSNHFHVFVG 63
Query: 121 SLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE 180
L IT + ++ F PFGKI + +++ D TG+SKGYGF++F++ DA+ A + G
Sbjct: 64 DLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQW 123
Query: 181 LAGRPMK 187
L GR ++
Sbjct: 124 LGGRQIR 130
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 177 (67.4 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 34/90 (37%), Positives = 57/90 (63%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
++Y+GSL +++T D L+ F +G+I+ +L++D +TGRSKG+ FIT+ + D A++A +
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 176 LNGFELAGRPMKVGTVT----DRNESVGGG 201
NG +L GR ++V DR G G
Sbjct: 79 ANGIDLQGRKIRVNIARENTGDRRRDGGSG 108
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 177 (67.4 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 34/90 (37%), Positives = 57/90 (63%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
++Y+GSL +++T D L+ F +G+I+ +L++D +TGRSKG+ FIT+ + D A++A +
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 176 LNGFELAGRPMKVGTVT----DRNESVGGG 201
NG +L GR ++V DR G G
Sbjct: 79 ANGIDLQGRKIRVNIARENTGDRRRDGGSG 108
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 193 (73.0 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 52/203 (25%), Positives = 99/203 (48%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGL- 77
++ L I + +L + F G V DV+++ T R +G ++ E AM +
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 78 NGQKLLGIPIIVQ-PT--QAEKNRAGNTLPNLQPRG-TGGPMRLYIGSLHFNITEDMLRG 133
N ++ G + V P + +N T R P ++Y G+L +N+T L+
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKD 237
Query: 134 IFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193
F + +++ + +TGRS+G+GFI+F SA++ + A +NG E+ GR +++ ++
Sbjct: 238 AFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASE 297
Query: 194 RNESVGGGPSNLDTDEMERAGVD 216
R + PS ++ E E A ++
Sbjct: 298 REKPTVSPPS-VEEGETEEASLE 319
Score = 157 (60.3 bits), Expect = 8.3e-09, P = 8.3e-09
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 109 RGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADD 168
+ +G RLY+G+L + IT L IF G + ++Q++ D T RS+G+GF+T S ++
Sbjct: 110 QASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEE 169
Query: 169 AKKAQEQLNGFELAGRPMKV 188
AK+A + N ++ GR +KV
Sbjct: 170 AKEAMQMFNSSQIGGRTVKV 189
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 196 (74.1 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 56/197 (28%), Positives = 104/197 (52%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
E + TIF +LS I L++ F +G V R+I T R +G Y++F++
Sbjct: 163 ETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYA 222
Query: 72 PLAMG-LNGQKLLGIPIIVQPTQAE----KNRA---GNTLPNLQPRGTGGPMRLYIGSLH 123
A+ + G+++ G PI + ++ +RA G+T P+ +P T L++G+L
Sbjct: 223 EKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDT-PS-EPSDT-----LFLGNLS 275
Query: 124 FNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG 183
FN D + +F G++ ++++ P+T + KG+G++ F + +DAKKA + L G +
Sbjct: 276 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDN 335
Query: 184 RPMKVGTVTDRNESVGG 200
RP+++ + R + GG
Sbjct: 336 RPVRLDFSSPRPNNDGG 352
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 197 (74.4 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 52/204 (25%), Positives = 92/204 (45%)
Query: 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVP 72
E + R ++ L R+ L + F + G V++V++I +K + ++E+ DP +
Sbjct: 81 EPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIP-DKNAKGYNYGFVEYDDPGAAD 139
Query: 73 LAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDML 131
AM LNG++ V ++ N A + T +++G L + +++L
Sbjct: 140 RAMQTLNGRR-------VHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVL 192
Query: 132 RGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191
F FG + ++M D TGRS+GYGF+ F DA+KA ++G L R ++
Sbjct: 193 TQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWA 252
Query: 192 TDRNESVGGGPSNLDTDEMERAGV 215
+ G PS M G+
Sbjct: 253 NQK-----GQPSIAQQQAMSAVGM 271
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 184 (69.8 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 48/181 (26%), Positives = 85/181 (46%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
L P ++ L + + L + V ++ T + +G A++ +
Sbjct: 77 LDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNV 136
Query: 69 ESVPLAM-GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
E + + L+G + LG + V N A PN +P +L++G+L + +T
Sbjct: 137 EDCNIIIDNLDGTEYLGRALKV-------NFADKPKPNKEPLYPETEHKLFVGNLSWTVT 189
Query: 128 EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
+ L G F G + +++ D DTGRS+GYGF+ + S + + A E L+GFEL GR ++
Sbjct: 190 SESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIR 249
Query: 188 V 188
V
Sbjct: 250 V 250
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 194 (73.4 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 49/179 (27%), Positives = 100/179 (55%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L 77
+F L + I + L E FS+ GK+ ++++ ++ KG A++ F++ + A+ +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGS--KGYAFVHFQNQSAADRAIEEM 157
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEP 137
NG+ L G + V + K+R L+ + + +YI + ++ ++ L+ +F
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAE----LRSKASEFT-NVYIKNFGGDMDDERLKDVFSK 212
Query: 138 FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
+GK ++++M D +G+SKG+GF++F S + AKKA E++NG ++ G+ + VG + E
Sbjct: 213 YGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVE 270
Score = 192 (72.6 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 52/163 (31%), Positives = 86/163 (52%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L++ FS GK V+++T + + + KG ++ F E+ A+ +NG+ + G I V
Sbjct: 206 LKDVFSKYGKTLSVKVMT-DSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGR 264
Query: 92 TQ------AEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQ 145
Q AE + L + RG G ++LYI +L I ++ LR F FG I ++
Sbjct: 265 AQKKVERQAELKQMFEQLKRERIRGCQG-VKLYIKNLDDTIDDEKLRNEFSSFGSISRVK 323
Query: 146 LMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188
+M + G+SKG+G I F S +DA KA ++NG L +P+ +
Sbjct: 324 VM--QEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSI 364
Score = 134 (52.2 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 50/161 (31%), Positives = 76/161 (47%)
Query: 37 FSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAE 95
FS+VG V +R+ TRR G AY+ F A+ +N + G I + +Q +
Sbjct: 30 FSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRD 89
Query: 96 KNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRS 155
L+ G G ++I +L +I L F FGKI + ++M D D G S
Sbjct: 90 AY--------LRRSGIGN---VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-S 136
Query: 156 KGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
KGY F+ F + A +A E++NG L G + VG +R +
Sbjct: 137 KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKD 177
Score = 121 (47.7 bits), Expect = 0.00013, P = 0.00013
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
LY+G LH ++TED+L F G + +I++ D T RS GY ++ F DA+KA + +
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 177 NGFELAGRPMKV 188
N + G+ +++
Sbjct: 72 NFDIIKGKSIRL 83
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 198 (74.8 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 63/239 (26%), Positives = 115/239 (48%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L + ++ ++ + + +L+E FS GK V+++ + + + KG ++ ++
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR-DPSGKSKGFGFVSYEK 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQ------AEKNRAGNTLPNLQPRGTGGPMRLYIG 120
E A+ +NG+++ G I V Q AE R L + G + LYI
Sbjct: 241 HEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG-VNLYIK 299
Query: 121 SLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE 180
+L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG
Sbjct: 300 NLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 181 LAGRPMKVGTVTDRNESVGGGPSNLDTDEMER-AGVDLGATGRLQLMFKLAEGTGLELP 238
+ +P+ V + E ++L M+R AG+ + F+ A G G +P
Sbjct: 358 VGSKPLYVALAQRKEER----KAHLTNQYMQRVAGMRALPANAILNQFQPAAG-GYFVP 411
Score = 192 (72.6 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 52/190 (27%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + +F L + I + L + FS+ G + +++ C++ KG A++ F+
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYAFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L T +YI + +
Sbjct: 148 QEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE-LGAKAKEFTN----VYIKNFGEEV 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FGK ++++M DP +G+SKG+GF+++ +DA KA E++NG E+ G+ +
Sbjct: 203 DDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 FVGRAQKKVE 271
Score = 167 (63.8 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 53/165 (32%), Positives = 80/165 (48%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G V +R+ TRR G AY+ F+ P A+ +N + G PI +
Sbjct: 27 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGY F+ F + + A KA E++NG L R + VG R E
Sbjct: 135 NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 135 (52.6 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 114 PMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172
PM LY+G LH ++TE ML F P G + +I++ D T RS GY ++ F DA++A
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 173 QEQLNGFELAGRPMKV 188
+ +N + G+P+++
Sbjct: 69 LDTMNFDVIKGKPIRI 84
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 191 (72.3 bits), Expect = 8.3e-13, P = 8.3e-13
Identities = 48/169 (28%), Positives = 81/169 (47%)
Query: 6 SDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF 65
S + + D +F LS + L ++FS G++R+ ++ T+R +G ++ F
Sbjct: 10 SGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69
Query: 66 KDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFN 125
DP SV +G +L I P A RA QP+ ++++G L N
Sbjct: 70 ADPASVDKVLGQPHHELDSKTI--DPKVAFPRRA-------QPKMVTRTKKIFVGGLSAN 120
Query: 126 ITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
+ ++ FE FGK+++ LM D T R +G+GF+TF + D +K E
Sbjct: 121 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 197 (74.4 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 65/239 (27%), Positives = 113/239 (47%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L + ++ ++ + L+E FS GK V+++T + T + KG ++ F+
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMT-DPTGKSKGFGFVSFEK 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQ------AEKNRAGNTLPNLQPRGTGGPMRLYIG 120
E A+ +NG+ + G + V Q AE R L + G + LYI
Sbjct: 241 HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQG-VNLYIK 299
Query: 121 SLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE 180
+L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG
Sbjct: 300 NLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 181 LAGRPMKVGTVTDRNESVGGGPSNLDTDEMER-AGVDLGATGRLQLMFKLAEGTGLELP 238
+ +P+ V + E ++L M+R AG+ + F+ A G G +P
Sbjct: 358 VGSKPLYVALAQRKEER----KAHLTNQYMQRIAGMRALPANTIINQFQPAAG-GYFMP 411
Score = 191 (72.3 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 51/190 (26%), Positives = 98/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + +F L + I + L + FS+ G + +++ C++ KG A++ F+
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYAFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
++ A+ +NG L + V ++ K R L T +YI + ++
Sbjct: 148 QDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAE-LGAKAKEFTN----VYIKNFGDDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F +GK ++++M DP TG+SKG+GF++F +DA KA E++NG ++ G+ +
Sbjct: 203 DDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMV 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 FVGRAQKKVE 271
Score = 168 (64.2 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 53/165 (32%), Positives = 80/165 (48%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G V +R+ TRR G AY+ F+ P A+ +N + G PI +
Sbjct: 27 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGY F+ F + D A +A E++NG L R + VG R E
Sbjct: 135 NG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 137 (53.3 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 110 GTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADD 168
G+ PM LY+G LH ++TE ML F P G + +I++ D T RS GY ++ F D
Sbjct: 5 GSSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 169 AKKAQEQLNGFELAGRPMKV 188
A++A + +N + G+P+++
Sbjct: 65 AERALDTMNFDVIKGKPIRI 84
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 197 (74.4 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 63/239 (26%), Positives = 115/239 (48%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L + ++ ++ + + +L+E FS GK V+++ + + + KG ++ ++
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR-DPSGKSKGFGFVSYEK 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQ------AEKNRAGNTLPNLQPRGTGGPMRLYIG 120
E A+ +NG+++ G I V Q AE R L + G + LYI
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG-VNLYIK 299
Query: 121 SLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE 180
+L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG
Sbjct: 300 NLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 181 LAGRPMKVGTVTDRNESVGGGPSNLDTDEMER-AGVDLGATGRLQLMFKLAEGTGLELP 238
+ +P+ V + E ++L M+R AG+ + F+ A G G +P
Sbjct: 358 VGSKPLYVALAQRKEER----KAHLTNQYMQRVAGMRALPANAILNQFQPAAG-GYFVP 411
Score = 193 (73.0 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + +F L + I + L + FS+ G + +++ C++ KG A++ F+
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYAFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L T +YI + +
Sbjct: 148 QEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE-LGAKAKEFTN----VYIKNFGEEV 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FGK ++++M DP +G+SKG+GF+++ +DA KA E++NG E++G+ +
Sbjct: 203 DDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 FVGRAQKKVE 271
Score = 167 (63.8 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 53/165 (32%), Positives = 80/165 (48%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G V +R+ TRR G AY+ F+ P A+ +N + G PI +
Sbjct: 27 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGY F+ F + + A KA E++NG L R + VG R E
Sbjct: 135 NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 135 (52.6 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 114 PMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172
PM LY+G LH ++TE ML F P G + +I++ D T RS GY ++ F DA++A
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 173 QEQLNGFELAGRPMKV 188
+ +N + G+P+++
Sbjct: 69 LDTMNFDVIKGKPIRI 84
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 194 (73.4 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 49/179 (27%), Positives = 100/179 (55%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L 77
+F L + I + L E FS+ GK+ ++++ ++ KG A++ F++ + A+ +
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGS--KGYAFVHFQNQSAADRAIEEM 215
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEP 137
NG+ L G + V + K+R L+ + + +YI + ++ ++ L+ +F
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAE----LRSKASEFT-NVYIKNFGGDMDDERLKDVFSK 270
Query: 138 FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
+GK ++++M D +G+SKG+GF++F S + AKKA E++NG ++ G+ + VG + E
Sbjct: 271 YGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVE 328
Score = 192 (72.6 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 52/163 (31%), Positives = 86/163 (52%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L++ FS GK V+++T + + + KG ++ F E+ A+ +NG+ + G I V
Sbjct: 264 LKDVFSKYGKTLSVKVMT-DSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGR 322
Query: 92 TQ------AEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQ 145
Q AE + L + RG G ++LYI +L I ++ LR F FG I ++
Sbjct: 323 AQKKVERQAELKQMFEQLKRERIRGCQG-VKLYIKNLDDTIDDEKLRNEFSSFGSISRVK 381
Query: 146 LMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188
+M + G+SKG+G I F S +DA KA ++NG L +P+ +
Sbjct: 382 VM--QEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSI 422
Score = 134 (52.2 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 50/161 (31%), Positives = 76/161 (47%)
Query: 37 FSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAE 95
FS+VG V +R+ TRR G AY+ F A+ +N + G I + +Q +
Sbjct: 88 FSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRD 147
Query: 96 KNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRS 155
L+ G G ++I +L +I L F FGKI + ++M D D G S
Sbjct: 148 AY--------LRRSGIGN---VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-S 194
Query: 156 KGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
KGY F+ F + A +A E++NG L G + VG +R +
Sbjct: 195 KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKD 235
Score = 121 (47.7 bits), Expect = 0.00016, P = 0.00016
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
LY+G LH ++TED+L F G + +I++ D T RS GY ++ F DA+KA + +
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 177 NGFELAGRPMKV 188
N + G+ +++
Sbjct: 130 NFDIIKGKSIRL 141
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 199 (75.1 bits), Expect = 9.5e-13, P = 9.5e-13
Identities = 59/204 (28%), Positives = 92/204 (45%)
Query: 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP-ESV 71
ERD +F L DLE FS GKV +++ K + G ++ F P ES
Sbjct: 105 ERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSY-GYGFVRFSSPQESA 163
Query: 72 PLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDML 131
L+G + ++ R N NL + L+I L +++T+D L
Sbjct: 164 AAIEELDGYQYQNKKLLC--------RLSNLYTNLNSKYPSN--NLFIKPLPYDVTDDQL 213
Query: 132 RGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL---AGRPMKV 188
R +FEPFGKI ++M+D + G+SK GF+ F S DA KA + +NG + +G P+ V
Sbjct: 214 RKLFEPFGKIIECKVMLDHN-GQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVV 272
Query: 189 GTVTDRNESVGGGPSNLDTDEMER 212
+ + + T E+
Sbjct: 273 KYADTEQQKISRKQRKMQTIYQEK 296
Score = 164 (62.8 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 30/88 (34%), Positives = 55/88 (62%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
L++ L + + L +F FGK+ +++++ D DTG +KGYGF+ F+ D+A K Q+++
Sbjct: 771 LFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKEM 830
Query: 177 NGFELAGRPMKVGTVTDRNESVGGGPSN 204
NGF + + +KV + + ES+ G S+
Sbjct: 831 NGFRIGSKFLKV-KLKNEKESMNSGKSH 857
Score = 118 (46.6 bits), Expect = 0.00099, P = 0.00099
Identities = 23/90 (25%), Positives = 48/90 (53%)
Query: 97 NRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSK 156
N N++ N + +++ L + ++ L +F +GK+ + ++M+DP G S
Sbjct: 91 NNNNNSVNNKELELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPK-GNSY 149
Query: 157 GYGFITFHSADDAKKAQEQLNGFELAGRPM 186
GYGF+ F S ++ A E+L+G++ + +
Sbjct: 150 GYGFVRFSSPQESAAAIEELDGYQYQNKKL 179
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 196 (74.1 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 56/190 (29%), Positives = 92/190 (48%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S ++ + IF L I + L + FS G + ++ T ++ + KG ++ F++
Sbjct: 117 DPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIAT-DENGKSKGFGFVHFEE 175
Query: 68 PESVPLAM-GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
+ A+ LNG L G I V P + K R + L + T LY+ +++
Sbjct: 176 EGAAKEAIDALNGMLLNGQEIYVAPHLSRKER-DSQLEETKAHYTN----LYVKNINSET 230
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
T++ + +F FG I + L D D G+ KG+GF+ + +DA KA E LN EL G +
Sbjct: 231 TDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKL 289
Query: 187 KVGTVTDRNE 196
VG +NE
Sbjct: 290 YVGRAQKKNE 299
Score = 169 (64.5 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 52/185 (28%), Positives = 88/185 (47%)
Query: 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVP 72
E + +++ L + L + FS +G V +R+ T+ G AY+ F D E+
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93
Query: 73 LAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDML 131
A+ LN + G + +Q + P+L+ +G+G ++I +LH +I L
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRD--------PSLRKKGSGN---IFIKNLHPDIDNKAL 142
Query: 132 RGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191
F FG I + ++ D + G+SKG+GF+ F AK+A + LNG L G+ + V
Sbjct: 143 YDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPH 201
Query: 192 TDRNE 196
R E
Sbjct: 202 LSRKE 206
Score = 143 (55.4 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 46/198 (23%), Positives = 90/198 (45%)
Query: 8 DLSPEERDAR--TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF 65
D EE A ++ ++ +E F+ G + L + + KG ++ +
Sbjct: 208 DSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEK-DADGKLKGFGFVNY 266
Query: 66 -KDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPN------LQPRGTGGPMRLY 118
K ++V LN +L G + V Q +KN + L L+ + L+
Sbjct: 267 EKHEDAVKAVEALNDSELNGEKLYVGRAQ-KKNERMHVLKKQYEAYRLEKMAKYQGVNLF 325
Query: 119 IGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNG 178
+ +L ++ ++ L F P+G I + ++M + G+SKG+GF+ F + ++A KA + N
Sbjct: 326 VKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEKNQ 384
Query: 179 FELAGRPMKVGTVTDRNE 196
+AG+P+ V + R +
Sbjct: 385 QIVAGKPLYVA-IAQRKD 401
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 191 (72.3 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 52/190 (27%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + S+ G + ++ C++ KG ++ F+
Sbjct: 90 DPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVV-CDENGS-KGYGFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L G + V ++ K R L R P +YI + ++
Sbjct: 148 HEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE----LGARAKEFP-NVYIKNFGEDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FG ++++M D ++G+SKG+GF++F +DA+KA +++NG EL G+ +
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 YVGRAQKKVE 271
Score = 156 (60.0 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 45/168 (26%), Positives = 84/168 (50%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L++ F G V+++T +++ + KG ++ F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGN---TLPNL-QPRGTGGPM-RLYIGS 121
E A+ +NG++L G I V Q + R T + Q R T + LY+ +
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDA 169
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A
Sbjct: 301 LDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346
Score = 140 (54.3 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 45/165 (27%), Positives = 78/165 (47%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ T AY+ F+ + A+ +N + G P+ +
Sbjct: 27 LYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G +++ +L +I L FG I + ++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGYGF+ F + + A++A +++NG L GR + VG R E
Sbjct: 135 NG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKE 178
Score = 123 (48.4 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
LY+G LH ++TE ML F P G I +I++ D T S Y ++ F DA+ A + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 177 NGFELAGRPMKVGTVTDRNESVG-GGPSNLDTDEMERA 213
N + G+P+++ + R+ S+ G N+ ++++
Sbjct: 73 NFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFVKNLDKS 109
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 192 (72.6 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 55/199 (27%), Positives = 99/199 (49%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLIT--CNKTRRFK----GIA---- 61
+E +T++ LS+ + + + F+ +G + ++IT + +R+ G +
Sbjct: 3 DESHPKTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDSSRKMNSSSIGFSVLQH 62
Query: 62 -------YIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGG 113
++EF + A+ +NG+K+LG + V N A T P+ Q + T
Sbjct: 63 TSNDPYCFVEFFEHRDAAAALAAMNGRKILGKEVKV-------NWA--TTPSSQKKDTSN 113
Query: 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173
+++G L IT D +R F PFGKI + +++ D TG+SKGYGF++F++ DA+ A
Sbjct: 114 HFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAI 173
Query: 174 EQLNGFELAGRPMKVGTVT 192
+ G L GR ++ T
Sbjct: 174 VHMGGQWLGGRQIRTNWAT 192
Score = 160 (61.4 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 54/181 (29%), Positives = 83/181 (45%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK---DPESVPLAM 75
+F LS I T D+ F+ GK+ D R++ T + KG ++ F D E+ + M
Sbjct: 117 VFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 176
Query: 76 GLNGQKLLGIPI----IVQPTQAEKNRAGNTLPNL---QPRGTGGPMR--LYIGSLHFNI 126
G GQ L G I + A K+ N+ L + P +Y G + +
Sbjct: 177 G--GQWLGGRQIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGL 234
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TE ++R F PFG+I +++ V P+ KGY FI F S + A A +NG + G +
Sbjct: 235 TEHLMRQTFSPFGQI--MEIRVFPE----KGYSFIRFSSHESAAHAIVSVNGTTIEGHVV 288
Query: 187 K 187
K
Sbjct: 289 K 289
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 193 (73.0 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 51/191 (26%), Positives = 90/191 (47%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
+ D +TI+ L Q + L FS G+V V++I +T + + ++EF
Sbjct: 76 IQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTH 135
Query: 69 ESVPLAM-GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
+ + NG + P QP + N AG + + TG +++G L ++T
Sbjct: 136 AAAEKVLQSYNGTMM---PNTEQPFRL--NWAGFSTGEKRAE-TGSDFSIFVGDLASDVT 189
Query: 128 EDMLRGIFEP-FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
+ MLR F + + +++VD +TG SKGYGF+ F + +A ++NG + R M
Sbjct: 190 DTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAM 249
Query: 187 KVGTVTDRNES 197
++G T + S
Sbjct: 250 RIGVATPKKPS 260
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 196 (74.1 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 54/195 (27%), Positives = 97/195 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ R+ + L F G+V V+++T ++ + KG ++ F+
Sbjct: 182 ELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMT-DEGGKSKGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG++L G I V P Q + +R Q RG + LY+ +
Sbjct: 241 HEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ L+ F PFG I + ++M + GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 301 LDDGIDDERLQKEFSPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMNGRIV 358
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 359 ATKPLYVALAQRKEE 373
Score = 185 (70.2 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 49/172 (28%), Positives = 93/172 (54%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L 77
+F L++ I + L + FS+ G + +++ C++ KG ++ F+ E+ A+ +
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVV-CDENGS-KGHGFVHFETEEAAERAIEKM 158
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEP 137
NG L + V ++ K R L R T +YI + + + L G+F
Sbjct: 159 NGMLLNDRKVFVGQFKSRKEREAE----LGTR-TKEFTNVYIKNFGDRMDDKTLNGLFGR 213
Query: 138 FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
FG++ ++++M D + G+SKG+GF++F +DA+KA +++NG EL G+ + VG
Sbjct: 214 FGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVG 264
Score = 160 (61.4 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 50/165 (30%), Positives = 82/165 (49%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FSS G + +R+ TRR G A + F+ P A+ +N + G P+ +
Sbjct: 27 LYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTMNFDVIKGKPVRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L+ I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRRSGVGN---VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKG+GF+ F + + A++A E++NG L R + VG R E
Sbjct: 135 NG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKE 178
Score = 124 (48.7 bits), Expect = 0.00014, P = 0.00014
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 112 GGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAK 170
G PM LY+G LH ++TE ML F G I +I++ D T RS GY + F DA+
Sbjct: 7 GCPMASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAE 66
Query: 171 KAQEQLNGFELAGRPMKV 188
+A + +N + G+P+++
Sbjct: 67 RALDTMNFDVIKGKPVRI 84
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 196 (74.1 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 63/239 (26%), Positives = 114/239 (47%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L + ++ ++ + + L+E FS GK V+++ + + + KG ++ ++
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPSGKSKGFGFVSYEK 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQ------AEKNRAGNTLPNLQPRGTGGPMRLYIG 120
E A+ +NG+++ G I V Q AE R L + G + LYI
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG-VNLYIK 299
Query: 121 SLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE 180
+L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG
Sbjct: 300 NLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 181 LAGRPMKVGTVTDRNESVGGGPSNLDTDEMER-AGVDLGATGRLQLMFKLAEGTGLELP 238
+ +P+ V + E ++L M+R AG+ + F+ A G G +P
Sbjct: 358 VGSKPLYVALAQRKEER----KAHLTNQYMQRVAGMRALPANAILNQFQPAAG-GYFVP 411
Score = 194 (73.4 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + +F L + I + L + FS+ G + +++ C++ KG A++ F+
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYAFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L T +YI + +
Sbjct: 148 QEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE-LGAKAKEFTN----VYIKNFGEEV 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FGK ++++M DP +G+SKG+GF+++ +DA KA E++NG E++G+ +
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 FVGRAQKKVE 271
Score = 167 (63.8 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 53/165 (32%), Positives = 80/165 (48%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G V +R+ TRR G AY+ F+ P A+ +N + G PI +
Sbjct: 27 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGY F+ F + + A KA E++NG L R + VG R E
Sbjct: 135 NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 135 (52.6 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 114 PMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172
PM LY+G LH ++TE ML F P G + +I++ D T RS GY ++ F DA++A
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 173 QEQLNGFELAGRPMKV 188
+ +N + G+P+++
Sbjct: 69 LDTMNFDVIKGKPIRI 84
>TAIR|locus:2825067 [details] [associations]
symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
OMA:MENEERV Uniprot:F4I0X0
Length = 438
Score = 143 (55.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 33/98 (33%), Positives = 55/98 (56%)
Query: 100 GNTLPN-LQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGY 158
G ++P+ LQ G G L+I ++ + L F+PFGK+ + ++ VD TG SK +
Sbjct: 324 GTSIPSSLQTEGPAGA-NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCF 382
Query: 159 GFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
GFI++ S A+ A +NG +L+G+ +KV D +
Sbjct: 383 GFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKRDNGQ 420
Score = 95 (38.5 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 22/93 (23%), Positives = 47/93 (50%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GL 77
+F L + + +++ FS G ++D++++ + KG +++++ E AM L
Sbjct: 111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILR-GSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 78 NGQKLL---GIPIIVQPTQAEKNRAGNTLPNLQ 107
NG+ ++ +P+IV+ EK R L +Q
Sbjct: 170 NGRHIMEGANVPLIVKWADTEKERQARRLLKVQ 202
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 195 (73.7 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 63/239 (26%), Positives = 114/239 (47%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L + ++ ++ + + +L E FS GK V+++ + + + KG ++ ++
Sbjct: 111 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMR-DCSGKSKGFGFVSYEK 169
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQ------AEKNRAGNTLPNLQPRGTGGPMRLYIG 120
E A+ +NG+++ G I V Q AE R L + G + LYI
Sbjct: 170 HEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQG-VNLYIK 228
Query: 121 SLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE 180
+L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG
Sbjct: 229 NLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 286
Query: 181 LAGRPMKVGTVTDRNESVGGGPSNLDTDEMER-AGVDLGATGRLQLMFKLAEGTGLELP 238
+ +P+ V + E ++L M+R AG+ + F+ A G G +P
Sbjct: 287 VGSKPLYVALAQRKEER----KAHLTNQYMQRVAGMRALPANAILNQFQPAAG-GYFVP 340
Score = 186 (70.5 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 52/190 (27%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + +F L + I + L + FS+ G + +++ C++ KG A++ F+
Sbjct: 19 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYAFVHFET 76
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L T +YI + +
Sbjct: 77 QEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAE-LGAKAKEFTN----VYIKNFGEEV 131
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ LR +F FGK ++++M D +G+SKG+GF+++ +DA KA E++NG E++G+ +
Sbjct: 132 DDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 190
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 191 FVGRAQKKVE 200
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 196 (74.1 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 63/239 (26%), Positives = 114/239 (47%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L + ++ ++ + + L+E FS GK V+++ + + + KG ++ ++
Sbjct: 222 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPSGKSKGFGFVSYEK 280
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQ------AEKNRAGNTLPNLQPRGTGGPMRLYIG 120
E A+ +NG+++ G I V Q AE R L + G + LYI
Sbjct: 281 HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG-VNLYIK 339
Query: 121 SLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE 180
+L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG
Sbjct: 340 NLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 397
Query: 181 LAGRPMKVGTVTDRNESVGGGPSNLDTDEMER-AGVDLGATGRLQLMFKLAEGTGLELP 238
+ +P+ V + E ++L M+R AG+ + F+ A G G +P
Sbjct: 398 VGSKPLYVALAQRKEER----KAHLTNQYMQRVAGMRALPANAILNQFQPAAG-GYFVP 451
Score = 194 (73.4 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + +F L + I + L + FS+ G + +++ C++ KG A++ F+
Sbjct: 130 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYAFVHFET 187
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L T +YI + +
Sbjct: 188 QEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE-LGAKAKEFTN----VYIKNFGEEV 242
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FGK ++++M DP +G+SKG+GF+++ +DA KA E++NG E++G+ +
Sbjct: 243 DDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 301
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 302 FVGRAQKKVE 311
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 195 (73.7 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 51/179 (28%), Positives = 92/179 (51%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L 77
+F L I + L + FS+ G + +++ C+ +G ++ F+ E+ A+ +
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVV-CDD-HGSRGFGFVHFETHEAAQNAIRTM 158
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEP 137
NG L + V ++ + R L R +Y+ +LH ++ E L+ +F
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAE----LGARALEFT-NIYVKNLHVDVDERCLQDLFSQ 213
Query: 138 FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FGKI ++++M D D+G S+G+GF+ F +DA+KA +NG E++GR + VG R E
Sbjct: 214 FGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVE 271
Score = 171 (65.3 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 50/195 (25%), Positives = 93/195 (47%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L + I+ L + R L++ FS GK+ V+++ + + +G ++ F+
Sbjct: 182 ELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMR-DDSGHSRGFGFVNFEK 240
Query: 68 PESVPLAM-GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG+++ G + V Q R Q R T + LY+ +
Sbjct: 241 HEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L +I ++ LR F P+G I + ++M + G SKG+GF+ F S ++A KA ++NG +
Sbjct: 301 LDDSIDDEKLRKEFAPYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 182 AGRPMKVGTVTDRNE 196
+P+ V + E
Sbjct: 359 GTKPLYVALAQRKEE 373
Score = 159 (61.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 51/165 (30%), Positives = 79/165 (47%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ TRR G AYI F+ P A+ +N + + G PI +
Sbjct: 27 LYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P L+ G G ++I +L +I L F FG I + +++ D D
Sbjct: 87 SQRD--------PGLRKSGVGN---VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-D 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G S+G+GF+ F + + A+ A +NG L R + VG R E
Sbjct: 135 HG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRRE 178
Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 110 GTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADD 168
G G P+ LY+G LH ++TE ML F P G I +I++ D T RS GY +I F D
Sbjct: 5 GPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 169 AKKAQEQLNGFE-LAGRPMKV 188
A++A + +N FE + G+P+++
Sbjct: 65 AERALDTMN-FEVIKGQPIRI 84
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 195 (73.7 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 63/239 (26%), Positives = 114/239 (47%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L + ++ ++ + + +L E FS GK V+++ + + + KG ++ ++
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMR-DCSGKSKGFGFVSYEK 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQ------AEKNRAGNTLPNLQPRGTGGPMRLYIG 120
E A+ +NG+++ G I V Q AE R L + G + LYI
Sbjct: 241 HEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQG-VNLYIK 299
Query: 121 SLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE 180
+L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG
Sbjct: 300 NLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 181 LAGRPMKVGTVTDRNESVGGGPSNLDTDEMER-AGVDLGATGRLQLMFKLAEGTGLELP 238
+ +P+ V + E ++L M+R AG+ + F+ A G G +P
Sbjct: 358 VGSKPLYVALAQRKEER----KAHLTNQYMQRVAGMRALPANAILNQFQPAAG-GYFVP 411
Score = 186 (70.5 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 52/190 (27%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + +F L + I + L + FS+ G + +++ C++ KG A++ F+
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYAFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L T +YI + +
Sbjct: 148 QEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAE-LGAKAKEFTN----VYIKNFGEEV 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ LR +F FGK ++++M D +G+SKG+GF+++ +DA KA E++NG E++G+ +
Sbjct: 203 DDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 FVGRAQKKVE 271
Score = 168 (64.2 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 53/165 (32%), Positives = 80/165 (48%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G V +R+ TRR G AY+ F+ P A+ +N + G PI +
Sbjct: 27 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGY F+ F + + A KA E++NG L R + VG R E
Sbjct: 135 NG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 135 (52.6 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 114 PMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172
PM LY+G LH ++TE ML F P G + +I++ D T RS GY ++ F DA++A
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 173 QEQLNGFELAGRPMKV 188
+ +N + G+P+++
Sbjct: 69 LDTMNFDVIKGKPIRI 84
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 194 (73.4 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 63/239 (26%), Positives = 113/239 (47%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L + ++ ++ + + L+E FS GK V+++ + + KG ++ ++
Sbjct: 84 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPNGKSKGFGFVSYEK 142
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQ------AEKNRAGNTLPNLQPRGTGGPMRLYIG 120
E A+ +NG+++ G I V Q AE R L + G + LYI
Sbjct: 143 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG-VNLYIK 201
Query: 121 SLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE 180
+L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG
Sbjct: 202 NLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 259
Query: 181 LAGRPMKVGTVTDRNESVGGGPSNLDTDEMER-AGVDLGATGRLQLMFKLAEGTGLELP 238
+ +P+ V + E ++L M+R AG+ + F+ A G G +P
Sbjct: 260 VGSKPLYVALAQRKEER----KAHLTNQYMQRVAGMRALPANAILNQFQPAAG-GYFVP 313
Score = 192 (72.6 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 50/179 (27%), Positives = 95/179 (53%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L 77
+F L + I + L + FS+ G + +++ C++ KG A++ F+ E+ A+ +
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYAFVHFETQEAADKAIEKM 60
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEP 137
NG L + V ++ K R L T +YI + + ++ L+ +F
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAE-LGAKAKEFTN----VYIKNFGEEVDDESLKELFSQ 115
Query: 138 FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FGK ++++M DP+ G+SKG+GF+++ +DA KA E++NG E++G+ + VG + E
Sbjct: 116 FGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 173
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 195 (73.7 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 63/239 (26%), Positives = 114/239 (47%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L + ++ ++ + + +L E FS GK V+++ + + + KG ++ ++
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMR-DCSGKSKGFGFVSYEK 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQ------AEKNRAGNTLPNLQPRGTGGPMRLYIG 120
E A+ +NG+++ G I V Q AE R L + G + LYI
Sbjct: 241 HEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQG-VNLYIK 299
Query: 121 SLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE 180
+L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG
Sbjct: 300 NLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 181 LAGRPMKVGTVTDRNESVGGGPSNLDTDEMER-AGVDLGATGRLQLMFKLAEGTGLELP 238
+ +P+ V + E ++L M+R AG+ + F+ A G G +P
Sbjct: 358 VGSKPLYVALAQRKEER----KAHLTNQYMQRVAGMRALPANAILNQFQPAAG-GYFVP 411
Score = 186 (70.5 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 52/190 (27%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + +F L + I + L + FS+ G + +++ C++ KG A++ F+
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYAFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L T +YI + +
Sbjct: 148 QEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAE-LGAKAKEFTN----VYIKNFGEEV 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ LR +F FGK ++++M D +G+SKG+GF+++ +DA KA E++NG E++G+ +
Sbjct: 203 DDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 FVGRAQKKVE 271
Score = 168 (64.2 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 53/165 (32%), Positives = 80/165 (48%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G V +R+ TRR G AY+ F+ P A+ +N + G PI +
Sbjct: 27 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGY F+ F + + A KA E++NG L R + VG R E
Sbjct: 135 NG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 135 (52.6 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 114 PMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172
PM LY+G LH ++TE ML F P G + +I++ D T RS GY ++ F DA++A
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 173 QEQLNGFELAGRPMKV 188
+ +N + G+P+++
Sbjct: 69 LDTMNFDVIKGKPIRI 84
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 194 (73.4 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 63/239 (26%), Positives = 113/239 (47%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L + ++ ++ + + L+E FS GK V+++ + + KG ++ ++
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPNGKSKGFGFVSYEK 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQ------AEKNRAGNTLPNLQPRGTGGPMRLYIG 120
E A+ +NG+++ G I V Q AE R L + G + LYI
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG-VNLYIK 299
Query: 121 SLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE 180
+L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG
Sbjct: 300 NLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 181 LAGRPMKVGTVTDRNESVGGGPSNLDTDEMER-AGVDLGATGRLQLMFKLAEGTGLELP 238
+ +P+ V + E ++L M+R AG+ + F+ A G G +P
Sbjct: 358 VGSKPLYVALAQRKEER----KAHLTNQYMQRVAGMRALPANAILNQFQPAAG-GYFVP 411
Score = 193 (73.0 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + +F L + I + L + FS+ G + +++ C++ KG A++ F+
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYAFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L T +YI + +
Sbjct: 148 QEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE-LGAKAKEFTN----VYIKNFGEEV 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FGK ++++M DP+ G+SKG+GF+++ +DA KA E++NG E++G+ +
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 FVGRAQKKVE 271
Score = 167 (63.8 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 53/165 (32%), Positives = 80/165 (48%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G V +R+ TRR G AY+ F+ P A+ +N + G PI +
Sbjct: 27 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGY F+ F + + A KA E++NG L R + VG R E
Sbjct: 135 NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 135 (52.6 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 114 PMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172
PM LY+G LH ++TE ML F P G + +I++ D T RS GY ++ F DA++A
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 173 QEQLNGFELAGRPMKV 188
+ +N + G+P+++
Sbjct: 69 LDTMNFDVIKGKPIRI 84
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 194 (73.4 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 51/179 (28%), Positives = 90/179 (50%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GL 77
IF L I + L + FS+ GK+ ++ T ++ + K ++ ++ E+ A+ +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVAT-DEFGQSKCFGFVHYETAEAAEAAIENV 200
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEP 137
NG L + V ++K+R ++ T +Y+ ++ N +E+ +F P
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESK-FEEMKANFTN----IYVKNIDLNYSEESFEKLFSP 255
Query: 138 FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FGKI +I L D D G+SKG+GF+ F + A KA E+LN E+ G+ + VG + E
Sbjct: 256 FGKITSIYLEKDQD-GKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRE 313
Score = 175 (66.7 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 51/185 (27%), Positives = 90/185 (48%)
Query: 12 EERDAR--TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
EE A I+ + E+ FS GK+ + L ++ + KG ++ F+D E
Sbjct: 226 EEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEK-DQDGKSKGFGFVNFEDHE 284
Query: 70 SVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPN-----LQPRGTGGPMRLYIGSLH 123
S A+ LN +++ G I V Q ++ R L+ + L++ +L
Sbjct: 285 SAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLD 344
Query: 124 FNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG 183
I + L F+PFG I + ++MVD + G+SKG+GF+ F + ++A KA ++N + G
Sbjct: 345 DTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEATKAITEMNTRMING 403
Query: 184 RPMKV 188
+P+ V
Sbjct: 404 KPLYV 408
Score = 151 (58.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 47/176 (26%), Positives = 87/176 (49%)
Query: 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLA 74
++ +++ +L+ + L E FS +G+V +R+ +++ G AY+ + E A
Sbjct: 50 NSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKA 109
Query: 75 MG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRG 133
+ LN + G P + +Q + P+ + G G ++I +LH I L
Sbjct: 110 IEELNYNPIEGRPCRIMWSQRD--------PSARRSGDGN---IFIKNLHPAIDNKALHD 158
Query: 134 IFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
F FGKI + ++ D + G+SK +GF+ + +A+ A+ A E +NG L R + VG
Sbjct: 159 TFSAFGKILSCKVATD-EFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVG 213
>UNIPROTKB|G3V2B4 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780 EMBL:AL135998
HGNC:HGNC:20155 ChiTaRS:RBM23 ProteinModelPortal:G3V2B4 SMR:G3V2B4
Ensembl:ENST00000555722 ArrayExpress:G3V2B4 Bgee:G3V2B4
Uniprot:G3V2B4
Length = 51
Score = 171 (65.3 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 22 MQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVP 72
MQL+ RIR RDLE+FFS+VGKVRDVR+I+ +RR KGIAY+EF + +SVP
Sbjct: 1 MQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 51
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 194 (73.4 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 63/239 (26%), Positives = 113/239 (47%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L + ++ ++ + + L+E FS GK V+++ + + KG ++ ++
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPNGKSKGFGFVSYEK 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQ------AEKNRAGNTLPNLQPRGTGGPMRLYIG 120
E A+ +NG+++ G I V Q AE R L + G + LYI
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG-VNLYIK 299
Query: 121 SLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE 180
+L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG
Sbjct: 300 NLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 181 LAGRPMKVGTVTDRNESVGGGPSNLDTDEMER-AGVDLGATGRLQLMFKLAEGTGLELP 238
+ +P+ V + E ++L M+R AG+ + F+ A G G +P
Sbjct: 358 VGSKPLYVALAQRKEER----KAHLTNQYMQRVAGMRALPANAILNQFQPAAG-GYFVP 411
Score = 193 (73.0 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + +F L + I + L + FS+ G + +++ C++ KG A++ F+
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYAFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L T +YI + +
Sbjct: 148 QEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE-LGAKAKEFTN----VYIKNFGEEV 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FGK ++++M DP+ G+SKG+GF+++ +DA KA E++NG E++G+ +
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 FVGRAQKKVE 271
Score = 167 (63.8 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 53/165 (32%), Positives = 80/165 (48%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G V +R+ TRR G AY+ F+ P A+ +N + G PI +
Sbjct: 27 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGY F+ F + + A KA E++NG L R + VG R E
Sbjct: 135 NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 135 (52.6 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 114 PMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172
PM LY+G LH ++TE ML F P G + +I++ D T RS GY ++ F DA++A
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 173 QEQLNGFELAGRPMKV 188
+ +N + G+P+++
Sbjct: 69 LDTMNFDVIKGKPIRI 84
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 184 (69.8 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 52/191 (27%), Positives = 88/191 (46%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLA-MGL 77
+F L + + L + F S G V V +I T R +G ++ V A
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 78 NGQKLLGIPIIVQ----PTQAEKN----------RAGNTLPNLQPRGTGGPMRLYIGSLH 123
NG +L G P+ V P + E +G+ G G R+Y+G+L
Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLS 212
Query: 124 FNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG 183
+ + + L +F GK+ +++ D D+GRSKG+GF+T+ S+ + + A + L+G +L G
Sbjct: 213 WGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDG 272
Query: 184 RPMKVGTVTDR 194
R ++V R
Sbjct: 273 RQIRVSEAEAR 283
Score = 177 (67.4 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 29/74 (39%), Positives = 51/74 (68%)
Query: 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
++L++G+L FN+ L +FE G ++ ++++ D TGRS+G+GF+T S + + A +
Sbjct: 91 LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQ 150
Query: 175 QLNGFELAGRPMKV 188
Q NG+EL GRP++V
Sbjct: 151 QFNGYELDGRPLRV 164
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 181 (68.8 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 55/222 (24%), Positives = 106/222 (47%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L 77
++ +S ++ + F+ G ++ + + T++ KG A++E++ PE LA+ +
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191
Query: 78 NGQKLLGIPIIV-QPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFE 136
NG + G I V +P+ + A + +Q R+Y+ S+H +++E+ ++ +FE
Sbjct: 192 NGALMGGRNIKVGRPSNMPQ--AQQVIDEVQEEAKSFN-RIYVASIHPDLSEEDIKSVFE 248
Query: 137 PFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG-TVTDRN 195
FG I +L KGYGFI + + +A +N F+L G+ ++VG ++T N
Sbjct: 249 AFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPN 308
Query: 196 ESVGGGPSNLDTDEMERAGVDLGATGRLQLMFKLAEGTGLEL 237
P+ T A AT ++Q + +A L L
Sbjct: 309 ALAC--PTTNSTMPTAAAVAAAAATAKIQALDAVASNAVLGL 348
Score = 164 (62.8 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+Y+GS+ F + ED +R F PFG I +I + DP T + KG+ F+ + + A+ A EQ
Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190
Query: 176 LNGFELAGRPMKVG 189
+NG + GR +KVG
Sbjct: 191 MNGALMGGRNIKVG 204
Score = 54 (24.1 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 267 PIATQCFLLANMFDPATETNPTWDVEIRDDVIEECNKHGVGASTVCF 313
P+ ++ +L NM P D +++++ EEC+K G + + F
Sbjct: 533 PVDSRVIILRNMVGPEDV-----DETLQEEIQEECSKFGTVSRVIIF 574
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 192 (72.6 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 50/179 (27%), Positives = 93/179 (51%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L 77
IF L I + L + FS+ G + +++ C++ +G ++ F+ E+ A+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVV-CDE-HGSRGFGFVHFETHEAAQNAISTM 158
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEP 137
NG L + V ++ + R L R +Y+ +LH ++ E L+ +F
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE----VELGARAMEFT-NIYVKNLHVDVDEQRLQDLFSQ 213
Query: 138 FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FGK+ ++++M D D+G S+G+GF+ F ++A+KA +NG E++GR + VG R E
Sbjct: 214 FGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVE 271
Score = 169 (64.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 49/195 (25%), Positives = 93/195 (47%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF-K 66
+L + I+ L + + L++ FS GK+ V+++ + + +G ++ F K
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMR-DDSGHSRGFGFVNFEK 240
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E+ + +NG+++ G + V Q R Q R T + LY+ +
Sbjct: 241 HEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L +I ++ LR F P+G I + ++M + G SKG+GF+ F S ++A KA ++NG +
Sbjct: 301 LDDSIDDEKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 182 AGRPMKVGTVTDRNE 196
+P+ V + E
Sbjct: 359 GTKPLYVALAQRKEE 373
Score = 156 (60.0 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 50/165 (30%), Positives = 79/165 (47%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ TRR G AYI F+ P A+ +N + + G PI +
Sbjct: 27 LYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PGLRKSGVGN---IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G S+G+GF+ F + + A+ A +NG L R + VG R E
Sbjct: 135 HG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRRE 178
Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 110 GTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADD 168
G G P+ LY+G LH ++TE ML F P G I +I++ D T RS GY +I F D
Sbjct: 5 GPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 169 AKKAQEQLNGFE-LAGRPMKV 188
A++A + +N FE + G+P+++
Sbjct: 65 AERALDTMN-FEVIKGQPIRI 84
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 169 (64.5 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 43/150 (28%), Positives = 81/150 (54%)
Query: 48 LITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL 106
++ C++ KG A++ F+ E+ A+ +NG L + V ++ K R L
Sbjct: 42 IVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE-LGAK 99
Query: 107 QPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSA 166
T +YI + + ++ L+ +F FGK ++++M DP+ G+SKG+GF+++
Sbjct: 100 AKEFTN----VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKH 154
Query: 167 DDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
+DA KA E++NG E++G+ + VG + E
Sbjct: 155 EDANKAVEEMNGKEISGKIIFVGRAQKKVE 184
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 169 (64.5 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPM-RLYIGSLHFNITEDMLRGIFE 136
NG +LL + P Q + + + LP + P +L+IG L +++ E L+ F
Sbjct: 4 NGIELLVRRVSAIP-QHSISSSFHFLPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFS 62
Query: 137 PFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FG++ +++ D +GRS+G+GF+ F DA A++ ++G L GRP+++ +R
Sbjct: 63 SFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALER-- 120
Query: 197 SVGGGP 202
V GGP
Sbjct: 121 -VRGGP 125
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 169 (64.5 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 35/88 (39%), Positives = 52/88 (59%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L+IG L F+ TE L F +G I N+ + + +T RS+G+GF+TF + DDAK A E
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 176 LNGFELAGRPMKVGTVTDRNESVGGGPS 203
+NG + GR ++V + GGG S
Sbjct: 66 MNGKSVDGRTIRVDEA-GKGGGGGGGRS 92
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 190 (71.9 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 53/180 (29%), Positives = 93/180 (51%)
Query: 3 PAYSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAY 62
P + ++ DA +F Q+ + + +DL+ F GK+ ++ ++ T KG A+
Sbjct: 40 PGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
Query: 63 IEFKDPESVPLAMG-LNGQKLL-GI--PIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLY 118
+ + + ES A L+ QK L G+ PI V+P +E +R G++ P +L+
Sbjct: 100 LTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLRQPP---SQDRKLF 155
Query: 119 IGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNG 178
+G L+ +ED +R +FE FG I+ ++ PD G SKG F+ + S +A+ A L+G
Sbjct: 156 VGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINALHG 214
Score = 125 (49.1 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 37/104 (35%), Positives = 56/104 (53%)
Query: 100 GNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYG 159
GN P+ P ++L+IG + N+ E L+ +FE FGKI + ++ D TG KG
Sbjct: 41 GN--PSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCA 98
Query: 160 FITFHSADDAKKAQEQLNGFE-LAG--RPMKVGTVTDRNESVGG 200
F+T+ + A KAQ L+ + L G RP++V +ES GG
Sbjct: 99 FLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD--SESRGG 140
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 190 (71.9 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 53/180 (29%), Positives = 93/180 (51%)
Query: 3 PAYSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAY 62
P + ++ DA +F Q+ + + +DL+ F GK+ ++ ++ T KG A+
Sbjct: 40 PGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
Query: 63 IEFKDPESVPLAMG-LNGQKLL-GI--PIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLY 118
+ + + ES A L+ QK L G+ PI V+P +E +R G++ P +L+
Sbjct: 100 LTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLRQPP---SQDRKLF 155
Query: 119 IGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNG 178
+G L+ +ED +R +FE FG I+ ++ PD G SKG F+ + S +A+ A L+G
Sbjct: 156 VGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINALHG 214
Score = 125 (49.1 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 37/104 (35%), Positives = 56/104 (53%)
Query: 100 GNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYG 159
GN P+ P ++L+IG + N+ E L+ +FE FGKI + ++ D TG KG
Sbjct: 41 GN--PSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCA 98
Query: 160 FITFHSADDAKKAQEQLNGFE-LAG--RPMKVGTVTDRNESVGG 200
F+T+ + A KAQ L+ + L G RP++V +ES GG
Sbjct: 99 FLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD--SESRGG 140
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 190 (71.9 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 53/180 (29%), Positives = 93/180 (51%)
Query: 3 PAYSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAY 62
P + ++ DA +F Q+ + + +DL+ F GK+ ++ ++ T KG A+
Sbjct: 40 PGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
Query: 63 IEFKDPESVPLAMG-LNGQKLL-GI--PIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLY 118
+ + + ES A L+ QK L G+ PI V+P +E +R G++ P +L+
Sbjct: 100 LTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLRQPP---SQDRKLF 155
Query: 119 IGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNG 178
+G L+ +ED +R +FE FG I+ ++ PD G SKG F+ + S +A+ A L+G
Sbjct: 156 VGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINALHG 214
Score = 125 (49.1 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 37/104 (35%), Positives = 56/104 (53%)
Query: 100 GNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYG 159
GN P+ P ++L+IG + N+ E L+ +FE FGKI + ++ D TG KG
Sbjct: 41 GN--PSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCA 98
Query: 160 FITFHSADDAKKAQEQLNGFE-LAG--RPMKVGTVTDRNESVGG 200
F+T+ + A KAQ L+ + L G RP++V +ES GG
Sbjct: 99 FLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD--SESRGG 140
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 187 (70.9 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLIT-------CNKTRRFKGI---- 60
++ RT++ LS+ + + + FS +G + ++IT N + F +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63
Query: 61 ----AYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPM 115
++EF + A+ +NG+K+LG + V N A T P+ Q + T
Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV-------NWA--TTPSSQKKDTSNHF 114
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+++G L IT + ++ F PFGKI + +++ D TG+SKGYGF++F++ DA+ A
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 176 LNGFELAGRPMKVGTVT 192
+ G L GR ++ T
Sbjct: 175 MGGQWLGGRQIRTNWAT 191
Score = 155 (59.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 46/179 (25%), Positives = 85/179 (47%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK---DPESVPLAM 75
+F LS I T D++ F+ GK+ D R++ T + KG ++ F D E+ + M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLHFNITE 128
G L G+++ +P + + NT ++ + + +Y G + +T+
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V P+ KGY F+ F + + A A +NG + G +K
Sbjct: 236 QLMRQTFSPFGQI--MEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 187 (70.9 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLIT-------CNKTRRFKGI---- 60
++ RT++ LS+ + + + FS +G + ++IT N + F +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63
Query: 61 ----AYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPM 115
++EF + A+ +NG+K+LG + V N A T P+ Q + T
Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV-------NWA--TTPSSQKKDTSNHF 114
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+++G L IT + ++ F PFGKI + +++ D TG+SKGYGF++F++ DA+ A
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 176 LNGFELAGRPMKVGTVT 192
+ G L GR ++ T
Sbjct: 175 MGGQWLGGRQIRTNWAT 191
Score = 155 (59.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 46/179 (25%), Positives = 85/179 (47%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK---DPESVPLAM 75
+F LS I T D++ F+ GK+ D R++ T + KG ++ F D E+ + M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLHFNITE 128
G L G+++ +P + + NT ++ + + +Y G + +T+
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V P+ KGY F+ F + + A A +NG + G +K
Sbjct: 236 QLMRQTFSPFGQI--MEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 185 (70.2 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 46/156 (29%), Positives = 77/156 (49%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLN 78
+F LS + L ++FS G++R+ ++ T+R +G ++ F DP SV +G
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 79 GQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPF 138
+L I P A RA QP+ ++++G L N + ++ FE F
Sbjct: 61 HHELDSKTI--DPKVAFPRRA-------QPKMVTRTKKIFVGGLSANTVVEDVKQYFEQF 111
Query: 139 GKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
GK+++ LM D T R +G+GF+TF + D +K E
Sbjct: 112 GKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 147
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 191 (72.3 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 52/190 (27%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + S+ G + ++ C++ KG ++ F+
Sbjct: 90 DPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVV-CDENGS-KGYGFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L G + V ++ K R L R P +YI + ++
Sbjct: 148 HEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE----LGARAKEFP-NVYIKNFGEDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FG ++++M D ++G+SKG+GF++F +DA+KA +++NG EL G+ +
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 YVGRAQKKVE 271
Score = 190 (71.9 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 53/195 (27%), Positives = 98/195 (50%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L++ F G V+++T +++ + KG ++ F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGN---TLPNL-QPRGTGGPM-RLYIGS 121
E A+ +NG++L G I V Q + R T + Q R T + LY+ +
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 301 LDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 359 ATKPLYVALAQRKEE 373
Score = 140 (54.3 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 45/165 (27%), Positives = 78/165 (47%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ T AY+ F+ + A+ +N + G P+ +
Sbjct: 27 LYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G +++ +L +I L FG I + ++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGYGF+ F + + A++A +++NG L GR + VG R E
Sbjct: 135 NG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKE 178
Score = 123 (48.4 bits), Expect = 0.00018, P = 0.00018
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
LY+G LH ++TE ML F P G I +I++ D T S Y ++ F DA+ A + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 177 NGFELAGRPMKVGTVTDRNESVG-GGPSNLDTDEMERA 213
N + G+P+++ + R+ S+ G N+ ++++
Sbjct: 73 NFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFVKNLDKS 109
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 188 (71.2 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 56/211 (26%), Positives = 96/211 (45%)
Query: 1 MRPAYSDDLSP--EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFK 58
+ P S +L P + R+++ + ++ L+E F+S G V +LI +K+
Sbjct: 41 LEPVPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKS---- 96
Query: 59 GIAYIEFKDPESVPLA-MGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRL 117
++ + D S LA + LNG+ L G PI V A R T +
Sbjct: 97 SYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQR----------EDTSSHFNI 146
Query: 118 YIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLN 177
++G L +T+ L F F + ++M D TGRS+G+GF++F + DA+ A ++N
Sbjct: 147 FVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMN 206
Query: 178 GFELAGRPMKVGTVTDRNESVGGGPSNLDTD 208
G L+ R ++ T + G L +D
Sbjct: 207 GKWLSSRQIRCNWAT---KGATSGDDKLSSD 234
Score = 123 (48.4 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 32/103 (31%), Positives = 51/103 (49%)
Query: 86 PIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQ 145
P ++ P Q E +GN P P +Y+G++H +TE +L+ IF G +++ +
Sbjct: 33 PGVLAPPQLEPVPSGNLPPGFDPSTCRS---VYVGNIHTQVTEPLLQEIFTSTGPVESSK 89
Query: 146 LMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188
L + D YGF+ + A A LNG L G+P+KV
Sbjct: 90 L-IRKD---KSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKV 128
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 187 (70.9 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLIT-------CNKTRRFKGI---- 60
++ RT++ LS+ + + + FS +G + ++IT N + F +
Sbjct: 3 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 62
Query: 61 ----AYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPM 115
++EF + A+ +NG+K+LG + V N A T P+ Q + T
Sbjct: 63 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV-------NWA--TTPSSQKKDTSNHF 113
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+++G L IT + ++ F PFGKI + +++ D TG+SKGYGF++F++ DA+ A
Sbjct: 114 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 173
Query: 176 LNGFELAGRPMKVGTVT 192
+ G L GR ++ T
Sbjct: 174 MGGQWLGGRQIRTNWAT 190
Score = 157 (60.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 46/179 (25%), Positives = 85/179 (47%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK---DPESVPLAM 75
+F LS I T D++ F+ GK+ D R++ T + KG ++ F D E+ + M
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLHFNITE 128
G L G+++ +P + + NT ++ + + +Y G + +T+
Sbjct: 175 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 234
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V P+ KGY F+ F + + A A +NG + G +K
Sbjct: 235 QLMRQTFSPFGQI--MEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 287
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 187 (70.9 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLIT-------CNKTRRFKGI---- 60
++ RT++ LS+ + + + FS +G + ++IT N + F +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63
Query: 61 ----AYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPM 115
++EF + A+ +NG+K+LG + V N A T P+ Q + T
Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV-------NWA--TTPSSQKKDTSNHF 114
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+++G L IT + ++ F PFGKI + +++ D TG+SKGYGF++F++ DA+ A
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 176 LNGFELAGRPMKVGTVT 192
+ G L GR ++ T
Sbjct: 175 MGGQWLGGRQIRTNWAT 191
Score = 157 (60.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 46/179 (25%), Positives = 85/179 (47%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK---DPESVPLAM 75
+F LS I T D++ F+ GK+ D R++ T + KG ++ F D E+ + M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLHFNITE 128
G L G+++ +P + + NT ++ + + +Y G + +T+
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V P+ KGY F+ F + + A A +NG + G +K
Sbjct: 236 QLMRQTFSPFGQI--MEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 191 (72.3 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 49/190 (25%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + +F L + I + L + FS+ G + +++ C++ KG A++ F+
Sbjct: 91 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYAFVHFET 148
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
++ A+ +NG L + V ++ K R + +YI + ++
Sbjct: 149 QDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEF-----TNVYIKNFGDDM 203
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
+ L+ +F+ +GK ++++M DP TG+S+G+GF+++ +DA KA E++NG EL G+ +
Sbjct: 204 DDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTV 262
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 263 FVGRAQKKME 272
Score = 189 (71.6 bits), Expect = 7.6e-12, P = 7.6e-12
Identities = 52/196 (26%), Positives = 96/196 (48%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
++ + ++ ++ + + L+E F GK V+++T + T + +G ++ ++
Sbjct: 183 EMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMT-DPTGKSRGFGFVSYEK 241
Query: 68 PESVPLAMG-LNGQKLLGIPIIV------QPTQAEKNRAGNTLPNLQPRGTGGPMRLYIG 120
E A+ +NG +L G + V QAE R L + G + LYI
Sbjct: 242 HEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQG-VNLYIK 300
Query: 121 SLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE 180
+L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG
Sbjct: 301 NLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMNGRI 358
Query: 181 LAGRPMKVGTVTDRNE 196
+ +P+ V + E
Sbjct: 359 VGSKPLYVALAQRKEE 374
Score = 167 (63.8 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 53/165 (32%), Positives = 80/165 (48%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G V +R+ TRR G AY+ F+ P A+ +N + G PI +
Sbjct: 28 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVVKGKPIRIMW 87
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 88 SQRD--------PSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 135
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGY F+ F + D A +A E++NG L R + VG R E
Sbjct: 136 NG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKE 179
Score = 133 (51.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 114 PMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172
PM LY+G LH +ITE ML F P G + +I++ D T RS GY ++ F DA++A
Sbjct: 10 PMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 69
Query: 173 QEQLNGFELAGRPMKV 188
+ +N + G+P+++
Sbjct: 70 LDTMNFDVVKGKPIRI 85
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 187 (70.9 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLIT-------CNKTRRFKGI---- 60
++ RT++ LS+ + + + FS +G + ++IT N + F +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63
Query: 61 ----AYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPM 115
++EF + A+ +NG+K+LG + V N A T P+ Q + T
Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV-------NWA--TTPSSQKKDTSNHF 114
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+++G L IT + ++ F PFGKI + +++ D TG+SKGYGF++F++ DA+ A
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 176 LNGFELAGRPMKVGTVT 192
+ G L GR ++ T
Sbjct: 175 MGGQWLGGRQIRTNWAT 191
Score = 157 (60.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 46/179 (25%), Positives = 85/179 (47%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK---DPESVPLAM 75
+F LS I T D++ F+ GK+ D R++ T + KG ++ F D E+ + M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLHFNITE 128
G L G+++ +P + + NT ++ + + +Y G + +T+
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V P+ KGY F+ F + + A A +NG + G +K
Sbjct: 236 QLMRQTFSPFGQI--MEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 187 (70.9 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLIT-------CNKTRRFKGI---- 60
++ RT++ LS+ + + + FS +G + ++IT N + F +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63
Query: 61 ----AYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPM 115
++EF + A+ +NG+K+LG + V N A T P+ Q + T
Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV-------NWA--TTPSSQKKDTSNHF 114
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+++G L IT + ++ F PFGKI + +++ D TG+SKGYGF++F++ DA+ A
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 176 LNGFELAGRPMKVGTVT 192
+ G L GR ++ T
Sbjct: 175 MGGQWLGGRQIRTNWAT 191
Score = 157 (60.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 46/179 (25%), Positives = 85/179 (47%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK---DPESVPLAM 75
+F LS I T D++ F+ GK+ D R++ T + KG ++ F D E+ + M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLHFNITE 128
G L G+++ +P + + NT ++ + + +Y G + +T+
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V P+ KGY F+ F + + A A +NG + G +K
Sbjct: 236 QLMRQTFSPFGQI--MEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 187 (70.9 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLIT-------CNKTRRFKGI---- 60
++ RT++ LS+ + + + FS +G + ++IT N + F +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63
Query: 61 ----AYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPM 115
++EF + A+ +NG+K+LG + V N A T P+ Q + T
Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV-------NWA--TTPSSQKKDTSNHF 114
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+++G L IT + ++ F PFGKI + +++ D TG+SKGYGF++F++ DA+ A
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 176 LNGFELAGRPMKVGTVT 192
+ G L GR ++ T
Sbjct: 175 MGGQWLGGRQIRTNWAT 191
Score = 155 (59.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 46/179 (25%), Positives = 85/179 (47%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK---DPESVPLAM 75
+F LS I T D++ F+ GK+ D R++ T + KG ++ F D E+ + M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLHFNITE 128
G L G+++ +P + + NT ++ + + +Y G + +T+
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V P+ KGY F+ F + + A A +NG + G +K
Sbjct: 236 QLMRQTFSPFGQI--MEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 187 (70.9 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLIT-------CNKTRRFKGI---- 60
++ RT++ LS+ + + + FS +G + ++IT N + F +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63
Query: 61 ----AYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPM 115
++EF + A+ +NG+K+LG + V N A T P+ Q + T
Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV-------NWA--TTPSSQKKDTSNHF 114
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+++G L IT + ++ F PFGKI + +++ D TG+SKGYGF++F++ DA+ A
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 176 LNGFELAGRPMKVGTVT 192
+ G L GR ++ T
Sbjct: 175 MGGQWLGGRQIRTNWAT 191
Score = 155 (59.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 46/179 (25%), Positives = 85/179 (47%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK---DPESVPLAM 75
+F LS I T D++ F+ GK+ D R++ T + KG ++ F D E+ + M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 76 G---LNGQKLLGIPIIVQPTQAEKNRAGNT----LPNLQPRGTGGPMRLYIGSLHFNITE 128
G L G+++ +P + + NT ++ + + +Y G + +T+
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
++R F PFG+I +++ V P+ KGY F+ F + + A A +NG + G +K
Sbjct: 236 QLMRQTFSPFGQI--MEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 190 (71.9 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 52/190 (27%), Positives = 92/190 (48%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + +F L + I + L + FS+ G + +++T + KG ++ ++
Sbjct: 89 DPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVT-DDGNSSKGFGFVHYET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
ES A+ +NG + G + V P ++ K R T + + T ++ +L ++
Sbjct: 148 QESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPT----EVKFTN----VFFKNLSEDV 199
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
D L+ + + +G+I NI +M D D G+SKG+GF F SA+ AK E NG G+P+
Sbjct: 200 GPDQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPI 258
Query: 187 KVGTVTDRNE 196
G + E
Sbjct: 259 YAGRAQKKIE 268
Score = 179 (68.1 bits), Expect = 8.4e-11, P = 8.4e-11
Identities = 46/179 (25%), Positives = 84/179 (46%)
Query: 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPES 70
P E +F LS+ + L+E G++ ++ ++ +K + KG + F+ E+
Sbjct: 182 PTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKS-KGFGFANFESAEA 240
Query: 71 VP-LAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITED 129
+ NG+ G PI Q + R + + G + LYI ++ +I D
Sbjct: 241 AKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQG--VNLYIKNIDDSIDND 298
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188
LR +F FG I + +M D SKG+GF+ + + D+A +A ++NG + +P+ V
Sbjct: 299 KLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYV 357
Score = 151 (58.2 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 53/223 (23%), Positives = 99/223 (44%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG- 76
+++ L + + L E F+ VG V ++R+ TRR AY+ + + A+
Sbjct: 11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDT 70
Query: 77 LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFE 136
LN + G + +Q + P+L+ G G ++I +L I L F
Sbjct: 71 LNNTPIRGKACRIMWSQRD--------PSLRKSGVGN---VFIKNLDKGIDHKALYDTFS 119
Query: 137 PFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FG I + +++ D D SKG+GF+ + + + A KA ++NG + G+ + VG E
Sbjct: 120 AFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKE 178
Query: 197 SVGGGPSNLDTDEM--ERAGVDLGATGRLQLMFKLAEGTGLEL 237
G P+ + + + D+G +L+ + E T + +
Sbjct: 179 R--GQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITI 219
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 188 (71.2 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 53/195 (27%), Positives = 96/195 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L+E F G V+++T +++ + KG ++ F+
Sbjct: 14 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT-DESGKSKGFGFVSFER 72
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG++L G I V Q + R Q R T + LY+ +
Sbjct: 73 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 132
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 133 LDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 190
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 191 ATKPLYVALAQRKEE 205
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 188 (71.2 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 52/198 (26%), Positives = 95/198 (47%)
Query: 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVP 72
+ D +F +S L+E+FSS G+V + ++ T R +G ++ F DP
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
Query: 73 LAM----GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITE 128
+ + ++G+ + + + Q NR+ ++ P G G ++++G L ++TE
Sbjct: 62 IVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTE 121
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGF-ELAGRPMK 187
+ FE FG ++ +M D +T R +G+GFIT+ S + +K L F EL G+ ++
Sbjct: 122 SDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL--LKTFHELNGKMVE 179
Query: 188 VGTVTDRNESVGGGPSNL 205
V + S G S L
Sbjct: 180 VKRAVPKELSPGPSRSPL 197
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 187 (70.9 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 47/187 (25%), Positives = 96/187 (51%)
Query: 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVP 72
E R ++ L + I L+++F G + +++++ +K + A++E+
Sbjct: 71 ETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMI-DKNNKNVNYAFVEYHQSHDAN 129
Query: 73 LAMG-LNGQKLLG-IPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDM 130
+A+ LNG+++ I I Q++++ + +T L++G L+ N+ ++
Sbjct: 130 IALQTLNGKQIENNIVKINWAFQSQQSSSDDTF------------NLFVGDLNVNVDDET 177
Query: 131 LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190
LR F+ F + +M D TG S+GYGF++F S DDA+ A + + G +L GRP+++
Sbjct: 178 LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 237
Query: 191 VTDRNES 197
R+ +
Sbjct: 238 AAKRDNN 244
Score = 148 (57.2 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 41/130 (31%), Positives = 66/130 (50%)
Query: 93 QAEKNRAGNTLPNLQPRG--TGGPMR----LYIGSLHFNITEDMLRGIFEPFGKIDNIQL 146
QAE N+ N P++ P TGG LY+G+L ITED+L+ F+ G I NI++
Sbjct: 48 QAEDNQGEND-PSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKI 106
Query: 147 MVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVGGGPSNLD 206
M+D + ++ Y F+ +H + DA A + LNG ++ +K+ +S NL
Sbjct: 107 MIDKNN-KNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLF 165
Query: 207 TDEMERAGVD 216
++ VD
Sbjct: 166 VGDLN-VNVD 174
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 186 (70.5 bits), Expect = 7.1e-12, P = 7.1e-12
Identities = 61/182 (33%), Positives = 86/182 (47%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
+S +DA T++ L +++ L E F G V + + T + +G ++EF
Sbjct: 6 ISERNQDA-TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 69 ESVPLAMGL-NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
E A+ + N KL G PI V A N+ NL G ++IG+L I
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAH-NK------NLD---VGA--NIFIGNLDPEID 112
Query: 128 EDMLRGIFEPFGKI-DNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
E +L F FG I ++M DPDTG SKGY FI F S D + A E +NG L RP+
Sbjct: 113 EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 172
Query: 187 KV 188
V
Sbjct: 173 TV 174
Score = 132 (51.5 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 31/100 (31%), Positives = 56/100 (56%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+Y+G L ++E +L +F G + N + D TG+ +GYGF+ F S +DA A + +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 177 NGFELAGRPMKVGTVTDRNESVGGGPS----NLDTDEMER 212
N +L G+P++V + N+++ G + NLD + E+
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEK 114
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 166 (63.5 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 46/157 (29%), Positives = 78/157 (49%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLN 78
+F LS +DL+++F+ G+V D + T R +G +I FK+P SV +
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQK 61
Query: 79 GQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPF 138
+L G ++ P +A + P ++++G L+ TE+ +R F F
Sbjct: 62 EHRLDGR--LIDPKKAMAMKK-------DP-----VKKIFVGGLNPEATEEKIREYFGEF 107
Query: 139 GKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
G+I+ I+L +DP T + +G+ FITF D KK E+
Sbjct: 108 GEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEK 144
Score = 120 (47.3 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
++++G L ++ ++ L+ F FG++ + + +DP+TGRS+G+GFI F +K EQ
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 176 LNGFELAGR 184
L GR
Sbjct: 61 KE-HRLDGR 68
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 166 (63.5 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172
G +Y+G+ F TE+ L F G+I+N++++ D +TGR +G+ FI F A++A
Sbjct: 3 GIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRA 62
Query: 173 QEQLNGFELAGRPMKV 188
EQ+NG E GRP++V
Sbjct: 63 VEQMNGAEFNGRPLRV 78
Score = 100 (40.3 bits), Expect = 0.00012, P = 0.00012
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 32 DLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIV 89
+L FFSS+G++ +VR++ +T R +G A+IEF + S A+ +NG + G P+ V
Sbjct: 20 ELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRV 78
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 166 (63.5 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 35/92 (38%), Positives = 56/92 (60%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L+IG L+F+ E+ L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 176 LNGFELAGRPMKV---GTVT-DRNESVGGGPS 203
+NG + GR ++V G + DR GG S
Sbjct: 66 MNGKAVDGRQIRVDQAGKSSGDRRGGYRGGSS 97
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 186 (70.5 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 61/182 (33%), Positives = 86/182 (47%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
+S +DA T++ L +++ L E F G V + + T + +G ++EF
Sbjct: 6 ISERNQDA-TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 69 ESVPLAMGL-NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
E A+ + N KL G PI V A N+ NL G ++IG+L I
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAH-NK------NLD---VGA--NIFIGNLDPEID 112
Query: 128 EDMLRGIFEPFGKI-DNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
E +L F FG I ++M DPDTG SKGY FI F S D + A E +NG L RP+
Sbjct: 113 EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 172
Query: 187 KV 188
V
Sbjct: 173 TV 174
Score = 132 (51.5 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 31/100 (31%), Positives = 56/100 (56%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+Y+G L ++E +L +F G + N + D TG+ +GYGF+ F S +DA A + +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 177 NGFELAGRPMKVGTVTDRNESVGGGPS----NLDTDEMER 212
N +L G+P++V + N+++ G + NLD + E+
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEK 114
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 186 (70.5 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 61/182 (33%), Positives = 86/182 (47%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
+S +DA T++ L +++ L E F G V + + T + +G ++EF
Sbjct: 6 ISERNQDA-TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 69 ESVPLAMGL-NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
E A+ + N KL G PI V A N+ NL G ++IG+L I
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAH-NK------NLD---VGA--NIFIGNLDPEID 112
Query: 128 EDMLRGIFEPFGKI-DNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
E +L F FG I ++M DPDTG SKGY FI F S D + A E +NG L RP+
Sbjct: 113 EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 172
Query: 187 KV 188
V
Sbjct: 173 TV 174
Score = 132 (51.5 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 31/100 (31%), Positives = 56/100 (56%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+Y+G L ++E +L +F G + N + D TG+ +GYGF+ F S +DA A + +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 177 NGFELAGRPMKVGTVTDRNESVGGGPS----NLDTDEMER 212
N +L G+P++V + N+++ G + NLD + E+
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEK 114
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 186 (70.5 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 61/182 (33%), Positives = 86/182 (47%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
+S +DA T++ L +++ L E F G V + + T + +G ++EF
Sbjct: 6 ISERNQDA-TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 69 ESVPLAMGL-NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
E A+ + N KL G PI V A N+ NL G ++IG+L I
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAH-NK------NLD---VGA--NIFIGNLDPEID 112
Query: 128 EDMLRGIFEPFGKI-DNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
E +L F FG I ++M DPDTG SKGY FI F S D + A E +NG L RP+
Sbjct: 113 EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 172
Query: 187 KV 188
V
Sbjct: 173 TV 174
Score = 132 (51.5 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 31/100 (31%), Positives = 56/100 (56%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+Y+G L ++E +L +F G + N + D TG+ +GYGF+ F S +DA A + +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 177 NGFELAGRPMKVGTVTDRNESVGGGPS----NLDTDEMER 212
N +L G+P++V + N+++ G + NLD + E+
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEK 114
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 186 (70.5 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 61/182 (33%), Positives = 86/182 (47%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
+S +DA T++ L +++ L E F G V + + T + +G ++EF
Sbjct: 6 ISERNQDA-TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 69 ESVPLAMGL-NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
E A+ + N KL G PI V A N+ NL G ++IG+L I
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAH-NK------NLD---VGA--NIFIGNLDPEID 112
Query: 128 EDMLRGIFEPFGKI-DNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
E +L F FG I ++M DPDTG SKGY FI F S D + A E +NG L RP+
Sbjct: 113 EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 172
Query: 187 KV 188
V
Sbjct: 173 TV 174
Score = 132 (51.5 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 31/100 (31%), Positives = 56/100 (56%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+Y+G L ++E +L +F G + N + D TG+ +GYGF+ F S +DA A + +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 177 NGFELAGRPMKVGTVTDRNESVGGGPS----NLDTDEMER 212
N +L G+P++V + N+++ G + NLD + E+
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEK 114
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 186 (70.5 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 61/182 (33%), Positives = 86/182 (47%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
+S +DA T++ L +++ L E F G V + + T + +G ++EF
Sbjct: 6 ISERNQDA-TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 69 ESVPLAMGL-NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
E A+ + N KL G PI V A N+ NL G ++IG+L I
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAH-NK------NLD---VGA--NIFIGNLDPEID 112
Query: 128 EDMLRGIFEPFGKI-DNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
E +L F FG I ++M DPDTG SKGY FI F S D + A E +NG L RP+
Sbjct: 113 EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 172
Query: 187 KV 188
V
Sbjct: 173 TV 174
Score = 132 (51.5 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 31/100 (31%), Positives = 56/100 (56%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+Y+G L ++E +L +F G + N + D TG+ +GYGF+ F S +DA A + +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 177 NGFELAGRPMKVGTVTDRNESVGGGPS----NLDTDEMER 212
N +L G+P++V + N+++ G + NLD + E+
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEK 114
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 186 (70.5 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 61/182 (33%), Positives = 86/182 (47%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
+S +DA T++ L +++ L E F G V + + T + +G ++EF
Sbjct: 6 ISERNQDA-TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 69 ESVPLAMGL-NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
E A+ + N KL G PI V A N+ NL G ++IG+L I
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAH-NK------NLD---VGA--NIFIGNLDPEID 112
Query: 128 EDMLRGIFEPFGKI-DNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
E +L F FG I ++M DPDTG SKGY FI F S D + A E +NG L RP+
Sbjct: 113 EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 172
Query: 187 KV 188
V
Sbjct: 173 TV 174
Score = 132 (51.5 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 31/100 (31%), Positives = 56/100 (56%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+Y+G L ++E +L +F G + N + D TG+ +GYGF+ F S +DA A + +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 177 NGFELAGRPMKVGTVTDRNESVGGGPS----NLDTDEMER 212
N +L G+P++V + N+++ G + NLD + E+
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEK 114
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 187 (70.9 bits), Expect = 7.5e-12, P = 7.5e-12
Identities = 52/187 (27%), Positives = 88/187 (47%)
Query: 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAY--IEFKDPES 70
E + R ++ L R+ L++ F + G V V++I +K KG Y +EF DP +
Sbjct: 86 EPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIP-DKNFNSKGANYGFVEFDDPGA 144
Query: 71 VPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITED 129
AM LNG+++ I V A ++ N T +++G L + ++
Sbjct: 145 AERAMQTLNGRRIHQSEIRVN--WAYQSNTANK------EDTSNHFHIFVGDLSNEVNDE 196
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
+L F FG + ++M D TGRS+GYGF+ F DA+KA ++G L R ++
Sbjct: 197 VLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCN 256
Query: 190 TVTDRNE 196
+ +
Sbjct: 257 WANQKGQ 263
Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKG--YGFITFHSADDAKKAQE 174
LY+G L +TED+L+ IFE G + +++++ D + SKG YGF+ F A++A +
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFN-SKGANYGFVEFDDPGAAERAMQ 150
Query: 175 QLNGFELAGRPMKVGTVTDRNESVGGGPSN 204
LNG + ++V N + SN
Sbjct: 151 TLNGRRIHQSEIRVNWAYQSNTANKEDTSN 180
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 189 (71.6 bits), Expect = 7.5e-12, P = 7.5e-12
Identities = 52/195 (26%), Positives = 96/195 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L++ FS G +R++T ++ + +G ++ F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMT-DENGKSRGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG+++ G I V Q + R Q R T + LY+ +
Sbjct: 241 HEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M+D GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 301 LDDGIDDERLRKEFSPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 359 ATKPLYVALAQRKEE 373
Score = 182 (69.1 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 56/215 (26%), Positives = 105/215 (48%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + FS+ G + +++ C++ KG ++ F+
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYGFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L R +YI + ++
Sbjct: 148 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE----LGARAKEFT-NVYIKNFGEDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
+D L+ IF +G +I++M D + G+S+G+GF++F +DA++A +++NG E+ G+ +
Sbjct: 203 DDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLI 261
Query: 187 KVGTV---TDRNESVGGGPSNLDTDEMER-AGVDL 217
VG +R + + D M R GV+L
Sbjct: 262 YVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNL 296
Score = 176 (67.0 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 53/180 (29%), Positives = 88/180 (48%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG- 76
+++ L Q + L E FS G + +R+ TRR G AY+ F+ P A+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 77 LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFE 136
+N + G P+ + +Q + P+L+ G G ++I +L +I L F
Sbjct: 72 MNFDVIKGRPVRIMWSQRD--------PSLRKSGVGN---IFIKNLDKSIDNKALYDTFS 120
Query: 137 PFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FG I + +++ D + G SKGYGF+ F + + A++A E++NG L R + VG R E
Sbjct: 121 AFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 143 (55.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 35/110 (31%), Positives = 60/110 (54%)
Query: 106 LQPRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH 164
+ P PM LY+G LH ++TE ML F P G I +I++ D T RS GY ++ F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 165 SADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVG-GGPSNLDTDEMERA 213
DA++A + +N + GRP+++ + R+ S+ G N+ ++++
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRI-MWSQRDPSLRKSGVGNIFIKNLDKS 109
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 184 (69.8 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 49/166 (29%), Positives = 79/166 (47%)
Query: 10 SPEE-RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
SP+ D +F LS + L E+F G+V++ ++ T+R +G ++ F D
Sbjct: 12 SPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 71
Query: 69 ESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITE 128
V + + +L I P A RA QP+ ++++G L N T
Sbjct: 72 AGVDKVLAQSRHELDSKTI--DPKVAFPRRA-------QPKMVTRTKKIFVGGLSVNTTV 122
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
+ ++ FE FGK+D+ LM D T R +G+GF+TF S D +K E
Sbjct: 123 EDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 184 (69.8 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 49/166 (29%), Positives = 79/166 (47%)
Query: 10 SPEE-RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
SP+ D +F LS + L E+F G+V++ ++ T+R +G ++ F D
Sbjct: 12 SPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 71
Query: 69 ESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITE 128
V + + +L I P A RA QP+ ++++G L N T
Sbjct: 72 AGVDKVLAQSRHELDSKTI--DPKVAFPRRA-------QPKMVTRTKKIFVGGLSVNTTV 122
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
+ ++ FE FGK+D+ LM D T R +G+GF+TF S D +K E
Sbjct: 123 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 184 (69.8 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 49/166 (29%), Positives = 79/166 (47%)
Query: 10 SPEE-RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
SP+ D +F LS + L E+F G+V++ ++ T+R +G ++ F D
Sbjct: 12 SPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 71
Query: 69 ESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITE 128
V + + +L I P A RA QP+ ++++G L N T
Sbjct: 72 AGVDKVLAQSRHELDSKTI--DPKVAFPRRA-------QPKMVTRTKKIFVGGLSVNTTV 122
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
+ ++ FE FGK+D+ LM D T R +G+GF+TF S D +K E
Sbjct: 123 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 184 (69.8 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 49/166 (29%), Positives = 79/166 (47%)
Query: 10 SPEE-RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
SP+ D +F LS + L E+F G+V++ ++ T+R +G ++ F D
Sbjct: 12 SPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 71
Query: 69 ESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITE 128
V + + +L I P A RA QP+ ++++G L N T
Sbjct: 72 AGVDKVLAQSRHELDSKTI--DPKVAFPRRA-------QPKMVTRTKKIFVGGLSVNTTV 122
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
+ ++ FE FGK+D+ LM D T R +G+GF+TF S D +K E
Sbjct: 123 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 188 (71.2 bits), Expect = 8.3e-12, P = 8.3e-12
Identities = 53/195 (27%), Positives = 96/195 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L+E F G V+++T +++ + KG ++ F+
Sbjct: 118 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT-DESGKSKGFGFVSFER 176
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG++L G I V Q + R Q R T + LY+ +
Sbjct: 177 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 236
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 237 LDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 294
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 295 ATKPLYVALAQRKEE 309
Score = 182 (69.1 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 51/190 (26%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + FS+ G + +++ C++ KG ++ F+
Sbjct: 26 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYGFVHFET 83
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L R +YI + ++
Sbjct: 84 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE----LGARAKEFT-NVYIKNFGEDM 138
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FG ++++M D ++G+SKG+GF++F +DA+KA +++NG EL G+ +
Sbjct: 139 DDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 197
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 198 YVGRAQKKVE 207
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 165 (63.1 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 34/92 (36%), Positives = 55/92 (59%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKV---GTVTD-RNESVGGGPS 203
+NG + GR ++V G +D R+ GG S
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSS 98
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 165 (63.1 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 39/95 (41%), Positives = 57/95 (60%)
Query: 107 QPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSA 166
Q RG +L+IG L F TE L F G++ Q+++D + RSKG+GF+TF SA
Sbjct: 28 QRRGVAS--KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASA 85
Query: 167 DDAKKAQEQLNGFELAGRPMKVGTVTDRNESVGGG 201
D+A+KA + NG +L GR + V + +S+GGG
Sbjct: 86 DEAQKALMEFNGQQLNGRTIFVDYAKAK-QSLGGG 119
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 179 (68.1 bits), Expect = 9.4e-12, P = 9.4e-12
Identities = 50/166 (30%), Positives = 81/166 (48%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
S E DA +F LS +DL+++F+ G+V D + T R KG +I FKD
Sbjct: 57 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAA 116
Query: 70 SVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITED 129
SV + +L G ++ P +A + P ++++G L+ TE+
Sbjct: 117 SVEKVLDQKEHRLDGR--VIDPKKAMAMKK-------DP-----VKKIFVGGLNPEATEE 162
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+R F FG+I+ I+L +DP T + +G+ FITF + KK E+
Sbjct: 163 KIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEK 208
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 188 (71.2 bits), Expect = 9.9e-12, P = 9.9e-12
Identities = 53/195 (27%), Positives = 96/195 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L+E F G V+++T +++ + KG ++ F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT-DESGKSKGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG++L G I V Q + R Q R T + LY+ +
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 301 LDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 359 ATKPLYVALAQRKEE 373
Score = 182 (69.1 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 51/190 (26%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + FS+ G + +++ C++ KG ++ F+
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYGFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L R +YI + ++
Sbjct: 148 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE----LGARAKEFT-NVYIKNFGEDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FG ++++M D ++G+SKG+GF++F +DA+KA +++NG EL G+ +
Sbjct: 203 DDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 YVGRAQKKVE 271
Score = 171 (65.3 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 51/165 (30%), Positives = 82/165 (49%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ TRR G AY+ F+ P A+ +N + G P+ +
Sbjct: 27 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGYGF+ F + + A++A E++NG L R + VG R E
Sbjct: 135 NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 139 (54.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 34/110 (30%), Positives = 60/110 (54%)
Query: 106 LQPRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH 164
+ P PM LY+G LH ++TE ML F P G I +I++ D T RS GY ++ F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 165 SADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVG-GGPSNLDTDEMERA 213
DA++A + +N + G+P+++ + R+ S+ G N+ ++++
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKS 109
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 188 (71.2 bits), Expect = 9.9e-12, P = 9.9e-12
Identities = 53/195 (27%), Positives = 96/195 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L+E F G V+++T +++ + KG ++ F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT-DESGKSKGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG++L G I V Q + R Q R T + LY+ +
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 301 LDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 359 ATKPLYVALAQRKEE 373
Score = 182 (69.1 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 51/190 (26%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + FS+ G + +++ C++ KG ++ F+
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYGFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L R +YI + ++
Sbjct: 148 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE----LGARAKEFT-NVYIKNFGEDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FG ++++M D ++G+SKG+GF++F +DA+KA +++NG EL G+ +
Sbjct: 203 DDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 YVGRAQKKVE 271
Score = 171 (65.3 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 51/165 (30%), Positives = 82/165 (49%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ TRR G AY+ F+ P A+ +N + G P+ +
Sbjct: 27 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGYGF+ F + + A++A E++NG L R + VG R E
Sbjct: 135 NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 139 (54.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 34/110 (30%), Positives = 60/110 (54%)
Query: 106 LQPRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH 164
+ P PM LY+G LH ++TE ML F P G I +I++ D T RS GY ++ F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 165 SADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVG-GGPSNLDTDEMERA 213
DA++A + +N + G+P+++ + R+ S+ G N+ ++++
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKS 109
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 182 (69.1 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 46/185 (24%), Positives = 83/185 (44%)
Query: 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPES 70
PE + +F L+ + ++ L F G V +I +T + +G ++ +
Sbjct: 144 PEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203
Query: 71 VPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITED 129
A+ N L G + V +R P PR R+Y+G+L +++
Sbjct: 204 AETAVEKFNRYDLNGRLLTVNKAAPRGSR-----PERAPRVYEPAFRVYVGNLPWDVDNG 258
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
L +F GK+ +++ D +TGRS+G+GF+T D+ +A L+G L GR ++V
Sbjct: 259 RLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318
Query: 190 TVTDR 194
+R
Sbjct: 319 VAEER 323
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 164 (62.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L+IG L+F ED L F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 176 LNGFELAGRPMKV 188
+NG + GR ++V
Sbjct: 66 MNGKSVDGRQIRV 78
>DICTYBASE|DDB_G0275459 [details] [associations]
symbol:DDB_G0275459 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275459 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724 KO:K11294
RefSeq:XP_643642.1 ProteinModelPortal:Q75K16 STRING:Q75K16
PRIDE:Q75K16 EnsemblProtists:DDB0231494 GeneID:8620229
KEGG:ddi:DDB_G0275459 InParanoid:Q75K16 OMA:LRINGAN Uniprot:Q75K16
Length = 299
Score = 179 (68.1 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 58/208 (27%), Positives = 96/208 (46%)
Query: 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLA 74
D +F QL + DL+E+FS G + +++++ N R A+I F D + A
Sbjct: 74 DDLKVFVGQLPSGVTEYDLKEYFSECGDISNIKILNSNPQRV---AAFITFADEKGRDTA 130
Query: 75 MGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGI 134
+ NG+ G + + N+ P+ G G P + ++ F + E +++
Sbjct: 131 ITYNGKDFNGQGSL-------RINGANSKPS---DGEGEPTTIVCRNIAFTVDETLVKEF 180
Query: 135 FEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDR 194
F G I + L V D+GR KG+ F++F S D +KA L G + GR ++V +R
Sbjct: 181 FSKCGSISRVSLPVYEDSGRLKGFAFVSFDSEDAVEKAIA-LTGTKFEGREIQV----ER 235
Query: 195 NESVGGGPSNLDTDEMERAGVDLGATGR 222
++ GGG S+ R G G GR
Sbjct: 236 SQR-GGGRSSSFGRGGGRGGFGGGRGGR 262
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 163 (62.4 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 45/157 (28%), Positives = 79/157 (50%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLN 78
+F LS +DL+++FS G+V D L T R +G ++ FK+ ESV M
Sbjct: 3 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 62
Query: 79 GQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPF 138
KL G ++ P +A+ + +P ++++G L + E+ +R F F
Sbjct: 63 EHKLNGK--VIDPKRAK------AMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGGF 109
Query: 139 GKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
G++++I+L +D T + +G+ FITF + KK E+
Sbjct: 110 GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 146
Score = 128 (50.1 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 32/113 (28%), Positives = 58/113 (51%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+++IG L ++ T+ L+ F FG++ + L +DP TGRS+G+GF+ F ++ K +Q
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 176 ----LNGFELAGRPMKVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQ 224
LNG + + K + + + G + DT E E+ G G ++
Sbjct: 62 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPE-EKIREYFGGFGEVE 113
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 187 (70.9 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 55/180 (30%), Positives = 96/180 (53%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK-DP 68
S ++RDART+ L ++ +L+E F ++RL++ K + KGIAYIEFK +
Sbjct: 396 SKKDRDARTLLAKNLPYKVTQDELKEVFEDAV---EIRLVS--KDGKSKGIAYIEFKTEA 450
Query: 69 ESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITE 128
++ G ++ G I + T EK ++ + +G L + +L ++ TE
Sbjct: 451 DAEKTLEEKQGTEIDGRSISLYYT-GEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATE 509
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188
+ L+ +FE K +I++ + + G+SKGY FI F S +DAK+A N E+ GR +++
Sbjct: 510 ETLQEVFE---KATHIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 565
Score = 155 (59.6 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 51/188 (27%), Positives = 90/188 (47%)
Query: 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLA 74
+++T+ LS L+E F ++ + N+ + KG A+IEF E A
Sbjct: 494 ESKTLVLSNLSYSATEETLQEVFEKATHIK----VPQNQNGKSKGYAFIEFASFEDAKEA 549
Query: 75 MG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRG 133
+ N +++ G I ++ Q + G+ QP T L++ L + TE+ L+
Sbjct: 550 LNSCNKREIEGRAIRLE-LQGPR---GSPNARSQPSKT-----LFVKGLSEDTTEETLKE 600
Query: 134 IFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193
F+ G I +++ D +TG SKG+GF+ F+S +DAK A+E + E+ G + +
Sbjct: 601 SFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 657
Query: 194 RNESVGGG 201
+ E GG
Sbjct: 658 KGEGGFGG 665
Score = 121 (47.7 bits), Expect = 0.00035, P = 0.00035
Identities = 46/183 (25%), Positives = 89/183 (48%)
Query: 62 YIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGS 121
Y++F+ E + A+ L G K+ G I + EK + ++ + R L +
Sbjct: 361 YVDFESAEDLEKALELTGLKVFGNEI-----KLEKPKGKDSKKDRDAR------TLLAKN 409
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L + +T+D L+ +FE D +++ + G+SKG +I F + DA+K E+ G E+
Sbjct: 410 LPYKVTQDELKEVFE-----DAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 464
Query: 182 AGRPMKVGTVTDRNESVG--GGPSNLDTDEMER---AGVDLGATGR-LQLMFKLAEGTGL 235
GR + + ++ +S GG ++ + E + + + AT LQ +F+ A T +
Sbjct: 465 DGRSISLYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA--THI 522
Query: 236 ELP 238
++P
Sbjct: 523 KVP 525
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 186 (70.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 50/179 (27%), Positives = 92/179 (51%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L 77
IF L I + L + FS+ G + +++ C+ +G ++ F+ E+ A+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVV-CDD-HGSRGFGFVHFETHEAAQQAITTM 158
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEP 137
NG L + V ++ + R L R +Y+ +LH ++ E L+ +F
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE----VELGARAMEFT-NIYVKNLHVDVDEQGLQDLFSR 213
Query: 138 FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FGK+ ++++M D D+G S+G+GF+ F ++A+KA +NG E++GR + VG R E
Sbjct: 214 FGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVE 271
Score = 175 (66.7 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 51/195 (26%), Positives = 93/195 (47%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF-K 66
+L + I+ L + + L++ FS GK+ V+++ + + +G ++ F K
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMR-DDSGHSRGFGFVNFQK 240
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E+ M +NG+++ G + V Q R Q R T + LY+ +
Sbjct: 241 HEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L +I ++ LR F P+G I + ++M + G SKG+GF+ F S ++A KA ++NG L
Sbjct: 301 LDDSIDDEKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIL 358
Query: 182 AGRPMKVGTVTDRNE 196
+P+ V + E
Sbjct: 359 GTKPLYVALAQRKEE 373
Score = 161 (61.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 58/199 (29%), Positives = 92/199 (46%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ TRR G AYI F+ P A+ +N + + G PI +
Sbjct: 27 LYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P L+ G G ++I +L +I L F FG I + +++ D D
Sbjct: 87 SQRD--------PGLRKSGVGN---IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-D 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE---SVGGGPSNLDTD 208
G S+G+GF+ F + + A++A +NG L R + VG R E +G
Sbjct: 135 HG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNI 193
Query: 209 EMERAGVDLGATGRLQLMF 227
++ VD+ G LQ +F
Sbjct: 194 YVKNLHVDVDEQG-LQDLF 211
Score = 141 (54.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 110 GTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADD 168
G G P+ LY+G LH ++TE ML F P G I +I++ D T RS GY +I F D
Sbjct: 5 GPGFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 169 AKKAQEQLNGFE-LAGRPMKV 188
A++A + +N FE + G+P+++
Sbjct: 65 AERALDTMN-FEVIKGQPIRI 84
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 181 (68.8 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 50/168 (29%), Positives = 81/168 (48%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S E DA +F LS +DL+++FS G+V D + T R +G +I FK+
Sbjct: 86 DASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKE 145
Query: 68 PESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
P V + +L G I + A K +P ++++G L+ T
Sbjct: 146 PSGVDKVLAQKEHRLDGRQIDPKKAMAMKK---------EP-----VKKIFVGGLNPETT 191
Query: 128 EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
E+ +R F FG+I+ I+L +DP + + +G+ FITF + KK E+
Sbjct: 192 EERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILEK 239
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 185 (70.2 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 52/195 (26%), Positives = 96/195 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L++ F G V+++T +++ + KG ++ F+
Sbjct: 137 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKGFGFVSFER 195
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG++L G I V Q + R Q R T + LY+ +
Sbjct: 196 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 255
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 256 LDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 313
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 314 ATKPLYVALAQRKEE 328
Score = 183 (69.5 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 51/190 (26%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + FS+ G + +++ C++ KG ++ F+
Sbjct: 45 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYGFVHFET 102
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L R +YI + ++
Sbjct: 103 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE----LGARAKEFT-NVYIKNFGEDM 157
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FG ++++M D ++G+SKG+GF++F +DA+KA +++NG EL G+ +
Sbjct: 158 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 216
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 217 YVGRAQKKVE 226
Score = 153 (58.9 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 45/144 (31%), Positives = 73/144 (50%)
Query: 54 TRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTG 112
TRR G AY+ F+ P A+ +N + G P+ + +Q + P+L+ G G
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD--------PSLRKSGVG 54
Query: 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172
++I +L +I L F FG I + +++ D + G SKGYGF+ F + + A++A
Sbjct: 55 N---IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 109
Query: 173 QEQLNGFELAGRPMKVGTVTDRNE 196
E++NG L R + VG R E
Sbjct: 110 IEKMNGMLLNDRKVFVGRFKSRKE 133
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 185 (70.2 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 52/195 (26%), Positives = 96/195 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L++ F G V+++T +++ + KG ++ F+
Sbjct: 150 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKGFGFVSFER 208
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG++L G I V Q + R Q R T + LY+ +
Sbjct: 209 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 268
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 269 LDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 326
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 327 ATKPLYVALAQRKEE 341
Score = 156 (60.0 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 41/149 (27%), Positives = 79/149 (53%)
Query: 49 ITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQ 107
+ C++ KG ++ F+ E+ A+ +NG L + V ++ K R L
Sbjct: 98 VVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE----LG 152
Query: 108 PRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSAD 167
R +YI + ++ ++ L+ +F FG ++++M D ++G+SKG+GF++F +
Sbjct: 153 ARAKEFT-NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHE 210
Query: 168 DAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
DA+KA +++NG EL G+ + VG + E
Sbjct: 211 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 239
Score = 148 (57.2 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 42/122 (34%), Positives = 62/122 (50%)
Query: 106 LQPRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH 164
+ P PM LY+G LH ++TE ML F P G I +I++ D T RS GY ++ F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 165 SADDAKKAQEQLNGFELAGRPMKV------------GTVTDRNESVGGGPSNLDTDEM-E 211
DA++A + +N + G+P+++ G V D N S G G + +T E E
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVVCDENGSKGYGFVHFETQEAAE 120
Query: 212 RA 213
RA
Sbjct: 121 RA 122
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 162 (62.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKV---GTVTD-RNESVGGG 201
+NG + GR ++V G +D R+ GG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 162 (62.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKV---GTVTD-RNESVGGG 201
+NG + GR ++V G +D R+ GG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 162 (62.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKV---GTVTD-RNESVGGG 201
+NG + GR ++V G +D R+ GG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 162 (62.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKV---GTVTD-RNESVGGG 201
+NG + GR ++V G +D R+ GG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 162 (62.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKV---GTVTD-RNESVGGG 201
+NG + GR ++V G +D R+ GG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 162 (62.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKV---GTVTD-RNESVGGG 201
+NG + GR ++V G +D R+ GG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 162 (62.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKV---GTVTD-RNESVGGG 201
+NG + GR ++V G +D R+ GG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 162 (62.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKV---GTVTD-RNESVGGG 201
+NG + GR ++V G +D R+ GG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 162 (62.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKV---GTVTD-RNESVGGG 201
+NG + GR ++V G +D R+ GG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 162 (62.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKV---GTVTD-RNESVGGG 201
+NG + GR ++V G +D R+ GG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 162 (62.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKV---GTVTD-RNESVGGG 201
+NG + GR ++V G +D R+ GG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 162 (62.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKV---GTVTD-RNESVGGG 201
+NG + GR ++V G +D R+ GG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 162 (62.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKV---GTVTD-RNESVGGG 201
+NG + GR ++V G +D R+ GG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 179 (68.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 53/181 (29%), Positives = 87/181 (48%)
Query: 4 AYSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYI 63
A SDD S +D +F LS + +L ++F G+V + ++ T+R +G +I
Sbjct: 32 ADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFI 91
Query: 64 EFKDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLH 123
F DP SV + +L G I P A R Q + +++IG L
Sbjct: 92 TFVDPSSVDKVLNNREHELDGKKI--DPKVAFPKRT-------QAKLVTKTKKVFIGGLS 142
Query: 124 FNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG 183
T + ++ FE +GK+++ LM D T R +G+GF+TF S + A K E ++ E+ G
Sbjct: 143 ATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCE-IHFHEING 201
Query: 184 R 184
+
Sbjct: 202 K 202
Score = 124 (48.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 40/131 (30%), Positives = 65/131 (49%)
Query: 110 GTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITF---HSA 166
G+ P +++IG L + T + LR F FG+++ +M DP T R++G+GFITF S
Sbjct: 40 GSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSV 99
Query: 167 DDAKKAQE-QLNGFELAGR---PMKVGT--VTDRNESVGGGPSNLDT-DEMERAGVDLGA 219
D +E +L+G ++ + P + VT + GG S T ++M++ G
Sbjct: 100 DKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGK 159
Query: 220 TGRLQLMFKLA 230
LMF A
Sbjct: 160 VEDAMLMFDKA 170
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 178 (67.7 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 49/168 (29%), Positives = 83/168 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S E D +F LS +DL+++FS G+V D L T R +G ++ FK+
Sbjct: 36 DASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKE 95
Query: 68 PESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
ESV M KL G ++ P +A+ + +P ++++G L +
Sbjct: 96 SESVDKVMDQKEHKLNGK--VIDPKRAK------AMKTKEP-----VKKIFVGGLSPDTP 142
Query: 128 EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
E+ +R F FG++++I+L +D T + +G+ FITF + KK E+
Sbjct: 143 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 190
Score = 128 (50.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 32/113 (28%), Positives = 58/113 (51%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+++IG L ++ T+ L+ F FG++ + L +DP TGRS+G+GF+ F ++ K +Q
Sbjct: 46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105
Query: 176 ----LNGFELAGRPMKVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQ 224
LNG + + K + + + G + DT E E+ G G ++
Sbjct: 106 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPE-EKIREYFGGFGEVE 157
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 185 (70.2 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 52/195 (26%), Positives = 96/195 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L++ F G V+++T +++ + KG ++ F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG++L G I V Q + R Q R T + LY+ +
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 301 LDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 359 ATKPLYVALAQRKEE 373
Score = 183 (69.5 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 51/190 (26%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + FS+ G + +++ C++ KG ++ F+
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYGFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L R +YI + ++
Sbjct: 148 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE----LGARAKEFT-NVYIKNFGEDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FG ++++M D ++G+SKG+GF++F +DA+KA +++NG EL G+ +
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 YVGRAQKKVE 271
Score = 171 (65.3 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 51/165 (30%), Positives = 82/165 (49%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ TRR G AY+ F+ P A+ +N + G P+ +
Sbjct: 27 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGYGF+ F + + A++A E++NG L R + VG R E
Sbjct: 135 NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 139 (54.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 34/110 (30%), Positives = 60/110 (54%)
Query: 106 LQPRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH 164
+ P PM LY+G LH ++TE ML F P G I +I++ D T RS GY ++ F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 165 SADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVG-GGPSNLDTDEMERA 213
DA++A + +N + G+P+++ + R+ S+ G N+ ++++
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKS 109
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 185 (70.2 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 52/195 (26%), Positives = 96/195 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L++ F G V+++T +++ + KG ++ F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG++L G I V Q + R Q R T + LY+ +
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 301 LDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 359 ATKPLYVALAQRKEE 373
Score = 183 (69.5 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 51/190 (26%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + FS+ G + +++ C++ KG ++ F+
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYGFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L R +YI + ++
Sbjct: 148 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE----LGARAKEFT-NVYIKNFGEDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FG ++++M D ++G+SKG+GF++F +DA+KA +++NG EL G+ +
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 YVGRAQKKVE 271
Score = 171 (65.3 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 51/165 (30%), Positives = 82/165 (49%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ TRR G AY+ F+ P A+ +N + G P+ +
Sbjct: 27 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGYGF+ F + + A++A E++NG L R + VG R E
Sbjct: 135 NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 139 (54.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 34/110 (30%), Positives = 60/110 (54%)
Query: 106 LQPRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH 164
+ P PM LY+G LH ++TE ML F P G I +I++ D T RS GY ++ F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 165 SADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVG-GGPSNLDTDEMERA 213
DA++A + +N + G+P+++ + R+ S+ G N+ ++++
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKS 109
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 185 (70.2 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 52/195 (26%), Positives = 96/195 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L++ F G V+++T +++ + KG ++ F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG++L G I V Q + R Q R T + LY+ +
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 301 LDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 359 ATKPLYVALAQRKEE 373
Score = 183 (69.5 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 51/190 (26%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + FS+ G + +++ C++ KG ++ F+
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYGFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L R +YI + ++
Sbjct: 148 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE----LGARAKEFT-NVYIKNFGEDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FG ++++M D ++G+SKG+GF++F +DA+KA +++NG EL G+ +
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 YVGRAQKKVE 271
Score = 171 (65.3 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 51/165 (30%), Positives = 82/165 (49%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ TRR G AY+ F+ P A+ +N + G P+ +
Sbjct: 27 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGYGF+ F + + A++A E++NG L R + VG R E
Sbjct: 135 NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 139 (54.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 34/110 (30%), Positives = 60/110 (54%)
Query: 106 LQPRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH 164
+ P PM LY+G LH ++TE ML F P G I +I++ D T RS GY ++ F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 165 SADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVG-GGPSNLDTDEMERA 213
DA++A + +N + G+P+++ + R+ S+ G N+ ++++
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKS 109
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 185 (70.2 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 52/195 (26%), Positives = 96/195 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L++ F G V+++T +++ + KG ++ F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG++L G I V Q + R Q R T + LY+ +
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 301 LDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 359 ATKPLYVALAQRKEE 373
Score = 183 (69.5 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 51/190 (26%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + FS+ G + +++ C++ KG ++ F+
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYGFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L R +YI + ++
Sbjct: 148 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE----LGARAKEFT-NVYIKNFGEDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FG ++++M D ++G+SKG+GF++F +DA+KA +++NG EL G+ +
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 YVGRAQKKVE 271
Score = 171 (65.3 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 51/165 (30%), Positives = 82/165 (49%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ TRR G AY+ F+ P A+ +N + G P+ +
Sbjct: 27 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGYGF+ F + + A++A E++NG L R + VG R E
Sbjct: 135 NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 139 (54.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 34/110 (30%), Positives = 60/110 (54%)
Query: 106 LQPRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH 164
+ P PM LY+G LH ++TE ML F P G I +I++ D T RS GY ++ F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 165 SADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVG-GGPSNLDTDEMERA 213
DA++A + +N + G+P+++ + R+ S+ G N+ ++++
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKS 109
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 185 (70.2 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 52/195 (26%), Positives = 96/195 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L++ F G V+++T +++ + KG ++ F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG++L G I V Q + R Q R T + LY+ +
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 301 LDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 359 ATKPLYVALAQRKEE 373
Score = 183 (69.5 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 51/190 (26%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + FS+ G + +++ C++ KG ++ F+
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYGFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L R +YI + ++
Sbjct: 148 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE----LGARAKEFT-NVYIKNFGEDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FG ++++M D ++G+SKG+GF++F +DA+KA +++NG EL G+ +
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 YVGRAQKKVE 271
Score = 171 (65.3 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 51/165 (30%), Positives = 82/165 (49%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ TRR G AY+ F+ P A+ +N + G P+ +
Sbjct: 27 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGYGF+ F + + A++A E++NG L R + VG R E
Sbjct: 135 NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 135 (52.6 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 34/110 (30%), Positives = 59/110 (53%)
Query: 106 LQPRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH 164
+ P PM LY+G LH + TE ML F P G I +I++ D T RS GY ++ F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 165 SADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVG-GGPSNLDTDEMERA 213
DA++A + +N + G+P+++ + R+ S+ G N+ ++++
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKS 109
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 185 (70.2 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 52/195 (26%), Positives = 96/195 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L++ F G V+++T +++ + KG ++ F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG++L G I V Q + R Q R T + LY+ +
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 301 LDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 359 ATKPLYVALAQRKEE 373
Score = 183 (69.5 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 51/190 (26%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + FS+ G + +++ C++ KG ++ F+
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYGFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L R +YI + ++
Sbjct: 148 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE----LGARAKEFT-NVYIKNFGEDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FG ++++M D ++G+SKG+GF++F +DA+KA +++NG EL G+ +
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 YVGRAQKKVE 271
Score = 171 (65.3 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 51/165 (30%), Positives = 82/165 (49%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ TRR G AY+ F+ P A+ +N + G P+ +
Sbjct: 27 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGYGF+ F + + A++A E++NG L R + VG R E
Sbjct: 135 NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 139 (54.0 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 34/110 (30%), Positives = 60/110 (54%)
Query: 106 LQPRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH 164
+ P PM LY+G LH ++TE ML F P G I +I++ D T RS GY ++ F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 165 SADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVG-GGPSNLDTDEMERA 213
DA++A + +N + G+P+++ + R+ S+ G N+ ++++
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKS 109
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 178 (67.7 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 41/117 (35%), Positives = 70/117 (59%)
Query: 87 IIVQPTQAEKN-RAGNTLPNL-QPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNI 144
I+ Q T + N + + P+L Q +L+IG + +++ ED LR F +G++ +
Sbjct: 10 ILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDT 69
Query: 145 QLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVGGG 201
++++D +TGRS+G+GF+TF S++ A A + L+G +L GR +KV DR GGG
Sbjct: 70 RVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTS--GGG 124
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 182 (69.1 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 56/204 (27%), Positives = 98/204 (48%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGI----AYIE 64
L+ D RT+F L I L F+ +G V ++I F+G+ A++E
Sbjct: 32 LASGSEDPRTLFVANLDPAITDEFLATLFNQIGAVMKAKII-------FEGLNDPYAFVE 84
Query: 65 FKDPESVPLAM-GLNGQKLLGIPIIV----QPTQAEKNRAGNTLPNLQPRGTGGPMRLYI 119
F D LA+ NG++LL + V +P + +NR+ +P T +++
Sbjct: 85 FSDHNQATLALQSHNGRELLEKEMHVTWAFEPREPGENRS-------KPE-TSRHFHVFV 136
Query: 120 GSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGF 179
G L I LR F FG++ +++ D +T + KGYGF+++ +DA++A +++NG
Sbjct: 137 GDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGA 196
Query: 180 ELAGRPMKVGTVTDRNESVG--GG 201
L R ++ T + + G GG
Sbjct: 197 WLGRRTIRTNWATRKPDEDGERGG 220
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 181 (68.8 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 60/182 (32%), Positives = 85/182 (46%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
+S +DA ++ L +++ L E F G V + + T + +G ++EF
Sbjct: 6 ISERNQDA-AVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 69 ESVPLAMGL-NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
E A+ + N KL G PI V A N+ NL G ++IG+L I
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAH-NK------NLD---VGA--NIFIGNLDPEID 112
Query: 128 EDMLRGIFEPFGKI-DNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
E +L F FG I ++M DPDTG SKGY FI F S D + A E +NG L RP+
Sbjct: 113 EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 172
Query: 187 KV 188
V
Sbjct: 173 TV 174
Score = 132 (51.5 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 31/100 (31%), Positives = 56/100 (56%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+Y+G L ++E +L +F G + N + D TG+ +GYGF+ F S +DA A + +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 177 NGFELAGRPMKVGTVTDRNESVGGGPS----NLDTDEMER 212
N +L G+P++V + N+++ G + NLD + E+
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEK 114
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 177 (67.4 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 49/165 (29%), Positives = 82/165 (49%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
S + D +F LS +DL ++ S G+V D + T T R +G ++ FKD E
Sbjct: 23 SKNQEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAE 82
Query: 70 SVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITED 129
SV + L KL G ++ P +A+ + +P P ++++G L +ITE+
Sbjct: 83 SVDRVLELTEHKLDGK--LIDPKRAK------AIKGKEP-----PKKVFVGGLSPDITEE 129
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
LR F +G+I++I+L D T +G+ F+TF + +K E
Sbjct: 130 QLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLE 174
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 161 (61.7 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 51/137 (37%), Positives = 67/137 (48%)
Query: 54 TRRFKGIAYIEFKDPESVPLAMGL-NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTG 112
T + +G ++EF E A+ + N KL G PI V A N+ NL G
Sbjct: 7 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAH-NK------NLD---VG 56
Query: 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKI-DNIQLMVDPDTGRSKGYGFITFHSADDAKK 171
++IG+L I E +L F FG I ++M DPDTG SKGY FI F S D +
Sbjct: 57 A--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDA 114
Query: 172 AQEQLNGFELAGRPMKV 188
A E +NG L RP+ V
Sbjct: 115 AIEAMNGQYLCNRPITV 131
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 161 (61.7 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 31/90 (34%), Positives = 54/90 (60%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L + + L+ F FG++ ++ D +TGRS+G+GF++F D A A ++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 176 LNGFELAGRPMKVGTVTDRNE----SVGGG 201
++G EL GR ++V T+R+ S GGG
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPRSSFGGG 125
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 185 (70.2 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 56/180 (31%), Positives = 94/180 (52%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK-DP 68
S +ERDART+ L ++ +L+E F ++RL++ K + KGIAYIEFK +
Sbjct: 386 SKKERDARTLLAKNLPYKVTQDELKEVFEDAA---EIRLVS--KDGKSKGIAYIEFKTEA 440
Query: 69 ESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITE 128
++ G ++ G I + T EK + + +G L + +L ++ TE
Sbjct: 441 DAEKTFEEKQGTEIDGRSISLYYT-GEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATE 499
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188
+ L+ +FE K I++ + + G+SKGY FI F S +DAK+A N E+ GR +++
Sbjct: 500 ETLQEVFE---KATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 555
Score = 152 (58.6 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 50/188 (26%), Positives = 90/188 (47%)
Query: 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLA 74
+++T+ LS L+E F ++ + N+ + KG A+IEF E A
Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEA 539
Query: 75 MG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRG 133
+ N +++ G I ++ Q + G+ QP T L++ L + TE+ L+
Sbjct: 540 LNSCNKREIEGRAIRLE-LQGPR---GSPNARSQPSKT-----LFVKGLSEDTTEETLKE 590
Query: 134 IFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193
F+ G + +++ D +TG SKG+GF+ F+S +DAK A+E + E+ G + +
Sbjct: 591 SFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 647
Query: 194 RNESVGGG 201
+ E GG
Sbjct: 648 KGEGGFGG 655
Score = 119 (46.9 bits), Expect = 0.00057, P = 0.00057
Identities = 48/183 (26%), Positives = 88/183 (48%)
Query: 62 YIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGS 121
Y++F+ E + A+ L G K+ G I + EK + ++ R L +
Sbjct: 351 YVDFESAEDLEKALELTGLKVFGNEI-----KLEKPKGKDSKKERDAR------TLLAKN 399
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L + +T+D L+ +FE +I +V D G+SKG +I F + DA+K E+ G E+
Sbjct: 400 LPYKVTQDELKEVFEDAAEIR----LVSKD-GKSKGIAYIEFKTEADAEKTFEEKQGTEI 454
Query: 182 AGRPMKVGTVTDR--NESVGGGPSNLDTDEMER---AGVDLGATGR-LQLMFKLAEGTGL 235
GR + + ++ N+ GG ++ + E + + + AT LQ +F+ A T +
Sbjct: 455 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA--TFI 512
Query: 236 ELP 238
++P
Sbjct: 513 KVP 515
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 185 (70.2 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 56/180 (31%), Positives = 94/180 (52%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK-DP 68
S +ERDART+ L ++ +L+E F ++RL++ K + KGIAYIEFK +
Sbjct: 387 SKKERDARTLLAKNLPYKVTQDELKEVFEDAA---EIRLVS--KDGKSKGIAYIEFKTEA 441
Query: 69 ESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITE 128
++ G ++ G I + T EK + + +G L + +L ++ TE
Sbjct: 442 DAEKTFEEKQGTEIDGRSISLYYT-GEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATE 500
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188
+ L+ +FE K I++ + + G+SKGY FI F S +DAK+A N E+ GR +++
Sbjct: 501 ETLQEVFE---KATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 556
Score = 152 (58.6 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 50/188 (26%), Positives = 90/188 (47%)
Query: 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLA 74
+++T+ LS L+E F ++ + N+ + KG A+IEF E A
Sbjct: 485 ESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEA 540
Query: 75 MG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRG 133
+ N +++ G I ++ Q + G+ QP T L++ L + TE+ L+
Sbjct: 541 LNSCNKREIEGRAIRLE-LQGPR---GSPNARSQPSKT-----LFVKGLSEDTTEETLKE 591
Query: 134 IFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193
F+ G + +++ D +TG SKG+GF+ F+S +DAK A+E + E+ G + +
Sbjct: 592 SFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 648
Query: 194 RNESVGGG 201
+ E GG
Sbjct: 649 KGEGGFGG 656
Score = 119 (46.9 bits), Expect = 0.00057, P = 0.00057
Identities = 48/183 (26%), Positives = 88/183 (48%)
Query: 62 YIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGS 121
Y++F+ E + A+ L G K+ G I + EK + ++ R L +
Sbjct: 352 YVDFESAEDLEKALELTGLKVFGNEI-----KLEKPKGKDSKKERDAR------TLLAKN 400
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L + +T+D L+ +FE +I +V D G+SKG +I F + DA+K E+ G E+
Sbjct: 401 LPYKVTQDELKEVFEDAAEIR----LVSKD-GKSKGIAYIEFKTEADAEKTFEEKQGTEI 455
Query: 182 AGRPMKVGTVTDR--NESVGGGPSNLDTDEMER---AGVDLGATGR-LQLMFKLAEGTGL 235
GR + + ++ N+ GG ++ + E + + + AT LQ +F+ A T +
Sbjct: 456 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA--TFI 513
Query: 236 ELP 238
++P
Sbjct: 514 KVP 516
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 185 (70.2 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 56/180 (31%), Positives = 94/180 (52%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK-DP 68
S +ERDART+ L ++ +L+E F ++RL++ K + KGIAYIEFK +
Sbjct: 388 SKKERDARTLLAKNLPYKVTQDELKEVFEDAA---EIRLVS--KDGKSKGIAYIEFKTEA 442
Query: 69 ESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITE 128
++ G ++ G I + T EK + + +G L + +L ++ TE
Sbjct: 443 DAEKTFEEKQGTEIDGRSISLYYT-GEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATE 501
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188
+ L+ +FE K I++ + + G+SKGY FI F S +DAK+A N E+ GR +++
Sbjct: 502 ETLQEVFE---KATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 557
Score = 152 (58.6 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 50/188 (26%), Positives = 90/188 (47%)
Query: 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLA 74
+++T+ LS L+E F ++ + N+ + KG A+IEF E A
Sbjct: 486 ESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEA 541
Query: 75 MG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRG 133
+ N +++ G I ++ Q + G+ QP T L++ L + TE+ L+
Sbjct: 542 LNSCNKREIEGRAIRLE-LQGPR---GSPNARSQPSKT-----LFVKGLSEDTTEETLKE 592
Query: 134 IFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193
F+ G + +++ D +TG SKG+GF+ F+S +DAK A+E + E+ G + +
Sbjct: 593 SFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 649
Query: 194 RNESVGGG 201
+ E GG
Sbjct: 650 KGEGGFGG 657
Score = 119 (46.9 bits), Expect = 0.00057, P = 0.00057
Identities = 48/183 (26%), Positives = 88/183 (48%)
Query: 62 YIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGS 121
Y++F+ E + A+ L G K+ G I + EK + ++ R L +
Sbjct: 353 YVDFESAEDLEKALELTGLKVFGNEI-----KLEKPKGKDSKKERDAR------TLLAKN 401
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L + +T+D L+ +FE +I +V D G+SKG +I F + DA+K E+ G E+
Sbjct: 402 LPYKVTQDELKEVFEDAAEIR----LVSKD-GKSKGIAYIEFKTEADAEKTFEEKQGTEI 456
Query: 182 AGRPMKVGTVTDR--NESVGGGPSNLDTDEMER---AGVDLGATGR-LQLMFKLAEGTGL 235
GR + + ++ N+ GG ++ + E + + + AT LQ +F+ A T +
Sbjct: 457 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA--TFI 514
Query: 236 ELP 238
++P
Sbjct: 515 KVP 517
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 179 (68.1 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 46/156 (29%), Positives = 75/156 (48%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLN 78
+F LS + L E+F G+V++ ++ T+R +G ++ F D V + +
Sbjct: 2 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 61
Query: 79 GQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPF 138
+L I P A RA QP+ ++++G L N T + ++ FE F
Sbjct: 62 RHELDSKTI--DPKVAFPRRA-------QPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQF 112
Query: 139 GKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
GK+D+ LM D T R +G+GF+TF S D +K E
Sbjct: 113 GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 148
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 183 (69.5 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 54/188 (28%), Positives = 93/188 (49%)
Query: 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPL 73
+D+ ++ L + + L FS G V V ++ + R +G ++ F +PE+
Sbjct: 199 QDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSV-VVMRDGMGRSRGFGFVNFCNPENAKK 257
Query: 74 AM-GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGP-MR---LYIGSLHFNITE 128
AM L G +L + V + R P MR LY+ +L ++ E
Sbjct: 258 AMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNE 317
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188
LR IF +G+I + ++M + GRSKG+GF+ F + +++K+A+ LNGF + G+P+ V
Sbjct: 318 TRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVV 376
Query: 189 GTVTDRNE 196
V +R E
Sbjct: 377 -RVAERKE 383
Score = 175 (66.7 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 54/202 (26%), Positives = 94/202 (46%)
Query: 1 MRPAYSD-DLSPEERDART----IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTR 55
MR +S DL+ R RT ++ L I + LE F G + +++ N
Sbjct: 92 MRIMWSQRDLAYRRR-TRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENG-- 148
Query: 56 RFKGIAYIEFKDPES-VPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGP 114
+ KG +++F +S V L+G + G + V + RA G
Sbjct: 149 QSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMA-------GNQDS 201
Query: 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
+Y+ +L +T+D L +F +G + ++ +M D GRS+G+GF+ F + ++AKKA E
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAME 260
Query: 175 QLNGFELAGRPMKVGTVTDRNE 196
L G +L + + VG ++E
Sbjct: 261 SLCGLQLGSKKLFVGKALKKDE 282
Score = 142 (55.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 52/180 (28%), Positives = 84/180 (46%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG- 76
+++ LS + +DL + FS V V L + T + AYI F P S AM
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 77 LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFE 136
LN L G + + +Q ++ A + R G LY+ +L +IT L +F
Sbjct: 82 LNHSDLKGKAMRIMWSQ--RDLA------YRRRTRTGFANLYVKNLDSSITSSCLERMFC 133
Query: 137 PFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
PFG I + V + G+SKG+GF+ F + A A+ L+G + G+ + V +++E
Sbjct: 134 PFGSI--LSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDE 191
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 184 (69.8 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 56/180 (31%), Positives = 87/180 (48%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG- 76
+++ +L + L E F+S+G V +R+ TRR G AY+ F + E A+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 77 LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFE 136
LN + G P + +Q + P+L+ GTG ++I +L I L F
Sbjct: 141 LNYTLIKGRPCRIMWSQRD--------PSLRKMGTGN---VFIKNLDPAIDNKALHDTFS 189
Query: 137 PFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FGKI + ++ VD + G +KGYGF+ F S + A A E +NG L + + VG R E
Sbjct: 190 AFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRE 248
Score = 158 (60.7 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 42/184 (22%), Positives = 88/184 (47%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L 77
++ L I ++ + F G++ + L+ ++ + +G ++ + + E A+ L
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVK-DQNDKPRGFGFVNYANHECAQKAVDEL 321
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPN-----LQPRGTGGPMRLYIGSLHFNITEDMLR 132
N ++ G + V Q + R L+ + L+I +L + ++ L+
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 133 GIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT 192
F FG I + ++M D + G+SKG+GF+ + + ++A KA ++N LAG+P+ V +
Sbjct: 382 AEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA-LA 439
Query: 193 DRNE 196
R E
Sbjct: 440 QRKE 443
Score = 158 (60.7 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 48/190 (25%), Positives = 89/190 (46%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + +F L I + L + FS+ GK+ + + ++ KG ++ F
Sbjct: 159 DPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCK-VAVDELGNAKGYGFVHFDS 217
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
ES A+ +NG L + V + + R + L+ T +YI +L I
Sbjct: 218 VESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSK-VEALKANFTN----VYIKNLDTEI 272
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
TE +F FG+I ++ L+ D + + +G+GF+ + + + A+KA ++LN E G+ +
Sbjct: 273 TEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKL 331
Query: 187 KVGTVTDRNE 196
VG ++E
Sbjct: 332 YVGRAQKKHE 341
Score = 144 (55.7 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 108 PRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSA 166
P GT LY+G L ++TE ML +F G + +I++ D T RS GY ++ FH+
Sbjct: 72 PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNM 131
Query: 167 DDAKKAQEQLNGFELAGRPMKV 188
+D +KA ++LN + GRP ++
Sbjct: 132 EDGEKALDELNYTLIKGRPCRI 153
>UNIPROTKB|F1NF69 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00577406 Ensembl:ENSGALT00000007806
ArrayExpress:F1NF69 Uniprot:F1NF69
Length = 772
Score = 185 (70.2 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 51/182 (28%), Positives = 93/182 (51%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRD--LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
L +D T+F LS + + L+E F S G+V VR + NK F+G Y+EFK
Sbjct: 580 LHDSSKDNITVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNKGT-FRGYCYVEFK 638
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D +S A+G++ + + G P+ V P +KN+ + + T +L+I L F+
Sbjct: 639 DEKSALQALGMDRKVVEGRPMFVSPC-VDKNKNPD-FKVFRYSTTLEKHKLFISGLPFSC 696
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
T++ L I + G + +I+L+ + G+ KG ++ + + A +A +++G + +
Sbjct: 697 TKEELEDICKAHGNVKDIRLVTNR-AGKPKGLAYVEYENEAQASQAVLKMDGLTIKEHVI 755
Query: 187 KV 188
KV
Sbjct: 756 KV 757
>DICTYBASE|DDB_G0286395 [details] [associations]
symbol:u2af2 "U2 snRNP auxiliary factor large
subunit" species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008187 "poly-pyrimidine tract binding"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0286395 GenomeReviews:CM000153_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000085 GO:GO:0000398
GO:GO:0005686 GO:GO:0008187 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_637725.1 ProteinModelPortal:Q54LV5
SMR:Q54LV5 EnsemblProtists:DDB0233353 GeneID:8625590
KEGG:ddi:DDB_G0286395 InParanoid:Q54LV5 OMA:DELMDND Uniprot:Q54LV5
Length = 671
Score = 184 (69.8 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 53/206 (25%), Positives = 98/206 (47%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVR------LITCNKTRRFKGIAYI 63
+P+++ +R I+ + I +L EFF++ ++ ++ C + K A+I
Sbjct: 261 TPQKKQSRRIYVGNIPPGISDSELMEFFNAAVLAANLNTKPGPPVVFC-QINAPKCFAFI 319
Query: 64 EFKDPESVPLAMGLNGQKLLGIPI-IVQPTQAEK---NRAGNT--LPNLQPRGT-GGPMR 116
EF+ PE AM +G L + I +P + N GN LP++ P +
Sbjct: 320 EFRSPEEATNAMRFDGISLKNFTLKIRRPKDYQSTSDNTGGNASLLPSIVPTNVPDSENK 379
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+Y+G L N++E+ ++ + +GK+ L+ D +TG SKG+ F + ++ A +L
Sbjct: 380 IYVGGLPSNLSEEQVKSLLSAYGKLKAFNLVKDTNTGVSKGFAFCEYQDSEVTDVACSKL 439
Query: 177 NGFELAGRPMKVGTVTDRNESVGGGP 202
NG LA + + V + S+G P
Sbjct: 440 NGIPLADKTLVV-----QRASIGSKP 460
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 179 (68.1 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 55/180 (30%), Positives = 94/180 (52%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK-DP 68
S ++RDART+ L ++ +L+E F ++RL++ K + KGIAYIEFK +
Sbjct: 40 SKKDRDARTLLAKNLPYKVTQDELKEVFEDAV---EIRLVS--KDGKSKGIAYIEFKTEA 94
Query: 69 ESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITE 128
++ G ++ G I + T EK + + +G L + +L ++ TE
Sbjct: 95 DAEKTLEEKQGTEIDGRSISLYYT-GEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATE 153
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188
+ L+ +FE K I++ + + G+SKGY FI F S +DAK+A N E+ GR +++
Sbjct: 154 ETLQEVFE---KATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 209
Score = 149 (57.5 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 50/188 (26%), Positives = 89/188 (47%)
Query: 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLA 74
+++T+ L+ L+E F ++ + N+ + KG A+IEF E A
Sbjct: 138 ESKTLVLSNLAYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEA 193
Query: 75 MG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRG 133
+ N +++ G I ++ Q + G+ QP T L++ L TE+ L+
Sbjct: 194 LNSCNKREIEGRAIRLE-LQGPR---GSPNARSQPSKT-----LFVKGLSEETTEETLKE 244
Query: 134 IFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193
F+ G I +++ D +TG SKG+GF+ F+S +DAK A+E + E+ G + +
Sbjct: 245 SFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 301
Query: 194 RNESVGGG 201
+ E GG
Sbjct: 302 KGEGGFGG 309
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 46/183 (25%), Positives = 89/183 (48%)
Query: 62 YIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGS 121
Y++F+ E + A+ L G K+ G I + EK + ++ + R L +
Sbjct: 5 YVDFESAEDLEKALELTGLKVFGNEI-----KLEKPKGKDSKKDRDAR------TLLAKN 53
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L + +T+D L+ +FE D +++ + G+SKG +I F + DA+K E+ G E+
Sbjct: 54 LPYKVTQDELKEVFE-----DAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 108
Query: 182 AGRPMKVGTVTDR--NESVGGGPSNLDTDEMER---AGVDLGATGR-LQLMFKLAEGTGL 235
GR + + ++ N+ GG ++ + E + + + AT LQ +F+ A T +
Sbjct: 109 DGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKA--TFI 166
Query: 236 ELP 238
++P
Sbjct: 167 KVP 169
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 183 (69.5 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 51/190 (26%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + FS+ G + +++ C++ KG ++ F+
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYGFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L R +YI + ++
Sbjct: 148 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE----LGARAKEFT-NVYIKNFGEDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FG ++++M D ++G+SKG+GF++F +DA+KA +++NG EL G+ +
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 YVGRAQKKVE 271
Score = 171 (65.3 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 51/165 (30%), Positives = 82/165 (49%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ TRR G AY+ F+ P A+ +N + G P+ +
Sbjct: 27 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGYGF+ F + + A++A E++NG L R + VG R E
Sbjct: 135 NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 141 (54.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 42/162 (25%), Positives = 78/162 (48%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L++ F G V+++T +++ + KG ++ F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG++L G I V Q + R Q R T + LY+ +
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITF 163
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F
Sbjct: 301 LDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCF 340
Score = 139 (54.0 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 34/110 (30%), Positives = 60/110 (54%)
Query: 106 LQPRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH 164
+ P PM LY+G LH ++TE ML F P G I +I++ D T RS GY ++ F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 165 SADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVG-GGPSNLDTDEMERA 213
DA++A + +N + G+P+++ + R+ S+ G N+ ++++
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKS 109
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 172 (65.6 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 47/174 (27%), Positives = 89/174 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + S+ G + ++ C++ KG ++ F+
Sbjct: 90 DPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVV-CDENGS-KGYGFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L G + V ++ K R L R P +YI + ++
Sbjct: 148 HEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE----LGARAKEFP-NVYIKNFGEDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFE 180
++ L+ +F FG ++++M D ++G+SKG+GF++F +DA+KA +++NG E
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Score = 140 (54.3 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 45/165 (27%), Positives = 78/165 (47%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ T AY+ F+ + A+ +N + G P+ +
Sbjct: 27 LYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G +++ +L +I L FG I + ++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGYGF+ F + + A++A +++NG L GR + VG R E
Sbjct: 135 NG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKE 178
Score = 123 (48.4 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
LY+G LH ++TE ML F P G I +I++ D T S Y ++ F DA+ A + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 177 NGFELAGRPMKVGTVTDRNESVG-GGPSNLDTDEMERA 213
N + G+P+++ + R+ S+ G N+ ++++
Sbjct: 73 NFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFVKNLDKS 109
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 160 (61.4 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 31/92 (33%), Positives = 54/92 (58%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L+F TE+ L +F +G++ + ++ D ++ RS+G+GF+TF + +DAK A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 176 LNGFELAGRPMKVGTV----TDRNESVGGGPS 203
+NG + GR ++V DR GG S
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSNDRRGGYRGGSS 98
>UNIPROTKB|F1NUL7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00819201 Ensembl:ENSGALT00000038897
ArrayExpress:F1NUL7 Uniprot:F1NUL7
Length = 857
Score = 185 (70.2 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 51/182 (28%), Positives = 93/182 (51%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRD--LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
L +D T+F LS + + L+E F S G+V VR + NK F+G Y+EFK
Sbjct: 590 LHDSSKDNITVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNKGT-FRGYCYVEFK 648
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
D +S A+G++ + + G P+ V P +KN+ + + T +L+I L F+
Sbjct: 649 DEKSALQALGMDRKVVEGRPMFVSPC-VDKNKNPD-FKVFRYSTTLEKHKLFISGLPFSC 706
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
T++ L I + G + +I+L+ + G+ KG ++ + + A +A +++G + +
Sbjct: 707 TKEELEDICKAHGNVKDIRLVTNR-AGKPKGLAYVEYENEAQASQAVLKMDGLTIKEHVI 765
Query: 187 KV 188
KV
Sbjct: 766 KV 767
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 175 (66.7 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 49/166 (29%), Positives = 80/166 (48%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
S E DA +F LS +DL+++F+ G+V D + T R +G +I FKD
Sbjct: 68 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSS 127
Query: 70 SVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITED 129
SV + +L G ++ P +A + P ++++G L+ TE+
Sbjct: 128 SVEKVLDQKEHRLDGR--VIDPKKAMAMKK-------DP-----VKKIFVGGLNPEATEE 173
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+R F FG+I+ I+L +DP + +G+ FITF D KK E+
Sbjct: 174 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 175 (66.7 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 49/166 (29%), Positives = 80/166 (48%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
S E DA +F LS +DL+++F+ G+V D + T R +G +I FKD
Sbjct: 68 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSS 127
Query: 70 SVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITED 129
SV + +L G ++ P +A + P ++++G L+ TE+
Sbjct: 128 SVEKVLDQKEHRLDGR--VIDPKKAMAMKK-------DP-----VKKIFVGGLNPEATEE 173
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+R F FG+I+ I+L +DP + +G+ FITF D KK E+
Sbjct: 174 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 176 (67.0 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 49/165 (29%), Positives = 82/165 (49%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
S ++D +F LS +DL E+ S G+V D + T T R +G ++ FKD
Sbjct: 23 SKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAA 82
Query: 70 SVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITED 129
SV + L KL G ++ P +A+ L +P P ++++G L + +E+
Sbjct: 83 SVEKVLELKEHKLDGK--LIDPKRAK------ALKGKEP-----PKKVFVGGLSPDTSEE 129
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
++ F FG+I+NI+L +D T +G+ FIT+ + KK E
Sbjct: 130 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 176 (67.0 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 49/165 (29%), Positives = 82/165 (49%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
S ++D +F LS +DL E+ S G+V D + T T R +G ++ FKD
Sbjct: 22 SKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAA 81
Query: 70 SVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITED 129
SV + L KL G ++ P +A+ L +P P ++++G L + +E+
Sbjct: 82 SVDKVLELKEHKLDGK--LIDPKRAK------ALKGKEP-----PKKVFVGGLSPDTSEE 128
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
++ F FG+I+NI+L +D T +G+ FIT+ + KK E
Sbjct: 129 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 183 (69.5 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 50/190 (26%), Positives = 99/190 (52%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I ++ L + FS+ G + +++ C++ KG ++ F+
Sbjct: 90 DPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVV-CDENGS-KGYGFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E A+ +NG L + V ++ ++R L R +YI +L ++
Sbjct: 148 QEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAE----LGARAKEFT-NVYIKNLGEDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F FG ++++M D ++G+SKG+GF++F +DA+KA +++NG +L G+ +
Sbjct: 203 DDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 YVGRAQKKVE 271
Score = 173 (66.0 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 53/205 (25%), Positives = 101/205 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ L + + L++ FS G V+++T +++ + KG ++ F+
Sbjct: 182 ELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMT-DESGKSKGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAE-------KNRAGNTL---PNLQ--PRGTG-- 112
E A+ +NG+ L G I V Q + K++ G P ++ P+
Sbjct: 241 HEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVR 300
Query: 113 -GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKK 171
+ LY+ +L I ++ LR F PFG I + ++ ++ GRSKG+GF+ F S ++A K
Sbjct: 301 CQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATK 358
Query: 172 AQEQLNGFELAGRPMKVGTVTDRNE 196
A ++NG +A +P+ V + E
Sbjct: 359 AVTEMNGRIVATKPLYVALAQRKEE 383
Score = 168 (64.2 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 56/199 (28%), Positives = 94/199 (47%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ TRR G A + F+ E A+ +N + G P+ +
Sbjct: 27 LYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTMNFDVIKGKPVRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G +++ +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVT---DRNESVGGGPSNLDTD 208
G SKGYGF+ F + ++A++A E++NG L R + VG DR +G
Sbjct: 135 NG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNV 193
Query: 209 EMERAGVDLGATGRLQLMF 227
++ G D+ RLQ +F
Sbjct: 194 YIKNLGEDMDDE-RLQDLF 211
Score = 138 (53.6 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 32/98 (32%), Positives = 56/98 (57%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
LY+G LH ++TE ML F P G I +I++ D T RS GY + F +DA++A + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 177 NGFELAGRPMKVGTVTDRNESVG-GGPSNLDTDEMERA 213
N + G+P+++ + R+ S+ G N+ ++R+
Sbjct: 73 NFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFVKNLDRS 109
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 159 (61.0 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 37/93 (39%), Positives = 53/93 (56%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++ L T+ LR +F PFG+I +L+ D +T R KG+GFITF S DDA+KA +
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 176 LNGFELAGRPMKVGTVTDRNESVGGGPSNLDTD 208
L+G + GR + V + E G SN D
Sbjct: 68 LDGKIVDGRLIFVEVAKNAEEVRAGINSNKAED 100
Score = 106 (42.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 30/100 (30%), Positives = 53/100 (53%)
Query: 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVP 72
+R + +F +LS + L + FS G++++ RLI ++T+R KG +I F +
Sbjct: 3 KRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDAR 62
Query: 73 LAM-GLNGQKLLGIPIIVQPTQ-AEKNRAGNTLPNLQPRG 110
A+ L+G+ + G I V+ + AE+ RAG + RG
Sbjct: 63 KALKSLDGKIVDGRLIFVEVAKNAEEVRAGINSNKAEDRG 102
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 159 (61.0 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKV 188
+NG + GR ++V
Sbjct: 67 MNGKSVDGRQIRV 79
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 175 (66.7 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 49/166 (29%), Positives = 80/166 (48%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
S E DA +F LS +DL+++F+ G+V D + T R +G +I FKD
Sbjct: 81 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSS 140
Query: 70 SVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITED 129
SV + +L G ++ P +A + P ++++G L+ TE+
Sbjct: 141 SVEKVLDQKEHRLDGR--VIDPKKAMAMKK-------DP-----VKKIFVGGLNPEATEE 186
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+R F FG+I+ I+L +DP + +G+ FITF D KK E+
Sbjct: 187 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 232
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 180 (68.4 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 51/191 (26%), Positives = 95/191 (49%)
Query: 6 SDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF 65
+++ SP R+ +F L+ L ++F G+V D ++ + T R +G ++ F
Sbjct: 152 AEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTF 211
Query: 66 KDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFN 125
K+P+ V M L G I+ P +A +P + T ++++G + +
Sbjct: 212 KNPKCVNEVMSKE-HHLDGK--IIDPKRA--------IPREEQEKTA---KMFVGGVPGD 257
Query: 126 ITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH--SADDAKKAQEQLNGFELAG 183
TE+ R F FG++ + LM+D DTGR +G+GF+T+ SA +A +Q + + G
Sbjct: 258 CTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYIT---IHG 314
Query: 184 RPMKVGTVTDR 194
+P++V T +
Sbjct: 315 KPVEVKRATPK 325
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 182 (69.1 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 49/195 (25%), Positives = 95/195 (48%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
++ ++ ++ + + L+E F G +R++T + + + KG ++ F+
Sbjct: 182 EMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMT-DDSGKSKGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG+++ G + V Q + R Q R T + LY+ +
Sbjct: 241 HEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L + ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 301 LDDGLDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 359 ATKPLYVALAQRKEE 373
Score = 179 (68.1 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 50/190 (26%), Positives = 97/190 (51%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + FS+ G + +++ C++ KG ++ F+
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYGFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R + R +YI + ++
Sbjct: 148 HEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE----MGARAKEFT-NVYIKNFGEDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ IF +G +I++M D D+G+SKG+GF++F +DA++A +++NG E+ G+ +
Sbjct: 203 DDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQV 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 YVGRAQKKGE 271
Score = 172 (65.6 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 51/165 (30%), Positives = 82/165 (49%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ TRR G AY+ F+ P A+ +N + G P+ +
Sbjct: 27 LYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGYGF+ F + + A++A E++NG L R + VG R E
Sbjct: 135 NG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 142 (55.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 35/110 (31%), Positives = 60/110 (54%)
Query: 106 LQPRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH 164
+ P PM LY+G LH ++TE ML F P G I +I++ D T RS GY ++ F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ 60
Query: 165 SADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVG-GGPSNLDTDEMERA 213
DA++A + +N + GRP+++ + R+ S+ G N+ ++++
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRI-MWSQRDPSLRKSGVGNIFIKNLDKS 109
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 176 (67.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 49/168 (29%), Positives = 82/168 (48%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S E D +F LS +DL+++FS G V D L T R +G ++ FK+
Sbjct: 67 DASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKE 126
Query: 68 PESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
ESV M KL G ++ P +A+ + +P ++++G L +
Sbjct: 127 SESVDKVMDQKEHKLNGK--VIDPKRAK------AMKTKEP-----VKKIFVGGLSPDTP 173
Query: 128 EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
E+ +R F FG++++I+L +D T + +G+ FITF + KK E+
Sbjct: 174 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 221
Score = 126 (49.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 32/113 (28%), Positives = 57/113 (50%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+++IG L ++ T+ L+ F FG + + L +DP TGRS+G+GF+ F ++ K +Q
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 176 ----LNGFELAGRPMKVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQ 224
LNG + + K + + + G + DT E E+ G G ++
Sbjct: 137 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPE-EKIREYFGGFGEVE 188
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 158 (60.7 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 42/165 (25%), Positives = 77/165 (46%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D + PE+ R +F LS L F G + D ++ T+R +G ++ +
Sbjct: 2 DSMEPEQ--VRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 59
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E V AM K+ G +V+P +A ++ + Q G M++++G++ +
Sbjct: 60 TVEEVDAAMNARPHKVDGR--VVEPKRAV------SIEDSQRPGAYLNMKIFVGAIKEDT 111
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKK 171
E LR F +GK + I+++ D +G+ +G+ F+TF D K
Sbjct: 112 EEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDK 156
Score = 126 (49.4 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L+IG L F T++ LR FE +G + + +M DP+T RS+G+GF+T+ + ++ A
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 67
Query: 176 LNGFELAGRPMKV-GTVTDRNESV 198
+N RP KV G V + +V
Sbjct: 68 MNA-----RPHKVDGRVVEPKRAV 86
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 158 (60.7 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 51/180 (28%), Positives = 82/180 (45%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG- 76
+++ L + L E FS G + +RL TRR G AY+ ++ P A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 77 LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFE 136
LN + G P+ + +Q + P+L+ G G ++I +L I L IF
Sbjct: 63 LNFDVIKGRPVRIMWSQRD--------PSLRKSGVGN---VFIKNLGKTIDNKALYNIFS 111
Query: 137 PFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FG I + ++ D + G KGYGF+ F + A++A + +NG L R + VG E
Sbjct: 112 AFGNILSCKVACD-EKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKE 169
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 158 (60.7 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 40/141 (28%), Positives = 74/141 (52%)
Query: 24 LSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKL 82
LS+ + + + FS +G ++ ++I T ++EF + A+ +NG+K+
Sbjct: 6 LSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHAAAALAAMNGRKI 63
Query: 83 LGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKID 142
+G + V N A T P+ Q + T +++G L IT + ++ F PFG+I
Sbjct: 64 MGKEVKV-------NWA--TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS 114
Query: 143 NIQLMVDPDTGRSKGYGFITF 163
+ +++ D TG+SKGYGF++F
Sbjct: 115 DARVVKDMATGKSKGYGFVSF 135
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 158 (60.7 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 37/108 (34%), Positives = 52/108 (48%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L+FN E L F FG I + ++ D +T RS+G+GFITF + + A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 176 LNGFELAGRPMKVGTVTDRNESVGGGPSNLDTDEMERAGVDLG-ATGR 222
+NG L GR ++V GG R G D G GR
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGAFGARGRGYSRGGGDQGYGNGR 114
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 158 (60.7 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + +DAK A
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 176 LNGFELAGRPMKVGTV----TDRNESVGGGPS 203
+NG + GR ++V DR GG S
Sbjct: 67 MNGKTVDGRQIRVDQAGKSSNDRRGGYRGGSS 98
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 158 (60.7 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 51/180 (28%), Positives = 82/180 (45%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG- 76
+++ L + L E FS G + +RL TRR G AY+ ++ P A+
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 77 LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFE 136
+N + G P+ + +Q + P+L+ G G ++I +L I L IF
Sbjct: 63 MNFDVINGRPVRIMWSQRD--------PSLRKSGVGN---VFIKNLGKTIDNKALYNIFS 111
Query: 137 PFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FG I + ++ D + G KGYGF+ F + A++A + LNG L R + VG E
Sbjct: 112 AFGNILSCKVACD-EKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKE 169
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 176 (67.0 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 49/165 (29%), Positives = 82/165 (49%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
S ++D +F LS +DL E+ S G+V D + T T R +G ++ FKD
Sbjct: 59 SKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAA 118
Query: 70 SVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITED 129
SV + L KL G ++ P +A+ L +P P ++++G L + +E+
Sbjct: 119 SVEKVLELKEHKLDGK--LIDPKRAK------ALKGKEP-----PKKVFVGGLSPDTSEE 165
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
++ F FG+I+NI+L +D T +G+ FIT+ + KK E
Sbjct: 166 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 210
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 181 (68.8 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 49/179 (27%), Positives = 90/179 (50%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L 77
IF L I + L + FS+ G + +++ R G ++ F+ E+ A+ +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSR--GFGFVHFETHEAAQKAINTM 158
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEP 137
NG L + V ++ + R L R G +Y+ +L ++ E L+ +F
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAE----LGARALGFT-NIYVKNLRVDMDEQGLQDLFSQ 213
Query: 138 FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FGK ++++M D + G+S+G+GFI F ++A+KA + +NG E++G+ + VG R E
Sbjct: 214 FGKTQSVKVMRDSN-GQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAE 271
Score = 169 (64.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 50/186 (26%), Positives = 93/186 (50%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L 77
I+ L + + L++ FS GK + V+++ + + +G +I F+ E A+ +
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMR-DSNGQSRGFGFINFEKHEEAQKAVDHM 251
Query: 78 NGQKLLGIPIIVQPTQ--AE-----KNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDM 130
NG+++ G + V Q AE K R Q R G + LY+ +L +I +D
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQG--VNLYVKNLDDSINDDR 309
Query: 131 LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190
L+ +F +G I + ++M + + SKG+GF+ F S ++A KA ++NG + +P+ V
Sbjct: 310 LKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 191 VTDRNE 196
+ E
Sbjct: 368 AQRKEE 373
Score = 152 (58.6 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 55/199 (27%), Positives = 92/199 (46%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS +G + +R+ TRR G AYI F+ P A+ +N + + G PI +
Sbjct: 27 LYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMIKGQPIRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+ + P L+ G G ++I +L +I L F FG I + +++ + +
Sbjct: 87 SHRD--------PGLRRSGMGN---IFIKNLENSIDNKALYDTFSTFGSILSSKVVYN-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE---SVGGGPSNLDTD 208
G S+G+GF+ F + + A+KA +NG L R + VG R + +G
Sbjct: 135 HG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNI 193
Query: 209 EMERAGVDLGATGRLQLMF 227
++ VD+ G LQ +F
Sbjct: 194 YVKNLRVDMDEQG-LQDLF 211
Score = 144 (55.7 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 106 LQPRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH 164
+ RG G + LY+G LH ++TE ML +F P G I +I++ D T RS GY +I F
Sbjct: 1 MDTRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQ 60
Query: 165 SADDAKKAQEQLNGFELA-GRPMKV 188
DA++A + +N FE+ G+P+++
Sbjct: 61 QPADAERALDTMN-FEMIKGQPIRI 84
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 177 (67.4 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 50/167 (29%), Positives = 76/167 (45%)
Query: 10 SPEE--RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
SP E D +F LS + L ++F G + + ++ TRR +G ++ F D
Sbjct: 20 SPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSD 79
Query: 68 PESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
P SV + +L G V P A RA P + R ++++G L T
Sbjct: 80 PNSVDKVLTQGTHELDGKK--VDPKVAFPRRAH---PKMVTR----TKKIFVGGLSAPTT 130
Query: 128 EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
+ ++ FE FG I++ LM D T R +G+GF+TF S D K E
Sbjct: 131 LEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Score = 124 (48.7 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 31/97 (31%), Positives = 47/97 (48%)
Query: 88 IVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLM 147
I Q Q ++ G P+ P G +++IG L + + + LR F +G I +M
Sbjct: 5 IEQQQQQQQVELGPCSPSEVPNDPG---KMFIGGLSWQTSPESLRDYFGRYGDISEAMVM 61
Query: 148 VDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGR 184
DP T RS+G+GF+TF + K Q EL G+
Sbjct: 62 KDPTTRRSRGFGFVTFSDPNSVDKVLTQ-GTHELDGK 97
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 182 (69.1 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 55/180 (30%), Positives = 95/180 (52%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK-DP 68
S ++RDART+ L ++ +L+E F ++RL++ K + KGIAYIEFK +
Sbjct: 391 SKKDRDARTLLAKNLPYKVTQDELKEVFEDAV---EIRLVS--KDGKSKGIAYIEFKTEA 445
Query: 69 ESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITE 128
++ G ++ G I + T EK ++ + +G L + +L ++ TE
Sbjct: 446 DAEKTFEEKQGTEIDGRSISLYYT-GEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATE 504
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188
+ L+ +FE K I++ + + G+SKGY FI F S +DAK+A N E+ GR +++
Sbjct: 505 ETLQEVFE---KATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 560
Score = 152 (58.6 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 50/188 (26%), Positives = 90/188 (47%)
Query: 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLA 74
+++T+ LS L+E F ++ + N+ + KG A+IEF E A
Sbjct: 489 ESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEA 544
Query: 75 MG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRG 133
+ N +++ G I ++ Q + G+ QP T L++ L + TE+ L+
Sbjct: 545 LNSCNKREIEGRAIRLE-LQGPR---GSPNARSQPSKT-----LFVKGLSEDTTEETLKE 595
Query: 134 IFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTD 193
F+ G + +++ D +TG SKG+GF+ F+S +DAK A+E + E+ G + +
Sbjct: 596 SFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 652
Query: 194 RNESVGGG 201
+ E GG
Sbjct: 653 KGEGGFGG 660
Score = 119 (46.9 bits), Expect = 0.00057, P = 0.00057
Identities = 46/183 (25%), Positives = 89/183 (48%)
Query: 62 YIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGS 121
Y++F+ E + A+ L G K+ G I + EK + ++ + R L +
Sbjct: 356 YVDFESAEDLEKALELTGLKVFGNEI-----KLEKPKGKDSKKDRDAR------TLLAKN 404
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L + +T+D L+ +FE D +++ + G+SKG +I F + DA+K E+ G E+
Sbjct: 405 LPYKVTQDELKEVFE-----DAVEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 459
Query: 182 AGRPMKVGTVTDRNESVG--GGPSNLDTDEMER---AGVDLGATGR-LQLMFKLAEGTGL 235
GR + + ++ +S GG ++ + E + + + AT LQ +F+ A T +
Sbjct: 460 DGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA--TFI 517
Query: 236 ELP 238
++P
Sbjct: 518 KVP 520
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 178 (67.7 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 48/190 (25%), Positives = 93/190 (48%)
Query: 11 PEERD-ARTIFCMQLSQRIRTRDLEEFFSSV-GKVRDVRLITCNKTRRFKGIAYIEFKDP 68
P+ D A+T++ +L + +++ +S+V G+ +V++I ++ G ++EF
Sbjct: 40 PQGNDSAKTLWMGELEPWMDENFIKQIWSTVCGETVNVKVIRDRQSGN-AGYCFVEFPSS 98
Query: 69 ESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITE 128
E+ A+GLNG + + + A G + RG +++G L + E
Sbjct: 99 EAATKALGLNGSPVPNSQRVFKLNWAS---GGGLVDRRDERGP--EYSIFVGDLGPEVNE 153
Query: 129 DMLRGIFEP-FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMK 187
+L +F+ F + ++M D TG+S+GYGF+ F D ++A ++ G RPM+
Sbjct: 154 FVLVSLFQARFPSCKSAKIMTDAMTGQSRGYGFVRFTDESDQQRALVEMQGVYCGNRPMR 213
Query: 188 VGTVTDRNES 197
+ T T + S
Sbjct: 214 ISTATPKTRS 223
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 181 (68.8 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 53/195 (27%), Positives = 95/195 (48%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L 77
IF + + I + L + FS+ G + +++ C++ KG ++ F+ E+ A+ +
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYGFVHFETQEAANRAIETM 158
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEP 137
NG L + V ++ K R + + +YI + +I + L+ IF
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAE----MGAKAVEFT-NVYIKNFGEDIDSEKLKNIFTE 213
Query: 138 FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNES 197
FGK ++ +M D + GRS+G+GF+ F + DA++A ++NG EL GR + VG R E
Sbjct: 214 FGKTLSVCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLER 272
Query: 198 VGGGPSNLDTDEMER 212
G + + ER
Sbjct: 273 QGELKRKFEQIKQER 287
Score = 168 (64.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 51/165 (30%), Positives = 81/165 (49%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L + FS G++ +R+ TRR G AYI F+ P A+ +N + + G PI +
Sbjct: 27 LYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTMNYEVIKGRPIRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P L+ G G ++I ++ +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PGLRKSGVGN---IFIKNMDESIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGYGF+ F + + A +A E +NG L R + VG R E
Sbjct: 135 NG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKE 178
Score = 164 (62.8 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 48/186 (25%), Positives = 90/186 (48%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L 77
++ + I + L+ F+ GK V ++T ++ R +G ++ F + A+ +
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMT-DERGRSRGFGFVNFVNHGDARRAVTEM 251
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQP-------RGTGGPMRLYIGSLHFNITEDM 130
NG++L G + V Q R G + R G + LY+ +L +I ++
Sbjct: 252 NGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQG--VNLYVKNLDDSIDDEK 309
Query: 131 LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGT 190
LR F P+G I + ++M D G S+G+GF+ F S ++A KA ++NG ++ +P+ V
Sbjct: 310 LRKEFAPYGTITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 367
Query: 191 VTDRNE 196
+ E
Sbjct: 368 AQRKEE 373
Score = 139 (54.0 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 111 TGGPM----RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSA 166
+GGP LY+G LH ++TE ML F P G+I +I++ D T RS GY +I F
Sbjct: 3 SGGPAYPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQP 62
Query: 167 DDAKKAQEQLNGFELAGRPMKV 188
DA+ A + +N + GRP+++
Sbjct: 63 ADAECALDTMNYEVIKGRPIRI 84
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 173 (66.0 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 52/195 (26%), Positives = 96/195 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L++ F G V+++T +++ + KG ++ F+
Sbjct: 54 ELGARAKEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMT-DESGKSKGFGFVSFER 109
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG++L G I V Q + R Q R T + LY+ +
Sbjct: 110 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 169
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 170 LDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 227
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 228 ATKPLYVALAQRKEE 242
Score = 140 (54.3 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 40/149 (26%), Positives = 78/149 (52%)
Query: 49 ITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQ 107
+ C++ KG ++ F+ E+ A+ +NG L + V ++ K R L
Sbjct: 2 VVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE----LG 56
Query: 108 PRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSAD 167
R +YI + ++ ++ L+ +F P ++++M D ++G+SKG+GF++F +
Sbjct: 57 ARAKEFT-NVYIKNFGEDMDDERLKDLFGP---ALSVKVMTD-ESGKSKGFGFVSFERHE 111
Query: 168 DAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
DA+KA +++NG EL G+ + VG + E
Sbjct: 112 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 140
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 181 (68.8 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 50/190 (26%), Positives = 96/190 (50%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + FS+ G + +++ C++ KG ++ F+
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYGFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L R +YI + ++
Sbjct: 148 QEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE----LGARAKEFT-NVYIKNFGDDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ +F +G ++++M D D G+SKG+GF++F +DA+KA +++NG ++ G+ M
Sbjct: 203 NDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSM 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 FVGRAQKKVE 271
Score = 176 (67.0 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 51/195 (26%), Positives = 92/195 (47%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + L+E F G V+++T + + KG ++ F+
Sbjct: 182 ELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMT-DDNGKSKGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG+ + G + V Q + R Q R T + LY+ +
Sbjct: 241 HEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 301 LDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 359 ATKPLYVALAQRKEE 373
Score = 175 (66.7 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 59/214 (27%), Positives = 100/214 (46%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG- 76
+++ L Q + L E FS G + +R+ TRR G AY+ F+ P A+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 77 LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFE 136
+N + G P+ + +Q + P+L+ G G ++I +L +I L F
Sbjct: 72 MNFDVIKGRPVRIMWSQRD--------PSLRKSGVGN---IFIKNLDKSIDNKALYDTFS 120
Query: 137 PFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FG I + +++ D + G SKGYGF+ F + + A++A +++NG L R + VG R E
Sbjct: 121 AFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKE 178
Query: 197 ---SVGGGPSNLDTDEMERAGVDLGATGRLQLMF 227
+G ++ G D+ RL+ MF
Sbjct: 179 REAELGARAKEFTNVYIKNFGDDMNDE-RLKEMF 211
Score = 143 (55.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 35/110 (31%), Positives = 60/110 (54%)
Query: 106 LQPRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH 164
+ P PM LY+G LH ++TE ML F P G I +I++ D T RS GY ++ F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 165 SADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVG-GGPSNLDTDEMERA 213
DA++A + +N + GRP+++ + R+ S+ G N+ ++++
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRI-MWSQRDPSLRKSGVGNIFIKNLDKS 109
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 175 (66.7 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 50/169 (29%), Positives = 83/169 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D+S + +F LS +DL+++F+ G+V D + T R +G +I FKD
Sbjct: 55 DISSPLTEGVKMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKD 114
Query: 68 PESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMR-LYIGSLHFNI 126
ESV + +L G ++ P +A + P++ +++G L+
Sbjct: 115 AESVDKVLEHKEHRLDGR--LIDPKKAMAMKKD-------------PIKKIFVGGLNPEA 159
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
ED +R FE FG+I+ I+L +DP T + +G+ FITF D KK E+
Sbjct: 160 GEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILEK 208
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 175 (66.7 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 43/142 (30%), Positives = 70/142 (49%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92
L E+F G+V++ ++ T+R +G ++ F D V + + +L I P
Sbjct: 3 LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTI--DPK 60
Query: 93 QAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT 152
A RA QP+ ++++G L N T + ++ FE FGK+D+ LM D T
Sbjct: 61 VAFPRRA-------QPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTT 113
Query: 153 GRSKGYGFITFHSADDAKKAQE 174
R +G+GF+TF S D +K E
Sbjct: 114 NRHRGFGFVTFESEDIVEKVCE 135
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 175 (66.7 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 49/166 (29%), Positives = 80/166 (48%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
S E DA +F LS +DL+++F+ G+V D + T R +G +I FKD
Sbjct: 67 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSS 126
Query: 70 SVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITED 129
SV + +L G ++ P +A + P ++++G L+ TE+
Sbjct: 127 SVEKVLDQKEHRLDGR--VIDPKKAMAMKK-------DP-----VKKIFVGGLNPEATEE 172
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+R F FG+I+ I+L +DP + +G+ FITF D KK E+
Sbjct: 173 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 218
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 175 (66.7 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 49/166 (29%), Positives = 80/166 (48%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
S E DA +F LS +DL+++F+ G+V D + T R +G +I FKD
Sbjct: 68 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSS 127
Query: 70 SVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITED 129
SV + +L G ++ P +A + P ++++G L+ TE+
Sbjct: 128 SVEKVLDQKEHRLDGR--VIDPKKAMAMKK-------DP-----VKKIFVGGLNPEATEE 173
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+R F FG+I+ I+L +DP + +G+ FITF D KK E+
Sbjct: 174 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 174 (66.3 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 51/168 (30%), Positives = 81/168 (48%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S E DA +F LS +DL+++FS G+V D + + T R +G +I FK+
Sbjct: 36 DASKCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKE 95
Query: 68 PESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNIT 127
+SV + +L G I + A K +P ++++G L+ T
Sbjct: 96 SDSVDRVLQQKEHRLDGRQIDPKRAMAIKK---------EP-----VKKIFVGGLNPETT 141
Query: 128 EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
E+ +R F FG+I+ I+L DP T + +G+ FITF KK E+
Sbjct: 142 EEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEK 189
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 181 (68.8 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
+ERDART+F L R+ +++ F + +VRL+ NK KG+AYIEFK
Sbjct: 364 KERDARTLFVKNLPYRVTEDEMKNVFENA---LEVRLVL-NKEGSSKGMAYIEFKTEAEA 419
Query: 72 PLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDM 130
A+ G ++ G +++ T EK++ + + G L + +L + +E+
Sbjct: 420 EKALEEKQGTEVDGRAMVIDYT-GEKSQQESQ----KGGGERESKTLIVNNLSYAASEET 474
Query: 131 LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188
L+ +F+ K +I+ M + GR KGY F+ F +A+DAK+A N E+ GR +++
Sbjct: 475 LQELFK---KATSIK-MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL 528
Score = 173 (66.0 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 55/192 (28%), Positives = 91/192 (47%)
Query: 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVP 72
ER+++T+ LS L+E F K +++ N+ R KG A++EF E
Sbjct: 455 ERESKTLIVNNLSYAASEETLQELFK---KATSIKMPQNNQGRP-KGYAFVEFPTAEDAK 510
Query: 73 LAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMR--LYIGSLHFNITED 129
A+ N ++ G I ++ + + N+ RG L++ L + TE+
Sbjct: 511 EALNSCNNTEIEGRAIRLEFSSPSWQKG-----NMNARGGFNQQSKTLFVRGLSEDTTEE 565
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
LR FE G I + +++ D DTG SKG+GF+ F S +DAK A+E + E+ G + +
Sbjct: 566 TLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLD 622
Query: 190 TVTDRNESVGGG 201
+ E GG
Sbjct: 623 FAKPKGEFQRGG 634
Score = 172 (65.6 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 58/210 (27%), Positives = 106/210 (50%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPT 92
++EFF K V + ++RF Y++F E + A+ LNG+KL+G+ I
Sbjct: 299 IKEFFGK--KNLQVSEVRIGSSKRF---GYVDFLSAEDMDKALQLNGKKLMGLEI----- 348
Query: 93 QAEKNRAGNTLP-NLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+ EK ++ +L N + R L++ +L + +TED ++ +FE ++ ++L+++ +
Sbjct: 349 KLEKAKSKESLKENKKERDA---RTLFVKNLPYRVTEDEMKNVFE--NALE-VRLVLNKE 402
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV---GTVTDRNESVGGGPSNLDTD 208
G SKG +I F + +A+KA E+ G E+ GR M + G + + GGG T
Sbjct: 403 -GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTL 461
Query: 209 EMERAGVDLGATGRLQLMFKLAEGTGLELP 238
+ + LQ +FK A T +++P
Sbjct: 462 IVNNLSY-AASEETLQELFKKA--TSIKMP 488
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 176 (67.0 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 48/166 (28%), Positives = 78/166 (46%)
Query: 10 SPEE-RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
SP+ D +F LS + L E+F G+V++ ++ T+R +G ++ F D
Sbjct: 12 SPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 71
Query: 69 ESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITE 128
V + + +L I P A RA QP+ ++++G L N T
Sbjct: 72 AGVDKVLAQSRHELDSKTI--DPKVAFPRRA-------QPKMVTRTKKIFVGGLSVNTTV 122
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
+ ++ FE F K+D+ LM D T R +G+GF+TF S D +K E
Sbjct: 123 EDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 157 (60.3 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 30/86 (34%), Positives = 50/86 (58%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L +G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKVGTVTDRNESVGGG 201
+NG + GR ++V +E+ G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSENRSRG 92
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 157 (60.3 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 30/86 (34%), Positives = 50/86 (58%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L +G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKVGTVTDRNESVGGG 201
+NG + GR ++V +E+ G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSENRSRG 92
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 157 (60.3 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 30/86 (34%), Positives = 50/86 (58%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L +G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKVGTVTDRNESVGGG 201
+NG + GR ++V +E+ G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSENRSRG 92
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 177 (67.4 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 47/171 (27%), Positives = 80/171 (46%)
Query: 4 AYSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYI 63
A S + + D +F LS + L ++FS G++R+ ++ T+R +G ++
Sbjct: 8 ATSGSPNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFV 67
Query: 64 EFKDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLH 123
F D SV + +L I P A RA QP+ ++++G L
Sbjct: 68 TFADAASVDKVLAQPHHELDSKTI--DPKVAFPRRA-------QPKMVTRTKKIFVGGLS 118
Query: 124 FNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
N + ++ FE FGK+++ LM D T R +G+GF+TF + D +K E
Sbjct: 119 ANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Score = 125 (49.1 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173
P +++IG L + + D LR F FG+I +M DP T RS+G+GF+TF A K
Sbjct: 20 PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVL 79
Query: 174 EQ 175
Q
Sbjct: 80 AQ 81
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 169 (64.5 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 50/185 (27%), Positives = 86/185 (46%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
L P AR ++ + + + L + G V V+++ + R + + K
Sbjct: 68 LDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSV 127
Query: 69 ESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNT-LPNLQPRGTG---GPMRLYIGSLH 123
E + LNG + G I V T EK A + L LQ + P ++Y+G+L
Sbjct: 128 EDANAVVEKLNGNTVEGREIKVNIT--EKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLA 185
Query: 124 FNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAG 183
+T++ML +F GK+ + ++ P T +S G+GF+TF S +D + A LN L G
Sbjct: 186 KTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEG 245
Query: 184 RPMKV 188
+ ++V
Sbjct: 246 QKIRV 250
Score = 149 (57.5 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+YIG++ +T + L + E G ++ +Q+M D +GRS+ +GF T S +DA E+
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 176 LNGFELAGRPMKVGTVTDR 194
LNG + GR +KV +T++
Sbjct: 137 LNGNTVEGREIKVN-ITEK 154
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 170 (64.9 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 48/173 (27%), Positives = 87/173 (50%)
Query: 3 PAYSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAY 62
P +S+ + +R+ +F LS +DL+++FS G+V D L T R +G +
Sbjct: 17 PRHSE-AATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 75
Query: 63 IEFKDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSL 122
+ FK+ ESV M KL G ++ P +A+ + +P ++++G L
Sbjct: 76 VLFKESESVDKVMDQKEHKLNGK--VIDPKRAK------AMKTKEP-----VKKIFVGGL 122
Query: 123 HFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+ E+ +R F FG++++I+L +D T + +G+ FITF + KK E+
Sbjct: 123 SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 175
Score = 128 (50.1 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 32/113 (28%), Positives = 58/113 (51%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+++IG L ++ T+ L+ F FG++ + L +DP TGRS+G+GF+ F ++ K +Q
Sbjct: 31 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 90
Query: 176 ----LNGFELAGRPMKVGTVTDRNESVGGGPSNLDTDEMERAGVDLGATGRLQ 224
LNG + + K + + + G + DT E E+ G G ++
Sbjct: 91 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPE-EKIREYFGGFGEVE 142
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 180 (68.4 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 51/179 (28%), Positives = 90/179 (50%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-L 77
+F L I + L + FS+ G + +++ C++ +G ++ F+ E+ A+ +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVV-CDENGS-RGHGFVHFETQEAATRAIQTM 158
Query: 78 NGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEP 137
NG L + V ++ K R R +YI + ++ ++ LR IF
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAE----FGARAMEFT-NVYIKNFGDDMDDNRLREIFSR 213
Query: 138 FGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FGK ++++M+D TGRSKG+GF+ F ++A+KA +NG E+ GR + VG R E
Sbjct: 214 FGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLE 271
Score = 174 (66.3 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 48/170 (28%), Positives = 82/170 (48%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS GK V+++ + T R KG ++ F+ E A+ +NG+++ G + V
Sbjct: 207 LREIFSRFGKTLSVKVMM-DHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGR 265
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMR-----LYIGSLHFNITEDMLRGIFEPFGKIDNIQL 146
Q R + R LY+ +L I ++ LR F P+G I + ++
Sbjct: 266 AQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKV 325
Query: 147 MVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
M + G SKG+GF+ F S ++A KA ++NG ++ +P+ V + E
Sbjct: 326 MTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
Score = 153 (58.9 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 48/165 (29%), Positives = 80/165 (48%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ +RR G AYI F+ P A+ +N + + G P+ +
Sbjct: 27 LYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTMNFEVIKGRPVRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PGLRKSGVGN---VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G S+G+GF+ F + + A +A + +NG L R + VG R E
Sbjct: 135 NG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKE 178
Score = 141 (54.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 110 GTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADD 168
G G P+ LY+G LH ++TE ML F P G I +I++ D + RS GY +I F D
Sbjct: 5 GPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPAD 64
Query: 169 AKKAQEQLNGFE-LAGRPMKV 188
A++A + +N FE + GRP+++
Sbjct: 65 AERALDTMN-FEVIKGRPVRI 84
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 180 (68.4 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 52/195 (26%), Positives = 94/195 (48%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
+L ++ ++ + + L+E+F G V+++T + + +G ++ F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKS-RGFGFVSFER 240
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNL----QPRGTGGP-MRLYIGS 121
E A+ +NG+ L G I V Q + R Q R T + LY+ +
Sbjct: 241 HEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFEL 181
L I ++ LR F PFG I + ++M++ GRSKG+GF+ F S ++A KA ++NG +
Sbjct: 301 LDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 182 AGRPMKVGTVTDRNE 196
A +P+ V + E
Sbjct: 359 ATKPLYVALAQRKEE 373
Score = 168 (64.2 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 50/165 (30%), Positives = 82/165 (49%)
Query: 33 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG-LNGQKLLGIPIIVQP 91
L E FS G + +R+ TRR G AY+ F+ P A+ +N + G P+ +
Sbjct: 27 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 86
Query: 92 TQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD 151
+Q + P+L+ G G ++I +L +I L F FG I + +++ D +
Sbjct: 87 SQRD--------PSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 134
Query: 152 TGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
G SKGYGF+ F + + A++A +++NG L R + VG R E
Sbjct: 135 NG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKE 178
Score = 167 (63.8 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 49/190 (25%), Positives = 94/190 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 67
D S + IF L + I + L + FS+ G + +++ C++ KG ++ F+
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGS-KGYGFVHFET 147
Query: 68 PESVPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNI 126
E+ A+ +NG L + V ++ K R L R +YI + ++
Sbjct: 148 QEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE----LGARAKEFT-NVYIKNFGEDM 202
Query: 127 TEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPM 186
++ L+ F +G ++++M D D G+S+G+GF++F +DA+KA + +NG +L G+ +
Sbjct: 203 DDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAI 261
Query: 187 KVGTVTDRNE 196
VG + E
Sbjct: 262 FVGRAQKKVE 271
Score = 139 (54.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 34/110 (30%), Positives = 60/110 (54%)
Query: 106 LQPRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH 164
+ P PM LY+G LH ++TE ML F P G I +I++ D T RS GY ++ F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 165 SADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVG-GGPSNLDTDEMERA 213
DA++A + +N + G+P+++ + R+ S+ G N+ ++++
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKS 109
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 175 (66.7 bits), Expect = 8.3e-11, P = 8.3e-11
Identities = 49/188 (26%), Positives = 85/188 (45%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
E R +F LS L+ ++ G++ D +I +++ +G ++ F V
Sbjct: 16 ENEQIRKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEV 75
Query: 72 PLAMGLNGQKLLGIPIIVQPTQA---EKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITE 128
AM + G +V P +A EK+ +L N++ +L++G + + E
Sbjct: 76 DAAMAARPHSIDGR--VVDPKRAVSREKSEKQGSLVNVK--------KLFVGGIKEDTEE 125
Query: 129 DMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKV 188
LR FE +GKID I+++ D +G+ +G+GF+TF D K Q + G +V
Sbjct: 126 HHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQ-KYHAINGHRAEV 184
Query: 189 GTVTDRNE 196
G R E
Sbjct: 185 GKALSRQE 192
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 172 (65.6 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 46/185 (24%), Positives = 83/185 (44%)
Query: 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPES 70
PE + +F L + ++ L F G V +I T + +G ++ E
Sbjct: 107 PEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166
Query: 71 VPLAMG-LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITED 129
A+ N ++ G + V +R P QPR R+Y+G+L +++
Sbjct: 167 AEKAVEKFNSFEVNGRRLTVNRAAPRGSR-----PERQPRVYDAAFRIYVGNLPWDVDSG 221
Query: 130 MLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVG 189
L +F GK+ + +++ D +TGRS+G+GF+ + ++ A L+G L GR +KV
Sbjct: 222 RLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVN 281
Query: 190 TVTDR 194
+R
Sbjct: 282 VAEER 286
>ASPGD|ASPL0000038712 [details] [associations]
symbol:AN3427 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF
EMBL:AACD01000056 RefSeq:XP_661031.1 ProteinModelPortal:Q5B7Q3
STRING:Q5B7Q3 EnsemblFungi:CADANIAT00009611 GeneID:2874554
KEGG:ani:AN3427.2 Uniprot:Q5B7Q3
Length = 357
Score = 175 (66.7 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 45/178 (25%), Positives = 88/178 (49%)
Query: 8 DLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCN------KTRRF--KG 59
+ +P++R I+ L+ + D+ F ++ D + + K+ R KG
Sbjct: 61 ETAPQKRSDYGIWIGNLAFSVTKEDIRRFLTTNCSFTDATITRVHLPKPSDKSSRAQNKG 120
Query: 60 IAYIEFKDPESVPLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLP--NLQPRGTGGP--M 115
AY++F P+++ A+GL+ Q + G ++++ + K R + N P +G P
Sbjct: 121 FAYVDFSTPKALEEALGLSEQLVSGRRVLIKDAKNYKGRPEKSQDDGNNAPTSSGRPPSK 180
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173
RL++G+L F+ T++ L F G + N+ + D+G+ KGY ++ F + AK A+
Sbjct: 181 RLFVGNLSFDTTKEFLEEHFSQCGTVTNVHVATFQDSGKCKGYAWVEFEDLEAAKTAE 238
Score = 37 (18.1 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 156 KGYGFITFHSADD---AKKAQEQ---LNGFELAGRPMKVGTVTD 193
+GY +IT + D+ A+K Q + LN ++ GR M++ D
Sbjct: 239 RGYKYITEDNEDEDDSAQKPQRRKIWLN--QVLGRRMRLEFAED 280
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 156 (60.0 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 50/180 (27%), Positives = 82/180 (45%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG- 76
+++ L + L E FS G + +R+ TRR G AY+ ++ P A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 77 LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFE 136
LN + G P+ + +Q + P+L+ G G ++I +L I L IF
Sbjct: 63 LNFDVIKGRPVRIMWSQRD--------PSLRKSGVGN---VFIKNLGKTIDNKALYNIFS 111
Query: 137 PFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FG I + ++ D + G KGYGF+ F + A++A + +NG L R + VG E
Sbjct: 112 AFGNILSCKVACD-EKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKE 169
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 156 (60.0 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 50/180 (27%), Positives = 82/180 (45%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG- 76
+++ L + L E FS G + +R+ TRR G AY+ ++ P A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 77 LNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFE 136
LN + G P+ + +Q + P+L+ G G ++I +L I L IF
Sbjct: 63 LNFDVIKGRPVRIMWSQRD--------PSLRKSGVGN---VFIKNLGKTIDNKALYNIFS 111
Query: 137 PFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
FG I + ++ D + G KGYGF+ F + A++A + +NG L R + VG E
Sbjct: 112 AFGNILSCKVACD-EKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKE 169
WARNING: HSPs involving 1176 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 370 353 0.00079 117 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1426
No. of states in DFA: 605 (64 KB)
Total size of DFA: 226 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.41u 0.07s 27.48t Elapsed: 00:00:19
Total cpu time: 27.48u 0.07s 27.55t Elapsed: 00:00:19
Start: Thu Aug 15 12:18:21 2013 End: Thu Aug 15 12:18:40 2013
WARNINGS ISSUED: 2