RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2983
(370 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 114 bits (285), Expect = 4e-31
Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 8/185 (4%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
E R +F LS L F G + D ++ T+R +G ++ + E V
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 72 PLAMGLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDML 131
AM V E RA + + +P ++++G + + E L
Sbjct: 62 DAAMNARPH-------KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 114
Query: 132 RGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTV 191
R FE +GKI+ I++M D +G+ +G+ F+TF D K + G +V
Sbjct: 115 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKA 173
Query: 192 TDRNE 196
+ E
Sbjct: 174 LSKQE 178
Score = 52.3 bits (124), Expect = 9e-09
Identities = 16/83 (19%), Positives = 37/83 (44%)
Query: 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG 76
+ IF + + L ++F GK+ + ++T + + +G A++ F D +SV +
Sbjct: 98 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 157
Query: 77 LNGQKLLGIPIIVQPTQAEKNRA 99
+ G V+ +++ A
Sbjct: 158 QKYHTVNGHNCEVRKALSKQEMA 180
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 94.3 bits (234), Expect = 1e-24
Identities = 67/92 (72%), Positives = 82/92 (89%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 66
D+LSPEERDART+FCMQL+ RIR RDLE+FFS+VGKVRDVR+I+ +RR KGIAY+EF
Sbjct: 9 DNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFC 68
Query: 67 DPESVPLAMGLNGQKLLGIPIIVQPTQAEKNR 98
+ +SVPLA+GL GQ+LLG+PIIVQ +QAEKNR
Sbjct: 69 EIQSVPLAIGLTGQRLLGVPIIVQASQAEKNR 100
Score = 68.5 bits (167), Expect = 4e-15
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
++ L I L F GK+ +++++ D ++ RSKG ++ F A
Sbjct: 20 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG- 78
Query: 176 LNGFELAGRPMKV 188
L G L G P+ V
Sbjct: 79 LTGQRLLGVPIIV 91
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 84.2 bits (208), Expect = 4e-21
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
LY+G LH ++TE ML F P G I +I++ D T RS GY ++ F DA++A + +
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 177 NGFELAGRPMKV 188
N + G+P+++
Sbjct: 63 NFDVIKGKPVRI 74
Score = 60.3 bits (146), Expect = 2e-12
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-G 76
+++ L + L E FS G + +R+ TRR G AY+ F+ P A+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 77 LNGQKLLGIPIIVQPTQAEKN 97
+N + G P+ + ++++
Sbjct: 62 MNFDVIKGKPVRIMW--SQRD 80
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 83.8 bits (207), Expect = 8e-21
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD-TGRSKGYGFITFHSADDAKKAQE 174
++ + ++ F + +R +F FG++ ++L TG +G+GF+ F + DAKKA
Sbjct: 10 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFN 69
Query: 175 QL-NGFELAGRPMKV 188
L + L GR + +
Sbjct: 70 ALCHSTHLYGRRLVL 84
Score = 58.8 bits (142), Expect = 7e-12
Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLIT-CNKTRRFKGIAYIEFKDPE 69
P+++ I + + R++ E FS+ G+++ VRL T +G +++F +
Sbjct: 3 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQ 62
Query: 70 SVPLAMG--LNGQKLLGIPIIVQPTQAEKNR 98
A + L G ++++ +E
Sbjct: 63 DAKKAFNALCHSTHLYGRRLVLEWADSEVTV 93
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 80.9 bits (199), Expect = 1e-19
Identities = 28/94 (29%), Positives = 50/94 (53%)
Query: 110 GTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDA 169
G+ G RL++ +L + +E+ L +F +G + + +D T + KG+ F+TF + A
Sbjct: 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHA 63
Query: 170 KKAQEQLNGFELAGRPMKVGTVTDRNESVGGGPS 203
KA +++G GR + V T + E+ GPS
Sbjct: 64 VKAYAEVDGQVFQGRMLHVLPSTIKKEASQSGPS 97
Score = 49.7 bits (118), Expect = 1e-08
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLA 74
+ +F LS DLE+ FS+ G + ++ + T++ KG A++ F PE A
Sbjct: 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 66
Query: 75 M-GLNGQKLLGIPIIVQPTQAEKNRA 99
++GQ G + V P+ +K +
Sbjct: 67 YAEVDGQVFQGRMLHVLPSTIKKEAS 92
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 79.3 bits (195), Expect = 3e-19
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+++IG L + T++ LR F FG++ +M DP T RS+G+GF+TF K
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA- 60
Query: 176 LNGFELAGRPMKV 188
+ EL + +
Sbjct: 61 QSRHELDSKTIDP 73
Score = 56.5 bits (136), Expect = 4e-11
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLN 78
+F LS + L E+F G+V++ ++ T+R +G ++ F D V + +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62
Query: 79 GQKLLGIPIIVQ 90
+L I +
Sbjct: 63 RHELDSKTIDPK 74
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 79.6 bits (196), Expect = 3e-19
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
LY+G+L F TE+ + +F G I I + +D + G+ F+ ++S DA+ A
Sbjct: 9 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 68
Query: 176 LNGFELAGRPMKV 188
+NG L R ++
Sbjct: 69 INGTRLDDRIIRT 81
Score = 51.9 bits (124), Expect = 2e-09
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPL 73
+ + T++ LS + E FS G ++ + + + G ++E+
Sbjct: 5 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAEN 64
Query: 74 AM-GLNGQKLLGIPIIVQ 90
AM +NG +L I
Sbjct: 65 AMRYINGTRLDDRIIRTD 82
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 78.9 bits (194), Expect = 4e-19
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L+IG L + +D ++ + FG + L+ D TG SKGY F + + +A
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 176 LNGFELAGRPMKVGTVTDRNES 197
LNG +L + + V + ++
Sbjct: 63 LNGMQLGDKKLLVQRASVGAKN 84
Score = 56.6 bits (136), Expect = 4e-11
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 16 ARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM 75
A +F L + ++E +S G ++ L+ + T KG A+ E+ D A+
Sbjct: 1 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 60
Query: 76 -GLNGQKLLGIPIIVQPTQAEKNRA 99
GLNG +L ++VQ A
Sbjct: 61 AGLNGMQLGDKKLLVQRASVGAKNA 85
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 78.1 bits (192), Expect = 8e-19
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
LY+ +L IT+D L IF +G I ++ D TGR +G F+ ++ ++A++A
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67
Query: 176 LNGFELAG--RPMKV 188
LN G +P+ V
Sbjct: 68 LNNVIPEGGSQPLSV 82
Score = 56.1 bits (135), Expect = 5e-11
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
E ++ L + I L+ F G + ++ T R +G+A++ + E
Sbjct: 2 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 61
Query: 72 PLAM-GLNGQKLLGI--PIIVQ 90
A+ LN G P+ V+
Sbjct: 62 QEAISALNNVIPEGGSQPLSVR 83
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 77.0 bits (189), Expect = 2e-18
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 113 GPM-------RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHS 165
GP+ +Y+G L ++E +L +F G + N + D TG+ +GYGF+ F S
Sbjct: 1 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 60
Query: 166 ADDAKKAQEQLNGFELAGRPMKVGTVTDRNESV 198
+DA A + ++ +L G+P++V + N+++
Sbjct: 61 EEDADYAIKIMDMIKLYGKPIRVNKASAHNKNL 93
Score = 55.8 bits (134), Expect = 9e-11
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPES 70
E T++ L +++ L E F G V + + T + +G ++EF E
Sbjct: 4 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 63
Query: 71 VPLAM-GLNGQKLLGIPIIVQPTQAEKN 97
A+ ++ KL G PI V A
Sbjct: 64 ADYAIKIMDMIKLYGKPIRVNKASAHNK 91
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 76.2 bits (187), Expect = 4e-18
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPD---TGRSKGYGFITFHSADDAKKAQ 173
L+I +L+F+ TE+ L+G+F G I + + + S G+GF+ + + A+KA
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 174 EQLNGFELAGRPMKV 188
+QL G + G ++V
Sbjct: 61 KQLQGHTVDGHKLEV 75
Score = 52.0 bits (124), Expect = 2e-09
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLI---TCNKTRRFKGIAYIEFKDPESVPLAM 75
+F L+ L+ FS VG ++ + G ++E+K PE A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 76 -GLNGQKLLGIPIIVQPTQAEKNRA 99
L G + G + V+ ++ A
Sbjct: 61 KQLQGHTVDGHKLEVRISERATKPA 85
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 75.8 bits (186), Expect = 4e-18
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
L + L ++T+ L +F G I+ ++M D TG S GY F+ F S D+++A +
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 176 LNGFELAGRPMKV 188
LNG + + +KV
Sbjct: 64 LNGITVRNKRLKV 76
Score = 50.8 bits (121), Expect = 4e-09
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-G 76
+ L Q + R+L F ++G + R++ KT G A+++F A+
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 77 LNGQKLLGIPIIVQPTQ 93
LNG + + V +
Sbjct: 64 LNGITVRNKRLKVSYAR 80
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 76.2 bits (187), Expect = 8e-18
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
LYI +L + IT + + IF +G I + +T ++G ++ + DAK A + L
Sbjct: 10 LYIRNLPYKITAEEMYDIFGKYGPIRQ---IRVGNTPETRGTAYVVYEDIFDAKNACDHL 66
Query: 177 NGFELAGRPMKV 188
+GF + R + V
Sbjct: 67 SGFNVCNRYLVV 78
Score = 58.5 bits (141), Expect = 2e-11
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
L PE R ++ L +I ++ + F G +R I T +G AY+ ++D
Sbjct: 2 LPPEVN--RILYIRNLPYKITAEEMYDIFGKYGPIRQ---IRVGNTPETRGTAYVVYEDI 56
Query: 69 ESVPLAM-GLNGQKLLGIPIIVQPTQAEKNR 98
A L+G + ++V A +
Sbjct: 57 FDAKNACDHLSGFNVCNRYLVVLYYNANRAF 87
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 74.6 bits (183), Expect = 1e-17
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L + +L F +++ ++ +F FG + + D +GRS G + F DA KA +Q
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 60
Query: 176 LNGFELAGRPMKV 188
NG L GRPM +
Sbjct: 61 YNGVPLDGRPMNI 73
Score = 50.7 bits (121), Expect = 4e-09
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GL 77
+ L + D++E F+ G ++ + + R G A + F+ AM
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQY 61
Query: 78 NGQKLLGIPIIVQ 90
NG L G P+ +Q
Sbjct: 62 NGVPLDGRPMNIQ 74
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 74.7 bits (183), Expect = 1e-17
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
L + L TE LR +F +G I ++ ++ D + RS+G+ F+ F + DDAK+A+E+
Sbjct: 11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 70
Query: 176 LNGFELAGRPMKV 188
NG EL GR ++V
Sbjct: 71 ANGMELDGRRIRV 83
Score = 49.3 bits (117), Expect = 2e-08
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM- 75
+ LS RDL E FS G + DV ++ ++RR +G A++ F++ + A
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
Query: 76 GLNGQKLLGIPIIV 89
NG +L G I V
Sbjct: 70 RANGMELDGRRIRV 83
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 73.5 bits (180), Expect = 3e-17
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+++IG L ++ T+ L+ F FG++ + L +DP TGRS+G+GF+ F ++ K +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD- 59
Query: 176 LNGFELAGRPMKV 188
+L G+ +
Sbjct: 60 QKEHKLNGKVIDP 72
Score = 50.8 bits (121), Expect = 4e-09
Identities = 24/72 (33%), Positives = 35/72 (48%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLN 78
+F LS +DL+++FS G+V D L T R +G ++ FK+ ESV M
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61
Query: 79 GQKLLGIPIIVQ 90
KL G I +
Sbjct: 62 EHKLNGKVIDPK 73
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 72.7 bits (178), Expect = 6e-17
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
++++G L + E+ +R F FG++++I+L +D T + +G+ FITF + KK E+
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 176 LNGFELAGRPMKV 188
+ ++
Sbjct: 61 -KYHNVGLSKCEI 72
Score = 50.3 bits (120), Expect = 5e-09
Identities = 19/72 (26%), Positives = 30/72 (41%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLN 78
IF LS + E+F G+V + L NKT + +G +I FK+ E V M
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61
Query: 79 GQKLLGIPIIVQ 90
+ ++
Sbjct: 62 YHNVGLSKCEIK 73
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 72.8 bits (178), Expect = 7e-17
Identities = 18/79 (22%), Positives = 33/79 (41%)
Query: 110 GTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDA 169
G GP + + ++ F ++ D + F + I + + G G + F S D+A
Sbjct: 5 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEA 64
Query: 170 KKAQEQLNGFELAGRPMKV 188
A LN + R +K+
Sbjct: 65 TAAVIDLNDRPIGSRKVKL 83
Score = 42.7 bits (100), Expect = 3e-06
Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
S + I + + ++ +FF + + N+ G A + F+ +
Sbjct: 3 SSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD 62
Query: 70 SVPLAM-GLNGQKLLGIPIIVQ 90
A+ LN + + + +
Sbjct: 63 EATAAVIDLNDRPIGSRKVKLV 84
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 72.8 bits (178), Expect = 9e-17
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
LY+G L + + +L F PFG I +IQ+ +D +T + +G+ F+ F A+DA A +
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 176 LNGFELAGRPMKV 188
+N EL GR ++V
Sbjct: 67 MNESELFGRTIRV 79
Score = 53.9 bits (129), Expect = 4e-10
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM- 75
R ++ L++ + + L F G + D+++ +T + +G A++EF+ E A+
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 76 GLNGQKLLGIPIIVQPTQAEKNR 98
+N +L G I V + + +
Sbjct: 66 NMNESELFGRTIRVNLAKPMRIK 88
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 73.2 bits (179), Expect = 9e-17
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L+IG L F TE+ LR +E +GK+ + +M DP + RS+G+GF+TF S + A
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA- 80
Query: 176 LNGFELAGRPMKVGTVTDRNES 197
+ GR ++ R ES
Sbjct: 81 ARPHSIDGRVVEPKRAVAREES 102
Score = 61.2 bits (148), Expect = 2e-12
Identities = 17/89 (19%), Positives = 33/89 (37%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
E+ R +F LS L ++ GK+ D ++ ++R +G ++ F
Sbjct: 14 KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 70 SVPLAMGLNGQKLLGIPIIVQPTQAEKNR 98
V AM + G + + A +
Sbjct: 74 EVDAAMAARPHSIDGRVVEPKRAVAREES 102
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 72.5 bits (177), Expect = 9e-17
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQL-----MVDPDTGRSKGYGFITFHSADDAK 170
RLY+G++ F ITE+ + F ++ + ++ + K + F+ F S D+
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 171 KAQEQLNGFELAGRPMKVGTVTDRN 195
+A +G G+ +K+ D
Sbjct: 63 QAM-AFDGIIFQGQSLKIRRPHDYQ 86
Score = 54.8 bits (131), Expect = 2e-10
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 16 ARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRL-----ITCNKTRRFKGIAYIEFKDPES 70
AR ++ + I + +FF++ ++ + + + + K A++EF+ +
Sbjct: 1 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 60
Query: 71 VPLAMGLNGQKLLGIPIIV 89
AM +G G + +
Sbjct: 61 TTQAMAFDGIIFQGQSLKI 79
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 71.6 bits (175), Expect = 2e-16
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L+IG L F T++ LR FE +G + + +M DP+T RS+G+GF+T+ + ++ A
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN- 66
Query: 176 LNGFELAGRPMKV 188
++ GR ++
Sbjct: 67 ARPHKVDGRVVEP 79
Score = 58.1 bits (140), Expect = 1e-11
Identities = 18/79 (22%), Positives = 30/79 (37%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
E R +F LS L F G + D ++ T+R +G ++ + E V
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 72 PLAMGLNGQKLLGIPIIVQ 90
AM K+ G + +
Sbjct: 62 DAAMNARPHKVDGRVVEPK 80
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 71.7 bits (175), Expect = 2e-16
Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQ-LMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
++IG+L I E +L F FG I +M DPDTG SKGY FI F S D + A E
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 176 LNGFELAGRPMKVGTVTDRNE 196
+NG L RP+ V ++
Sbjct: 61 MNGQYLCNRPITVSYAFKKDS 81
Score = 50.9 bits (121), Expect = 3e-09
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKV-RDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-G 76
IF L I + L + FS+ G + + +++ T KG A+I F ++ A+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 77 LNGQKLLGIPIIVQPTQAEKNR 98
+NGQ L PI V + ++
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSK 82
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 71.3 bits (174), Expect = 2e-16
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
L + L N+T++ R +F G+I++ +L+ D TG+S GYGF+ + DA+KA
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 176 LNGFELAGRPMKV 188
LNG L + +KV
Sbjct: 64 LNGLRLQTKTIKV 76
Score = 48.6 bits (115), Expect = 3e-08
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM- 75
+ L Q + + F S+G++ +L+ T + G ++ + DP+ A+
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 76 GLNGQKLLGIPIIVQPTQ 93
LNG +L I V +
Sbjct: 63 TLNGLRLQTKTIKVSYAR 80
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 71.2 bits (174), Expect = 3e-16
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
LY+ L +T+ L +F +G+I +++VD TG S+G GFI F +A++A +
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 67
Query: 176 LNGFELAGR--PMKV 188
LNG + +G P+ V
Sbjct: 68 LNGQKPSGATEPITV 82
Score = 50.0 bits (119), Expect = 9e-09
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
S RDA ++ L + + ++LE+ FS G++ R++ T +G+ +I F
Sbjct: 1 SASIRDA-NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 59
Query: 70 SVPLAM-GLNGQKLLG--IPIIVQ 90
A+ GLNGQK G PI V+
Sbjct: 60 EAEEAIKGLNGQKPSGATEPITVK 83
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 70.4 bits (172), Expect = 6e-16
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
L + L + TE L+ F FG++ +Q+ D TG SKG+GF+ F + K Q
Sbjct: 10 DLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 69
Query: 176 LNGFELAGRPMKVGTVTDRNE 196
+ + GR +
Sbjct: 70 RHMID--GRWCDCKLPNSKQS 88
Score = 45.7 bits (108), Expect = 3e-07
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 14 RDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPL 73
+ + + L + +DL+E+FS+ G+V V++ KT KG ++ F + E+
Sbjct: 6 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 65
Query: 74 AMGLNGQKLLGIPIIVQPTQAEKNR 98
M + G + +++++
Sbjct: 66 VM-SQRHMIDGRWCDCKLPNSKQSQ 89
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 70.5 bits (172), Expect = 6e-16
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 105 NLQPRGTGGPMR-------LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKG 157
Q G G + L+I L + L +F PFG + + ++ +D T SK
Sbjct: 2 TQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKC 61
Query: 158 YGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNES 197
+GF+++ + A+ A + +NGF++ + +KV +N+S
Sbjct: 62 FGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 101
Score = 45.1 bits (106), Expect = 6e-07
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
E + +F L Q +DL + F G V ++ +T K ++ + +P
Sbjct: 12 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 71
Query: 70 SVPLAM-GLNGQKLLGIPIIVQPTQAEKNR 98
S A+ +NG ++ + VQ +++ +
Sbjct: 72 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 101
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 70.3 bits (172), Expect = 7e-16
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 116 RLYIGSLH-FNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
R++IG+L+ + + + IF +GKI + KG+ F+ + + +A+ A
Sbjct: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH--------KGFAFVQYVNERNARAAVA 68
Query: 175 QLNGFELAGRPMKVGTVTDRNESVGGGPSN 204
+G +AG+ + + + + GPS+
Sbjct: 69 GEDGRMIAGQVLDINLAAEPKVN-RSGPSS 97
Score = 50.3 bits (120), Expect = 8e-09
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 6 SDDLSPEERDARTIFCMQLSQ-RIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIE 64
S + +F L+ ++ D+E FS GK+ + KG A+++
Sbjct: 5 SSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--------HKGFAFVQ 56
Query: 65 FKDPESVPLAM-GLNGQKLLGIPIIVQPTQAEKNR 98
+ + + A+ G +G+ + G + + K
Sbjct: 57 YVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVN 91
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 70.1 bits (171), Expect = 8e-16
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDN--IQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173
RL+IG + + + + I D +++G+ F+ + S A A+
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 174 EQLNG--FELAGRPMKV 188
+L +L G + V
Sbjct: 63 RKLMPGRIQLWGHQIAV 79
Score = 40.8 bits (95), Expect = 2e-05
Identities = 12/91 (13%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRD--VRLITCNKTRRFKGIAYIEFKDPESVPLA- 74
+F + + + ++ E + V + + + + +G A++E++ + +A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 75 --MGLNGQKLLGIPIIVQPTQAEKNRAGNTL 103
+ +L G I V + E + + +
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAEPEIDVDEDVM 93
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 69.0 bits (168), Expect = 1e-15
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
++++G L N T + ++ FE FGK+D+ LM D T R +G+GF+TF S D +K E
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE- 59
Query: 176 LNGFELAGRPMKV 188
++ E+ + ++
Sbjct: 60 IHFHEINNKMVEC 72
Score = 50.9 bits (121), Expect = 3e-09
Identities = 16/72 (22%), Positives = 31/72 (43%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLN 78
IF LS D++ +F GKV D L+ T R +G ++ F+ + V ++
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIH 61
Query: 79 GQKLLGIPIIVQ 90
++ + +
Sbjct: 62 FHEINNKMVECK 73
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 69.7 bits (170), Expect = 1e-15
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 19/113 (16%)
Query: 87 IIVQPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQL 146
++ P ++K RA TL +L FNITED L+ +FE +++
Sbjct: 3 MLEDPCTSKKVRAARTL--------------LAKNLSFNITEDELKEVFEDA-----LEI 43
Query: 147 MVDPDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVG 199
+ G+SKG +I F S DA+K E+ G E+ GR + + ++ + G
Sbjct: 44 RLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGGTRG 96
Score = 55.8 bits (134), Expect = 9e-11
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
S + R ART+ LS I +L+E F ++R V ++ + KGIAYIEFK
Sbjct: 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEA 64
Query: 70 SVPLAM-GLNGQKLLGIPIIVQPTQAEKNRAG 100
+ G ++ G + + T + G
Sbjct: 65 DAEKNLEEKQGAEIDGRSVSLYYTGEKGGTRG 96
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 68.9 bits (168), Expect = 2e-15
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+ + +L + E L+ +F PFG I I L D TG+SKG+ FI+FH +DA +A
Sbjct: 10 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 69
Query: 176 LNGFELAGRPMKV 188
++GF + V
Sbjct: 70 VSGFGYDHLILNV 82
Score = 51.6 bits (123), Expect = 2e-09
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
+ D TI LS+ R DL+E F G + + L T + KG A+I F E
Sbjct: 2 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRE 61
Query: 70 SVPLAM-GLNGQKLLGIPIIVQPTQAEKN 97
A+ G++G + + V+ + N
Sbjct: 62 DAARAIAGVSGFGYDHLILNVEWAKPSTN 90
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 68.6 bits (167), Expect = 2e-15
Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173
P RL++ ++ F + LR +F FGKI +++++ + SKG+GF+TF ++ DA +A+
Sbjct: 11 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAR 68
Query: 174 EQLNGFELAGRPMKVGTVTDR 194
E+L+G + GR ++V T R
Sbjct: 69 EKLHGTVVEGRKIEVNNATAR 89
Score = 46.6 bits (110), Expect = 2e-07
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
S + + + + R R DL + F GK+ DV R KG ++ F++
Sbjct: 5 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE--IIFNERGSKGFGFVTFENSA 62
Query: 70 SVPLAM-GLNGQKLLGIPIIVQPTQA 94
A L+G + G I V A
Sbjct: 63 DADRAREKLHGTVVEGRKIEVNNATA 88
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 68.5 bits (167), Expect = 2e-15
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 116 RLYIGSLHFNITEDMLRGI-FEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
+YI +L+ I +D L+ F + I ++ + + +G F+ F A A
Sbjct: 5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 64
Query: 175 QLNGFELAGRPMKVGTVTDRNESV 198
+ GF +PM++ ++ +
Sbjct: 65 SMQGFPFYDKPMRIQYAKTDSDII 88
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 68.1 bits (166), Expect = 3e-15
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172
G ++I +L +I L F FG I + +++ D + SKGYGF+ F + + A++A
Sbjct: 7 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 64
Query: 173 QEQLNGFELAGRPMKVGTVTDRNE 196
E++NG L R + VG R E
Sbjct: 65 IEKMNGMLLNDRKVFVGRFKSRKE 88
Score = 53.5 bits (128), Expect = 5e-10
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
S + IF L + I + L + FS+ G + +++ + ++ F+ E
Sbjct: 2 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YGFVHFETQE 59
Query: 70 SVPLAM-GLNGQKLLGIPIIVQPTQAEKNR 98
+ A+ +NG L + V ++ K R
Sbjct: 60 AAERAIEKMNGMLLNDRKVFVGRFKSRKER 89
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 68.1 bits (166), Expect = 4e-15
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+Y G + +T+ ++R F PFG+I I++ KGY F+ F + + A A
Sbjct: 20 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVS 73
Query: 176 LNGFELAGRPMKVG 189
+NG + G +K
Sbjct: 74 VNGTTIEGHVVKCY 87
Score = 46.5 bits (110), Expect = 2e-07
Identities = 14/87 (16%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 5 YSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIE 64
+ D ++ T++C ++ + + + + FS G++ ++R+ +++
Sbjct: 7 FEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVR 60
Query: 65 FKDPESVPLAM-GLNGQKLLGIPIIVQ 90
F ES A+ +NG + G +
Sbjct: 61 FSTHESAAHAIVSVNGTTIEGHVVKCY 87
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 68.1 bits (166), Expect = 4e-15
Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+ + + E++ + E +G+++ + + D G ++ F +DA+KA L
Sbjct: 30 VEMQEHYDEFFEEVFTEMEEKYGEVEEMN-VCDNLGDHLVGNVYVKFRREEDAEKAVIDL 88
Query: 177 NGFELAGRPMKV 188
N G+P+
Sbjct: 89 NNRWFNGQPIHA 100
Score = 40.8 bits (95), Expect = 2e-05
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Query: 1 MRPAYSDDLSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGI 60
+D L D + + E G+V ++ + N G
Sbjct: 15 NSSQSADGLRSAVSD---VEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCD-NLGDHLVGN 70
Query: 61 AYIEFKDPESVPLAM-GLNGQKLLGIPIIVQ 90
Y++F+ E A+ LN + G PI +
Sbjct: 71 VYVKFRREEDAEKAVIDLNNRWFNGQPIHAE 101
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 67.1 bits (163), Expect = 8e-15
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
L++ S+H ED ++ F +G+I NI L +D TG SKGY + + + A A+E
Sbjct: 9 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 68
Query: 176 LNGFELAGRPMKV 188
LNG E+ G+ ++V
Sbjct: 69 LNGAEIMGQTIQV 81
Score = 45.5 bits (107), Expect = 3e-07
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLA 74
+ +F + + + +++E F G+++++ L +T KG A +E++ + A
Sbjct: 6 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAA 65
Query: 75 M-GLNGQKLLGIPIIVQ 90
LNG +++G I V
Sbjct: 66 KEALNGAEIMGQTIQVD 82
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 66.9 bits (163), Expect = 9e-15
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
RL++G+L +ITE+ +R +FE +GK + + D +GFI + A+ A+ +
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEIAKVE 63
Query: 176 LNGFELAGRPMKV 188
L+ L G+ ++V
Sbjct: 64 LDNMPLRGKQLRV 76
Score = 41.5 bits (97), Expect = 8e-06
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM- 75
+F L I ++ + F GK +V + +I + +A
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGF------GFIRLETRTLAEIAKV 62
Query: 76 GLNGQKLLGIPIIVQ 90
L+ L G + V+
Sbjct: 63 ELDNMPLRGKQLRVR 77
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 66.6 bits (162), Expect = 1e-14
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173
P LY+G+L ++TE ++ +F G + +++ + + Y F+ F+ DA A
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAAL 65
Query: 174 EQLNGFELAGRPMKV 188
+NG ++ G+ +KV
Sbjct: 66 AAMNGRKILGKEVKV 80
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 66.2 bits (161), Expect = 2e-14
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 110 GTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDA 169
G+ G +++G ++TED LR F +G + ++ + + F+TF A
Sbjct: 1 GSSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFR-----AFAFVTFADDQIA 55
Query: 170 KKAQEQLNGFELAGRPMKVGTVTDRNESVGGGPS 203
+ + G + + ++ S G S
Sbjct: 56 QSLCG--EDLIIKGISVHISNAEPKHNSNSGPSS 87
Score = 43.9 bits (103), Expect = 1e-06
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 15 DARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLA 74
+ +F + + + +L EFFS G V DV + F+ A++ F D +
Sbjct: 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL 58
Query: 75 MGLNGQKLLGIPIIVQPTQAEKNR 98
G + GI + + + + N
Sbjct: 59 CG-EDLIIKGISVHISNAEPKHNS 81
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 66.3 bits (161), Expect = 2e-14
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKI--------DNIQLMVDPDTGRSKGYGFITFHSAD 167
+Y+ L+ ++T D L F+ G + I + +D +TG+ KG +++
Sbjct: 10 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP 69
Query: 168 DAKKAQEQLNGFELAGRPMKV 188
AK A E +G + G +KV
Sbjct: 70 TAKAAVEWFDGKDFQGSKLKV 90
Score = 46.3 bits (109), Expect = 2e-07
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCN--------KTRRFKGIAY 62
E+ D I+ L+ + DL +FF G V+ + +T + KG A
Sbjct: 3 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 62
Query: 63 IEFKDPESVPLAM-GLNGQKLLGIPIIVQPTQAEKNR 98
+ ++DP + A+ +G+ G + V + +
Sbjct: 63 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 99
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 65.9 bits (160), Expect = 3e-14
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Query: 111 TGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAK 170
P ++G+L +++TE+ ++ F + R KG+G+ F D
Sbjct: 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLL 71
Query: 171 KAQEQLNGFELAGRPMKVGTVTDRNESVGGGPSN 204
A LN L + ++V + GPS+
Sbjct: 72 SALS-LNEESLGNKRIRVDVADQAQDK-DSGPSS 103
Score = 47.4 bits (112), Expect = 1e-07
Identities = 20/85 (23%), Positives = 33/85 (38%)
Query: 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG 76
T F L + ++EFF + + R KG Y EF+D +S+ A+
Sbjct: 16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 75
Query: 77 LNGQKLLGIPIIVQPTQAEKNRAGN 101
LN + L I V +++
Sbjct: 76 LNEESLGNKRIRVDVADQAQDKDSG 100
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 65.5 bits (159), Expect = 3e-14
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+L++G L F+ E L +F +G+I + ++ D +T RS+G+GF+TF + DDAK A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 176 LNGFELAGRPMKVGTVTDRNES 197
+NG + GR ++V +++
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDN 88
Score = 50.5 bits (120), Expect = 6e-09
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 13 ERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVP 72
D +F LS + LE+ FS G++ +V ++ +T+R +G ++ F++ +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 73 LAM-GLNGQKLLGIPIIVQPTQA-EKNRA 99
AM +NG+ + G I V NR+
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRS 90
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 65.9 bits (160), Expect = 3e-14
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
++++G L ++ T+ LR FE FG I+ ++ D TG+S+GYGF+T A++A +
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 175 QLNGFELAGRPMKV 188
N + GR V
Sbjct: 71 DPNP-IIDGRKANV 83
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 65.8 bits (160), Expect = 4e-14
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 110 GTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDA 169
G +R+ + +L + +T D+L IF FG + I ++ + + A
Sbjct: 3 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSA 58
Query: 170 KKAQEQLNGFELAGRPMKV 188
+ A+ L+G + +
Sbjct: 59 QHAKLSLDGQNIYNACCTL 77
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 64.7 bits (157), Expect = 5e-14
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
LY+ +L + +E+M+ F + + Y F+ F + +DA +A +
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAV------ERVKKIRDYAFVHFSNREDAVEAMKA 63
Query: 176 LNGFELAGRPMKV 188
LNG L G P++V
Sbjct: 64 LNGKVLDGSPIEV 76
Score = 40.8 bits (95), Expect = 1e-05
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM- 75
+ ++ L +E+ F+++ + ++ + A++ F + E AM
Sbjct: 9 KILYVRNLMLSTSEEMIEKEFNNIKP------GAVERVKKIRDYAFVHFSNREDAVEAMK 62
Query: 76 GLNGQKLLGIPIIVQPTQAEKNRA 99
LNG+ L G PI V + +
Sbjct: 63 ALNGKVLDGSPIEVTLAKPVDKDS 86
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 64.4 bits (156), Expect = 6e-14
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
++++G + + E LR FE +GKI+ I++M D +G+ +G+ F+TF D K
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI- 62
Query: 176 LNGFELAGRPMKV 188
+ G +V
Sbjct: 63 QKYHTVNGHNCEV 75
Score = 45.1 bits (106), Expect = 4e-07
Identities = 15/74 (20%), Positives = 33/74 (44%)
Query: 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMG 76
+ IF + + L ++F GK+ + ++T + + +G A++ F D +SV +
Sbjct: 3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 62
Query: 77 LNGQKLLGIPIIVQ 90
+ G V+
Sbjct: 63 QKYHTVNGHNCEVR 76
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 64.3 bits (156), Expect = 9e-14
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 109 RGTGG--PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSA 166
RG G R+Y+G+L +I + +F +G I +I L + F+ F
Sbjct: 7 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG---PPFAFVEFEDP 63
Query: 167 DDAKKAQEQLNGFELAGRPMKV 188
DA+ A +G++ G ++V
Sbjct: 64 RDAEDAVYGRDGYDYDGYRLRV 85
Score = 52.8 bits (126), Expect = 1e-09
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
P + I+ L IRT+D+E+ F G +RD+ R A++EF+DP
Sbjct: 8 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDID---LKNRRGGPPFAFVEFEDPR 64
Query: 70 SVPLAM-GLNGQKLLGIPIIVQPTQAEKNR 98
A+ G +G G + V+ ++ +
Sbjct: 65 DAEDAVYGRDGYDYDGYRLRVEFPRSGRGT 94
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 63.9 bits (155), Expect = 1e-13
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+LYIG+L +T D LR +F + GY F+ + + A +A E
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLP------LAGQVLLKSGYAFVDYPDQNWAIRAIET 56
Query: 176 LNG-FELAGRPMKV 188
L+G EL G+ M+V
Sbjct: 57 LSGKVELHGKIMEV 70
Score = 42.0 bits (98), Expect = 4e-06
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 18 TIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-G 76
++ LS + DL + F + G A++++ D A+
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLA------GQVLLKSGYAFVDYPDQNWAIRAIET 56
Query: 77 LNGQ-KLLGIPIIVQPTQAEKNRA 99
L+G+ +L G + V + ++K R+
Sbjct: 57 LSGKVELHGKIMEVDYSVSKKLRS 80
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 63.7 bits (154), Expect = 1e-13
Identities = 13/73 (17%), Positives = 32/73 (43%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
L++ + + T+ +R + + + + S+ + +I S +DA+ E+
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 176 LNGFELAGRPMKV 188
LNG ++ G +
Sbjct: 63 LNGLKIEGYTLVT 75
Score = 41.7 bits (97), Expect = 7e-06
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM- 75
T++ R++ + + V + + + AYI+ E +
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 76 GLNGQKLLGIPIIVQ 90
LNG K+ G ++ +
Sbjct: 62 KLNGLKIEGYTLVTK 76
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 62.5 bits (151), Expect = 4e-13
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 103 LPNLQPRGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFI 161
+P G P + LY+ +L +TE L +F F + + TGR +G FI
Sbjct: 6 IPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFI 65
Query: 162 TFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNE 196
TF + + A +A +NG++L G+ + + ++ +
Sbjct: 66 TFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 100
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 62.1 bits (150), Expect = 5e-13
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
++I +L F+ E+ L + + FG + +++++ PDT SKG F F + + A+K
Sbjct: 10 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 69
Query: 176 LN------GFELAGRPMKVGTVTDRNES 197
+ G +L GR +KV R+E+
Sbjct: 70 ASLEAEGGGLKLDGRQLKVDLAVTRDEA 97
Score = 43.6 bits (102), Expect = 2e-06
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 9 LSPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDP 68
L + + +T+F LS L E G ++ VR++ T KG A+ +F
Sbjct: 1 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQ 60
Query: 69 ESVPLAM-------GLNGQKLLGIPIIVQPTQAEKNRA 99
E+ + G KL G + V A
Sbjct: 61 EAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAA 98
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 63.0 bits (152), Expect = 8e-13
Identities = 30/119 (25%), Positives = 58/119 (48%)
Query: 90 QPTQAEKNRAGNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVD 149
Q Q ++ + + P L + + + E LR +FE +G I++++++ D
Sbjct: 18 QLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCD 77
Query: 150 PDTGRSKGYGFITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVGGGPSNLDTD 208
+T +S+GYGF+ F S A++A LNGF + + +KV ++ G + D +
Sbjct: 78 RETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPGIAGAVGDGN 136
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 61.5 bits (149), Expect = 9e-13
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKA 172
PM L N + LR FG+I + G ++F ++A
Sbjct: 18 HPMDFEDDPLVLNEIREDLRVECSKFGQIRK----LLLFDRHPDGVASVSFRDPEEADYC 73
Query: 173 QEQLNGFELAGRPMKV 188
+ L+G GR +
Sbjct: 74 IQTLDGRWFGGRQITA 89
Score = 42.6 bits (100), Expect = 4e-06
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 32 DLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGIPIIVQ 90
DL S G++R + L R G+A + F+DPE + L+G+ G I Q
Sbjct: 35 DLRVECSKFGQIRKLLLFD----RHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQ 90
Score = 35.7 bits (82), Expect = 0.001
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 269 ATQCFLLANMFDPAT-ETNPTWDVEIRDDVIEECNKH 304
+ ++ NMF P E +P EIR+D+ EC+K
Sbjct: 7 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF 43
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 61.7 bits (149), Expect = 1e-12
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+++G++ + TE+ L+ IF G + + +L+ D +TG+ KGYGF + + A A
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 176 LNGFELAGRPMKVGTVTDRNE-----SVGGGP 202
LNG E +GR ++V S+G G
Sbjct: 70 LNGREFSGRALRVDNAASEKNKEELKSLGTGA 101
Score = 60.9 bits (147), Expect = 2e-12
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPES 70
+R R++F + L++ FS VG V RL+ +T + KG + E++D E+
Sbjct: 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 62
Query: 71 VPLAM-GLNGQKLLGIPIIVQPTQAEKNRAGNTLPNLQPRGTGGPM 115
AM LNG++ G + V +EKN+ L+ GTG P+
Sbjct: 63 ALSAMRNLNGREFSGRALRVDNAASEKNK-----EELKSLGTGAPV 103
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 59.8 bits (144), Expect = 2e-12
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
LYI L T+ L + +P+GKI + + ++D T + KGYGF+ F S A+KA L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 177 NGFELAGRPMK 187
+ + K
Sbjct: 61 KASGVQAQMAK 71
Score = 38.2 bits (88), Expect = 9e-05
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 19 IFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM-GL 77
++ L +DL + GK+ + I T + KG +++F P + A+ L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 78 NGQKLLG 84
+
Sbjct: 61 KASGVQA 67
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 60.6 bits (146), Expect = 2e-12
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQE 174
+ +I ++ F+IT+ + E +N ++ + G+ G + F + DDA+K++
Sbjct: 9 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER 68
Query: 175 QLNGFELAGRPMKVGTVTDR 194
L+ +L GR V VT
Sbjct: 69 -LHRKKLNGREAFVHVVTLE 87
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 59.4 bits (143), Expect = 6e-12
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 110 GTGGPMRLYIGSLHFNITEDM-----LRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFH 164
G+ G L + ++ + +F + K Q +S I F
Sbjct: 1 GSSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF------KSFKRVRINFS 54
Query: 165 SADDAKKAQEQLNGFELAGRPMKV 188
+ A A+ +L+ E G+ MK+
Sbjct: 55 NPLSAADARLRLHKTEFLGKEMKL 78
Score = 35.9 bits (82), Expect = 0.001
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 12/93 (12%)
Query: 18 TIFCMQLSQRIRT-----RDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVP 72
+ + + + E F + K + I F +P S
Sbjct: 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAA 60
Query: 73 LAM-GLNGQKLLGIPIIVQPTQAEKNRAGNTLP 104
A L+ + LG + + Q + + P
Sbjct: 61 DARLRLHKTEFLGKEMKLYFAQTLHIGSSHLAP 93
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 59.0 bits (142), Expect = 6e-12
Identities = 14/95 (14%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 110 GTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDA 169
G+ G + + +L + + + + + + R+K F+T + + A
Sbjct: 1 GSSGSSGILVKNLPQDSNCQEVHDLLKDYD-------LKYCYVDRNKRTAFVTLLNGEQA 53
Query: 170 KKAQEQLNGFELAGRPMKVGTVTDRNESVGGGPSN 204
+ A + + + G+ + V + + + GPS+
Sbjct: 54 QNAIQMFHQYSFRGKDLIV-QLQPTDALLCSGPSS 87
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 57.5 bits (138), Expect = 2e-11
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 116 RLYIGSLHFNITEDMLRGIFE---PFGKIDNIQLMVDPDTGRS---KGYGFITFHSADDA 169
+++ L + + + E FGKI + + S ++T+ ++DA
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 170 KKAQEQLNGFELAGRPMKV 188
+A + +N + GR +K
Sbjct: 70 LRAIQCVNNVVVDGRTLKA 88
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 57.9 bits (139), Expect = 3e-11
Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Query: 100 GNTLPNLQPRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYG 159
G++ + T + + L F +++ + F + N + GRS G
Sbjct: 1 GSSGSSGNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEA 60
Query: 160 FITFHSADDAKKAQEQLNGFELAGRPMKVGTVTDRNESVGGGPS 203
F+ F S + A+KA + + + R +++ + G S
Sbjct: 61 FVQFASQEIAEKA-LKKHKERIGHRYIEIFKSSRAEVRTSGPSS 103
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 57.1 bits (137), Expect = 3e-11
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 116 RLYIGSLHFNIT-EDMLRGIFEPFGKIDNIQLMVD-PDTGRSKGYGFITFHSADDAKKAQ 173
+ I +L + E++LR FE FG I+ I + + + F+ F + D A++A
Sbjct: 6 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 65
Query: 174 EQLNGFELAGRPMKV 188
+ +N L R + V
Sbjct: 66 Q-MNRSLLGNREISV 79
Score = 43.6 bits (102), Expect = 2e-06
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 15 DARTIFCMQLSQRIRTRDLEE--FFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVP 72
+ R I LS + +L F + + A++ F++ +S
Sbjct: 3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 62
Query: 73 LAMGLNGQKLLGIPIIVQ 90
A+ +N L I V
Sbjct: 63 RALQMNRSLLGNREISVS 80
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 57.1 bits (137), Expect = 3e-11
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173
P LYI +L ++ E L + +PFG++ + ++ +G S+G GF S + +
Sbjct: 18 PTNLYISNLPLSMDEQELENMLKPFGQVIS-TRILRDSSGTSRGVGFARMESTEKCEAVI 76
Query: 174 EQLNGFELAGRPMKVG 189
NG + P
Sbjct: 77 GHFNGKFIKTPPGVSA 92
Score = 44.4 bits (104), Expect = 1e-06
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPES 70
+E+D ++ L + ++LE G+V R I + + +G+ + + E
Sbjct: 13 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR-ILRDSSGTSRGVGFARMESTEK 71
Query: 71 VPLAM-GLNGQKLLGIPIIVQPTQ 93
+ NG+ + P + PT+
Sbjct: 72 CEAVIGHFNGKFIKTPPGVSAPTE 95
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 56.5 bits (136), Expect = 6e-11
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGF--ITFHSADDAKKAQEQLNGF 179
+ + +R +G + +I++ D G G + F S D +KA + L G
Sbjct: 22 EEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 81
Query: 180 ELAGRPMKV 188
+ A R +
Sbjct: 82 KFANRVVVT 90
Score = 40.0 bits (93), Expect = 4e-05
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 266 PPIATQCFLLANMFDPATETNPTWDVEIRDDVIEECNKH 304
P T+ L NM P + EI +DV +EC+K+
Sbjct: 2 HP--TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY 38
Score = 36.5 bits (84), Expect = 8e-04
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 32 DLEEFFSSVGKVRDVRLIT--CNKTRRFKGIAYIEFKDPESVPLAM-GLNGQKLLGIPII 88
D+ + S G V+ + + G ++EF AM GL G+K ++
Sbjct: 30 DVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVV 89
Query: 89 VQPTQAEKNRAGN 101
+ + +
Sbjct: 90 TKYCDPDSYHRRD 102
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 55.9 bits (134), Expect = 1e-10
Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 7/96 (7%)
Query: 108 PRGTGGPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSAD 167
P R+ + L + + L+ G + + D G + + +
Sbjct: 9 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-------MGMVEYLRKE 61
Query: 168 DAKKAQEQLNGFELAGRPMKVGTVTDRNESVGGGPS 203
D + A +L+ + + + E G S
Sbjct: 62 DMEYALRKLDDTKFRSHEGETSYIRVYPERSSGPSS 97
Score = 36.7 bits (84), Expect = 5e-04
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 8/91 (8%)
Query: 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPES 70
P R + L +DL++ C + G+ +E+ E
Sbjct: 10 PTRRSDFRVLVSGLPPSGSWQDLKDHMRE-------AGDVCYADVQKDGMGMVEYLRKED 62
Query: 71 VPLAM-GLNGQKLLGIPIIVQPTQAEKNRAG 100
+ A+ L+ K + R+
Sbjct: 63 MEYALRKLDDTKFRSHEGETSYIRVYPERSS 93
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 55.5 bits (133), Expect = 2e-10
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+ G L ++ + L + E G +D + + + Y F + + +++K+A L
Sbjct: 23 VANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARYRTTEESKRAYVTL 76
Query: 177 NGFEL-AGRPMKV 188
NG E+ K+
Sbjct: 77 NGKEVVDDLGQKI 89
Score = 35.9 bits (82), Expect = 0.001
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 17 RTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAM- 75
+ L + L G V + + ++ ++ E A
Sbjct: 21 LVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPY------SFARYRTTEESKRAYV 74
Query: 76 GLNGQKLL---GIPIIVQPTQAEK 96
LNG++++ G I + EK
Sbjct: 75 TLNGKEVVDDLGQKITLYLNFVEK 98
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 54.3 bits (130), Expect = 2e-10
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
LY+ ++T +LRG F PFG I ++ + F+T+ + A +A +
Sbjct: 7 TLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESADQAVAE 58
Query: 176 LNGFELAGRPMKV 188
LNG ++ +KV
Sbjct: 59 LNGTQVESVQLKV 71
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 53.0 bits (126), Expect = 1e-09
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173
P L+IG+L+ N + L+ +++ ++ TG ++ +G++ F SA+D +KA
Sbjct: 13 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYVDFESAEDLEKAL 71
Query: 174 EQLNGFELAGRPMKVGTVTDR 194
+L G ++ G +K+ R
Sbjct: 72 -ELTGLKVFGNEIKLEKPKGR 91
Score = 43.4 bits (101), Expect = 2e-06
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
E +F L+ +L+ S + D+ + +T + Y++F+ E
Sbjct: 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLA-VVDVRTGTNRKFGYVDFESAE 65
Query: 70 SVPLAMGLNGQKLLGIPIIVQPTQ 93
+ A+ L G K+ G I ++ +
Sbjct: 66 DLEKALELTGLKVFGNEIKLEKPK 89
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 52.4 bits (125), Expect = 2e-09
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
RL++G L N + L F+ FG I I + + +I + S D A+ A +
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS------FAYIQYESLDAAQAACAK 72
Query: 176 LNGFELAGRPMKV 188
+ GF L G ++
Sbjct: 73 MRGFPLGGPDRRL 85
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 52.0 bits (124), Expect = 2e-09
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+YI + T D ++ E G++ NIQ M KG F+ F S + AKK E
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQ-MRRTLHKAFKGSIFVVFDSIESAKKFVE- 65
Query: 176 LNGFELAGRPMKV 188
G + + +
Sbjct: 66 TPGQKYKETDLLI 78
Score = 47.0 bits (111), Expect = 9e-08
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 12 EERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESV 71
+ R+++ D++E+ G+V +++ + + FKG ++ F ES
Sbjct: 2 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ-MRRTLHKAFKGSIFVVFDSIESA 60
Query: 72 PLAMGLNGQKLLGIPIIVQP 91
+ GQK +++
Sbjct: 61 KKFVETPGQKYKETDLLILF 80
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 52.1 bits (124), Expect = 3e-09
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+++ L + TE+ + F P + + GR G + F + +DA A
Sbjct: 18 VHMRGLPYRATENDIYNFFSPLNPMRVH--IEIGPDGRVTGEADVEFATHEDAVAAMA-K 74
Query: 177 NGFELAGRPMKVGTVTDRNESVGGGPS 203
+ + R +++ + + G GPS
Sbjct: 75 DKANMQHRYVELFLNSTA-GTSGSGPS 100
Score = 39.7 bits (92), Expect = 5e-05
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 3/94 (3%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
S + + L R D+ FFS + +R I + A +EF E
Sbjct: 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTG--EADVEFATHE 66
Query: 70 SVPLAMGLNGQKLLGIPIIVQP-TQAEKNRAGNT 102
AM + + + + + A + +G +
Sbjct: 67 DAVAAMAKDKANMQHRYVELFLNSTAGTSGSGPS 100
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 49.8 bits (118), Expect = 2e-08
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 113 GPMRLYIGSLHF-NITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKK 171
G L + +L+ +T L +F +G + ++++ + + + A+
Sbjct: 1 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE-----NALVQMADGNQAQL 55
Query: 172 AQEQLNGFELAGRPMKV 188
A LNG +L G+P+++
Sbjct: 56 AMSHLNGHKLHGKPIRI 72
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 47.9 bits (113), Expect = 9e-08
Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 7/85 (8%)
Query: 113 GPMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHS-ADDAKK 171
G + + G L + L +F G+I I + G I F A +A
Sbjct: 10 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALG 63
Query: 172 AQEQLNGFELAGRPMKVGTVTDRNE 196
+ N L R +V E
Sbjct: 64 KAKDANNGNLQLRNKEVTWEVLEGE 88
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 47.1 bits (111), Expect = 1e-07
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+++ L ++ E L E FG I + +M + F + D AK+
Sbjct: 18 VHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR------QALVEFENIDSAKECVTFA 71
Query: 177 --NGFELAGRPMKV 188
+AG+
Sbjct: 72 ADVPVYIAGQQAFF 85
Score = 31.3 bits (70), Expect = 0.043
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 10/100 (10%)
Query: 10 SPEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPE 69
+ + + L + + DL E G + V ++ + A +EF++ +
Sbjct: 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR------QALVEFENID 62
Query: 70 SVPLA---MGLNGQKLLGIPIIVQP-TQAEKNRAGNTLPN 105
S + G T R GN+ P+
Sbjct: 63 SAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNSGPS 102
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 47.2 bits (111), Expect = 1e-07
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 114 PMRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQ 173
+Y+ L F + F+ +++ + G++ G GF+ F + D K A
Sbjct: 18 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 77
Query: 174 EQLNGFELAGRPMKVGTVTDRN 195
+ + R ++V +T +
Sbjct: 78 C-RHKQYMGNRFIQVHPITKKG 98
Score = 43.0 bits (100), Expect = 4e-06
Identities = 14/88 (15%), Positives = 29/88 (32%)
Query: 11 PEERDARTIFCMQLSQRIRTRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPES 70
++ L + + +FF + V D I + G ++EF++
Sbjct: 13 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEAD 72
Query: 71 VPLAMGLNGQKLLGIPIIVQPTQAEKNR 98
A+ + Q + I V P +
Sbjct: 73 YKAALCRHKQYMGNRFIQVHPITKKGML 100
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 46.3 bits (109), Expect = 2e-07
Identities = 12/73 (16%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
L++ ++ +++E+ L+ +F G + + + + I S ++A +A L
Sbjct: 13 LHLSNIPPSVSEEDLKVLFSSNGGV----VKGFKFFQKDRKMALIQMGSVEEAVQALIDL 68
Query: 177 NGFELA-GRPMKV 188
+ +L ++V
Sbjct: 69 HNHDLGENHHLRV 81
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 45.6 bits (107), Expect = 2e-07
Identities = 11/76 (14%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+ + +L + ++ + F+ G I ++ + ++ + I F D A A +
Sbjct: 3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVA--DSLKKNFRFARIEFARYDGALAAITK- 59
Query: 177 NGFELAGRPMKVGTVT 192
+ + V +T
Sbjct: 60 THKVVGQNEIIVSHLT 75
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 43.8 bits (103), Expect = 1e-06
Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 9/79 (11%)
Query: 118 YIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQLN 177
+ +L F +G I + + + I + S A+KA +
Sbjct: 8 TVFGFPQASASYILL-QFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKAL-SKD 59
Query: 178 GFELAGRPM-KVGTVTDRN 195
G M V D+N
Sbjct: 60 GRIFGESIMIGVKPCIDKN 78
Score = 33.0 bits (75), Expect = 0.008
Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Query: 30 TRDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPII- 88
+ F+ G + +I ++ A+ +G+ +I
Sbjct: 17 ASYILLQFAQYGNILKHV------MSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIG 70
Query: 89 VQPTQ 93
V+P
Sbjct: 71 VKPCI 75
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 43.7 bits (102), Expect = 1e-06
Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 7/81 (8%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
R+ + L + + L+ G + + D G + F +D A +
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG-------TGVVEFVRKEDMTYAVRK 54
Query: 176 LNGFELAGRPMKVGTVTDRNE 196
L+ + + + + +
Sbjct: 55 LDNTKFRSHEGETAYIRVKVD 75
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 43.1 bits (101), Expect = 2e-06
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 5/73 (6%)
Query: 117 LYIGSL-HFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
++I L + EPFG I N ++ + + + A
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINE----AFIEMATTEDAQAAVDYYT 66
Query: 176 LNGFELAGRPMKV 188
+ G+P++V
Sbjct: 67 TTPALVFGKPVRV 79
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 42.9 bits (100), Expect = 3e-06
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 109 RGTGGPMR-LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSAD 167
+ G P R L+I L +TE + + PFGK+ NI ++ + F+ + +
Sbjct: 2 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKN------QAFLELATEE 55
Query: 168 DAKKAQE--QLNGFELAGRPMKV 188
A L +P+ +
Sbjct: 56 AAITMVNYYSAVTPHLRNQPIYI 78
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 42.5 bits (99), Expect = 3e-06
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 116 RLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
L++ +L E ML +F F ++L+ + F+ F + + A+E
Sbjct: 10 ILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHD-----IAFVEFTTELQSNAAKEA 64
Query: 176 LNGFEL-AGRPMKV 188
L GF++ MK+
Sbjct: 65 LQGFKITPTHAMKI 78
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 40.7 bits (94), Expect = 1e-05
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+ I L ++T + + + + + KG F+T + + A+ A
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYE-------LKYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 177 NGFELAGRPMKV 188
+ L R + V
Sbjct: 54 HQSRLRERELSV 65
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 41.5 bits (96), Expect = 1e-05
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 117 LYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQL 176
+ +L ++ F FG + + L + F +A+KA L
Sbjct: 13 ILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG------ITAIVEFLEPLEARKAFRHL 66
Query: 177 NGFELAGRPMKV 188
+ P+ +
Sbjct: 67 AYSKFHHVPLYL 78
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 31.9 bits (71), Expect = 0.028
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 117 LYIGSL-HFNITEDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITFHSADDAKKAQEQ 175
+++ +L H ++ + + EP+GKI N LM FI + +DA +
Sbjct: 21 IHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK------SQAFIEMETREDAMAMVDH 74
Query: 176 LN--GFELAGRPMKV 188
GR +KV
Sbjct: 75 CLKKALWFQGRCVKV 89
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE
{Escherichia coli [TaxId: 562]}
Length = 267
Score = 28.4 bits (63), Expect = 1.2
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 128 EDMLRGIFEPFGKIDNIQLMVDPDTGRSKGYGFITF-HSADDAKKAQEQLNGF 179
D+ R I K+ + Y T +A +++AQ L+G+
Sbjct: 76 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGY 128
>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 26.5 bits (58), Expect = 1.6
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 272 CFLLANMFDPATETNPTWDVEIRDDVIEECNKHGVGASTVC--FI--YSVIFLKLWSYVQ 327
C + A TN T+ + + V EEC++ G G + +C +I YS I +++ ++Q
Sbjct: 7 CIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMMHMQ 66
Query: 328 VNLWCRH 334
C
Sbjct: 67 PKEICAL 73
>d2od6a1 d.58.4.22 (A:1-109) Hypothetical protein GOS_2359375
{environmental samples}
Length = 109
Score = 26.7 bits (59), Expect = 1.7
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 35 EFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPES 70
+ S G ++ NK F+ + E+KD S
Sbjct: 36 KEMKSRGLLKFSMNRVWNKGEVFRVVMTYEYKDRAS 71
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 95
Score = 25.9 bits (57), Expect = 2.6
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 32 DLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDPESVPLAMGLNGQKLLGIPIIV 89
+L + S G + VR+ G + F D S + ++G K+ G + +
Sbjct: 40 ELMQTLGSYGTIVLVRINQ--------GQMLVTFADSHSALSVLDVDGMKVKGRAVKI 89
>d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of
bifunctional purine biosynthesis enzyme ATIC {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 393
Score = 27.1 bits (59), Expect = 3.9
Identities = 7/15 (46%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 293 IRDD-VIEECNKHGV 306
D+ VIE CN+ G+
Sbjct: 367 AADEVVIEACNELGI 381
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine
max), isozyme L1 [TaxId: 3847]}
Length = 143
Score = 25.9 bits (57), Expect = 5.5
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 122 LHFNITEDMLRGIFEPFGKIDNIQLM---VDPDTGRSK 156
L N + + G+ ++QL+ G+ K
Sbjct: 14 LEVNPDGSAVDNLNAFLGRSVSLQLISATKADAHGKGK 51
>d1zcza2 c.97.1.4 (A:158-452) AICAR transformylase domain of
bifunctional purine biosynthesis enzyme ATIC {Thermotoga
maritima [TaxId: 2336]}
Length = 295
Score = 26.3 bits (57), Expect = 5.8
Identities = 7/15 (46%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 293 IRDD-VIEECNKHGV 306
IRD+ VIE+ + G+
Sbjct: 269 IRDEEVIEKARELGI 283
>d1vkpa_ d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 372
Score = 26.2 bits (57), Expect = 6.7
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 115 MRLYIGSLHFNITEDMLRGIFEPFGKIDNIQLMVDPDT 152
++ Y+G F L G + G IDN+ P
Sbjct: 195 LKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGV 232
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli
[TaxId: 562]}
Length = 159
Score = 25.8 bits (56), Expect = 7.0
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 7 DDLSPEERDARTIFCMQLSQRIRTRDLEEFF 37
+ E+ QL + + T D ++FF
Sbjct: 129 GRFTDEDEQGLRQLVAQLEKVLATTDYKKFF 159
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.398
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,353,493
Number of extensions: 63276
Number of successful extensions: 379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 163
Length of query: 370
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 283
Effective length of database: 1,213,086
Effective search space: 343303338
Effective search space used: 343303338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)