Query psy2984
Match_columns 228
No_of_seqs 191 out of 425
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 22:33:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ug3_A EIF4GI, eukaryotic prot 98.7 8.5E-09 2.9E-13 93.2 3.9 75 1-79 172-248 (339)
2 3l6a_A Eukaryotic translation 98.6 2.4E-08 8.3E-13 91.5 3.3 68 1-78 169-236 (364)
3 1paq_A Translation initiation 93.1 0.16 5.6E-06 41.9 6.1 43 37-79 21-63 (189)
4 3d3m_A Eukaryotic translation 87.3 0.39 1.3E-05 38.7 3.2 38 41-78 3-40 (168)
5 3jui_A Translation initiation 79.8 3.3 0.00011 33.8 5.8 41 39-79 15-55 (182)
6 2kw0_A CCMH protein; oxidoredu 67.0 6.6 0.00023 28.8 4.1 37 36-72 39-75 (90)
7 2hl7_A Cytochrome C-type bioge 65.5 6.7 0.00023 28.4 3.9 36 36-71 42-77 (84)
8 1use_A VAsp, vasodilator-stimu 52.7 35 0.0012 21.8 5.1 31 35-71 13-43 (45)
9 3oio_A Transcriptional regulat 46.3 34 0.0012 24.5 5.1 33 10-43 36-69 (113)
10 4ddj_A Saposin-A, protein A; s 46.1 67 0.0023 21.8 6.9 37 38-74 8-44 (83)
11 3mkl_A HTH-type transcriptiona 45.9 36 0.0012 24.7 5.2 32 10-42 36-67 (120)
12 1w53_A Phosphoserine phosphata 45.4 71 0.0024 22.9 6.5 70 14-84 3-72 (84)
13 3gbg_A TCP pilus virulence reg 44.1 38 0.0013 27.8 5.7 33 10-43 198-230 (276)
14 2j6y_A Phosphoserine phosphata 40.5 98 0.0034 23.4 6.9 59 24-83 12-71 (111)
15 3lsg_A Two-component response 34.8 83 0.0028 21.8 5.6 33 10-43 32-65 (103)
16 3he5_B Synzip2; heterodimeric 32.9 95 0.0032 19.7 5.2 37 28-69 6-42 (52)
17 1bl0_A Protein (multiple antib 31.5 71 0.0024 23.4 4.9 33 10-43 40-73 (129)
18 3bqp_A Proactivator polypeptid 31.3 47 0.0016 22.2 3.5 36 38-73 7-42 (80)
19 3oao_A Uncharacterized protein 30.4 62 0.0021 25.5 4.5 22 13-34 75-96 (147)
20 3ou5_A Serine hydroxymethyltra 28.6 14 0.00047 35.0 0.4 64 11-74 415-486 (490)
21 1r4w_A Glutathione S-transfera 28.4 70 0.0024 25.7 4.7 40 10-49 134-175 (226)
22 1h1j_S THO1 protein; SAP domai 27.9 39 0.0013 21.9 2.4 42 7-58 6-47 (51)
23 3rfi_A Asp; PSI, saposin, hydr 27.6 44 0.0015 24.5 3.1 34 37-70 74-107 (108)
24 1lko_A Rubrerythrin all-iron(I 27.0 55 0.0019 26.4 3.8 27 13-39 29-55 (191)
25 2qyp_A Proactivator polypeptid 26.3 61 0.0021 22.6 3.5 36 38-73 10-45 (91)
26 2f6m_A Suppressor protein STP2 25.5 1.3E+02 0.0045 20.5 4.9 51 42-92 4-56 (65)
27 1ukx_A GCN2, GCN2 EIF2alpha ki 25.3 92 0.0032 23.1 4.6 36 39-74 95-133 (137)
28 1nkl_A NK-lysin; saposin fold, 24.8 1.3E+02 0.0046 20.3 5.0 34 38-71 6-39 (78)
29 1j30_A 144AA long hypothetical 22.9 72 0.0025 24.1 3.6 26 13-38 29-54 (144)
30 2k9s_A Arabinose operon regula 22.7 1E+02 0.0035 21.6 4.2 33 10-43 33-66 (107)
31 3oou_A LIN2118 protein; protei 22.7 1.3E+02 0.0046 20.9 4.9 32 10-42 34-66 (108)
32 1whu_A Polynucleotide phosphor 22.3 2.2E+02 0.0075 20.4 6.6 57 12-68 16-80 (104)
33 3shg_B VBHA; ampylation, adeny 21.9 1.5E+02 0.0053 20.0 4.5 29 41-69 31-59 (61)
34 1n69_A Saposin B; lipid bindin 21.9 1.9E+02 0.0065 19.5 6.7 33 39-71 9-42 (81)
35 2gtg_A Proactivator polypeptid 21.8 1.2E+02 0.0042 20.3 4.4 35 38-74 9-43 (83)
36 1l9l_A Granulysin; saposin fol 21.3 84 0.0029 21.5 3.3 33 38-71 6-38 (74)
37 1d5y_A ROB transcription facto 21.0 1.3E+02 0.0044 24.6 5.1 34 10-44 32-66 (292)
38 3f7c_A Protein of unknown func 20.9 2E+02 0.007 23.7 6.1 64 10-73 126-192 (200)
39 1yo3_A Dynein light chain 1; s 20.5 1.5E+02 0.005 21.7 4.7 35 39-73 31-65 (102)
No 1
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=98.68 E-value=8.5e-09 Score=93.22 Aligned_cols=75 Identities=21% Similarity=0.280 Sum_probs=61.1
Q ss_pred CCCCCCCCCChHHHHHHHhhcCchHHHHHHHHHHhH--HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCChhHHH
Q psy2984 1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQ--EAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELI 78 (228)
Q Consensus 1 leffP~~kRs~~~f~~~F~~~gL~el~~~~~k~~~~--~~kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~~iPe~e~v 78 (228)
++|||+++| ++++|+++||+.+++++.+++++ ..+++++++|+++++++.+.++|+..|++-+.++.+++++++
T Consensus 172 ~~f~P~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~~i~~~~~~~~~~~~~~~ 247 (339)
T 1ug3_A 172 KEFLPEGQD----IGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLV 247 (339)
T ss_dssp GGTSCTTCC----HHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCHHHHTCHHHH
T ss_pred HHhCCCchh----HHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhcCChhhCChHHHH
Confidence 479999998 78899999999999999988887 678999999999999999999999999999999999988876
Q ss_pred H
Q psy2984 79 V 79 (228)
Q Consensus 79 f 79 (228)
.
T Consensus 248 ~ 248 (339)
T 1ug3_A 248 R 248 (339)
T ss_dssp H
T ss_pred H
Confidence 3
No 2
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=98.55 E-value=2.4e-08 Score=91.53 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=62.7
Q ss_pred CCCCCCCCCChHHHHHHHhhcCchHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCChhHHH
Q psy2984 1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELI 78 (228)
Q Consensus 1 leffP~~kRs~~~f~~~F~~~gL~el~~~~~k~~~~~~kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~~iPe~e~v 78 (228)
.+|+|+++|+.+++.++|+++||+.++. .++++++|.++++++.+.++|+..|++-+++..+|+.++|
T Consensus 169 ~~FlPe~~~~~~~~~e~~~~~~L~~l~~----------~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fi 236 (364)
T 3l6a_A 169 QKMLPEIDQNKDRMLEILEGKGLSFLFP----------LLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFV 236 (364)
T ss_dssp GGGSCGGGCSHHHHHHHHHHHTCGGGCH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHH
T ss_pred HHhCCccccchhHHHHHHHhCCCcccCC----------HHHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHH
Confidence 3799999999999999999999999974 4699999999999999999999999999999888987665
No 3
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=93.13 E-value=0.16 Score=41.87 Aligned_cols=43 Identities=9% Similarity=0.195 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCChhHHHH
Q psy2984 37 EAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIV 79 (228)
Q Consensus 37 ~~kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~~iPe~e~vf 79 (228)
.-++|++++|++.+++|.+.++++..++.....+++|++|++.
T Consensus 21 ~F~~Ev~~sL~r~~~e~~~~d~iilEin~lr~a~n~s~~ev~~ 63 (189)
T 1paq_A 21 DFEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRI 63 (189)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3588999999999999999999999999999999999988764
No 4
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=87.26 E-value=0.39 Score=38.74 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCChhHHH
Q psy2984 41 ELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELI 78 (228)
Q Consensus 41 eL~~~L~~~i~~~~~~~eII~~vk~~~~~~~iPe~e~v 78 (228)
++|++|.+++++|.++++|+..+++-......|++|++
T Consensus 3 ~~~~~L~~~l~~~~~~~~i~~~i~en~~~~~~s~~ev~ 40 (168)
T 3d3m_A 3 KLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFV 40 (168)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHSCGGGGGCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCCcccCCHHHHH
Confidence 78999999999999999999999987776666666655
No 5
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=79.76 E-value=3.3 Score=33.76 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCChhHHHH
Q psy2984 39 KKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIV 79 (228)
Q Consensus 39 kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~~iPe~e~vf 79 (228)
.+|.+.+|++.+++|.+.+.++..++.....+++|++||..
T Consensus 15 ~~Ev~~sl~ra~~e~~~~d~~~LEinslr~a~N~s~~eV~~ 55 (182)
T 3jui_A 15 QNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQ 55 (182)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 67899999999999999999999999999999999999874
No 6
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=66.97 E-value=6.6 Score=28.84 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCC
Q psy2984 36 QEAKKELQEQLEEQISEGASIKDIVADIREIANKHCI 72 (228)
Q Consensus 36 ~~~kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~~i 72 (228)
...-++|+..+.+++.+|++-+||+++..+.--++.+
T Consensus 39 A~iA~dlR~~Vre~l~~G~Sd~eI~~~mv~RYGdfVl 75 (90)
T 2kw0_A 39 SMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNFVT 75 (90)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTCB
T ss_pred cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCeEE
Confidence 4567889999999999999999999999887766554
No 7
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=65.51 E-value=6.7 Score=28.39 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcC
Q psy2984 36 QEAKKELQEQLEEQISEGASIKDIVADIREIANKHC 71 (228)
Q Consensus 36 ~~~kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~~ 71 (228)
...-++|+.++.+++.+|++-+||+++..+.--++.
T Consensus 42 a~iA~dlR~~V~~~l~~G~sd~eI~~~~v~RYG~fV 77 (84)
T 2hl7_A 42 APIAADLRKQIYGQLQQGKSDGEIVDYMVARYGDFV 77 (84)
T ss_dssp SHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCee
Confidence 456788999999999999999999999988765554
No 8
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=52.71 E-value=35 Score=21.85 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcC
Q psy2984 35 SQEAKKELQEQLEEQISEGASIKDIVADIREIANKHC 71 (228)
Q Consensus 35 ~~~~kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~~ 71 (228)
.++..+|++++|+.+ -.|||+.+++...+..
T Consensus 13 KqEIL~E~RkElqK~------K~EIIeAi~~El~~~~ 43 (45)
T 1use_A 13 KQELLEEVKKELQKV------KEEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcC
Confidence 345555666666654 2378999988776643
No 9
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=46.30 E-value=34 Score=24.46 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=23.1
Q ss_pred ChHHHHHHHhhc-CchHHHHHHHHHHhHHHHHHHH
Q psy2984 10 SDEYFRTVFEEK-GLADIVKLHMAQASQEAKKELQ 43 (228)
Q Consensus 10 s~~~f~~~F~~~-gL~el~~~~~k~~~~~~kkeL~ 43 (228)
|..+|...|++. |.+ ..+|.....-+.+++.|.
T Consensus 36 S~~~l~r~fk~~~G~s-~~~~~~~~Rl~~A~~lL~ 69 (113)
T 3oio_A 36 SRRQLERLFKQYLGTV-PSKYYLELRLNRARQLLQ 69 (113)
T ss_dssp CHHHHHHHHHHHTSSC-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHHH
Confidence 566778888886 664 667777777777766654
No 10
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*
Probab=46.11 E-value=67 Score=21.82 Aligned_cols=37 Identities=11% Similarity=0.199 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCh
Q psy2984 38 AKKELQEQLEEQISEGASIKDIVADIREIANKHCIPD 74 (228)
Q Consensus 38 ~kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~~iPe 74 (228)
.-+.+.+.+++++.++.+.++|+.++....++.+.|.
T Consensus 8 ~C~~~v~~~~~~l~~n~t~~~I~~~l~~~C~~lp~~~ 44 (83)
T 4ddj_A 8 ICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPN 44 (83)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTSCTTH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHhCCCch
Confidence 3567788999999999999999999999999877663
No 11
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=45.94 E-value=36 Score=24.67 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=19.2
Q ss_pred ChHHHHHHHhhcCchHHHHHHHHHHhHHHHHHH
Q psy2984 10 SDEYFRTVFEEKGLADIVKLHMAQASQEAKKEL 42 (228)
Q Consensus 10 s~~~f~~~F~~~gL~el~~~~~k~~~~~~kkeL 42 (228)
|..+|...|++.|++ ..+|.....-+.+++.|
T Consensus 36 S~~~l~r~fk~~G~s-~~~~~~~~Rl~~A~~lL 67 (120)
T 3mkl_A 36 SPSLLKKKLREEETS-YSQLLTECRMQRALQLI 67 (120)
T ss_dssp CHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHH
Confidence 455666677766654 55666666655555544
No 12
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=45.41 E-value=71 Score=22.90 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=45.9
Q ss_pred HHHHHhhcCchHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCChhHHHHhhcch
Q psy2984 14 FRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLNMDV 84 (228)
Q Consensus 14 f~~~F~~~gL~el~~~~~k~~~~~~kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~~iPe~e~vf~~~~~ 84 (228)
|.+-|++.=.+=+-+|... +.+.+...-++-=.+.++.+-+++|||.-=|+.+++...+--|-+...+|.
T Consensus 3 ~m~~~~~~Y~~iL~~yl~~-~~E~~Ly~~q~fs~~~iek~i~PEeiV~iHk~~i~el~~~l~e~v~~Sfd~ 72 (84)
T 1w53_A 3 FREVIEQRYHQLLSRYIAE-LTETSLYQAQKFSRKTIEHQIPPEEIISIHRKVLKELYPSLPEDVFHSLDF 72 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc-ccHHHHHHHHHhhHHHHHcCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4455555333334444444 444777777777788888999999999999998888766623334444443
No 13
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=44.12 E-value=38 Score=27.84 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=18.6
Q ss_pred ChHHHHHHHhhcCchHHHHHHHHHHhHHHHHHHH
Q psy2984 10 SDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQ 43 (228)
Q Consensus 10 s~~~f~~~F~~~gL~el~~~~~k~~~~~~kkeL~ 43 (228)
|+.+|...|++-|.+ ..+|....+-+.|++.|+
T Consensus 198 S~~~l~r~fk~~G~t-~~~~l~~~Rl~~A~~lL~ 230 (276)
T 3gbg_A 198 NRMILKKELESRGVK-FRELINSIRISYSISLMK 230 (276)
T ss_dssp CHHHHHHHHHTTTCC-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHh
Confidence 455566666555544 455666655555555554
No 14
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=40.52 E-value=98 Score=23.36 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCh-hHHHHhhcc
Q psy2984 24 ADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPD-QELIVLNMD 83 (228)
Q Consensus 24 ~el~~~~~k~~~~~~kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~~iPe-~e~vf~~~~ 83 (228)
.++++=+-..+.+.+..+-++-=.+.++.+.+++|||.-=|+..++.. |+ -|-|...+|
T Consensus 12 ~~iL~~yl~~~~E~~Ly~aq~fsr~liek~I~PEeiV~iHk~~i~~l~-~~l~e~v~~s~d 71 (111)
T 2j6y_A 12 HQLLSRYIAELTKTSLYQAQKFSRKTIEHQIPPEEIISIHRKVLKELY-PSLPEDVFHSLD 71 (111)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHC-TTSCHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 345555555566688888888888999999999999999999888873 33 333444443
No 15
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=34.84 E-value=83 Score=21.84 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=17.5
Q ss_pred ChHHHHHHHhhc-CchHHHHHHHHHHhHHHHHHHH
Q psy2984 10 SDEYFRTVFEEK-GLADIVKLHMAQASQEAKKELQ 43 (228)
Q Consensus 10 s~~~f~~~F~~~-gL~el~~~~~k~~~~~~kkeL~ 43 (228)
|+.+|...|++. |.+ .-+|.....-+.+++.|.
T Consensus 32 S~~~l~r~fk~~~g~s-~~~~~~~~Rl~~A~~lL~ 65 (103)
T 3lsg_A 32 SSGYLSIMFKKNFGIP-FQDYLLQKRMEKAKLLLL 65 (103)
T ss_dssp CHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHHH
Confidence 455566666665 543 445555555555554443
No 16
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=32.91 E-value=95 Score=19.69 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=28.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q psy2984 28 KLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANK 69 (228)
Q Consensus 28 ~~~~k~~~~~~kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~ 69 (228)
.|.+|+....+|+.||-+=+++ ..+.||+.+++...+
T Consensus 6 aylrkkiarlkkdnlqlerdeq-----nlekiianlrdeiar 42 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQ-----NLEKIIANLRDEIAR 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHh-----hHHHHHHHHHHHHHH
Confidence 5778888888888888776664 566788888876655
No 17
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=31.49 E-value=71 Score=23.38 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=21.7
Q ss_pred ChHHHHHHHhhc-CchHHHHHHHHHHhHHHHHHHH
Q psy2984 10 SDEYFRTVFEEK-GLADIVKLHMAQASQEAKKELQ 43 (228)
Q Consensus 10 s~~~f~~~F~~~-gL~el~~~~~k~~~~~~kkeL~ 43 (228)
|..+|...|++. |. -..+|.....-+.+++.|.
T Consensus 40 S~~~l~r~fk~~~G~-s~~~~l~~~Rl~~A~~lL~ 73 (129)
T 1bl0_A 40 SKWHLQRMFKKETGH-SLGQYIRSRKMTEIAQKLK 73 (129)
T ss_dssp CHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHHH
Confidence 566777777776 65 3556666666666666554
No 18
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=31.31 E-value=47 Score=22.18 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCC
Q psy2984 38 AKKELQEQLEEQISEGASIKDIVADIREIANKHCIP 73 (228)
Q Consensus 38 ~kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~~iP 73 (228)
.-+.+.+.+++.++++.+.++|+.++....+..+.|
T Consensus 7 ~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lp~~ 42 (80)
T 3bqp_A 7 VCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP 42 (80)
T ss_dssp HHHHHHHHHHHHSCTTCCHHHHHHHHHHHGGGSCGG
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhCCCc
Confidence 346678889999999999999999999999876543
No 19
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=30.36 E-value=62 Score=25.47 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=18.6
Q ss_pred HHHHHHhhcCchHHHHHHHHHH
Q psy2984 13 YFRTVFEEKGLADIVKLHMAQA 34 (228)
Q Consensus 13 ~f~~~F~~~gL~el~~~~~k~~ 34 (228)
-.++||+++-|.++++||+.-.
T Consensus 75 iY~~~fT~~El~~l~~FY~sp~ 96 (147)
T 3oao_A 75 LYTTNFTESELKDLNAFYQSPL 96 (147)
T ss_dssp HHHHHSCHHHHHHHHHHHHSHH
T ss_pred HHHHHCCHHHHHHHHHHHCCHH
Confidence 3578999999999999999833
No 20
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=28.56 E-value=14 Score=34.98 Aligned_cols=64 Identities=9% Similarity=0.192 Sum_probs=40.3
Q ss_pred hHHHHHHHhhcCchHHHHHHHHHHh--------HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCh
Q psy2984 11 DEYFRTVFEEKGLADIVKLHMAQAS--------QEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPD 74 (228)
Q Consensus 11 ~~~f~~~F~~~gL~el~~~~~k~~~--------~~~kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~~iPe 74 (228)
++-=+.-|+++...+|++|..+--. ....++.+..+.+..++++.++++=..|++.++++++|.
T Consensus 415 pa~TtRG~~e~dm~~IA~~I~~~l~~~~~~~~~~~kl~~f~~~~~~~~~~~~~i~~lr~~V~~l~~~FP~pg 486 (490)
T 3ou5_A 415 PALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPG 486 (490)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHhcCcccHHHHHHHHHHHHHHHHhCCCCC
Confidence 3333444677778888888865221 112344444454444555566677788888999999995
No 21
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13
Probab=28.38 E-value=70 Score=25.67 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=24.5
Q ss_pred ChHHHHHHHhhcCch--HHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2984 10 SDEYFRTVFEEKGLA--DIVKLHMAQASQEAKKELQEQLEEQ 49 (228)
Q Consensus 10 s~~~f~~~F~~~gL~--el~~~~~k~~~~~~kkeL~~~L~~~ 49 (228)
+++.+.+..++.||+ +.-++.+...+...++++++..++.
T Consensus 134 ~~~~L~~~a~~~Gl~~~d~~~~~~~~~s~~~~~~v~~~~~~a 175 (226)
T 1r4w_A 134 ESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTGAA 175 (226)
T ss_dssp SHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCchhHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456677777777776 5555555445555666666655554
No 22
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=27.95 E-value=39 Score=21.94 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=28.0
Q ss_pred CCCChHHHHHHHhhcCchHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCChhH
Q psy2984 7 NKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKD 58 (228)
Q Consensus 7 ~kRs~~~f~~~F~~~gL~el~~~~~k~~~~~~kkeL~~~L~~~i~~~~~~~e 58 (228)
+|.+...+++..++.||+- .+.|.+|...|++..++++...|
T Consensus 6 ~kltV~eLK~~Lk~RGL~~----------~G~KadLieRL~~~~~~~~~~~~ 47 (51)
T 1h1j_S 6 SSLTVVQLKDLLTKRNLSV----------GGLKNELVQRLIKDDEESKGESE 47 (51)
T ss_dssp GGCCHHHHHHHHHHTTCCC----------CSSHHHHHHHHHHHHHHSCC---
T ss_pred HHCcHHHHHHHHHHcCCCC----------CCcHHHHHHHHHHHHHhccCCcc
Confidence 4556666777777777752 35688999999988887765554
No 23
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}
Probab=27.64 E-value=44 Score=24.50 Aligned_cols=34 Identities=9% Similarity=0.172 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhc
Q psy2984 37 EAKKELQEQLEEQISEGASIKDIVADIREIANKH 70 (228)
Q Consensus 37 ~~kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~ 70 (228)
.+-+-+...++.+++++++.++|+.++...+++.
T Consensus 74 ~~Ce~~V~~ie~~L~~N~Te~eI~~~l~k~C~~L 107 (108)
T 3rfi_A 74 TACEMAVVWMQNQLKQEGTKEKVLEYVNQLCEKI 107 (108)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhC
Confidence 4567788999999999999999999999988764
No 24
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=26.97 E-value=55 Score=26.44 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.4
Q ss_pred HHHHHHhhcCchHHHHHHHHHHhHHHH
Q psy2984 13 YFRTVFEEKGLADIVKLHMAQASQEAK 39 (228)
Q Consensus 13 ~f~~~F~~~gL~el~~~~~k~~~~~~k 39 (228)
.|+.+++++|++++++|.++++.++..
T Consensus 29 ~~A~~a~~~G~~~iA~~f~~~A~eE~~ 55 (191)
T 1lko_A 29 YFGGQAKKDGFVQISDIFAETADQERE 55 (191)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHH
Confidence 578899999999999999998877653
No 25
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=26.34 E-value=61 Score=22.57 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCC
Q psy2984 38 AKKELQEQLEEQISEGASIKDIVADIREIANKHCIP 73 (228)
Q Consensus 38 ~kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~~iP 73 (228)
.-+.+.+.+++++.++.+.++|+.++.+..+..+.|
T Consensus 10 ~C~~vv~~i~~~l~~n~t~~~I~~~l~~~C~~lp~~ 45 (91)
T 2qyp_A 10 VCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKS 45 (91)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHCCCC
Confidence 346677888888888889999999999999986654
No 26
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=25.51 E-value=1.3e+02 Score=20.51 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCChhHHH--HhhcchhHHHHHHH
Q psy2984 42 LQEQLEEQISEGASIKDIVADIREIANKHCIPDQELI--VLNMDVVKATERLL 92 (228)
Q Consensus 42 L~~~L~~~i~~~~~~~eII~~vk~~~~~~~iPe~e~v--f~~~~~~~~~~r~l 92 (228)
+-++|-+..++|..++|.|.++-+-.++..++--.-+ .|......|.-|.+
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQF~~Ral 56 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVRWH 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999999999888832211 23445555555544
No 27
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=25.29 E-value=92 Score=23.07 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHc--CCC-hhHHHHHHHHHHHhcCCCh
Q psy2984 39 KKELQEQLEEQISE--GAS-IKDIVADIREIANKHCIPD 74 (228)
Q Consensus 39 kkeL~~~L~~~i~~--~~~-~~eII~~vk~~~~~~~iPe 74 (228)
+..|++.|++..++ |.+ +=++++.+|+...+...|.
T Consensus 95 ~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~~p~ 133 (137)
T 1ukx_A 95 VNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHNKSG 133 (137)
T ss_dssp HHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhcCCCC
Confidence 44555555555544 554 4499999999999988884
No 28
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=24.85 E-value=1.3e+02 Score=20.30 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcC
Q psy2984 38 AKKELQEQLEEQISEGASIKDIVADIREIANKHC 71 (228)
Q Consensus 38 ~kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~~ 71 (228)
.-+.+.+.+++.+.++.+.++|..++....+..+
T Consensus 6 ~C~~iv~~ve~~l~~~~t~~~I~~~l~~~C~~lp 39 (78)
T 1nkl_A 6 SCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLK 39 (78)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCc
Confidence 3466788999999999999999999999998853
No 29
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1
Probab=22.86 E-value=72 Score=24.06 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.3
Q ss_pred HHHHHHhhcCchHHHHHHHHHHhHHH
Q psy2984 13 YFRTVFEEKGLADIVKLHMAQASQEA 38 (228)
Q Consensus 13 ~f~~~F~~~gL~el~~~~~k~~~~~~ 38 (228)
.++..+++.|++++.+|.++++.++.
T Consensus 29 ~~A~~a~~~g~~~~a~~f~~~A~eE~ 54 (144)
T 1j30_A 29 YFAKRADEEGYPEIAGLLRSIAEGET 54 (144)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 46788999999999999999877664
No 30
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=22.68 E-value=1e+02 Score=21.57 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=18.7
Q ss_pred ChHHHHHHHhhc-CchHHHHHHHHHHhHHHHHHHH
Q psy2984 10 SDEYFRTVFEEK-GLADIVKLHMAQASQEAKKELQ 43 (228)
Q Consensus 10 s~~~f~~~F~~~-gL~el~~~~~k~~~~~~kkeL~ 43 (228)
|..+|...|++. |.+ ..+|.....-+.+++.|.
T Consensus 33 S~~~l~r~fk~~~G~s-~~~~~~~~Rl~~A~~lL~ 66 (107)
T 2k9s_A 33 SPSRLSHLFRQQLGIS-VLSWREDQRISQAKLLLS 66 (107)
T ss_dssp CHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHHH
Confidence 455666667664 543 455555555555555444
No 31
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=22.65 E-value=1.3e+02 Score=20.93 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=14.5
Q ss_pred ChHHHHHHHhhc-CchHHHHHHHHHHhHHHHHHH
Q psy2984 10 SDEYFRTVFEEK-GLADIVKLHMAQASQEAKKEL 42 (228)
Q Consensus 10 s~~~f~~~F~~~-gL~el~~~~~k~~~~~~kkeL 42 (228)
|+.+|...|++. |.+ ..+|.....-+.+++.|
T Consensus 34 S~~~l~r~fk~~~G~s-~~~~~~~~Rl~~A~~lL 66 (108)
T 3oou_A 34 NAVYLGQLFQKEMGEH-FTDYLNRYRVNYAKEEL 66 (108)
T ss_dssp CHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHH
Confidence 344555555554 432 33444444444444433
No 32
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1
Probab=22.26 E-value=2.2e+02 Score=20.36 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=32.7
Q ss_pred HHHHHHHhh---cCchHHHH--HHHHHHhHHHHHHHHHHHHHHHHcC-C--ChhHHHHHHHHHHH
Q psy2984 12 EYFRTVFEE---KGLADIVK--LHMAQASQEAKKELQEQLEEQISEG-A--SIKDIVADIREIAN 68 (228)
Q Consensus 12 ~~f~~~F~~---~gL~el~~--~~~k~~~~~~kkeL~~~L~~~i~~~-~--~~~eII~~vk~~~~ 68 (228)
+.+.+..++ ++|.+.+. =..|+.-..+.+++++.+.+.+.++ . ..++|-...++..+
T Consensus 16 ~el~~~V~~~~~~~l~~A~~~~~~~K~eR~~al~~ik~~v~~~l~~e~~~~~~~~i~~~~~~lek 80 (104)
T 1whu_A 16 AEIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFNIVAK 80 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSCSHHHHHHHHHHHHHHHHHHTTTCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 335555554 44544444 3347788888888888888877443 1 23455555544433
No 33
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=21.90 E-value=1.5e+02 Score=19.97 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q psy2984 41 ELQEQLEEQISEGASIKDIVADIREIANK 69 (228)
Q Consensus 41 eL~~~L~~~i~~~~~~~eII~~vk~~~~~ 69 (228)
+.......-++.|-+.+|+|+.+++.+++
T Consensus 31 ~~l~~~erwv~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 31 QVVAQMERVVVGELETSDVIKDLMERIKR 59 (61)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 44555566666666667776666665554
No 34
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3
Probab=21.88 E-value=1.9e+02 Score=19.52 Aligned_cols=33 Identities=6% Similarity=0.263 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHhcC
Q psy2984 39 KKELQEQLEEQISEGASI-KDIVADIREIANKHC 71 (228)
Q Consensus 39 kkeL~~~L~~~i~~~~~~-~eII~~vk~~~~~~~ 71 (228)
-+.+.+.+++.+.++.+. ++|+.++....+..+
T Consensus 9 C~~~V~~ve~~l~~n~t~~~~I~~~l~~~C~~lp 42 (81)
T 1n69_A 9 CIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLG 42 (81)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHcC
Confidence 466788899999999998 999999999998876
No 35
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Probab=21.80 E-value=1.2e+02 Score=20.35 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCh
Q psy2984 38 AKKELQEQLEEQISEGASIKDIVADIREIANKHCIPD 74 (228)
Q Consensus 38 ~kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~~iPe 74 (228)
.-+.+.+.+++.+.++.+.++|...+....+. +|.
T Consensus 9 ~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~--lp~ 43 (83)
T 2gtg_A 9 VCEFLVKEVTKLIDNNKTEKEILDAFDKMCSK--LPK 43 (83)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTS--SCH
T ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH--CCC
Confidence 35677888999999999999999999988864 553
No 36
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=21.33 E-value=84 Score=21.55 Aligned_cols=33 Identities=3% Similarity=0.150 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcC
Q psy2984 38 AKKELQEQLEEQISEGASIKDIVADIREIANKHC 71 (228)
Q Consensus 38 ~kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~~ 71 (228)
.-+.+.+++.+++ ++.+.++|+.++.....+..
T Consensus 6 ~C~~~v~~le~~l-~n~Te~~I~~~L~~vC~~l~ 38 (74)
T 1l9l_A 6 TCLTIVQKLKKMV-DKPTQRSVSNAATRVCRTGR 38 (74)
T ss_dssp HHHHHHHHHHHHC-SSCCHHHHHHHHHHGGGSSC
T ss_pred HHHHHHHHHHHHh-cccCHHHHHHHHHHHHHhCC
Confidence 3566788999999 99999999999988877754
No 37
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=21.02 E-value=1.3e+02 Score=24.64 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=25.6
Q ss_pred ChHHHHHHHhhc-CchHHHHHHHHHHhHHHHHHHHH
Q psy2984 10 SDEYFRTVFEEK-GLADIVKLHMAQASQEAKKELQE 44 (228)
Q Consensus 10 s~~~f~~~F~~~-gL~el~~~~~k~~~~~~kkeL~~ 44 (228)
|..+|...|++. |.+ ..+|....+-+.+++.|++
T Consensus 32 s~~~l~r~f~~~~g~s-~~~~~~~~Rl~~a~~~L~~ 66 (292)
T 1d5y_A 32 SKWHLQRMFKDVTGHA-IGAYIRARRLSKSAVALRL 66 (292)
T ss_dssp CHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHHhc
Confidence 778899999986 765 6777777777777766653
No 38
>3f7c_A Protein of unknown function (DUF416); structural genomics, joint center for structural genomics, J protein structure initiative; HET: CIT; 2.00A {Marinobacter aquaeolei VT8}
Probab=20.94 E-value=2e+02 Score=23.69 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=45.8
Q ss_pred ChHHHHHHHhhcCchH--HHHHHHHHHhHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHhcCCC
Q psy2984 10 SDEYFRTVFEEKGLAD--IVKLHMAQASQEAKKELQEQLEEQISEGA-SIKDIVADIREIANKHCIP 73 (228)
Q Consensus 10 s~~~f~~~F~~~gL~e--l~~~~~k~~~~~~kkeL~~~L~~~i~~~~-~~~eII~~vk~~~~~~~iP 73 (228)
|-..|.+.=.++.+++ +.++.+....-..-.+.|.++-+.+++.+ ...|.|..+|....+-.++
T Consensus 126 TVa~f~e~~~~~el~~~el~~~~~~h~lm~~E~~~Q~~l~~~L~~~~~~~~e~ik~Lr~~~~~~GvS 192 (200)
T 3f7c_A 126 TVMDFVEMSEGEGMDENELVRVFEHHPLLKDDKLFQRDTVMALYYYRTPKEAFLAELRAGAANDGVS 192 (200)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhcCcCCCcHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHcCcc
Confidence 4455556555566555 66666665555556778888888888865 4679999999998887777
No 39
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=20.50 E-value=1.5e+02 Score=21.71 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCC
Q psy2984 39 KKELQEQLEEQISEGASIKDIVADIREIANKHCIP 73 (228)
Q Consensus 39 kkeL~~~L~~~i~~~~~~~eII~~vk~~~~~~~iP 73 (228)
+++..+.-.+.++.-...+||..+||+.+++--=|
T Consensus 31 q~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~ 65 (102)
T 1yo3_A 31 QIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDP 65 (102)
T ss_dssp HHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCC
Confidence 33333333334444456689999999988764333
Done!